Citrus Sinensis ID: 011654

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
Protein Sequence
MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA
Secondary Structure (PSIPRED)
ccEEEEEccccccHHHHHHHccccccccEEEEEccHHHHHHHHccccccccccHHHHHHHHccccccccccHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHccccccEEEccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccccHHHHHHHHHHHcccEEEEEcccccHHHHHHHHcccccccccccccccccccccccEEEEccHHHHHccccEEEEEcccHHcccccHHHHHHHHccccEEEEccccccHHHHHHcccEEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccccHHHHHHHHccccEEEEEEccHHHHHHHHcccccEccccHHHHHHHHHccccEEEccHHHHHHcccEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHccccccEEEEccHHHHHHcHHHHHHccccEEEEEccccHHHHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcccccccccHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEccccccccccHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHcccccccccccHHcccccccccccEEEEccHHHHHccccEEEEEEcHHHHccccHHHHHHHHcccEEEEEccccccHHHHHHcccEEEEEccccccccccccccc
Coil and Loop (DISEMBL)
mvkiccigagyvggpTMAVIALKCPKIEVAVVDISVSRIaawngdqlpiyepgledvvtqcrgrnlffSTDIEKHVAEADIVFVSvntptktqglgagkaadLTYWESAARMIANVSNsnkivvekstvpvkTAEAIEKILTHNSREIKYQIlsnpeflaegtaiqdlfnpdrvliggretpeGQKAIQALKDVYahwvpedriiTTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHaigkdtrigprflnssvgfggscfqkDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAfkkdtgdtretpaidvckgllgdkaklsiydpqvtedQIQRDlsmkkfdwdhpihlqpmsppaskqvNVVWDAYQAAKdahgvciltewdefktldYQKIFDnmrkpayifdgrnildvEKLREIGFIVYsigkpldpwhkdtlava
Flexible Loop (DISEMBL)
MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAwngdqlpiyEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSvntptktqglgagKAADLTYWESAARMIAnvsnsnkivvekstvpvktAEAIEKilthnsreiKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFafkkdtgdtretpaIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVysigkpldpwhkdtlava
Low Complexity Region (SEG)
MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA
Disordered region (IsUnstruct)
**KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHL*********QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWH*******
Disordered Region (DISOPRED)
MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPW********
Disordered Region (DISEMBL)
MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA
Disordered Region (DISPRO)
MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPL***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	480	2.2.26 [Sep-21-2011]
Q96558	480	UDP-glucose 6-dehydrogena	no	no	1.0	1.0	0.881	0.0
Q9LIA8	480	Probable UDP-glucose 6-de	yes	no	1.0	1.0	0.866	0.0
Q9FM01	480	Probable UDP-glucose 6-de	no	no	0.995	0.995	0.870	0.0
O02373	476	UDP-glucose 6-dehydrogena	yes	no	0.954	0.962	0.631	1e-172
Q5F3T9	494	UDP-glucose 6-dehydrogena	yes	no	0.95	0.923	0.621	1e-168
O60701	494	UDP-glucose 6-dehydrogena	yes	no	0.95	0.923	0.621	1e-167
O70475	493	UDP-glucose 6-dehydrogena	yes	no	0.95	0.924	0.617	1e-166
P12378	494	UDP-glucose 6-dehydrogena	yes	no	0.95	0.923	0.617	1e-166
Q5R7B3	494	UDP-glucose 6-dehydrogena	yes	no	0.95	0.923	0.619	1e-166
O70199	493	UDP-glucose 6-dehydrogena	yes	no	0.95	0.924	0.613	1e-166

>sp|Q96558|UGDH_SOYBN UDP-glucose 6-dehydrogenase OS=Glycine max PE=2 SV=1

 Score =  892 bits (2305), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/480 (88%), Positives = 454/480 (94%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDIS SRIAAWN DQLPIYEPGL+ VV Q
Sbjct: 1   MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQ 60

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
           CRG+NLFFSTD+EKHV EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA+VS S+
Sbjct: 61  CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKILTHNS+ IK+QILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180

Query: 181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TPEGQKAIQ LKDVYA WVPE+RI+TTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQTLKDVYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240

Query: 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
           GA+V QVS+++G D+RIGP+FLN+SVGFGGSCFQKDILNLVYICECNGL EVA YWKQVI
Sbjct: 241 GANVQQVSYSVGTDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300

Query: 301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
           K+NDYQK+RFVNR+V+SMFNTVS KKIAILGFAFKKDTGDTRETPAIDVC+GLLGDKA L
Sbjct: 301 KINDYQKSRFVNRVVASMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCQGLLGDKANL 360

Query: 361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
           SIYDPQVTEDQIQRDLSM KFDWDHPIHLQP SP   K+V+VVWDAY+A KDAHG+CILT
Sbjct: 361 SIYDPQVTEDQIQRDLSMNKFDWDHPIHLQPTSPTTVKKVSVVWDAYEATKDAHGLCILT 420

Query: 421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA 480
           EWDEFKTLDYQKIFDNM+KPA++FDGRNI+D +KLREIGFIVYSIGKPLDPW KD  AVA
Sbjct: 421 EWDEFKTLDYQKIFDNMQKPAFVFDGRNIVDADKLREIGFIVYSIGKPLDPWLKDMPAVA 480

Provides UDP-glucuronic acid for hemicellulose precursors.
Glycine max (taxid: 3847)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 2

>sp|Q9LIA8|UGDH1_ARATH Probable UDP-glucose 6-dehydrogenase 1 OS=Arabidopsis thaliana GN=UGD1 PE=1 SV=1

 Score =  880 bits (2275), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/480 (86%), Positives = 451/480 (93%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           MVKICCIGAGYVGGPTMAVIALKCP +EVAVVDISV RI AWN D LPIYEPGL+DVV Q
Sbjct: 1   MVKICCIGAGYVGGPTMAVIALKCPDVEVAVVDISVPRINAWNSDTLPIYEPGLDDVVKQ 60

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
           CRG+NLFFSTD+EKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAARMIA+VS S+
Sbjct: 61  CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSD 120

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKILTHNS+ IK+QILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180

Query: 181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TPEG KA+Q LK+VYAHWVPE +IITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240

Query: 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
           GADVTQVS+A+G D+RIGP+FLNSSVGFGGSCFQKDILNLVYICECNGL EVA YWKQVI
Sbjct: 241 GADVTQVSYAVGTDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300

Query: 301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
           K+NDYQK+RFVNR+VSSMFN+VS KKIA+LGFAFKKDTGDTRETPAIDVCKGLL DKA+L
Sbjct: 301 KINDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLEDKARL 360

Query: 361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
           SIYDPQVTEDQIQRDLSM KFDWDHP+HLQPMSP   KQV V WDAY+A KDAHG+CI+T
Sbjct: 361 SIYDPQVTEDQIQRDLSMNKFDWDHPLHLQPMSPTTVKQVTVTWDAYEATKDAHGICIMT 420

Query: 421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA 480
           EWDEFK LD+QKIFDNM+KPA++FDGRNI++++KLREIGFIVYSIGKPLD W KD  AVA
Sbjct: 421 EWDEFKNLDFQKIFDNMQKPAFVFDGRNIMNLQKLREIGFIVYSIGKPLDDWLKDMPAVA 480

Provides UDP-glucuronic acid for hemicellulose precursors.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q9FM01|UGDH2_ARATH Probable UDP-glucose 6-dehydrogenase 2 OS=Arabidopsis thaliana GN=UGD2 PE=2 SV=1

 Score =  879 bits (2271), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 416/478 (87%), Positives = 449/478 (93%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISV RI AWN DQLPIYEPGL+D+V Q
Sbjct: 1   MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQ 60

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
           CRG+NLFFSTD+EKHV EADIVFVSVNTPTKT GLGAGKAADLTYWESAARMIA+VS S+
Sbjct: 61  CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSD 120

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKIL HNS+ IK+QILSNPEFLAEGTAI DLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIADLFNPDRVLIGGRE 180

Query: 181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TPEG KA+Q LK+VYA+WVPE +IITTNLWSAELSKLAANAFLAQRISSVNAMSALCE+T
Sbjct: 181 TPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEST 240

Query: 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
           GADVTQVS+A+G D+RIG +FLN+SVGFGGSCFQKDILNLVYIC+CNGL EVA YWKQVI
Sbjct: 241 GADVTQVSYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICQCNGLPEVAEYWKQVI 300

Query: 301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
           K+NDYQKNRFVNRIVSSMFNTVS KK+AILGFAFKKDTGDTRETPAIDVCKGLLGDKA++
Sbjct: 301 KINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLLGDKAQI 360

Query: 361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
           SIYDPQVTE+QIQRDLSMKKFDWDHP+HLQPMSP   KQV+V WDAY+A KDAH VC+LT
Sbjct: 361 SIYDPQVTEEQIQRDLSMKKFDWDHPLHLQPMSPTTVKQVSVTWDAYEATKDAHAVCVLT 420

Query: 421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLA 478
           EWDEFK+LDYQKIFDNM+KPA+IFDGRNI++V KLREIGFIVYSIGKPLDPW KD  A
Sbjct: 421 EWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLREIGFIVYSIGKPLDPWLKDMPA 478

Provides UDP-glucuronic acid for hemicellulose precursors.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|O02373|UGDH_DROME UDP-glucose 6-dehydrogenase OS=Drosophila melanogaster GN=sgl PE=1 SV=1

 Score =  603 bits (1556), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 295/467 (63%), Positives = 360/467 (77%), Gaps = 9/467 (1%)

Query: 2   VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
           +K+CCIGAGYVGGPT AV+ALKCP I + +VD S  RIA WN D+LPIYEPGL++VV +C
Sbjct: 1   MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYEPGLDEVVKKC 60

Query: 62  RGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNK 121
           R  NLFFSTDIE  + EAD++F+SVNTPTKT G G G+AADL Y ESAARMIA ++ SNK
Sbjct: 61  RNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNK 120

Query: 122 IVVEKSTVPVKTAEAIEKILTHNSRE-IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           IVVEKSTVPV+ AE+I  IL  N +  I Y ILSNPEFLAEGTAI DL N DRVLIGG E
Sbjct: 121 IVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLIGGEE 180

Query: 181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TPEG +A++ L  +Y HW+P+  I+TTN WS+ELSKLAANAFLAQRISS+N++SA+CEAT
Sbjct: 181 TPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEAT 240

Query: 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
           GADV++V+ A+G D+RIG +FL +SVGFGGSCFQKDILNL+YICE   L EVA YW+QVI
Sbjct: 241 GADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVI 300

Query: 301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
            +N+YQK RF  +I+ S+FNTVS K+IAILGFAFKK+TGDTRET AI VC+ LL + A L
Sbjct: 301 DMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVCQTLLEEGAAL 360

Query: 361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
            IYDP+V  +QI  DL+       HP  +        K V +  D Y A +  H + I T
Sbjct: 361 DIYDPKVEPEQIIDDLT-------HP-SVTESPEKVKKAVQIHSDPYSAVRATHALVICT 412

Query: 421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGK 467
           EWDEF  LD+++I+ +M KPAYIFDGR ILD E+L++IGF V +IGK
Sbjct: 413 EWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459

Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate and heparan sulfate. Required for wingless signaling in different tissues.

Drosophila melanogaster (taxid: 7227)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q5F3T9|UGDH_CHICK UDP-glucose 6-dehydrogenase OS=Gallus gallus GN=UGDH PE=2 SV=1

 Score =  592 bits (1527), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/468 (62%), Positives = 360/468 (76%), Gaps = 12/468 (2%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KICCIGAGYVGGPT +VIA  CPKI+V VVD++ +RI AWN D LPIYEPGL++VV  CR
Sbjct: 6   KICCIGAGYVGGPTCSVIAQMCPKIQVTVVDVNEARINAWNSDTLPIYEPGLKEVVESCR 65

Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
           GRNLFFST I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KI
Sbjct: 66  GRNLFFSTSIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125

Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
           V EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ++
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDS 185

Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
           PEGQKA++AL  VY HWVP+++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245

Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
           ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct: 246 ADVEEVARAIGTDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305

Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
           +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + AKL 
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAKLH 365

Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
           IYDP+V ++QI  DLS      D+ +         S+ V +  D Y+A   AH + I TE
Sbjct: 366 IYDPKVPKEQIILDLSHPGVSEDNQV---------SRLVTISQDPYEACDGAHALVICTE 416

Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
           WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDDLHNELQVIGFQIETIGK 464

Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate.

Gallus gallus (taxid: 9031)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|O60701|UGDH_HUMAN UDP-glucose 6-dehydrogenase OS=Homo sapiens GN=UGDH PE=1 SV=1

 Score =  588 bits (1517), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 291/468 (62%), Positives = 355/468 (75%), Gaps = 12/468 (2%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KICCIGAGYVGGPT +VIA  CP+I V VVD++ SRI AWN   LPIYEPGL++VV  CR
Sbjct: 6   KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65

Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
           G+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KI
Sbjct: 66  GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125

Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
           V EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185

Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
           PEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245

Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
           ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305

Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
           +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L 
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365

Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
           IYDP+V  +QI  DLS      D  +         S+ V +  D Y+A   AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 416

Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
           WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|O70475|UGDH_MOUSE UDP-glucose 6-dehydrogenase OS=Mus musculus GN=Ugdh PE=1 SV=1

 Score =  585 bits (1509), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 289/468 (61%), Positives = 356/468 (76%), Gaps = 12/468 (2%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KICCIGAGYVGGPT +VIA  CP+I V VVD++ +RI AWN   LPIYEPGL++VV  CR
Sbjct: 6   KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCR 65

Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
           G+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KI
Sbjct: 66  GKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125

Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
           V EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185

Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
           PEGQKA++AL  VY HWVP+++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245

Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
           ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305

Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
           +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L 
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365

Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
           IYDP+V  +QI  DLS      D  +         S+ V +  D Y+A   AH + I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSADDQV---------SRLVTISKDPYEACDGAHALVICTE 416

Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
           WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHSELQTIGFQIETIGK 464

Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P12378|UGDH_BOVIN UDP-glucose 6-dehydrogenase OS=Bos taurus GN=UGDH PE=1 SV=2

 Score =  585 bits (1507), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 289/468 (61%), Positives = 354/468 (75%), Gaps = 12/468 (2%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KICCIGAGYVGGPT +VIA  CP+I V VVDI+ SRI AWN   LPIYEPGL++VV  CR
Sbjct: 6   KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDINESRINAWNSPTLPIYEPGLKEVVESCR 65

Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
           G+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S+  KI
Sbjct: 66  GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKI 125

Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
           V EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185

Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
           PEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKL ANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLTANAFLAQRISSINSISALCEATG 245

Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
           ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305

Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
           +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L 
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365

Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
           IYDP+V  +QI  DLS      D  +         ++ V +  D Y+A   AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSKDDQV---------ARLVTISKDPYEACDGAHAVVICTE 416

Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
           WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|Q5R7B3|UGDH_PONAB UDP-glucose 6-dehydrogenase OS=Pongo abelii GN=UGDH PE=2 SV=1

 Score =  584 bits (1505), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 290/468 (61%), Positives = 354/468 (75%), Gaps = 12/468 (2%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KICCIGAGYVGGPT +VIA   P+I V VVD++ SRI AWN   LPIYEPGL++VV  CR
Sbjct: 6   KICCIGAGYVGGPTCSVIAHMRPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65

Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
           G+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KI
Sbjct: 66  GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125

Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
           V EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185

Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
           PEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245

Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
           ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305

Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
           +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L 
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365

Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
           IYDP+V  +QI  DLS      D  +         S+ V +  D Y+A   AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 416

Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
           WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|O70199|UGDH_RAT UDP-glucose 6-dehydrogenase OS=Rattus norvegicus GN=Ugdh PE=1 SV=1

 Score =  584 bits (1505), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 287/468 (61%), Positives = 355/468 (75%), Gaps = 12/468 (2%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KICCIGAGYVGGPT +VIA  CP+I V VVD++ +RI AWN   LPIYEPGL++VV  CR
Sbjct: 6   KICCIGAGYVGGPTCSVIARMCPEIRVTVVDVNEARINAWNSPTLPIYEPGLKEVVESCR 65

Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
           G+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KI
Sbjct: 66  GKNLFFSTNIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125

Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
           V EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185

Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
           PEGQ+A+QAL  VY HWVP+++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCE+TG
Sbjct: 186 PEGQRAVQALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCESTG 245

Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
           ADV +V+ AIG D RIG +FL +SVGFGG CFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGGCFQKDVLNLVYLCEALNLPEVARYWQQVID 305

Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
           +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L 
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365

Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
           IYDP+V  +QI  DLS      D  +         S+ V +  D Y+A   AH + I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSADDQV---------SRLVTISKDPYEACDGAHALVICTE 416

Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
           WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKRMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

Involved in the biosynthesis of glycosaminoglycans; hyaluronan, chondroitin sulfate, and heparan sulfate.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	480
225452968	480	PREDICTED: UDP-glucose 6-dehydrogenase [	1.0	1.0	0.895	0.0
225457281	480	PREDICTED: UDP-glucose 6-dehydrogenase [	1.0	1.0	0.881	0.0
255547257	480	UDP-glucose 6-dehydrogenase, putative [R	1.0	1.0	0.889	0.0
40317278	480	UDP-glucose dehydrogenase [Cinnamomum os	1.0	1.0	0.879	0.0
283488493	480	UDP-D-glucose dehydrogenase [Gossypium h	1.0	1.0	0.891	0.0
283488491	480	UDP-D-glucose dehydrogenase [Gossypium h	1.0	1.0	0.891	0.0
255542070	480	UDP-glucose 6-dehydrogenase, putative [R	1.0	1.0	0.883	0.0
225423507	480	PREDICTED: UDP-glucose 6-dehydrogenase-l	1.0	1.0	0.885	0.0
144926039	480	UDP-glucose dehydrogenase [Eucalyptus gr	1.0	1.0	0.883	0.0
356551148	480	PREDICTED: UDP-glucose 6-dehydrogenase-l	1.0	1.0	0.889	0.0

>gi|225452968|ref|XP_002284346.1| PREDICTED: UDP-glucose 6-dehydrogenase [Vitis vinifera] gi|147778657|emb|CAN62897.1| hypothetical protein VITISV_020300 [Vitis vinifera]

 Score =  907 bits (2345), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/480 (89%), Positives = 457/480 (95%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISVSRI AWN DQLPIYEPGL+ VV Q
Sbjct: 1   MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISVSRITAWNSDQLPIYEPGLDGVVKQ 60

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
           CRG+NLFFSTD+EKHV+EADIVFVSVNTPTKT+GLGAGKAADLTYWESAARMIA+VS S+
Sbjct: 61  CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKILTHNS+ IK+QILSNPEFLAEGTAIQDL  PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLLKPDRVLIGGRE 180

Query: 181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TPEGQKAIQALKDVYAHWVPEDRI+TTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQALKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240

Query: 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
           GADVTQVS+A+G DTRIGP+FLN+SVGFGGSCFQKDILNLVYICECNGL EVA YWKQVI
Sbjct: 241 GADVTQVSYAVGTDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300

Query: 301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
           KVNDYQKNRFVNR+VSSMFNTVS KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA+L
Sbjct: 301 KVNDYQKNRFVNRVVSSMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360

Query: 361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
           SIYDPQVTEDQIQRDL+M KFDWDHPIHLQPMSP   KQV++VWDAY A KDAHG+CILT
Sbjct: 361 SIYDPQVTEDQIQRDLTMNKFDWDHPIHLQPMSPTTVKQVSMVWDAYSATKDAHGICILT 420

Query: 421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA 480
           EWDEFKTLDY+KI+DNM+KPA++FDGRNI++ EKLREIGFIVYSIGKPLDPW KD  AVA
Sbjct: 421 EWDEFKTLDYKKIYDNMQKPAFVFDGRNIVNAEKLREIGFIVYSIGKPLDPWLKDMPAVA 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225457281|ref|XP_002284402.1| PREDICTED: UDP-glucose 6-dehydrogenase [Vitis vinifera] gi|147859988|emb|CAN81053.1| hypothetical protein VITISV_021451 [Vitis vinifera]

 Score =  905 bits (2340), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 423/480 (88%), Positives = 460/480 (95%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDIS+SRI AWN DQLPIYEPGLE+VV Q
Sbjct: 1   MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISISRITAWNSDQLPIYEPGLEEVVKQ 60

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
           CRGRNLFFST++EKH++EADI+FVSVNTPTKT+GLGAGKAADLTYWESAARMIA+VS SN
Sbjct: 61  CRGRNLFFSTNVEKHISEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSN 120

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKIL+HNS+ I YQILSNPEFLAEGTAIQDL NPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILSHNSKGISYQILSNPEFLAEGTAIQDLLNPDRVLIGGRE 180

Query: 181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TP GQKAI+ALKDVYAHWVPEDRII+TNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPGGQKAIKALKDVYAHWVPEDRIISTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240

Query: 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
           GADV++VSHAIGKD+RIGP+FLN+SVGFGGSCFQKDILNL+YICECNGL EVANYWKQVI
Sbjct: 241 GADVSEVSHAIGKDSRIGPKFLNASVGFGGSCFQKDILNLIYICECNGLPEVANYWKQVI 300

Query: 301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
           KVNDYQKNRFVNR+V+SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA L
Sbjct: 301 KVNDYQKNRFVNRVVASMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKASL 360

Query: 361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
           SIYDPQVT DQIQR++SM KFDWDHP+HLQPMSP + KQVNVVWD Y+A +DAHG+CILT
Sbjct: 361 SIYDPQVTGDQIQREISMNKFDWDHPVHLQPMSPTSVKQVNVVWDPYEATRDAHGICILT 420

Query: 421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA 480
           EWDEFKTLDYQ+IF+NM+KPA++FDGRNI+++EKLREIGFIVYSIGKPLDPW KD  A+A
Sbjct: 421 EWDEFKTLDYQRIFNNMQKPAFVFDGRNIVNIEKLREIGFIVYSIGKPLDPWLKDMPAIA 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547257|ref|XP_002514686.1| UDP-glucose 6-dehydrogenase, putative [Ricinus communis] gi|223546290|gb|EEF47792.1| UDP-glucose 6-dehydrogenase, putative [Ricinus communis]

 Score =  901 bits (2328), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/480 (88%), Positives = 454/480 (94%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           MVKICCIGAGYVGGPTMA+IALKCP IEVAVVDISVSRIAAWN D LPIYEPGL++VV Q
Sbjct: 1   MVKICCIGAGYVGGPTMAIIALKCPSIEVAVVDISVSRIAAWNSDHLPIYEPGLDEVVKQ 60

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
           CRG NLFFSTD+EKHV+EA+I+FVSVNTPTKT+GLGAGKAADLTYWESAARMIA+VS S+
Sbjct: 61  CRGENLFFSTDVEKHVSEANIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKIL HNSR IKYQILSNPEFLAEGTAIQDL NPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILLHNSRGIKYQILSNPEFLAEGTAIQDLLNPDRVLIGGRE 180

Query: 181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TP+GQKAIQALKDVYAHWVPEDRI+ TNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPDGQKAIQALKDVYAHWVPEDRILATNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240

Query: 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
           GADV+QVSHA+GKDTRIGP+FLN+SVGFGGSCFQKDILNLVYICECNGL EVANYWKQVI
Sbjct: 241 GADVSQVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLAEVANYWKQVI 300

Query: 301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
           K+NDYQK RFVNRIVSSMFNTVSGKKI ILGFAFKKDTGDTRETPAIDVCKGLLGDKA L
Sbjct: 301 KINDYQKTRFVNRIVSSMFNTVSGKKIGILGFAFKKDTGDTRETPAIDVCKGLLGDKACL 360

Query: 361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
           SIYDPQVTEDQIQRDLSM KFDWDHP+HLQP+SP   KQV+VVWDAY+A K AHG+CILT
Sbjct: 361 SIYDPQVTEDQIQRDLSMNKFDWDHPVHLQPLSPSGVKQVSVVWDAYEATKGAHGLCILT 420

Query: 421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA 480
           EWDEFK LDYQKIFDNM+KPA++FDGRNILDV+KLR IGFIVYSIGKPLD W +D  AVA
Sbjct: 421 EWDEFKNLDYQKIFDNMQKPAFVFDGRNILDVDKLRNIGFIVYSIGKPLDQWLRDMPAVA 480

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|40317278|gb|AAR84297.1| UDP-glucose dehydrogenase [Cinnamomum osmophloeum]

 Score =  900 bits (2327), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/480 (87%), Positives = 458/480 (95%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           MVKICCIGAGYVGGPTMAVIALKCP IEV VVDISV+RIAAWN +QLPIYEPGL+DVV Q
Sbjct: 1   MVKICCIGAGYVGGPTMAVIALKCPSIEVVVVDISVARIAAWNSEQLPIYEPGLDDVVKQ 60

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
           CRGRNLFFSTDIEKH++EADI+FVSVNTPTKT+GLGAGKAADLTYWESAARMIA+VS S+
Sbjct: 61  CRGRNLFFSTDIEKHISEADIIFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKILTHNSR I +QILSNPEFLAEGTAI+DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSRGINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRE 180

Query: 181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TPEGQKAI+ LKDVYAHWVPEDRI+ TNLWSAELSKLAANA LAQRISS+NAMSALCEAT
Sbjct: 181 TPEGQKAIKTLKDVYAHWVPEDRILATNLWSAELSKLAANAVLAQRISSINAMSALCEAT 240

Query: 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
           GADVT+V++A+GKD+RIGP+FLN+SVGFGGSCFQKDILNLVYICECNGL EVANYWKQVI
Sbjct: 241 GADVTEVAYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300

Query: 301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
           K+NDYQKNRFVNR+V+SMFNTVSGKKIA+LGFAFKKDTGDTRETPAIDVCKGLLGDKAK+
Sbjct: 301 KINDYQKNRFVNRVVASMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKI 360

Query: 361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
           SIYDPQVTEDQIQRDL+M KFDWDHPIHLQPMSP   KQV+V WDAY+A KDAHGVCILT
Sbjct: 361 SIYDPQVTEDQIQRDLAMNKFDWDHPIHLQPMSPTTVKQVSVTWDAYEATKDAHGVCILT 420

Query: 421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA 480
           EWDEFK LDYQKI+DNM+KPA++FDGRNI+DVEKLR+IGFIV+SIGKPLDPW KD  AVA
Sbjct: 421 EWDEFKALDYQKIYDNMQKPAFVFDGRNIVDVEKLRKIGFIVFSIGKPLDPWLKDMPAVA 480

Source: Cinnamomum osmophloeum

Species: Cinnamomum osmophloeum

Genus: Cinnamomum

Family: Lauraceae

Order: Laurales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|283488493|gb|ADB24768.1| UDP-D-glucose dehydrogenase [Gossypium hirsutum]

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/480 (89%), Positives = 455/480 (94%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           MVKICCIGAGYVGGPTMAVIALKCP+IEVAVVDISVSRI AWN D LPIYEPGL++VV +
Sbjct: 1   MVKICCIGAGYVGGPTMAVIALKCPEIEVAVVDISVSRITAWNSDTLPIYEPGLDEVVKK 60

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
           CRG+NLFFS+D+EKHV+EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA+VS SN
Sbjct: 61  CRGKNLFFSSDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSN 120

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKILTHNS+ I +QILSNPEFLAEGTAIQDLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIDFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180

Query: 181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TPEGQKAI AL+DVYAHWVP DRII +NLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIAALRDVYAHWVPVDRIICSNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240

Query: 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
           GADV+QVSHA+GKDTRIGP+FLN+SVGFGGSCFQKDILNLVYICECNGL EVANYWKQVI
Sbjct: 241 GADVSQVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300

Query: 301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
           K+NDYQK RFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA L
Sbjct: 301 KINDYQKTRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKALL 360

Query: 361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
           SIYDPQV E+QIQRDL+MKKFDWDHP+HLQPMSP + KQVNVVWDAY A KDAHGVCILT
Sbjct: 361 SIYDPQVNEEQIQRDLAMKKFDWDHPVHLQPMSPTSIKQVNVVWDAYAATKDAHGVCILT 420

Query: 421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA 480
           EWDEFKTLDYQ+I+DNMRKPA+IFDGRN++D  KLR IGFIVYSIGKPLD W KD  AVA
Sbjct: 421 EWDEFKTLDYQRIYDNMRKPAFIFDGRNVVDEAKLRAIGFIVYSIGKPLDQWLKDMPAVA 480

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|283488491|gb|ADB24767.1| UDP-D-glucose dehydrogenase [Gossypium hirsutum]

 Score =  900 bits (2326), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 428/480 (89%), Positives = 455/480 (94%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           MVKICCIGAGYVGGPTMAVIALKCP+IEVAVVDISVSRI AWN D LPIYEPGL++VV +
Sbjct: 1   MVKICCIGAGYVGGPTMAVIALKCPEIEVAVVDISVSRITAWNSDALPIYEPGLDEVVKK 60

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
           CRG+NLFFSTD+EKHV+EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA+VS SN
Sbjct: 61  CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSN 120

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKILTHNS+ I +QILSNPEFLAEGTAIQDLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIDFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180

Query: 181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TPEGQKAI AL+DVYAHWVP DRII +NLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIAALRDVYAHWVPVDRIICSNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240

Query: 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
           GADV+QV+HA+GKDTRIGP+FLN+SVGFGGSCFQKDILNLVYICECNGL EVANYWKQVI
Sbjct: 241 GADVSQVAHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300

Query: 301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
           K+NDYQK RFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA L
Sbjct: 301 KINDYQKTRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKALL 360

Query: 361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
           SIYDPQV E+QIQRDL+MKKFDWDHP+HLQPMSP + KQVNVVWDAY A KDAHGVCILT
Sbjct: 361 SIYDPQVNEEQIQRDLAMKKFDWDHPVHLQPMSPTSIKQVNVVWDAYAATKDAHGVCILT 420

Query: 421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA 480
           EWDEFKTLDYQ+I+DNMRKPA+IFDGRN++D  KLR IGFIVYSIGKPLD W KD  AVA
Sbjct: 421 EWDEFKTLDYQRIYDNMRKPAFIFDGRNVVDEAKLRAIGFIVYSIGKPLDQWLKDMPAVA 480

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542070|ref|XP_002512099.1| UDP-glucose 6-dehydrogenase, putative [Ricinus communis] gi|223549279|gb|EEF50768.1| UDP-glucose 6-dehydrogenase, putative [Ricinus communis]

 Score =  899 bits (2324), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/480 (88%), Positives = 460/480 (95%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           MVKICCIGAGYVGGPTMAVIALKCP+IEVAVVDISV+RI AWN DQLPIYEPGL+DVV +
Sbjct: 1   MVKICCIGAGYVGGPTMAVIALKCPEIEVAVVDISVARINAWNSDQLPIYEPGLDDVVKE 60

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
           CRGRNLFFSTD+EKHV+EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA+VS S+
Sbjct: 61  CRGRNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKILTHNS+ I +QILSNPEFLAEGTAI DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAISDLFKPDRVLIGGRE 180

Query: 181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TPEGQKAIQAL+DVYAHWVP ++II TNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQALRDVYAHWVPVEQIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240

Query: 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
           GADVTQVSHA+GKDTRIGP+FLN+SVGFGGSCFQKDILNLVYICECNGL EVANYWKQVI
Sbjct: 241 GADVTQVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300

Query: 301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
           KVNDYQKNRFVNR+VSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA+L
Sbjct: 301 KVNDYQKNRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAQL 360

Query: 361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
           SIYDPQV+EDQIQRDLSMKKFDWDHPIHLQP+SP + KQV+ VWDAY+A K AHG+CILT
Sbjct: 361 SIYDPQVSEDQIQRDLSMKKFDWDHPIHLQPVSPTSVKQVSCVWDAYEATKGAHGICILT 420

Query: 421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA 480
           EWDEFKTLDY++I++NM+KPA++FDGRNI+D +KLR+IGFIVY+IGKPLDPW KD  A+A
Sbjct: 421 EWDEFKTLDYERIYENMQKPAFVFDGRNIVDADKLRQIGFIVYAIGKPLDPWLKDMPAIA 480

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423507|ref|XP_002269692.1| PREDICTED: UDP-glucose 6-dehydrogenase-like isoform 1 [Vitis vinifera]

 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/480 (88%), Positives = 457/480 (95%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISV RI AWN DQLPIYEPGL++VV Q
Sbjct: 1   MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVGRINAWNSDQLPIYEPGLDEVVKQ 60

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
           CRG+NLFFSTD+EKHV+EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA+VS S+
Sbjct: 61  CRGKNLFFSTDVEKHVSEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSD 120

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKILTHNS+ I +QILSNPEFLAEGTAIQDLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180

Query: 181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TPEGQKAI+AL+DVYAHWVP +RII TNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIKALRDVYAHWVPVERIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240

Query: 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
           GADVT+VSHA+GKDTRIGP+FLN+SVGFGGSCFQKDILNLVYICECNGL EVANYWKQVI
Sbjct: 241 GADVTEVSHAVGKDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVANYWKQVI 300

Query: 301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
           KVNDYQK RFVNR+VSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA L
Sbjct: 301 KVNDYQKTRFVNRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAHL 360

Query: 361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
           SIYDPQV+ +QIQRDL+MKKFDWDHPIHLQP+SP + KQV+VVWDAY A KDAHG+CILT
Sbjct: 361 SIYDPQVSGEQIQRDLAMKKFDWDHPIHLQPLSPTSVKQVSVVWDAYTATKDAHGICILT 420

Query: 421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA 480
           EWDEFK+LDY+KI+DNM+KPA++FDGRN++D EKLREIGFIVYSIGKPLD W KD  AVA
Sbjct: 421 EWDEFKSLDYKKIYDNMQKPAFVFDGRNVVDAEKLREIGFIVYSIGKPLDAWLKDMPAVA 480

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|144926039|gb|ABP04019.1| UDP-glucose dehydrogenase [Eucalyptus grandis]

 Score =  897 bits (2318), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/480 (88%), Positives = 455/480 (94%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           MVKICCIGAGYVGGPTMAVIALKCP +EVAVVDISVSRI AWN +QLPIYEPGL+ VV Q
Sbjct: 1   MVKICCIGAGYVGGPTMAVIALKCPSVEVAVVDISVSRIQAWNSEQLPIYEPGLDAVVKQ 60

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
           CRG+NLFFSTD+EKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAARMIA+VS S+
Sbjct: 61  CRGKNLFFSTDVEKHVFEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKILTHNS+ IK+QILSNPEFLAEGTAIQDLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIQDLFAPDRVLIGGRE 180

Query: 181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TPEGQKAIQ LKDVYAHWVPEDRI+TTNLWSAELSKLAANAFLAQRISSVNAMS+LCEAT
Sbjct: 181 TPEGQKAIQTLKDVYAHWVPEDRILTTNLWSAELSKLAANAFLAQRISSVNAMSSLCEAT 240

Query: 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
           GADV QVS+A+GKD+RIGP+FLN+SVGFGGSCFQKDILNLVYICECNGL EVA YWKQVI
Sbjct: 241 GADVAQVSYAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300

Query: 301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
           K+NDYQK RFVNR+VSSMFNTVS KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA+L
Sbjct: 301 KINDYQKARFVNRVVSSMFNTVSNKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360

Query: 361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
           SIYDPQVTE+QIQRDL+M KFDWDHP+HLQPMSP   KQV+VVWDAY A KDAHG+CILT
Sbjct: 361 SIYDPQVTEEQIQRDLTMNKFDWDHPVHLQPMSPTTVKQVSVVWDAYDAVKDAHGLCILT 420

Query: 421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA 480
           EWDEFKTLDYQ+I+DNM+KPAYIFDGRN+++V KLREIGFIVYSIGKPLDPW KD  AVA
Sbjct: 421 EWDEFKTLDYQRIYDNMQKPAYIFDGRNVVNVNKLREIGFIVYSIGKPLDPWLKDMPAVA 480

Source: Eucalyptus grandis

Species: Eucalyptus grandis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551148|ref|XP_003543940.1| PREDICTED: UDP-glucose 6-dehydrogenase-like [Glycine max]

 Score =  895 bits (2314), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/480 (88%), Positives = 454/480 (94%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDIS SRIAAWN DQLPIYEPGL+ VV Q
Sbjct: 1   MVKICCIGAGYVGGPTMAVIALKCPSIEVAVVDISKSRIAAWNSDQLPIYEPGLDGVVKQ 60

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
           CRG+NLFFSTD+EKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAARMIA+VS S+
Sbjct: 61  CRGKNLFFSTDVEKHVYEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKILTHN + IK+QILSNPEFLAEGTAIQDLFNPDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNGKGIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180

Query: 181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TPEGQKAIQ LKDVYAHWVPE RI+TTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAIQTLKDVYAHWVPEGRILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240

Query: 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
           GA+VTQVS+A+G DTRIGP+FLNSSVGFGGSCFQKDILNLVYICECNGL EVA YWKQVI
Sbjct: 241 GANVTQVSYAVGTDTRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300

Query: 301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
           K+NDYQK+RFVNR+VSSMFNTV+ KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA+L
Sbjct: 301 KINDYQKSRFVNRVVSSMFNTVATKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360

Query: 361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
           SIYDPQVTEDQIQRDL M KFDWDHPIHLQP SP   K+V+VVWDAY+A KDA GVCILT
Sbjct: 361 SIYDPQVTEDQIQRDLWMNKFDWDHPIHLQPTSPTTEKKVSVVWDAYEATKDADGVCILT 420

Query: 421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA 480
           EWDEFKTLDYQK++DNMRKPA++FDGRNI+DVEKLR+IGFIVYSIGKPLDPW KD  AVA
Sbjct: 421 EWDEFKTLDYQKVYDNMRKPAFVFDGRNIVDVEKLRDIGFIVYSIGKPLDPWLKDMPAVA 480

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	480
TAIR|locus:2093827	480	UGD2 "UDP-glucose dehydrogenas	1.0	1.0	0.866	1.4e-229
TAIR|locus:2157275	480	UDG4 "UDP-glucose dehydrogenas	0.989	0.989	0.873	7.8e-229
TAIR|locus:2180872	480	UGD3 "UDP-glucose dehydrogenas	1.0	1.0	0.854	3.9e-227
TAIR|locus:2197945	481	UGD1 "UDP-glucose dehydrogenas	1.0	0.997	0.829	4.4e-219
FB|FBgn0261445	476	sgl "sugarless" [Drosophila me	0.952	0.960	0.634	5.6e-155
ZFIN|ZDB-GENE-011022-1	493	ugdh "UDP-glucose dehydrogenas	0.954	0.929	0.615	1.5e-152
UNIPROTKB|Q5F3T9	494	UGDH "UDP-glucose 6-dehydrogen	0.95	0.923	0.621	4.1e-152
UNIPROTKB|I3LIM2	494	UGDH "UDP-glucose 6-dehydrogen	0.95	0.923	0.623	4.7e-151
UNIPROTKB|O60701	494	UGDH "UDP-glucose 6-dehydrogen	0.95	0.923	0.623	7.6e-151
UNIPROTKB|E2R311	494	UGDH "UDP-glucose 6-dehydrogen	0.95	0.923	0.623	1.2e-150

TAIR|locus:2093827 UGD2 "UDP-glucose dehydrogenase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 2215 (784.8 bits), Expect = 1.4e-229, P = 1.4e-229
 Identities = 416/480 (86%), Positives = 451/480 (93%)

Query:     1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
             MVKICCIGAGYVGGPTMAVIALKCP +EVAVVDISV RI AWN D LPIYEPGL+DVV Q
Sbjct:     1 MVKICCIGAGYVGGPTMAVIALKCPDVEVAVVDISVPRINAWNSDTLPIYEPGLDDVVKQ 60

Query:    61 CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
             CRG+NLFFSTD+EKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAARMIA+VS S+
Sbjct:    61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSD 120

Query:   121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
             KIVVEKSTVPVKTAEAIEKILTHNS+ IK+QILSNPEFLAEGTAI+DLFNPDRVLIGGRE
Sbjct:   121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIKDLFNPDRVLIGGRE 180

Query:   181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
             TPEG KA+Q LK+VYAHWVPE +IITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct:   181 TPEGFKAVQTLKNVYAHWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240

Query:   241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
             GADVTQVS+A+G D+RIGP+FLNSSVGFGGSCFQKDILNLVYICECNGL EVA YWKQVI
Sbjct:   241 GADVTQVSYAVGTDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300

Query:   301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
             K+NDYQK+RFVNR+VSSMFN+VS KKIA+LGFAFKKDTGDTRETPAIDVCKGLL DKA+L
Sbjct:   301 KINDYQKSRFVNRVVSSMFNSVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLEDKARL 360

Query:   361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
             SIYDPQVTEDQIQRDLSM KFDWDHP+HLQPMSP   KQV V WDAY+A KDAHG+CI+T
Sbjct:   361 SIYDPQVTEDQIQRDLSMNKFDWDHPLHLQPMSPTTVKQVTVTWDAYEATKDAHGICIMT 420

Query:   421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA 480
             EWDEFK LD+QKIFDNM+KPA++FDGRNI++++KLREIGFIVYSIGKPLD W KD  AVA
Sbjct:   421 EWDEFKNLDFQKIFDNMQKPAFVFDGRNIMNLQKLREIGFIVYSIGKPLDDWLKDMPAVA 480

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003979 "UDP-glucose 6-dehydrogenase activity" evidence=IGI;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005975 "carbohydrate metabolic process" evidence=IGI

GO:0052546 "cell wall pectin metabolic process" evidence=IGI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2157275 UDG4 "UDP-glucose dehydrogenase 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 2208 (782.3 bits), Expect = 7.8e-229, P = 7.8e-229
 Identities = 415/475 (87%), Positives = 448/475 (94%)

Query:     1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
             MVKICCIGAGYVGGPTMAVIALKCP IEVAVVDISV RI AWN DQLPIYEPGL+D+V Q
Sbjct:     1 MVKICCIGAGYVGGPTMAVIALKCPDIEVAVVDISVPRINAWNSDQLPIYEPGLDDIVKQ 60

Query:    61 CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
             CRG+NLFFSTD+EKHV EADIVFVSVNTPTKT GLGAGKAADLTYWESAARMIA+VS S+
Sbjct:    61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTTGLGAGKAADLTYWESAARMIADVSVSD 120

Query:   121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
             KIVVEKSTVPVKTAEAIEKIL HNS+ IK+QILSNPEFLAEGTAI DLFNPDRVLIGGRE
Sbjct:   121 KIVVEKSTVPVKTAEAIEKILMHNSKGIKFQILSNPEFLAEGTAIADLFNPDRVLIGGRE 180

Query:   181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
             TPEG KA+Q LK+VYA+WVPE +IITTNLWSAELSKLAANAFLAQRISSVNAMSALCE+T
Sbjct:   181 TPEGFKAVQTLKEVYANWVPEGQIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEST 240

Query:   241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
             GADVTQVS+A+G D+RIG +FLN+SVGFGGSCFQKDILNLVYIC+CNGL EVA YWKQVI
Sbjct:   241 GADVTQVSYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICQCNGLPEVAEYWKQVI 300

Query:   301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
             K+NDYQKNRFVNRIVSSMFNTVS KK+AILGFAFKKDTGDTRETPAIDVCKGLLGDKA++
Sbjct:   301 KINDYQKNRFVNRIVSSMFNTVSNKKVAILGFAFKKDTGDTRETPAIDVCKGLLGDKAQI 360

Query:   361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
             SIYDPQVTE+QIQRDLSMKKFDWDHP+HLQPMSP   KQV+V WDAY+A KDAH VC+LT
Sbjct:   361 SIYDPQVTEEQIQRDLSMKKFDWDHPLHLQPMSPTTVKQVSVTWDAYEATKDAHAVCVLT 420

Query:   421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKD 475
             EWDEFK+LDYQKIFDNM+KPA+IFDGRNI++V KLREIGFIVYSIGKPLDPW KD
Sbjct:   421 EWDEFKSLDYQKIFDNMQKPAFIFDGRNIMNVNKLREIGFIVYSIGKPLDPWLKD 475

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003979 "UDP-glucose 6-dehydrogenase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009749 "response to glucose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2180872 UGD3 "UDP-glucose dehydrogenase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 2192 (776.7 bits), Expect = 3.9e-227, P = 3.9e-227
 Identities = 410/480 (85%), Positives = 450/480 (93%)

Query:     1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
             MVKICCIGAGYVGGPTMAVIALKCP +EVAVVDISV RI AWN DQLPIYEPGL+DVV Q
Sbjct:     1 MVKICCIGAGYVGGPTMAVIALKCPSVEVAVVDISVPRINAWNSDQLPIYEPGLDDVVKQ 60

Query:    61 CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
             CRG+NLFFSTD+EKHV EADIVFVSVNTPTKT+GLGAGKAADLTYWESAARMIA+VS S+
Sbjct:    61 CRGKNLFFSTDVEKHVREADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSVSD 120

Query:   121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
             KIVVEKSTVPVKTAEAIEKILTHNS+ IK+QILSNPEFLAEGTAI+DLF PDRVLIGGRE
Sbjct:   121 KIVVEKSTVPVKTAEAIEKILTHNSKGIKFQILSNPEFLAEGTAIEDLFMPDRVLIGGRE 180

Query:   181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
             T EG  A++ALKD+YA WVPE+RI+TTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct:   181 TTEGFAAVKALKDIYAQWVPEERILTTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240

Query:   241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
             GA+V++VS+A+GKD+RIGP+FLNSSVGFGGSCFQKDILNLVYICECNGL EVA YWKQVI
Sbjct:   241 GANVSEVSYAVGKDSRIGPKFLNSSVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300

Query:   301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
             K+NDYQK RFVNRIVSSMFNTVS KKIA+LGFAFKKDTGDTRETPAIDVCKGLLGDKA+L
Sbjct:   301 KINDYQKTRFVNRIVSSMFNTVSNKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKARL 360

Query:   361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
             SIYDPQVTE+QIQRDL+M KFDWDHP+HLQPMSP   KQV+V WDAY A KDAHG+CILT
Sbjct:   361 SIYDPQVTEEQIQRDLTMNKFDWDHPLHLQPMSPTTVKQVSVAWDAYTATKDAHGICILT 420

Query:   421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAVA 480
             EWDEFK LD+Q+IF+NM+KPA++FDGRN++D +KLREIGFIVYSIGKPLD W KD  A+A
Sbjct:   421 EWDEFKKLDFQRIFENMQKPAFVFDGRNVVDADKLREIGFIVYSIGKPLDQWLKDMPALA 480

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003979 "UDP-glucose 6-dehydrogenase activity" evidence=IGI;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005618 "cell wall" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005975 "carbohydrate metabolic process" evidence=IGI

GO:0052546 "cell wall pectin metabolic process" evidence=IGI

GO:0042732 "D-xylose metabolic process" evidence=RCA

TAIR|locus:2197945 UGD1 "UDP-glucose dehydrogenase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2116 (749.9 bits), Expect = 4.4e-219, P = 4.4e-219
 Identities = 399/481 (82%), Positives = 443/481 (92%)

Query:     1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
             MVKICCIGAGYVGGPTMAV+ALKCP+IEV VVDIS  RI AWN D+LPIYEPGLEDVV Q
Sbjct:     1 MVKICCIGAGYVGGPTMAVMALKCPEIEVVVVDISEPRINAWNSDRLPIYEPGLEDVVKQ 60

Query:    61 CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
             CRG+NLFFSTD+EKHV E+DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA+VS S+
Sbjct:    61 CRGKNLFFSTDVEKHVFESDIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIADVSKSS 120

Query:   121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
             KIVVEKSTVPV+TAEAIEKILTHNS+ I++QILSNPEFLAEGTAI+DL+NPDRVLIGGR+
Sbjct:   121 KIVVEKSTVPVRTAEAIEKILTHNSKGIEFQILSNPEFLAEGTAIKDLYNPDRVLIGGRD 180

Query:   181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
             T  GQKAI+AL+DVYAHWVP ++II TNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct:   181 TAAGQKAIKALRDVYAHWVPVEQIICTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240

Query:   241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
             GADVTQV+HA+G DTRIGP+FLN+SVGFGGSCFQKDILNL+YICECNGL E ANYWKQV+
Sbjct:   241 GADVTQVAHAVGTDTRIGPKFLNASVGFGGSCFQKDILNLIYICECNGLPEAANYWKQVV 300

Query:   301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
             KVNDYQK RF NR+VSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVC  L+ DKAKL
Sbjct:   301 KVNDYQKIRFANRVVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCNRLVADKAKL 360

Query:   361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPA-SKQVNVVWDAYQAAKDAHGVCIL 419
             SIYDPQV E+QI+RDLSM +FDWDHP+ LQ +     S+QVNVV DAY+A KDAHG+C+L
Sbjct:   361 SIYDPQVLEEQIRRDLSMARFDWDHPVPLQQIKAEGISEQVNVVSDAYEATKDAHGLCVL 420

Query:   420 TEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAV 479
             TEWDEFK+LD++KIFDNM+KPA++FDGRN++D  KLREIGFIVYSIGKPLD W KD  AV
Sbjct:   421 TEWDEFKSLDFKKIFDNMQKPAFVFDGRNVVDAVKLREIGFIVYSIGKPLDSWLKDMPAV 480

Query:   480 A 480
             A
Sbjct:   481 A 481

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003979 "UDP-glucose 6-dehydrogenase activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0050662 "coenzyme binding" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0261445 sgl "sugarless" [Drosophila melanogaster (taxid:7227)]

 Score = 1511 (537.0 bits), Expect = 5.6e-155, P = 5.6e-155
 Identities = 297/468 (63%), Positives = 362/468 (77%)

Query:     2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
             +K+CCIGAGYVGGPT AV+ALKCP I + +VD S  RIA WN D+LPIYEPGL++VV +C
Sbjct:     1 MKVCCIGAGYVGGPTCAVMALKCPDIVITLVDKSSERIAQWNSDKLPIYEPGLDEVVKKC 60

Query:    62 RGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNK 121
             R  NLFFSTDIE  + EAD++F+SVNTPTKT G G G+AADL Y ESAARMIA ++ SNK
Sbjct:    61 RNVNLFFSTDIETAIKEADLIFISVNTPTKTCGNGKGRAADLKYVESAARMIAEIAQSNK 120

Query:   122 IVVEKSTVPVKTAEAIEKILTHNSRE-IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
             IVVEKSTVPV+ AE+I  IL  N +  I Y ILSNPEFLAEGTAI DL N DRVLIGG E
Sbjct:   121 IVVEKSTVPVRAAESIMHILRANQKPGIHYDILSNPEFLAEGTAINDLLNADRVLIGGEE 180

Query:   181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
             TPEG +A++ L  +Y HW+P+  I+TTN WS+ELSKLAANAFLAQRISS+N++SA+CEAT
Sbjct:   181 TPEGHQAVEKLSWIYEHWIPKQNILTTNTWSSELSKLAANAFLAQRISSINSLSAVCEAT 240

Query:   241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
             GADV++V+ A+G D+RIG +FL +SVGFGGSCFQKDILNL+YICE   L EVA YW+QVI
Sbjct:   241 GADVSEVARAVGLDSRIGSKFLQASVGFGGSCFQKDILNLIYICENLNLPEVAAYWQQVI 300

Query:   301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
              +N+YQK RF  +I+ S+FNTVS K+IAILGFAFKK+TGDTRET AI VC+ LL + A L
Sbjct:   301 DMNEYQKRRFSQKIIESLFNTVSDKRIAILGFAFKKNTGDTRETAAITVCQTLLEEGAAL 360

Query:   361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPP-ASKQVNVVWDAYQAAKDAHGVCIL 419
              IYDP+V  +QI  DL+       HP   +  SP    K V +  D Y A +  H + I 
Sbjct:   361 DIYDPKVEPEQIIDDLT-------HPSVTE--SPEKVKKAVQIHSDPYSAVRATHALVIC 411

Query:   420 TEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGK 467
             TEWDEF  LD+++I+ +M KPAYIFDGR ILD E+L++IGF V +IGK
Sbjct:   412 TEWDEFVDLDFKRIYQSMMKPAYIFDGRKILDHERLQQIGFHVQTIGK 459

GO:0007367 "segment polarity determination" evidence=IMP

GO:0003979 "UDP-glucose 6-dehydrogenase activity" evidence=ISS;NAS;TAS

GO:0006024 "glycosaminoglycan biosynthetic process" evidence=NAS

GO:0015014 "heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process" evidence=NAS

GO:0007427 "epithelial cell migration, open tracheal system" evidence=TAS

GO:0015012 "heparan sulfate proteoglycan biosynthetic process" evidence=TAS

GO:0007166 "cell surface receptor signaling pathway" evidence=NAS

GO:0007509 "mesoderm migration involved in gastrulation" evidence=TAS

GO:0007224 "smoothened signaling pathway" evidence=TAS

GO:0007507 "heart development" evidence=NAS

GO:0016055 "Wnt receptor signaling pathway" evidence=TAS

GO:0030206 "chondroitin sulfate biosynthetic process" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0007428 "primary branching, open tracheal system" evidence=TAS

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0042048 "olfactory behavior" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0002121 "inter-male aggressive behavior" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

ZFIN|ZDB-GENE-011022-1 ugdh "UDP-glucose dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 1488 (528.9 bits), Expect = 1.5e-152, P = 1.5e-152
 Identities = 288/468 (61%), Positives = 360/468 (76%)

Query:     3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
             KICCIGAGYVGGPT +VIA  CP+I V VVD++ SRI AWN D LPIYEPGL +VV  CR
Sbjct:     6 KICCIGAGYVGGPTCSVIASMCPEITVTVVDVNESRIKAWNSDTLPIYEPGLNEVVLSCR 65

Query:    63 GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
             G+NLFFSTDI+  + EAD+VF+SVNTPTKT G+G G+AADL + E+ AR I  VS+  KI
Sbjct:    66 GKNLFFSTDIDSAIKEADLVFISVNTPTKTYGMGKGRAADLKFIEACARRIVEVSDGYKI 125

Query:   123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
             V EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTA++DL  PDRVLIGG ET
Sbjct:   126 VTEKSTVPVRAAESIRRIFDANTKPSLNLQVLSNPEFLAEGTAVKDLKEPDRVLIGGDET 185

Query:   182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
             PEGQ+AI AL  VY HWVP+ RIITTN WS+ELSKLAANAFLAQRISS+N++SALCE+TG
Sbjct:   186 PEGQRAISALCAVYEHWVPKTRIITTNTWSSELSKLAANAFLAQRISSINSISALCESTG 245

Query:   242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
             ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA+YW+QVI 
Sbjct:   246 ADVEEVARAIGMDQRIGSKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVASYWQQVID 305

Query:   302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
             +N+YQ+ RF  RI+  +FNTV+GKKIA+LGF+FKKDTGDTRE+ +I + K L+ + AKL 
Sbjct:   306 MNEYQRKRFTCRIIDCLFNTVTGKKIALLGFSFKKDTGDTRESSSIYISKYLMDEGAKLH 365

Query:   362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
             IYDP+V ++QI +DLS      D+P  +  +       V V  D Y+A + AH + I TE
Sbjct:   366 IYDPKVLKEQIIQDLSQPGISGDNPERVSDL-------VTVTVDPYEACESAHALVICTE 418

Query:   422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILDV--EKLREIGFIVYSIGK 467
             WD FK LDY+KI+  M KPA+IFDGR +L+    +L+ +GF + +IGK
Sbjct:   419 WDMFKDLDYEKIYHKMLKPAFIFDGRRVLNHLHTQLQNVGFQIETIGK 466

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003979 "UDP-glucose 6-dehydrogenase activity" evidence=IEA

GO:0003188 "heart valve formation" evidence=IMP

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q5F3T9 UGDH "UDP-glucose 6-dehydrogenase" [Gallus gallus (taxid:9031)]

 Score = 1484 (527.5 bits), Expect = 4.1e-152, P = 4.1e-152
 Identities = 291/468 (62%), Positives = 360/468 (76%)

Query:     3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
             KICCIGAGYVGGPT +VIA  CPKI+V VVD++ +RI AWN D LPIYEPGL++VV  CR
Sbjct:     6 KICCIGAGYVGGPTCSVIAQMCPKIQVTVVDVNEARINAWNSDTLPIYEPGLKEVVESCR 65

Query:    63 GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
             GRNLFFST I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KI
Sbjct:    66 GRNLFFSTSIDDAIREADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125

Query:   123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
             V EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ++
Sbjct:   126 VTEKSTVPVRAAESIRRIFDANTKPNLDLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDDS 185

Query:   182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
             PEGQKA++AL  VY HWVP+++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct:   186 PEGQKAVRALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245

Query:   242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
             ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct:   246 ADVEEVARAIGTDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305

Query:   302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
             +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + AKL 
Sbjct:   306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAKLH 365

Query:   362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
             IYDP+V ++QI  DLS      D+ +         S+ V +  D Y+A   AH + I TE
Sbjct:   366 IYDPKVPKEQIILDLSHPGVSEDNQV---------SRLVTISQDPYEACDGAHALVICTE 416

Query:   422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILDV--EKLREIGFIVYSIGK 467
             WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct:   417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDDLHNELQVIGFQIETIGK 464

GO:0051287 "NAD binding" evidence=IEA

GO:0003979 "UDP-glucose 6-dehydrogenase activity" evidence=IEA

GO:0006065 "UDP-glucuronate biosynthetic process" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=ISS

UNIPROTKB|I3LIM2 UGDH "UDP-glucose 6-dehydrogenase" [Sus scrofa (taxid:9823)]

 Score = 1474 (523.9 bits), Expect = 4.7e-151, P = 4.7e-151
 Identities = 292/468 (62%), Positives = 358/468 (76%)

Query:     3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
             KICCIGAGYVGGPT +VIALKCP+I V VVD++ SRI AWN   LPIYEPGL++VV  CR
Sbjct:     6 KICCIGAGYVGGPTCSVIALKCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65

Query:    63 GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
             G+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S+  KI
Sbjct:    66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKI 125

Query:   123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
             V EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAIQDL  PDRVLIGG ET
Sbjct:   126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIQDLKYPDRVLIGGDET 185

Query:   182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
             PEGQ+A+QAL  VY HWVP+++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct:   186 PEGQRAVQALCAVYEHWVPKEKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245

Query:   242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
             ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct:   246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305

Query:   302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
             +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L 
Sbjct:   306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365

Query:   362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
             IYDP+V  +QI  DLS       HP   +      ++ V +  D Y+A   AH V I TE
Sbjct:   366 IYDPKVPREQIVVDLS-------HPGVSE--DDQVARLVTISKDPYEACDGAHAVVICTE 416

Query:   422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILDV--EKLREIGFIVYSIGK 467
             WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct:   417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

GO:0001702 "gastrulation with mouth forming second" evidence=IEA

GO:0003979 "UDP-glucose 6-dehydrogenase activity" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|O60701 UGDH "UDP-glucose 6-dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 1472 (523.2 bits), Expect = 7.6e-151, P = 7.6e-151
 Identities = 292/468 (62%), Positives = 356/468 (76%)

Query:     3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
             KICCIGAGYVGGPT +VIA  CP+I V VVD++ SRI AWN   LPIYEPGL++VV  CR
Sbjct:     6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65

Query:    63 GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
             G+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KI
Sbjct:    66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125

Query:   123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
             V EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct:   126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185

Query:   182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
             PEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct:   186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245

Query:   242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
             ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct:   246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305

Query:   302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
             +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L 
Sbjct:   306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365

Query:   362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
             IYDP+V  +QI  DLS       HP   +      S+ V +  D Y+A   AH V I TE
Sbjct:   366 IYDPKVPREQIVVDLS-------HPGVSE--DDQVSRLVTISKDPYEACDGAHAVVICTE 416

Query:   422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILDV--EKLREIGFIVYSIGK 467
             WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct:   417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

GO:0051287 "NAD binding" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IEA

GO:0009055 "electron carrier activity" evidence=TAS

GO:0006065 "UDP-glucuronate biosynthetic process" evidence=IEA;TAS

GO:0006011 "UDP-glucose metabolic process" evidence=TAS

GO:0006024 "glycosaminoglycan biosynthetic process" evidence=TAS

GO:0003979 "UDP-glucose 6-dehydrogenase activity" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006805 "xenobiotic metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|E2R311 UGDH "UDP-glucose 6-dehydrogenase" [Canis lupus familiaris (taxid:9615)]

 Score = 1470 (522.5 bits), Expect = 1.2e-150, P = 1.2e-150
 Identities = 292/468 (62%), Positives = 356/468 (76%)

Query:     3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
             KICCIGAGYVGGPT +VIA  CP+I V VVD++ SRI AWN   LPIYEPGL++VV  CR
Sbjct:     6 KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65

Query:    63 GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
             G+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   S+  KI
Sbjct:    66 GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSHGYKI 125

Query:   123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
             V EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct:   126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185

Query:   182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
             PEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct:   186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245

Query:   242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
             ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct:   246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305

Query:   302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
             +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L 
Sbjct:   306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365

Query:   362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
             IYDP+V  +QI  DLS       HP   Q      S+ V +  D Y+A   AH V I TE
Sbjct:   366 IYDPKVPREQIVVDLS-------HPGVSQ--DDQVSRLVTISKDPYEACDGAHAVVICTE 416

Query:   422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILDV--EKLREIGFIVYSIGK 467
             WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct:   417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

GO:0001702 "gastrulation with mouth forming second" evidence=IEA

GO:0003979 "UDP-glucose 6-dehydrogenase activity" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q96558	UGDH_SOYBN	1, ., 1, ., 1, ., 2, 2	0.8812	1.0	1.0	no	no
O86422	UDG_PSEAE	1, ., 1, ., 1, ., 2, 2	0.3375	0.9020	0.9558	yes	no
Q9LIA8	UGDH1_ARATH	1, ., 1, ., 1, ., 2, 2	0.8666	1.0	1.0	yes	no
O05973	UDG_RICPR	1, ., 1, ., 1, ., 2, 2	0.3304	0.8895	0.9838	yes	no
O32271	TUAD_BACSU	1, ., 1, ., 1, ., 2, 2	0.3615	0.8895	0.9262	yes	no
O60701	UGDH_HUMAN	1, ., 1, ., 1, ., 2, 2	0.6217	0.95	0.9230	yes	no
Q5F3T9	UGDH_CHICK	1, ., 1, ., 1, ., 2, 2	0.6217	0.95	0.9230	yes	no
Q92GB1	UDG_RICCN	1, ., 1, ., 1, ., 2, 2	0.3489	0.8958	0.9953	yes	no
Q1RKF8	UDG_RICBR	1, ., 1, ., 1, ., 2, 2	0.3319	0.8937	0.9884	yes	no
Q68VX0	UDG_RICTY	1, ., 1, ., 1, ., 2, 2	0.3410	0.8833	0.9769	yes	no
Q4UK39	UDG_RICFE	1, ., 1, ., 1, ., 2, 2	0.3312	0.9020	0.9665	yes	no
P12378	UGDH_BOVIN	1, ., 1, ., 1, ., 2, 2	0.6175	0.95	0.9230	yes	no
Q5R7B3	UGDH_PONAB	1, ., 1, ., 1, ., 2, 2	0.6196	0.95	0.9230	yes	no
Q19905	UGDH_CAEEL	1, ., 1, ., 1, ., 2, 2	0.5774	0.9520	0.9501	yes	no
Q9FM01	UGDH2_ARATH	1, ., 1, ., 1, ., 2, 2	0.8702	0.9958	0.9958	no	no
O54068	UDG_RHIME	1, ., 1, ., 1, ., 2, 2	0.3553	0.9020	0.9908	yes	no
O02373	UGDH_DROME	1, ., 1, ., 1, ., 2, 2	0.6316	0.9541	0.9621	yes	no
O70475	UGDH_MOUSE	1, ., 1, ., 1, ., 2, 2	0.6175	0.95	0.9249	yes	no
D4GYH5	AGLM_HALVD	1, ., 1, ., 1, ., 2, 2	0.3255	0.8604	0.9604	yes	no
O70199	UGDH_RAT	1, ., 1, ., 1, ., 2, 2	0.6132	0.95	0.9249	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.998
4th Layer	1.1.1.22	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	Sb01g043150.1	hypothetical protein (481 aa)
		(Sorghum bicolor)
Predicted Functional Partners:
	Sb04g035630.1	hypothetical protein (440 aa)	•					•	•		0.932
	Sb02g029130.1	hypothetical protein (494 aa)	•					•	•		0.923
	Sb01g041030.1	hypothetical protein (481 aa)	•					•	•		0.922
	Sb03g047200.1	hypothetical protein (397 aa)	•					•			0.916
	Sb01g035380.1	hypothetical protein (355 aa)	•					•			0.910
	Sb02g021780.1	hypothetical protein (367 aa)	•					•			0.910
	Sb09g008220.1	hypothetical protein (666 aa)	•			•		•			0.909
	Sb01g039220.1	hypothetical protein (673 aa)	•			•		•			0.909
	Sb01g039340.1	hypothetical protein (673 aa)	•			•		•			0.909
	Sb02g030500.1	hypothetical protein (364 aa)	•					•			0.908

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	480
PLN02353	473	PLN02353, PLN02353, probable UDP-glucose 6-dehydro	0.0
COG1004	414	COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenas	1e-127
TIGR03026	409	TIGR03026, NDP-sugDHase, nucleotide sugar dehydrog	1e-112
pfam03721	188	pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose	9e-71
COG0677	436	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate de	1e-49
pfam00984	96	pfam00984, UDPG_MGDP_dh, UDP-glucose/GDP-mannose d	5e-39
pfam03720	103	pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose	3e-35
smart00984	99	smart00984, UDPG_MGDP_dh_C, UDP binding domain	7e-31
PRK15057	388	PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; P	2e-24
PRK11064	415	PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydro	5e-24
PRK15182	425	PRK15182, PRK15182, Vi polysaccharide biosynthesis	5e-18

>gnl|CDD|177986 PLN02353, PLN02353, probable UDP-glucose 6-dehydrogenase

 Score = 1066 bits (2760), Expect = 0.0
 Identities = 423/472 (89%), Positives = 453/472 (95%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           MVKICCIGAGYVGGPTMAVIALKCP IEV VVDISV RI AWN DQLPIYEPGL++VV Q
Sbjct: 1   MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQ 60

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
           CRG+NLFFSTD+EKHVAEADIVFVSVNTPTKT+GLGAGKAADLTYWESAARMIA+VS S+
Sbjct: 61  CRGKNLFFSTDVEKHVAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSD 120

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
           KIVVEKSTVPVKTAEAIEKILTHNS+ I +QILSNPEFLAEGTAI+DLF PDRVLIGGRE
Sbjct: 121 KIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIEDLFKPDRVLIGGRE 180

Query: 181 TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240
           TPEGQKA+QALKDVYAHWVPE+RIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT
Sbjct: 181 TPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT 240

Query: 241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI 300
           GADV+QVSHA+GKD+RIGP+FLN+SVGFGGSCFQKDILNLVYICECNGL EVA YWKQVI
Sbjct: 241 GADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVI 300

Query: 301 KVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360
           K+NDYQK+RFVNR+VSSMFNTVSGKKIA+LGFAFKKDTGDTRETPAIDVCKGLLGDKAKL
Sbjct: 301 KMNDYQKSRFVNRVVSSMFNTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKL 360

Query: 361 SIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILT 420
           SIYDPQVTE+QIQRDLSM KFDWDHP HLQPMSP A KQV+VVWDAY+A K AHG+CILT
Sbjct: 361 SIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVWDAYEATKGAHGICILT 420

Query: 421 EWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPW 472
           EWDEFKTLDYQKI+DNM+KPA++FDGRN+LD EKLREIGFIVYSIGKPLDPW
Sbjct: 421 EWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLREIGFIVYSIGKPLDPW 472

Length = 473

>gnl|CDD|223936 COG1004, Ugd, Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

 Score =  376 bits (967), Expect = e-127
 Identities = 176/455 (38%), Positives = 259/455 (56%), Gaps = 46/455 (10%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           KI  IG GYVG  T A +A    ++  EV  VDI  S++   N    PIYEPGLE+++ +
Sbjct: 2   KITVIGTGYVGLVTGACLA----ELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKE 57

Query: 61  CRG-RNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNS 119
                 L F+TD E+ V +AD+VF++V TP    G     +ADL+Y E+ A+ I  + + 
Sbjct: 58  NLASGRLRFTTDYEEAVKDADVVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDG 112

Query: 120 NKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGR 179
             +VV KSTVPV T E +   +   +    +++ SNPEFL EG+A+ D   PDR++IG R
Sbjct: 113 KAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSAVYDFLYPDRIVIGVR 172

Query: 180 ETPEGQKAIQALKDVYAHWVPED-RIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238
                ++A   L+++YA ++ +D  I+ T+L  AEL K AANAFLA +IS +N ++ +CE
Sbjct: 173 S----ERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICE 228

Query: 239 ATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQ 298
             GADV QV+  IG D RIG  FLN+  G+GGSCF KD   L+   E  G     N  + 
Sbjct: 229 KVGADVKQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAEELG--YDPNLLEA 286

Query: 299 VIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA 358
           V++VN+ +K++   +I++ +   + GK IA+LG AFK +T D RE+PA+D+ K L    A
Sbjct: 287 VVEVNERRKDKLAEKILNHL--GLKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGA 344

Query: 359 KLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCI 418
           ++  YDP   E       +  +              P  +  +   DA +A K A  + I
Sbjct: 345 EVIAYDPVAME-------NAFRN------------FPDVELES---DAEEALKGADAIVI 382

Query: 419 LTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE 453
            TEWDEF+ LD++K+   M+ P  + DGRNI D +
Sbjct: 383 NTEWDEFRDLDFEKLL--MKTPV-VIDGRNIFDPD 414

Length = 414

>gnl|CDD|234094 TIGR03026, NDP-sugDHase, nucleotide sugar dehydrogenase

 Score =  337 bits (867), Expect = e-112
 Identities = 157/450 (34%), Positives = 232/450 (51%), Gaps = 46/450 (10%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KI  IG GYVG P  A++A      +V  VDI   ++   N  + PIYEPGL++++ +  
Sbjct: 2   KIAVIGLGYVGLPLAALLADL--GHDVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKAL 59

Query: 63  GRNLF-FSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNK 121
                  +TD E+ + +AD++ + V TP K  G     + DL+Y ESAA  IA       
Sbjct: 60  KAGRLRATTDYEEAIRDADVIIICVPTPLKEDG-----SPDLSYVESAAETIAKHLRKGA 114

Query: 122 IVVEKSTVPVKTAEAIEK-ILTHNS--REIKYQILSNPEFLAEGTAIQDLFNPDRVLIGG 178
            VV +STVP  T E + K IL  +       + +  NPEFL EG A+ DL +PDR++ G 
Sbjct: 115 TVVLESTVPPGTTEEVVKPILERSGLKLGEDFYLAYNPEFLREGNAVHDLLHPDRIVGG- 173

Query: 179 RETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238
            ET E   A +A+ ++Y+  + +  ++ T++ +AE+ KLA N F A +I+  N ++ +CE
Sbjct: 174 -ETEE---AGEAVAELYSPII-DGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICE 228

Query: 239 ATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQ 298
           A G DV +V  A G D RIG  FLN   G GG C  KD L L+   +  G        + 
Sbjct: 229 ALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIAKAKELGYN--PELIEA 286

Query: 299 VIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA 358
             ++ND Q +  V +I   +   + GK + ILG AFK +T D RE+PA+D+ + L    A
Sbjct: 287 AREINDSQPDYVVEKIKDLLGA-LKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGA 345

Query: 359 KLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCI 418
           K+  YDP V E++++   S+                          D  +A K A  + I
Sbjct: 346 KVKAYDPLVPEEEVKGLPSID-------------------------DLEEALKGADALVI 380

Query: 419 LTEWDEFKTLDYQKIFDNMRKPAYIFDGRN 448
           LT+  EFK LD +KI D M+    + D RN
Sbjct: 381 LTDHSEFKDLDLEKIKDLMKGKV-VVDTRN 409

Enzymes in this family catalyze the NAD-dependent alcohol-to-acid oxidation of nucleotide-linked sugars. Examples include UDP-glucose 6-dehydrogenase (1.1.1.22) , GDP-mannose 6-dehydrogenase (1.1.1.132) , UDP-N-acetylglucosamine 6-dehydrogenase (1.1.1.136), UDP-N-acetyl-D-galactosaminuronic acid dehydrogenase and UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase. These enzymes are most often involved in the biosynthesis of polysaccharides and are often found in operons devoted to that purpose. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. Length = 409

>gnl|CDD|217692 pfam03721, UDPG_MGDP_dh_N, UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain

 Score =  222 bits (568), Expect = 9e-71
 Identities = 82/193 (42%), Positives = 113/193 (58%), Gaps = 11/193 (5%)

Query: 2   VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
           ++I  IG GYVG PT   +A      +V  VDI+ S+I   N  ++PIYEPGLE+++   
Sbjct: 1   MRIAVIGLGYVGLPTAVCLAEIG--HDVVGVDINQSKIDKLNNGKIPIYEPGLEELLKAN 58

Query: 62  R-GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
                L F+TD+ + + EAD++F++V TP+K  G     A DLTY ESAAR I  V    
Sbjct: 59  VETGRLRFTTDVAEAIKEADVIFIAVPTPSKKDG----GAPDLTYVESAARTIGPVLKKG 114

Query: 121 KIVVEKSTVPVKTAEA-IEKILTHNSR---EIKYQILSNPEFLAEGTAIQDLFNPDRVLI 176
           K+VV KSTVP  T E  ++ IL   S     + + + SNPEFL EG A+ DL NPDRV+I
Sbjct: 115 KVVVVKSTVPPGTTEEVVKPILEKRSGKKFGVDFNVASNPEFLREGNALHDLLNPDRVVI 174

Query: 177 GGRETPEGQKAIQ 189
           G  E    ++  +
Sbjct: 175 GVTEECAEERLAE 187

The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 188

>gnl|CDD|223749 COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

 Score =  175 bits (445), Expect = 1e-49
 Identities = 138/474 (29%), Positives = 203/474 (42%), Gaps = 61/474 (12%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
              I  IG GYVG P  A  A      +V  VDI+  ++   N  +  I EP L++VV +
Sbjct: 9   SATIGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKE 66

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
                   +T   + + E D+  + V TP     L   +  DL+Y ESAAR IA V    
Sbjct: 67  AVESGKLRATTDPEELKECDVFIICVPTP-----LKKYREPDLSYVESAARSIAPVLKKG 121

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIK----YQILSNPEFLAEGTAIQDLFNPDRVLI 176
            +V+ +ST P  T E + K L      +K    + +  +PE +  G  +++L N  +V I
Sbjct: 122 DLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELVNNPKV-I 180

Query: 177 GGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSAL 236
           GG  TP+  +   AL   Y   V E  I  T+  +AE+ KL  N F    I+  N ++ +
Sbjct: 181 GG-VTPKCAELAAAL---YKTIV-EGVIPVTSARTAEMVKLTENTFRDVNIALANELALI 235

Query: 237 CEATGADVTQVSHAIGKDTRIGPRF--LNSSVGFGGSCFQKDILNLVYICECNG----LT 290
           C A G DV +V  A        PR        G GG C   D   L +     G    L 
Sbjct: 236 CNAMGIDVWEVIEAANTK----PRVNIFYPGPGVGGHCIPVDPYFLTWKAPEYGLPARLI 291

Query: 291 EVANYWKQVIKVNDYQKNRFVNRIVSSMFNT---VSGKKIAILGFAFKKDTGDTRETPAI 347
             A       ++ND      V+R+  ++      +SG KI +LG A+K D  D RE+PA+
Sbjct: 292 RTAR------EINDSMPRHVVDRVKEALNKAGKPLSGSKILVLGLAYKGDVDDLRESPAL 345

Query: 348 DVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAY 407
           D+ + L     ++ +YDP V E          + D +               V +     
Sbjct: 346 DIIELLEEWGGEVLVYDPYVKELP-------TREDGEG--------------VTLAILE- 383

Query: 408 QAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFI 461
           +A KDA  V I T+  EFK +DY+ I    +    I D RN+   E+    G  
Sbjct: 384 EALKDADAVVIATDHSEFKEIDYEAIGKEAK---VIVDTRNVWKREREAAKGIG 434

Length = 436

>gnl|CDD|201536 pfam00984, UDPG_MGDP_dh, UDP-glucose/GDP-mannose dehydrogenase family, central domain

 Score =  136 bits (344), Expect = 5e-39
 Identities = 49/98 (50%), Positives = 62/98 (63%), Gaps = 2/98 (2%)

Query: 209 LWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGF 268
           L +AE+ K AANAFLA +IS +N ++ +CEA GADV++V+ A G D RIG +FLN   GF
Sbjct: 1   LKTAEMIKYAANAFLATKISFINELANICEAVGADVSEVARAAGLDPRIGRKFLNPGPGF 60

Query: 269 GGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQ 306
           GGSCF KD   L Y  E  GL        +V+ VN  Q
Sbjct: 61  GGSCFPKDPYALTYKAEELGLPAR--LLGRVVNVNMPQ 96

The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 96

>gnl|CDD|217691 pfam03720, UDPG_MGDP_dh_C, UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain

 Score =  126 bits (319), Expect = 3e-35
 Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 21/124 (16%)

Query: 328 AILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPI 387
           A+LG AFK +T D RE+PA+D+ + LL + A++ +YDP V E+ I+              
Sbjct: 1   AVLGLAFKPNTDDLRESPALDIIEELLEEGAEVVVYDPYVPEEAIEALG----------- 49

Query: 388 HLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447
                       V +V D  +A K A  + ILT+ DEF++LD+ KI   M+ P  +FDGR
Sbjct: 50  ---------EDGVTLVDDLEEALKGADAIVILTDHDEFRSLDWAKIKKLMKPP-VVFDGR 99

Query: 448 NILD 451
           N+LD
Sbjct: 100 NVLD 103

The UDP-glucose/GDP-mannose dehydrogenaseses are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 103

>gnl|CDD|214954 smart00984, UDPG_MGDP_dh_C, UDP binding domain

 Score =  114 bits (288), Expect = 7e-31
 Identities = 45/124 (36%), Positives = 67/124 (54%), Gaps = 25/124 (20%)

Query: 328 AILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPI 387
           A+LG AFK +T D RE+PA+D+ + LL   A++ +YDP   E+        +++      
Sbjct: 1   AVLGLAFKPNTDDLRESPALDIIEELLEAGAEVVVYDPYAMEE-------AREYG----- 48

Query: 388 HLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR 447
                       +  V D  +A K A  V I TE DEF++LD +++ D M+KP  + DGR
Sbjct: 49  ------------LTYVSDLEEALKGADAVVIATEHDEFRSLDPEELKDLMKKPV-VVDGR 95

Query: 448 NILD 451
           NILD
Sbjct: 96  NILD 99

The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate. Length = 99

>gnl|CDD|185017 PRK15057, PRK15057, UDP-glucose 6-dehydrogenase; Provisional

 Score =  104 bits (261), Expect = 2e-24
 Identities = 106/389 (27%), Positives = 173/389 (44%), Gaps = 42/389 (10%)

Query: 2   VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
           +KI   G GYVG     +IA      EV  +DI  SR+A  N    PI +  ++  +   
Sbjct: 1   MKITISGTGYVGLSNGLLIA---QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFL--- 54

Query: 62  RGRNLFFSTDIEKHVAEADIVFVSVNTPT----KTQGLGAGKAADLTYWESAARMIANVS 117
           +   + F+  ++K+ A  D  +V + TPT    KT              ES  + +  + 
Sbjct: 55  QSDKIHFNATLDKNEAYRDADYVIIATPTDYDPKTNYFNTSSV------ESVIKDVVEI- 107

Query: 118 NSNKIVVEKSTVPVK-TAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLI 176
           N   ++V KSTVPV  TA   +K  T N       I+ +PEFL EG A+ D  +P R++I
Sbjct: 108 NPYAVMVIKSTVPVGFTAAMHKKYRTEN-------IIFSPEFLREGKALYDNLHPSRIVI 160

Query: 177 GGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSAL 236
           G R     + A    +      +P    + T+   AE  KL AN +LA R++  N + + 
Sbjct: 161 GERSERAERFAALLQEGAIKQNIP---TLFTDSTEAEAIKLFANTYLAMRVAYFNELDSY 217

Query: 237 CEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYW 296
            E+ G +  Q+   +  D RIG  + N S G+GG C  KD   L+     N  +   N  
Sbjct: 218 AESLGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL----ANYQSVPNNLI 273

Query: 297 KQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGD 356
             ++  N  +K+   + I+S        + + I     K  + + R +    + K +   
Sbjct: 274 SAIVDANRTRKDFIADAILSR-----KPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAK 328

Query: 357 KAKLSIYDPQVTED-----QIQRDLSMKK 380
             ++ IY+P + ED     +++RDL+  K
Sbjct: 329 GVEVIIYEPVMKEDSFFNSRLERDLATFK 357

Length = 388

>gnl|CDD|182940 PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

 Score =  103 bits (259), Expect = 5e-24
 Identities = 106/372 (28%), Positives = 165/372 (44%), Gaps = 48/372 (12%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC- 61
            I  IG GY+G PT A  A +  + +V  VDI+   +   N  ++ I EP L+ VV    
Sbjct: 5   TISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAV 62

Query: 62  RGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNK 121
            G  L  +T  E     AD   ++V TP K          DLTY E+AA+ IA V     
Sbjct: 63  EGGYLRATTTPE----PADAFLIAVPTPFK-----GDHEPDLTYVEAAAKSIAPVLKKGD 113

Query: 122 IVVEKSTVPVKTAEAIEKIL----------THNSREIKYQILSNPEFLAEGTAIQDLFNP 171
           +V+ +ST PV   E + + L               +    I   PE +  G  + +L   
Sbjct: 114 LVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVELIKN 173

Query: 172 DRVLIGGRETPE-GQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSV 230
           DRV IGG  TP    +A     ++Y  ++ E   + TN  +AE+ KL  N+F    I+  
Sbjct: 174 DRV-IGGM-TPVCSARAS----ELYKIFL-EGECVVTNSRTAEMCKLTENSFRDVNIAFA 226

Query: 231 NAMSALCEATGADVTQVSHAIGKDTRIGPR--FLNSSVGFGGSCFQKDILNLVYICECNG 288
           N +S +C   G +V ++   I    R  PR   L    G GG C   D   +V       
Sbjct: 227 NELSLICADQGINVWEL---IRLANR-HPRVNILQPGPGVGGHCIAVDPWFIVAQN---- 278

Query: 289 LTEVANYWKQVIKVNDYQKNRFVNRIVSSM--FNTVSGK-----KIAILGFAFKKDTGDT 341
             + A   +   +VND + +  ++++ +++      + K     KIA  G AFK +  D 
Sbjct: 279 -PQQARLIRTAREVNDGKPHWVIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDL 337

Query: 342 RETPAIDVCKGL 353
           RE+PA+++ + +
Sbjct: 338 RESPAMEIAELI 349

Length = 415

>gnl|CDD|185104 PRK15182, PRK15182, Vi polysaccharide biosynthesis protein TviB; Provisional

 Score = 85.9 bits (212), Expect = 5e-18
 Identities = 107/389 (27%), Positives = 165/389 (42%), Gaps = 45/389 (11%)

Query: 2   VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAW-NGDQLPIYEPGLEDVVT 59
           VKI  IG GYVG P    +A++  K  +V   D++  RI    NG      +  LE    
Sbjct: 7   VKIAIIGLGYVGLP----LAVEFGKSRQVVGFDVNKKRILELKNG-----VDVNLETTEE 57

Query: 60  QCR-GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSN 118
           + R  R L F+++IEK + E +   ++V TP  T      K  DLT    A+  +  V N
Sbjct: 58  ELREARYLKFTSEIEK-IKECNFYIITVPTPINTY-----KQPDLTPLIKASETVGTVLN 111

Query: 119 SNKIVVEKSTV-PVKTAEAIEKILTHNSREI---KYQILSNPEFLAEGTAIQDLFNPDRV 174
              IVV +STV P  T E    IL   S       + +  +PE +  G     L N  ++
Sbjct: 112 RGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRLTNIKKI 171

Query: 175 LIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMS 234
             G        +  + + +VY   +        ++  AE +K+  N      I+ VN ++
Sbjct: 172 TSGST-----AQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELA 226

Query: 235 ALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGF-GGSCFQKDILNLVYICECNGLTEVA 293
            +      D   V  A G        FL    G  GG C   D   L +  +  G     
Sbjct: 227 IIFNRLNIDTEAVLRAAGSKWN----FLPFRPGLVGGHCIGVDPYYLTHKSQGIG----- 277

Query: 294 NYWKQVI----KVNDYQKNRFVNRIVSSMFN---TVSGKKIAILGFAFKKDTGDTRETPA 346
            Y+ ++I    ++ND   N    +++ +M      V G  + ILGF FK++  D R T  
Sbjct: 278 -YYPEIILAGRRLNDNMGNYVSEQLIKAMIKKGINVEGSSVLILGFTFKENCPDIRNTRI 336

Query: 347 IDVCKGLLGDKAKLSIYDPQVTEDQIQRD 375
           IDV K L     K+ I+DP V  ++++R+
Sbjct: 337 IDVVKELGKYSCKVDIFDPWVDAEEVRRE 365

Length = 425

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	480
PLN02353	473	probable UDP-glucose 6-dehydrogenase	100.0
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	100.0
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	100.0
KOG2666	481	consensus UDP-glucose/GDP-mannose dehydrogenase [C	100.0
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	100.0
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	100.0
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	100.0
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	100.0
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	100.0
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	100.0
PLN02858	1378	fructose-bisphosphate aldolase	100.0
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.97
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.96
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.96
KOG0409	327	consensus Predicted dehydrogenase [General functio	99.96
PRK15059	292	tartronate semialdehyde reductase; Provisional	99.96
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	99.96
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.94
PLN02858	1378	fructose-bisphosphate aldolase	99.94
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	99.94
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	99.94
PF00984	96	UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas	99.93
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.92
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	99.92
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	99.9
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	99.89
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	99.88
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.86
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	99.85
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.85
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	99.8
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	99.8
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.79
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	99.79
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	99.78
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.78
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	99.78
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	99.76
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	99.74
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	99.73
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	99.73
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.72
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.69
PRK08507	275	prephenate dehydrogenase; Validated	99.68
PLN02712	667	arogenate dehydrogenase	99.68
PRK07417	279	arogenate dehydrogenase; Reviewed	99.67
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	99.66
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	99.65
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	99.65
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.64
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	99.64
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.63
PRK08655	437	prephenate dehydrogenase; Provisional	99.62
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.62
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.6
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	99.6
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.58
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	99.56
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	99.54
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	99.54
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	99.5
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	99.5
PLN02688	266	pyrroline-5-carboxylate reductase	99.48
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	99.46
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	99.46
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	99.43
PRK11730	715	fadB multifunctional fatty acid oxidation complex	99.42
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	99.42
PRK06545	359	prephenate dehydrogenase; Validated	99.41
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	99.4
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	99.39
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	99.39
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	99.38
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	99.38
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	99.37
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	99.37
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	99.36
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	99.36
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	99.31
PLN02256	304	arogenate dehydrogenase	99.31
PRK07680	273	late competence protein ComER; Validated	99.29
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	99.28
PRK08818	370	prephenate dehydrogenase; Provisional	99.25
PLN02712	667	arogenate dehydrogenase	99.24
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	99.22
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	99.22
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	99.18
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	99.18
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	99.18
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	99.15
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	99.12
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	99.11
PTZ00431	260	pyrroline carboxylate reductase; Provisional	99.1
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	99.08
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	99.06
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	98.98
TIGR00745	293	apbA_panE 2-dehydropantoate 2-reductase. This mode	98.97
KOG2305	313	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	98.96
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	98.96
PRK05479	330	ketol-acid reductoisomerase; Provisional	98.93
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	98.92
COG4007	340	Predicted dehydrogenase related to H2-forming N5,N	98.86
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	98.86
PRK12480	330	D-lactate dehydrogenase; Provisional	98.81
PRK06223	307	malate dehydrogenase; Reviewed	98.77
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	98.71
PRK07574	385	formate dehydrogenase; Provisional	98.69
PLN03139	386	formate dehydrogenase; Provisional	98.66
PRK08605	332	D-lactate dehydrogenase; Validated	98.66
PRK13243	333	glyoxylate reductase; Reviewed	98.65
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.61
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	98.57
PRK13403	335	ketol-acid reductoisomerase; Provisional	98.57
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.57
PRK06436	303	glycerate dehydrogenase; Provisional	98.55
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	98.55
PRK13304	265	L-aspartate dehydrogenase; Reviewed	98.55
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	98.48
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.48
PF14833	122	NAD_binding_11: NAD-binding of NADP-dependent 3-hy	98.46
PRK06444	197	prephenate dehydrogenase; Provisional	98.44
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	98.43
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	98.42
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	98.4
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	98.38
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	98.37
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	98.36
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	98.35
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	98.35
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	98.34
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	98.34
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.3
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	98.26
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	98.25
PTZ00082	321	L-lactate dehydrogenase; Provisional	98.24
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.23
TIGR00112	245	proC pyrroline-5-carboxylate reductase. This enzym	98.21
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	98.2
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.18
PRK15076	431	alpha-galactosidase; Provisional	98.16
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	98.15
PLN02928	347	oxidoreductase family protein	98.15
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	98.14
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	98.14
PLN02602	350	lactate dehydrogenase	98.12
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	98.11
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.11
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	98.1
PTZ00117	319	malate dehydrogenase; Provisional	98.08
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	98.06
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	98.05
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	98.04
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	98.02
PRK06141	314	ornithine cyclodeaminase; Validated	97.99
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.97
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	97.95
PLN02306	386	hydroxypyruvate reductase	97.91
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	97.91
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	97.9
PRK06932	314	glycerate dehydrogenase; Provisional	97.89
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.89
PRK00048	257	dihydrodipicolinate reductase; Provisional	97.82
PRK06487	317	glycerate dehydrogenase; Provisional	97.81
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.8
PRK05442	326	malate dehydrogenase; Provisional	97.79
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	97.79
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	97.77
PRK13303	265	L-aspartate dehydrogenase; Provisional	97.77
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	97.76
TIGR00036	266	dapB dihydrodipicolinate reductase.	97.75
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.75
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.74
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.74
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	97.74
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	97.7
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	97.68
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	97.62
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	97.61
PRK08618	325	ornithine cyclodeaminase; Validated	97.6
PTZ00075	476	Adenosylhomocysteinase; Provisional	97.6
PRK07340	304	ornithine cyclodeaminase; Validated	97.58
COG0569	225	TrkA K+ transport systems, NAD-binding component [	97.58
PRK04148	134	hypothetical protein; Provisional	97.57
PF10100	429	DUF2338: Uncharacterized protein conserved in bact	97.57
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	97.55
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	97.54
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.54
PTZ00325	321	malate dehydrogenase; Provisional	97.53
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	97.52
TIGR01757	387	Malate-DH_plant malate dehydrogenase, NADP-depende	97.52
PLN00112	444	malate dehydrogenase (NADP); Provisional	97.52
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	97.52
PRK11579	346	putative oxidoreductase; Provisional	97.5
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	97.49
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	97.49
PLN02494	477	adenosylhomocysteinase	97.49
COG0673	342	MviM Predicted dehydrogenases and related proteins	97.49
PRK05225	487	ketol-acid reductoisomerase; Validated	97.49
PRK06407	301	ornithine cyclodeaminase; Provisional	97.47
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	97.46
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	97.45
PRK05086	312	malate dehydrogenase; Provisional	97.44
cd00704	323	MDH Malate dehydrogenase. Malate dehydrogenase (MD	97.44
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.43
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.42
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	97.41
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	97.38
cd05296	419	GH4_P_beta_glucosidase Glycoside Hydrolases Family	97.38
PRK06823	315	ornithine cyclodeaminase; Validated	97.37
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.37
cd01336	325	MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli	97.37
PRK02318	381	mannitol-1-phosphate 5-dehydrogenase; Provisional	97.36
PRK06046	326	alanine dehydrogenase; Validated	97.36
PLN00106	323	malate dehydrogenase	97.33
PRK08291	330	ectoine utilization protein EutC; Validated	97.32
PRK07574	385	formate dehydrogenase; Provisional	97.31
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	97.29
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	97.28
PRK09496	453	trkA potassium transporter peripheral membrane com	97.27
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.26
PLN03139	386	formate dehydrogenase; Provisional	97.26
PRK07589	346	ornithine cyclodeaminase; Validated	97.25
TIGR01771	299	L-LDH-NAD L-lactate dehydrogenase. This model repr	97.25
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.24
COG2910	211	Putative NADH-flavin reductase [General function p	97.21
PRK10206	344	putative oxidoreductase; Provisional	97.21
PF02056	183	Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP	97.2
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.2
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	97.2
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	97.18
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	97.17
TIGR01758	324	MDH_euk_cyt malate dehydrogenase, NAD-dependent. T	97.16
PRK13243	333	glyoxylate reductase; Reviewed	97.13
PRK12480	330	D-lactate dehydrogenase; Provisional	97.11
PLN02928	347	oxidoreductase family protein	97.1
PLN00203	519	glutamyl-tRNA reductase	97.09
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	97.08
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	97.07
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	97.07
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.07
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.01
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	97.0
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	96.99
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	96.99
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	96.99
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	96.98
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	96.97
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	96.97
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	96.96
PRK08605	332	D-lactate dehydrogenase; Validated	96.93
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	96.93
PRK11861	673	bifunctional prephenate dehydrogenase/3-phosphoshi	96.92
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	96.91
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	96.91
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	96.88
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	96.86
KOG1495	332	consensus Lactate dehydrogenase [Energy production	96.86
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	96.84
PRK13403	335	ketol-acid reductoisomerase; Provisional	96.84
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.84
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.84
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	96.83
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	96.83
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	96.82
PRK06436	303	glycerate dehydrogenase; Provisional	96.81
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	96.81
COG0002	349	ArgC Acetylglutamate semialdehyde dehydrogenase [A	96.79
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.76
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	96.76
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.74
PRK13940	414	glutamyl-tRNA reductase; Provisional	96.73
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.73
PLN03075	296	nicotianamine synthase; Provisional	96.72
PRK15059	292	tartronate semialdehyde reductase; Provisional	96.7
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	96.69
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	96.69
PRK03659	601	glutathione-regulated potassium-efflux system prot	96.68
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	96.68
PRK06199	379	ornithine cyclodeaminase; Validated	96.68
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.67
cd05197	425	GH4_glycoside_hydrolases Glycoside Hydrases Family	96.67
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	96.67
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	96.66
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.65
PLN02306	386	hydroxypyruvate reductase	96.64
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.62
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.62
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	96.59
PRK08300	302	acetaldehyde dehydrogenase; Validated	96.59
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	96.58
CHL00194	317	ycf39 Ycf39; Provisional	96.57
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.56
COG1486	442	CelF Alpha-galactosidases/6-phospho-beta-glucosida	96.54
PRK06487	317	glycerate dehydrogenase; Provisional	96.52
PRK10669	558	putative cation:proton antiport protein; Provision	96.5
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	96.5
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	96.48
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.48
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	96.45
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.38
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	96.33
PLN02256	304	arogenate dehydrogenase	96.33
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	96.32
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	96.29
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.29
TIGR01723	340	hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr	96.28
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.27
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.26
PRK06932	314	glycerate dehydrogenase; Provisional	96.26
PRK14874	334	aspartate-semialdehyde dehydrogenase; Provisional	96.26
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	96.26
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	96.25
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	96.23
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.2
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.19
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	96.18
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	96.15
PRK03562	621	glutathione-regulated potassium-efflux system prot	96.14
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	96.13
PRK00961	342	H(2)-dependent methylenetetrahydromethanopterin de	96.11
KOG1502	327	consensus Flavonol reductase/cinnamoyl-CoA reducta	96.09
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.07
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	96.07
PRK06270	341	homoserine dehydrogenase; Provisional	96.07
KOG3124	267	consensus Pyrroline-5-carboxylate reductase [Amino	96.03
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.01
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	96.0
PRK07417	279	arogenate dehydrogenase; Reviewed	95.99
KOG1683	380	consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA	95.98
PRK09496	453	trkA potassium transporter peripheral membrane com	95.98
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.96
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.96
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.92
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.91
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.9
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.87
PRK05479	330	ketol-acid reductoisomerase; Provisional	95.86
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	95.85
PTZ00075	476	Adenosylhomocysteinase; Provisional	95.84
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	95.81
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.81
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.81
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.78
COG4408	431	Uncharacterized protein conserved in bacteria [Fun	95.78
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	95.77
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	95.74
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.73
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.73
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	95.71
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.7
PRK06349	426	homoserine dehydrogenase; Provisional	95.69
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.68
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.68
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.67
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	95.67
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	95.66
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.66
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.65
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.64
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	95.63
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.62
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	95.62
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.6
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	95.58
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.58
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	95.57
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.57
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	95.54
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	95.54
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.52
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	95.52
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.5
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	95.5
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.49
PRK11908	347	NAD-dependent epimerase/dehydratase family protein	95.48
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	95.47
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	95.46
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.45
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	95.44
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.44
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.42
COG2344	211	AT-rich DNA-binding protein [General function pred	95.41
PRK01581	374	speE spermidine synthase; Validated	95.4
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	95.39
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.37
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	95.36
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.35
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	95.34
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	95.34
TIGR00978	341	asd_EA aspartate-semialdehyde dehydrogenase (non-p	95.31
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	95.28
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	95.27
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.25
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.24
TIGR01082	448	murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a	95.22
PRK05671	336	aspartate-semialdehyde dehydrogenase; Reviewed	95.21
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	95.19
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.18
PRK14982	340	acyl-ACP reductase; Provisional	95.18
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	95.16
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.12
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	95.11
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	95.09
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	95.07
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	95.03
PRK08040	336	putative semialdehyde dehydrogenase; Provisional	95.01
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	95.0
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	94.99
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.99
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	94.98
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	94.98
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.97
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	94.93
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.93
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	94.92
PRK05868	372	hypothetical protein; Validated	94.89
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.89
PLN02688	266	pyrroline-5-carboxylate reductase	94.83
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.81
PRK06392	326	homoserine dehydrogenase; Provisional	94.81
PRK06728	347	aspartate-semialdehyde dehydrogenase; Provisional	94.8
PLN00203	519	glutamyl-tRNA reductase	94.78
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	94.78
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	94.78
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.76
PRK06753	373	hypothetical protein; Provisional	94.76
COG4091	438	Predicted homoserine dehydrogenase [Amino acid tra	94.75
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.72
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.72
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	94.71
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.71
PRK06598	369	aspartate-semialdehyde dehydrogenase; Reviewed	94.71
PRK00536	262	speE spermidine synthase; Provisional	94.7
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	94.69
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	94.67
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	94.63
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.6
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.59
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	94.56
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.49
TIGR03466	328	HpnA hopanoid-associated sugar epimerase. The sequ	94.48
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	94.48
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.42
PRK09414	445	glutamate dehydrogenase; Provisional	94.41
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	94.4
PLN00141	251	Tic62-NAD(P)-related group II protein; Provisional	94.38
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.37
PRK08655	437	prephenate dehydrogenase; Provisional	94.37
PTZ00188	506	adrenodoxin reductase; Provisional	94.37
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	94.35
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	94.35
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.33
PLN02383	344	aspartate semialdehyde dehydrogenase	94.33
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.32
PRK12779	944	putative bifunctional glutamate synthase subunit b	94.3
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	94.29
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.29
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.28
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.26
PLN02662	322	cinnamyl-alcohol dehydrogenase family protein	94.24
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	94.24
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	94.22
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.2
PLN02427	386	UDP-apiose/xylose synthase	94.16
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	94.15
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.14
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.08
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	94.07
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.06
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.06
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	94.05
PRK07588	391	hypothetical protein; Provisional	94.0
PRK07538	413	hypothetical protein; Provisional	94.0
PRK11728	393	hydroxyglutarate oxidase; Provisional	93.99
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.98
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.98
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	93.97
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	93.96
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.94
PRK06545	359	prephenate dehydrogenase; Validated	93.93
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	93.93
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	93.92
KOG0409	327	consensus Predicted dehydrogenase [General functio	93.92
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	93.9
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	93.9
PTZ00245	287	ubiquitin activating enzyme; Provisional	93.88
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	93.87
TIGR01296	339	asd_B aspartate-semialdehyde dehydrogenase (peptid	93.86
PRK08163	396	salicylate hydroxylase; Provisional	93.81
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	93.77
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	93.76
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	93.76
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	93.74
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	93.73
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	93.72
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.7
PRK12548	289	shikimate 5-dehydrogenase; Provisional	93.68
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	93.66
PRK07236	386	hypothetical protein; Provisional	93.65
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	93.64

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=100.00  E-value=9.9e-100  Score=790.62  Aligned_cols=473  Identities=89%  Similarity=1.406  Sum_probs=434.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ||||+|||+||||+++|..|++++.|++|+++|+|+++++.|++|..+++|+++++++.+...+++++|+++.+++++||
T Consensus         1 ~m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~ad   80 (473)
T PLN02353          1 MVKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEAD   80 (473)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCC
Confidence            79999999999999999999987446889999999999999999999999999999987643456999999988899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      ++|||||||.+.++.+.+..+|++++++++++|+++++++++||.+||+||||++.+.+.+.+.+.|.+|+++|+|||+.
T Consensus        81 vi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~  160 (473)
T PLN02353         81 IVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLA  160 (473)
T ss_pred             EEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccC
Confidence            99999999986543222458999999999999999999999999999999999999988777654367899999999999


Q ss_pred             ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHh
Q 011654          161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT  240 (480)
Q Consensus       161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~  240 (480)
                      ||++++++.+|++||+|+.++++.+++.++++++|+.+.+..++..+++++||++|+++|+|++++|+|+||++.+|+++
T Consensus       161 ~G~a~~d~~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~  240 (473)
T PLN02353        161 EGTAIEDLFKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT  240 (473)
T ss_pred             CCCcccccCCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999875444466889999999998744578889999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 011654          241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMFN  320 (480)
Q Consensus       241 Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~  320 (480)
                      |+|+++|+++++++||+|++|++||+||||||||||+++|.+.++++|+++.++++++++++|++||.++++++++.+.+
T Consensus       241 giD~~eV~~~~~~d~rig~~~l~PG~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN~~~~~~vv~~~~~~l~~  320 (473)
T PLN02353        241 GADVSQVSHAVGKDSRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMNDYQKSRFVNRVVSSMFN  320 (473)
T ss_pred             CCCHHHHHHHhCCCCcCCCCCCCCCCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999998777899999999999999999999998876


Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .++++||+|||+|||+||+|+|+||+++|++.|+++|++|.+|||++..++..+.++..+++|++|.+++++++.....+
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQV  400 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccce
Confidence            78999999999999999999999999999999999999999999999887665566666899999998888887777778


Q ss_pred             eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCCcCc
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWH  473 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~~~~  473 (480)
                      ++++++++++++||+||++|+|++|++++|+.+.+.|++|++|||+||+++++.+++.||+|+|+||+..+|-
T Consensus       401 ~~~~~~~~a~~~aD~vvi~t~~~ef~~l~~~~~~~~m~~~~~viD~rn~l~~~~~~~~G~~y~~~G~~~~~~~  473 (473)
T PLN02353        401 SVVWDAYEATKGAHGICILTEWDEFKTLDYQKIYDNMQKPAFVFDGRNVLDHEKLREIGFIVYSIGKPLDPWL  473 (473)
T ss_pred             eeeCCHHHHhcCCCEEEECCCChHhcccCHHHHHHhccCCCEEEECCCCCCHHHHHhCCcEEEEeCCCCCCCC
Confidence            9999999999999999999999999999999999999887789999999999999999999999999999993

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=2.4e-94  Score=708.03  Aligned_cols=412  Identities=42%  Similarity=0.701  Sum_probs=384.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||.||+|+..|.+|++.  ||+|+++|+++++++.|++|..|++||||++++.+ ...++++||+|++++++++|
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~--GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~ad   78 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAEL--GHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDAD   78 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCC
Confidence            8999999999999999999998  99999999999999999999999999999999985 55678999999999999999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      ++|||||||..++|     +.|+++++++++.|.++++..++||+.|||||||++.+.+.+.+...+.+|.|+++|||++
T Consensus        79 v~fIavgTP~~~dg-----~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLR  153 (414)
T COG1004          79 VVFIAVGTPPDEDG-----SADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLR  153 (414)
T ss_pred             EEEEEcCCCCCCCC-----CccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhc
Confidence            99999999998755     8999999999999999999889999999999999999988776655445899999999999


Q ss_pred             ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccC-CCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 011654          161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWV-PEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA  239 (480)
Q Consensus       161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~-~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~  239 (480)
                      +|+|++++++|+|||+|..    ++++.+.+++||..+. ...++..++..+||++||+.|+|++++|+|+||++.+|++
T Consensus       154 EG~Av~D~~~PdRIViG~~----~~~a~~~~~ely~~~~~~~~p~l~t~~~~AE~IKyaaNafLAtKIsFiNEia~ice~  229 (414)
T COG1004         154 EGSAVYDFLYPDRIVIGVR----SERAAAVLRELYAPFLRQDVPILFTDLREAELIKYAANAFLATKISFINEIANICEK  229 (414)
T ss_pred             CcchhhhccCCCeEEEccC----ChhHHHHHHHHHhhhhhcCCCEEEecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987    4567889999998752 2346888999999999999999999999999999999999


Q ss_pred             hCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 011654          240 TGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMF  319 (480)
Q Consensus       240 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~  319 (480)
                      .|+|.++|.+.++.|+|||.+|++||+||||+|||||+.+|+..|+++|++  ..+++++.++|+.|+.++++++.+.++
T Consensus       230 ~g~D~~~V~~gIGlD~RIG~~fl~aG~GyGGsCfPKD~~AL~~~a~~~~~~--~~ll~avv~vN~~qk~~~~~~i~~~~~  307 (414)
T COG1004         230 VGADVKQVAEGIGLDPRIGNHFLNAGFGYGGSCFPKDTKALIANAEELGYD--PNLLEAVVEVNERRKDKLAEKILNHLG  307 (414)
T ss_pred             hCCCHHHHHHHcCCCchhhHhhCCCCCCCCCcCCcHhHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999998  789999999999999999999999875


Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                        +++++|+||||+|||||||+|+||++.|++.|++.|++|.+|||.+.++....                      +++
T Consensus       308 --l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~----------------------~~~  363 (414)
T COG1004         308 --LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRN----------------------FPD  363 (414)
T ss_pred             --CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhc----------------------CCC
Confidence              99999999999999999999999999999999999999999999998765321                      236


Q ss_pred             eeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE  453 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~  453 (480)
                      +.+++++++++++||++|+.|.|++|+++||+.+  .|+.| +|||+||+++++
T Consensus       364 ~~~~~~~~~~~~~aDaivi~tew~ef~~~d~~~~--~m~~~-~v~DgRni~~~~  414 (414)
T COG1004         364 VELESDAEEALKGADAIVINTEWDEFRDLDFEKL--LMKTP-VVIDGRNIFDPD  414 (414)
T ss_pred             ceEeCCHHHHHhhCCEEEEeccHHHHhccChhhh--hccCC-EEEecccccCCC
Confidence            7899999999999999999999999999999998  89988 899999999863

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=100.00  E-value=4.2e-94  Score=702.36  Aligned_cols=418  Identities=33%  Similarity=0.463  Sum_probs=378.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|+||||||||+|+|..|+++  |++|+|+|+|+.+++.+|+|+.++.|+++++++++ +..|++++|+|+++ ++.||
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~--G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~d   86 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASA--GFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEE-LKECD   86 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHc--CCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhh-cccCC
Confidence            6899999999999999999999  99999999999999999999999999999997764 66788999999988 78999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHH-HHHhcCC---CCceeEeeCC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEK-ILTHNSR---EIKYQILSNP  156 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~-~l~~~~~---g~~~~v~~~P  156 (480)
                      +++||||||.+.     ...||+++++++.+.|+++|++|++||++||++||||+++.. ++++.++   +.||+++|||
T Consensus        87 v~iI~VPTPl~~-----~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysP  161 (436)
T COG0677          87 VFIICVPTPLKK-----YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSP  161 (436)
T ss_pred             EEEEEecCCcCC-----CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCc
Confidence            999999999876     458999999999999999999999999999999999999765 4554343   6799999999


Q ss_pred             ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 011654          157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSAL  236 (480)
Q Consensus       157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l  236 (480)
                      ||..||+..+++.+.++|+ ||.    ++++.+.+..||+.+.. ..+.++++.+|||+|+++|+||++|||++||++.+
T Consensus       162 ERv~PG~~~~el~~~~kVI-gG~----tp~~~e~a~~lY~~iv~-~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali  235 (436)
T COG0677         162 ERVLPGNVLKELVNNPKVI-GGV----TPKCAELAAALYKTIVE-GVIPVTSARTAEMVKLTENTFRDVNIALANELALI  235 (436)
T ss_pred             cccCCCchhhhhhcCCcee-ecC----CHHHHHHHHHHHHHheE-EEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            9999999999999999985 777    58999999999999986 47788999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHH
Q 011654          237 CEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVS  316 (480)
Q Consensus       237 ~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~  316 (480)
                      |+++|+|.++++++++++||  .+.++||||+||||+|.||+||+|.|+++|.+  ++++++|+++|++||.|++.++.+
T Consensus       236 ~~~~GIdvwevIeaAnt~P~--~~~~~PGpGvGGHCIpvDP~fl~~ka~~yg~~--~rlI~tAreIN~~mP~~Vv~~~~~  311 (436)
T COG0677         236 CNAMGIDVWEVIEAANTKPR--VNIFYPGPGVGGHCIPVDPYFLTWKAPEYGLP--ARLIRTAREINDSMPRHVVDRVKE  311 (436)
T ss_pred             HHHhCCcHHHHHHHhccCCc--eeecCCCCCCCCcccccCchheeecccccCCc--hHHHHHHHHHhccCCHHHHHHHHH
Confidence            99999999999999999998  58899999999999999999999999999998  899999999999999999999988


Q ss_pred             Hh---cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCC
Q 011654          317 SM---FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMS  393 (480)
Q Consensus       317 ~l---~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (480)
                      .|   ++.+++++|+|+|||||+|++|+||||+++|++.|.++|++|.+|||++..... +..+                
T Consensus       312 al~~~~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l~~~g~~v~~~DP~v~~~~~-~~~~----------------  374 (436)
T COG0677         312 ALNKAGKPLSGSKILVLGLAYKGDVDDLRESPALDIIELLEEWGGEVLVYDPYVKELPT-REDG----------------  374 (436)
T ss_pred             HHHHcCCCCcCceEEEEEeeecCCCcccccCchHHHHHHHHHhCCeEEEECCCCCcchh-hhhc----------------
Confidence            55   678899999999999999999999999999999999999999999999986431 1110                


Q ss_pred             CCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCcEEEEecC
Q 011654          394 PPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGK  467 (480)
Q Consensus       394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~  467 (480)
                          ..++ ..+.+++++++|+|||+|+|++|+.+||+.+.+.  . ++|||+||++++....     +.+||+
T Consensus       375 ----~~~~-~~~~e~al~~~D~vVi~tDH~~fk~id~~~i~~~--~-~vivDtrnV~~~~~~~-----~~~i~~  435 (436)
T COG0677         375 ----EGVT-LAILEEALKDADAVVIATDHSEFKEIDYEAIGKE--A-KVIVDTRNVWKREREA-----AKGIGR  435 (436)
T ss_pred             ----cccc-hhhHHHHhccCCEEEEEeccHHhhcCCHHHhccC--C-cEEEECccccchhhhh-----hhcccC
Confidence                1112 3688999999999999999999999999998765  3 4999999999987654     666665

>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=3.3e-93  Score=671.21  Aligned_cols=480  Identities=83%  Similarity=1.305  Sum_probs=461.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |+||+-||+||+|.|..+.++.++|..+|+++|++..++.+||+...|+||||+++.+.+....++.|++|.+.++.++|
T Consensus         1 ~~kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~ead   80 (481)
T KOG2666|consen    1 MVKICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEAD   80 (481)
T ss_pred             CceEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcc
Confidence            78999999999999999999999899999999999999999999999999999999999888889999999999999999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      +||++|.||...-|.|++..+|+++++++.+.|+++....+||+..||+|..+.+.+..+|.....|..|.++++|||+.
T Consensus        81 lvfisvntptkt~g~gkg~aadlky~es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~fqilsnpefla  160 (481)
T KOG2666|consen   81 LVFISVNTPTKTYGLGKGKAADLKYWESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKFQILSNPEFLA  160 (481)
T ss_pred             eEEEEecCCcccccCCCCcccchhHHHHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCceeEeccChHHhc
Confidence            99999999998888888999999999999999999999999999999999999999999997665578999999999999


Q ss_pred             ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHh
Q 011654          161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT  240 (480)
Q Consensus       161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~  240 (480)
                      +|.+++++++|+||+|||.++.....+.+.+..+|++..+...+++++.+++|+.||+.|+|++..|+.+|.|..+||+.
T Consensus       161 egtaikdl~npdrvligg~etpeg~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceat  240 (481)
T KOG2666|consen  161 EGTAIKDLFNPDRVLIGGRETPEGFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEAT  240 (481)
T ss_pred             ccchhhhhcCCceEEECCCCChhHHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc
Confidence            99999999999999999998766778888999999999887789999999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHHhcC
Q 011654          241 GADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMFN  320 (480)
Q Consensus       241 Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~  320 (480)
                      |+|+.+|..+.++|+|||++|++.+.||||+||.||+..|+++++.+|+|+++.+|+++..+|+||..+.++++..+|+.
T Consensus       241 gadv~eva~avg~d~rig~kfl~asvgfggscfqkdilnlvyice~lnlpeva~ywqqvi~~ndyqkrrfa~rii~smFN  320 (481)
T KOG2666|consen  241 GADVSEVAYAVGTDSRIGSKFLNASVGFGGSCFQKDILNLVYICECLNLPEVAEYWQQVIKINDYQKRRFANRIISSMFN  320 (481)
T ss_pred             CCCHHHHHHHhcccccccHHHhhcccCcCchhHHHHHHHHHHHHhcCCChHHHHHHHHHhhhhHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCC-CCc
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPA-SKQ  399 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  399 (480)
                      .+.++||+|||++||.+|+|+|+||++.+.+.|++.++...+|||.+.++++.+++..-.++||||.|++++++.. ...
T Consensus       321 TVsdKKIAIlGFAFKKdTgdtREt~AI~Vck~Lled~A~LsIYDPqV~~eQI~~DLs~~~~dwdhp~~l~~~s~~~V~k~  400 (481)
T KOG2666|consen  321 TVSDKKIAILGFAFKKDTGDTRETPAIDVCKGLLEDKARLSIYDPQVTEEQIQRDLSMPKFDWDHPLHLQPMSPTTVSKQ  400 (481)
T ss_pred             ccccceEEEEEeEeecCCCCcccCcHHHHHHHHhhccceeeecCCCCCHHHHHHhcccccccccCcccccccChhhhhhe
Confidence            9999999999999999999999999999999999999999999999999999999998889999999999999995 488


Q ss_pred             eeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCCcCccccccC
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHKDTLAV  479 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~~~~~~~~~~  479 (480)
                      +++..++|+|.++|+++||+|+|+||++||+++|.+.|.+|+.|||+||++|.+++++.||+.+.||.+..+|+++.-++
T Consensus       401 VtV~sD~Y~A~k~AHai~ilTEWDeFk~Ldy~rI~~~MqkPAfiFDGR~ilD~~kLreIGF~v~sIGk~~dq~~~~~~a~  480 (481)
T KOG2666|consen  401 VTVTSDAYEATKDAHAICILTEWDEFKELDYQRIFDNMQKPAFIFDGRNILDHEKLREIGFIVYSIGKPLDQWLKDMPAV  480 (481)
T ss_pred             eeeecchhhhhcccceEEEEechHhhhccCHHHHHHhccCCeEEecchhhccHHHHhhcceEEEEcCCChHHhhcccccC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999987665


Q ss_pred             C
Q 011654          480 A  480 (480)
Q Consensus       480 ~  480 (480)
                      +
T Consensus       481 g  481 (481)
T KOG2666|consen  481 G  481 (481)
T ss_pred             C
Confidence            3

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=100.00  E-value=6.1e-82  Score=652.57  Aligned_cols=406  Identities=25%  Similarity=0.328  Sum_probs=358.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+||||++||.+|++   ||+|++||+++++++.+++|..|+.|++++++...   +++.++++.+ ++++||+
T Consensus         7 mkI~vIGlGyvGlpmA~~la~---~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~---g~l~~t~~~~-~~~~adv   79 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFGK---SRQVVGFDVNKKRILELKNGVDVNLETTEEELREA---RYLKFTSEIE-KIKECNF   79 (425)
T ss_pred             CeEEEECcCcchHHHHHHHhc---CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhh---CCeeEEeCHH-HHcCCCE
Confidence            899999999999999999886   69999999999999999999999999999999653   6788888876 5899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcCC---CCceeEeeCCc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNSR---EIKYQILSNPE  157 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~~---g~~~~v~~~Pe  157 (480)
                      +|+|||||.+.++     .+|++++.++.++|.++++++++||++||++|||+++ +.+.+++..+   +.+|.++|+||
T Consensus        80 vii~Vptp~~~~~-----~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE  154 (425)
T PRK15182         80 YIITVPTPINTYK-----QPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPE  154 (425)
T ss_pred             EEEEcCCCCCCCC-----CcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCC
Confidence            9999999986643     7999999999999999999999999999999999997 4566665322   46799999999


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      |+.+|.+..++.+++++|+|+.     +++.+.++++|+.+.....++.+++++||++|+++|+|++++|+++||++.+|
T Consensus       155 ~v~~G~a~~~~~~~~riv~G~~-----~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~la  229 (425)
T PRK15182        155 RINPGDKKHRLTNIKKITSGST-----AQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIF  229 (425)
T ss_pred             cCCCCcccccccCCCeEEECCC-----HHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987653     77889999999998633467889999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011654          238 EATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSS  317 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~  317 (480)
                      +++|+|+++|++++++++++  ..+.||+ |||||||||+++|.+.++++|++  ++++++++++|+.||+++++++++.
T Consensus       230 e~~GiD~~~v~~a~~~~~~~--~~~~pG~-vGG~ClpkD~~~L~~~a~~~g~~--~~l~~~a~~iN~~~~~~v~~~~~~~  304 (425)
T PRK15182        230 NRLNIDTEAVLRAAGSKWNF--LPFRPGL-VGGHCIGVDPYYLTHKSQGIGYY--PEIILAGRRLNDNMGNYVSEQLIKA  304 (425)
T ss_pred             HHhCcCHHHHHHHhcCCCCc--ccCCCCc-cccccccccHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999753  2346666 99999999999999999999998  7899999999999999999999988


Q ss_pred             h---cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCC
Q 011654          318 M---FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSP  394 (480)
Q Consensus       318 l---~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (480)
                      +   ++++++++|+|||+|||+||+|+||||+++|++.|+++|++|.+|||++..+...+.++                 
T Consensus       305 l~~~~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~-----------------  367 (425)
T PRK15182        305 MIKKGINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYG-----------------  367 (425)
T ss_pred             HHhcCCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcC-----------------
Confidence            7   35688999999999999999999999999999999999999999999987654433221                 


Q ss_pred             CCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH
Q 011654          395 PASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE  453 (480)
Q Consensus       395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~  453 (480)
                           +...  .+.++++||+|||+|+|++|+++||+++.+.|+.+++|||+||+++.+
T Consensus       368 -----~~~~--~~~~~~~ad~vvi~t~h~~f~~~~~~~~~~~~~~~~~iiD~r~~~~~~  419 (425)
T PRK15182        368 -----IIPV--SEVKSSHYDAIIVAVGHQQFKQMGSEDIRGFGKDKHVLYDLKYVLPAE  419 (425)
T ss_pred             -----cccc--hhhhhcCCCEEEEccCCHHhhcCCHHHHHHhcCCCCEEEECCCCCChh
Confidence                 1100  123578999999999999999999999999887655999999999854

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=100.00  E-value=2.4e-79  Score=635.68  Aligned_cols=406  Identities=39%  Similarity=0.614  Sum_probs=371.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|+||+++|..|+++  ||+|++||+++++++.+++|..|++|+++++++.+ ...+++++++++.+++++||
T Consensus         1 mkI~vIGlG~~G~~lA~~La~~--G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~ad   78 (411)
T TIGR03026         1 MKIAVIGLGYVGLPLAALLADL--GHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDAD   78 (411)
T ss_pred             CEEEEECCCchhHHHHHHHHhc--CCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCC
Confidence            7999999999999999999998  99999999999999999999999999999998864 23466899999998899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHH-HHHHhcC--C-CCceeEeeCC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIE-KILTHNS--R-EIKYQILSNP  156 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~-~~l~~~~--~-g~~~~v~~~P  156 (480)
                      +||+|||||.+.++     .+|++++.++++++.++++++++|+++||++|||++++. +++++..  . +.+|.++++|
T Consensus        79 vvii~vpt~~~~~~-----~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~P  153 (411)
T TIGR03026        79 VIIICVPTPLKEDG-----SPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNP  153 (411)
T ss_pred             EEEEEeCCCCCCCC-----CcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECC
Confidence            99999999986543     899999999999999999999999999999999999885 5555532  1 4678999999


Q ss_pred             ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 011654          157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSAL  236 (480)
Q Consensus       157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l  236 (480)
                      |++.+|.+..++.+|+++++|++     +++.++++++|+.++.+.+++.+++++||++|+++|++++++++++||++.+
T Consensus       154 e~~~~G~~~~~~~~~~~iv~G~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~l  228 (411)
T TIGR03026       154 EFLREGNAVHDLLNPDRIVGGET-----EEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARI  228 (411)
T ss_pred             CcCCCCChhhhhcCCCEEEEeCC-----HHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998854     8899999999999862246788999999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHH
Q 011654          237 CEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVS  316 (480)
Q Consensus       237 ~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~  316 (480)
                      |+++|+|+++++++++++|+++.+++.||+||||+|++||++++++.|++.|++  .+++++++++|++||.++++++++
T Consensus       229 a~~~GiD~~~v~~~~~~~~~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~--~~l~~~~~~~N~~~~~~~~~~~~~  306 (411)
T TIGR03026       229 CEALGIDVYEVIEAAGTDPRIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYN--PELIEAAREINDSQPDYVVEKILD  306 (411)
T ss_pred             HHHhCCCHHHHHHHhCCCCCCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCC--cHHHHHHHHHHHHhHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998  889999999999999999999999


Q ss_pred             HhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCC
Q 011654          317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPA  396 (480)
Q Consensus       317 ~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (480)
                      .| +.+++++|+|||+|||+||+|+|+||++.|++.|+++|++|.+|||++..+.... +                    
T Consensus       307 ~l-~~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~-~--------------------  364 (411)
T TIGR03026       307 LL-GPLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKG-L--------------------  364 (411)
T ss_pred             Hh-hcccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhh-c--------------------
Confidence            88 5789999999999999999999999999999999999999999999998764321 1                    


Q ss_pred             CCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC
Q 011654          397 SKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN  448 (480)
Q Consensus       397 ~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~  448 (480)
                          ..++++++++++||+||++|+|++|+++||+.+.+.|+.| +|||+||
T Consensus       365 ----~~~~~~~~~~~~ad~~v~~t~~~~~~~~~~~~~~~~~~~~-~v~D~~~  411 (411)
T TIGR03026       365 ----PLIDDLEEALKGADALVILTDHDEFKDLDLEKIKDLMKGK-VVVDTRN  411 (411)
T ss_pred             ----ccCCCHHHHHhCCCEEEEecCCHHHhccCHHHHHHhcCCC-EEEeCCC
Confidence                1246889999999999999999999999999999999887 9999997

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=100.00  E-value=9.7e-78  Score=621.63  Aligned_cols=394  Identities=27%  Similarity=0.412  Sum_probs=348.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~a   79 (480)
                      ||||+|||+|+||++||.+|+++  ||+|++||+++++++.+++|..+++|+++++++.+ ...++++++++.    ++|
T Consensus         3 ~~kI~VIGlG~~G~~~A~~La~~--G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~----~~a   76 (415)
T PRK11064          3 FETISVIGLGYIGLPTAAAFASR--QKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTP----EPA   76 (415)
T ss_pred             ccEEEEECcchhhHHHHHHHHhC--CCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeeccc----ccC
Confidence            58999999999999999999998  99999999999999999999999999999999764 345778887753    579


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCC----------CCc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR----------EIK  149 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~----------g~~  149 (480)
                      |+||+|||||.+.++     .+|++++.++++++.++++++++||++||++|||++++...+.+.+.          +.+
T Consensus        77 Dvvii~vptp~~~~~-----~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~  151 (415)
T PRK11064         77 DAFLIAVPTPFKGDH-----EPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQAD  151 (415)
T ss_pred             CEEEEEcCCCCCCCC-----CcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCC
Confidence            999999999986643     89999999999999999999999999999999999999876665321          357


Q ss_pred             eeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHH
Q 011654          150 YQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISS  229 (480)
Q Consensus       150 ~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~  229 (480)
                      |.++++|||+.+|.+..++.++++++ ||.    ++++.++++++|+.+.+ ..++++++++||++|+++|+|+++++++
T Consensus       152 f~v~~~PE~~~~G~~~~~~~~~~~vv-gG~----~~~~~~~~~~ly~~~~~-~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~  225 (415)
T PRK11064        152 INIAYCPERVLPGQVMVELIKNDRVI-GGM----TPVCSARASELYKIFLE-GECVVTNSRTAEMCKLTENSFRDVNIAF  225 (415)
T ss_pred             eEEEECCCccCCCChhhhhcCCCEEE-EeC----CHHHHHHHHHHHHHhcC-CCeeeCCHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999999999875 775    38899999999999974 4567789999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHH
Q 011654          230 VNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNR  309 (480)
Q Consensus       230 ~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~  309 (480)
                      +||++.+|+++|+|+++|+++++++||+  ++++||+||||||||||+++|.+   +.+..  ++++++++++|++||++
T Consensus       226 ~nE~~~lae~~GiD~~~v~~~~~~~~ri--~~l~pG~G~GG~ClpkD~~~L~~---~~~~~--~~l~~~a~~~N~~~~~~  298 (415)
T PRK11064        226 ANELSLICADQGINVWELIRLANRHPRV--NILQPGPGVGGHCIAVDPWFIVA---QNPQQ--ARLIRTAREVNDGKPHW  298 (415)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHhccCCCc--ccCCCCCCCCCccccccHHHHHH---hcCCc--cHHHHHHHHHHHHhHHH
Confidence            9999999999999999999999999987  68999999999999999999965   34444  68999999999999999


Q ss_pred             HHHHHHHHh-------cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEECCCCChHHHHHhhhcccc
Q 011654          310 FVNRIVSSM-------FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDK-AKLSIYDPQVTEDQIQRDLSMKKF  381 (480)
Q Consensus       310 ~~~~~~~~l-------~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~~~~~~~~~~~~  381 (480)
                      +++++++.+       ++.+++++|+|||+|||+||+|+||||+++|++.|+++| ++|.+|||++.......       
T Consensus       299 v~~~~~~~l~~~l~~~~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~-------  371 (415)
T PRK11064        299 VIDQVKAAVADCLAATDKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKL-------  371 (415)
T ss_pred             HHHHHHHHHhhhhhhhccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhc-------
Confidence            999999876       456789999999999999999999999999999999996 99999999986532110       


Q ss_pred             CCCCCCCCCCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEc
Q 011654          382 DWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDG  446 (480)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~  446 (480)
                                     ...+. ..++++++++||+||++|+|++|+++||+++    +.| +|||+
T Consensus       372 ---------------~~~~~-~~~~~~~~~~ad~vvi~t~~~~~~~~~~~~~----~~~-~v~D~  415 (415)
T PRK11064        372 ---------------DGLVT-LVSLDEALATADVLVMLVDHSQFKAINGDNV----HQQ-WVVDT  415 (415)
T ss_pred             ---------------cCcee-eCCHHHHHhCCCEEEECCCCHHhccCCHHHh----CCC-EEEeC
Confidence                           01122 3789999999999999999999999999875    345 89995

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=100.00  E-value=5.6e-78  Score=616.13  Aligned_cols=374  Identities=25%  Similarity=0.371  Sum_probs=331.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+||||+++|..|+ .  ||+|++||+++++++.++++..+++|+++++++.+. .++++++++..+++++||+
T Consensus         1 mkI~VIGlGyvGl~~A~~lA-~--G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~-~~~l~~t~~~~~~~~~ad~   76 (388)
T PRK15057          1 MKITISGTGYVGLSNGLLIA-Q--NHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSD-KIHFNATLDKNEAYRDADY   76 (388)
T ss_pred             CEEEEECCCHHHHHHHHHHH-h--CCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhC-CCcEEEecchhhhhcCCCE
Confidence            79999999999999998887 4  899999999999999999999999999999987642 3567778888888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAE  161 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~  161 (480)
                      ||+|||||.+.+    ...+|++++++++++|.+ ++++++||++||++|||++++.+.+.+      +.++++|||+.+
T Consensus        77 vii~Vpt~~~~k----~~~~dl~~v~~v~~~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~------~~v~~~PE~l~~  145 (388)
T PRK15057         77 VIIATPTDYDPK----TNYFNTSSVESVIKDVVE-INPYAVMVIKSTVPVGFTAAMHKKYRT------ENIIFSPEFLRE  145 (388)
T ss_pred             EEEeCCCCCccC----CCCcChHHHHHHHHHHHh-cCCCCEEEEeeecCCchHHHHHHHhhc------CcEEECcccccC
Confidence            999999997541    247899999999999988 688999999999999999999877654      357899999999


Q ss_pred             cccccccCCCCeEEEEeCCCcchHHHHHHHHHHH-hccCCCC-eEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 011654          162 GTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVY-AHWVPED-RIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA  239 (480)
Q Consensus       162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~-~~~~~~~-~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~  239 (480)
                      |++++++++|++||+|+.     ++..+++.++| ..+.... +++++++++||++|+++|+|++++|+|+||++.+|++
T Consensus       146 G~a~~d~~~p~rvv~G~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~  220 (388)
T PRK15057        146 GKALYDNLHPSRIVIGER-----SERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAES  220 (388)
T ss_pred             CcccccccCCCEEEEEcC-----cHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999986     34566666666 4443222 2357999999999999999999999999999999999


Q ss_pred             hCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 011654          240 TGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMF  319 (480)
Q Consensus       240 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~  319 (480)
                      +|+|+++|++++++|||+|..|++||+||||||||||+++|.+.+  .+++  ++++++++++|+.||.++++++++.  
T Consensus       221 ~GiD~~eV~~a~~~d~ri~~~~l~pG~G~GG~ClpkD~~~L~~~~--~~~~--~~l~~~~~~~N~~~~~~~~~~~~~~--  294 (388)
T PRK15057        221 LGLNTRQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANY--QSVP--NNLISAIVDANRTRKDFIADAILSR--  294 (388)
T ss_pred             hCcCHHHHHHHhcCCCCCCCccCCCCCCCCCcChhhhHHHHHHhc--cCCC--cHHHHHHHHHHHHhHHHHHHHHHHh--
Confidence            999999999999999999999999999999999999999998766  4455  6899999999999999999999873  


Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                         ++++|+|||+|||+||+|+|+||+++|++.|+++|++|.+|||++.+...                         .+
T Consensus       295 ---~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~~-------------------------~~  346 (388)
T PRK15057        295 ---KPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDSF-------------------------FN  346 (388)
T ss_pred             ---cCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchhh-------------------------cC
Confidence               67899999999999999999999999999999999999999999865431                         14


Q ss_pred             eeeecCHHHhcccccEEEEEeccccccccc
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDEFKTLD  429 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~  429 (480)
                      +.+++++++++++||++++.|.|+||+++.
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  376 (388)
T PRK15057        347 SRLERDLATFKQQADVIISNRMAEELKDVA  376 (388)
T ss_pred             CeeeCCHHHHHHhCCEEEEcCCcHHHHhhh
Confidence            788999999999999999999999998744

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=100.00  E-value=1.8e-37  Score=286.42  Aligned_cols=182  Identities=41%  Similarity=0.628  Sum_probs=149.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+||+|+++|..||++  ||+|+++|+|+++++.|++|..|++||++++++.+ ...++++++++.++++.++|
T Consensus         1 M~I~ViGlGyvGl~~A~~lA~~--G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~ad   78 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALAEK--GHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDAD   78 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHHHT--TSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-S
T ss_pred             CEEEEECCCcchHHHHHHHHhC--CCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccc
Confidence            8999999999999999999999  99999999999999999999999999999999986 44789999999999999999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcCC-CCceeEeeCCcc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNSR-EIKYQILSNPEF  158 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~~-g~~~~v~~~Pe~  158 (480)
                      ++|||||||.+.++     ++|++++++++++|+++++++++||++||++|||+++ +.+++++.+. +.+|+++|+|||
T Consensus        79 v~~I~VpTP~~~~~-----~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PEr  153 (185)
T PF03721_consen   79 VVFICVPTPSDEDG-----SPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPER  153 (185)
T ss_dssp             EEEE----EBETTT-----SBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE----
T ss_pred             eEEEecCCCccccC-----CccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCc
Confidence            99999999998744     8999999999999999999999999999999999995 6788887764 478999999999


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDV  194 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l  194 (480)
                      +.||++++++.+|++|++|+.    ++.+.+.+++|
T Consensus       154 l~~G~a~~d~~~~~rvV~G~~----~~~~~~~~~~l  185 (185)
T PF03721_consen  154 LREGRAIEDFRNPPRVVGGCD----DESAEERLKEL  185 (185)
T ss_dssp             --TTSHHHHHHSSSEEEEEES----SHHHHHHHHHH
T ss_pred             cCCCCcchhccCCCEEEEeCC----cHHHHHHHhcC
Confidence            999999999999999998876    35555566664

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=100.00  E-value=7e-32  Score=261.50  Aligned_cols=249  Identities=21%  Similarity=0.222  Sum_probs=209.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR-IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|.||.|||.+|.++  ||+|++||+++++ .+.+...                   +.+...++.++++.+|
T Consensus         1 ~kIafIGLG~MG~pmA~~L~~a--G~~v~v~~r~~~ka~~~~~~~-------------------Ga~~a~s~~eaa~~aD   59 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANLLKA--GHEVTVYNRTPEKAAELLAAA-------------------GATVAASPAEAAAEAD   59 (286)
T ss_pred             CeEEEEcCchhhHHHHHHHHHC--CCEEEEEeCChhhhhHHHHHc-------------------CCcccCCHHHHHHhCC
Confidence            6999999999999999999999  9999999999998 5555441                   2456678888899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      +||+|||.+              ..+++++   +.+.+.+++++++|++||++|.+++++.+.+++.+    +..+.+|.
T Consensus        60 vVitmv~~~--------------~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G----~~~lDAPV  121 (286)
T COG2084          60 VVITMLPDD--------------AAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKG----LEFLDAPV  121 (286)
T ss_pred             EEEEecCCH--------------HHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC----CcEEecCc
Confidence            999999864              3456666   57889999999999999999999999999998875    35678998


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      ..++..+....+   .||+||+     ++.+++++++|+.+++ ..+++++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus       122 sGg~~~A~~GtL---timvGG~-----~~~f~r~~pvl~~~g~-~i~~~G~~G~G~~~Kl~nn~l~~~~~~a~aEAl~la  192 (286)
T COG2084         122 SGGVPGAAAGTL---TIMVGGD-----AEAFERAKPVLEAMGK-NIVHVGPVGAGQAAKLANNILLAGNIAALAEALALA  192 (286)
T ss_pred             cCCchhhhhCce---EEEeCCC-----HHHHHHHHHHHHHhcC-ceEEECCCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888766665554   5899996     8999999999999974 466778889999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHH
Q 011654          238 EATGADVTQVSHAIGKDTRIGP-------RFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI  300 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~  300 (480)
                      ++.|+|++.+.++++..+.-+|       +++  ++.|||....+.||+.+..+.+++.|++  .++...+.
T Consensus       193 ~k~Gld~~~~~~vi~~~~~~s~~~e~~~~~m~~~~~~p~F~v~~~~KDl~la~~~A~~~g~~--lP~~~~~~  262 (286)
T COG2084         193 EKAGLDPDVVLEVISGGAAGSWILENYGPRMLEGDFSPGFAVDLMLKDLGLALDAAKELGAP--LPLTALAA  262 (286)
T ss_pred             HHcCCCHHHHHHHHhccccCChHHHhhcchhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCC--CcHHHHHH
Confidence            9999999999999987642111       122  3667799999999999999999999998  55555443

>PLN02858 fructose-bisphosphate aldolase

Probab=100.00  E-value=2.7e-30  Score=298.42  Aligned_cols=382  Identities=10%  Similarity=0.034  Sum_probs=285.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .||||||+|.||.+||.+|+++  ||+|++||+++++++.+.+.                   +.+.++++.+++++||+
T Consensus         5 ~~IGfIGLG~MG~~mA~~L~~~--G~~v~v~dr~~~~~~~l~~~-------------------Ga~~~~s~~e~a~~adv   63 (1378)
T PLN02858          5 GVVGFVGLDSLSFELASSLLRS--GFKVQAFEISTPLMEKFCEL-------------------GGHRCDSPAEAAKDAAA   63 (1378)
T ss_pred             CeEEEEchhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence            5899999999999999999998  99999999999999988752                   23566789998999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      ||+|||++              ..+++++   +++.+.+++++++|++||+.|.+++++.+.+.+.+.  .+.++.+|..
T Consensus        64 Vi~~l~~~--------------~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g~--~~~~lDaPVs  127 (1378)
T PLN02858         64 LVVVLSHP--------------DQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERKE--QIFLVDAYVS  127 (1378)
T ss_pred             EEEEcCCh--------------HHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcCC--ceEEEEccCc
Confidence            99999865              2345665   578888889999999999999999999988887641  2456788988


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEe-CChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIIT-TNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      .++..+....+   .+++||+     ++.+++++++|+.++. ..+++ ++.+.+..+|+++|.+.+.+++.+.|...++
T Consensus       128 Gg~~~A~~G~L---~imvGG~-----~~~~~~~~p~l~~~g~-~i~~~~G~~G~g~~~KL~nN~l~~~~~~a~aEAl~la  198 (1378)
T PLN02858        128 KGMSDLLNGKL---MIIASGR-----SDAITRAQPFLSAMCQ-KLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALG  198 (1378)
T ss_pred             CCHHHHhcCCe---EEEEcCC-----HHHHHHHHHHHHHhcC-ceEEecCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77655544433   4788986     7899999999999974 33444 7899999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHH-----H
Q 011654          238 EATGADVTQVSHAIGKDTRIGP-------RFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKV-----N  303 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~-----N  303 (480)
                      ++.|+|++.++++++..+.-++       .++  .+.+||....+.||+.+.+++|++.|++  .++...+.+.     +
T Consensus       199 ~~~Gld~~~l~~vl~~s~g~s~~~~~~~~~~~~~d~~~~F~l~l~~KDl~la~~~A~~~g~~--lpl~~~a~~~~~~a~~  276 (1378)
T PLN02858        199 VRAGIHPWIIYDIISNAAGSSWIFKNHVPLLLKDDYIEGRFLNVLVQNLGIVLDMAKSLPFP--LPLLAVAHQQLISGSS  276 (1378)
T ss_pred             HHcCCCHHHHHHHHhcCCccCHHHHhhhhHhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHHHHHHh
Confidence            9999999999999987642111       122  3456788899999999999999999998  5555544431     1


Q ss_pred             H-----HhHHHHHHHHHHHhc-----------------------CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHh
Q 011654          304 D-----YQKNRFVNRIVSSMF-----------------------NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLG  355 (480)
Q Consensus       304 ~-----~~~~~~~~~~~~~l~-----------------------~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~  355 (480)
                      .     ... .+++.+.+..+                       ++-..++|+++|+..          ....+++.|.+
T Consensus       277 ~G~g~~D~s-av~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IGfIGlG~----------MG~~mA~~L~~  345 (1378)
T PLN02858        277 SMQGDDTAT-SLAKVWEKVFGVNILEAANRELYKPEDLAKQITMQAKPVKRIGFIGLGA----------MGFGMASHLLK  345 (1378)
T ss_pred             cCCCccChH-HHHHHHHHHcCCCccccccccccChHHHHHHhhccccCCCeEEEECchH----------HHHHHHHHHHH
Confidence            1     111 12222211100                       011237899999976          88999999999


Q ss_pred             CCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecCHHHhcccccEEEEEecccc-cccc--cHHH
Q 011654          356 DKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDE-FKTL--DYQK  432 (480)
Q Consensus       356 ~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~-~~~~--~~~~  432 (480)
                      .|++|.+||+.....+....                      .+....+++.++++++|+|++++..++ .+++  ....
T Consensus       346 ~G~~V~v~dr~~~~~~~l~~----------------------~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g  403 (1378)
T PLN02858        346 SNFSVCGYDVYKPTLVRFEN----------------------AGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG  403 (1378)
T ss_pred             CCCEEEEEeCCHHHHHHHHH----------------------cCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence            99999999986543322221                      122346788999999999999999755 2322  1233


Q ss_pred             HHHhcCCCCEEEEcCCCCChHH------Hhh--cCcEEEE
Q 011654          433 IFDNMRKPAYIFDGRNILDVEK------LRE--IGFIVYS  464 (480)
Q Consensus       433 ~~~~~~~~~~i~D~~~~~~~~~------~~~--~g~~y~~  464 (480)
                      +...+++..+|||+..+-+...      +++  .|+.|.-
T Consensus       404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g~g~~~lD  443 (1378)
T PLN02858        404 AVSALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVD  443 (1378)
T ss_pred             HHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence            4556666679999988775321      233  5777754

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.97  E-value=1.1e-28  Score=245.28  Aligned_cols=250  Identities=15%  Similarity=0.147  Sum_probs=199.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |+||+|||+|.||.+||..|+++  ||+|++||+++++++.+.+.                   +...++++.+++++||
T Consensus         1 m~~Ig~IGlG~mG~~mA~~l~~~--G~~V~v~d~~~~~~~~~~~~-------------------g~~~~~s~~~~~~~aD   59 (296)
T PRK15461          1 MAAIAFIGLGQMGSPMASNLLKQ--GHQLQVFDVNPQAVDALVDK-------------------GATPAASPAQAAAGAE   59 (296)
T ss_pred             CCeEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHc-------------------CCcccCCHHHHHhcCC
Confidence            67999999999999999999998  99999999999999887753                   2334567888889999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      +||+|||++.              .++.++   +.+.+.+++++++|++||++|.+++++.+.+.+.+    +.++.+|.
T Consensus        60 vVi~~vp~~~--------------~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g----~~~ldapV  121 (296)
T PRK15461         60 FVITMLPNGD--------------LVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKG----FSMMDVPV  121 (296)
T ss_pred             EEEEecCCHH--------------HHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CcEEEccC
Confidence            9999998642              234443   45677788999999999999999999988887764    34568887


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      ...+..+.....   .+++||+     ++.+++++++|+.+++ ..++.++++.|..+|+++|.+...++++++|...+|
T Consensus       122 ~g~~~~a~~g~l---~~~~gg~-----~~~~~~~~p~l~~~g~-~~~~~g~~G~g~~~Kl~~N~~~~~~~~~~~Ea~~l~  192 (296)
T PRK15461        122 GRTSDNAITGTL---LLLAGGT-----AEQVERATPILMAMGN-ELINAGGPGMGIRVKLINNYMSIALNALSAEAAVLC  192 (296)
T ss_pred             CCCHHHHHhCcE---EEEECCC-----HHHHHHHHHHHHHHcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666544433322   4678886     7899999999999974 466778999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCCC-------C-ccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHH
Q 011654          238 EATGADVTQVSHAIGKDTRIG-------P-RFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI  300 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~~-------~-~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~  300 (480)
                      ++.|+|++.++++++..+.-+       . .++  .+.++|....+.||+.+..+++++.|++  .++.+.+.
T Consensus       193 ~~~Gld~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KD~~l~~~~a~~~g~~--~p~~~~~~  263 (296)
T PRK15461        193 EALGLSFDVALKVMSGTAAGKGHFTTTWPNKVLKGDLSPAFMIDLAHKDLGIALDVANQLHVP--MPLGAASR  263 (296)
T ss_pred             HHcCCCHHHHHHHHhcCcccChHHHccccchhccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHHH
Confidence            999999999999997543100       1 121  2345688889999999999999999998  55554433

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.96  E-value=3.3e-28  Score=242.34  Aligned_cols=251  Identities=18%  Similarity=0.229  Sum_probs=201.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +|||+|||+|.||.++|..|++.  |++|++||+++++.+.+.+.                   +...++++++++++||
T Consensus         2 ~~~IgviG~G~mG~~~a~~l~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~d   60 (296)
T PRK11559          2 TMKVGFIGLGIMGKPMSKNLLKA--GYSLVVYDRNPEAVAEVIAA-------------------GAETASTAKAVAEQCD   60 (296)
T ss_pred             CceEEEEccCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCC
Confidence            57999999999999999999998  99999999999988877642                   2345677888889999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      +||+|+|++.              .++.++   +++.+.++++++|++.||+.|.+++++.+.+++.+    +.++++|.
T Consensus        61 ~vi~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g----~~~~d~pv  122 (296)
T PRK11559         61 VIITMLPNSP--------------HVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKG----IEMLDAPV  122 (296)
T ss_pred             EEEEeCCCHH--------------HHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcC----CcEEEcCC
Confidence            9999998642              234444   45777888999999999999999999988887653    34678998


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      +..+..+..+..   .+++|++     +++++.++++++.++. ..+++++.+.|+.+|+++|.+.+.++++++|+..+|
T Consensus       123 ~g~~~~a~~g~l---~i~~gg~-----~~~~~~~~~~l~~~~~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~  193 (296)
T PRK11559        123 SGGEPKAIDGTL---SVMVGGD-----KAIFDKYYDLMKAMAG-SVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLA  193 (296)
T ss_pred             CCCHHHHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877665544322   4778875     7889999999999863 456677889999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCC-------CCccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHH
Q 011654          238 EATGADVTQVSHAIGKDTRI-------GPRFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK  301 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~-------~~~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~  301 (480)
                      ++.|+|++++++++......       ..+++  ...+||...++.||+.++.+++++.|++  .++++.+.+
T Consensus       194 ~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~~~~~~d~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~  264 (296)
T PRK11559        194 TKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAP--LPLTAAVME  264 (296)
T ss_pred             HHcCCCHHHHHHHHhcCcccCHHHHhhchHhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence            99999999999999754310       01111  2346789999999999999999999998  566555443

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.96  E-value=2.9e-28  Score=242.11  Aligned_cols=248  Identities=19%  Similarity=0.223  Sum_probs=196.9

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEE
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIV   82 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvV   82 (480)
                      ||+|||+|.||.+||..|+++  |++|++||+++++++.+.+.                   +...++++.+++++||+|
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~~aDiv   59 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKA--GYQLHVTTIGPEVADELLAA-------------------GAVTAETARQVTEQADVI   59 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCcccCCHHHHHhcCCEE
Confidence            699999999999999999998  99999999999998887652                   122345677888999999


Q ss_pred             EEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           83 FVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      |+|||++.              .++.++   +.+.+.++++++|++.||+.|.+++++.+.+++.+    +.++.+|.+.
T Consensus        60 i~~vp~~~--------------~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g----~~~~~~pv~g  121 (291)
T TIGR01505        60 FTMVPDSP--------------QVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKG----IDYLDAPVSG  121 (291)
T ss_pred             EEecCCHH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CCEEecCCCC
Confidence            99998642              233443   44667788899999999999999999988887653    3456789877


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA  239 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~  239 (480)
                      .+..+.....   .+++|++     ++++++++++++.++. ..++.++.+.++.+|+++|.+.+.++++++|+..+|++
T Consensus       122 ~~~~a~~g~l---~i~~gg~-----~~~~~~~~~ll~~lg~-~~~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~  192 (291)
T TIGR01505       122 GEIGAIEGTL---SIMVGGD-----QAVFDRVKPLFEALGK-NIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASK  192 (291)
T ss_pred             CHHHHhcCCE---EEEecCC-----HHHHHHHHHHHHHhcC-CeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6655543322   4778875     7899999999999873 45566677999999999999999999999999999999


Q ss_pred             hCCCHHHHHHHhcCCCCCC-------Cccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHH
Q 011654          240 TGADVTQVSHAIGKDTRIG-------PRFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI  300 (480)
Q Consensus       240 ~Gid~~~v~~~~~~~~~~~-------~~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~  300 (480)
                      .|+|++++.++++.....+       .++.  ...+||+..|+.||+.++.+++++.|++  .++++++.
T Consensus       193 ~Gid~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~~~~~~~~  260 (291)
T TIGR01505       193 AGVDPVRVRQALRGGLAGSTVLEVKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAVGAN--LPNTATVQ  260 (291)
T ss_pred             cCCCHHHHHHHHhcCcccCHHHHhhChhhhcCCCCCCcchHHHHHHHHHHHHHHHHcCCC--ChhHHHHH
Confidence            9999999999998543111       1111  2236799999999999999999999998  56665443

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=99.96  E-value=3.1e-28  Score=231.41  Aligned_cols=241  Identities=17%  Similarity=0.224  Sum_probs=198.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++||+||+|.||.+|+.+|.++  ||.|++|||+.++++.+.+.                   +.++.++|.|+++.||+
T Consensus        36 ~~iGFIGLG~MG~~M~~nLik~--G~kVtV~dr~~~k~~~f~~~-------------------Ga~v~~sPaeVae~sDv   94 (327)
T KOG0409|consen   36 TRIGFIGLGNMGSAMVSNLIKA--GYKVTVYDRTKDKCKEFQEA-------------------GARVANSPAEVAEDSDV   94 (327)
T ss_pred             ceeeEEeeccchHHHHHHHHHc--CCEEEEEeCcHHHHHHHHHh-------------------chhhhCCHHHHHhhcCE
Confidence            5899999999999999999999  99999999999999988763                   34567889999999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEE-EEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIV-VEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      ||+|||+|.+.              ++++   ..+.+.++++... |++||++|.++++|.+.++...    ...+.+|.
T Consensus        95 vitmv~~~~~v--------------~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~----~~~vDAPV  156 (327)
T KOG0409|consen   95 VITMVPNPKDV--------------KDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKG----GRFVDAPV  156 (327)
T ss_pred             EEEEcCChHhh--------------HHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCC----CeEEeccc
Confidence            99999987543              3444   3455556677666 8999999999999998887653    35678998


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      ..+...+....+   .|++||+     ++.++++.++|+.+++ ..++.+..+.+..+|+++|...+.++..+.|...++
T Consensus       157 SGg~~~A~~G~L---timagGd-----e~~~~~~~~~~~~mGk-~~~~~G~~GnG~~~Kl~nnm~~g~~M~g~aEal~la  227 (327)
T KOG0409|consen  157 SGGVKGAEEGTL---TIMAGGD-----EALFEAASPVFKLMGK-NVVFLGGVGNGQAAKLCNNMLLGSSMVGLAEALALA  227 (327)
T ss_pred             cCCchhhhcCeE---EEEecCc-----HHHHHHHHHHHHHhcc-eEEEecccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877555555544   5788875     8999999999999974 456778999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCCCCcccc---------CCCCCcccchhhhHHHHHHHHHHcCCc
Q 011654          238 EATGADVTQVSHAIGKDTRIGPRFLN---------SSVGFGGSCFQKDILNLVYICECNGLT  290 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~~~~~~~---------pg~g~gg~cl~kD~~~l~~~a~~~g~~  290 (480)
                      +++|+|...++++++++.--++.+..         +.|||+-..+.||+......+.+.+.+
T Consensus       228 ~r~GLd~~~l~eiln~G~~~S~~~~~~~p~m~k~dy~p~f~~~~m~KDLgla~~~a~~~~~~  289 (327)
T KOG0409|consen  228 DRLGLDAKKLLEILNTGRCWSSMFYNPVPGMLKGDYNPGFALKLMVKDLGLALNAAESVKVP  289 (327)
T ss_pred             HHcCCCHHHHHHHHhcCCcccHHHhCcCchhhcCCCCCcchHHHHHHHHHHHHHhhhccCCC
Confidence            99999999999999985311222223         335678889999999999999998877

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=99.96  E-value=1.1e-27  Score=237.39  Aligned_cols=247  Identities=17%  Similarity=0.186  Sum_probs=194.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||.+||.+|.++  ||+|++||+++. .+.+.+.                   +...+.++.+++++||+
T Consensus         1 m~Ig~IGlG~MG~~ma~~L~~~--G~~v~v~~~~~~-~~~~~~~-------------------g~~~~~s~~~~~~~adv   58 (292)
T PRK15059          1 MKLGFIGLGIMGTPMAINLARA--GHQLHVTTIGPV-ADELLSL-------------------GAVSVETARQVTEASDI   58 (292)
T ss_pred             CeEEEEccCHHHHHHHHHHHHC--CCeEEEEeCCHh-HHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence            6999999999999999999998  999999999875 3444321                   23445678888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHH---HHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR---MIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~---~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      ||+|||++              ..+++++.   ++.+.++++++||++||+.|.+++++.+.+++.+    ..++.+|..
T Consensus        59 Vi~~v~~~--------------~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G----~~~vdaPVs  120 (292)
T PRK15059         59 IFIMVPDT--------------PQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELG----GDYLDAPVS  120 (292)
T ss_pred             EEEeCCCh--------------HHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CCEEEecCC
Confidence            99999864              23455542   3566678899999999999999999998888764    235678876


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE  238 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~  238 (480)
                      ..+..+.....   .+++||+     ++.+++++++|+.+++ ..+++++.+.|..+|+++|.+.+.++..++|...+++
T Consensus       121 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~p~l~~~g~-~~~~~G~~G~g~~~Kl~~N~l~~~~~~a~~Ea~~la~  191 (292)
T PRK15059        121 GGEIGAREGTL---SIMVGGD-----EAVFERVKPLFELLGK-NITLVGGNGDGQTCKVANQIIVALNIEAVSEALLFAS  191 (292)
T ss_pred             CCHHHHhcCcE---EEEEcCC-----HHHHHHHHHHHHHHcC-CcEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            65544433221   4678886     7899999999999974 4677888999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHhcCCCCC-------CCccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHH
Q 011654          239 ATGADVTQVSHAIGKDTRI-------GPRFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQV  299 (480)
Q Consensus       239 ~~Gid~~~v~~~~~~~~~~-------~~~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~  299 (480)
                      +.|+|+++++++++..+.-       ..+++  ...++|....+.||+.+.++++++.|++  .++.+.+
T Consensus       192 ~~Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l~~~~a~~~g~~--~p~~~~~  259 (292)
T PRK15059        192 KAGADPVRVRQALMGGFASSRILEVHGERMIKRTFNPGFKIALHQKDLNLALQSAKALALN--LPNTATC  259 (292)
T ss_pred             HcCCCHHHHHHHHHcCcccCHHHHhhchhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHH
Confidence            9999999999999765311       11122  2346788999999999999999999998  5555443

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=99.96  E-value=1.3e-27  Score=237.04  Aligned_cols=245  Identities=16%  Similarity=0.126  Sum_probs=198.2

Q ss_pred             EEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEEEEe
Q 011654            6 CIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVS   85 (480)
Q Consensus         6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvVii~   85 (480)
                      |||+|.||.+||..|+++  ||+|++||+++++++.+.+.                   +...++++.++++++|+||+|
T Consensus         1 ~IGlG~mG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------g~~~~~s~~~~~~~advVil~   59 (288)
T TIGR01692         1 FIGLGNMGGPMAANLLKA--GHPVRVFDLFPDAVEEAVAA-------------------GAQAAASPAEAAEGADRVITM   59 (288)
T ss_pred             CCcccHhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCEEEEe
Confidence            689999999999999998  99999999999999888752                   234567888889999999999


Q ss_pred             ccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccccc
Q 011654           86 VNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEG  162 (480)
Q Consensus        86 Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G  162 (480)
                      ||++.              .+++++   +++.+.++++++||++||+.|++++++.+.+++.+    ..++++|...++.
T Consensus        60 vp~~~--------------~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g----~~~vdaPv~Gg~~  121 (288)
T TIGR01692        60 LPAGQ--------------HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHG----AVFMDAPVSGGVG  121 (288)
T ss_pred             CCChH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CcEEECCCCCCHH
Confidence            99642              245555   67888888999999999999999999998887754    3457899887765


Q ss_pred             ccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHhCC
Q 011654          163 TAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGA  242 (480)
Q Consensus       163 ~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gi  242 (480)
                      .+.....   .+++||+     ++.+++++++|+.+++ ..+++++.+.++.+|+++|.+.+.+++.++|...+|++.|+
T Consensus       122 ~a~~g~l---~~~~gg~-----~~~~~~~~~~l~~~g~-~~~~~g~~g~g~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gl  192 (288)
T TIGR01692       122 GARAGTL---TFMVGGV-----AEEFAAAEPVLGPMGR-NIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGL  192 (288)
T ss_pred             HHhhCcE---EEEECCC-----HHHHHHHHHHHHHhcC-CeEeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            5544332   4678886     7789999999999863 45667778999999999999999999999999999999999


Q ss_pred             CHHHHHHHhcCCCCCCC---------c-----cc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHH
Q 011654          243 DVTQVSHAIGKDTRIGP---------R-----FL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI  300 (480)
Q Consensus       243 d~~~v~~~~~~~~~~~~---------~-----~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~  300 (480)
                      |+++++++++..+.-++         .     ..  .+.++|.-..+.||+.+..++|++.|++  .++.+.+.
T Consensus       193 d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~  264 (288)
T TIGR01692       193 DPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAP--TPLGALAR  264 (288)
T ss_pred             CHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHHHHHHHHHcCCC--ChHHHHHH
Confidence            99999999986531111         0     01  2345677778899999999999999998  56555443

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.94  E-value=7.4e-25  Score=218.31  Aligned_cols=267  Identities=15%  Similarity=0.121  Sum_probs=204.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc---
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE---   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~---   78 (480)
                      |||+|||+|.||.+||.+|+++  |++|++||+++++.+.+.+.                   +.+.+.++++++++   
T Consensus         1 m~Ig~IGlG~mG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~s~~~~~~~~~~   59 (299)
T PRK12490          1 MKLGLIGLGKMGGNMAERLRED--GHEVVGYDVNQEAVDVAGKL-------------------GITARHSLEELVSKLEA   59 (299)
T ss_pred             CEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHHhCCC
Confidence            6999999999999999999998  99999999999998887642                   24456778876665   


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      +|+||+|||++              ..++++++++.+.++++++||++||+.|.+++++.+.+++.+    +.++.+|..
T Consensus        60 advVi~~vp~~--------------~~~~~v~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g----~~~vdapV~  121 (299)
T PRK12490         60 PRTIWVMVPAG--------------EVTESVIKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERG----IHYVDCGTS  121 (299)
T ss_pred             CCEEEEEecCc--------------hHHHHHHHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcC----CeEEeCCCC
Confidence            69999999864              235777788888888999999999999999999888887654    345788887


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCC--CeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPE--DRIITTNLWSAELSKLAANAFLAQRISSVNAMSAL  236 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l  236 (480)
                      ..+-.+....    .+++||+     ++++++++++++.++..  ..++.++++.|..+|+++|.+...++..+.|...+
T Consensus       122 G~~~~a~~g~----~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~g~a~~~Kl~~n~~~~~~~~~~aEa~~l  192 (299)
T PRK12490        122 GGVWGLRNGY----CLMVGGD-----KEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLEL  192 (299)
T ss_pred             CCHHHHhcCC----eEEecCC-----HHHHHHHHHHHHHhcCcCCcEEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7655444332    4788986     78999999999998631  35677889999999999999999999999999999


Q ss_pred             HHHhC--CCHHHHHHHhcCCCCCCC--------ccccCCCCCcccchhhhH---HHHHHHHHHcCCchhhhHHHHHH---
Q 011654          237 CEATG--ADVTQVSHAIGKDTRIGP--------RFLNSSVGFGGSCFQKDI---LNLVYICECNGLTEVANYWKQVI---  300 (480)
Q Consensus       237 ~~~~G--id~~~v~~~~~~~~~~~~--------~~~~pg~g~gg~cl~kD~---~~l~~~a~~~g~~~~~~~~~~~~---  300 (480)
                      +++.|  +|+.+++++++.+....+        .+..-...+.-..+.||.   .+.++.|++.|++  .+++..+.   
T Consensus       193 ~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~l~~~~KD~~~~~l~~~~A~~~g~~--~P~~~~a~~~~  270 (299)
T PRK12490        193 LDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKALAEDPKLAGIKGYVNDSGEGRWTVEEAIELAVA--APVIAASLFMR  270 (299)
T ss_pred             HHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHHHhhCCChhhhhHHHHhcCcHHHHHHHHHHcCCC--HHHHHHHHHHH
Confidence            99999  999999999985431111        111100112346778897   6888999999998  66666654   


Q ss_pred             --HHHHHhH-HHHHHHHHHHh
Q 011654          301 --KVNDYQK-NRFVNRIVSSM  318 (480)
Q Consensus       301 --~~N~~~~-~~~~~~~~~~l  318 (480)
                        ..|+.-+ ...++-+.+.+
T Consensus       271 ~~~~~~~~~~~~~~~a~~~~f  291 (299)
T PRK12490        271 FASQEDDSFHMKVVSALRNQF  291 (299)
T ss_pred             HHhCccCChHHHHHHHHHHhh
Confidence              3344434 44444444443

>PLN02858 fructose-bisphosphate aldolase

Probab=99.94  E-value=4.7e-25  Score=255.16  Aligned_cols=252  Identities=13%  Similarity=0.110  Sum_probs=201.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +++|+|||+|+||.+||.+|+++  ||+|++||+++++++.+.+.                   +...++++.+++++||
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------Ga~~~~s~~e~~~~aD  382 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHLLKS--NFSVCGYDVYKPTLVRFENA-------------------GGLAGNSPAEVAKDVD  382 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCC
Confidence            37899999999999999999998  99999999999999887642                   1234577888899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      +||+|||+|.              .+++++   .++.+.++++++||++||+.|++++++.+.+++.+  ..+.++.+|.
T Consensus       383 vVi~~V~~~~--------------~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~~g--~g~~~lDAPV  446 (1378)
T PLN02858        383 VLVIMVANEV--------------QAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLENEG--RDIKLVDAPV  446 (1378)
T ss_pred             EEEEecCChH--------------HHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhhC--CCcEEEEccC
Confidence            9999999763              234444   45777788999999999999999999988887732  2356788998


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEe-CChhHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIIT-TNLWSAELSKLAANAFLAQRISSVNAMSAL  236 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l  236 (480)
                      ..++..+.....   .+|+||+     ++.+++++++|+.++. ..++. ++++.|+.+|+++|.+.+.+++.++|+..+
T Consensus       447 sGg~~~A~~G~L---~imvgG~-----~~~~~~~~plL~~lg~-~i~~~~g~~G~a~~~KL~nN~l~~~~~aa~aEal~l  517 (1378)
T PLN02858        447 SGGVKRAAMGTL---TIMASGT-----DEALKSAGSVLSALSE-KLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAF  517 (1378)
T ss_pred             CCChhhhhcCCc---eEEEECC-----HHHHHHHHHHHHHHhC-cEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777655544322   4788986     7899999999999874 33443 579999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHhcCCCCCC-------Cccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHH
Q 011654          237 CEATGADVTQVSHAIGKDTRIG-------PRFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI  300 (480)
Q Consensus       237 ~~~~Gid~~~v~~~~~~~~~~~-------~~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~  300 (480)
                      |++.|+|+++++++++..+.-+       .+++  ...++|....+.||+.+..+.+++.|++  .++...+.
T Consensus       518 a~k~Gld~~~l~evl~~s~g~s~~~~~~~~~~l~~d~~~~f~l~l~~KDl~l~~~~a~~~g~~--~pl~~~~~  588 (1378)
T PLN02858        518 GARLGLNTRKLFDIISNAGGTSWMFENRVPHMLDNDYTPYSALDIFVKDLGIVSREGSSRKIP--LHLSTVAH  588 (1378)
T ss_pred             HHHcCCCHHHHHHHHHhhcccChhhhhccchhhcCCCCCCchhHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence            9999999999999887553211       1122  2346788899999999999999999998  45544443

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=99.94  E-value=1.1e-24  Score=227.65  Aligned_cols=252  Identities=12%  Similarity=0.069  Sum_probs=200.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc--
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE--   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~--   78 (480)
                      +++|||||||.||.+||.+|+++  ||+|++|||++++++.+.+....   .|.         ..+..+.+++++++.  
T Consensus         6 ~~~IG~IGLG~MG~~mA~nL~~~--G~~V~V~NRt~~k~~~l~~~~~~---~Ga---------~~~~~a~s~~e~v~~l~   71 (493)
T PLN02350          6 LSRIGLAGLAVMGQNLALNIAEK--GFPISVYNRTTSKVDETVERAKK---EGN---------LPLYGFKDPEDFVLSIQ   71 (493)
T ss_pred             CCCEEEEeeHHHHHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhhh---cCC---------cccccCCCHHHHHhcCC
Confidence            46899999999999999999998  99999999999999988752000   000         113356778887765  


Q ss_pred             -CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           79 -ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        79 -aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                       +|+||+|||.+              ..++++++++.+.+.+|++||++||+.|.+++++.+.+++.+    +.++.+|.
T Consensus        72 ~~dvIi~~v~~~--------------~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~G----i~fldapV  133 (493)
T PLN02350         72 KPRSVIILVKAG--------------APVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKG----LLYLGMGV  133 (493)
T ss_pred             CCCEEEEECCCc--------------HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEeCCC
Confidence             99999999864              356788888999999999999999999999999888887764    45678888


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCC-----CeEEeCChhHHHHhhhHHhHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPE-----DRIITTNLWSAELSKLAANAFLAQRISSVNA  232 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~-----~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE  232 (480)
                      ..++..+..+    +.+|+||+     ++++++++++|+.++.+     ..+++++.+.+..+|+++|.+.+..+..+.|
T Consensus       134 SGG~~gA~~G----~~im~GG~-----~~a~~~v~pvL~~ia~k~~~~~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaE  204 (493)
T PLN02350        134 SGGEEGARNG----PSLMPGGS-----FEAYKNIEDILEKVAAQVDDGPCVTYIGPGGAGNFVKMVHNGIEYGDMQLISE  204 (493)
T ss_pred             cCCHHHhcCC----CeEEecCC-----HHHHHHHHHHHHHHhhhcCCCCcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence            8776555433    26899996     88999999999998631     2567788999999999999999999999999


Q ss_pred             HHHHHHH-hCCCHHHHHHH---hcCCCCCCC------ccc----cCCCCCcccchhhhHH------HHHHHHHHcCCchh
Q 011654          233 MSALCEA-TGADVTQVSHA---IGKDTRIGP------RFL----NSSVGFGGSCFQKDIL------NLVYICECNGLTEV  292 (480)
Q Consensus       233 ~~~l~~~-~Gid~~~v~~~---~~~~~~~~~------~~~----~pg~g~gg~cl~kD~~------~l~~~a~~~g~~~~  292 (480)
                      ...++++ .|+|++++.++   ++.++--++      ..+    ..+++|-...+.||..      .....|.+.|++  
T Consensus       205 A~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~l~~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~--  282 (493)
T PLN02350        205 AYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADIFSVKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVA--  282 (493)
T ss_pred             HHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHHHhhcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCC--
Confidence            9999999 59999999988   444431111      111    1355688889999999      889999999998  


Q ss_pred             hhH
Q 011654          293 ANY  295 (480)
Q Consensus       293 ~~~  295 (480)
                      .++
T Consensus       283 ~p~  285 (493)
T PLN02350        283 APT  285 (493)
T ss_pred             ccH
Confidence            565

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.94  E-value=1.2e-26  Score=195.25  Aligned_cols=106  Identities=44%  Similarity=0.664  Sum_probs=88.0

Q ss_pred             EEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecCHH
Q 011654          328 AILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAY  407 (480)
Q Consensus       328 ~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  407 (480)
                      +|||+|||+||+|+||||++.|++.|.++|++|.+|||+++.+.......                   ..+++++++++
T Consensus         1 avlGlafK~n~~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~-------------------~~~~~~~~~~~   61 (106)
T PF03720_consen    1 AVLGLAFKPNTDDIRESPALELIEELKERGAEVSVYDPYVDEEEIKELGK-------------------LEGVEVCDDLE   61 (106)
T ss_dssp             EEE-SSSSTTSS--TT-HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCH-------------------HHCEEEESSHH
T ss_pred             CeEEEEECCCCcccccCHHHHHHHHHHHCCCEEEEECCccChHHHHhhCC-------------------ccceEEecCHH
Confidence            69999999999999999999999999999999999999999887654210                   12467888999


Q ss_pred             HhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011654          408 QAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDV  452 (480)
Q Consensus       408 ~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~  452 (480)
                      ++++++||||++|+|++|++++|+.+...|+++++|||+||+++|
T Consensus        62 ~~~~~~D~vvl~t~h~~f~~l~~~~~~~~~~~~~~iiD~~~~~d~  106 (106)
T PF03720_consen   62 EALKGADAVVLATDHDEFRELDWEEIAKLMRKPPVIIDGRNILDP  106 (106)
T ss_dssp             HHHTTESEEEESS--GGGGCCGHHHHHHHSCSSEEEEESSSTSTH
T ss_pred             HHhcCCCEEEEEecCHHHhccCHHHHHHhcCCCCEEEECccccCc
Confidence            999999999999999999999999999999777799999999986

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=99.93  E-value=7.3e-26  Score=185.40  Aligned_cols=96  Identities=42%  Similarity=0.686  Sum_probs=88.1

Q ss_pred             hhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcC
Q 011654          209 LWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNG  288 (480)
Q Consensus       209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g  288 (480)
                      +++||++|+++|+|++++|+|+||++.+|+++|+|+.+|++++++|||++..++.||+||||+|||||+.+|.+.++++|
T Consensus         1 i~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~~~~~~pg~g~GG~ClpkD~~~L~~~~~~~g   80 (96)
T PF00984_consen    1 IEEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIGPHYLRPGPGFGGSCLPKDPYALIYLAKELG   80 (96)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTTSSS-S-SSS--SSCHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccccccCCCCCCCCCcchhhhHHHHHHHHHHcC
Confidence            46899999999999999999999999999999999999999999999998889999999999999999999999999999


Q ss_pred             CchhhhHHHHHHHHHHHh
Q 011654          289 LTEVANYWKQVIKVNDYQ  306 (480)
Q Consensus       289 ~~~~~~~~~~~~~~N~~~  306 (480)
                      .+  ..++++++++|++|
T Consensus        81 ~~--~~ll~~~~~~N~~Q   96 (96)
T PF00984_consen   81 YP--PQLLEAVININERQ   96 (96)
T ss_dssp             SH--HHHHHHHHHHHHHH
T ss_pred             CC--HHHHHHHHHhcCCC
Confidence            98  67999999999986

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A ....

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.92  E-value=4.4e-23  Score=205.78  Aligned_cols=267  Identities=15%  Similarity=0.146  Sum_probs=200.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc---
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE---   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~---   78 (480)
                      |||+|||+|.||.+||.+|+++  |++|++||+++++++.+.+.                   +.+.+++++++++.   
T Consensus         1 m~Ig~IGlG~MG~~mA~~L~~~--g~~v~v~dr~~~~~~~~~~~-------------------g~~~~~~~~e~~~~~~~   59 (301)
T PRK09599          1 MQLGMIGLGRMGGNMARRLLRG--GHEVVGYDRNPEAVEALAEE-------------------GATGADSLEELVAKLPA   59 (301)
T ss_pred             CEEEEEcccHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC-------------------CCeecCCHHHHHhhcCC
Confidence            7999999999999999999998  99999999999999887642                   24556777776664   


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      +|+||+|+|++.              .++++++.+.+.+++++++|+.||+.|.+++++.+.+++.+    +.++.+|..
T Consensus        60 ~dvvi~~v~~~~--------------~~~~v~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g----~~~~dapvs  121 (301)
T PRK09599         60 PRVVWLMVPAGE--------------ITDATIDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKG----IHFVDVGTS  121 (301)
T ss_pred             CCEEEEEecCCc--------------HHHHHHHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcC----CEEEeCCCC
Confidence            699999998641              34677788888899999999999999999888888887764    345688887


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCC---CeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPE---DRIITTNLWSAELSKLAANAFLAQRISSVNAMSA  235 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~---~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~  235 (480)
                      .++..+....    .+++||+     ++.+++++++|+.+...   ..++.++++++..+|+++|++....+..+.|...
T Consensus       122 G~~~~a~~g~----~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~~~~~aEa~~  192 (301)
T PRK09599        122 GGVWGLERGY----CLMIGGD-----KEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHNGIEYGMMQAYAEGFE  192 (301)
T ss_pred             cCHHHHhcCC----eEEecCC-----HHHHHHHHHHHHHHcccccCCeEeECCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7655444331    5788986     78999999999998631   3567788999999999999999999999999999


Q ss_pred             HHHH--hCCCHHHHHHHhcCCCCCCCcc-------ccCCCCCc-ccchhhh---HHHHHHHHHHcCCchhhhHHHHHHH-
Q 011654          236 LCEA--TGADVTQVSHAIGKDTRIGPRF-------LNSSVGFG-GSCFQKD---ILNLVYICECNGLTEVANYWKQVIK-  301 (480)
Q Consensus       236 l~~~--~Gid~~~v~~~~~~~~~~~~~~-------~~pg~g~g-g~cl~kD---~~~l~~~a~~~g~~~~~~~~~~~~~-  301 (480)
                      ++++  .|+|+.++.++++....+++.+       +.-.+.+. -.-+.||   .+..+..|.+.|++  .+.+.++.. 
T Consensus       193 l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~~~~~~~kd~~~~~~~~~~A~~~~~~--~P~~~~a~~~  270 (301)
T PRK09599        193 LLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADALAEDPKLDEISGYVEDSGEGRWTVEEAIDLAVP--APVIAAALFM  270 (301)
T ss_pred             HHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHhhCcHHHHHHHHHHcCCC--HHHHHHHHHH
Confidence            9999  9999999999998653211111       11112221 1123455   47788889999998  566555321 


Q ss_pred             -----HHHHhHHHHHHHHHHHh
Q 011654          302 -----VNDYQKNRFVNRIVSSM  318 (480)
Q Consensus       302 -----~N~~~~~~~~~~~~~~l  318 (480)
                           .+...+...++-+.+.+
T Consensus       271 ~~~~~~~~~~~~~~~~a~~~~f  292 (301)
T PRK09599        271 RFRSRQEDSFADKVVAALRNGF  292 (301)
T ss_pred             HHHhccCCCcHHHHHHHHHHhc
Confidence                 12234555555555554

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=99.92  E-value=2.1e-23  Score=210.38  Aligned_cols=281  Identities=19%  Similarity=0.219  Sum_probs=198.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      ||||+|||+|.||.++|..|+++  |++|++||+++++++.+++.. ...+.++..      ...+++++++++++++++
T Consensus         1 mmkI~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~   72 (325)
T PRK00094          1 MMKIAVLGAGSWGTALAIVLARN--GHDVTLWARDPEQAAEINADRENPRYLPGIK------LPDNLRATTDLAEALADA   72 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcCcccccCCCCc------CCCCeEEeCCHHHHHhCC
Confidence            79999999999999999999998  999999999999999888642 222222211      113467788888878899


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec-CCccchHHHHHHHHHhcCCC-CceeEeeCCc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS-TVPVKTAEAIEKILTHNSRE-IKYQILSNPE  157 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g-~~~~v~~~Pe  157 (480)
                      |+||+|||++               .+.++++++.+.++++++|+..+ |+.+.+.+.+.+.+++.... ....+..+|.
T Consensus        73 D~vi~~v~~~---------------~~~~v~~~l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~  137 (325)
T PRK00094         73 DLILVAVPSQ---------------ALREVLKQLKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPS  137 (325)
T ss_pred             CEEEEeCCHH---------------HHHHHHHHHHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECcc
Confidence            9999999852               35778889999888899888776 88888777777777665321 1345667787


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHH-----------------HhhhHHh
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAE-----------------LSKLAAN  220 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae-----------------~~Kl~~N  220 (480)
                      ...+..+    ..+..+++++.    +.+..+++.++|+.... ...+..+....+                 ..|+.+|
T Consensus       138 ~~~~~~~----g~~~~~~~~~~----~~~~~~~~~~~l~~~~~-~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n  208 (325)
T PRK00094        138 FAKEVAR----GLPTAVVIAST----DEELAERVQELFHSPYF-RVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDN  208 (325)
T ss_pred             HHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCCCE-EEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            6544322    12223445554    47889999999997642 233444554444                 4789999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCC----CCC--CccccCCCCCcc--------------cchhhhHHHH
Q 011654          221 AFLAQRISSVNAMSALCEATGADVTQVSHAIGKDT----RIG--PRFLNSSVGFGG--------------SCFQKDILNL  280 (480)
Q Consensus       221 ~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~----~~~--~~~~~pg~g~gg--------------~cl~kD~~~l  280 (480)
                      ...++....++|+..+|+++|+|++.+.+.++...    ..+  .+...||.-++.              .-..||+.++
T Consensus       209 ~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~~~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~kd~~~~  288 (325)
T PRK00094        209 ARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLTCTSPLSRNRRFGLALGQGKSLEEALAEIGMVAEGVRTAKAV  288 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhhccCCCCccHHHHHHHHCCCCHHHHHHHcCCEeecHHHHHHH
Confidence            99999999999999999999999999988755330    001  111112211211              2346999999


Q ss_pred             HHHHHHcCCchhhhHHHHHHH--HHHHhHHHHHHHHH
Q 011654          281 VYICECNGLTEVANYWKQVIK--VNDYQKNRFVNRIV  315 (480)
Q Consensus       281 ~~~a~~~g~~~~~~~~~~~~~--~N~~~~~~~~~~~~  315 (480)
                      .++++++|++  .++.+++.+  .|+..|+.+++++.
T Consensus       289 ~~~a~~~~~~--~P~~~~~~~~~~~~~~~~~~~~~~~  323 (325)
T PRK00094        289 YELAKKLGVE--MPITEAVYAVLYEGKDPREAVEDLM  323 (325)
T ss_pred             HHHHHHhCCC--CCHHHHHHHHHcCCCCHHHHHHHHh
Confidence            9999999998  677776665  36666776666654

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=99.90  E-value=1.4e-21  Score=194.60  Aligned_cols=266  Identities=14%  Similarity=0.153  Sum_probs=194.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH---Hhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK---HVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~---a~~~   78 (480)
                      |||+|||+|.||.+||..|+++  ||+|++||+++++++.+.+..                   .....++++   .+..
T Consensus         1 M~Ig~IGlG~mG~~la~~L~~~--g~~V~~~dr~~~~~~~l~~~g-------------------~~~~~s~~~~~~~~~~   59 (298)
T TIGR00872         1 MQLGLIGLGRMGANIVRRLAKR--GHDCVGYDHDQDAVKAMKEDR-------------------TTGVANLRELSQRLSA   59 (298)
T ss_pred             CEEEEEcchHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcC-------------------CcccCCHHHHHhhcCC
Confidence            7999999999999999999998  999999999999999887531                   111234433   3456


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      +|+||+|||+.               .++++++++.+.++++++||+.||..|.++.++.+.+++.+    +.++.+|..
T Consensus        60 ~dvIi~~vp~~---------------~~~~v~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g----~~~vda~vs  120 (298)
T TIGR00872        60 PRVVWVMVPHG---------------IVDAVLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKG----IHLLDCGTS  120 (298)
T ss_pred             CCEEEEEcCch---------------HHHHHHHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcC----CeEEecCCC
Confidence            89999999853               35788899999999999999999998888888777776653    345677766


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCC--CeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPE--DRIITTNLWSAELSKLAANAFLAQRISSVNAMSAL  236 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~--~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l  236 (480)
                      .++..+...    ..+++||+     ++.++.++++|+.+...  ..++.++.+.+..+|+++|.+...++..+.|...+
T Consensus       121 Gg~~~a~~G----~~~~~gG~-----~~~~~~~~~~l~~~~~~~~~~~~~G~~G~~~~~K~~~n~l~~~~~~~~aE~~~l  191 (298)
T TIGR00872       121 GGVWGRERG----YCFMIGGD-----GEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEI  191 (298)
T ss_pred             CCHHHHhcC----CeeeeCCC-----HHHHHHHHHHHHHhcCcCCCEEEECCccHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            554444333    25788986     88999999999998742  35677889999999999999999999999999999


Q ss_pred             HHHh--CCCHHHHHHHhcCCCCCCCccc---------cCCC-CCccc-chhhhHHHHHHHHHHcCCchhhhHHHHHHH--
Q 011654          237 CEAT--GADVTQVSHAIGKDTRIGPRFL---------NSSV-GFGGS-CFQKDILNLVYICECNGLTEVANYWKQVIK--  301 (480)
Q Consensus       237 ~~~~--Gid~~~v~~~~~~~~~~~~~~~---------~pg~-g~gg~-cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~--  301 (480)
                      +++.  |+|.+++.++++.+.-+.+.++         .|.. .|-.. --.+|.+..+..|.+.|++  .+.+.++..  
T Consensus       192 ~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~a~~~g~p--~P~~~~al~~~  269 (298)
T TIGR00872       192 LRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIAFRESPDLAEFSGRVSDSGEGRWTVIAAIDLGVP--APVIATSLQSR  269 (298)
T ss_pred             HHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHHHhcCCcHHHHHHHHHhhccHHHHHHHHHHhCCC--HHHHHHHHHHH
Confidence            9998  5799999999987642222111         1110 01111 1234556677778888888  565554442  


Q ss_pred             ---HHH-HhHHHHHHHHHHHh
Q 011654          302 ---VND-YQKNRFVNRIVSSM  318 (480)
Q Consensus       302 ---~N~-~~~~~~~~~~~~~l  318 (480)
                         .+. ..|..+++.....+
T Consensus       270 ~~~~~~~~~~~~~~~~~r~~f  290 (298)
T TIGR00872       270 FASRDLDDFANKVLAALRKEF  290 (298)
T ss_pred             HHhCCCCCcHHHHHHHHHHhh
Confidence               122 44566666555544

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=99.89  E-value=1.2e-21  Score=204.78  Aligned_cols=210  Identities=13%  Similarity=0.098  Sum_probs=172.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc---
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA---   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~---   77 (480)
                      |++|+|||+|.||.+||.+|+++  ||+|++||+++++++.+++....   ++          ..+..+++++++++   
T Consensus         1 ~~~IgvIGLG~MG~~lA~nL~~~--G~~V~v~dr~~~~~~~l~~~~~~---~g----------~~i~~~~s~~e~v~~l~   65 (470)
T PTZ00142          1 MSDIGLIGLAVMGQNLALNIASR--GFKISVYNRTYEKTEEFVKKAKE---GN----------TRVKGYHTLEELVNSLK   65 (470)
T ss_pred             CCEEEEEeEhHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhhhh---cC----------CcceecCCHHHHHhcCC
Confidence            67999999999999999999998  99999999999999988752100   00          12456778888775   


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      .+|+||+|||.+              ..++++++++.+++.++++||+.||..+..+.+..+.+.+.+    +.++.+|.
T Consensus        66 ~~d~Iil~v~~~--------------~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~G----i~fldapV  127 (470)
T PTZ00142         66 KPRKVILLIKAG--------------EAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKG----ILYLGMGV  127 (470)
T ss_pred             CCCEEEEEeCCh--------------HHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEcCCC
Confidence            589999998753              357888899999999999999999998877777767676654    45678888


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCC-----CeEEeCChhHHHHhhhHHhHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPE-----DRIITTNLWSAELSKLAANAFLAQRISSVNA  232 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~-----~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE  232 (480)
                      ..++..+..+    +.+|+||+     ++++++++++|+.+...     ..+++++.+++..+|+++|.+.+..+..+.|
T Consensus       128 SGG~~gA~~G----~~lm~GG~-----~~a~~~~~piL~~ia~~~~~~~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaE  198 (470)
T PTZ00142        128 SGGEEGARYG----PSLMPGGN-----KEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLISE  198 (470)
T ss_pred             CCCHHHHhcC----CEEEEeCC-----HHHHHHHHHHHHHHhhhcCCCCeEEEECCCCHHHHHHHHhHHHHHHHHHHHHH
Confidence            7776555432    36899996     88999999999998742     1467788899999999999999999999999


Q ss_pred             HHHHHH-HhCCCHHHHHHHhc
Q 011654          233 MSALCE-ATGADVTQVSHAIG  252 (480)
Q Consensus       233 ~~~l~~-~~Gid~~~v~~~~~  252 (480)
                      ...+++ +.|+|.+++.+++.
T Consensus       199 a~~l~~~~~gl~~~~l~~v~~  219 (470)
T PTZ00142        199 SYKLMKHILGMSNEELSEVFN  219 (470)
T ss_pred             HHHHHHhhcCCCHHHHHHHHH
Confidence            999998 69999999988873

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.88  E-value=5.2e-21  Score=187.36  Aligned_cols=220  Identities=25%  Similarity=0.300  Sum_probs=181.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC-CCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD-QLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      +|||+|||.|.||+++|..|+++  ||+|.+|.++++.++.+++. .++-|.|+..      ...++.+++|++++++++
T Consensus         1 ~~kI~ViGaGswGTALA~~la~n--g~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~------lp~~l~at~Dl~~a~~~a   72 (329)
T COG0240           1 MMKIAVIGAGSWGTALAKVLARN--GHEVRLWGRDEEIVAEINETRENPKYLPGIL------LPPNLKATTDLAEALDGA   72 (329)
T ss_pred             CceEEEEcCChHHHHHHHHHHhc--CCeeEEEecCHHHHHHHHhcCcCccccCCcc------CCcccccccCHHHHHhcC
Confidence            68999999999999999999999  99999999999999999986 4666666653      346789999999999999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-CccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      |+|+++||+               ..++++++++..+++++.+++..|. +.++|.+.+.+++++..+...+.++++|.+
T Consensus        73 d~iv~avPs---------------~~~r~v~~~l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~  137 (329)
T COG0240          73 DIIVIAVPS---------------QALREVLRQLKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSF  137 (329)
T ss_pred             CEEEEECCh---------------HHHHHHHHHHhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccH
Confidence            999999986               3578999999888889998888875 688888899999888754334788999999


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEe-CChhHHHHh-----------------hhHHh
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIIT-TNLWSAELS-----------------KLAAN  220 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~-----------------Kl~~N  220 (480)
                      +.+-..    ..|+.+++++.    +++..++++.+|+.-  ..+++. .|+...|+.                 ++.+|
T Consensus       138 A~EVa~----g~pta~~vas~----d~~~a~~v~~~f~~~--~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~N  207 (329)
T COG0240         138 AKEVAQ----GLPTAVVVASN----DQEAAEKVQALFSSP--YFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDN  207 (329)
T ss_pred             HHHHhc----CCCcEEEEecC----CHHHHHHHHHHhCCC--cEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChh
Confidence            876432    34667888887    688999999999973  245555 576655543                 56688


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcC
Q 011654          221 AFLAQRISSVNAMSALCEATGADVTQVSHAIGK  253 (480)
Q Consensus       221 ~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~  253 (480)
                      +..++....++||.++...+|.+++++....+.
T Consensus       208 akaalitrGL~Em~rlg~~lG~~~~T~~gLsGl  240 (329)
T COG0240         208 AKAALITRGLAEMTRLGVALGAKPETFMGLSGL  240 (329)
T ss_pred             HHHHHHHhHHHHHHHHHHHhCCCcchhcccccc
Confidence            899999999999999999999999988877764

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.86  E-value=5.7e-21  Score=173.49  Aligned_cols=153  Identities=20%  Similarity=0.247  Sum_probs=122.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ||||+|||+|.||.+||.+|+++  ||+|++||+++++.+.+.+.                   +.+.+++++++++.+|
T Consensus         1 m~~Ig~IGlG~mG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~-------------------g~~~~~s~~e~~~~~d   59 (163)
T PF03446_consen    1 MMKIGFIGLGNMGSAMARNLAKA--GYEVTVYDRSPEKAEALAEA-------------------GAEVADSPAEAAEQAD   59 (163)
T ss_dssp             -BEEEEE--SHHHHHHHHHHHHT--TTEEEEEESSHHHHHHHHHT-------------------TEEEESSHHHHHHHBS
T ss_pred             CCEEEEEchHHHHHHHHHHHHhc--CCeEEeeccchhhhhhhHHh-------------------hhhhhhhhhhHhhccc
Confidence            79999999999999999999998  99999999999999988753                   4778899999999999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHH--HHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARM--IANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~--i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      +||+|||.+              ..+++++.+  +.+.+++++++|++||+.|.+++++.+.+++.+    +.++.+|..
T Consensus        60 vvi~~v~~~--------------~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g----~~~vdapV~  121 (163)
T PF03446_consen   60 VVILCVPDD--------------DAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKG----VRYVDAPVS  121 (163)
T ss_dssp             EEEE-SSSH--------------HHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTT----EEEEEEEEE
T ss_pred             ceEeecccc--------------hhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhcc----ceeeeeeee
Confidence            999999853              457888888  999999999999999999999999999888764    566788876


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCC
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVP  200 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~  200 (480)
                      .++..+.....   .+++||+     ++++++++++|+.++.
T Consensus       122 Gg~~~a~~g~l---~~~~gG~-----~~~~~~~~~~l~~~~~  155 (163)
T PF03446_consen  122 GGPPGAEEGTL---TIMVGGD-----EEAFERVRPLLEAMGK  155 (163)
T ss_dssp             SHHHHHHHTTE---EEEEES------HHHHHHHHHHHHHHEE
T ss_pred             cccccccccce---EEEccCC-----HHHHHHHHHHHHHHhC
Confidence            66544433322   4788986     8899999999999863

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=99.85  E-value=4.7e-20  Score=192.87  Aligned_cols=206  Identities=12%  Similarity=0.137  Sum_probs=165.6

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh---ccC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV---AEA   79 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~---~~a   79 (480)
                      +|+|||+|.||.+||.+|+++  ||+|++||+++++++.+.+....              ...+..++++++.+   +.+
T Consensus         1 ~IG~IGLG~MG~~mA~nL~~~--G~~V~v~drt~~~~~~l~~~~~~--------------g~~~~~~~s~~e~v~~l~~~   64 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMADH--GFTVSVYNRTPEKTDEFLAEHAK--------------GKKIVGAYSIEEFVQSLERP   64 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHhhccC--------------CCCceecCCHHHHHhhcCCC
Confidence            489999999999999999998  99999999999999988752100              01234455666644   468


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      |+||+|||.+              ..+.++++++.++++++++||+.||+.+..+.+..+.+.+.+    +.++.+|...
T Consensus        65 dvIil~v~~~--------------~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~g----i~fvdapVsG  126 (467)
T TIGR00873        65 RKIMLMVKAG--------------APVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKG----ILFVGSGVSG  126 (467)
T ss_pred             CEEEEECCCc--------------HHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcC----CEEEcCCCCC
Confidence            9999999853              346778889999999999999999987777766666666553    4567888877


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCC-----eEEeCChhHHHHhhhHHhHHHHHHHHHHHHHH
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPED-----RIITTNLWSAELSKLAANAFLAQRISSVNAMS  234 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~-----~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~  234 (480)
                      ++..+..+    +.+|+||+     ++++++++++|+.+....     .+++++.+++..+|+++|.+....+..+.|..
T Consensus       127 G~~gA~~G----~~im~GG~-----~~a~~~~~p~L~~ia~~~~~~~~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~  197 (467)
T TIGR00873       127 GEEGARKG----PSIMPGGS-----AEAWPLVAPIFQKIAAKVDGEPCCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAY  197 (467)
T ss_pred             CHHHHhcC----CcCCCCCC-----HHHHHHHHHHHHHHhhhcCCCCceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            76555433    25788986     889999999999987421     25778889999999999999999999999999


Q ss_pred             HHHH-HhCCCHHHHHHHh
Q 011654          235 ALCE-ATGADVTQVSHAI  251 (480)
Q Consensus       235 ~l~~-~~Gid~~~v~~~~  251 (480)
                      .+++ +.|+|.+++.+++
T Consensus       198 ~ll~~~~g~~~~~l~~v~  215 (467)
T TIGR00873       198 DILKDGLGLSNEEIAEVF  215 (467)
T ss_pred             HHHHHhcCCCHHHHHHHH
Confidence            9985 7999999999988

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.85  E-value=1.3e-19  Score=183.05  Aligned_cols=276  Identities=16%  Similarity=0.113  Sum_probs=188.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      +|||+|||+|.||.++|..|+++  ||+|++|++++++.+.+++.. ...+.++..      ...++..+++++++++++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~~~--G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~------~~~~~~~~~~~~e~~~~a   75 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAASK--GVPVRLWARRPEFAAALAAERENREYLPGVA------LPAELYPTADPEEALAGA   75 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHhCcccccCCCCc------CCCCeEEeCCHHHHHcCC
Confidence            58999999999999999999998  999999999999998888532 222222210      012366778888888999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-Cccch--HHHHHHHHHhcCCCCceeEeeCC
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VPVKT--AEAIEKILTHNSREIKYQILSNP  156 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt--~~~l~~~l~~~~~g~~~~v~~~P  156 (480)
                      |+||+|||+.               .++++    .+.++++.+++..++ +.+.+  .+.+.+.+++.. ...+.+..+|
T Consensus        76 D~Vi~~v~~~---------------~~~~v----~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~-~~~~~~~~gP  135 (328)
T PRK14618         76 DFAVVAVPSK---------------ALRET----LAGLPRALGYVSCAKGLAPDGGRLSELARVLEFLT-QARVAVLSGP  135 (328)
T ss_pred             CEEEEECchH---------------HHHHH----HHhcCcCCEEEEEeeccccCCCccchHHHHHHHhc-CCCeEEEECc
Confidence            9999999853               12333    355667788887777 56654  566777775511 0123456677


Q ss_pred             ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEe-CC-----------------hhHHHHhhhH
Q 011654          157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIIT-TN-----------------LWSAELSKLA  218 (480)
Q Consensus       157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~-----------------~~~ae~~Kl~  218 (480)
                      ....+...-....   .++.|+     +++..++++++|+..+  .+++. .|                 .+.+...|+.
T Consensus       136 ~~a~~~~~~~~~~---~~~~~~-----~~~~~~~v~~ll~~~~--~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~  205 (328)
T PRK14618        136 NHAEEIARFLPAA---TVVASP-----EPGLARRVQAAFSGPS--FRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLG  205 (328)
T ss_pred             cHHHHHHcCCCeE---EEEEeC-----CHHHHHHHHHHhCCCc--EEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCC
Confidence            6655432211111   244454     3788999999999864  34432 22                 3556677899


Q ss_pred             HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC-------CCCCCcc------cc------CCCCCcccchhhhHHH
Q 011654          219 ANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKD-------TRIGPRF------LN------SSVGFGGSCFQKDILN  279 (480)
Q Consensus       219 ~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~-------~~~~~~~------~~------pg~g~gg~cl~kD~~~  279 (480)
                      +|...++..+.++|+..+++++|+|+++++++++..       ++.+.++      ..      ..++|.-.-..||..+
T Consensus       206 ~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t~~s~~~rn~~~g~~~~~g~~~~~~~~~~~~~~g~kd~~~  285 (328)
T PRK14618        206 DNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIATATSPHSRNRAAGEAIVRGVDREHLEAGGKVVEGLYTVKA  285 (328)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeEeccCCCccHHHHHHHhCCCCHHHHHHcCCEEecHHHHHH
Confidence            999999999999999999999999999999988741       1111111      11      1123445567799999


Q ss_pred             HHHHHHHcCCchhhhHHHHHHHH--HHHhHHHHHHHHHH
Q 011654          280 LVYICECNGLTEVANYWKQVIKV--NDYQKNRFVNRIVS  316 (480)
Q Consensus       280 l~~~a~~~g~~~~~~~~~~~~~~--N~~~~~~~~~~~~~  316 (480)
                      +..+++++|++  .++++.+.++  |+.-|...++.+++
T Consensus       286 ~~~la~~~~~~--~Pl~~~~~~~~~~~~~~~~~~~~~~~  322 (328)
T PRK14618        286 LDAWAKAHGHD--LPIVEAVARVARGGWDPLAGLRSLMG  322 (328)
T ss_pred             HHHHHHHhCCC--CCHHHHHHHHHhCCCCHHHHHHHHhc
Confidence            99999999998  6777766653  44456766666543

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.80  E-value=9e-18  Score=168.13  Aligned_cols=247  Identities=16%  Similarity=0.074  Sum_probs=163.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC----------CCCCCCChHHHHHhhcCCCEEEec
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ----------LPIYEPGLEDVVTQCRGRNLFFST   70 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~----------~~~~e~~l~~l~~~~~~~~l~~t~   70 (480)
                      ||+|+|||+|.||.+||..|+++  |++|++||++++.++..++..          ..+.+.....+     .+++++++
T Consensus         2 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~-----~~~i~~~~   74 (308)
T PRK06129          2 MGSVAIIGAGLIGRAWAIVFARA--GHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAV-----LARIRVTD   74 (308)
T ss_pred             CcEEEEECccHHHHHHHHHHHHC--CCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHH-----hcCeEEEC
Confidence            68999999999999999999998  999999999998877644210          00000011111     13578899


Q ss_pred             CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCce
Q 011654           71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKY  150 (480)
Q Consensus        71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~  150 (480)
                      ++++++++||+|++|+|...             ......++.+.+..+++. ++.+||.+ -....+++.+...    ..
T Consensus        75 ~~~~a~~~ad~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~-ii~ssts~-~~~~~la~~~~~~----~~  135 (308)
T PRK06129         75 SLADAVADADYVQESAPENL-------------ELKRALFAELDALAPPHA-ILASSTSA-LLASAFTEHLAGR----ER  135 (308)
T ss_pred             cHHHhhCCCCEEEECCcCCH-------------HHHHHHHHHHHHhCCCcc-eEEEeCCC-CCHHHHHHhcCCc----cc
Confidence            99988899999999998642             223455666766666555 44555543 3445565555332    23


Q ss_pred             eEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHH
Q 011654          151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSV  230 (480)
Q Consensus       151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~  230 (480)
                      ++..+|-.  +....     +-..++++..  +++++++.++++++.+++ .++++.....+.    +.|.   +..+++
T Consensus       136 ~~~~hp~~--p~~~~-----~lveiv~~~~--t~~~~~~~~~~~~~~lG~-~~v~v~~~~~G~----i~nr---l~~a~~  198 (308)
T PRK06129        136 CLVAHPIN--PPYLI-----PVVEVVPAPW--TAPATLARAEALYRAAGQ-SPVRLRREIDGF----VLNR---LQGALL  198 (308)
T ss_pred             EEEEecCC--CcccC-----ceEEEeCCCC--CCHHHHHHHHHHHHHcCC-EEEEecCCCccH----HHHH---HHHHHH
Confidence            56667752  22111     1123565432  268899999999999863 345554333332    3443   356899


Q ss_pred             HHHHHHHHHhCCCHHHHHHHhcCCCCC-----CCccc--cCCCCCcccchhhhHHHHHHHHHHcCCc
Q 011654          231 NAMSALCEATGADVTQVSHAIGKDTRI-----GPRFL--NSSVGFGGSCFQKDILNLVYICECNGLT  290 (480)
Q Consensus       231 nE~~~l~~~~Gid~~~v~~~~~~~~~~-----~~~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~  290 (480)
                      +|+..++++.|+|++++.+++......     |+..+  ..++|+-...+.||..+..+.+++.+.+
T Consensus       199 ~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~~gp~~~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~  265 (308)
T PRK06129        199 REAFRLVADGVASVDDIDAVIRDGLGLRWSFMGPFETIDLNAPGGVADYAQRYGPMYRRMAAERGQP  265 (308)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHhccCCCccCcCHHHHHhccccccHHHHHHHHHHHHHhhccccCCC
Confidence            999999999999999999999765322     21111  2335566678889999999888888876

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=99.80  E-value=3.9e-18  Score=177.76  Aligned_cols=196  Identities=13%  Similarity=0.162  Sum_probs=164.1

Q ss_pred             hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc---CcEEEEeccC
Q 011654           12 VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE---ADIVFVSVNT   88 (480)
Q Consensus        12 ~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~---aDvVii~Vpt   88 (480)
                      ||.+||.+|+++  ||+|++||+++++++.+.+....              ..+++.+.+++++++.   +|+||+|||.
T Consensus         1 MG~~mA~nL~~~--G~~V~v~nrt~~~~~~l~~~~g~--------------~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~   64 (459)
T PRK09287          1 MGKNLALNIASH--GYTVAVYNRTPEKTDEFLAEEGK--------------GKKIVPAYTLEEFVASLEKPRKILLMVKA   64 (459)
T ss_pred             CcHHHHHHHHhC--CCeEEEECCCHHHHHHHHHhhCC--------------CCCeEeeCCHHHHHhhCCCCCEEEEECCC
Confidence            899999999999  99999999999999988752000              0246777889987764   8999999986


Q ss_pred             CCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccccccccccc
Q 011654           89 PTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDL  168 (480)
Q Consensus        89 p~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~  168 (480)
                      +              ..+.++++++.+.+.+|++||+.||+.+..+++..+.+++.+    +.++.+|...++..+..+ 
T Consensus        65 g--------------~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~G----i~fvdapVSGG~~gA~~G-  125 (459)
T PRK09287         65 G--------------APVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKG----IHFIGMGVSGGEEGALHG-  125 (459)
T ss_pred             c--------------hHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcC----CeEEecCCCCCHHHHhcC-
Confidence            5              356788899999999999999999998888888877787764    456788888776555433 


Q ss_pred             CCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCe-------EEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHH-Hh
Q 011654          169 FNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDR-------IITTNLWSAELSKLAANAFLAQRISSVNAMSALCE-AT  240 (480)
Q Consensus       169 ~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~-------v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~-~~  240 (480)
                         +.+|+||+     ++++++++++|+.+.. ..       .++++.+++..+|+++|.+....+..+.|...+++ ++
T Consensus       126 ---~siM~GG~-----~~a~~~~~piL~~ia~-~~~~g~~c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~  196 (459)
T PRK09287        126 ---PSIMPGGQ-----KEAYELVAPILEKIAA-KVEDGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGL  196 (459)
T ss_pred             ---CEEEEeCC-----HHHHHHHHHHHHHHhh-hhcCCCCceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence               36899996     8899999999999874 22       67788899999999999999999999999999999 58


Q ss_pred             CCCHHHHHHHh
Q 011654          241 GADVTQVSHAI  251 (480)
Q Consensus       241 Gid~~~v~~~~  251 (480)
                      |+|.+++.+++
T Consensus       197 Gl~~~~l~~v~  207 (459)
T PRK09287        197 GLSAEEIADVF  207 (459)
T ss_pred             CCCHHHHHHHH
Confidence            99999999888

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.79  E-value=4.6e-18  Score=170.21  Aligned_cols=250  Identities=16%  Similarity=0.176  Sum_probs=170.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||.++|..|+++  ||+|++|++++.                                ++++++++++|+
T Consensus         5 m~I~iiG~G~~G~~lA~~l~~~--G~~V~~~~r~~~--------------------------------~~~~~~~~~adv   50 (308)
T PRK14619          5 KTIAILGAGAWGSTLAGLASAN--GHRVRVWSRRSG--------------------------------LSLAAVLADADV   50 (308)
T ss_pred             CEEEEECccHHHHHHHHHHHHC--CCEEEEEeCCCC--------------------------------CCHHHHHhcCCE
Confidence            7999999999999999999998  999999998632                                245667889999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhh-CCCCCEEEEecC-CccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV-SNSNKIVVEKST-VPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      ||+|+|+.               .++++++.+.++ ++++++|+.+|+ ++|.+.+.+.+.+........+.++.+|...
T Consensus        51 vi~~vp~~---------------~~~~v~~~l~~~~~~~~~ivi~~s~gi~~~~~~~~s~~~~~~~~~~~v~~i~gp~~a  115 (308)
T PRK14619         51 IVSAVSMK---------------GVRPVAEQVQALNLPPETIIVTATKGLDPETTRTPSQIWQAAFPNHPVVVLSGPNLS  115 (308)
T ss_pred             EEEECChH---------------HHHHHHHHHHHhcCCCCcEEEEeCCcccCCCCcCHHHHHHHHcCCCceEEEECCCcH
Confidence            99999852               356777888764 677888888776 7777766666666543222233344666543


Q ss_pred             cccccccccCCCC-eEEEEeCCCcchHHHHHHHHHHHhccCCCCeEE-eCChhH-----------------HHHhhhHHh
Q 011654          160 AEGTAIQDLFNPD-RVLIGGRETPEGQKAIQALKDVYAHWVPEDRII-TTNLWS-----------------AELSKLAAN  220 (480)
Q Consensus       160 ~~G~a~~~~~~~~-~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~-~~~~~~-----------------ae~~Kl~~N  220 (480)
                      .+-.  .  ..+. .+++|+     +.+..+.++++|+...  ..++ ..|+..                 +...|+.+|
T Consensus       116 ~ei~--~--~~~~~~~~ag~-----~~~~~~~v~~ll~~~~--~~~~~~~d~~G~~~~~alkNv~ai~~G~~~~~~l~~N  184 (308)
T PRK14619        116 KEIQ--Q--GLPAATVVASR-----DLAAAETVQQIFSSER--FRVYTNSDPLGTELGGTLKNVIAIAAGVCDGLQLGTN  184 (308)
T ss_pred             HHHh--c--CCCeEEEEEeC-----CHHHHHHHHHHhCCCc--EEEEecCCchhhhhHHHHHHHHHHHHHHHHHcCCCcc
Confidence            2200  0  0111 244444     3788999999999864  2443 344322                 334458889


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCC-CC------CCccccCCCCCcccch----------------hhhH
Q 011654          221 AFLAQRISSVNAMSALCEATGADVTQVSHAIGKDT-RI------GPRFLNSSVGFGGSCF----------------QKDI  277 (480)
Q Consensus       221 ~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~-~~------~~~~~~pg~g~gg~cl----------------~kD~  277 (480)
                      ...++....++|+..+++++|+|+..+++..+... ..      +.++ .+  ||.-.-.                .||.
T Consensus       185 ~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~~g~gd~~~t~~~~~~rn~-~~--g~~l~~g~~~~~~~~~~~~~~eG~~~~  261 (308)
T PRK14619        185 AKAALVTRALPEMIRVGTHLGAQTETFYGLSGLGDLLATCTSPLSRNY-QV--GYGLAQGKSLEQILAELEGTAEGVNTA  261 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccccccccchhhhheeecCCCCccH-HH--HHHHHCCCCHHHHHHhcCCEeecHHHH
Confidence            99999999999999999999999999987543221 00      1111 22  2211122                6899


Q ss_pred             HHHHHHHHHcCCchhhhHHHHHHHH--HHHhHHHHHHHHHH
Q 011654          278 LNLVYICECNGLTEVANYWKQVIKV--NDYQKNRFVNRIVS  316 (480)
Q Consensus       278 ~~l~~~a~~~g~~~~~~~~~~~~~~--N~~~~~~~~~~~~~  316 (480)
                      ..+.+++++.|++  .++...+.++  |+.-|+.+++.+++
T Consensus       262 ~~~~~~~~~~~~~--~Pl~~~v~~i~~~~~~~~~~~~~l~~  300 (308)
T PRK14619        262 NVLVQLAQQQNIA--VPITEQVYRLLQGEITPQQALEELME  300 (308)
T ss_pred             HHHHHHHHHcCCC--CCHHHHHHHHHcCCCCHHHHHHHHHc
Confidence            9999999999998  6777766543  44556666666544

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=99.79  E-value=1.9e-17  Score=166.80  Aligned_cols=263  Identities=13%  Similarity=0.039  Sum_probs=180.2

Q ss_pred             cEEEEEcCChh--------------------HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh
Q 011654            2 VKICCIGAGYV--------------------GGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC   61 (480)
Q Consensus         2 mkI~VIGlG~~--------------------G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~   61 (480)
                      |||+|.|+|+-                    |.+||.+|+++  ||+|++||++++..+.-+          .+.+.   
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~MA~~La~a--G~~V~v~Dr~~~~l~~~~----------~~~l~---   65 (342)
T PRK12557          1 MKVSVYGAGNQKLYLEQLNLPEKFGGEPPYGGSRMAIEFAEA--GHDVVLAEPNRSILSEEL----------WKKVE---   65 (342)
T ss_pred             CeeEEEcCcchhHHHHHhCCHHhcCCCCCcCHHHHHHHHHhC--CCeEEEEECCHHHhhHHH----------HHHHH---
Confidence            89999999964                    99999999998  999999999987543200          00010   


Q ss_pred             cCCCEEEecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH-HHHHHH
Q 011654           62 RGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA-EAIEKI  140 (480)
Q Consensus        62 ~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~-~~l~~~  140 (480)
                       ..+++++++..+++++||+||+|+|++              ..++++++++.+.++++++|++.||+++.+. +.+.+.
T Consensus        66 -~~Gi~~asd~~eaa~~ADvVIlaVP~~--------------~~v~~Vl~~L~~~L~~g~IVId~ST~~~~~~s~~l~~~  130 (342)
T PRK12557         66 -DAGVKVVSDDAEAAKHGEIHILFTPFG--------------KKTVEIAKNILPHLPENAVICNTCTVSPVVLYYSLEGE  130 (342)
T ss_pred             -HCCCEEeCCHHHHHhCCCEEEEECCCc--------------HHHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHHH
Confidence             124677788888889999999999853              1357788899999999999999999988876 667666


Q ss_pred             HHhcCCCCceeEeeCCccccccccccccCCCCeEEEEeCC---CcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhh
Q 011654          141 LTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE---TPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKL  217 (480)
Q Consensus       141 l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~---~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl  217 (480)
                      +........+. ...|-.. +|.....+    .++.|+..   ...+++.+++++++|+.++  .++++.+++.+..+|+
T Consensus       131 l~~~~~~~gi~-~~~p~~v-~Gae~g~l----~Vm~gg~t~~~~~~~~e~~e~v~~LL~a~G--~~v~~~~~g~~~~vk~  202 (342)
T PRK12557        131 LRTKRKDVGIS-SMHPAAV-PGTPQHGH----YVIAGKTTNGTELATEEQIEKCVELAESIG--KEPYVVPADVVSAVAD  202 (342)
T ss_pred             hcccccccCee-ecCCccc-cccccchh----eEEeCCCcccccCCCHHHHHHHHHHHHHcC--CEEEEeCHHHHHHHHH
Confidence            64321111111 1123211 12111111    24444411   1124788899999999985  4677778899999999


Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHH
Q 011654          218 AANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWK  297 (480)
Q Consensus       218 ~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~  297 (480)
                      ++|.+.++.++...|...++++.|.++.++.+-+....-.+..-+--.-|+.|--=.-||..|+..|++..+.+..+.+.
T Consensus       203 ~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~~~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (342)
T PRK12557        203 MGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQILMTLQTMASLVETSGVDGLLKALNPELLLRSASSMHLLEKQKDLD  282 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhcCHHHHhhhHhhCCcchhhhhHH
Confidence            99999999999999999999999999999888665433111111111112333333348889999999877765555566


Q ss_pred             HHHHH
Q 011654          298 QVIKV  302 (480)
Q Consensus       298 ~~~~~  302 (480)
                      ++.++
T Consensus       283 ~~~~~  287 (342)
T PRK12557        283 AALEI  287 (342)
T ss_pred             HHHHH
Confidence            55544

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=99.78  E-value=1.1e-17  Score=168.54  Aligned_cols=217  Identities=16%  Similarity=0.163  Sum_probs=167.3

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCC--------CeEEEEeC-----CHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEE
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPK--------IEVAVVDI-----SVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFF   68 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G--------~~V~~~D~-----~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~   68 (480)
                      ||+|||.|.||+++|..|+++  |        |+|.+|.+     +++..+.+++.+ ++.+.|++.      ...++++
T Consensus         1 kI~VIGaG~wGtALA~~la~n--g~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~------Lp~~i~a   72 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAEN--ARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIK------LPANLVA   72 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHc--CCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCc------CCCCeEE
Confidence            699999999999999999998  8        99999999     778888888653 454555542      1346889


Q ss_pred             ecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-Cccc--hHHHHHHHHHhcC
Q 011654           69 STDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VPVK--TAEAIEKILTHNS  145 (480)
Q Consensus        69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~g--t~~~l~~~l~~~~  145 (480)
                      ++|++++++++|+||++||+               ..++++++++.+++++++++|..+. +.+.  +...+.+++++..
T Consensus        73 t~dl~eal~~ADiIIlAVPs---------------~~i~~vl~~l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l  137 (342)
T TIGR03376        73 VPDLVEAAKGADILVFVIPH---------------QFLEGICKQLKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEEL  137 (342)
T ss_pred             ECCHHHHHhcCCEEEEECCh---------------HHHHHHHHHHHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHh
Confidence            99999999999999999985               3478889999999988887776654 5555  6667777777654


Q ss_pred             CCCceeEeeCCccccccccccccCCCCeEEEEeCCCcch----HHHHHHHHHHHhccCCCCeEEe-CChhHHHHh-----
Q 011654          146 REIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEG----QKAIQALKDVYAHWVPEDRIIT-TNLWSAELS-----  215 (480)
Q Consensus       146 ~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~----~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~-----  215 (480)
                       +..+.++++|.++.+-..    ..|..+++++.    +    .+..+.++++|++-  ..+++. .|+...|+.     
T Consensus       138 -~~~~~~lsGP~~A~Eva~----~~pt~~~ia~~----~~~~~~~~a~~~~~lf~~~--~frv~~s~Dv~GvEl~galKN  206 (342)
T TIGR03376       138 -GIPCGVLSGANLANEVAK----EKFSETTVGYR----DPADFDVDARVLKALFHRP--YFRVNVVDDVAGVEIAGALKN  206 (342)
T ss_pred             -CCCeEEeeCcchHHHHHc----CCCceEEEEeC----CCcchHHHHHHHHHHhCCC--CEEEEEcCCcccchhhHHHHH
Confidence             346788999998776432    34566778887    5    78899999999863  234554 576655544     


Q ss_pred             ------------hhHHhHHHHHHHHHHHHHHHHHHHhCCCHH--HHHHHhcC
Q 011654          216 ------------KLAANAFLAQRISSVNAMSALCEATGADVT--QVSHAIGK  253 (480)
Q Consensus       216 ------------Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~--~v~~~~~~  253 (480)
                                  ++-.|+..++....++||.++++.+|.+++  +++...+.
T Consensus       207 v~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~l~~~~g~~~~~~T~~gl~G~  258 (342)
T TIGR03376       207 VVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKFARMFFPTGEVTFTFESCGV  258 (342)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchh
Confidence                        466788899999999999999999998766  66665553

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.78  E-value=2.3e-17  Score=167.34  Aligned_cols=220  Identities=16%  Similarity=0.119  Sum_probs=164.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCC-CCCC-ChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLP-IYEP-GLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~-~~e~-~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      +|||+|||+|.||+++|..|+++  | +|++|.++++.++.+++.+.. .+.+ +. .     ...++.+++|+.+++++
T Consensus         7 ~mkI~IiGaGa~G~alA~~La~~--g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~-~-----l~~~i~~t~d~~~a~~~   77 (341)
T PRK12439          7 EPKVVVLGGGSWGTTVASICARR--G-PTLQWVRSAETADDINDNHRNSRYLGNDV-V-----LSDTLRATTDFAEAANC   77 (341)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC--C-CEEEEeCCHHHHHHHHhcCCCcccCCCCc-c-----cCCCeEEECCHHHHHhc
Confidence            58999999999999999999998  7 688999999999999976432 2222 11 0     12457889999888899


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe-cCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK-STVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      +|+||+|||+               ..++++++++.++++++++|+.. ..++.++.+.+.+.+++...+..+.+..+|.
T Consensus        78 aDlVilavps---------------~~~~~vl~~i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~  142 (341)
T PRK12439         78 ADVVVMGVPS---------------HGFRGVLTELAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPN  142 (341)
T ss_pred             CCEEEEEeCH---------------HHHHHHHHHHHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCC
Confidence            9999999985               24688999999999887766544 4677777777777776643223456778888


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEE-eCChhHHHHhhhHHhH---------------
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRII-TTNLWSAELSKLAANA---------------  221 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~-~~~~~~ae~~Kl~~N~---------------  221 (480)
                      ++.+...    ..+..+++++.    +++..+.++++|+.-.  .+++ ..|+...||.|.+.|.               
T Consensus       143 ~a~ev~~----g~~t~~via~~----~~~~~~~v~~lf~~~~--~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~  212 (341)
T PRK12439        143 IAREVAE----GYAAAAVLAMP----DQHLATRLSPLFRTRR--FRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGE  212 (341)
T ss_pred             HHHHHHc----CCCeEEEEEeC----CHHHHHHHHHHhCCCC--EEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            7765221    12334667776    4778899999998742  3444 4699999999877664               


Q ss_pred             --HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          222 --FLAQRISSVNAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       222 --~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                        ..++....++|+.++++++|.+++++....+..
T Consensus       213 n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~G  247 (341)
T PRK12439        213 NTRAMVIARALREMTKLGVAMGGNPETFAGLAGMG  247 (341)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCcccccccchhh
Confidence              456677899999999999999999988876643

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.78  E-value=1.2e-17  Score=169.25  Aligned_cols=219  Identities=15%  Similarity=0.150  Sum_probs=168.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC-------CeEEEEeCCHH-----HHHHHHCC-CCCCCCCChHHHHHhhcCCCEEE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK-------IEVAVVDISVS-----RIAAWNGD-QLPIYEPGLEDVVTQCRGRNLFF   68 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G-------~~V~~~D~~~~-----~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~~   68 (480)
                      |||+|||.|.||+++|..|+++  |       |+|.+|.++++     .++.+++. +++.|.|++.      ...++.+
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n--~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~------Lp~ni~~   83 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGEN--TQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIK------LPDNIVA   83 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc--CCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCc------CCCceEE
Confidence            7999999999999999999998  6       89999999986     48888865 4666777764      2467899


Q ss_pred             ecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHh--hCCCCCEEEEec-CCccchH--HHHHHHHHh
Q 011654           69 STDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAN--VSNSNKIVVEKS-TVPVKTA--EAIEKILTH  143 (480)
Q Consensus        69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~--~l~~~~iVi~~S-Tv~~gt~--~~l~~~l~~  143 (480)
                      ++|+.++++++|+|+++||+               ..++++++++.+  +++++.+||..+ .+.+.+.  ..+.+++++
T Consensus        84 tsdl~eav~~aDiIvlAVPs---------------q~l~~vl~~l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e  148 (365)
T PTZ00345         84 VSDLKEAVEDADLLIFVIPH---------------QFLESVLSQIKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEE  148 (365)
T ss_pred             ecCHHHHHhcCCEEEEEcCh---------------HHHHHHHHHhccccccCCCCEEEEEeCCcccCCCCcccHHHHHHH
Confidence            99999999999999999985               246888999988  777776776555 3555443  446666665


Q ss_pred             cCCCCceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEe-CChhHHHHh-------
Q 011654          144 NSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIIT-TNLWSAELS-------  215 (480)
Q Consensus       144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~-------  215 (480)
                      .. +..+.++++|.++.+-..    ..|..+++++.    +++..+.++++|++-  ..+++. .|+...|+.       
T Consensus       149 ~l-~~~~~~LsGPs~A~Eva~----~~pt~~vias~----~~~~a~~~~~lf~~~--~frvy~s~Dv~GvEl~galKNvi  217 (365)
T PTZ00345        149 EL-GIPCCALSGANVANDVAR----EEFSEATIGCE----DKDDALIWQRLFDRP--YFKINCVPDVIGVEVCGALKNII  217 (365)
T ss_pred             Hh-CCCeEEEECCCHHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCC--cEEEEEcCCcccchhhHHHHHHH
Confidence            44 235778899988776432    34667788887    588899999999863  234554 466555543       


Q ss_pred             ----------hhHHhHHHHHHHHHHHHHHHHHHHhCC--CHHHHHHHhcCC
Q 011654          216 ----------KLAANAFLAQRISSVNAMSALCEATGA--DVTQVSHAIGKD  254 (480)
Q Consensus       216 ----------Kl~~N~~~~~~ia~~nE~~~l~~~~Gi--d~~~v~~~~~~~  254 (480)
                                ++..|+..++....++||.++++++|.  ++++++..++.+
T Consensus       218 AIa~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~~~~T~~glaG~G  268 (365)
T PTZ00345        218 ALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNVMDETFFESCGLA  268 (365)
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhCCCCCccchhccchHh
Confidence                      566888999999999999999999974  888888877643

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=99.76  E-value=6.9e-17  Score=164.13  Aligned_cols=261  Identities=18%  Similarity=0.183  Sum_probs=164.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCC-CChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYE-PGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e-~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      ||||+|||+|.||.++|..|+++  ||+|++||+++. .+.+++....+.. .+.+..   ...++++++++.+ ++.++
T Consensus         2 ~mkI~IiG~G~mG~~~A~~L~~~--G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~   74 (341)
T PRK08229          2 MARICVLGAGSIGCYLGGRLAAA--GADVTLIGRARI-GDELRAHGLTLTDYRGRDVR---VPPSAIAFSTDPA-ALATA   74 (341)
T ss_pred             CceEEEECCCHHHHHHHHHHHhc--CCcEEEEecHHH-HHHHHhcCceeecCCCccee---cccceeEeccChh-hccCC
Confidence            58999999999999999999998  999999999764 4667654332221 111100   1123456677774 57899


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      |+||+|||++.               +.++++.+.+.++++++|+.. +...+..+.+.+.+.+... ..-.+..+....
T Consensus        75 D~vil~vk~~~---------------~~~~~~~l~~~~~~~~iii~~-~nG~~~~~~l~~~~~~~~~-~~g~~~~~~~~~  137 (341)
T PRK08229         75 DLVLVTVKSAA---------------TADAAAALAGHARPGAVVVSF-QNGVRNADVLRAALPGATV-LAGMVPFNVISR  137 (341)
T ss_pred             CEEEEEecCcc---------------hHHHHHHHHhhCCCCCEEEEe-CCCCCcHHHHHHhCCCCcE-EEEEEEEEEEec
Confidence            99999998642               256778888888888877654 4566666667666543210 000001111233


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHH-------------
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQR-------------  226 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~-------------  226 (480)
                      +||......  ..++.+|..      +..+.+.++|+.... ...+..|+..++|.|++.|++..++             
T Consensus       138 ~pg~~~~~~--~g~l~~~~~------~~~~~~~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~  208 (341)
T PRK08229        138 GPGAFHQGT--SGALAIEAS------PALRPFAAAFARAGL-PLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQ  208 (341)
T ss_pred             CCceEEecC--CCceEecCC------chHHHHHHHHHhcCC-CceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcC
Confidence            445432211  123455532      346788999987642 3456679999999999999755555             


Q ss_pred             -------HHHHHHHHHHHHHhCCCHHHHHHHhcCC--------CC----CCCccccCCCCCcccchhhhHH---------
Q 011654          227 -------ISSVNAMSALCEATGADVTQVSHAIGKD--------TR----IGPRFLNSSVGFGGSCFQKDIL---------  278 (480)
Q Consensus       227 -------ia~~nE~~~l~~~~Gid~~~v~~~~~~~--------~~----~~~~~~~pg~g~gg~cl~kD~~---------  278 (480)
                             ...+.|...+|++.|+++..+..+....        ..    +...++...+. ....+.+|..         
T Consensus       209 ~~~~~~~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Sm~~D~~~~r~tEi~~  287 (341)
T PRK08229        209 RSYRRCLALAQREALRVLKAAGIRPARLTPLPPAWIPRLLRLPDPLFRRLAGRMLAIDPL-ARSSMSDDLAAGRATEIDW  287 (341)
T ss_pred             chHHHHHHHHHHHHHHHHHHcCCCccccCCCChhhhhhhhcCChHHHHHHHHHhhccCCc-cCchHHHHHHcCCcchHHH
Confidence                   3789999999999999865433222111        00    00001111111 1356899999         


Q ss_pred             ---HHHHHHHHcCCchhhhHHH
Q 011654          279 ---NLVYICECNGLTEVANYWK  297 (480)
Q Consensus       279 ---~l~~~a~~~g~~~~~~~~~  297 (480)
                         ++++.|+++|++  .++.+
T Consensus       288 i~G~i~~~a~~~gv~--~P~~~  307 (341)
T PRK08229        288 INGEIVRLAGRLGAP--APVNA  307 (341)
T ss_pred             HhhHHHHHHHHcCCC--CcHHH
Confidence               799999999998  55444

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.74  E-value=9.3e-16  Score=141.59  Aligned_cols=209  Identities=15%  Similarity=0.187  Sum_probs=155.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH---hcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH---VAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a---~~~   78 (480)
                      |+|+.||||.||..|..+|.+.  ||+|++||+|++.++.+....                   .+.++++++.   +..
T Consensus         1 M~iGmiGLGrMG~n~v~rl~~~--ghdvV~yD~n~~av~~~~~~g-------------------a~~a~sl~el~~~L~~   59 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRLLDG--GHDVVGYDVNQTAVEELKDEG-------------------ATGAASLDELVAKLSA   59 (300)
T ss_pred             CcceeeccchhhHHHHHHHHhC--CCeEEEEcCCHHHHHHHHhcC-------------------CccccCHHHHHHhcCC
Confidence            8999999999999999999998  999999999999999988631                   2233344332   356


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      ..+|.++||...              ...++++++++.|.++.+||+-...-...+.+-.+.+++.+    ++++.+-..
T Consensus        60 pr~vWlMvPag~--------------it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kg----i~flD~GTS  121 (300)
T COG1023          60 PRIVWLMVPAGD--------------ITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKG----IHFLDVGTS  121 (300)
T ss_pred             CcEEEEEccCCC--------------chHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcC----CeEEeccCC
Confidence            689999998531              24688999999999999999753322222222233455543    333443332


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCC--eEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPED--RIITTNLWSAELSKLAANAFLAQRISSVNAMSAL  236 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~--~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l  236 (480)
                      .+.-.+    ...-.+||||+     +++.+++.++|..+.++.  -.+++..+++..+|+++|-.-.-.++.++|-..+
T Consensus       122 GG~~G~----~~G~~lMiGG~-----~~a~~~~~pif~~lA~ge~Gyl~~Gp~GsGHfvKMVHNGIEYGmM~a~aEGfel  192 (300)
T COG1023         122 GGVWGA----ERGYCLMIGGD-----EEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFEL  192 (300)
T ss_pred             CCchhh----hcCceEEecCc-----HHHHHHHHHHHHhhCcCcCccccccCCCcchhHHHHhccHHHHHHHHHHHHHHH
Confidence            222112    22236899996     899999999999987532  3456788999999999999999999999999999


Q ss_pred             HHHh--CCCHHHHHHHhcCCCCCC
Q 011654          237 CEAT--GADVTQVSHAIGKDTRIG  258 (480)
Q Consensus       237 ~~~~--Gid~~~v~~~~~~~~~~~  258 (480)
                      .++.  ..|.++|.++.+..+-|+
T Consensus       193 L~~s~fD~D~~~VA~vW~hGSVIr  216 (300)
T COG1023         193 LKNSPFDYDLEAVAEVWNHGSVIR  216 (300)
T ss_pred             HHhCCCCCCHHHHHHHHhCcchHH
Confidence            8885  688999999999887553

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.73  E-value=1.4e-15  Score=153.61  Aligned_cols=215  Identities=17%  Similarity=0.209  Sum_probs=146.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~a   79 (480)
                      |||+|||+|.||+.+|..|+++  |++|++|+++++.++.+++.+ ...+.++..      ...++++++++.+++ .++
T Consensus         1 MkI~IiGaGa~G~ala~~L~~~--g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~   72 (326)
T PRK14620          1 MKISILGAGSFGTAIAIALSSK--KISVNLWGRNHTTFESINTKRKNLKYLPTCH------LPDNISVKSAIDEVLSDNA   72 (326)
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCeEEEEecCHHHHHHHHHcCCCcccCCCCc------CCCCeEEeCCHHHHHhCCC
Confidence            7999999999999999999998  999999999999999998743 221122211      123577888888766 589


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHh-hCCCCCEEE-EecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAN-VSNSNKIVV-EKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      |+||+|||+.               .+.++++++.+ ++.+++.|+ ....+...+.....+.+.+......+.+..+|.
T Consensus        73 Dliiiavks~---------------~~~~~l~~l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~  137 (326)
T PRK14620         73 TCIILAVPTQ---------------QLRTICQQLQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPS  137 (326)
T ss_pred             CEEEEEeCHH---------------HHHHHHHHHHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCc
Confidence            9999999852               36788899988 877776554 334443332222223333322112344556776


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeE-EeCChhHHHHhhhHHhH---------------
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRI-ITTNLWSAELSKLAANA---------------  221 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v-~~~~~~~ae~~Kl~~N~---------------  221 (480)
                      +..+...    ..+..+++++.    +.+..+.+.++|+.-.  .++ ...|+...+|.|++.|+               
T Consensus       138 ~a~~~~~----~~~~~~~~~~~----~~~~~~~l~~~l~~~~--~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~  207 (326)
T PRK14620        138 FAKEIAE----KLPCSIVLAGQ----NETLGSSLISKLSNEN--LKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGN  207 (326)
T ss_pred             HHHHHHc----CCCcEEEEecC----CHHHHHHHHHHHCCCC--eEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCc
Confidence            5443221    13345666665    3556777888887642  244 44699999999998775               


Q ss_pred             --HHHHHHHHHHHHHHHHHHhCC--CHHHHHH
Q 011654          222 --FLAQRISSVNAMSALCEATGA--DVTQVSH  249 (480)
Q Consensus       222 --~~~~~ia~~nE~~~l~~~~Gi--d~~~v~~  249 (480)
                        ..++....++|+..+++++|.  +.++++.
T Consensus       208 n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~g  239 (326)
T PRK14620        208 NAHAAVITKGMNEIKTLYSAKNGSIDLNTLIG  239 (326)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCCcchhhc
Confidence              344556789999999999987  7788854

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=99.73  E-value=3.1e-16  Score=166.52  Aligned_cols=207  Identities=20%  Similarity=0.213  Sum_probs=142.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC-------CCCCCCCChHHHHHhhcCCCEEEecCHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD-------QLPIYEPGLEDVVTQCRGRNLFFSTDIE   73 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-------~~~~~e~~l~~l~~~~~~~~l~~t~d~~   73 (480)
                      ||||+|||+|.||.+||..|+++  |++|++||+++++.+.+.+.       ...+...   .+   ...++++++++++
T Consensus         4 i~kIavIG~G~MG~~iA~~la~~--G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~---~~---~~~g~i~~~~~~~   75 (495)
T PRK07531          4 IMKAACIGGGVIGGGWAARFLLA--GIDVAVFDPHPEAERIIGEVLANAERAYAMLTDA---PL---PPEGRLTFCASLA   75 (495)
T ss_pred             cCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccc---hh---hhhhceEeeCCHH
Confidence            58999999999999999999998  99999999999988765421       0000000   00   0124578899998


Q ss_pred             HHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEe
Q 011654           74 KHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQIL  153 (480)
Q Consensus        74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~  153 (480)
                      +++++||+|++|||+..           ++  .+.++.++.+.++++. ||.+||..+..+ .+.+.+...    .-.+.
T Consensus        76 ea~~~aD~Vieavpe~~-----------~v--k~~l~~~l~~~~~~~~-iI~SsTsgi~~s-~l~~~~~~~----~r~~~  136 (495)
T PRK07531         76 EAVAGADWIQESVPERL-----------DL--KRRVLAEIDAAARPDA-LIGSSTSGFLPS-DLQEGMTHP----ERLFV  136 (495)
T ss_pred             HHhcCCCEEEEcCcCCH-----------HH--HHHHHHHHHhhCCCCc-EEEEcCCCCCHH-HHHhhcCCc----ceEEE
Confidence            88999999999998642           22  2456677888887776 556777765543 444444332    12344


Q ss_pred             eCC---ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHH-HHH
Q 011654          154 SNP---EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQR-ISS  229 (480)
Q Consensus       154 ~~P---e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~-ia~  229 (480)
                      .+|   ....+      +    ..+++++.+  +++.++++.++|+.+++ .+++..        |.+.|....-. .++
T Consensus       137 ~hP~nP~~~~~------L----vevv~g~~t--~~e~~~~~~~~~~~lG~-~~v~~~--------k~~~gfi~nrl~~a~  195 (495)
T PRK07531        137 AHPYNPVYLLP------L----VELVGGGKT--SPETIRRAKEILREIGM-KPVHIA--------KEIDAFVGDRLLEAL  195 (495)
T ss_pred             EecCCCcccCc------e----EEEcCCCCC--CHHHHHHHHHHHHHcCC-EEEeec--------CCCcchhHHHHHHHH
Confidence            454   32221      1    235666533  68999999999999863 344443        45555544444 455


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHhcCCC
Q 011654          230 VNAMSALCEATGADVTQVSHAIGKDT  255 (480)
Q Consensus       230 ~nE~~~l~~~~Gid~~~v~~~~~~~~  255 (480)
                      ++|+..++++.|+|++++.++++..+
T Consensus       196 ~~EA~~L~~~g~~s~~~id~~~~~g~  221 (495)
T PRK07531        196 WREALWLVKDGIATTEEIDDVIRYSF  221 (495)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHhhcc
Confidence            79999999999999999999998775

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.72  E-value=1.4e-16  Score=158.17  Aligned_cols=214  Identities=20%  Similarity=0.266  Sum_probs=145.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChH-----HHHHhhcCCCEEEecCHHHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLE-----DVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~-----~l~~~~~~~~l~~t~d~~~a   75 (480)
                      |.||+|||+|.||.++|..|+++  |++|++||++++.++.+++...++.+++.+     +--.+....+++++++++++
T Consensus         1 ~~~V~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~   78 (288)
T PRK09260          1 IEKLVVVGAGVMGRGIAYVFAVS--GFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAA   78 (288)
T ss_pred             CcEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHh
Confidence            57999999999999999999998  999999999999998876532111111100     00000012357888999888


Q ss_pred             hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEE-EEecCCccchHHHHHHHHHhcCCCCceeEee
Q 011654           76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIV-VEKSTVPVKTAEAIEKILTHNSREIKYQILS  154 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v~~  154 (480)
                      +++||+||+|+|++.             ...+.++.++.+++++++++ +++||+++....   +.+.....-...+.. 
T Consensus        79 ~~~aD~Vi~avpe~~-------------~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~---~~~~~~~r~~g~h~~-  141 (288)
T PRK09260         79 VADADLVIEAVPEKL-------------ELKKAVFETADAHAPAECYIATNTSTMSPTEIA---SFTKRPERVIAMHFF-  141 (288)
T ss_pred             hcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHH---hhcCCcccEEEEecC-
Confidence            999999999999642             22356677888889999876 688999886533   323221100011222 


Q ss_pred             CCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHH
Q 011654          155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMS  234 (480)
Q Consensus       155 ~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~  234 (480)
                      +|....+      +    ..|+++..+  ++++++++++++..+++ .++++.+     ...++.|   .+..+++||..
T Consensus       142 ~Pv~~~~------L----ve~v~g~~t--~~~~~~~~~~~l~~lg~-~~v~v~d-----~~Gf~~n---Rl~~~~~~ea~  200 (288)
T PRK09260        142 NPVHKMK------L----VELIRGLET--SDETVQVAKEVAEQMGK-ETVVVNE-----FPGFVTS---RISALVGNEAF  200 (288)
T ss_pred             CCcccCc------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-eEEEecC-----cccHHHH---HHHHHHHHHHH
Confidence            5653321      1    245666433  68999999999999863 4455543     4456666   45578999999


Q ss_pred             HHHHHhCCCHHHHHHHhcCC
Q 011654          235 ALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       235 ~l~~~~Gid~~~v~~~~~~~  254 (480)
                      .+.+.--.+++++..++...
T Consensus       201 ~~~~~gv~~~~~iD~~~~~g  220 (288)
T PRK09260        201 YMLQEGVATAEDIDKAIRLG  220 (288)
T ss_pred             HHHHcCCCCHHHHHHHHHhC
Confidence            99987667899999887544

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.69  E-value=1.2e-15  Score=152.31  Aligned_cols=211  Identities=19%  Similarity=0.196  Sum_probs=142.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHH-----hhcCCCEEEecCHHHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVT-----QCRGRNLFFSTDIEKH   75 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~-----~~~~~~l~~t~d~~~a   75 (480)
                      |.||+|||+|.||.++|..|+.+  |++|++||++++..+.+.+...    ..++.+.+     ....++++++++++++
T Consensus         7 i~~VaVIGaG~MG~giA~~~a~a--G~~V~l~D~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~~i~~~~~l~~a   80 (321)
T PRK07066          7 IKTFAAIGSGVIGSGWVARALAH--GLDVVAWDPAPGAEAALRANVA----NAWPALERQGLAPGASPARLRFVATIEAC   80 (321)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHH----HHHHHHHHcCCChhhHHhhceecCCHHHH
Confidence            46899999999999999999998  9999999999987765432100    00111110     0012467889999988


Q ss_pred             hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEe--
Q 011654           76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQIL--  153 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~--  153 (480)
                      +++||+|+.|||..           .+++  +..++++.+++++++ |+.+||.+.. ...++..+..-.   .|..+  
T Consensus        81 v~~aDlViEavpE~-----------l~vK--~~lf~~l~~~~~~~a-IlaSnTS~l~-~s~la~~~~~p~---R~~g~Hf  142 (321)
T PRK07066         81 VADADFIQESAPER-----------EALK--LELHERISRAAKPDA-IIASSTSGLL-PTDFYARATHPE---RCVVGHP  142 (321)
T ss_pred             hcCCCEEEECCcCC-----------HHHH--HHHHHHHHHhCCCCe-EEEECCCccC-HHHHHHhcCCcc---cEEEEec
Confidence            99999999999863           3443  677789999999888 5555665332 233433332211   12111  


Q ss_pred             eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHH
Q 011654          154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAM  233 (480)
Q Consensus       154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~  233 (480)
                      ++|.+..|-      .   -|+ .+..  +++++++.+.+++..+++ .++.+..    +...++.|   .+..+++||.
T Consensus       143 fnP~~~~pL------V---EVv-~g~~--T~~e~~~~~~~f~~~lGk-~pV~v~k----d~pGFi~N---Rl~~a~~~EA  202 (321)
T PRK07066        143 FNPVYLLPL------V---EVL-GGER--TAPEAVDAAMGIYRALGM-RPLHVRK----EVPGFIAD---RLLEALWREA  202 (321)
T ss_pred             CCccccCce------E---EEe-CCCC--CCHHHHHHHHHHHHHcCC-EeEecCC----CCccHHHH---HHHHHHHHHH
Confidence            244333321      0   233 4443  379999999999999863 4555521    23456777   5678999999


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCC
Q 011654          234 SALCEATGADVTQVSHAIGKDT  255 (480)
Q Consensus       234 ~~l~~~~Gid~~~v~~~~~~~~  255 (480)
                      ..+.++..++++++..++..++
T Consensus       203 ~~lv~eGvas~edID~a~~~g~  224 (321)
T PRK07066        203 LHLVNEGVATTGEIDDAIRFGA  224 (321)
T ss_pred             HHHHHhCCCCHHHHHHHHHhCC
Confidence            9999998899999999987665

>PRK08507 prephenate dehydrogenase; Validated

Probab=99.68  E-value=1.4e-14  Score=142.70  Aligned_cols=202  Identities=14%  Similarity=0.134  Sum_probs=130.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|||+|.||.++|..|.++  |+  +|++||+++++.+.+.+.                  +....++++.++ .++
T Consensus         1 m~I~iIG~G~mG~sla~~l~~~--g~~~~v~~~d~~~~~~~~~~~~------------------g~~~~~~~~~~~-~~a   59 (275)
T PRK08507          1 MKIGIIGLGLMGGSLGLALKEK--GLISKVYGYDHNELHLKKALEL------------------GLVDEIVSFEEL-KKC   59 (275)
T ss_pred             CEEEEEccCHHHHHHHHHHHhc--CCCCEEEEEcCCHHHHHHHHHC------------------CCCcccCCHHHH-hcC
Confidence            6999999999999999999987  64  899999999988876542                  111123456664 459


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc-
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF-  158 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~-  158 (480)
                      |+||+|||..               .+.+++.++.+ ++++++|++.+++.....+    .+.+... .. ++..+|.. 
T Consensus        60 D~Vilavp~~---------------~~~~~~~~l~~-l~~~~iv~d~gs~k~~i~~----~~~~~~~-~~-~v~~hPmaG  117 (275)
T PRK08507         60 DVIFLAIPVD---------------AIIEILPKLLD-IKENTTIIDLGSTKAKIIE----SVPKHIR-KN-FIAAHPMAG  117 (275)
T ss_pred             CEEEEeCcHH---------------HHHHHHHHHhc-cCCCCEEEECccchHHHHH----HHHHhcC-CC-EEecCCcCc
Confidence            9999999853               24667788888 8889989876665443333    3332211 12 45566743 


Q ss_pred             ---ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHH
Q 011654          159 ---LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSA  235 (480)
Q Consensus       159 ---~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~  235 (480)
                         .++..+..+++....+++. ..+..+++..+.++++|+.++. .+++....+..+++|++++.-..+..++++-+. 
T Consensus       118 ~e~~Gp~~a~~~l~~g~~~il~-~~~~~~~~~~~~v~~l~~~~G~-~~~~~~~~~hD~~~a~vs~lph~~a~~l~~~~~-  194 (275)
T PRK08507        118 TENSGPKAAIKGLYEGKVVVLC-DVEKSGEKHQERAKEIFSGLGM-RIVYMDAKEHDLHAAYISHLPHIISFALANTVL-  194 (275)
T ss_pred             CchhhHHhccHHHhCCCeEEEe-cCCCCCHHHHHHHHHHHHHhCC-EEEEeCHHHHHHHHHHHhHHHHHHHHHHHHHHH-
Confidence               3455554444443233332 2222357788999999999852 334445567789999999987755555443331 


Q ss_pred             HHHHhCCCHHHHHHHhcC
Q 011654          236 LCEATGADVTQVSHAIGK  253 (480)
Q Consensus       236 l~~~~Gid~~~v~~~~~~  253 (480)
                          .+.|..++...++.
T Consensus       195 ----~~~~~~~~~~~~~~  208 (275)
T PRK08507        195 ----KEEDERNIFDLAGG  208 (275)
T ss_pred             ----hcCChHHHHhhccc
Confidence                25566665555543

>PLN02712 arogenate dehydrogenase

Probab=99.68  E-value=3.4e-13  Score=147.22  Aligned_cols=166  Identities=14%  Similarity=0.097  Sum_probs=104.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~aD   80 (480)
                      |||+|||+|.||..+|..|.+.  |++|++||++... +...+                   -++..++++++.+ .++|
T Consensus        53 ~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~-~~A~~-------------------~Gv~~~~d~~e~~~~~aD  110 (667)
T PLN02712         53 LKIAIIGFGNYGQFLAKTLISQ--GHTVLAHSRSDHS-LAARS-------------------LGVSFFLDPHDLCERHPD  110 (667)
T ss_pred             CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHH-HHHHH-------------------cCCEEeCCHHHHhhcCCC
Confidence            7899999999999999999988  8999999998554 22221                   1234566777744 5699


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHH-hhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA-NVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~-~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      +||+|||.               ..+.++++++. ++++++++|++.+++.....+.+.+.+.+   +.. ++..+|-+.
T Consensus       111 vViLavP~---------------~~~~~vl~~l~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~---~~~-~v~~HPMaG  171 (667)
T PLN02712        111 VILLCTSI---------------ISTENVLKSLPLQRLKRNTLFVDVLSVKEFAKNLLLDYLPE---DFD-IICSHPMFG  171 (667)
T ss_pred             EEEEcCCH---------------HHHHHHHHhhhhhcCCCCeEEEECCCCcHHHHHHHHHhcCC---CCe-EEeeCCcCC
Confidence            99999983               23567777775 57888999998876654433444444322   222 567788664


Q ss_pred             cccccccccCCCCeEEEEe--CCCcchHHHHHHHHHHHhccCCCCeEEeCChhH
Q 011654          160 AEGTAIQDLFNPDRVLIGG--RETPEGQKAIQALKDVYAHWVPEDRIITTNLWS  211 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~--~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~  211 (480)
                      .+. ...++.....++.+.  .++....+.++.+.++|+.++  .+++.++++.
T Consensus       172 ~e~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lG--a~v~~ms~ee  222 (667)
T PLN02712        172 PQS-AKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREG--CKMVEMSCTE  222 (667)
T ss_pred             Ccc-ccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcC--CEEEEeCHHH
Confidence            431 111111112222221  111112345677789999884  5777777654

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=99.67  E-value=1.4e-14  Score=143.11  Aligned_cols=186  Identities=15%  Similarity=0.123  Sum_probs=129.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCE-EEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNL-FFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l-~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|.||.++|..|+++  |++|++||++++..+.+.+.                  +.+ ..+++. +++++||
T Consensus         1 m~I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~------------------g~~~~~~~~~-~~~~~aD   59 (279)
T PRK07417          1 MKIGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIER------------------GLVDEASTDL-SLLKDCD   59 (279)
T ss_pred             CeEEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHC------------------CCcccccCCH-hHhcCCC
Confidence            7999999999999999999998  99999999999988877642                  111 133444 3578999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc--
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF--  158 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~--  158 (480)
                      +||+|+|..               .+.++++++.++++++++|++.+++.+...+.+.+...      . ++..+|-.  
T Consensus        60 lVilavp~~---------------~~~~~~~~l~~~l~~~~ii~d~~Svk~~~~~~~~~~~~------~-~v~~HPm~G~  117 (279)
T PRK07417         60 LVILALPIG---------------LLLPPSEQLIPALPPEAIVTDVGSVKAPIVEAWEKLHP------R-FVGSHPMAGT  117 (279)
T ss_pred             EEEEcCCHH---------------HHHHHHHHHHHhCCCCcEEEeCcchHHHHHHHHHHhhC------C-ceeeCCcCCC
Confidence            999999842               34567788888888899998888777655444332211      1 34445643  


Q ss_pred             --ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeE-EeCChhHHHHhhhHHhHHHHHHHHHHHHH
Q 011654          159 --LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRI-ITTNLWSAELSKLAANAFLAQRISSVNAM  233 (480)
Q Consensus       159 --~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v-~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~  233 (480)
                        .+...+..+++....+++ .+.+..+++..+.++++++.++  ..+ +....+..+.+++++|....+..++++.+
T Consensus       118 ~~~g~~~a~~~lf~g~~~~l-~p~~~~~~~~~~~v~~l~~~lG--~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~  192 (279)
T PRK07417        118 AESGVEAGQRGLFKNRPWVL-TPTENTDLNALAIVEELAVSLG--SKIYTADPEEHDRAVALISHLPVMVSAALIQTC  192 (279)
T ss_pred             CcchHHHhhHHHhCCCcEEE-ccCCCCCHHHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHcchHHHHHHHHHHHH
Confidence              333334444444333333 2333446788999999999985  344 45556789999999998776666665544

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=99.66  E-value=6.9e-15  Score=156.18  Aligned_cols=203  Identities=18%  Similarity=0.218  Sum_probs=141.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH------------CCCCCCCCCChHHHHHhhcCCCEEE
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN------------GDQLPIYEPGLEDVVTQCRGRNLFF   68 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~------------~~~~~~~e~~l~~l~~~~~~~~l~~   68 (480)
                      |.||+|||+|.||.+||.+|+.+  |++|++||++++.++...            +|.  +.+...+..     ..+++.
T Consensus         7 i~~V~VIGaG~MG~gIA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~--~~~~~~~~~-----~~~i~~   77 (507)
T PRK08268          7 IATVAVIGAGAMGAGIAQVAAQA--GHTVLLYDARAGAAAAARDGIAARLAKLVEKGK--LTAEQADAA-----LARLRP   77 (507)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCC--CCHHHHHHH-----HhCeEE
Confidence            35899999999999999999998  999999999999888742            221  111111111     246889


Q ss_pred             ecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEE-EEecCCccchHHHHHHHHHhcCC-
Q 011654           69 STDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIV-VEKSTVPVKTAEAIEKILTHNSR-  146 (480)
Q Consensus        69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~-  146 (480)
                      ++++++ +.+||+||.|||+..           +++  +.++.++...+++++++ +++||+++.   .++..+..... 
T Consensus        78 ~~~~~~-~~~aDlViEav~E~~-----------~vK--~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~  140 (507)
T PRK08268         78 VEALAD-LADCDLVVEAIVERL-----------DVK--QALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERV  140 (507)
T ss_pred             eCCHHH-hCCCCEEEEcCcccH-----------HHH--HHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccE
Confidence            999976 789999999998643           222  45567788888889988 578999885   23333322110 


Q ss_pred             -CCceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCC-hhHHHHhhhHHhHHHH
Q 011654          147 -EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTN-LWSAELSKLAANAFLA  224 (480)
Q Consensus       147 -g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~  224 (480)
                       |..|   ++|....+      +    ..|+++..+  ++++++.+.+++..+.+ .++++.+ ++      ++.|.+. 
T Consensus       141 ~G~hf---f~Pa~v~~------L----vEvv~g~~T--s~~~~~~~~~l~~~lgk-~pv~v~d~pG------fi~Nrll-  197 (507)
T PRK08268        141 AGLHF---FNPVPLMK------L----VEVVSGLAT--DPAVADALYALARAWGK-TPVRAKDTPG------FIVNRAA-  197 (507)
T ss_pred             EEEee---cCCcccCe------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-ceEEecCCCC------hHHHHHH-
Confidence             1111   23332221      1    235665433  68999999999999874 5666665 34      5666444 


Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          225 QRISSVNAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       225 ~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                        ..+++|...++++.++|++++.+++...
T Consensus       198 --~~~~~Ea~~l~~~g~~~~~~iD~al~~~  225 (507)
T PRK08268        198 --RPYYTEALRVLEEGVADPATIDAILREA  225 (507)
T ss_pred             --HHHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence              4699999999999999999999998654

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=99.65  E-value=2.2e-14  Score=143.34  Aligned_cols=212  Identities=18%  Similarity=0.181  Sum_probs=140.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||..+|..|+++  |++|+++++ +++++.+++....+.+++.+..      -....+++.+++...+|+
T Consensus         1 mkI~IiG~G~iG~~~a~~L~~~--g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~   71 (305)
T PRK12921          1 MRIAVVGAGAVGGTFGGRLLEA--GRDVTFLVR-PKRAKALRERGLVIRSDHGDAV------VPGPVITDPEELTGPFDL   71 (305)
T ss_pred             CeEEEECCCHHHHHHHHHHHHC--CCceEEEec-HHHHHHHHhCCeEEEeCCCeEE------ecceeecCHHHccCCCCE
Confidence            7999999999999999999998  999999999 8888888865433322211100      012245666665689999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc-cc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF-LA  160 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~-~~  160 (480)
                      ||+|||++.               +.++++.+.+.+.++++|+.. +...+..+.+.+.+.+..  .-..+.+.+.+ ..
T Consensus        72 vilavk~~~---------------~~~~~~~l~~~~~~~~~ii~~-~nG~~~~~~l~~~~~~~~--v~~g~~~~~~~~~~  133 (305)
T PRK12921         72 VILAVKAYQ---------------LDAAIPDLKPLVGEDTVIIPL-QNGIGQLEQLEPYFGRER--VLGGVVFISAQLNG  133 (305)
T ss_pred             EEEEecccC---------------HHHHHHHHHhhcCCCCEEEEe-eCCCChHHHHHHhCCccc--EEEEEEEEEEEECC
Confidence            999998642               467788888888887766643 334455555655553321  01123333333 34


Q ss_pred             ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHH------------------
Q 011654          161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAF------------------  222 (480)
Q Consensus       161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~------------------  222 (480)
                      +|.....  .+.++.+|..+.. ..+..+.+.++|..... ......|+..++|.|++.|+.                  
T Consensus       134 ~g~v~~~--~~~~~~iG~~~~~-~~~~~~~l~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~  209 (305)
T PRK12921        134 DGVVVQR--ADHRLTFGEIPGQ-RSERTRAVRDALAGARL-EVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSR  209 (305)
T ss_pred             CeEEEEc--CCCcEEEcCCCCC-cCHHHHHHHHHHHhCCC-CceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhC
Confidence            5554333  3446778864321 23456667777776532 234567999999999998853                  


Q ss_pred             ---HHHHHHHHHHHHHHHHHhCCCH
Q 011654          223 ---LAQRISSVNAMSALCEATGADV  244 (480)
Q Consensus       223 ---~~~~ia~~nE~~~l~~~~Gid~  244 (480)
                         +.+..+.++|+..++++.|+++
T Consensus       210 ~~~~~l~~~~~~E~~~v~~a~G~~~  234 (305)
T PRK12921        210 PGGRDLARALLRECLAVARAEGAPL  234 (305)
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence               3456678999999999999863

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=99.65  E-value=5.7e-16  Score=139.73  Aligned_cols=150  Identities=24%  Similarity=0.341  Sum_probs=110.1

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ||+|||+|.||+++|..|+++  |++|++|.++++.++.+++.+ ++.+.++..      ...++.+++|++++++++|+
T Consensus         1 KI~ViGaG~~G~AlA~~la~~--g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~------l~~~i~~t~dl~~a~~~ad~   72 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADN--GHEVTLWGRDEEQIEEINETRQNPKYLPGIK------LPENIKATTDLEEALEDADI   72 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHC--TEEEEEETSCHHHHHHHHHHTSETTTSTTSB------EETTEEEESSHHHHHTT-SE
T ss_pred             CEEEECcCHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhCCCCCCCCCcc------cCcccccccCHHHHhCcccE
Confidence            899999999999999999999  999999999999999999743 344444421      13468899999999999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-CccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      |+++||+.               .++++++++.++++++++++..+. +.+++...+.+++++......+.++++|.+..
T Consensus        73 IiiavPs~---------------~~~~~~~~l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~  137 (157)
T PF01210_consen   73 IIIAVPSQ---------------AHREVLEQLAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAE  137 (157)
T ss_dssp             EEE-S-GG---------------GHHHHHHHHTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HH
T ss_pred             EEecccHH---------------HHHHHHHHHhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHH
Confidence            99999863               257899999999999998887664 45666666777776654323388899998877


Q ss_pred             ccccccccCCCCeEEEEeC
Q 011654          161 EGTAIQDLFNPDRVLIGGR  179 (480)
Q Consensus       161 ~G~a~~~~~~~~~vviG~~  179 (480)
                      +-..    ..|..+++++.
T Consensus       138 Ei~~----~~pt~~~~as~  152 (157)
T PF01210_consen  138 EIAE----GKPTAVVIASK  152 (157)
T ss_dssp             HHHT----T--EEEEEEES
T ss_pred             HHHc----CCCeEEEEEec
Confidence            6332    34556778876

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.64  E-value=2e-14  Score=142.55  Aligned_cols=213  Identities=16%  Similarity=0.131  Sum_probs=139.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC---CCCCCC--Ch--HHHHHhhcCCCEEEecCHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ---LPIYEP--GL--EDVVTQCRGRNLFFSTDIE   73 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~---~~~~e~--~l--~~l~~~~~~~~l~~t~d~~   73 (480)
                      |+||+|||+|.||.++|..|+.+  |++|++||++++.++.+++..   .+..++  .+  ++... ....++++++|++
T Consensus         3 ~~kIaViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~d~~   79 (287)
T PRK08293          3 IKNVTVAGAGVLGSQIAFQTAFH--GFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAE-AALNRITLTTDLA   79 (287)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHH-HHHcCeEEeCCHH
Confidence            47999999999999999999998  999999999999887765421   000000  00  00000 0124788999999


Q ss_pred             HHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEE-EEecCCccchHHHHHHHHHhcCCCCceeE
Q 011654           74 KHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIV-VEKSTVPVKTAEAIEKILTHNSREIKYQI  152 (480)
Q Consensus        74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~~v  152 (480)
                      +++++||+||+|+|+..             ...+++++++.+.++++++| .++||.++..   +.+.+...   .. ++
T Consensus        80 ~a~~~aDlVieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~---~~~~~~~~---~r-~v  139 (287)
T PRK08293         80 EAVKDADLVIEAVPEDP-------------EIKGDFYEELAKVAPEKTIFATNSSTLLPSQ---FAEATGRP---EK-FL  139 (287)
T ss_pred             HHhcCCCEEEEeccCCH-------------HHHHHHHHHHHhhCCCCCEEEECcccCCHHH---HHhhcCCc---cc-EE
Confidence            88999999999998642             33577788899999988887 4556665532   22222211   11 23


Q ss_pred             eeCCccccccccccccCCCCe-EEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHH
Q 011654          153 LSNPEFLAEGTAIQDLFNPDR-VLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVN  231 (480)
Q Consensus       153 ~~~Pe~~~~G~a~~~~~~~~~-vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n  231 (480)
                      ..+|  ..|.      ...+. .++.+.  .+++++++.+.+++..+++ .++.+..    +...++.|   .+..+++|
T Consensus       140 g~Hf--~~p~------~~~~lvevv~~~--~t~~~~~~~~~~~~~~~Gk-~pv~v~~----d~pgfi~n---Ri~~~~~~  201 (287)
T PRK08293        140 ALHF--ANEI------WKNNTAEIMGHP--GTDPEVFDTVVAFAKAIGM-VPIVLKK----EQPGYILN---SLLVPFLS  201 (287)
T ss_pred             EEcC--CCCC------CcCCeEEEeCCC--CCCHHHHHHHHHHHHHcCC-eEEEecC----CCCCHhHH---HHHHHHHH
Confidence            3333  1111      11111 233332  3478999999999999863 3444431    23345556   45578999


Q ss_pred             HHHHHHHHhCCCHHHHHHHhcCC
Q 011654          232 AMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       232 E~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                      |...+.++..++++++..++...
T Consensus       202 ea~~l~~~g~a~~~~iD~a~~~~  224 (287)
T PRK08293        202 AALALWAKGVADPETIDKTWMIA  224 (287)
T ss_pred             HHHHHHHcCCCCHHHHHHHHHhc
Confidence            99999998779999999987644

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=99.64  E-value=1.4e-14  Score=153.42  Aligned_cols=206  Identities=17%  Similarity=0.212  Sum_probs=139.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEec
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFST   70 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t~   70 (480)
                      +.||+|||+|.||.+||.+|+++  ||+|++||++++.++...+.          .-.+.+...+..     ..+++.++
T Consensus         5 ~~kV~VIGaG~MG~gIA~~la~a--G~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~-----~~~i~~~~   77 (503)
T TIGR02279         5 VVTVAVIGAGAMGAGIAQVAASA--GHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERT-----LKRLIPVT   77 (503)
T ss_pred             ccEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH-----HhccEEeC
Confidence            47899999999999999999998  99999999999988764321          000000111111     24678899


Q ss_pred             CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCC--C
Q 011654           71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSR--E  147 (480)
Q Consensus        71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g  147 (480)
                      ++++ +++||+||.|||+..           ++  -+.++.++.+.+++++++. ++||+++.   .++..+.....  |
T Consensus        78 ~~~~-l~~aDlVIEav~E~~-----------~v--K~~vf~~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G  140 (503)
T TIGR02279        78 DLHA-LADAGLVIEAIVENL-----------EV--KKALFAQLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAG  140 (503)
T ss_pred             CHHH-hCCCCEEEEcCcCcH-----------HH--HHHHHHHHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEE
Confidence            9976 789999999998642           22  3556778888888888764 45566653   23333322111  2


Q ss_pred             CceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654          148 IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI  227 (480)
Q Consensus       148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i  227 (480)
                      ..|   ++|....+      +    ..|+++..|  ++++++.+.+++..+++ .++++.+...     ++.|.+.   .
T Consensus       141 ~HF---f~Papv~~------L----vEvv~g~~T--s~e~~~~~~~l~~~lgk-~pv~v~d~pG-----fi~Nrl~---~  196 (503)
T TIGR02279       141 LHF---FNPAPVMA------L----VEVVSGLAT--AAEVAEQLYETALAWGK-QPVHCHSTPG-----FIVNRVA---R  196 (503)
T ss_pred             Eec---cCccccCc------e----EEEeCCCCC--CHHHHHHHHHHHHHcCC-eeeEeCCCCC-----cHHHHHH---H
Confidence            222   23332221      1    235676533  68999999999999874 4566665322     3556433   5


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          228 SSVNAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       228 a~~nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                      ++++|...+.++.+++++++.+++...
T Consensus       197 ~~~~EA~~l~e~g~a~~~~ID~al~~~  223 (503)
T TIGR02279       197 PYYAEALRALEEQVAAPAVLDAALRDG  223 (503)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence            799999999999999999999999754

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.63  E-value=9.7e-14  Score=139.25  Aligned_cols=210  Identities=14%  Similarity=0.180  Sum_probs=135.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC---CCC-CCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ---LPI-YEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~---~~~-~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      |+||+|||+|.||.++|..|+++  |++|++||++++.++.+++..   ... .+.+....    ..+++++++++++++
T Consensus         4 ~~~I~vIGaG~mG~~iA~~l~~~--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~   77 (311)
T PRK06130          4 IQNLAIIGAGTMGSGIAALFARK--GLQVVLIDVMEGALERARGVIERALGVYAPLGIASA----GMGRIRMEAGLAAAV   77 (311)
T ss_pred             ccEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHH----HhhceEEeCCHHHHh
Confidence            47899999999999999999998  999999999999988876520   000 00011000    013577888888888


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCC
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNP  156 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P  156 (480)
                      ++||+||+|||...             .....++.++.+.++++++|+ ++|.... ...+.+.+....   . .+..+|
T Consensus        78 ~~aDlVi~av~~~~-------------~~~~~v~~~l~~~~~~~~ii~-s~tsg~~-~~~l~~~~~~~~---~-~ig~h~  138 (311)
T PRK06130         78 SGADLVIEAVPEKL-------------ELKRDVFARLDGLCDPDTIFA-TNTSGLP-ITAIAQAVTRPE---R-FVGTHF  138 (311)
T ss_pred             ccCCEEEEeccCcH-------------HHHHHHHHHHHHhCCCCcEEE-ECCCCCC-HHHHHhhcCCcc---c-EEEEcc
Confidence            99999999998642             123566777877777766554 4444333 334544443211   1 222232


Q ss_pred             ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeC-C-hhHHHHhhhHHhHHHHHHHHHHHHHH
Q 011654          157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITT-N-LWSAELSKLAANAFLAQRISSVNAMS  234 (480)
Q Consensus       157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~-~~~ae~~Kl~~N~~~~~~ia~~nE~~  234 (480)
                      .  .+.... .+    ..++.+.  ..+++.++.+.++++.++. ..+... + ++.     +++|.    ..++++|..
T Consensus       139 ~--~p~~~~-~l----~~i~~g~--~t~~~~~~~v~~l~~~~G~-~~v~~~~d~~G~-----i~nr~----~~~~~~Ea~  199 (311)
T PRK06130        139 F--TPADVI-PL----VEVVRGD--KTSPQTVATTMALLRSIGK-RPVLVKKDIPGF-----IANRI----QHALAREAI  199 (311)
T ss_pred             C--CCCccC-ce----EEEeCCC--CCCHHHHHHHHHHHHHcCC-EEEEEcCCCCCc-----HHHHH----HHHHHHHHH
Confidence            1  111110 01    1233443  2368899999999999863 344443 3 222     55554    357899999


Q ss_pred             HHHHHhCCCHHHHHHHhcCC
Q 011654          235 ALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       235 ~l~~~~Gid~~~v~~~~~~~  254 (480)
                      .++++.|+|++++.+++...
T Consensus       200 ~l~~~g~~~~~~id~~~~~~  219 (311)
T PRK06130        200 SLLEKGVASAEDIDEVVKWS  219 (311)
T ss_pred             HHHHcCCCCHHHHHHHHHhc
Confidence            99999999999999999754

>PRK08655 prephenate dehydrogenase; Provisional

Probab=99.62  E-value=3.5e-13  Score=140.89  Aligned_cols=202  Identities=18%  Similarity=0.210  Sum_probs=140.1

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+||| +|.||.++|..|..+  |++|++||+++++.+.+...                  .++.++++..+++.++|
T Consensus         1 MkI~IIGG~G~mG~slA~~L~~~--G~~V~v~~r~~~~~~~~a~~------------------~gv~~~~~~~e~~~~aD   60 (437)
T PRK08655          1 MKISIIGGTGGLGKWFARFLKEK--GFEVIVTGRDPKKGKEVAKE------------------LGVEYANDNIDAAKDAD   60 (437)
T ss_pred             CEEEEEecCCHHHHHHHHHHHHC--CCEEEEEECChHHHHHHHHH------------------cCCeeccCHHHHhccCC
Confidence            7999997 899999999999998  89999999998876554431                  12455677778889999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      +||+|+|..               .+.++++++.+.++++++|++.+++.+...+.+.+.+..   +.. ++..+|.+. 
T Consensus        61 vVIlavp~~---------------~~~~vl~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~~---~~~-~V~~HPmaG-  120 (437)
T PRK08655         61 IVIISVPIN---------------VTEDVIKEVAPHVKEGSLLMDVTSVKERPVEAMEEYAPE---GVE-ILPTHPMFG-  120 (437)
T ss_pred             EEEEecCHH---------------HHHHHHHHHHhhCCCCCEEEEcccccHHHHHHHHHhcCC---CCE-EEEcCCCCC-
Confidence            999999842               346778889999999999999888776666666655432   122 355567653 


Q ss_pred             ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHh
Q 011654          161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT  240 (480)
Q Consensus       161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~  240 (480)
                      +...   .+....+++ .+....+++..+.++++|+.++  .+++.++++  +--|++.++....++.+...+..+ .++
T Consensus       121 p~~~---~~~g~~~il-~p~~~~~~~~~~~v~~ll~~~G--~~v~~~~~e--~HD~~~a~vs~lph~~a~al~~~l-~~~  191 (437)
T PRK08655        121 PRTP---SLKGQVVIL-TPTEKRSNPWFDKVKNFLEKEG--ARVIVTSPE--EHDRIMSVVQGLTHFAYISIASTL-KRL  191 (437)
T ss_pred             CCCc---ccCCCEEEE-ecCCCCCHHHHHHHHHHHHHcC--CEEEECCHH--HHHHHHHHHHHHHHHHHHHHHHHH-HHc
Confidence            3221   122223333 2222235778899999999874  467776655  556777776666666666554444 667


Q ss_pred             CCCHHHHHHHhc
Q 011654          241 GADVTQVSHAIG  252 (480)
Q Consensus       241 Gid~~~v~~~~~  252 (480)
                      |.|..+....++
T Consensus       192 g~~~~~~~~~a~  203 (437)
T PRK08655        192 GVDIKESRKFAS  203 (437)
T ss_pred             CCCHHHHHhhcC
Confidence            888877655444

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.62  E-value=5.1e-14  Score=140.01  Aligned_cols=208  Identities=17%  Similarity=0.190  Sum_probs=134.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEec
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFST   70 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t~   70 (480)
                      ++||+|||+|.||.++|..|+.+  |++|++||++++.++.+.+.          ...+.+...+..     ..++++++
T Consensus         4 ~~kI~vIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-----~~~i~~~~   76 (292)
T PRK07530          4 IKKVGVIGAGQMGNGIAHVCALA--GYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAA-----LARISTAT   76 (292)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-----HhCeEeeC
Confidence            36899999999999999999998  99999999999988764321          001111111111     13578888


Q ss_pred             CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCCCCc
Q 011654           71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSREIK  149 (480)
Q Consensus        71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~  149 (480)
                      ++++ +++||+||+|||+..             .....+++++.+.++++++|+ ++||+++.   .+++.+.....-..
T Consensus        77 ~~~~-~~~aD~Vieavpe~~-------------~~k~~~~~~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g  139 (292)
T PRK07530         77 DLED-LADCDLVIEAATEDE-------------TVKRKIFAQLCPVLKPEAILATNTSSISIT---RLASATDRPERFIG  139 (292)
T ss_pred             CHHH-hcCCCEEEEcCcCCH-------------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEE
Confidence            8864 899999999998642             223566788999999998876 55666543   34443322110000


Q ss_pred             eeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHH
Q 011654          150 YQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISS  229 (480)
Q Consensus       150 ~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~  229 (480)
                      .+. +.|....++.         .++.| .  .++++.++.+.++++.+++ .+++..+..    .+++++    +...+
T Consensus       140 ~h~-~~p~~~~~~v---------ei~~g-~--~t~~~~~~~~~~~~~~~gk-~~v~~~d~p----g~i~nR----l~~~~  197 (292)
T PRK07530        140 IHF-MNPVPVMKLV---------ELIRG-I--ATDEATFEAAKEFVTKLGK-TITVAEDFP----AFIVNR----ILLPM  197 (292)
T ss_pred             eec-cCCcccCceE---------EEeCC-C--CCCHHHHHHHHHHHHHcCC-eEEEecCcC----ChHHHH----HHHHH
Confidence            111 2233322221         13333 2  2268999999999999864 455555433    455554    34677


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          230 VNAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       230 ~nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                      +||...+.++.-.+++++..++...
T Consensus       198 ~~ea~~~~~~g~~~~~~iD~~~~~g  222 (292)
T PRK07530        198 INEAIYTLYEGVGSVEAIDTAMKLG  222 (292)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHhC
Confidence            8999988887556899999887533

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.60  E-value=2.4e-13  Score=134.48  Aligned_cols=207  Identities=17%  Similarity=0.203  Sum_probs=135.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh---------hcCCCEEEecC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ---------CRGRNLFFSTD   71 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~---------~~~~~l~~t~d   71 (480)
                      |+||+|||+|+||.++|..|+++  |++|+++|+++++++...+.   + +..++.+.+.         ....+++++++
T Consensus         3 ~~kI~VIG~G~mG~~ia~~la~~--g~~V~~~d~~~~~~~~~~~~---i-~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~   76 (282)
T PRK05808          3 IQKIGVIGAGTMGNGIAQVCAVA--GYDVVMVDISDAAVDRGLAT---I-TKSLDRLVKKGKMTEADKEAALARITGTTD   76 (282)
T ss_pred             ccEEEEEccCHHHHHHHHHHHHC--CCceEEEeCCHHHHHHHHHH---H-HHHHHHHHHcCCCCHHHHHHHHhCeEEeCC
Confidence            46899999999999999999998  99999999999988532210   0 0001111110         00136788889


Q ss_pred             HHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCcee
Q 011654           72 IEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQ  151 (480)
Q Consensus        72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~  151 (480)
                      +++ +++||+||+|+|...             ..-.++++++.++++++++|+ ++|.....+ .+++.+....   . .
T Consensus        77 ~~~-~~~aDlVi~av~e~~-------------~~k~~~~~~l~~~~~~~~il~-s~ts~~~~~-~la~~~~~~~---r-~  136 (282)
T PRK05808         77 LDD-LKDADLVIEAATENM-------------DLKKKIFAQLDEIAKPEAILA-TNTSSLSIT-ELAAATKRPD---K-V  136 (282)
T ss_pred             HHH-hccCCeeeecccccH-------------HHHHHHHHHHHhhCCCCcEEE-ECCCCCCHH-HHHHhhCCCc---c-e
Confidence            865 899999999998422             223578889999999988773 344433333 4544443221   1 2


Q ss_pred             Eee---CCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHH
Q 011654          152 ILS---NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRIS  228 (480)
Q Consensus       152 v~~---~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia  228 (480)
                      +..   .|....++-         .++-| .  .++++..+.+.++++.++. .++.+.+     ...++.|   .+..+
T Consensus       137 ig~h~~~P~~~~~~v---------ev~~g-~--~t~~e~~~~~~~l~~~lGk-~pv~~~d-----~~g~i~~---Ri~~~  195 (282)
T PRK05808        137 IGMHFFNPVPVMKLV---------EIIRG-L--ATSDATHEAVEALAKKIGK-TPVEVKN-----APGFVVN---RILIP  195 (282)
T ss_pred             EEeeccCCcccCccE---------EEeCC-C--CCCHHHHHHHHHHHHHcCC-eeEEecC-----ccChHHH---HHHHH
Confidence            222   333332221         13323 2  2368999999999999864 4455543     3345656   56688


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          229 SVNAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       229 ~~nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                      ++||...+.++.-.+++++..++..+
T Consensus       196 ~~~ea~~~~~~gv~~~~diD~~~~~g  221 (282)
T PRK05808        196 MINEAIFVLAEGVATAEDIDEGMKLG  221 (282)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence            99999999988778899999888533

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=99.60  E-value=4.7e-14  Score=140.20  Aligned_cols=206  Identities=13%  Similarity=0.109  Sum_probs=134.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC----CCC---------CCCCCChHHHHHhhcCCCEE
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG----DQL---------PIYEPGLEDVVTQCRGRNLF   67 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~----~~~---------~~~e~~l~~l~~~~~~~~l~   67 (480)
                      |.||+|||+|.||.++|..|+.+  |++|++||++++.++...+    +..         .+.+...+++     ..++.
T Consensus         3 i~~I~ViGaG~mG~~iA~~la~~--G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~-----~~~i~   75 (291)
T PRK06035          3 IKVIGVVGSGVMGQGIAQVFART--GYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAI-----MARIR   75 (291)
T ss_pred             CcEEEEECccHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHH-----HhCcE
Confidence            36899999999999999999998  9999999999998875432    100         0001111111     13567


Q ss_pred             EecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCC
Q 011654           68 FSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSRE  147 (480)
Q Consensus        68 ~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g  147 (480)
                      ++++. +++++||+||+|+|++.             ....++++++.+.++++++++ ++|.. -+...++..+....  
T Consensus        76 ~~~~~-~~~~~aDlVieav~e~~-------------~~k~~~~~~l~~~~~~~~il~-S~tsg-~~~~~la~~~~~~~--  137 (291)
T PRK06035         76 TSTSY-ESLSDADFIVEAVPEKL-------------DLKRKVFAELERNVSPETIIA-SNTSG-IMIAEIATALERKD--  137 (291)
T ss_pred             eeCCH-HHhCCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEE-EcCCC-CCHHHHHhhcCCcc--
Confidence            78887 46899999999998642             224667788888888888765 33322 23344544443211  


Q ss_pred             CceeEe---eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHH
Q 011654          148 IKYQIL---SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLA  224 (480)
Q Consensus       148 ~~~~v~---~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~  224 (480)
                       .| +.   +.|....++-         .++ .+.  .+++++++.+.++++.+++ .++++.+....-..|+..|    
T Consensus       138 -r~-ig~hf~~P~~~~~~v---------Ev~-~g~--~T~~e~~~~~~~~~~~lgk-~~v~v~d~pgfv~nRl~~~----  198 (291)
T PRK06035        138 -RF-IGMHWFNPAPVMKLI---------EVV-RAA--LTSEETFNTTVELSKKIGK-IPIEVADVPGFFTTRFIEG----  198 (291)
T ss_pred             -cE-EEEecCCCcccCccE---------EEe-CCC--CCCHHHHHHHHHHHHHcCC-eEEEeCCCCCeeHHHHHHH----
Confidence             11 11   2333332221         233 233  2368999999999999874 4566677666666666655    


Q ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          225 QRISSVNAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       225 ~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                          ++||+..+.+.--++++++..++...
T Consensus       199 ----~~~ea~~~~~~g~a~~~~iD~~~~~~  224 (291)
T PRK06035        199 ----WLLEAIRSFEIGIATIKDIDEMCKLA  224 (291)
T ss_pred             ----HHHHHHHHHHcCCCCHHHHHHHHhhc
Confidence                78899999887557899999987543

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.58  E-value=1.6e-13  Score=135.76  Aligned_cols=207  Identities=13%  Similarity=0.134  Sum_probs=135.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEec
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFST   70 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t~   70 (480)
                      |.||+|||+|.||.+||..|+.+  |++|++||++++.++...+.          .-.+.+...+..     ..+++.++
T Consensus         5 ~~~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~-----~~~l~~~~   77 (286)
T PRK07819          5 IQRVGVVGAGQMGAGIAEVCARA--GVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAA-----LARLRFTT   77 (286)
T ss_pred             ccEEEEEcccHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHH-----HhCeEeeC
Confidence            35899999999999999999998  99999999999988762211          001111111111     24788999


Q ss_pred             CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhC-CCCCEEEEecCCccchHHHHHHHHHhcCC--C
Q 011654           71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVS-NSNKIVVEKSTVPVKTAEAIEKILTHNSR--E  147 (480)
Q Consensus        71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g  147 (480)
                      |++ ++++||+||.|||...           ++  -+..+..+.+.+ +++++++..||..+-+.  ++..+.....  +
T Consensus        78 ~~~-~~~~~d~ViEav~E~~-----------~~--K~~l~~~l~~~~~~~~~il~snTS~~~~~~--la~~~~~~~r~~g  141 (286)
T PRK07819         78 DLG-DFADRQLVIEAVVEDE-----------AV--KTEIFAELDKVVTDPDAVLASNTSSIPIMK--LAAATKRPGRVLG  141 (286)
T ss_pred             CHH-HhCCCCEEEEecccCH-----------HH--HHHHHHHHHHhhCCCCcEEEECCCCCCHHH--HHhhcCCCccEEE
Confidence            995 4899999999998632           22  356677888888 78888876554433322  2222211110  1


Q ss_pred             CceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHh-ccCCCCeEEeCChhHHHHhhhHHhHHHHHH
Q 011654          148 IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYA-HWVPEDRIITTNLWSAELSKLAANAFLAQR  226 (480)
Q Consensus       148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~-~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~  226 (480)
                      ..   .++|....+.-         .++.|..   +++++++.+.+++. .+.+ .++.+.+     ...++-|   .+.
T Consensus       142 ~h---f~~P~~~~~lv---------Elv~~~~---T~~~~~~~~~~~~~~~lgk-~pv~v~d-----~pGfi~n---Ri~  197 (286)
T PRK07819        142 LH---FFNPVPVLPLV---------ELVPTLV---TSEATVARAEEFASDVLGK-QVVRAQD-----RSGFVVN---ALL  197 (286)
T ss_pred             Ee---cCCCcccCceE---------EEeCCCC---CCHHHHHHHHHHHHHhCCC-CceEecC-----CCChHHH---HHH
Confidence            11   12443333221         3554433   26899999999987 4753 4555543     3345666   466


Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          227 ISSVNAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       227 ia~~nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                      ..++||...+.++--.+++++..++...
T Consensus       198 ~~~~~Ea~~ll~eGv~~~~dID~~~~~g  225 (286)
T PRK07819        198 VPYLLSAIRMVESGFATAEDIDKAMVLG  225 (286)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence            8999999999987768899999888543

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=99.56  E-value=2.1e-13  Score=135.80  Aligned_cols=209  Identities=13%  Similarity=0.181  Sum_probs=133.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh---------hcCCCEEEecC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ---------CRGRNLFFSTD   71 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~---------~~~~~l~~t~d   71 (480)
                      |+||+|||+|.||.++|..|+.+  |++|++||++++.++...+..    +..++.+.+.         ...++++++++
T Consensus         4 ~~~V~vIG~G~mG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   77 (295)
T PLN02545          4 IKKVGVVGAGQMGSGIAQLAAAA--GMDVWLLDSDPAALSRGLDSI----SSSLARLVKKGKMSQEEADATLGRIRCTTN   77 (295)
T ss_pred             cCEEEEECCCHHHHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhceEeeCC
Confidence            46899999999999999999998  999999999998876432110    0000111100         01135677777


Q ss_pred             HHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCCCCce
Q 011654           72 IEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSREIKY  150 (480)
Q Consensus        72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~  150 (480)
                      .+ ++++||+||+|||...           +  ....++.++.+.++++++|+ ++||+++..   +++.+.....-...
T Consensus        78 ~~-~~~~aD~Vieav~e~~-----------~--~k~~v~~~l~~~~~~~~il~s~tS~i~~~~---l~~~~~~~~r~~g~  140 (295)
T PLN02545         78 LE-ELRDADFIIEAIVESE-----------D--LKKKLFSELDRICKPSAILASNTSSISITR---LASATQRPQQVIGM  140 (295)
T ss_pred             HH-HhCCCCEEEEcCccCH-----------H--HHHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCCcceEEE
Confidence            75 5899999999998642           2  23566778888889888875 667776554   33333221100011


Q ss_pred             eEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHH
Q 011654          151 QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSV  230 (480)
Q Consensus       151 ~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~  230 (480)
                      +. ++|....+.          ..++++.  .++++..+.++++++.++. ..+++.+..     .++.|   .+..+++
T Consensus       141 h~-~~pp~~~~l----------veiv~g~--~t~~e~~~~~~~ll~~lG~-~~~~~~d~~-----g~i~n---ri~~~~~  198 (295)
T PLN02545        141 HF-MNPPPIMKL----------VEIIRGA--DTSDEVFDATKALAERFGK-TVVCSQDYP-----GFIVN---RILMPMI  198 (295)
T ss_pred             ec-cCCcccCce----------EEEeCCC--CCCHHHHHHHHHHHHHcCC-eeEEecCcc-----cHHHH---HHHHHHH
Confidence            11 122222111          1234443  2368899999999999864 344444432     23444   3457789


Q ss_pred             HHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          231 NAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       231 nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                      ||...+.++...+++++..++...
T Consensus       199 ~ea~~~~~~gv~~~~~iD~~~~~g  222 (295)
T PLN02545        199 NEAFYALYTGVASKEDIDTGMKLG  222 (295)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHhc
Confidence            999999998778999999887543

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=99.54  E-value=1.1e-12  Score=127.96  Aligned_cols=155  Identities=18%  Similarity=0.177  Sum_probs=110.9

Q ss_pred             cEEEEEcCChh--------------------HHHHHHHHHHcCCCCeEEEEeCCHHHHH-----HHHCCCCCCCCCChHH
Q 011654            2 VKICCIGAGYV--------------------GGPTMAVIALKCPKIEVAVVDISVSRIA-----AWNGDQLPIYEPGLED   56 (480)
Q Consensus         2 mkI~VIGlG~~--------------------G~~lA~~La~~~~G~~V~~~D~~~~~v~-----~l~~~~~~~~e~~l~~   56 (480)
                      |||+|.|+|+-                    |.+||.+|+++  ||+|++||+++++.+     .+.+            
T Consensus         1 ~~~~~~g~gnq~ly~~~~~~~~~~gg~~p~gGspMArnLlkA--GheV~V~Drnrsa~e~e~~e~Lae------------   66 (341)
T TIGR01724         1 MKVSVYGAGNQKLYTDELNLPEKFGGEPPYGGSRMAIEFAMA--GHDVVLAEPNREFMSDDLWKKVED------------   66 (341)
T ss_pred             CeeEEecCcchhHHHHHhCChhhcCCCCCCCHHHHHHHHHHC--CCEEEEEeCChhhhhhhhhHHHHH------------
Confidence            89999999964                    99999999998  999999999987653     2332            


Q ss_pred             HHHhhcCCCEEEecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           57 VVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        57 l~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                             .+...++++.++++++|+||+|+|++              ..++++++++.+.+++|++||++||++|.+...
T Consensus        67 -------aGA~~AaS~aEAAa~ADVVIL~LPd~--------------aaV~eVl~GLaa~L~~GaIVID~STIsP~t~~~  125 (341)
T TIGR01724        67 -------AGVKVVSDDKEAAKHGEIHVLFTPFG--------------KGTFSIARTIIEHVPENAVICNTCTVSPVVLYY  125 (341)
T ss_pred             -------CCCeecCCHHHHHhCCCEEEEecCCH--------------HHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHH
Confidence                   13456778889899999999999864              235677788999999999999999999988766


Q ss_pred             -HHHHHHhcCCCCceeE-eeCCccccccccccccCCCCeEEEEeCC----CcchHHHHHHHHHHHhccC
Q 011654          137 -IEKILTHNSREIKYQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRE----TPEGQKAIQALKDVYAHWV  199 (480)
Q Consensus       137 -l~~~l~~~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~----~~~~~~~~~~~~~l~~~~~  199 (480)
                       +.+.|+-..  .|+.| .++|- .-||..-++     ..++++..    .-.+++.++++.+|-+...
T Consensus       126 ~~e~~l~~~r--~d~~v~s~HP~-~vP~~~~~~-----~~~~~~~~~~~~~~A~ee~i~~~~el~~~~~  186 (341)
T TIGR01724       126 SLEKILRLKR--TDVGISSMHPA-AVPGTPQHG-----HYVIGGKPTAGKEMATEEQISKCVELAKSTG  186 (341)
T ss_pred             HHHHHhhcCc--cccCeeccCCC-CCCCCCCCc-----eeeeccccccccccCCHHHHHHHHHHHHHhC
Confidence             455554221  24444 35774 234443222     23344321    1235788889999888875

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=99.54  E-value=1.4e-12  Score=133.78  Aligned_cols=224  Identities=14%  Similarity=0.150  Sum_probs=147.6

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      +++|+||| +|.||.++|..|.++  |++|++||+++.                                +++++++++|
T Consensus        98 ~~~I~IiGG~GlmG~slA~~l~~~--G~~V~~~d~~~~--------------------------------~~~~~~~~~a  143 (374)
T PRK11199         98 LRPVVIVGGKGQLGRLFAKMLTLS--GYQVRILEQDDW--------------------------------DRAEDILADA  143 (374)
T ss_pred             cceEEEEcCCChhhHHHHHHHHHC--CCeEEEeCCCcc--------------------------------hhHHHHHhcC
Confidence            47899998 999999999999998  999999998521                                1334567899


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      |+||+|+|..               ...++++++.+ ++++++|++.|++.+...+.+.+.+.    +  .++..+|-+.
T Consensus       144 DlVilavP~~---------------~~~~~~~~l~~-l~~~~iv~Dv~SvK~~~~~~~~~~~~----~--~fvg~HPm~G  201 (374)
T PRK11199        144 GMVIVSVPIH---------------LTEEVIARLPP-LPEDCILVDLTSVKNAPLQAMLAAHS----G--PVLGLHPMFG  201 (374)
T ss_pred             CEEEEeCcHH---------------HHHHHHHHHhC-CCCCcEEEECCCccHHHHHHHHHhCC----C--CEEeeCCCCC
Confidence            9999999853               23566778888 88999999988876555555443221    1  2566788665


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCCh-hHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNL-WSAELSKLAANAFLAQRISSVNAMSALCE  238 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~-~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~  238 (480)
                      .+-..   + ....+++...   +++++.+.+.++++.++  ..++.+++ +..+++++++-.   .++..+.++..+++
T Consensus       202 ~~~~~---~-~~~~vv~~~~---~~~~~~~~~~~l~~~lG--~~v~~~~~~~HD~~~a~vshL---pH~~a~al~~~l~~  269 (374)
T PRK11199        202 PDVGS---L-AKQVVVVCDG---RQPEAYQWLLEQIQVWG--ARLHRISAVEHDQNMAFIQAL---RHFATFAYGLHLAK  269 (374)
T ss_pred             CCCcc---c-CCCEEEEcCC---CCchHHHHHHHHHHHCC--CEEEECCHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence            43222   2 2222333322   14678889999999985  46666554 568899998833   55556666666666


Q ss_pred             HhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHH-HHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011654          239 ATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILN-LVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSS  317 (480)
Q Consensus       239 ~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~-l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~  317 (480)
                       .+.|..++.+..+             +||      +|... ..+.|   +-+  +.+|......|.+.. ...+.+.+.
T Consensus       270 -~~~~~~~~~~~~~-------------~~f------r~~la~~tRia---~~~--p~lw~dI~~~N~~~~-~~l~~~~~~  323 (374)
T PRK11199        270 -ENVDLEQLLALSS-------------PIY------RLELAMVGRLF---AQD--PQLYADIIMSSPENL-ALIKRYYQR  323 (374)
T ss_pred             -cCCCHHHHHHhcC-------------hHH------HHHHHHHHHHH---cCC--HHHHHHHHHhChhHH-HHHHHHHHH
Confidence             7788777654221             111      33222 23333   333  678888888887766 555655554


Q ss_pred             h
Q 011654          318 M  318 (480)
Q Consensus       318 l  318 (480)
                      |
T Consensus       324 l  324 (374)
T PRK11199        324 F  324 (374)
T ss_pred             H
Confidence            4

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=99.50  E-value=1.2e-12  Score=128.79  Aligned_cols=206  Identities=18%  Similarity=0.238  Sum_probs=139.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC----------CCCCCCChHHHHHhhcCCCEEEec
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ----------LPIYEPGLEDVVTQCRGRNLFFST   70 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~----------~~~~e~~l~~l~~~~~~~~l~~t~   70 (480)
                      |+||+|||+|.||..+|..++..  |++|+++|++++.+++..+..          ..+.+...+..     .++++.++
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~~--G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~-----l~~i~~~~   75 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFALA--GYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAA-----LARITPTT   75 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhhc--CCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHH-----HhhccccC
Confidence            58999999999999999999996  899999999987766543210          11111111221     24677888


Q ss_pred             CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEE-EEecCCccchHHHHHHHHHhcCC--C
Q 011654           71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIV-VEKSTVPVKTAEAIEKILTHNSR--E  147 (480)
Q Consensus        71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~--g  147 (480)
                      ++. ++++||+|+.+|+..           .++  -+++++++..++++++++ .+.||+++..   ++..+..-..  |
T Consensus        76 ~~~-~l~~~DlVIEAv~E~-----------lev--K~~vf~~l~~~~~~~aIlASNTSsl~it~---ia~~~~rper~iG  138 (307)
T COG1250          76 DLA-ALKDADLVIEAVVED-----------LEL--KKQVFAELEALAKPDAILASNTSSLSITE---LAEALKRPERFIG  138 (307)
T ss_pred             chh-HhccCCEEEEecccc-----------HHH--HHHHHHHHHhhcCCCcEEeeccCCCCHHH---HHHHhCCchhEEE
Confidence            887 589999999999863           333  478999999999999988 4556666543   2222211000  1


Q ss_pred             CceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654          148 IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI  227 (480)
Q Consensus       148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i  227 (480)
                      ..|   ++|....+-         -.|+ .+.  .+++++++++.++...+.+ .++...|     ...++.|.   +..
T Consensus       139 ~HF---fNP~~~m~L---------VEvI-~g~--~T~~e~~~~~~~~~~~igK-~~vv~~D-----~pGFi~NR---il~  194 (307)
T COG1250         139 LHF---FNPVPLMPL---------VEVI-RGE--KTSDETVERVVEFAKKIGK-TPVVVKD-----VPGFIVNR---LLA  194 (307)
T ss_pred             Eec---cCCCCccee---------EEEe-cCC--CCCHHHHHHHHHHHHHcCC-CCEeecC-----CCceehHh---HHH
Confidence            111   244333221         0233 443  2378999999999999874 3444444     33467774   558


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          228 SSVNAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       228 a~~nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                      .+++|+..+.++-.+++++|..++...
T Consensus       195 ~~~~eA~~l~~eGva~~e~ID~~~~~~  221 (307)
T COG1250         195 ALLNEAIRLLEEGVATPEEIDAAMRQG  221 (307)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence            899999999999889999999999864

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=99.50  E-value=1.7e-12  Score=129.59  Aligned_cols=209  Identities=21%  Similarity=0.249  Sum_probs=137.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||+.+|..|+++  |++|+++++++++++.+++....+ +.+  +.     ...+..+++..+ +..+|+
T Consensus         1 m~I~IiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~g~~~-~~~--~~-----~~~~~~~~~~~~-~~~~d~   69 (304)
T PRK06522          1 MKIAILGAGAIGGLFGAALAQA--GHDVTLVARRGAHLDALNENGLRL-EDG--EI-----TVPVLAADDPAE-LGPQDL   69 (304)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECChHHHHHHHHcCCcc-cCC--ce-----eecccCCCChhH-cCCCCE
Confidence            7999999999999999999998  999999999999999888643332 100  00     011234556665 489999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCC-cccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNP-EFLA  160 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P-e~~~  160 (480)
                      ||+|+|+..               +.++++.+.+.+.++++|+.. +...+..+.+.+.+.+...  -..+.+.+ .+..
T Consensus        70 vila~k~~~---------------~~~~~~~l~~~l~~~~~iv~~-~nG~~~~~~l~~~~~~~~i--~~~~~~~~~~~~~  131 (304)
T PRK06522         70 VILAVKAYQ---------------LPAALPSLAPLLGPDTPVLFL-QNGVGHLEELAAYIGPERV--LGGVVTHAAELEG  131 (304)
T ss_pred             EEEeccccc---------------HHHHHHHHhhhcCCCCEEEEe-cCCCCcHHHHHHhcCcccE--EEEEEEEeeEecC
Confidence            999998531               467888898888877766643 3345555656555533210  01122222 2334


Q ss_pred             ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhH-------------------
Q 011654          161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANA-------------------  221 (480)
Q Consensus       161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~-------------------  221 (480)
                      |+...+.  ...++.+|..+.  ..+..+.+.++|+.... ......|+...+|.|++.|+                   
T Consensus       132 p~~v~~~--~~g~~~ig~~~~--~~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~  206 (304)
T PRK06522        132 PGVVRHT--GGGRLKIGEPDG--ESAAAEALADLLNAAGL-DVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLAD  206 (304)
T ss_pred             CCEEEEc--CCCCEEEeCCCC--CcHHHHHHHHHHHhcCC-CCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcC
Confidence            5543322  224566786532  12346678888887542 22345689999999999885                   


Q ss_pred             --HHHHHHHHHHHHHHHHHHhCCCH
Q 011654          222 --FLAQRISSVNAMSALCEATGADV  244 (480)
Q Consensus       222 --~~~~~ia~~nE~~~l~~~~Gid~  244 (480)
                        .+.+..+.+.|+..++++.|+++
T Consensus       207 ~~~~~l~~~~~~E~~~v~~a~G~~~  231 (304)
T PRK06522        207 PDYRALIRALMEEVAAVAEAEGVHL  231 (304)
T ss_pred             ccHHHHHHHHHHHHHHHHHHcCCCC
Confidence              23455678999999999998753

>PLN02688 pyrroline-5-carboxylate reductase

Probab=99.48  E-value=2.9e-12  Score=125.68  Aligned_cols=194  Identities=10%  Similarity=0.145  Sum_probs=121.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC----eEEEE-eCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI----EVAVV-DISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~----~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      |||+|||+|.||.+||..|.++  |+    +|++| |+++++.+.+.+.                   +++.+++..+++
T Consensus         1 ~kI~~IG~G~mG~a~a~~L~~~--g~~~~~~i~v~~~r~~~~~~~~~~~-------------------g~~~~~~~~e~~   59 (266)
T PLN02688          1 FRVGFIGAGKMAEAIARGLVAS--GVVPPSRISTADDSNPARRDVFQSL-------------------GVKTAASNTEVV   59 (266)
T ss_pred             CeEEEECCcHHHHHHHHHHHHC--CCCCcceEEEEeCCCHHHHHHHHHc-------------------CCEEeCChHHHH
Confidence            8999999999999999999988  77    89999 9999988776542                   345667777878


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe-cCCccchHHHHHHHHHhcCCCCceeEeeC
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK-STVPVKTAEAIEKILTHNSREIKYQILSN  155 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~  155 (480)
                      +++|+||+||| |              ..++++++++.+.++++++||.. ++++.   +.+.+.+..    .. .+-..
T Consensus        60 ~~aDvVil~v~-~--------------~~~~~vl~~l~~~~~~~~~iIs~~~g~~~---~~l~~~~~~----~~-vvr~m  116 (266)
T PLN02688         60 KSSDVIILAVK-P--------------QVVKDVLTELRPLLSKDKLLVSVAAGITL---ADLQEWAGG----RR-VVRVM  116 (266)
T ss_pred             hcCCEEEEEEC-c--------------HHHHHHHHHHHhhcCCCCEEEEecCCCcH---HHHHHHcCC----CC-EEEEC
Confidence            89999999996 3              23577888888888888877633 33332   233332221    11 11134


Q ss_pred             CccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhH-HHHhhh--HHhHHHHHHHHHHHH
Q 011654          156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWS-AELSKL--AANAFLAQRISSVNA  232 (480)
Q Consensus       156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-ae~~Kl--~~N~~~~~~ia~~nE  232 (480)
                      |.....   ..   ....++..+.  ..+++..+.++++|+.++  ..++. +... -..+-+  ...+|.+..+..+.|
T Consensus       117 P~~~~~---~~---~~~~~l~~~~--~~~~~~~~~v~~l~~~~G--~~~~~-~e~~~d~~~~~~g~g~a~~~~~~~a~~e  185 (266)
T PLN02688        117 PNTPCL---VG---EAASVMSLGP--AATADDRDLVATLFGAVG--KIWVV-DEKLLDAVTGLSGSGPAYIFLAIEALAD  185 (266)
T ss_pred             CCcHHH---Hh---CceEEEEeCC--CCCHHHHHHHHHHHHhCC--CEEEe-CHHHcchhHhhhcCHHHHHHHHHHHHHH
Confidence            422111   00   0112233322  124788999999999985  33333 2110 000111  112344445555555


Q ss_pred             HHHHHHHhCCCHHHHHHHhcC
Q 011654          233 MSALCEATGADVTQVSHAIGK  253 (480)
Q Consensus       233 ~~~l~~~~Gid~~~v~~~~~~  253 (480)
                      .   +.+.|+|.+++.+++..
T Consensus       186 a---~~~~Gl~~~~a~~~~~~  203 (266)
T PLN02688        186 G---GVAAGLPRDVALSLAAQ  203 (266)
T ss_pred             H---HHHcCCCHHHHHHHHHH
Confidence            4   88999999999998754

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.46  E-value=1.9e-12  Score=127.84  Aligned_cols=207  Identities=13%  Similarity=0.164  Sum_probs=152.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH---Hhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK---HVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~---a~~~   78 (480)
                      +.|||||||.||..+|.+++++  |+.|.+|+|++++.+.+.++...              .+++..+.++++   .++.
T Consensus         4 ~~iGviGLaVMG~NLaLNi~~~--G~~VavyNRt~~ktd~f~~~~~~--------------~k~i~~~~sieefV~~Le~   67 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNIADH--GYTVAVYNRTTEKTDEFLAERAK--------------GKNIVPAYSIEEFVASLEK   67 (473)
T ss_pred             cceeeEehhhhhHHHHHHHHhc--CceEEEEeCCHHHHHHHHHhCcc--------------CCCccccCcHHHHHHHhcC
Confidence            4699999999999999999999  99999999999999988754211              112333333333   3567


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec-CCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS-TVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      ..-|+++|...              +.+.+.++++.++|.++.|||+-. +..+.|.++..++ .+.+  .. ++..+-.
T Consensus        68 PRkI~lMVkAG--------------~~VD~~I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL-~~~G--i~-FvG~GVS  129 (473)
T COG0362          68 PRKILLMVKAG--------------TPVDAVIEQLLPLLEKGDIIIDGGNSHYKDTIRRNKEL-SEKG--IL-FVGMGVS  129 (473)
T ss_pred             CceEEEEEecC--------------CcHHHHHHHHHhhcCCCCEEEeCCCcCCchHHHHHHHH-HhcC--Ce-EEecccc
Confidence            78899998753              235678999999999999999874 4466777776543 3332  22 2333332


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCC---CC--eEEeCChhHHHHhhhHHhHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVP---ED--RIITTNLWSAELSKLAANAFLAQRISSVNA  232 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~---~~--~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE  232 (480)
                      -..+|     .+..|.+|.||.     +++.+.+.++|..+.-   +.  ..+++.-+.+..+|+++|..-.--+.++.|
T Consensus       130 GGEeG-----A~~GPSiMpGG~-----~eay~~v~pil~~IaAk~~g~pCc~~iG~~GAGHfVKmVHNGIEYgDMQlIaE  199 (473)
T COG0362         130 GGEEG-----ARHGPSIMPGGQ-----KEAYELVAPILTKIAAKVDGEPCCTWIGPDGAGHFVKMVHNGIEYGDMQLIAE  199 (473)
T ss_pred             ccccc-----cccCCCcCCCCC-----HHHHHHHHHHHHHHHhhcCCCCceeeECCCCCCceeeeeecCchHHHHHHHHH
Confidence            22333     245667899996     8999999999998752   11  235566688999999999999999999999


Q ss_pred             HHHHHHH-hCCCHHHHHHHhc
Q 011654          233 MSALCEA-TGADVTQVSHAIG  252 (480)
Q Consensus       233 ~~~l~~~-~Gid~~~v~~~~~  252 (480)
                      ...+.+. +|++.+++.++..
T Consensus       200 ~Y~ilk~~lgls~~ei~~vF~  220 (473)
T COG0362         200 AYDILKDGLGLSAEEIAEVFE  220 (473)
T ss_pred             HHHHHHHhcCCCHHHHHHHHH
Confidence            9999988 8999888777664

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=99.46  E-value=1.3e-11  Score=123.59  Aligned_cols=167  Identities=19%  Similarity=0.171  Sum_probs=111.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK--IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      +||+|||+|.||.++|..|.+.  |  ++|++||+++++.+.+++...                 ....++++.++++++
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~--g~~~~V~~~dr~~~~~~~a~~~g~-----------------~~~~~~~~~~~~~~a   67 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRL--GLAGEIVGADRSAETRARARELGL-----------------GDRVTTSAAEAVKGA   67 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhc--CCCcEEEEEECCHHHHHHHHhCCC-----------------CceecCCHHHHhcCC
Confidence            6899999999999999999987  6  489999999998877664210                 112345666778999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc-
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF-  158 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~-  158 (480)
                      |+||+|+|..               .+.++++++.+.++++.+|++.+++.....+.+.+.+..   +.. ++..+|-. 
T Consensus        68 DvViiavp~~---------------~~~~v~~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~---~~~-~v~~hPm~g  128 (307)
T PRK07502         68 DLVILCVPVG---------------ASGAVAAEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPE---GVH-FIPGHPLAG  128 (307)
T ss_pred             CEEEECCCHH---------------HHHHHHHHHHhhCCCCCEEEeCccchHHHHHHHHHhCCC---CCe-EEeCCCCCC
Confidence            9999999853               235667788888888998887766655444444333221   111 34445643 


Q ss_pred             ---ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCCh
Q 011654          159 ---LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNL  209 (480)
Q Consensus       159 ---~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~  209 (480)
                         .+++.+..+++....+++.. ....+++.++.+.++++.++  ..++..++
T Consensus       129 ~e~~G~~~a~~~l~~g~~~~l~~-~~~~~~~~~~~~~~l~~~lG--~~~~~~~~  179 (307)
T PRK07502        129 TEHSGPDAGFAELFENRWCILTP-PEGTDPAAVARLTAFWRALG--ARVEEMDP  179 (307)
T ss_pred             CcccchhhcCHHHHCCCeEEEeC-CCCCCHHHHHHHHHHHHHcC--CEEEEcCH
Confidence               34444444555444444442 22235778899999999985  45655554

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.43  E-value=1.3e-11  Score=122.01  Aligned_cols=196  Identities=14%  Similarity=0.203  Sum_probs=123.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCH-HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPK----IEVAVVDISV-SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~-~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a   75 (480)
                      .|||+|||+|.||.+||..|.++  |    ++|+++|+++ ++.+.+...                  .+++.++++.++
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~~~--g~~~~~~v~v~~r~~~~~~~~l~~~------------------~g~~~~~~~~e~   62 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLLHA--NVVKGEQITVSNRSNETRLQELHQK------------------YGVKGTHNKKEL   62 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCCHHHHHHHHHh------------------cCceEeCCHHHH
Confidence            38999999999999999999987  6    8999999975 466666531                  124566777787


Q ss_pred             hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe-cCCccchHHHHHHHHHhcCCCCceeEe-
Q 011654           76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK-STVPVKTAEAIEKILTHNSREIKYQIL-  153 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~-  153 (480)
                      +.+||+||+|||..               .+.++++++.+.++++++||.. +++.+.+.++   .+..     +..++ 
T Consensus        63 ~~~aDvVilav~p~---------------~~~~vl~~l~~~~~~~~liIs~~aGi~~~~l~~---~~~~-----~~~v~r  119 (279)
T PRK07679         63 LTDANILFLAMKPK---------------DVAEALIPFKEYIHNNQLIISLLAGVSTHSIRN---LLQK-----DVPIIR  119 (279)
T ss_pred             HhcCCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEECCCCCHHHHHH---HcCC-----CCeEEE
Confidence            88999999999842               2466778888888888888875 7777665444   2221     11222 


Q ss_pred             eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHH-HHhhhHH--hHHHHHHHHHH
Q 011654          154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSA-ELSKLAA--NAFLAQRISSV  230 (480)
Q Consensus       154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~a-e~~Kl~~--N~~~~~~ia~~  230 (480)
                      ..|...  .. .   .....+++++..  .+++..+.++++|+.++  ..+... -+.- ..+-+..  ..|..   .++
T Consensus       120 ~mPn~~--~~-~---~~~~t~~~~~~~--~~~~~~~~v~~l~~~~G--~~~~v~-e~~~~~~~a~~Gsgpa~~~---~~~  185 (279)
T PRK07679        120 AMPNTS--AA-I---LKSATAISPSKH--ATAEHIQTAKALFETIG--LVSVVE-EEDMHAVTALSGSGPAYIY---YVV  185 (279)
T ss_pred             ECCCHH--HH-H---hcccEEEeeCCC--CCHHHHHHHHHHHHhCC--cEEEeC-HHHhhhHHHhhcCHHHHHH---HHH
Confidence            233211  11 1   011135556542  25678899999999985  344432 1100 0011111  12322   233


Q ss_pred             HHHHHHHHHhCCCHHHHHHHhcC
Q 011654          231 NAMSALCEATGADVTQVSHAIGK  253 (480)
Q Consensus       231 nE~~~l~~~~Gid~~~v~~~~~~  253 (480)
                      .-+...+.+.|+|.++..+++..
T Consensus       186 eal~e~~~~~Gl~~~~a~~~~~~  208 (279)
T PRK07679        186 EAMEKAAKKIGLKEDVAKSLILQ  208 (279)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHH
Confidence            33344688999999988888754

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.42  E-value=7.2e-12  Score=138.50  Aligned_cols=204  Identities=17%  Similarity=0.203  Sum_probs=138.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEec
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFST   70 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t~   70 (480)
                      |.||+|||+|.||..+|..++.+  |++|+++|++++.++...+.          ...+.+...+..     .+++++++
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~-----~~~i~~~~  385 (715)
T PRK11730        313 VKQAAVLGAGIMGGGIAYQSASK--GVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGV-----LSSIRPTL  385 (715)
T ss_pred             cceEEEECCchhHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHH-----HhCeEEeC
Confidence            46899999999999999999998  99999999999876643211          001111112221     25789999


Q ss_pred             CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCC--C
Q 011654           71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSR--E  147 (480)
Q Consensus        71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g  147 (480)
                      |+++ +++||+||.|||..           .++  -++++.++.+++++++++. ++||+++..   |+..+.....  |
T Consensus       386 ~~~~-~~~aDlViEav~E~-----------l~~--K~~vf~~l~~~~~~~~ilasNTSsl~i~~---la~~~~~p~r~~g  448 (715)
T PRK11730        386 DYAG-FERVDVVVEAVVEN-----------PKV--KAAVLAEVEQKVREDTILASNTSTISISL---LAKALKRPENFCG  448 (715)
T ss_pred             CHHH-hcCCCEEEecccCc-----------HHH--HHHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCCccEEE
Confidence            9965 89999999999863           333  4789999999999998874 445566543   2222221110  1


Q ss_pred             CceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654          148 IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI  227 (480)
Q Consensus       148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i  227 (480)
                      ..|   ++|....+-      .   -||-|..   +++++++.+..++..+++ .++.+.     +...++.|-   +..
T Consensus       449 ~Hf---f~P~~~~~l------V---Evv~g~~---T~~~~~~~~~~~~~~lgk-~pv~v~-----d~pGfv~nR---i~~  504 (715)
T PRK11730        449 MHF---FNPVHRMPL------V---EVIRGEK---TSDETIATVVAYASKMGK-TPIVVN-----DCPGFFVNR---VLF  504 (715)
T ss_pred             Eec---CCcccccce------E---EeeCCCC---CCHHHHHHHHHHHHHhCC-ceEEec-----CcCchhHHH---HHH
Confidence            111   244332221      1   2444432   368999999999999874 566664     355677784   567


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhcC
Q 011654          228 SSVNAMSALCEATGADVTQVSHAIGK  253 (480)
Q Consensus       228 a~~nE~~~l~~~~Gid~~~v~~~~~~  253 (480)
                      +++||+..+.+.. ++++++..++..
T Consensus       505 ~~~~ea~~lv~~G-a~~e~ID~a~~~  529 (715)
T PRK11730        505 PYFAGFSQLLRDG-ADFRQIDKVMEK  529 (715)
T ss_pred             HHHHHHHHHHHcC-CCHHHHHHHHHh
Confidence            8999999998865 999999998764

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=99.42  E-value=3.6e-11  Score=120.81  Aligned_cols=256  Identities=16%  Similarity=0.101  Sum_probs=151.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .|||+|||+|.||+.+|..|+++  |++|+++.+++.  +.+++....+....-+ .    ......+++++++ ...+|
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~--g~~V~~~~r~~~--~~~~~~g~~~~~~~~~-~----~~~~~~~~~~~~~-~~~~D   74 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARA--GFDVHFLLRSDY--EAVRENGLQVDSVHGD-F----HLPPVQAYRSAED-MPPCD   74 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCH--HHHHhCCeEEEeCCCC-e----eecCceEEcchhh-cCCCC
Confidence            38999999999999999999998  999999999863  4455432222110000 0    0011334455443 67899


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      +||+|||+..               +.++++.+.+.+.++++|+. -+...+..+.+.+.+.+... ..-.+..+-.+..
T Consensus        75 ~vilavK~~~---------------~~~~~~~l~~~~~~~~~iv~-lqNG~~~~e~l~~~~~~~~v-~~g~~~~~a~~~~  137 (313)
T PRK06249         75 WVLVGLKTTA---------------NALLAPLIPQVAAPDAKVLL-LQNGLGVEEQLREILPAEHL-LGGLCFICSNRVG  137 (313)
T ss_pred             EEEEEecCCC---------------hHhHHHHHhhhcCCCCEEEE-ecCCCCcHHHHHHHCCCCcE-EEEeeeEeEecCC
Confidence            9999998642               25677788888877776653 34455665666666543210 0000111223445


Q ss_pred             ccccccccCCCCeEEEEeCCCcch-----HHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhH--------------
Q 011654          161 EGTAIQDLFNPDRVLIGGRETPEG-----QKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANA--------------  221 (480)
Q Consensus       161 ~G~a~~~~~~~~~vviG~~~~~~~-----~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~--------------  221 (480)
                      ||...+.  ...++.+|..+.. +     .+..+.+.++|+.... ......|+....|.|++-|+              
T Consensus       138 pg~v~~~--~~g~~~iG~~~~~-~~~~~~~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g  213 (313)
T PRK06249        138 PGVIHHL--AYGRVNLGYHSGP-AADDGITARVEEGAALFRAAGI-DSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTD  213 (313)
T ss_pred             CeEEEEC--CCCcEEEecCCCC-cccchHHHHHHHHHHHHHhCCC-CceeCchHHHHHHhHhheecchhHHHHHhCCChH
Confidence            5543332  2234567754321 2     3556677888887532 34456799999999999884              


Q ss_pred             -------HHHHHHHHHHHHHHHHHHhCCC-----HHHHHHHhcCCCCC-CCccccCCCCCcccchhhhH--HHHHHHHHH
Q 011654          222 -------FLAQRISSVNAMSALCEATGAD-----VTQVSHAIGKDTRI-GPRFLNSSVGFGGSCFQKDI--LNLVYICEC  286 (480)
Q Consensus       222 -------~~~~~ia~~nE~~~l~~~~Gid-----~~~v~~~~~~~~~~-~~~~~~pg~g~gg~cl~kD~--~~l~~~a~~  286 (480)
                             .+.+..+.+.|+..++++.|++     .+++++.+...+.. ++++.+-   -.|.-.--|.  .++++++++
T Consensus       214 ~l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~~~~~~~~~~~~~~~~~~sSM~qD~---~~gr~tEid~i~G~vv~~a~~  290 (313)
T PRK06249        214 PLMADPDSRALIRALMAEVIQGAAACGHTLPEGYADHMLAVTERMPDYRPSMYHDF---EEGRPLELEAIYANPLAAARA  290 (313)
T ss_pred             HHHhCccHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHhhcCCCCCChHHHHH---HCCCcccHHHHhhHHHHHHHH
Confidence                   3456667899999999999986     34444444322211 1111100   0111122222  267888999


Q ss_pred             cCCc
Q 011654          287 NGLT  290 (480)
Q Consensus       287 ~g~~  290 (480)
                      +|++
T Consensus       291 ~Gi~  294 (313)
T PRK06249        291 AGCA  294 (313)
T ss_pred             hCCC
Confidence            9987

>PRK06545 prephenate dehydrogenase; Validated

Probab=99.41  E-value=2.7e-11  Score=123.83  Aligned_cols=178  Identities=18%  Similarity=0.193  Sum_probs=114.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||.++|..|.++  |++|.+|+++++..+........+               .-..++++++++++||+
T Consensus         1 ~~I~iIG~GliG~siA~~L~~~--G~~v~i~~~~~~~~~~~~a~~~~~---------------~~~~~~~~~~~~~~aDl   63 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAIKAA--GPDVFIIGYDPSAAQLARALGFGV---------------IDELAADLQRAAAEADL   63 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHHHhc--CCCeEEEEeCCCHHHHHHHhcCCC---------------CcccccCHHHHhcCCCE
Confidence            4899999999999999999998  899999998877654433211000               01234677777899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHh-hCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc---
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIAN-VSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE---  157 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe---  157 (480)
                      ||+|||..               .+.++++++.+ .++++.+|++.+++.....+.+.+.+...   .. ++..+|.   
T Consensus        64 VilavP~~---------------~~~~vl~~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~---~~-~ig~HPMaG~  124 (359)
T PRK06545         64 IVLAVPVD---------------ATAALLAELADLELKPGVIVTDVGSVKGAILAEAEALLGDL---IR-FVGGHPMAGS  124 (359)
T ss_pred             EEEeCCHH---------------HHHHHHHHHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCC---Ce-EEeeCCcCcC
Confidence            99999842               35677888887 47888888887777766655554442221   12 3444663   


Q ss_pred             -cccccccccccCCC-CeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChh-HHHHhhhHH
Q 011654          158 -FLAEGTAIQDLFNP-DRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLW-SAELSKLAA  219 (480)
Q Consensus       158 -~~~~G~a~~~~~~~-~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~  219 (480)
                       +.++..+..+++.. +.++..+  ...+++.++.++++++.++  ..++.++++ ...++.++.
T Consensus       125 e~sG~~aa~~~lf~g~~~il~~~--~~~~~~~~~~v~~l~~~lG--a~~v~~~~~~HD~~~A~vs  185 (359)
T PRK06545        125 HKSGVAAARADLFENAPWVLTPD--DHTDPDAVAELKDLLSGTG--AKFVVLDAEEHDRAVALVS  185 (359)
T ss_pred             chhhHHHhcHHHHCCCcEEEecC--CCCCHHHHHHHHHHHHHcC--CEEEECCHHHHhHHHhHhc
Confidence             33333344444443 3444332  2336788999999999985  456555543 334444443

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.40  E-value=4.1e-11  Score=117.60  Aligned_cols=197  Identities=16%  Similarity=0.157  Sum_probs=123.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCC---CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPK---IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G---~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      ||||+|||+|.||..+|..|.++  |   ++|++||+++++.+.+.+..                  ++..+++..+++.
T Consensus         2 mm~I~iIG~G~mG~~la~~l~~~--g~~~~~v~v~~r~~~~~~~~~~~~------------------g~~~~~~~~~~~~   61 (267)
T PRK11880          2 MKKIGFIGGGNMASAIIGGLLAS--GVPAKDIIVSDPSPEKRAALAEEY------------------GVRAATDNQEAAQ   61 (267)
T ss_pred             CCEEEEEechHHHHHHHHHHHhC--CCCcceEEEEcCCHHHHHHHHHhc------------------CCeecCChHHHHh
Confidence            68999999999999999999987  7   78999999999888776520                  2345567777788


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe-cCCccchHHHHHHHHHhcCCCCceeEeeCC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK-STVPVKTAEAIEKILTHNSREIKYQILSNP  156 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~P  156 (480)
                      ++|+||+|||..               .+.++++.+.+++  +++|+.. +.++   .+.+.+.+..   +.. .+-..|
T Consensus        62 ~advVil~v~~~---------------~~~~v~~~l~~~~--~~~vvs~~~gi~---~~~l~~~~~~---~~~-iv~~~P  117 (267)
T PRK11880         62 EADVVVLAVKPQ---------------VMEEVLSELKGQL--DKLVVSIAAGVT---LARLERLLGA---DLP-VVRAMP  117 (267)
T ss_pred             cCCEEEEEcCHH---------------HHHHHHHHHHhhc--CCEEEEecCCCC---HHHHHHhcCC---CCc-EEEecC
Confidence            999999999742               3577888888776  4555433 2232   2334444331   111 222445


Q ss_pred             ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhh-hHHhHHHHHHHHHHHHHHH
Q 011654          157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSK-LAANAFLAQRISSVNAMSA  235 (480)
Q Consensus       157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K-l~~N~~~~~~ia~~nE~~~  235 (480)
                      ....      .+......+.-+  ...+++..+.++.+|+.++  ..++..+...-...= +..+ .-+....++..+..
T Consensus       118 ~~p~------~~~~~~~~i~~~--~~~~~~~~~~v~~l~~~lG--~~~~~~~e~~~d~~~a~~~~-~pa~~~~~~~~~~~  186 (267)
T PRK11880        118 NTPA------LVGAGMTALTAN--ALVSAEDRELVENLLSAFG--KVVWVDDEKQMDAVTAVSGS-GPAYVFLFIEALAD  186 (267)
T ss_pred             CchH------HHcCceEEEecC--CCCCHHHHHHHHHHHHhCC--eEEEECChHhcchHHHHhcC-hHHHHHHHHHHHHH
Confidence            3211      011111222222  2236888999999999985  355555433222222 2112 12233567777788


Q ss_pred             HHHHhCCCHHHHHHHhc
Q 011654          236 LCEATGADVTQVSHAIG  252 (480)
Q Consensus       236 l~~~~Gid~~~v~~~~~  252 (480)
                      .+.+.|++.++..+++.
T Consensus       187 ~~~~~Gl~~~~a~~~~~  203 (267)
T PRK11880        187 AGVKLGLPREQARKLAA  203 (267)
T ss_pred             HHHHcCCCHHHHHHHHH
Confidence            88889999988777664

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=99.39  E-value=2.1e-10  Score=112.47  Aligned_cols=176  Identities=18%  Similarity=0.205  Sum_probs=114.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEE--EeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCH-HHHhc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAV--VDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDI-EKHVA   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~--~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~-~~a~~   77 (480)
                      +|+|+|+|+|.||..+|..|.++  |+.|.+  +|++.+..+.-....       +          .-+.+.+. .+++.
T Consensus         3 ~~~v~IvG~GliG~s~a~~l~~~--g~~v~i~g~d~~~~~~~~a~~lg-------v----------~d~~~~~~~~~~~~   63 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARALKEA--GLVVRIIGRDRSAATLKAALELG-------V----------IDELTVAGLAEAAA   63 (279)
T ss_pred             CcEEEEECCchHHHHHHHHHHHc--CCeEEEEeecCcHHHHHHHhhcC-------c----------ccccccchhhhhcc
Confidence            47999999999999999999998  787755  555544443322210       0          01222333 45577


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCC-CCceeEeeCC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNP  156 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~-g~~~~v~~~P  156 (480)
                      .+|+||+|||-               ....++++++.++++++++|++.+++.-...+.    +++... .. -++..+|
T Consensus        64 ~aD~VivavPi---------------~~~~~~l~~l~~~l~~g~iv~Dv~S~K~~v~~a----~~~~~~~~~-~~vg~HP  123 (279)
T COG0287          64 EADLVIVAVPI---------------EATEEVLKELAPHLKKGAIVTDVGSVKSSVVEA----MEKYLPGDV-RFVGGHP  123 (279)
T ss_pred             cCCEEEEeccH---------------HHHHHHHHHhcccCCCCCEEEecccccHHHHHH----HHHhccCCC-eeEecCC
Confidence            89999999984               345788899999999999999765554333333    333322 12 3567788


Q ss_pred             ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhH-HHHhhhHHh
Q 011654          157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWS-AELSKLAAN  220 (480)
Q Consensus       157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-ae~~Kl~~N  220 (480)
                      -+..+  +..+++.+..+|+ ++....+.+.++.+.++|+..+  ..++.++++. -..+-.++-
T Consensus       124 M~G~~--~~~~lf~~~~~vl-tp~~~~~~~~~~~~~~~~~~~g--a~~v~~~~eeHD~~~a~vsh  183 (279)
T COG0287         124 MFGPE--ADAGLFENAVVVL-TPSEGTEKEWVEEVKRLWEALG--ARLVEMDAEEHDRVMAAVSH  183 (279)
T ss_pred             CCCCc--ccccccCCCEEEE-cCCCCCCHHHHHHHHHHHHHcC--CEEEEcChHHHhHHHHHHHH
Confidence            76654  3455666666655 5555445788999999999874  5777777653 333444433

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=99.39  E-value=1.7e-11  Score=135.29  Aligned_cols=205  Identities=16%  Similarity=0.202  Sum_probs=138.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEec
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFST   70 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t~   70 (480)
                      |.||+|||+|.||..+|..++.+  |++|+++|++++.++...+.          ...+.....+..     ..+++.++
T Consensus       313 i~~v~ViGaG~mG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~i~~~~  385 (714)
T TIGR02437       313 VKQAAVLGAGIMGGGIAYQSASK--GTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGV-----LNGITPTL  385 (714)
T ss_pred             cceEEEECCchHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHH-----HhCeEEeC
Confidence            46899999999999999999998  99999999999887653321          001111111111     25789999


Q ss_pred             CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCC--C
Q 011654           71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSR--E  147 (480)
Q Consensus        71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g  147 (480)
                      ++++ +++||+||.||+..           .++  -++++.++.+++++++|+. ++|++++..   ++..+..-..  |
T Consensus       386 ~~~~-~~~aDlViEav~E~-----------l~~--K~~vf~~l~~~~~~~~ilasnTS~l~i~~---ia~~~~~p~r~ig  448 (714)
T TIGR02437       386 SYAG-FDNVDIVVEAVVEN-----------PKV--KAAVLAEVEQHVREDAILASNTSTISISL---LAKALKRPENFCG  448 (714)
T ss_pred             CHHH-hcCCCEEEEcCccc-----------HHH--HHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHhhcCCcccEEE
Confidence            9854 89999999999863           233  4789999999999999874 345555443   2222221110  1


Q ss_pred             CceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654          148 IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI  227 (480)
Q Consensus       148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i  227 (480)
                      ..|   ++|....+-      .   -||- +.  .+++++++.+.+++..+.+ .++.+.+     ...++.|-   +..
T Consensus       449 ~Hf---f~P~~~~~l------v---Evv~-g~--~Ts~~~~~~~~~~~~~lgk-~pv~v~d-----~pGfi~NR---l~~  504 (714)
T TIGR02437       449 MHF---FNPVHRMPL------V---EVIR-GE--KSSDETIATVVAYASKMGK-TPIVVND-----CPGFFVNR---VLF  504 (714)
T ss_pred             Eec---CCCcccCce------E---eecC-CC--CCCHHHHHHHHHHHHHcCC-EEEEeCC-----cccchHHH---HHH
Confidence            111   244333221      1   2443 33  2378999999999999864 4566643     45678884   567


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          228 SSVNAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       228 a~~nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                      ++++|...+.+. |++++++..++...
T Consensus       505 ~~~~ea~~l~~e-G~~~~~ID~a~~~~  530 (714)
T TIGR02437       505 PYFGGFSKLLRD-GADFVRIDKVMEKQ  530 (714)
T ss_pred             HHHHHHHHHHHC-CCCHHHHHHHHHhc
Confidence            899999999875 59999999988643

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=99.38  E-value=2.5e-11  Score=134.00  Aligned_cols=204  Identities=18%  Similarity=0.142  Sum_probs=135.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHH---------hhcCCCEEEec
Q 011654            1 MVKICCIGAGYVGGPTMAVIA-LKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVT---------QCRGRNLFFST   70 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~---------~~~~~~l~~t~   70 (480)
                      |.||+|||+|.||..+|..++ .+  |++|+++|++++.++......    +..++.++.         .....+++.++
T Consensus       304 i~~v~ViGaG~mG~~iA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~i~~~~  377 (699)
T TIGR02440       304 IKKVGILGGGLMGGGIASVTATKA--GIPVRIKDINPQGINNALKYA----WKLLDKGVKRRHMTPAERDNQMALITGTT  377 (699)
T ss_pred             ccEEEEECCcHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHcCeEEeC
Confidence            468999999999999999998 47  999999999998766543210    000111110         00125789999


Q ss_pred             CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCCCCc
Q 011654           71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSREIK  149 (480)
Q Consensus        71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~  149 (480)
                      +++ ++++||+||.|||..           .+  .-++++.++.+++++++|+. ++|++++..   ++..+....   .
T Consensus       378 ~~~-~~~~adlViEav~E~-----------l~--~K~~v~~~l~~~~~~~~ilasnTS~l~i~~---la~~~~~p~---r  437 (699)
T TIGR02440       378 DYR-GFKDVDIVIEAVFED-----------LA--LKHQMVKDIEQECAAHTIFASNTSSLPIGQ---IAAAASRPE---N  437 (699)
T ss_pred             ChH-HhccCCEEEEecccc-----------HH--HHHHHHHHHHhhCCCCcEEEeCCCCCCHHH---HHHhcCCcc---c
Confidence            986 589999999999853           23  34789999999999998874 334555543   222222111   1


Q ss_pred             eeEe--eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654          150 YQIL--SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI  227 (480)
Q Consensus       150 ~~v~--~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i  227 (480)
                      |..+  ++|....+-         --|| .+..  +++++++.+..++..+.+ .++.+.|     ...++.|   .+..
T Consensus       438 ~~g~HffnP~~~~~l---------VEvv-~g~~--T~~~~~~~~~~~~~~~gk-~pv~v~d-----~pGfi~n---Rl~~  496 (699)
T TIGR02440       438 VIGLHYFSPVEKMPL---------VEVI-PHAG--TSEQTIATTVALAKKQGK-TPIVVAD-----KAGFYVN---RILA  496 (699)
T ss_pred             EEEEecCCccccCce---------EEEe-CCCC--CCHHHHHHHHHHHHHcCC-eEEEEcc-----ccchHHH---HHHH
Confidence            1111  234332221         0244 3332  378999999999999874 5566643     4567777   4568


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhc
Q 011654          228 SSVNAMSALCEATGADVTQVSHAIG  252 (480)
Q Consensus       228 a~~nE~~~l~~~~Gid~~~v~~~~~  252 (480)
                      +++||...+.+ -|++++++..++.
T Consensus       497 ~~~~Ea~~l~~-~G~~~~dID~a~~  520 (699)
T TIGR02440       497 PYMNEAARLLL-EGEPVEHIDKALV  520 (699)
T ss_pred             HHHHHHHHHHH-CCCCHHHHHHHHH
Confidence            89999998887 4689999999883

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.38  E-value=3.9e-11  Score=117.85  Aligned_cols=201  Identities=16%  Similarity=0.156  Sum_probs=121.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKC--PKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|||+|.||.+|+..|.+++  ...+|+++|+++++.+.+.+.                  -++..+++..+++.+|
T Consensus         3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~------------------~g~~~~~~~~e~~~~a   64 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDK------------------YGITITTNNNEVANSA   64 (272)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHh------------------cCcEEeCCcHHHHhhC
Confidence            68999999999999999999871  123799999999988876531                  0234566777778899


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      |+||+||| |.              .+.++++++.++++++++||  |....=+.+.|++.+....   .  +    .|.
T Consensus        65 DiIiLavk-P~--------------~~~~vl~~l~~~~~~~~lvI--Si~AGi~i~~l~~~l~~~~---~--v----vR~  118 (272)
T PRK12491         65 DILILSIK-PD--------------LYSSVINQIKDQIKNDVIVV--TIAAGKSIKSTENEFDRKL---K--V----IRV  118 (272)
T ss_pred             CEEEEEeC-hH--------------HHHHHHHHHHHhhcCCcEEE--EeCCCCcHHHHHHhcCCCC---c--E----EEE
Confidence            99999998 42              35788888988888887776  2233233455665553211   1  1    123


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA  239 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~  239 (480)
                      .|-.+..--... ..+..+  +..+++..+.++.||+.++.  .+.. +-..-...=-+.-+-=+....++..+...+.+
T Consensus       119 MPN~~~~vg~g~-t~~~~~--~~~~~~~~~~v~~lf~~~G~--~~~~-~E~~~d~~talsgsgPAf~~~~~eal~~a~v~  192 (272)
T PRK12491        119 MPNTPVLVGEGM-SALCFN--EMVTEKDIKEVLNIFNIFGQ--TEVV-NEKLMDVVTSISGSSPAYVYMFIEAMADAAVL  192 (272)
T ss_pred             CCChHHHHcCce-EEEEeC--CCCCHHHHHHHHHHHHcCCC--EEEE-cHHHhhhHHHhccCcHHHHHHHHHHHHHHHHH
Confidence            332221111111 122222  22356678899999999853  4433 21110111111111112334455666777888


Q ss_pred             hCCCHHHHHHHhc
Q 011654          240 TGADVTQVSHAIG  252 (480)
Q Consensus       240 ~Gid~~~v~~~~~  252 (480)
                      .|++.++..+++.
T Consensus       193 ~Gl~~~~A~~l~~  205 (272)
T PRK12491        193 GGMPRKQAYKFAA  205 (272)
T ss_pred             cCCCHHHHHHHHH
Confidence            8998887777654

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=99.37  E-value=2.4e-11  Score=134.36  Aligned_cols=203  Identities=16%  Similarity=0.158  Sum_probs=136.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEe
Q 011654            1 MVKICCIGAGYVGGPTMAVIA-LKCPKIEVAVVDISVSRIAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFS   69 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t   69 (480)
                      |.||+|||+|.||..+|..++ ..  |++|+++|++++.++...+.          ...+.+...+.     ...+++++
T Consensus       309 i~~v~ViGaG~mG~giA~~~a~~~--G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~~~~i~~~  381 (708)
T PRK11154        309 VNKVGVLGGGLMGGGIAYVTATKA--GLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDK-----QMALISGT  381 (708)
T ss_pred             ccEEEEECCchhhHHHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH-----HHhcEEEe
Confidence            468999999999999999999 76  99999999999876653221          00011111111     12578999


Q ss_pred             cCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCC--
Q 011654           70 TDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSR--  146 (480)
Q Consensus        70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--  146 (480)
                      ++++ ++++||+||.|||..             ++.-++++.++.+++++++++. ++|++++..   |+..+.....  
T Consensus       382 ~~~~-~~~~aDlViEav~E~-------------~~~K~~v~~~le~~~~~~~ilasnTS~l~i~~---la~~~~~p~r~i  444 (708)
T PRK11154        382 TDYR-GFKHADVVIEAVFED-------------LALKQQMVAEVEQNCAPHTIFASNTSSLPIGQ---IAAAAARPEQVI  444 (708)
T ss_pred             CChH-HhccCCEEeeccccc-------------HHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH---HHHhcCcccceE
Confidence            9985 589999999999853             2334889999999999999885 334555543   2222221110  


Q ss_pred             CCceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHH
Q 011654          147 EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQR  226 (480)
Q Consensus       147 g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~  226 (480)
                      |..|   ++|....+-      .   -||-| .  .+++++.+.+..++..+.+ .++.+.|     ...++.|   .+.
T Consensus       445 g~Hf---f~P~~~~~l------V---Evv~g-~--~Ts~~~~~~~~~~~~~~gk-~pv~v~d-----~pGfi~n---Rl~  500 (708)
T PRK11154        445 GLHY---FSPVEKMPL------V---EVIPH-A--KTSAETIATTVALAKKQGK-TPIVVRD-----GAGFYVN---RIL  500 (708)
T ss_pred             EEec---CCccccCce------E---EEECC-C--CCCHHHHHHHHHHHHHcCC-ceEEEec-----cCcHHHH---HHH
Confidence            1111   244433321      1   24433 3  2378999999999998864 4555543     4456777   566


Q ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHhc
Q 011654          227 ISSVNAMSALCEATGADVTQVSHAIG  252 (480)
Q Consensus       227 ia~~nE~~~l~~~~Gid~~~v~~~~~  252 (480)
                      .+++||...+.+. |++++++..++.
T Consensus       501 ~~~~~EA~~lv~e-Gv~~~dID~a~~  525 (708)
T PRK11154        501 APYINEAARLLLE-GEPIEHIDAALV  525 (708)
T ss_pred             HHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence            8999999999886 789999988875

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=99.37  E-value=1.6e-11  Score=135.80  Aligned_cols=202  Identities=14%  Similarity=0.151  Sum_probs=137.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC----------CCCCCCChHHHHHhhcCCCEEEec
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ----------LPIYEPGLEDVVTQCRGRNLFFST   70 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~----------~~~~e~~l~~l~~~~~~~~l~~t~   70 (480)
                      |.+|+|||+|.||..+|..++.+  |++|+++|++++.++...+..          ..+.+...+.     ...+++.++
T Consensus       335 i~~v~ViGaG~MG~gIA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~-----~~~~i~~~~  407 (737)
T TIGR02441       335 VKTLAVLGAGLMGAGIAQVSVDK--GLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDS-----ILSNLTPTL  407 (737)
T ss_pred             ccEEEEECCCHhHHHHHHHHHhC--CCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH-----HHhCeEEeC
Confidence            46899999999999999999998  999999999998876643210          0010111111     125789999


Q ss_pred             CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCC--C
Q 011654           71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSR--E  147 (480)
Q Consensus        71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~--g  147 (480)
                      |+++ +++||+||.||+..           .++  -++++.++.+++++++|+. ++||+++..   ++..+..-..  |
T Consensus       408 ~~~~-~~~aDlViEAv~E~-----------l~~--K~~vf~~l~~~~~~~~ilasNTSsl~i~~---la~~~~~p~r~ig  470 (737)
T TIGR02441       408 DYSG-FKNADMVIEAVFED-----------LSL--KHKVIKEVEAVVPPHCIIASNTSALPIKD---IAAVSSRPEKVIG  470 (737)
T ss_pred             CHHH-hccCCeehhhcccc-----------HHH--HHHHHHHHHhhCCCCcEEEEcCCCCCHHH---HHhhcCCccceEE
Confidence            9964 89999999999863           233  4789999999999999874 445666543   3222221110  1


Q ss_pred             CceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654          148 IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI  227 (480)
Q Consensus       148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i  227 (480)
                      ..|   ++|....+-      .   -||-| .  .+++++++.+..++..+.+ .++.+.|     ...++-|-   +..
T Consensus       471 ~Hf---f~P~~~m~L------v---Evv~g-~--~Ts~~~~~~~~~~~~~lgk-~pv~v~d-----~pGFi~NR---i~~  526 (737)
T TIGR02441       471 MHY---FSPVDKMQL------L---EIITH-D--GTSKDTLASAVAVGLKQGK-VVIVVKD-----GPGFYTTR---CLG  526 (737)
T ss_pred             Eec---cCCcccCce------E---EEeCC-C--CCCHHHHHHHHHHHHHCCC-eEEEECC-----cCCchHHH---HHH
Confidence            111   244333221      1   24433 3  2378999999999999864 4566654     34577774   457


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHh
Q 011654          228 SSVNAMSALCEATGADVTQVSHAI  251 (480)
Q Consensus       228 a~~nE~~~l~~~~Gid~~~v~~~~  251 (480)
                      ++++|+..+.+. |++++++..++
T Consensus       527 ~~~~ea~~lv~e-Gv~~~~ID~a~  549 (737)
T TIGR02441       527 PMLAEVIRLLQE-GVDPKKLDKLT  549 (737)
T ss_pred             HHHHHHHHHHHc-CCCHHHHHHHH
Confidence            899999999875 78999999986

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=99.36  E-value=5.4e-12  Score=116.31  Aligned_cols=170  Identities=18%  Similarity=0.274  Sum_probs=99.1

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCC-----CCCCChH-HHHHhhcCCCEEEecCHHHHh
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLP-----IYEPGLE-DVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~-----~~e~~l~-~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      ||+|||+|.||..+|..++.+  |++|++||++++.++...+....     .....+. +... ...+++++++|++++.
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~--G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~-~~~~~i~~~~dl~~~~   77 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARA--GYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEAD-AALARISFTTDLEEAV   77 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHT--TSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHH-HHHHTEEEESSGGGGC
T ss_pred             CEEEEcCCHHHHHHHHHHHhC--CCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhh-hhhhhcccccCHHHHh
Confidence            799999999999999999998  99999999999876654321000     0000000 0000 1125789999999865


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCCCCceeE--e
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSREIKYQI--L  153 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~~v--~  153 (480)
                       +||+||.|+|..             +..-++.++++.+.+++++++. +.|++++..   +...+....   .|..  .
T Consensus        78 -~adlViEai~E~-------------l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~---la~~~~~p~---R~ig~Hf  137 (180)
T PF02737_consen   78 -DADLVIEAIPED-------------LELKQELFAELDEICPPDTILASNTSSLSISE---LAAALSRPE---RFIGMHF  137 (180)
T ss_dssp             -TESEEEE-S-SS-------------HHHHHHHHHHHHCCS-TTSEEEE--SSS-HHH---HHTTSSTGG---GEEEEEE
T ss_pred             -hhheehhhcccc-------------HHHHHHHHHHHHHHhCCCceEEecCCCCCHHH---HHhccCcCc---eEEEEec
Confidence             999999999852             3344889999999999999875 334555432   222111110   1111  1


Q ss_pred             eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCC
Q 011654          154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTN  208 (480)
Q Consensus       154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~  208 (480)
                      ++|....+-      .   .|+-| ..  +++++++.+..++..+++ .++.+.|
T Consensus       138 ~~P~~~~~l------V---Evv~~-~~--T~~~~~~~~~~~~~~~gk-~pv~v~D  179 (180)
T PF02737_consen  138 FNPPHLMPL------V---EVVPG-PK--TSPETVDRVRALLRSLGK-TPVVVKD  179 (180)
T ss_dssp             -SSTTT--E------E---EEEE--TT--S-HHHHHHHHHHHHHTT--EEEEEES
T ss_pred             ccccccCce------E---EEeCC-CC--CCHHHHHHHHHHHHHCCC-EEEEecC
Confidence            244433221      1   24444 33  379999999999999863 4555543

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.36  E-value=3.3e-11  Score=117.69  Aligned_cols=186  Identities=13%  Similarity=0.162  Sum_probs=121.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIE---VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      |||+|||+|.||.+++..|.+.  |+.   +.++++++++.+.+.+..                 ++.+.+++..+++++
T Consensus         1 m~IgiIG~G~mG~aia~~L~~~--g~~~~~i~v~~r~~~~~~~l~~~~-----------------~~~~~~~~~~~~~~~   61 (258)
T PRK06476          1 MKIGFIGTGAITEAMVTGLLTS--PADVSEIIVSPRNAQIAARLAERF-----------------PKVRIAKDNQAVVDR   61 (258)
T ss_pred             CeEEEECcCHHHHHHHHHHHhC--CCChheEEEECCCHHHHHHHHHHc-----------------CCceEeCCHHHHHHh
Confidence            7999999999999999999987  643   588999999887766420                 124556788887889


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      +|+||+||| |.              .+.++++++.  ++++++||.  +..+-+.+.+.+.+....   . .+-..|..
T Consensus        62 aDvVilav~-p~--------------~~~~vl~~l~--~~~~~~vis--~~ag~~~~~l~~~~~~~~---~-~~r~~P~~  118 (258)
T PRK06476         62 SDVVFLAVR-PQ--------------IAEEVLRALR--FRPGQTVIS--VIAATDRAALLEWIGHDV---K-LVRAIPLP  118 (258)
T ss_pred             CCEEEEEeC-HH--------------HHHHHHHHhc--cCCCCEEEE--ECCCCCHHHHHHHhCCCC---C-EEEECCCC
Confidence            999999998 42              2456666652  456787774  445555667777665321   1 22344532


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhH-----HHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANA-----FLAQRISSVNAM  233 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~-----~~~~~ia~~nE~  233 (480)
                      ..  .   .-... ..+.++      .   +.++++|+.++  ..+.+.+.      |...+.     +.+....++.++
T Consensus       119 ~~--a---~~~g~-t~~~~~------~---~~~~~l~~~lG--~~~~~~~e------~~~d~~~a~~s~~a~~~~~~~~~  175 (258)
T PRK06476        119 FV--A---ERKGV-TAIYPP------D---PFVAALFDALG--TAVECDSE------EEYDLLAAASALMATYFGILETA  175 (258)
T ss_pred             hh--h---hCCCC-eEecCC------H---HHHHHHHHhcC--CcEEECCh------HhccceeehhccHHHHHHHHHHH
Confidence            11  1   00111 223222      2   47889999985  35545433      222222     444455688899


Q ss_pred             HHHHHHhCCCHHHHHHHhc
Q 011654          234 SALCEATGADVTQVSHAIG  252 (480)
Q Consensus       234 ~~l~~~~Gid~~~v~~~~~  252 (480)
                      ..++++.|+|.++..+++.
T Consensus       176 ~~~~~~~Gl~~~~a~~~~~  194 (258)
T PRK06476        176 TGWLEEQGLKRQKARAYLA  194 (258)
T ss_pred             HHHHHHcCCCHHHHHHHHH
Confidence            9999999999988888765

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=99.31  E-value=1.4e-10  Score=129.75  Aligned_cols=170  Identities=15%  Similarity=0.189  Sum_probs=117.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPK--IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      ++||+|||+|.||.++|..|.++  |  ++|++||+++++.+.+.+...                 ....+++..+++++
T Consensus         3 ~~~I~IIG~G~mG~ala~~l~~~--G~~~~V~~~d~~~~~~~~a~~~g~-----------------~~~~~~~~~~~~~~   63 (735)
T PRK14806          3 FGRVVVIGLGLIGGSFAKALRER--GLAREVVAVDRRAKSLELAVSLGV-----------------IDRGEEDLAEAVSG   63 (735)
T ss_pred             CcEEEEEeeCHHHHHHHHHHHhc--CCCCEEEEEECChhHHHHHHHCCC-----------------CCcccCCHHHHhcC
Confidence            36899999999999999999987  6  589999999998877654210                 01134566777889


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      +|+||+|||.               ..+.++++.+.++++++.+|++.+++...+.+.+.+.+....  .. ++..+|..
T Consensus        64 aDvVilavp~---------------~~~~~vl~~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~--~r-~~~~hPm~  125 (735)
T PRK14806         64 ADVIVLAVPV---------------LAMEKVLADLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP--AG-FVPGHPIA  125 (735)
T ss_pred             CCEEEECCCH---------------HHHHHHHHHHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC--Ce-EEecCCcC
Confidence            9999999984               236788889999888889998888888777777766654321  11 35567754


Q ss_pred             cccc----ccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChh
Q 011654          159 LAEG----TAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLW  210 (480)
Q Consensus       159 ~~~G----~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~  210 (480)
                      ..++    .+..+++....+++- .....+++..+.++++|+.++  ..++..+..
T Consensus       126 G~~~~g~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~G--~~~~~~~~~  178 (735)
T PRK14806        126 GSEKSGVHAANADLFRNHKVILT-PLAETDPAALARVDRLWRAVG--ADVLHMDVA  178 (735)
T ss_pred             cCCcchhhhhhhHHhCCCeEEEE-CCCCCCHHHHHHHHHHHHHcC--CEEEEcCHH
Confidence            3332    122234443334332 223335778899999999985  456665544

>PLN02256 arogenate dehydrogenase

Probab=99.31  E-value=7.2e-10  Score=110.44  Aligned_cols=166  Identities=14%  Similarity=0.115  Sum_probs=106.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~a   79 (480)
                      .|+|+|||+|.||..+|..|.+.  |++|++||+++.. +...+-                   ++...++.++++ .++
T Consensus        36 ~~kI~IIG~G~mG~slA~~L~~~--G~~V~~~d~~~~~-~~a~~~-------------------gv~~~~~~~e~~~~~a   93 (304)
T PLN02256         36 KLKIGIVGFGNFGQFLAKTFVKQ--GHTVLATSRSDYS-DIAAEL-------------------GVSFFRDPDDFCEEHP   93 (304)
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECccHH-HHHHHc-------------------CCeeeCCHHHHhhCCC
Confidence            37999999999999999999987  8999999998642 222210                   133456777755 479


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHH-HhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMI-ANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i-~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      |+||+|||..               .+.++++++ .++++++++|++.+++.....+.+.+.+..   +. -++..+|-.
T Consensus        94 DvVilavp~~---------------~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~---~~-~~V~~HPma  154 (304)
T PLN02256         94 DVVLLCTSIL---------------STEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPE---EF-DILCTHPMF  154 (304)
T ss_pred             CEEEEecCHH---------------HHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCCC---CC-eEEecCCCC
Confidence            9999999842               356777887 567888998887666544444444444322   11 256678866


Q ss_pred             ccccccccccCCCCeEEEEeC---CCcchHHHHHHHHHHHhccCCCCeEEeCChhH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGR---ETPEGQKAIQALKDVYAHWVPEDRIITTNLWS  211 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~---~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~  211 (480)
                      ..+... ..+... .+++...   ++.++++..+.++++++.++  .+++.++++.
T Consensus       155 G~e~~~-~~~~~~-~~~~~~~~i~~~~~~~~~~~~l~~l~~~lG--a~v~~~~~ee  206 (304)
T PLN02256        155 GPESGK-GGWAGL-PFVYDKVRIGDEGEREARCERFLDIFEEEG--CRMVEMSCEE  206 (304)
T ss_pred             CCCCCc-cccCCC-eEEEecceecCCCCCHHHHHHHHHHHHHCC--CEEEEeCHHH
Confidence            544221 011111 2323220   02235778899999999984  5777777654

>PRK07680 late competence protein ComER; Validated

Probab=99.29  E-value=2.9e-10  Score=111.99  Aligned_cols=196  Identities=12%  Similarity=0.197  Sum_probs=116.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK----IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      |||+|||+|.||.+++..|.++  |    ++|++||+++++.+.+.+..                 .++..+.+..+++.
T Consensus         1 m~I~iIG~G~mG~ala~~L~~~--g~~~~~~v~v~~r~~~~~~~~~~~~-----------------~g~~~~~~~~~~~~   61 (273)
T PRK07680          1 MNIGFIGTGNMGTILIEAFLES--GAVKPSQLTITNRTPAKAYHIKERY-----------------PGIHVAKTIEEVIS   61 (273)
T ss_pred             CEEEEECccHHHHHHHHHHHHC--CCCCcceEEEECCCHHHHHHHHHHc-----------------CCeEEECCHHHHHH
Confidence            7999999999999999999987  6    47999999998887765410                 13556678877789


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      ++|+||+|||.               ..+.++++++.++++++++|+..+.  .-+.+.+.+.+...      .+-+.|.
T Consensus        62 ~aDiVilav~p---------------~~~~~vl~~l~~~l~~~~~iis~~a--g~~~~~L~~~~~~~------~~r~~p~  118 (273)
T PRK07680         62 QSDLIFICVKP---------------LDIYPLLQKLAPHLTDEHCLVSITS--PISVEQLETLVPCQ------VARIIPS  118 (273)
T ss_pred             hCCEEEEecCH---------------HHHHHHHHHHHhhcCCCCEEEEECC--CCCHHHHHHHcCCC------EEEECCC
Confidence            99999999973               2357788888888888888775542  12345565554321      1122332


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeC-ChhHHHHhhhH-HhHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITT-NLWSAELSKLA-ANAFLAQRISSVNAMSA  235 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~ae~~Kl~-~N~~~~~~ia~~nE~~~  235 (480)
                      .  ++.+..+.   ..++.|..   .+++..+.++++|+.++  ..+... +...+...-.. .=+|....+.   .+..
T Consensus       119 ~--~~~~~~G~---t~~~~g~~---~~~~~~~~~~~ll~~~G--~~~~i~e~~~~~~~~l~gs~pa~~~~~~~---al~~  185 (273)
T PRK07680        119 I--TNRALSGA---SLFTFGSR---CSEEDQQKLERLFSNIS--TPLVIEEDITRVSSDIVSCGPAFFSYLLQ---RFID  185 (273)
T ss_pred             h--HHHHhhcc---EEEeeCCC---CCHHHHHHHHHHHHcCC--CEEEEChHhcchhhhhccchHHHHHHHHH---HHHH
Confidence            1  11111111   12233321   24567789999999985  344443 11111111000 0112222222   2222


Q ss_pred             HHHH-hCCCHHHHHHHhc
Q 011654          236 LCEA-TGADVTQVSHAIG  252 (480)
Q Consensus       236 l~~~-~Gid~~~v~~~~~  252 (480)
                      -+.+ .|++.++..+++.
T Consensus       186 ~~~~~~Gl~~~~a~~~~~  203 (273)
T PRK07680        186 AAVEETNISKEEATTLAS  203 (273)
T ss_pred             HHHHhcCCCHHHHHHHHH
Confidence            2334 8999888776653

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=99.28  E-value=2.4e-10  Score=114.48  Aligned_cols=195  Identities=15%  Similarity=0.167  Sum_probs=127.6

Q ss_pred             hHHHHHHHHHHcCCCCeEEEEeCCHHH-------HHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEecC--H
Q 011654           12 VGGPTMAVIALKCPKIEVAVVDISVSR-------IAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFSTD--I   72 (480)
Q Consensus        12 ~G~~lA~~La~~~~G~~V~~~D~~~~~-------v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t~d--~   72 (480)
                      ||..+|..++.+  |++|+++|++++.       ++...+.          ...+.+...+.     ..++++++++  +
T Consensus         1 MG~giA~~~a~~--G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~-----~~~~i~~~~~~~~   73 (314)
T PRK08269          1 MGQGIALAFAFA--GHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADA-----VLARIAVVARDGA   73 (314)
T ss_pred             CcHHHHHHHHhC--CCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHH-----HHhCeEeecCcch
Confidence            799999999998  9999999999853       2211110          00000111111     1256888765  6


Q ss_pred             HHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeE
Q 011654           73 EKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQI  152 (480)
Q Consensus        73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v  152 (480)
                      .+++++||+||.|||...           +++  +..+.++.+.+++++++.  ||.++-....++..+..         
T Consensus        74 ~~a~~~aD~ViEav~E~~-----------~~K--~~~f~~l~~~~~~~~ila--SntS~~~~~~la~~~~~---------  129 (314)
T PRK08269         74 ADALADADLVFEAVPEVL-----------DAK--REALRWLGRHVDADAIIA--STTSTFLVTDLQRHVAH---------  129 (314)
T ss_pred             HHHhccCCEEEECCcCCH-----------HHH--HHHHHHHHhhCCCCcEEE--EccccCCHHHHHhhcCC---------
Confidence            677899999999998642           333  667888999999998773  44444444455443321         


Q ss_pred             eeCCccccccccccccCCCCe----E-EEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654          153 LSNPEFLAEGTAIQDLFNPDR----V-LIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI  227 (480)
Q Consensus       153 ~~~Pe~~~~G~a~~~~~~~~~----v-viG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i  227 (480)
                         |++..-    .++++|+.    | |+++..  +++++++++.+++..+++ .++++.+...        +....+..
T Consensus       130 ---p~r~~g----~Hf~~Pp~~~~lvEVv~g~~--t~~e~~~~~~~ll~~lGk-~~v~v~d~~G--------fi~nri~~  191 (314)
T PRK08269        130 ---PERFLN----AHWLNPAYLMPLVEVSPSDA--TDPAVVDRLAALLERIGK-VPVVCGPSPG--------YIVPRIQA  191 (314)
T ss_pred             ---cccEEE----EecCCccccCceEEEeCCCC--CCHHHHHHHHHHHHHcCC-cEEEecCCCC--------cchHHHHH
Confidence               221110    12223321    1 345553  378999999999999874 4566665432        24557789


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhcCCC
Q 011654          228 SSVNAMSALCEATGADVTQVSHAIGKDT  255 (480)
Q Consensus       228 a~~nE~~~l~~~~Gid~~~v~~~~~~~~  255 (480)
                      .+++|...++++.++|++++.+++....
T Consensus       192 ~~l~EAl~l~e~g~~~~e~iD~a~~~g~  219 (314)
T PRK08269        192 LAMNEAARMVEEGVASAEDIDKAIRTGF  219 (314)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence            9999999999999999999999987553

>PRK08818 prephenate dehydrogenase; Provisional

Probab=99.25  E-value=1.1e-09  Score=111.27  Aligned_cols=157  Identities=10%  Similarity=0.071  Sum_probs=106.2

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|+|||+ |.||..+|..|.+.. +++|+++|++.+                              ..+++++++++||
T Consensus         5 ~~I~IIGl~GliGgslA~alk~~~-~~~V~g~D~~d~------------------------------~~~~~~~~v~~aD   53 (370)
T PRK08818          5 PVVGIVGSAGAYGRWLARFLRTRM-QLEVIGHDPADP------------------------------GSLDPATLLQRAD   53 (370)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcC-CCEEEEEcCCcc------------------------------ccCCHHHHhcCCC
Confidence            68999999 999999999999753 899999998410                              1235666789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhh---CCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV---SNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~---l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      +||+|||.               +.+.++++++.++   ++++++|++.+++.....+.+   + +..  .. ++..+|-
T Consensus        54 lVilavPv---------------~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK~~i~~~~---~-~~~--~~-fVG~HPM  111 (370)
T PRK08818         54 VLIFSAPI---------------RHTAALIEEYVALAGGRAAGQLWLDVTSIKQAPVAAM---L-ASQ--AE-VVGLHPM  111 (370)
T ss_pred             EEEEeCCH---------------HHHHHHHHHHhhhhcCCCCCeEEEECCCCcHHHHHHH---H-hcC--CC-EEeeCCC
Confidence            99999884               3457778888876   789999998766553333322   2 222  22 5778887


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhH-HHHhhhHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWS-AELSKLAA  219 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-ae~~Kl~~  219 (480)
                      +..+.+   +++....+++- +..  ..+..+.++++++.++  ..+..++++. -+++-+++
T Consensus       112 aG~E~s---~lf~g~~~ilt-p~~--~~~~~~~v~~l~~~~G--a~v~~~~aeeHD~~~A~vS  166 (370)
T PRK08818        112 TAPPKS---PTLKGRVMVVC-EAR--LQHWSPWVQSLCSALQ--AECVYATPEHHDRVMALVQ  166 (370)
T ss_pred             CCCCCC---cccCCCeEEEe-CCC--chhHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHH
Confidence            766543   23444344442 321  3455778999999884  5777777754 34555444

>PLN02712 arogenate dehydrogenase

Probab=99.24  E-value=3.3e-09  Score=116.16  Aligned_cols=163  Identities=13%  Similarity=0.163  Sum_probs=105.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-cCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-EAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-~aD   80 (480)
                      |||+|||+|.||..+|..|.+.  |++|++||++... +...+-                   ++...+++++++. .+|
T Consensus       370 ~kIgIIGlG~mG~slA~~L~~~--G~~V~~~dr~~~~-~~a~~~-------------------Gv~~~~~~~el~~~~aD  427 (667)
T PLN02712        370 LKIAIVGFGNFGQFLAKTMVKQ--GHTVLAYSRSDYS-DEAQKL-------------------GVSYFSDADDLCEEHPE  427 (667)
T ss_pred             CEEEEEecCHHHHHHHHHHHHC--cCEEEEEECChHH-HHHHHc-------------------CCeEeCCHHHHHhcCCC
Confidence            7999999999999999999987  8999999998643 222211                   1345567777665 589


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHh-hCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAN-VSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~-~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      +||+|||..               .+.++++++.. .++++++|++.+++.....+.+.+.+..   +.+ ++..+|.+.
T Consensus       428 vVILavP~~---------------~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~---~~~-~v~~HPm~G  488 (667)
T PLN02712        428 VILLCTSIL---------------STEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ---DFD-ILCTHPMFG  488 (667)
T ss_pred             EEEECCChH---------------HHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC---CCc-eEeeCCCCC
Confidence            999999842               24566777765 5788999998877763333444443332   222 455777655


Q ss_pred             cccc-----cccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhH
Q 011654          160 AEGT-----AIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWS  211 (480)
Q Consensus       160 ~~G~-----a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~  211 (480)
                      .+..     ....++.+  ++++++.  ...+.++.+.++|..++  .+++.++++.
T Consensus       489 ~e~~~~G~~~~~~lf~~--~~v~~~~--~~~~~~~~l~~l~~~lG--a~vv~ms~ee  539 (667)
T PLN02712        489 PESGKNGWNNLAFVFDK--VRIGSDD--RRVSRCDSFLDIFAREG--CRMVEMSCAE  539 (667)
T ss_pred             ccccccchhhhhhhccC--cEeCCCc--chHHHHHHHHHHHHHcC--CEEEEeCHHH
Confidence            4421     11223333  2345431  13455666778999884  5777777664

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=99.22  E-value=1.1e-09  Score=109.18  Aligned_cols=209  Identities=22%  Similarity=0.217  Sum_probs=140.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|+|+|.||+.+|..|+++  |++|+++-|++. ++++++....+.+..- ...     -....+++ .+....+|+
T Consensus         1 mkI~IlGaGAvG~l~g~~L~~~--g~~V~~~~R~~~-~~~l~~~GL~i~~~~~-~~~-----~~~~~~~~-~~~~~~~Dl   70 (307)
T COG1893           1 MKILILGAGAIGSLLGARLAKA--GHDVTLLVRSRR-LEALKKKGLRIEDEGG-NFT-----TPVVAATD-AEALGPADL   70 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC--CCeEEEEecHHH-HHHHHhCCeEEecCCC-ccc-----cccccccC-hhhcCCCCE
Confidence            8999999999999999999998  888999888776 8899886554443221 000     01122233 334679999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCcee-EeeCCcccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQ-ILSNPEFLA  160 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~-v~~~Pe~~~  160 (480)
                      ||++|++..               +.++++.+.+.+++.+.|+. -....|..+.+.+...+...  =.. +..+-.+-.
T Consensus        71 viv~vKa~q---------------~~~al~~l~~~~~~~t~vl~-lqNG~g~~e~l~~~~~~~~i--l~G~~~~~a~~~~  132 (307)
T COG1893          71 VIVTVKAYQ---------------LEEALPSLAPLLGPNTVVLF-LQNGLGHEEELRKILPKETV--LGGVTTHGAVREG  132 (307)
T ss_pred             EEEEecccc---------------HHHHHHHhhhcCCCCcEEEE-EeCCCcHHHHHHHhCCcceE--EEEEeeeeeEecC
Confidence            999998642               46889999999998886653 34566777766665554310  011 222334445


Q ss_pred             ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhH-------------------
Q 011654          161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANA-------------------  221 (480)
Q Consensus       161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~-------------------  221 (480)
                      +|...+.-  ...+.+|..... .++..+.+.++|+... -...+..|+....|.|++-|+                   
T Consensus       133 ~g~v~~~g--~g~~~ig~~~~~-~~~~~~~i~~~~~~a~-~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~  208 (307)
T COG1893         133 PGHVVHTG--LGDTVIGELRGG-RDELVKALAELFKEAG-LEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLEN  208 (307)
T ss_pred             CceEEEec--CCcEEEccCCCC-chHHHHHHHHHHHhCC-CCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcC
Confidence            56554332  124556755321 2367778888887653 233455799999999999885                   


Q ss_pred             --HHHHHHHHHHHHHHHHHHhCC
Q 011654          222 --FLAQRISSVNAMSALCEATGA  242 (480)
Q Consensus       222 --~~~~~ia~~nE~~~l~~~~Gi  242 (480)
                        .+.+..+.+.|...++.+.|+
T Consensus       209 ~~~~~l~~~~~~E~~~v~~~~g~  231 (307)
T COG1893         209 PEARALIRALVAEVVAVARAEGV  231 (307)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccC
Confidence              666778899999999999984

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=99.22  E-value=2.6e-10  Score=111.06  Aligned_cols=207  Identities=12%  Similarity=0.156  Sum_probs=149.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH---hcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH---VAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a---~~~   78 (480)
                      +.|+.|||+.||..++.+.+++  |+.|.+|+|..++++.+.+....              ...+.-..++++-   ++.
T Consensus         7 ~digLiGLaVMGqnLiLN~~d~--Gf~v~~yNRT~skvD~flaneak--------------~~~i~ga~S~ed~v~klk~   70 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNIADK--GFTVCAYNRTTSKVDEFLANEAK--------------GTKIIGAYSLEDFVSKLKK   70 (487)
T ss_pred             cchhhhhHhhhhhhhhhccccc--CceEEEeccchHhHHHHHHHhhc--------------CCcccCCCCHHHHHHhcCC
Confidence            5699999999999999999999  99999999999999887643111              0011112333332   456


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC-ccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV-PVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      ...|++.|...              +++...++++.+++.+|.+||+-... .+.|.++..+.. +.+   -.+|..+-.
T Consensus        71 PR~iillvkAG--------------~pVD~~I~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~-k~G---ilfvG~GVS  132 (487)
T KOG2653|consen   71 PRVIILLVKAG--------------APVDQFIEELVPYLEKGDIIIDGGNSEYQDTERRCRELA-KKG---ILFVGSGVS  132 (487)
T ss_pred             CcEEEEEeeCC--------------CcHHHHHHHHHhhcCCCCEEEeCCcccCcchHHHHHHHH-hcC---cEEEecCcc
Confidence            77888888653              23566789999999999999986433 556777765443 332   123433333


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCC----CC--eEEeCChhHHHHhhhHHhHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVP----ED--RIITTNLWSAELSKLAANAFLAQRISSVN  231 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~----~~--~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n  231 (480)
                      -..+|.     +..|.+|.||.     +++...++.+|..+.-    +.  ..++++-+++..+|+++|..-.--+.++.
T Consensus       133 GGEEGA-----R~GPSlMpGg~-----~~Awp~ik~ifq~iaakv~~~epCc~wvG~~GaGhfVKMVHNGIEYGDMqLI~  202 (487)
T KOG2653|consen  133 GGEEGA-----RYGPSLMPGGS-----KEAWPHIKDIFQKIAAKVSDGEPCCDWVGEGGAGHFVKMVHNGIEYGDMQLIC  202 (487)
T ss_pred             Cccccc-----ccCCccCCCCC-----hHHHHHHHHHHHHHHHHhcCCCCCeeeecCCCCccchhhhccCcccchHHHHH
Confidence            333343     45567888986     8899999999988641    12  24667888999999999999988999999


Q ss_pred             HHHHHHHH-hCCCHHHHHHHhc
Q 011654          232 AMSALCEA-TGADVTQVSHAIG  252 (480)
Q Consensus       232 E~~~l~~~-~Gid~~~v~~~~~  252 (480)
                      |...+... +|++-+++.+++.
T Consensus       203 EaY~vlk~~~gls~~eia~vF~  224 (487)
T KOG2653|consen  203 EAYDVLKSVLGLSNDEIAEVFD  224 (487)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHH
Confidence            99999999 7898888877764

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.18  E-value=1.2e-09  Score=107.92  Aligned_cols=199  Identities=10%  Similarity=0.046  Sum_probs=114.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCH-HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPK----IEVAVVDISV-SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~-~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a   75 (480)
                      ||||+|||+|.||.++|..|.++  |    ++|++|++++ ++.+.+.+.                 .+....+++..++
T Consensus         1 m~~I~iIG~G~mG~ala~~L~~~--g~~~~~~V~~~~r~~~~~~~~l~~~-----------------~~~~~~~~~~~e~   61 (277)
T PRK06928          1 MEKIGFIGYGSMADMIATKLLET--EVATPEEIILYSSSKNEHFNQLYDK-----------------YPTVELADNEAEI   61 (277)
T ss_pred             CCEEEEECccHHHHHHHHHHHHC--CCCCcccEEEEeCCcHHHHHHHHHH-----------------cCCeEEeCCHHHH
Confidence            78999999999999999999987  6    7899999864 445544331                 0123456777777


Q ss_pred             hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch-HHHHHHHHHhcCCCCceeEee
Q 011654           76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT-AEAIEKILTHNSREIKYQILS  154 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt-~~~l~~~l~~~~~g~~~~v~~  154 (480)
                      +.++|+||+|||.               ..+.++++++.++++++++||..   ..|. .+.|++.+...    .  +  
T Consensus        62 ~~~aDvVilavpp---------------~~~~~vl~~l~~~l~~~~~ivS~---~aGi~~~~l~~~~~~~----~--v--  115 (277)
T PRK06928         62 FTKCDHSFICVPP---------------LAVLPLLKDCAPVLTPDRHVVSI---AAGVSLDDLLEITPGL----Q--V--  115 (277)
T ss_pred             HhhCCEEEEecCH---------------HHHHHHHHHHHhhcCCCCEEEEE---CCCCCHHHHHHHcCCC----C--E--
Confidence            8899999999983               23578888888888878766632   2232 33555554321    1  1  


Q ss_pred             CCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHH
Q 011654          155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMS  234 (480)
Q Consensus       155 ~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~  234 (480)
                        .|..|..+..-- .....+..+  +..+++..+.++.+|+.++.  .+.+.. ..-...=-+.-+--+....++..+.
T Consensus       116 --vR~MPN~~~~~g-~g~t~~~~~--~~~~~~~~~~v~~l~~~~G~--~~~v~E-~~~d~~tal~gsgPA~~~~~~~al~  187 (277)
T PRK06928        116 --SRLIPSLTSAVG-VGTSLVAHA--ETVNEANKSRLEETLSHFSH--VMTIRE-ENMDIASNLTSSSPGFIAAIFEEFA  187 (277)
T ss_pred             --EEEeCccHHHHh-hhcEEEecC--CCCCHHHHHHHHHHHHhCCC--EEEEch-hhCceeeeeecCHHHHHHHHHHHHH
Confidence              122222111100 011122222  22356778899999999853  444321 1000000011111222233444455


Q ss_pred             HHHHHh-CCCHHHHHHHhc
Q 011654          235 ALCEAT-GADVTQVSHAIG  252 (480)
Q Consensus       235 ~l~~~~-Gid~~~v~~~~~  252 (480)
                      .-+.+. |++.++..+++.
T Consensus       188 ~a~~~~ggl~~~~a~~l~~  206 (277)
T PRK06928        188 EAAVRNSSLSDEEAFQFLN  206 (277)
T ss_pred             HHHHHhCCCCHHHHHHHHH
Confidence            556666 687776666553

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=99.18  E-value=5.3e-10  Score=111.83  Aligned_cols=207  Identities=14%  Similarity=0.101  Sum_probs=131.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC-CCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG-DQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|.||+.+|..|++.  |++|+++++.+++++++++ +...+...+-....      .... .+.++ ...+|
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~--G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~------~~~~-~~~~~-~~~~D   72 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARA--GLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLY------AIPA-ETADA-AEPIH   72 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhC--CCCeEEEEechHHHHHHhhcCCeEEeeCCcceee------ccCC-CCccc-ccccC
Confidence            8999999999999999999998  9999999999889999875 32332221110000      0111 11122 45789


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEee-CCccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILS-NPEFL  159 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~Pe~~  159 (480)
                      +||+||++.            +   +.++++.+.+++.+++.|+. -....+..+.+.+.+.+...  -..+++ +-.+.
T Consensus        73 ~viv~vK~~------------~---~~~al~~l~~~l~~~t~vv~-lQNGv~~~e~l~~~~~~~~v--~~g~~~~ga~~~  134 (305)
T PRK05708         73 RLLLACKAY------------D---AEPAVASLAHRLAPGAELLL-LQNGLGSQDAVAARVPHARC--IFASSTEGAFRD  134 (305)
T ss_pred             EEEEECCHH------------h---HHHHHHHHHhhCCCCCEEEE-EeCCCCCHHHHHHhCCCCcE--EEEEeeeceecC
Confidence            999999853            2   46788899999988886653 34455665666665543210  011222 33444


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHH-----------------
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAF-----------------  222 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~-----------------  222 (480)
                      .||...+.-.  ..+.+|...    .+..+.+.++|....- ...+..|+...-|.|++-|+-                 
T Consensus       135 ~pg~v~~~~~--g~~~~G~~~----~~~~~~l~~~l~~ag~-~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~  207 (305)
T PRK05708        135 GDWRVVFAGH--GFTWLGDPR----NPTAPAWLDDLREAGI-PHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLE  207 (305)
T ss_pred             CCCEEEEece--EEEEEcCCC----CcchHHHHHHHHhcCC-CCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhc
Confidence            5666544322  124467432    2345667777775421 233456899999999998861                 


Q ss_pred             -HHHHHHHHHHHHHHHHHhCCC
Q 011654          223 -LAQRISSVNAMSALCEATGAD  243 (480)
Q Consensus       223 -~~~~ia~~nE~~~l~~~~Gid  243 (480)
                       ......++.|+..++++.|++
T Consensus       208 ~~~~~~~l~~E~~~va~a~G~~  229 (305)
T PRK05708        208 HAQEVAALCAELSELLRRCGQP  229 (305)
T ss_pred             CHHHHHHHHHHHHHHHHHcCCC
Confidence             123457789999999999875

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=99.18  E-value=2.6e-09  Score=103.32  Aligned_cols=196  Identities=16%  Similarity=0.152  Sum_probs=116.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcC-CCCe-EEEEeC-CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKC-PKIE-VAVVDI-SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~-~G~~-V~~~D~-~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      |||+|||+|.||.+++..|.+++ ...+ ++++++ ++++.+.+.+.                  -++..+++.++++++
T Consensus         5 ~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~   66 (245)
T PRK07634          5 HRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQAR------------------YNVSTTTDWKQHVTS   66 (245)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHH------------------cCcEEeCChHHHHhc
Confidence            57999999999999999998761 1123 778887 57777766532                  123456788888899


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec-CCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS-TVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      +|+||+|+|..               .+.++++++.++++ +++||..+ .+..   +.|.+.+...   .. .+-..|.
T Consensus        67 ~DiViiavp~~---------------~~~~v~~~l~~~~~-~~~vis~~~gi~~---~~l~~~~~~~---~~-v~r~~Pn  123 (245)
T PRK07634         67 VDTIVLAMPPS---------------AHEELLAELSPLLS-NQLVVTVAAGIGP---SYLEERLPKG---TP-VAWIMPN  123 (245)
T ss_pred             CCEEEEecCHH---------------HHHHHHHHHHhhcc-CCEEEEECCCCCH---HHHHHHcCCC---Ce-EEEECCc
Confidence            99999999852               24677788887766 56665432 2222   3344444321   11 2335664


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHh---HHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAAN---AFLAQRISSVNAMS  234 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N---~~~~~~ia~~nE~~  234 (480)
                      ...+-.     ...+.+..+.   ..+++..+.++++|+.++.  .+... .  .+ ...+.-   +--+....++..+.
T Consensus       124 ~a~~v~-----~g~~~~~~~~---~~~~~~~~~v~~lf~~~G~--~~~~~-e--~~-~~~~~a~~gs~pa~~~~~~~a~~  189 (245)
T PRK07634        124 TAAEIG-----KSISLYTMGQ---SVNETHKETLQLILKGIGT--SQLCT-E--EE-VHQLTAVTGSAPAFLYYFAESLI  189 (245)
T ss_pred             HHHHHh-----cCCeEEeeCC---CCCHHHHHHHHHHHHhCCC--EEEEC-H--HH-cchHHhhhcchHHHHHHHHHHHH
Confidence            432111     1111222221   2257888999999999853  44442 1  11 111111   11112234555566


Q ss_pred             HHHHHhCCCHHHHHHHhc
Q 011654          235 ALCEATGADVTQVSHAIG  252 (480)
Q Consensus       235 ~l~~~~Gid~~~v~~~~~  252 (480)
                      ..+.+.|++.++..+++.
T Consensus       190 ~~~~~~Gl~~~~a~~~~~  207 (245)
T PRK07634        190 EATKSYGVDEETAKHLVI  207 (245)
T ss_pred             HHHHHcCCCHHHHHHHHH
Confidence            678888999988777765

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=99.15  E-value=2.9e-09  Score=103.03  Aligned_cols=199  Identities=19%  Similarity=0.240  Sum_probs=122.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKC--PKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      ||||+|||+|.||.+|+..|.+++  +..+|++.++++++.+.+.+.-                 +.. .+++..+++.+
T Consensus         1 ~~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~-----------------g~~-~~~~~~~~~~~   62 (266)
T COG0345           1 MMKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEY-----------------GVV-TTTDNQEAVEE   62 (266)
T ss_pred             CceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHc-----------------CCc-ccCcHHHHHhh
Confidence            689999999999999999999982  1279999999999987555420                 111 26777788899


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEee-CCc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILS-NPE  157 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~Pe  157 (480)
                      +|+||+||+ |.              .+.+++.++.+ ..++++||  |-...-+.+.+.+.+....   -..+.- -|.
T Consensus        63 advv~LavK-Pq--------------~~~~vl~~l~~-~~~~~lvI--SiaAGv~~~~l~~~l~~~~---vvR~MPNt~a  121 (266)
T COG0345          63 ADVVFLAVK-PQ--------------DLEEVLSKLKP-LTKDKLVI--SIAAGVSIETLERLLGGLR---VVRVMPNTPA  121 (266)
T ss_pred             CCEEEEEeC-hH--------------hHHHHHHHhhc-ccCCCEEE--EEeCCCCHHHHHHHcCCCc---eEEeCCChHH
Confidence            999999997 42              25778888887 67788887  3223333455666665211   011111 112


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      ..+.|.         ..+..+.  ..+++..+.+.++|+.++  ..+.+..-.---++-+. -.-=+....++..+..-+
T Consensus       122 ~vg~g~---------t~i~~~~--~~~~~~~~~v~~l~~~~G--~v~~v~E~~~da~Tais-GSgPAyv~~~iEal~~ag  187 (266)
T COG0345         122 LVGAGV---------TAISANA--NVSEEDKAFVEALLSAVG--KVVEVEESLMDAVTALS-GSGPAYVFLFIEALADAG  187 (266)
T ss_pred             HHcCcc---------eeeecCc--cCCHHHHHHHHHHHHhcC--CeEEechHHhhHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence            222221         1222222  225778889999999985  34544310000011111 111122344666777788


Q ss_pred             HHhCCCHHHHHHHhc
Q 011654          238 EATGADVTQVSHAIG  252 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~  252 (480)
                      .+.|++.++..+++.
T Consensus       188 v~~Gl~~~~A~~l~~  202 (266)
T COG0345         188 VRLGLPREEARELAA  202 (266)
T ss_pred             HHcCCCHHHHHHHHH
Confidence            889999988887664

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=99.12  E-value=2.9e-10  Score=93.52  Aligned_cols=87  Identities=25%  Similarity=0.272  Sum_probs=68.5

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCC---CeEEEE-eCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec-CHHHHhc
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPK---IEVAVV-DISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST-DIEKHVA   77 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G---~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~-d~~~a~~   77 (480)
                      ||+|||+|.||.+++..|.++  |   ++|+.+ ++++++.+.+.+.                  ....++. +..++++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~--g~~~~~v~~~~~r~~~~~~~~~~~------------------~~~~~~~~~~~~~~~   60 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLAS--GIKPHEVIIVSSRSPEKAAELAKE------------------YGVQATADDNEEAAQ   60 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHT--TS-GGEEEEEEESSHHHHHHHHHH------------------CTTEEESEEHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCCceeEEeeccCcHHHHHHHHHh------------------hccccccCChHHhhc
Confidence            799999999999999999998  8   899955 9999999988752                  1233444 7888899


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEE
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVE  125 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~  125 (480)
                      ++|+||+|||..               .+.++++++ ....++++||.
T Consensus        61 ~advvilav~p~---------------~~~~v~~~i-~~~~~~~~vis   92 (96)
T PF03807_consen   61 EADVVILAVKPQ---------------QLPEVLSEI-PHLLKGKLVIS   92 (96)
T ss_dssp             HTSEEEE-S-GG---------------GHHHHHHHH-HHHHTTSEEEE
T ss_pred             cCCEEEEEECHH---------------HHHHHHHHH-hhccCCCEEEE
Confidence            999999999832               246778888 66777888875

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=99.11  E-value=3.4e-10  Score=104.17  Aligned_cols=213  Identities=17%  Similarity=0.217  Sum_probs=141.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC-----------CCCCCCChHHHHHhhcCCCEEEe
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ-----------LPIYEPGLEDVVTQCRGRNLFFS   69 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-----------~~~~e~~l~~l~~~~~~~~l~~t   69 (480)
                      |.+|+|||.|.||..+|+.-+..  |++|+++|.|++.+++..++.           ..-....+++++... ..+++.+
T Consensus        11 ~~~V~ivGaG~MGSGIAQv~a~s--g~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~-l~ri~~~   87 (298)
T KOG2304|consen   11 IKNVAIVGAGQMGSGIAQVAATS--GLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDT-LDRIKTS   87 (298)
T ss_pred             ccceEEEcccccchhHHHHHHhc--CCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHH-HHHHHHc
Confidence            35799999999999999999988  999999999998766544321           111122345554421 1356778


Q ss_pred             cCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCC--C
Q 011654           70 TDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR--E  147 (480)
Q Consensus        70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g  147 (480)
                      ++.+++++++|+||.++-.           +.|++  +..+++|...+++.+++.. .|.+...+ .+...++....  |
T Consensus        88 tnv~~~v~dadliiEAivE-----------n~diK--~~lF~~l~~~ak~~~il~t-NTSSl~lt-~ia~~~~~~srf~G  152 (298)
T KOG2304|consen   88 TNVSDAVSDADLIIEAIVE-----------NLDIK--RKLFKDLDKIAKSSTILAT-NTSSLSLT-DIASATQRPSRFAG  152 (298)
T ss_pred             CCHHHhhhhhHHHHHHHHH-----------hHHHH--HHHHHHHHhhcccceEEee-cccceeHH-HHHhhccChhhhce
Confidence            8999999999999999754           34554  6788899998888887652 22222222 23233322211  3


Q ss_pred             CceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654          148 IKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI  227 (480)
Q Consensus       148 ~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i  227 (480)
                      ..|   ++|....      .+.   .|+ -+++  ++++++..+..+-..+++ .++-+.|     ...++-|   .+.+
T Consensus       153 lHF---fNPvPvM------KLv---EVi-r~~~--TS~eTf~~l~~f~k~~gK-ttVackD-----tpGFIVN---RlLi  208 (298)
T KOG2304|consen  153 LHF---FNPVPVM------KLV---EVI-RTDD--TSDETFNALVDFGKAVGK-TTVACKD-----TPGFIVN---RLLI  208 (298)
T ss_pred             eec---cCCchhH------HHh---hhh-cCCC--CCHHHHHHHHHHHHHhCC-CceeecC-----CCchhhh---HHHH
Confidence            333   3554322      111   233 3333  368899999998888864 4555544     2346677   4559


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhcCCC
Q 011654          228 SSVNAMSALCEATGADVTQVSHAIGKDT  255 (480)
Q Consensus       228 a~~nE~~~l~~~~Gid~~~v~~~~~~~~  255 (480)
                      -+++|..++.++..+..+++..++..+.
T Consensus       209 Pyl~ea~r~yerGdAskeDIDtaMklGa  236 (298)
T KOG2304|consen  209 PYLMEAIRMYERGDASKEDIDTAMKLGA  236 (298)
T ss_pred             HHHHHHHHHHHhcCCcHhhHHHHHhccC
Confidence            9999999999999999999999998664

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=99.10  E-value=7.3e-09  Score=101.29  Aligned_cols=193  Identities=11%  Similarity=0.062  Sum_probs=114.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKC--PKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|||+|.||.+++..|.+++  ...+++++|+++++.                         ....+.+..+++.++
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~   58 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT-------------------------PFVYLQSNEELAKTC   58 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC-------------------------CeEEeCChHHHHHhC
Confidence            79999999999999999999862  013599999876531                         122345667777899


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      |+||+|||.               ..+.++++++.++++++.+|.+.+++...+   +...+....   . .+     |.
T Consensus        59 D~Vilavkp---------------~~~~~vl~~i~~~l~~~~iIS~~aGi~~~~---l~~~~~~~~---~-vv-----r~  111 (260)
T PTZ00431         59 DIIVLAVKP---------------DLAGKVLLEIKPYLGSKLLISICGGLNLKT---LEEMVGVEA---K-IV-----RV  111 (260)
T ss_pred             CEEEEEeCH---------------HHHHHHHHHHHhhccCCEEEEEeCCccHHH---HHHHcCCCC---e-EE-----EE
Confidence            999999873               236788888888877655655555555433   333332110   1 11     33


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA  239 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~  239 (480)
                      .|++... +.+. ..++.. ....+++..+.++++|+.++  ..+.+. -..-...=-+.-+--+....++..+...+.+
T Consensus       112 mPn~p~~-~g~g-~t~i~~-~~~~~~~~~~~v~~l~~~~G--~~~~v~-E~~~d~~ta~~gsgPA~~~~~~~al~~~~v~  185 (260)
T PTZ00431        112 MPNTPSL-VGQG-SLVFCA-NNNVDSTDKKKVIDIFSACG--IIQEIK-EKDMDIATAISGCGPAYVFLFIESLIDAGVK  185 (260)
T ss_pred             CCCchhH-hcce-eEEEEe-CCCCCHHHHHHHHHHHHhCC--cEEEEC-hHHcchhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence            3433311 1111 122332 22335677889999999985  344442 1111111111111122334455666777888


Q ss_pred             hCCCHHHHHHHhc
Q 011654          240 TGADVTQVSHAIG  252 (480)
Q Consensus       240 ~Gid~~~v~~~~~  252 (480)
                      .|++.++..+++.
T Consensus       186 ~Gl~~~~a~~l~~  198 (260)
T PTZ00431        186 NGLNRDVSKNLVL  198 (260)
T ss_pred             cCCCHHHHHHHHH
Confidence            8999888877664

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=99.08  E-value=2.8e-08  Score=97.03  Aligned_cols=178  Identities=18%  Similarity=0.184  Sum_probs=111.0

Q ss_pred             HHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEEEEeccCCCCcCCC
Q 011654           16 TMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGL   95 (480)
Q Consensus        16 lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~   95 (480)
                      +|..|.++++.++|+++|++++..+...+.+.                 .-...++ .++++++|+||+|||.       
T Consensus         1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~-----------------~~~~~~~-~~~~~~~DlvvlavP~-------   55 (258)
T PF02153_consen    1 IALALRKAGPDVEVYGYDRDPETLEAALELGI-----------------IDEASTD-IEAVEDADLVVLAVPV-------   55 (258)
T ss_dssp             HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTS-----------------SSEEESH-HHHGGCCSEEEE-S-H-------
T ss_pred             ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCC-----------------eeeccCC-HhHhcCCCEEEEcCCH-------
Confidence            57788888444899999999998877643210                 0123344 4568999999999874       


Q ss_pred             CCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEee----CCccccccccccccCCC
Q 011654           96 GAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILS----NPEFLAEGTAIQDLFNP  171 (480)
Q Consensus        96 ~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~----~Pe~~~~G~a~~~~~~~  171 (480)
                              +.+.++++++.++++++++|++.+++.....+.+.+.+...   .. ++..    +||..++..+..+++..
T Consensus        56 --------~~~~~~l~~~~~~~~~~~iv~Dv~SvK~~~~~~~~~~~~~~---~~-~v~~HPM~G~e~~G~~~a~~~lf~g  123 (258)
T PF02153_consen   56 --------SAIEDVLEEIAPYLKPGAIVTDVGSVKAPIVEAMERLLPEG---VR-FVGGHPMAGPEKSGPEAADADLFEG  123 (258)
T ss_dssp             --------HHHHHHHHHHHCGS-TTSEEEE--S-CHHHHHHHHHHHTSS---GE-EEEEEESCSTSSSSGGG-TTTTTTT
T ss_pred             --------HHHHHHHHHhhhhcCCCcEEEEeCCCCHHHHHHHHHhcCcc---cc-eeecCCCCCCccccchhhcccccCC
Confidence                    35788999999999999999988877666555565555421   11 3444    55666666666777776


Q ss_pred             CeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChh-HHHHhhhHHhHHHHHHHHHHHHH
Q 011654          172 DRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLW-SAELSKLAANAFLAQRISSVNAM  233 (480)
Q Consensus       172 ~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~N~~~~~~ia~~nE~  233 (480)
                      ..+++- +.+.++++.++.+.++++.++  .++..++++ .-+++-+++-.-..+..++++.+
T Consensus       124 ~~~il~-p~~~~~~~~~~~~~~l~~~~G--a~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~  183 (258)
T PF02153_consen  124 RNWILC-PGEDTDPEALELVEELWEALG--ARVVEMDAEEHDRIMAYVSHLPHLLASALANTL  183 (258)
T ss_dssp             SEEEEE-ECTTS-HHHHHHHHHHHHHCT---EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             CeEEEe-CCCCChHHHHHHHHHHHHHCC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666553 434446788999999999884  466666664 34555566555555555555533

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=99.06  E-value=6.9e-09  Score=98.81  Aligned_cols=99  Identities=15%  Similarity=0.146  Sum_probs=69.6

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCC-CCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLP-IYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~-~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+||| +|.||.++|..|+++  ||+|+++++++++.+.++..... +...+.        ..++.. ++..++++++
T Consensus         1 MkI~IIGG~G~mG~ala~~L~~~--G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~--------~~~~~~-~~~~ea~~~a   69 (219)
T TIGR01915         1 MKIAVLGGTGDQGKGLALRLAKA--GNKIIIGSRDLEKAEEAAAKALEELGHGGS--------DIKVTG-ADNAEAAKRA   69 (219)
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhC--CCEEEEEEcCHHHHHHHHHHHHhhccccCC--------CceEEE-eChHHHHhcC
Confidence            8999997 899999999999998  99999999999998877642100 000000        011233 3456678999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      |+||+|||..               .+.++++++.+.+. +++||+.+
T Consensus        70 DvVilavp~~---------------~~~~~l~~l~~~l~-~~vvI~~~  101 (219)
T TIGR01915        70 DVVILAVPWD---------------HVLKTLESLRDELS-GKLVISPV  101 (219)
T ss_pred             CEEEEECCHH---------------HHHHHHHHHHHhcc-CCEEEEec
Confidence            9999999852               35667777777665 47676543

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=98.98  E-value=2.7e-09  Score=106.51  Aligned_cols=120  Identities=23%  Similarity=0.290  Sum_probs=83.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|+||..+|..++.+  |+ +|+++|++++..+...   .++++++...    ....++++++|+++ +++||
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~--g~~~VvlvDi~~~l~~g~a---~d~~~~~~~~----~~~~~i~~t~d~~~-~~~aD   71 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEK--ELADLVLLDVVEGIPQGKA---LDMYEASPVG----GFDTKVTGTNNYAD-TANSD   71 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCCChhHHHH---Hhhhhhhhcc----CCCcEEEecCCHHH-hCCCC
Confidence            7999999999999999999987  65 8999999766433111   1122222211    11246888899987 89999


Q ss_pred             EEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      +||+|+++|...+.   ++    ..|++.++++.++|.++.+...+|+  -|.|....-.
T Consensus        72 iVIitag~p~~~~~---sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv--~tNP~di~t~  126 (305)
T TIGR01763        72 IVVITAGLPRKPGM---SREDLLSMNAGIVREVTGRIMEHSPNPIIVV--VSNPLDAMTY  126 (305)
T ss_pred             EEEEcCCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE--ecCcHHHHHH
Confidence            99999999875421   10    1577889999999999875444333  3567665433

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR00745 apbA_panE 2-dehydropantoate 2-reductase

Probab=98.97  E-value=2.6e-08  Score=98.76  Aligned_cols=201  Identities=20%  Similarity=0.170  Sum_probs=130.7

Q ss_pred             hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEEEEeccCCC
Q 011654           11 YVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPT   90 (480)
Q Consensus        11 ~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~   90 (480)
                      .||+.+|..|+++  |++|++++++ ++.+.+++.+..+..++.+ .  .  .....+++++++ ...+|+||+||++. 
T Consensus         1 aiG~~~a~~L~~~--G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~-~--~--~~~~~~~~~~~~-~~~~D~iiv~vKs~-   70 (293)
T TIGR00745         1 AVGSLYGAYLARA--GHDVTLLARG-EQLEALNQEGLRIVSLGGE-F--Q--FRPVSAATSPEE-LPPADLVIITVKAY-   70 (293)
T ss_pred             CchHHHHHHHHhC--CCcEEEEecH-HHHHHHHHCCcEEEecCCc-E--E--EcccccccChhh-cCCCCEEEEeccch-
Confidence            3799999999998  9999999997 7788888654444322211 0  0  002345566665 67899999999863 


Q ss_pred             CcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEee-CCccccccccccccC
Q 011654           91 KTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILS-NPEFLAEGTAIQDLF  169 (480)
Q Consensus        91 ~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~Pe~~~~G~a~~~~~  169 (480)
                                    .+.++++.+.+++.++++|+. .....|..+.+.+.+.+...  -..+.+ +-.+.+||...+.  
T Consensus        71 --------------~~~~~l~~l~~~l~~~~~iv~-~qNG~g~~~~l~~~~~~~~v--~~g~~~~~~~~~~pg~v~~~--  131 (293)
T TIGR00745        71 --------------QTEEAAALLLPLIGKNTKVLF-LQNGLGHEERLRELLPARRI--LGGVVTHGAVREEPGVVHHA--  131 (293)
T ss_pred             --------------hHHHHHHHhHhhcCCCCEEEE-ccCCCCCHHHHHHHhCccCE--EEEEEEEeeEEcCCcEEEEe--
Confidence                          247788899999988887764 44455666666665543210  011222 2233455644333  


Q ss_pred             CCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhH---------------------HHHHHHH
Q 011654          170 NPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANA---------------------FLAQRIS  228 (480)
Q Consensus       170 ~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~---------------------~~~~~ia  228 (480)
                      ...++.+|..+..  .+..+.+.++|..... ......|+....|.|++.|+                     .+.+..+
T Consensus       132 ~~~~~~iG~~~~~--~~~~~~l~~~l~~~~~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~  208 (293)
T TIGR00745       132 GLGATKIGDYVGE--NEAVEALAELLNEAGI-PAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRR  208 (293)
T ss_pred             ccccEEEecCCCc--hHHHHHHHHHHHhCCC-CCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHH
Confidence            2335677865321  2455667777776432 23456799999999999885                     3456667


Q ss_pred             HHHHHHHHHHHhCCC
Q 011654          229 SVNAMSALCEATGAD  243 (480)
Q Consensus       229 ~~nE~~~l~~~~Gid  243 (480)
                      .++|+..++++.|++
T Consensus       209 ~~~E~~~v~~a~G~~  223 (293)
T TIGR00745       209 LMDEVVRVARAEGVD  223 (293)
T ss_pred             HHHHHHHHHHhCCCC
Confidence            899999999999975

This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH

>KOG2305 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=98.96  E-value=5.4e-09  Score=96.33  Aligned_cols=208  Identities=15%  Similarity=0.174  Sum_probs=132.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCC---------EEEecC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRN---------LFFSTD   71 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~---------l~~t~d   71 (480)
                      -||+|+|.|.+|..+|..||..  ||+|..||+.++.+....+..    ++.+..+-++ ...|+         +..|++
T Consensus         4 ~ki~ivgSgl~g~~WAmlFAs~--GyqVqlYDI~e~Ql~~ALen~----~Kel~~Lee~g~lrGnlsa~eqla~is~t~~   77 (313)
T KOG2305|consen    4 GKIAIVGSGLVGSSWAMLFASS--GYQVQLYDILEKQLQTALENV----EKELRKLEEHGLLRGNLSADEQLALISGTTS   77 (313)
T ss_pred             cceeEeecccccchHHHHHhcc--CceEEEeeccHHHHHHHHHHH----HHHHHHHHHhhhhccCccHHHHHHHHhCCcc
Confidence            4899999999999999999998  999999999987655332210    0111111110 11122         346889


Q ss_pred             HHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe-cCCccch-HHHHHHHHHhcCCCCc
Q 011654           72 IEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK-STVPVKT-AEAIEKILTHNSREIK  149 (480)
Q Consensus        72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt-~~~l~~~l~~~~~g~~  149 (480)
                      +.|+++++=.|-.|||...           ++  -+..++++...+.+.+|+-.+ ||+.|+- +..+   ..+     .
T Consensus        78 l~E~vk~Ai~iQEcvpE~L-----------~l--kk~ly~qlD~i~d~~tIlaSSTSt~mpS~~s~gL---~~k-----~  136 (313)
T KOG2305|consen   78 LNELVKGAIHIQECVPEDL-----------NL--KKQLYKQLDEIADPTTILASSTSTFMPSKFSAGL---INK-----E  136 (313)
T ss_pred             HHHHHhhhhhHHhhchHhh-----------HH--HHHHHHHHHHhcCCceEEeccccccChHHHhhhh---hhh-----h
Confidence            9999999999999998632           33  366777787777766655322 3456543 1222   111     1


Q ss_pred             eeEeeCCccccccccccccCCC-CeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHH
Q 011654          150 YQILSNPEFLAEGTAIQDLFNP-DRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRIS  228 (480)
Q Consensus       150 ~~v~~~Pe~~~~G~a~~~~~~~-~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia  228 (480)
                      -.++.+|..  |-     .+-| ..+| -.  +-+++++.++.+.++..++. .++....    |...++-|   ..+.+
T Consensus       137 q~lvaHPvN--PP-----yfiPLvElV-Pa--PwTsp~tVdrt~~lM~sigq-~pV~l~r----ei~Gf~ln---riq~A  198 (313)
T KOG2305|consen  137 QCLVAHPVN--PP-----YFIPLVELV-PA--PWTSPDTVDRTRALMRSIGQ-EPVTLKR----EILGFALN---RIQYA  198 (313)
T ss_pred             heeEecCCC--CC-----cccchheec-cC--CCCChhHHHHHHHHHHHhCC-CCccccc----ccccceec---cccHH
Confidence            234555531  11     0100 1122 22  23368899999999999874 4454432    34444445   57799


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          229 SVNAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       229 ~~nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                      .+||..++....+++..++..+++.+
T Consensus       199 ilne~wrLvasGil~v~dvD~VmS~G  224 (313)
T KOG2305|consen  199 ILNETWRLVASGILNVNDVDAVMSAG  224 (313)
T ss_pred             HHHHHHHHHHccCcchhhHHHHHhcC
Confidence            99999999999999999999888754

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=98.96  E-value=1.3e-09  Score=94.04  Aligned_cols=92  Identities=28%  Similarity=0.251  Sum_probs=64.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVV-DISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|.+|..++..|.++  ||+|.++ .++++..+.+....                 +.. ...++.+.+.++|
T Consensus        11 l~I~iIGaGrVG~~La~aL~~a--g~~v~~v~srs~~sa~~a~~~~-----------------~~~-~~~~~~~~~~~aD   70 (127)
T PF10727_consen   11 LKIGIIGAGRVGTALARALARA--GHEVVGVYSRSPASAERAAAFI-----------------GAG-AILDLEEILRDAD   70 (127)
T ss_dssp             -EEEEECTSCCCCHHHHHHHHT--TSEEEEESSCHH-HHHHHHC-------------------TT------TTGGGCC-S
T ss_pred             cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeCCccccccccccc-----------------ccc-cccccccccccCC
Confidence            7999999999999999999998  9999875 67777777666421                 112 2235567789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhh--CCCCCEEEEecC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV--SNSNKIVVEKST  128 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~--l~~~~iVi~~ST  128 (480)
                      +|||+||..               .+.++.++|...  .+++++|+-+|.
T Consensus        71 lv~iavpDd---------------aI~~va~~La~~~~~~~g~iVvHtSG  105 (127)
T PF10727_consen   71 LVFIAVPDD---------------AIAEVAEQLAQYGAWRPGQIVVHTSG  105 (127)
T ss_dssp             EEEE-S-CC---------------HHHHHHHHHHCC--S-TT-EEEES-S
T ss_pred             EEEEEechH---------------HHHHHHHHHHHhccCCCCcEEEECCC
Confidence            999999842               478899999987  788999998874

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=98.93  E-value=8.6e-08  Score=95.88  Aligned_cols=151  Identities=9%  Similarity=0.046  Sum_probs=94.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||.++|..|...  |++|++++++.++.......                  .++.. .+.+++++.||+
T Consensus        18 ktIgIIG~GsmG~AlA~~L~~s--G~~Vvv~~r~~~~s~~~A~~------------------~G~~~-~s~~eaa~~ADV   76 (330)
T PRK05479         18 KKVAIIGYGSQGHAHALNLRDS--GVDVVVGLREGSKSWKKAEA------------------DGFEV-LTVAEAAKWADV   76 (330)
T ss_pred             CEEEEEeeHHHHHHHHHHHHHC--CCEEEEEECCchhhHHHHHH------------------CCCee-CCHHHHHhcCCE
Confidence            5899999999999999999988  99999988775443322211                  12333 377888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      |+++||..               ....++ +++.+.++++++|+..+.+......   ....+   +.++. ...|.  .
T Consensus        77 VvLaVPd~---------------~~~~V~~~~I~~~Lk~g~iL~~a~G~~i~~~~---~~p~~---~~~Vi-~vaPn--~  132 (330)
T PRK05479         77 IMILLPDE---------------VQAEVYEEEIEPNLKEGAALAFAHGFNIHFGQ---IVPPA---DVDVI-MVAPK--G  132 (330)
T ss_pred             EEEcCCHH---------------HHHHHHHHHHHhcCCCCCEEEECCCCChhhce---eccCC---CCcEE-EeCCC--C
Confidence            99999842               125666 7788999999988776654433211   11111   23332 33464  3


Q ss_pred             ccccccccC----CCCeEE-EEeCCCcchHHHHHHHHHHHhccCC
Q 011654          161 EGTAIQDLF----NPDRVL-IGGRETPEGQKAIQALKDVYAHWVP  200 (480)
Q Consensus       161 ~G~a~~~~~----~~~~vv-iG~~~~~~~~~~~~~~~~l~~~~~~  200 (480)
                      ||..+...+    ..+.++ +..+   .+.+..+.+..++..++.
T Consensus       133 Pg~~vr~~~~~G~Gv~~l~av~~d---~t~~a~~~a~~l~~aiG~  174 (330)
T PRK05479        133 PGHLVRREYEEGGGVPCLIAVHQD---ASGNAKDLALAYAKGIGG  174 (330)
T ss_pred             CchhhhhhhhcCCCceEEEEecCC---CCHHHHHHHHHHHHHcCC
Confidence            333222211    122333 2221   246788899999999863

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=98.92  E-value=2.9e-08  Score=91.83  Aligned_cols=164  Identities=20%  Similarity=0.191  Sum_probs=98.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI-SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      ||+|+|+|.|.+|.++|.+|++.  ||+|+.-.+ .+++.+...+...                ..++. .+.+++++.+
T Consensus         1 m~~~~i~GtGniG~alA~~~a~a--g~eV~igs~r~~~~~~a~a~~l~----------------~~i~~-~~~~dA~~~a   61 (211)
T COG2085           1 MMIIAIIGTGNIGSALALRLAKA--GHEVIIGSSRGPKALAAAAAALG----------------PLITG-GSNEDAAALA   61 (211)
T ss_pred             CcEEEEeccChHHHHHHHHHHhC--CCeEEEecCCChhHHHHHHHhhc----------------ccccc-CChHHHHhcC
Confidence            89999999999999999999998  999998854 4555555544211                12332 3456778999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCcc---------------ch-HHHHHHHHHh
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPV---------------KT-AEAIEKILTH  143 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~---------------gt-~~~l~~~l~~  143 (480)
                      |+||++||-+               ++..+++++...+. +++||+ .|+|.               ++ ++.+++.+..
T Consensus        62 DVVvLAVP~~---------------a~~~v~~~l~~~~~-~KIvID-~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~  124 (211)
T COG2085          62 DVVVLAVPFE---------------AIPDVLAELRDALG-GKIVID-ATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPG  124 (211)
T ss_pred             CEEEEeccHH---------------HHHhHHHHHHHHhC-CeEEEe-cCCCccccCCccccccCCCCCcHHHHHHHHCCC
Confidence            9999999853               35677788877766 787776 56651               11 2233443333


Q ss_pred             cCCCCceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCCh
Q 011654          144 NSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNL  209 (480)
Q Consensus       144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~  209 (480)
                      ...-.-|.-+. ...+..+.. .. ... -+.+.|+    |.++.+.+.+|-+.++ ...+-.++.
T Consensus       125 akVVkAFn~i~-a~~l~~~~~-~~-~~~-~v~vagD----D~~Ak~~v~~L~~~iG-~~~ld~G~L  181 (211)
T COG2085         125 AKVVKAFNTIP-AAVLADLAK-PG-GRR-DVLVAGD----DAEAKAVVAELAEDIG-FRPLDAGPL  181 (211)
T ss_pred             cchhhhhcccC-HHHhccCCC-cC-Cce-eEEEecC----cHHHHHHHHHHHHhcC-cceeecccc
Confidence            21001121111 111211111 11 122 2445566    5889999999999884 344555543

>COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only]

Probab=98.86  E-value=4.4e-07  Score=85.31  Aligned_cols=247  Identities=15%  Similarity=0.089  Sum_probs=150.5

Q ss_pred             CcEEEEEcCChh--------------------HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh
Q 011654            1 MVKICCIGAGYV--------------------GGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ   60 (480)
Q Consensus         1 imkI~VIGlG~~--------------------G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~   60 (480)
                      +|||+|.|+|+-                    |..||..||.+  ||+|++.|.|.+..+.              +....
T Consensus         1 ~mkv~vygagnq~ly~~~l~~pek~ggE~PyGGa~mAiefAeA--GHDVVLaePn~d~~dd--------------~~w~~   64 (340)
T COG4007           1 MMKVAVYGAGNQRLYLEQLNLPEKYGGEPPYGGARMAIEFAEA--GHDVVLAEPNRDIMDD--------------EHWKR   64 (340)
T ss_pred             CceEEEEcCCccchhHHhcCChhhhCCCCCCCchHHHHHHHHc--CCcEEeecCCccccCH--------------HHHHH
Confidence            699999999964                    88999999998  9999999987543211              11111


Q ss_pred             hcCCCEEEecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH-HHHHH
Q 011654           61 CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA-EAIEK  139 (480)
Q Consensus        61 ~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~-~~l~~  139 (480)
                      +...+.+.++|-.++++++++.++-+  |+..            .-..++++|.++++.|.+|.+..|++|-.. ..|..
T Consensus        65 vedAGV~vv~dD~eaa~~~Ei~VLFT--PFGk------------~T~~Iarei~~hvpEgAVicnTCT~sp~vLy~~LE~  130 (340)
T COG4007          65 VEDAGVEVVSDDAEAAEHGEIHVLFT--PFGK------------ATFGIAREILEHVPEGAVICNTCTVSPVVLYYSLEG  130 (340)
T ss_pred             HHhcCcEEecCchhhhhcceEEEEec--ccch------------hhHHHHHHHHhhCcCCcEecccccCchhHHHHHhhh
Confidence            22346788888788899999999995  4432            235788999999999999988888876543 34555


Q ss_pred             HHHhcCCCCceeEe-eCCccccccccccccCCCCeEEEEeCCC----cchHHHHHHHHHHHhccCCCCeEEeCChhHHHH
Q 011654          140 ILTHNSREIKYQIL-SNPEFLAEGTAIQDLFNPDRVLIGGRET----PEGQKAIQALKDVYAHWVPEDRIITTNLWSAEL  214 (480)
Q Consensus       140 ~l~~~~~g~~~~v~-~~Pe~~~~G~a~~~~~~~~~vviG~~~~----~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~  214 (480)
                      .|+-..  .|+.+. ++|. ..||...++.     +++|+..+    -.+++..+++.++.++.++  .+++.++.....
T Consensus       131 ~Lr~kR--~dVGvssmHPA-gvPGtp~h~~-----yviagr~t~g~elATeEQi~r~velaes~Gk--~~yv~padv~s~  200 (340)
T COG4007         131 ELRTKR--EDVGVSSMHPA-GVPGTPQHGH-----YVIAGRSTEGKELATEEQIERCVELAESTGK--EVYVLPADVVSA  200 (340)
T ss_pred             hhcCch--hhcCccccCCC-CCCCCCCCce-----EEEeccCCCceeeccHHHHHHHHHHHHhcCC--ceEecCHHHHHH
Confidence            554321  234443 3553 4477654443     45665433    2257788999999999863  555555433333


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHhc--CCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCc
Q 011654          215 SKLAANAFLAQRISSVNAMSALCEA-TGADVTQVSHAIG--KDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLT  290 (480)
Q Consensus       215 ~Kl~~N~~~~~~ia~~nE~~~l~~~-~Gid~~~v~~~~~--~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~  290 (480)
                      +.=+.-...+..++.+-+......+ .|+..+.+-+-+-  ... +  ..+--..|++|-.=.-|+.+|+..++...+.
T Consensus       201 VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMIekQilmtLqT-m--AsLvetsGi~g~~~~~n~elL~rSa~nM~l~  276 (340)
T COG4007         201 VADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMIEKQILMTLQT-M--ASLVETSGIDGMLKALNPELLLRSARNMHLL  276 (340)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHH-H--HHHHHhcchhHHHHhcCHHHHHHHhhhcccc
Confidence            3333334445556666666666553 4555433322111  010 0  1111122345444445777888777765443

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=98.86  E-value=7.4e-08  Score=94.21  Aligned_cols=189  Identities=16%  Similarity=0.237  Sum_probs=125.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-----eEEEEeCCH-------HHHHHHHCC-CCCCCCCChHHHHHhhcCCCEEE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-----EVAVVDISV-------SRIAAWNGD-QLPIYEPGLEDVVTQCRGRNLFF   68 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-----~V~~~D~~~-------~~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~~   68 (480)
                      .||+|||.|+||+++|+.+..+..++     +|..|-..+       ...+-+|+. ++.-|.|+.+      .+.++.+
T Consensus        22 ~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~------lP~NvvA   95 (372)
T KOG2711|consen   22 LKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIK------LPENVVA   95 (372)
T ss_pred             eEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCcc------CCCCeEe
Confidence            48999999999999999998753233     466655432       223334443 3555666643      3567899


Q ss_pred             ecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-Cc---cc-hHHHHHHHHHh
Q 011654           69 STDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VP---VK-TAEAIEKILTH  143 (480)
Q Consensus        69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~---~g-t~~~l~~~l~~  143 (480)
                      ++|+.+++.+||+++..||..               ++..++++|..+++++...|..+. +.   +| ..+.+.+++.+
T Consensus        96 v~dl~ea~~dADilvf~vPhQ---------------f~~~ic~~l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~  160 (372)
T KOG2711|consen   96 VPDLVEAAKDADILVFVVPHQ---------------FIPRICEQLKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHR  160 (372)
T ss_pred             cchHHHHhccCCEEEEeCChh---------------hHHHHHHHHhcccCCCCeEEEeecceeccCCCCceeehHHHHHH
Confidence            999999999999999999853               357789999999999888776553 22   33 24556777766


Q ss_pred             cCCCCceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeE-EeCChhHHHHhhhHHhH
Q 011654          144 NSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRI-ITTNLWSAELSKLAANA  221 (480)
Q Consensus       144 ~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v-~~~~~~~ae~~Kl~~N~  221 (480)
                      .. |....++.+|..+.+-..  +.+.-  -.||+.+.   .+.-..+++||++-.  .++ ...|..+.|++.-+.|.
T Consensus       161 ~l-gI~~~vL~GaNiA~EVa~--~~f~e--~tIg~~~~---~~~~~~l~~lf~~p~--FrV~~~~D~~~VEi~GaLKNV  229 (372)
T KOG2711|consen  161 AL-GIPCSVLMGANIASEVAN--EKFCE--TTIGYKDK---KEAGILLKKLFRTPY--FRVVVVEDADGVEICGALKNV  229 (372)
T ss_pred             Hh-CCCceeecCCchHHHHHh--ccccc--eeEeccch---hhcchHHHHHhCCCc--eEEEEeccchHhHHhhhHHhH
Confidence            54 345668888877665432  22222  23577632   233335888888742  333 44688888888877775

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=98.81  E-value=1.1e-07  Score=96.06  Aligned_cols=105  Identities=14%  Similarity=0.208  Sum_probs=77.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |+|+|||+|.||.++|..|...  |++|++||++++....                       ..+.++++++++++||+
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~--G~~V~~~d~~~~~~~~-----------------------~~~~~~~l~ell~~aDi  201 (330)
T PRK12480        147 MTVAIIGTGRIGAATAKIYAGF--GATITAYDAYPNKDLD-----------------------FLTYKDSVKEAIKDADI  201 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCChhHhhh-----------------------hhhccCCHHHHHhcCCE
Confidence            6899999999999999999987  9999999998754211                       11234678888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|...           +...+  ..+.+.+.++++.++|+.|--..=..+.|.+.|++.
T Consensus       202 Vil~lP~t~-----------~t~~l--i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g  251 (330)
T PRK12480        202 ISLHVPANK-----------ESYHL--FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDG  251 (330)
T ss_pred             EEEeCCCcH-----------HHHHH--HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcC
Confidence            999998642           22222  235677889999999987654333445566667653

>PRK06223 malate dehydrogenase; Reviewed

Probab=98.77  E-value=4.8e-08  Score=97.87  Aligned_cols=119  Identities=25%  Similarity=0.319  Sum_probs=79.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      ||||+|||+|.||..+|..++..  |+ +|+++|+++++.+.....   +.+..    .......+++.++|++ ++++|
T Consensus         2 ~~KI~VIGaG~vG~~ia~~la~~--~~~ev~L~D~~~~~~~~~~~d---l~~~~----~~~~~~~~i~~~~d~~-~~~~a   71 (307)
T PRK06223          2 RKKISIIGAGNVGATLAHLLALK--ELGDVVLFDIVEGVPQGKALD---IAEAA----PVEGFDTKITGTNDYE-DIAGS   71 (307)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEEECCCchhHHHHHH---HHhhh----hhcCCCcEEEeCCCHH-HHCCC
Confidence            79999999999999999999987  54 999999998865433211   00000    0001124567778885 48999


Q ss_pred             cEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           80 DIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      |+||+++..|.....   ++    .-+...++++++.+.++.+++.+|+.  |.|....
T Consensus        72 DiVii~~~~p~~~~~---~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~--tNP~d~~  125 (307)
T PRK06223         72 DVVVITAGVPRKPGM---SRDDLLGINAKIMKDVAEGIKKYAPDAIVIVV--TNPVDAM  125 (307)
T ss_pred             CEEEECCCCCCCcCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHHH
Confidence            999999988764311   00    13456678888888888865544443  5555543

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=98.71  E-value=5.2e-08  Score=97.58  Aligned_cols=120  Identities=28%  Similarity=0.426  Sum_probs=83.5

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      |||+|||+ |++|..+|..|+..  |+  +|+++|+++ +.+.++....++.+    .+.......++++++++++ +++
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~~~--g~~~~v~lvd~~~-~~~~l~~~~~dl~d----~~~~~~~~~~i~~~~d~~~-l~~   72 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLAKE--DVVKEINLISRPK-SLEKLKGLRLDIYD----ALAAAGIDAEIKISSDLSD-VAG   72 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEECcc-cccccccccchhhh----chhccCCCcEEEECCCHHH-hCC
Confidence            89999998 99999999999987  55  599999954 34444444333321    1111000124666677665 999


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      ||+||+|+.+|...+.    .+.|+     +.++++.+.|.++.+.+.+|+..++++..|
T Consensus        73 aDiViitag~p~~~~~----~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t  128 (309)
T cd05294          73 SDIVIITAGVPRKEGM----SRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMT  128 (309)
T ss_pred             CCEEEEecCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHH
Confidence            9999999998865421    12455     778888899999887667777766777665

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>PRK07574 formate dehydrogenase; Provisional

Probab=98.69  E-value=2.7e-07  Score=94.59  Aligned_cols=109  Identities=11%  Similarity=0.131  Sum_probs=80.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..|...  |.+|++||++....+....                   .+++...+++++++.||+
T Consensus       193 ktVGIvG~G~IG~~vA~~l~~f--G~~V~~~dr~~~~~~~~~~-------------------~g~~~~~~l~ell~~aDv  251 (385)
T PRK07574        193 MTVGIVGAGRIGLAVLRRLKPF--DVKLHYTDRHRLPEEVEQE-------------------LGLTYHVSFDSLVSVCDV  251 (385)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCchhhHhh-------------------cCceecCCHHHHhhcCCE
Confidence            6899999999999999999887  9999999987532221111                   123444678898999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|..           +++..+.  -++....++++.++|+.+....-..+.|.+.|++.
T Consensus       252 V~l~lPlt-----------~~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG  301 (385)
T PRK07574        252 VTIHCPLH-----------PETEHLF--DADVLSRMKRGSYLVNTARGKIVDRDAVVRALESG  301 (385)
T ss_pred             EEEcCCCC-----------HHHHHHh--CHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHhC
Confidence            99999853           2223332  14567778999999998877666667787777764

>PLN03139 formate dehydrogenase; Provisional

Probab=98.66  E-value=3.3e-07  Score=93.88  Aligned_cols=109  Identities=10%  Similarity=0.110  Sum_probs=79.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..|..-  |.+|++||++....+....                   .++....+++++++.||+
T Consensus       200 ktVGIVG~G~IG~~vA~~L~af--G~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~sDv  258 (386)
T PLN03139        200 KTVGTVGAGRIGRLLLQRLKPF--NCNLLYHDRLKMDPELEKE-------------------TGAKFEEDLDAMLPKCDV  258 (386)
T ss_pred             CEEEEEeecHHHHHHHHHHHHC--CCEEEEECCCCcchhhHhh-------------------cCceecCCHHHHHhhCCE
Confidence            5899999999999999999876  9999999987432221111                   123445688998999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|...           ++..+.  -+++...++++.++|+.+....-..+.|.+.|++.
T Consensus       259 V~l~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG  308 (386)
T PLN03139        259 VVINTPLTE-----------KTRGMF--NKERIAKMKKGVLIVNNARGAIMDTQAVADACSSG  308 (386)
T ss_pred             EEEeCCCCH-----------HHHHHh--CHHHHhhCCCCeEEEECCCCchhhHHHHHHHHHcC
Confidence            999998532           223332  24577788999999998876655566677777764

>PRK08605 D-lactate dehydrogenase; Validated

Probab=98.66  E-value=1.3e-07  Score=95.63  Aligned_cols=107  Identities=18%  Similarity=0.190  Sum_probs=78.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |+|+|||+|.||..+|..|++.+ |.+|++||+++...  ...                    .+..++++++++++||+
T Consensus       147 ~~VgIIG~G~IG~~vA~~L~~~~-g~~V~~~d~~~~~~--~~~--------------------~~~~~~~l~ell~~aDv  203 (332)
T PRK08605        147 LKVAVIGTGRIGLAVAKIFAKGY-GSDVVAYDPFPNAK--AAT--------------------YVDYKDTIEEAVEGADI  203 (332)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC-CCEEEEECCCccHh--HHh--------------------hccccCCHHHHHHhCCE
Confidence            68999999999999999995432 88999999876432  111                    12345678888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|.....           ..+..  ..+.+.++++.++|+.|+...-.++.+...|++.
T Consensus       204 Ivl~lP~t~~t-----------~~li~--~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g  253 (332)
T PRK08605        204 VTLHMPATKYN-----------HYLFN--ADLFKHFKKGAVFVNCARGSLVDTKALLDALDNG  253 (332)
T ss_pred             EEEeCCCCcch-----------hhhcC--HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence            99999864321           22211  3456778999999999988777777777777653

>PRK13243 glyoxylate reductase; Reviewed

Probab=98.65  E-value=3.3e-07  Score=92.77  Aligned_cols=107  Identities=16%  Similarity=0.118  Sum_probs=78.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..|...  |++|++||+++..... ..                   .+... .++++++++||+
T Consensus       151 ktvgIiG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~-~~-------------------~~~~~-~~l~ell~~aDi  207 (333)
T PRK13243        151 KTIGIIGFGRIGQAVARRAKGF--GMRILYYSRTRKPEAE-KE-------------------LGAEY-RPLEELLRESDF  207 (333)
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCChhhH-HH-------------------cCCEe-cCHHHHHhhCCE
Confidence            4899999999999999999887  8999999997543211 11                   01222 468888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|...           ++..+.  -++....++++.++|+.|+...-..+.|.+.|++.
T Consensus       208 V~l~lP~t~-----------~T~~~i--~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g  257 (333)
T PRK13243        208 VSLHVPLTK-----------ETYHMI--NEERLKLMKPTAILVNTARGKVVDTKALVKALKEG  257 (333)
T ss_pred             EEEeCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcC
Confidence            999998532           122221  23566778999999999987777777788877764

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.61  E-value=4e-06  Score=83.95  Aligned_cols=152  Identities=12%  Similarity=0.105  Sum_probs=89.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI-SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +||+|||+|.||.++|..|.+.  |++|+++++ +++..+.+.+.                   ++..+ +..+++++||
T Consensus         4 kkIgiIG~G~mG~AiA~~L~~s--G~~Viv~~~~~~~~~~~a~~~-------------------Gv~~~-s~~ea~~~AD   61 (314)
T TIGR00465         4 KTVAIIGYGSQGHAQALNLRDS--GLNVIVGLRKGGASWKKATED-------------------GFKVG-TVEEAIPQAD   61 (314)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHC--CCeEEEEECcChhhHHHHHHC-------------------CCEEC-CHHHHHhcCC
Confidence            6899999999999999999998  888876554 44444444321                   23433 4777789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      +|++|||..              .....+.+++.+.++++.+|.+...+...   .+...+.+   +.++ +--.|.-  
T Consensus        62 iVvLaVpp~--------------~~~~~v~~ei~~~l~~g~iVs~aaG~~i~---~~~~~~~~---~~~V-vrvmPn~--  118 (314)
T TIGR00465        62 LIMNLLPDE--------------VQHEVYEAEIQPLLKEGKTLGFSHGFNIH---FVQIVPPK---DVDV-VMVAPKG--  118 (314)
T ss_pred             EEEEeCCcH--------------hHHHHHHHHHHhhCCCCcEEEEeCCccHh---hccccCCC---CCcE-EEECCCC--
Confidence            999999832              11344566788888888876654444322   22222221   1222 2234532  


Q ss_pred             ccccc-cc---cCCCCeEEEEeCCCcchHHHHHHHHHHHhccCC
Q 011654          161 EGTAI-QD---LFNPDRVLIGGRETPEGQKAIQALKDVYAHWVP  200 (480)
Q Consensus       161 ~G~a~-~~---~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~  200 (480)
                      |+..+ ..   -...+.++.-..  ..+.+..+.+..++..++.
T Consensus       119 p~~~vr~~~~~G~G~~~l~a~~~--~~~~~~~~~~~~~~~~iG~  160 (314)
T TIGR00465       119 PGTLVREEYKEGFGVPTLIAVEQ--DPTGEAMAIALAYAKAIGG  160 (314)
T ss_pred             CcHHHHHHhhcCCCeeEEEEecC--CCCHHHHHHHHHHHHHcCC
Confidence            22211 00   011122321122  1246778899999999863

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=98.57  E-value=9.5e-07  Score=88.51  Aligned_cols=111  Identities=22%  Similarity=0.399  Sum_probs=74.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHH----HHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK--IEVAVVDISVSRIAA----WNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~----l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a   75 (480)
                      |||+|||+|++|.++|..|+.+  |  .+|.++|+++++.+.    +... .++.++            ....+++++ +
T Consensus         1 mkI~IIGaG~VG~~~a~~l~~~--g~~~ev~l~D~~~~~~~g~a~dl~~~-~~~~~~------------~~i~~~d~~-~   64 (308)
T cd05292           1 MKVAIVGAGFVGSTTAYALLLR--GLASEIVLVDINKAKAEGEAMDLAHG-TPFVKP------------VRIYAGDYA-D   64 (308)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCCCEEEEEECCchhhhhHHHHHHcc-ccccCC------------eEEeeCCHH-H
Confidence            7999999999999999999998  6  689999999877654    3332 122111            122356765 4


Q ss_pred             hccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           76 VAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      +++||+||+|++.|.....   ++    ..+.+.+++..+.+.++.+.+.+++.  |.|...
T Consensus        65 l~~aDiViita~~~~~~~~---~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~--tNP~d~  121 (308)
T cd05292          65 CKGADVVVITAGANQKPGE---TRLDLLKRNVAIFKEIIPQILKYAPDAILLVV--TNPVDV  121 (308)
T ss_pred             hCCCCEEEEccCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence            8999999999998765410   10    11344566777777777765554443  445443

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=98.57  E-value=3e-07  Score=90.87  Aligned_cols=90  Identities=11%  Similarity=0.096  Sum_probs=67.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||.++|.+|...  |++|+++++.....+....                   .++.. .+++++++.||+
T Consensus        17 KtVGIIG~GsIG~amA~nL~d~--G~~ViV~~r~~~s~~~A~~-------------------~G~~v-~sl~Eaak~ADV   74 (335)
T PRK13403         17 KTVAVIGYGSQGHAQAQNLRDS--GVEVVVGVRPGKSFEVAKA-------------------DGFEV-MSVSEAVRTAQV   74 (335)
T ss_pred             CEEEEEeEcHHHHHHHHHHHHC--cCEEEEEECcchhhHHHHH-------------------cCCEE-CCHHHHHhcCCE
Confidence            4799999999999999999988  9999999875433322221                   12333 378899999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecC
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKST  128 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~ST  128 (480)
                      |++++|++.+               ..++ +.+.+.++++++++..-.
T Consensus        75 V~llLPd~~t---------------~~V~~~eil~~MK~GaiL~f~hg  107 (335)
T PRK13403         75 VQMLLPDEQQ---------------AHVYKAEVEENLREGQMLLFSHG  107 (335)
T ss_pred             EEEeCCChHH---------------HHHHHHHHHhcCCCCCEEEECCC
Confidence            9999996421               2333 568889999998876543

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.57  E-value=1.8e-07  Score=83.71  Aligned_cols=111  Identities=17%  Similarity=0.163  Sum_probs=75.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||.+++..|++.+ +++|+++|+++++.+.+.+....              ........+..+.++++|+
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~g-~~~v~v~~r~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~Dv   84 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELG-AAKIVIVNRTLEKAKALAERFGE--------------LGIAIAYLDLEELLAEADL   84 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCC-CCEEEEEcCCHHHHHHHHHHHhh--------------cccceeecchhhccccCCE
Confidence            58999999999999999999872 37899999999988776532000              0000123455666789999


Q ss_pred             EEEeccCCCC-cCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTK-TQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~-~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      ||+|+|.+.. .+        +.. +.      ...++++.+|++.|++++.+  .+.+.+++.
T Consensus        85 vi~~~~~~~~~~~--------~~~-~~------~~~~~~~~~v~D~~~~~~~~--~l~~~~~~~  131 (155)
T cd01065          85 IINTTPVGMKPGD--------ELP-LP------PSLLKPGGVVYDVVYNPLET--PLLKEARAL  131 (155)
T ss_pred             EEeCcCCCCCCCC--------CCC-CC------HHHcCCCCEEEEcCcCCCCC--HHHHHHHHC
Confidence            9999987653 10        000 00      11257899999999987665  555555554

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK06436 glycerate dehydrogenase; Provisional

Probab=98.55  E-value=5.6e-07  Score=89.63  Aligned_cols=104  Identities=10%  Similarity=0.107  Sum_probs=76.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |++|++||++...     .+        .           .....++++++++||+
T Consensus       123 ktvgIiG~G~IG~~vA~~l~af--G~~V~~~~r~~~~-----~~--------~-----------~~~~~~l~ell~~aDi  176 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAF--GMNIYAYTRSYVN-----DG--------I-----------SSIYMEPEDIMKKSDF  176 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcc-----cC--------c-----------ccccCCHHHHHhhCCE
Confidence            5799999999999999987765  9999999986321     11        0           0113478888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|....           +..+.  -++....++++.++|+.|+.++-..+.|.+.|++.
T Consensus       177 v~~~lp~t~~-----------T~~li--~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g  226 (303)
T PRK06436        177 VLISLPLTDE-----------TRGMI--NSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNH  226 (303)
T ss_pred             EEECCCCCch-----------hhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence            9999985321           12121  24456668999999999988777778888888764

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=98.55  E-value=1e-06  Score=77.92  Aligned_cols=119  Identities=23%  Similarity=0.306  Sum_probs=75.9

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+ |.+|..+|..|..+..+.++.++|+++++.+.....        ++..... .....+...+..+++++||
T Consensus         1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~D--------l~~~~~~-~~~~~~i~~~~~~~~~~aD   71 (141)
T PF00056_consen    1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALD--------LSHASAP-LPSPVRITSGDYEALKDAD   71 (141)
T ss_dssp             SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH--------HHHHHHG-STEEEEEEESSGGGGTTES
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehh--------hhhhhhh-ccccccccccccccccccc
Confidence            89999999 999999999999875567899999998876654421        1111111 1112333334445699999


Q ss_pred             EEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      +|+++...|..+.   .++    ..+...+++..+.+.++.+.+.+++.  |.|....
T Consensus        72 ivvitag~~~~~g---~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivv--tNPvd~~  124 (141)
T PF00056_consen   72 IVVITAGVPRKPG---MSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVV--TNPVDVM  124 (141)
T ss_dssp             EEEETTSTSSSTT---SSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE---SSSHHHH
T ss_pred             EEEEecccccccc---ccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEe--CCcHHHH
Confidence            9999998775431   111    12334456666777777754444443  5666543

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=98.55  E-value=6.3e-07  Score=87.86  Aligned_cols=108  Identities=18%  Similarity=0.145  Sum_probs=71.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIE-VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      ||||+|||+|.||..++..+.+..++++ +.++|+++++.+.+.+..                  +....+++++.+.++
T Consensus         1 mmrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~------------------~~~~~~~~~ell~~~   62 (265)
T PRK13304          1 MLKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKT------------------GAKACLSIDELVEDV   62 (265)
T ss_pred             CCEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhc------------------CCeeECCHHHHhcCC
Confidence            7999999999999999999987511455 557999999888766421                  134567888877899


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC---CccchHHHHHHHHHhc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST---VPVKTAEAIEKILTHN  144 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST---v~~gt~~~l~~~l~~~  144 (480)
                      |+|++|+|..               ...+....+.   +.|.-+++.|+   ..+...+++.+..++.
T Consensus        63 DvVvi~a~~~---------------~~~~~~~~al---~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~  112 (265)
T PRK13304         63 DLVVECASVN---------------AVEEVVPKSL---ENGKDVIIMSVGALADKELFLKLYKLAKEN  112 (265)
T ss_pred             CEEEEcCChH---------------HHHHHHHHHH---HcCCCEEEEchHHhcCHHHHHHHHHHHHHc
Confidence            9999997632               1233333333   33444555555   2344445565555554

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=98.48  E-value=8.2e-07  Score=88.71  Aligned_cols=117  Identities=21%  Similarity=0.273  Sum_probs=76.0

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCcE
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |+|||+|+||..+|..|+.+  |. +|+++|+++++.+...-        ++.+.... ....+++.++|+++ +++||+
T Consensus         1 I~IIGaG~vG~~ia~~la~~--~l~eV~L~Di~e~~~~g~~~--------dl~~~~~~~~~~~~I~~t~d~~~-l~dADi   69 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALK--ELGDVVLLDIVEGLPQGKAL--------DISQAAPILGSDTKVTGTNDYED-IAGSDV   69 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhC--CCcEEEEEeCCCcHHHHHHH--------HHHHhhhhcCCCeEEEEcCCHHH-hCCCCE
Confidence            68999999999999999987  55 99999999875432221        11111111 01245677778664 899999


Q ss_pred             EEEeccCCCCcCCCC-CCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLG-AGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~-~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      ||+|+.+|...+... +...-++..++++++.+.++.+++.+|+.  |.|...
T Consensus        70 VIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~--sNP~di  120 (300)
T cd01339          70 VVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVV--TNPLDV  120 (300)
T ss_pred             EEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCcHHH
Confidence            999998876542100 00012566677888888888866554543  345443

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.48  E-value=1e-06  Score=86.52  Aligned_cols=109  Identities=15%  Similarity=0.162  Sum_probs=72.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +||+|||+|.||..++..|.+..+++++. ++|+++++.+.+.+..                 +.....+++++.+.++|
T Consensus         7 irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~-----------------g~~~~~~~~eell~~~D   69 (271)
T PRK13302          7 LRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGL-----------------RRPPPVVPLDQLATHAD   69 (271)
T ss_pred             eEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhc-----------------CCCcccCCHHHHhcCCC
Confidence            68999999999999999998632478876 7899999877665421                 11234567888788999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~  145 (480)
                      +|++|+|+..+               .+.....   ++.|+.|+..|+......+++.+..++.+
T Consensus        70 ~Vvi~tp~~~h---------------~e~~~~a---L~aGk~Vi~~s~gal~~~~~L~~~A~~~g  116 (271)
T PRK13302         70 IVVEAAPASVL---------------RAIVEPV---LAAGKKAIVLSVGALLRNEDLIDLARQNG  116 (271)
T ss_pred             EEEECCCcHHH---------------HHHHHHH---HHcCCcEEEecchhHHhHHHHHHHHHHcC
Confidence            99999886421               2333333   34566555555433334456666666543

>PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D

Probab=98.46  E-value=1.1e-06  Score=75.67  Aligned_cols=89  Identities=21%  Similarity=0.257  Sum_probs=70.7

Q ss_pred             hHHHHhhhHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCC-------Cc-cc--cCCCCCcccchhhhHHH
Q 011654          210 WSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIG-------PR-FL--NSSVGFGGSCFQKDILN  279 (480)
Q Consensus       210 ~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~-------~~-~~--~pg~g~gg~cl~kD~~~  279 (480)
                      +++..+|+++|.+.+.++..+.|...++++.|+|+++++++++..+.-+       ++ ++  .+.++|....+.||+.+
T Consensus         1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~~~~~~~~~~~~f~l~~~~KDl~l   80 (122)
T PF14833_consen    1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAPRMILNGDFDPGFSLDLARKDLRL   80 (122)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHHHHHHTTTTCSSSBHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhhhhhhcccCCccchhHhhccHHHH
Confidence            4688999999999999999999999999999999999999998765211       11 11  35577899999999999


Q ss_pred             HHHHHHHcCCchhhhHHHHHH
Q 011654          280 LVYICECNGLTEVANYWKQVI  300 (480)
Q Consensus       280 l~~~a~~~g~~~~~~~~~~~~  300 (480)
                      ..+.+++.|++  .++.+.+.
T Consensus        81 ~~~~a~~~g~~--~p~~~~~~   99 (122)
T PF14833_consen   81 ALDLAKEAGVP--LPLGSAAR   99 (122)
T ss_dssp             HHHHHHHTT-----HHHHHHH
T ss_pred             HHHHHHHcCCC--CHHHHHHH
Confidence            99999999998  66665543

...

>PRK06444 prephenate dehydrogenase; Provisional

Probab=98.44  E-value=6.9e-05  Score=69.87  Aligned_cols=190  Identities=15%  Similarity=0.140  Sum_probs=110.0

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||. |.||..++..|.+.  |+.|+                                             +++||
T Consensus         1 ~~~~iiG~~G~mG~~~~~~~~~~--g~~v~---------------------------------------------~~~~D   33 (197)
T PRK06444          1 MMEIIIGKNGRLGRVLCSILDDN--GLGVY---------------------------------------------IKKAD   33 (197)
T ss_pred             CEEEEEecCCcHHHHHHHHHHhC--CCEEE---------------------------------------------ECCCC
Confidence            79999998 99999999999988  88875                                             13689


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      +||+|+|..               .+.+.++++.      .+|++.+++...    +.+   ..   .+ ++..+|-+. 
T Consensus        34 lVilavPv~---------------~~~~~i~~~~------~~v~Dv~SvK~~----i~~---~~---~~-~vg~HPMfG-   80 (197)
T PRK06444         34 HAFLSVPID---------------AALNYIESYD------NNFVEISSVKWP----FKK---YS---GK-IVSIHPLFG-   80 (197)
T ss_pred             EEEEeCCHH---------------HHHHHHHHhC------CeEEeccccCHH----HHH---hc---CC-EEecCCCCC-
Confidence            999998842               2344444442      356665544321    221   11   12 477888764 


Q ss_pred             ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhH-HHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 011654          161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWS-AELSKLAANAFLAQRISSVNAMSALCEA  239 (480)
Q Consensus       161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-ae~~Kl~~N~~~~~~ia~~nE~~~l~~~  239 (480)
                      |.++..+++.  .+++-.  +..+++..+.++++++  +  ..+..++++. -+++-++            .-+..+...
T Consensus        81 p~~a~~~lf~--~~iv~~--~~~~~~~~~~~~~l~~--G--~~~~~~t~eeHD~~~A~i------------shLpH~ia~  140 (197)
T PRK06444         81 PMSYNDGVHR--TVIFIN--DISRDNYLNEINEMFR--G--YHFVEMTADEHDLLMSEI------------MVKPYIISM  140 (197)
T ss_pred             CCcCcccccc--eEEEEC--CCCCHHHHHHHHHHHc--C--CEEEEeCHHHHHHHHHHH------------HHHHHHHHH
Confidence            5555555552  333322  2336777888999988  2  4677777764 2333332            222221110


Q ss_pred             hCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHc-CCchhhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 011654          240 TGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECN-GLTEVANYWKQVIKVNDYQKNRFVNRIVSSM  318 (480)
Q Consensus       240 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~-g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l  318 (480)
                      .-.+.       .      ..+  .++||      +   .+.++|+.. +-+  +.+|......|.+-  ..++++++.+
T Consensus       141 al~~~-------~------~~~--~t~~f------r---~l~ria~~~~~~~--p~lw~dI~~~N~~a--~~~~~~~~~~  192 (197)
T PRK06444        141 ILKDI-------K------SDI--KTGSF------D---KLLEVSEIKEKEN--WEVFNDTIIYNPYT--NVINDLIERL  192 (197)
T ss_pred             HHccC-------C------CCC--CCccH------H---HHHHHHHHhccCC--HHHHHHHHHHCchH--HHHHHHHHHH
Confidence            00010       0      012  12222      3   445566543 334  68999999999886  6667777766


Q ss_pred             c
Q 011654          319 F  319 (480)
Q Consensus       319 ~  319 (480)
                      +
T Consensus       193 ~  193 (197)
T PRK06444        193 N  193 (197)
T ss_pred             h
Confidence            4

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=98.43  E-value=7.9e-07  Score=79.29  Aligned_cols=114  Identities=23%  Similarity=0.273  Sum_probs=75.6

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEEE
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVF   83 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvVi   83 (480)
                      |+|+|+|.||+.+|..|++.  |++|+++++.+ +.+.+++....+....-++.+     .......+..+....+|+||
T Consensus         1 I~I~G~GaiG~~~a~~L~~~--g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~D~vi   72 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQA--GHDVTLVSRSP-RLEAIKEQGLTITGPDGDETV-----QPPIVISAPSADAGPYDLVI   72 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHT--TCEEEEEESHH-HHHHHHHHCEEEEETTEEEEE-----EEEEEESSHGHHHSTESEEE
T ss_pred             CEEECcCHHHHHHHHHHHHC--CCceEEEEccc-cHHhhhheeEEEEecccceec-----ccccccCcchhccCCCcEEE
Confidence            78999999999999999997  99999999998 888887643333221100000     00112233323468999999


Q ss_pred             EeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHH
Q 011654           84 VSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKIL  141 (480)
Q Consensus        84 i~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l  141 (480)
                      +||++.            +   +.++++.+.+++.+++.|+. .....+..+.+.+.+
T Consensus        73 v~vKa~------------~---~~~~l~~l~~~~~~~t~iv~-~qNG~g~~~~l~~~~  114 (151)
T PF02558_consen   73 VAVKAY------------Q---LEQALQSLKPYLDPNTTIVS-LQNGMGNEEVLAEYF  114 (151)
T ss_dssp             E-SSGG------------G---HHHHHHHHCTGEETTEEEEE-ESSSSSHHHHHHCHS
T ss_pred             EEeccc------------c---hHHHHHHHhhccCCCcEEEE-EeCCCCcHHHHHHHc
Confidence            998853            2   36788889999988865543 344556656665554

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=98.42  E-value=2.8e-06  Score=72.52  Aligned_cols=71  Identities=25%  Similarity=0.433  Sum_probs=56.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~   78 (480)
                      |||+|||+|.+|......+.+..++.++. ++|+++++.+.+.+.                  -++...+|+++.++  +
T Consensus         1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~------------------~~~~~~~~~~~ll~~~~   62 (120)
T PF01408_consen    1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK------------------YGIPVYTDLEELLADED   62 (120)
T ss_dssp             EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH------------------TTSEEESSHHHHHHHTT
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH------------------hcccchhHHHHHHHhhc
Confidence            68999999999999998888764577765 689999988876532                  13447788888776  7


Q ss_pred             CcEEEEeccCCC
Q 011654           79 ADIVFVSVNTPT   90 (480)
Q Consensus        79 aDvVii~Vptp~   90 (480)
                      .|+|+||+|+..
T Consensus        63 ~D~V~I~tp~~~   74 (120)
T PF01408_consen   63 VDAVIIATPPSS   74 (120)
T ss_dssp             ESEEEEESSGGG
T ss_pred             CCEEEEecCCcc
Confidence            899999988643

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=98.40  E-value=3.8e-06  Score=84.38  Aligned_cols=132  Identities=16%  Similarity=0.157  Sum_probs=85.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI-SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|||||+|.+|..+|..+..-  |.+|++||+ .+...+...                     ......++++.++.||
T Consensus       143 kTvGIiG~G~IG~~va~~l~af--gm~v~~~d~~~~~~~~~~~---------------------~~~~~~~Ld~lL~~sD  199 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAF--GMKVIGYDPYSPRERAGVD---------------------GVVGVDSLDELLAEAD  199 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCeEEEECCCCchhhhccc---------------------cceecccHHHHHhhCC
Confidence            4799999999999999999887  999999999 333221111                     1233467889999999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCC---CCceeEeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR---EIKYQILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe  157 (480)
                      +|++.+|-..           ++..+..  .+....+++|.++|+.+=-+.=..+.|.+.|++...   +.|   ++-+|
T Consensus       200 iv~lh~PlT~-----------eT~g~i~--~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lD---Vf~~E  263 (324)
T COG0111         200 ILTLHLPLTP-----------ETRGLIN--AEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALD---VFEEE  263 (324)
T ss_pred             EEEEcCCCCc-----------chhcccC--HHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEec---CCCCC
Confidence            9999988532           2232322  234456889999998775444444557777765421   233   25666


Q ss_pred             cccccccccccCCCCeEE
Q 011654          158 FLAEGTAIQDLFNPDRVL  175 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vv  175 (480)
                      -..+++   .++..+.|+
T Consensus       264 Pl~~~~---pL~~~pnV~  278 (324)
T COG0111         264 PLPADS---PLWDLPNVI  278 (324)
T ss_pred             CCCCCC---hhhcCCCeE
Confidence            555553   344444554

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.38  E-value=5.4e-06  Score=89.03  Aligned_cols=107  Identities=11%  Similarity=0.067  Sum_probs=77.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |++|++||+....- ....                   .+.... ++++.++.||+
T Consensus       141 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~-~~~~-------------------~g~~~~-~l~ell~~aDi  197 (526)
T PRK13581        141 KTLGIIGLGRIGSEVAKRAKAF--GMKVIAYDPYISPE-RAAQ-------------------LGVELV-SLDELLARADF  197 (526)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCChh-HHHh-------------------cCCEEE-cHHHHHhhCCE
Confidence            4799999999999999999877  99999999853211 1111                   123344 78888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|....           +..+..  .+....++++.++|+.|..+.-..+.|.+.|++.
T Consensus       198 V~l~lP~t~~-----------t~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  247 (526)
T PRK13581        198 ITLHTPLTPE-----------TRGLIG--AEELAKMKPGVRIINCARGGIIDEAALAEALKSG  247 (526)
T ss_pred             EEEccCCChH-----------hhcCcC--HHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcC
Confidence            9999986422           121221  4566778999999998877666667787777764

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=98.37  E-value=4e-06  Score=83.69  Aligned_cols=117  Identities=21%  Similarity=0.247  Sum_probs=75.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEEE
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVF   83 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvVi   83 (480)
                      |+|||+|++|.++|..|+.++-..+++++|+++++++.+...        +++........++..+++++ ++++||+||
T Consensus         1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~D--------L~~~~~~~~~~~i~~~~~~~-~l~~aDiVI   71 (300)
T cd00300           1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALD--------LSHASAFLATGTIVRGGDYA-DAADADIVV   71 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHh--------HHHhccccCCCeEEECCCHH-HhCCCCEEE
Confidence            689999999999999999872126899999999988777653        22221111112345556665 599999999


Q ss_pred             EeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           84 VSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        84 i~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      +|.++|.....   ++    .-+...+++..+.|.++.+++. |++- |.|....
T Consensus        72 itag~p~~~~~---~R~~l~~~n~~i~~~~~~~i~~~~p~~~-viv~-sNP~d~~  121 (300)
T cd00300          72 ITAGAPRKPGE---TRLDLINRNAPILRSVITNLKKYGPDAI-ILVV-SNPVDIL  121 (300)
T ss_pred             EcCCCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHhCCCeE-EEEc-cChHHHH
Confidence            99998865411   11    1123345566667777774444 4432 4565543

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=98.36  E-value=6.3e-06  Score=88.52  Aligned_cols=108  Identities=15%  Similarity=0.105  Sum_probs=77.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..|...  |++|++||+.... +....                   .+....++++++++.||+
T Consensus       139 ktvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~-~~~~~-------------------~g~~~~~~l~ell~~aDv  196 (525)
T TIGR01327       139 KTLGVIGLGRIGSIVAKRAKAF--GMKVLAYDPYISP-ERAEQ-------------------LGVELVDDLDELLARADF  196 (525)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCCCCh-hHHHh-------------------cCCEEcCCHHHHHhhCCE
Confidence            4799999999999999999876  9999999984211 11111                   123445678898999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|....           +..+..  .+....++++.++|+.|..+.-..+.|.+.|++.
T Consensus       197 V~l~lPlt~~-----------T~~li~--~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  246 (525)
T TIGR01327       197 ITVHTPLTPE-----------TRGLIG--AEELAKMKKGVIIVNCARGGIIDEAALYEALEEG  246 (525)
T ss_pred             EEEccCCChh-----------hccCcC--HHHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcC
Confidence            9999985321           112221  3445578999999999887666667787777764

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=98.35  E-value=6.4e-06  Score=75.82  Aligned_cols=108  Identities=15%  Similarity=0.135  Sum_probs=72.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.+|..+|..+..-  |.+|++||++....+....                   .... ..++++.++.||+
T Consensus        37 ~tvgIiG~G~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~-------------------~~~~-~~~l~ell~~aDi   94 (178)
T PF02826_consen   37 KTVGIIGYGRIGRAVARRLKAF--GMRVIGYDRSPKPEEGADE-------------------FGVE-YVSLDELLAQADI   94 (178)
T ss_dssp             SEEEEESTSHHHHHHHHHHHHT--T-EEEEEESSCHHHHHHHH-------------------TTEE-ESSHHHHHHH-SE
T ss_pred             CEEEEEEEcCCcCeEeeeeecC--CceeEEecccCChhhhccc-------------------ccce-eeehhhhcchhhh
Confidence            4899999999999999999987  9999999998876542221                   1233 3588898999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|......     ...|        ++....++++.++|+.+--..=..+.|.+.|++.
T Consensus        95 v~~~~plt~~T~-----~li~--------~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g  144 (178)
T PF02826_consen   95 VSLHLPLTPETR-----GLIN--------AEFLAKMKPGAVLVNVARGELVDEDALLDALESG  144 (178)
T ss_dssp             EEE-SSSSTTTT-----TSBS--------HHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTT
T ss_pred             hhhhhccccccc-----eeee--------eeeeeccccceEEEeccchhhhhhhHHHHHHhhc
Confidence            999998422111     1222        2345668899999986543333334577777664

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=98.35  E-value=4.2e-06  Score=83.84  Aligned_cols=118  Identities=17%  Similarity=0.229  Sum_probs=74.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +||+|||+|.+|.++|..|+......++.++|+++++.+.....        ++..........++.++|+++ +++||+
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D--------l~~~~~~~~~~~v~~~~dy~~-~~~adi   74 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD--------LQHGSAFLKNPKIEADKDYSV-TANSKV   74 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH--------HHHhhccCCCCEEEECCCHHH-hCCCCE
Confidence            69999999999999999998874345899999998765543321        111000001124666688886 899999


Q ss_pred             EEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      ||++...|....   .++    .-+...+++..+.|.++.+++.+++.  |.|..+
T Consensus        75 vvitaG~~~k~g---~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivv--sNP~d~  125 (312)
T cd05293          75 VIVTAGARQNEG---ESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVV--SNPVDI  125 (312)
T ss_pred             EEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEc--cChHHH
Confidence            999988765431   111    11233456666777777554444443  356554

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=98.34  E-value=1.9e-06  Score=86.27  Aligned_cols=107  Identities=7%  Similarity=0.085  Sum_probs=73.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..|...  |++|++||++++...            +..         ......++++++++||+
T Consensus       137 ~tvgIvG~G~IG~~vA~~l~af--G~~V~~~~~~~~~~~------------~~~---------~~~~~~~l~e~l~~aDv  193 (312)
T PRK15469        137 FTIGILGAGVLGSKVAQSLQTW--GFPLRCWSRSRKSWP------------GVQ---------SFAGREELSAFLSQTRV  193 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCCCC------------Cce---------eecccccHHHHHhcCCE
Confidence            5899999999999999999987  999999998653211            000         01112467888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|...           ++..+.  -++....++++.++|+.+=-+.=..+.|.+.|++.
T Consensus       194 vv~~lPlt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g  243 (312)
T PRK15469        194 LINLLPNTP-----------ETVGII--NQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSG  243 (312)
T ss_pred             EEECCCCCH-----------HHHHHh--HHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcC
Confidence            999998532           222222  24566778999999986643333345576777654

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=98.34  E-value=9.1e-06  Score=81.40  Aligned_cols=119  Identities=22%  Similarity=0.252  Sum_probs=74.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +||+|||+|.+|.++|..|+.++..++++++|+++++.+.+...        +.+............+.++++ +++||+
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~d--------L~~~~~~~~~~~~i~~~~~~~-l~~aDI   71 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALD--------LEDALAFLPSPVKIKAGDYSD-CKDADI   71 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhh--------HHHHhhccCCCeEEEcCCHHH-hCCCCE
Confidence            58999999999999999999882126899999999887766432        221111000111123455554 899999


Q ss_pred             EEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      ||+|++.|....   .++    .-+...+++..+.+.++.+.+ +|++- |.|..+.
T Consensus        72 VIitag~~~~~g---~~R~dll~~N~~i~~~~~~~i~~~~~~~-~vivv-sNP~d~~  123 (306)
T cd05291          72 VVITAGAPQKPG---ETRLDLLEKNAKIMKSIVPKIKASGFDG-IFLVA-SNPVDVI  123 (306)
T ss_pred             EEEccCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEEe-cChHHHH
Confidence            999998875431   111    112334566666777776644 44332 4566543

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.30  E-value=2.2e-05  Score=73.58  Aligned_cols=41  Identities=20%  Similarity=0.186  Sum_probs=37.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+|+|+|+|.||..+|..|.+.  |++|+++|+++++++.+.+
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~--G~~Vvv~D~~~~~~~~~~~   69 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEE--GAKLIVADINEEAVARAAE   69 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence            6899999999999999999998  9999999999998887764

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=98.26  E-value=8.5e-06  Score=85.21  Aligned_cols=81  Identities=21%  Similarity=0.200  Sum_probs=59.7

Q ss_pred             cEEEEEcCChhHHHHHH--HHHH--cCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGYVGGPTMA--VIAL--KCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~--~La~--~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~   76 (480)
                      +||+|||+|.||.+++.  .++.  ..+|++|++||+++++.+.+...        +...+... ...+++.|+|+++++
T Consensus         1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~--------~~~~~~~~~~~~~I~~ttD~~eal   72 (423)
T cd05297           1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEIL--------AKKIVEELGAPLKIEATTDRREAL   72 (423)
T ss_pred             CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEeCCHHHHh
Confidence            69999999999998776  3431  12488999999999988876542        11222211 124678899999999


Q ss_pred             ccCcEEEEeccCCC
Q 011654           77 AEADIVFVSVNTPT   90 (480)
Q Consensus        77 ~~aDvVii~Vptp~   90 (480)
                      ++||+||++++...
T Consensus        73 ~~AD~Vi~ai~~~~   86 (423)
T cd05297          73 DGADFVINTIQVGG   86 (423)
T ss_pred             cCCCEEEEeeEecC
Confidence            99999999998653

linked to 3D####ucture

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=98.25  E-value=5.3e-06  Score=82.17  Aligned_cols=96  Identities=19%  Similarity=0.183  Sum_probs=70.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+|+|||+|.+|..+|..|...  |.+|+++++++++.+.+.+...                 ......++.+.+.++|+
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~--G~~V~v~~R~~~~~~~~~~~g~-----------------~~~~~~~l~~~l~~aDi  212 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSAL--GARVFVGARSSADLARITEMGL-----------------IPFPLNKLEEKVAEIDI  212 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHCCC-----------------eeecHHHHHHHhccCCE
Confidence            4799999999999999999987  8999999999987665543110                 00011345666889999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      ||.|+|.+.-                  -+...+.++++.+|++.++.|.+|-
T Consensus       213 Vint~P~~ii------------------~~~~l~~~k~~aliIDlas~Pg~td  247 (287)
T TIGR02853       213 VINTIPALVL------------------TADVLSKLPKHAVIIDLASKPGGTD  247 (287)
T ss_pred             EEECCChHHh------------------CHHHHhcCCCCeEEEEeCcCCCCCC
Confidence            9999875310                  1234456788999999988776663

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=98.24  E-value=8e-06  Score=82.22  Aligned_cols=109  Identities=21%  Similarity=0.307  Sum_probs=69.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~~~a   79 (480)
                      +||+|||+|.||..+|..++..  |+ +|+++|+++++.+.-.-..        ....... ...+++.++|++ ++++|
T Consensus         7 ~KI~IIGaG~vG~~ia~~la~~--gl~~i~LvDi~~~~~~~~~ld~--------~~~~~~~~~~~~I~~~~d~~-~l~~a   75 (321)
T PTZ00082          7 RKISLIGSGNIGGVMAYLIVLK--NLGDVVLFDIVKNIPQGKALDI--------SHSNVIAGSNSKVIGTNNYE-DIAGS   75 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCCchhhHHHHHH--------HhhhhccCCCeEEEECCCHH-HhCCC
Confidence            6899999999999999999887  74 8999999998643211000        0000000 012466678885 58999


Q ss_pred             cEEEEeccCCCCcCCCCC-----CC----CCChHHHHHHHHHHHhhCCCCCEEE
Q 011654           80 DIVFVSVNTPTKTQGLGA-----GK----AADLTYWESAARMIANVSNSNKIVV  124 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~-----~~----~~d~~~v~~~~~~i~~~l~~~~iVi  124 (480)
                      |+||++...|... +  .     ++    ..+...+++.++.+.++.+++.+++
T Consensus        76 DiVI~tag~~~~~-~--~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv  126 (321)
T PTZ00082         76 DVVIVTAGLTKRP-G--KSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIV  126 (321)
T ss_pred             CEEEECCCCCCCC-C--CCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEE
Confidence            9999998765432 0  0     00    1134456677777777776553333

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.23  E-value=7.1e-06  Score=73.03  Aligned_cols=89  Identities=17%  Similarity=0.090  Sum_probs=61.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS-RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|+|||.|..|.+.|.+|.+.  |.+|++-.+..+ ..+..++                   .+++. .+.+|+++.+|
T Consensus         5 k~IAViGyGsQG~a~AlNLrDS--G~~V~Vglr~~s~s~~~A~~-------------------~Gf~v-~~~~eAv~~aD   62 (165)
T PF07991_consen    5 KTIAVIGYGSQGHAHALNLRDS--GVNVIVGLREGSASWEKAKA-------------------DGFEV-MSVAEAVKKAD   62 (165)
T ss_dssp             SEEEEES-SHHHHHHHHHHHHC--C-EEEEEE-TTCHHHHHHHH-------------------TT-EC-CEHHHHHHC-S
T ss_pred             CEEEEECCChHHHHHHHHHHhC--CCCEEEEecCCCcCHHHHHH-------------------CCCee-ccHHHHHhhCC
Confidence            5899999999999999999998  999998887655 4444333                   23443 46788899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEec
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKS  127 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~S  127 (480)
                      +|++.+|..               ...++. ++|.+++++|++++...
T Consensus        63 vV~~L~PD~---------------~q~~vy~~~I~p~l~~G~~L~fah   95 (165)
T PF07991_consen   63 VVMLLLPDE---------------VQPEVYEEEIAPNLKPGATLVFAH   95 (165)
T ss_dssp             EEEE-S-HH---------------HHHHHHHHHHHHHS-TT-EEEESS
T ss_pred             EEEEeCChH---------------HHHHHHHHHHHhhCCCCCEEEeCC
Confidence            999998742               224555 78999999999988644

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>TIGR00112 proC pyrroline-5-carboxylate reductase

Probab=98.21  E-value=6.1e-05  Score=72.99  Aligned_cols=175  Identities=13%  Similarity=0.151  Sum_probs=101.2

Q ss_pred             CCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHH
Q 011654           26 KIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTY  105 (480)
Q Consensus        26 G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~  105 (480)
                      .++|++++|++++.+.+.+.                  -+.+.+++..+++.++|+||+||+ |.              .
T Consensus         9 ~~~I~v~~R~~e~~~~l~~~------------------~g~~~~~~~~e~~~~aDiIiLaVk-P~--------------~   55 (245)
T TIGR00112         9 AYDIIVINRSPEKLAALAKE------------------LGIVASSDAQEAVKEADVVFLAVK-PQ--------------D   55 (245)
T ss_pred             CCeEEEEcCCHHHHHHHHHH------------------cCcEEeCChHHHHhhCCEEEEEeC-HH--------------H
Confidence            47899999999998877542                  024556777777889999999998 52              3


Q ss_pred             HHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccccccccccccCCCCeEEEEeCCCcchH
Q 011654          106 WESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQ  185 (480)
Q Consensus       106 v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~  185 (480)
                      +.+++.++.+.+.++++||.  ....-+.+.|.+.+....     .+    .|..|..+..- ......+..+.  ..++
T Consensus        56 i~~vl~~l~~~~~~~~~ivS--~~agi~~~~l~~~~~~~~-----~i----vR~mPn~~~~~-~~g~t~~~~~~--~~~~  121 (245)
T TIGR00112        56 LEEVLSELKSEKGKDKLLIS--IAAGVTLEKLSQLLGGTR-----RV----VRVMPNTPAKV-GAGVTAIAANA--NVSE  121 (245)
T ss_pred             HHHHHHHHhhhccCCCEEEE--ecCCCCHHHHHHHcCCCC-----eE----EEECCChHHHH-hCCeEEEecCC--CCCH
Confidence            67788888877766777763  333333445555553211     11    12333222111 11112222222  2245


Q ss_pred             HHHHHHHHHHhccCCCCeEEeCC--hhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc
Q 011654          186 KAIQALKDVYAHWVPEDRIITTN--LWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIG  252 (480)
Q Consensus       186 ~~~~~~~~l~~~~~~~~~v~~~~--~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~  252 (480)
                      +..+.++++|+.++  ..+.+..  ...+...-=...+|   ...++..+..-+.+.|++.++..+++.
T Consensus       122 ~~~~~v~~lf~~~G--~~~~v~E~~~~~~talsgsgPA~---~~~~~~al~~~~v~~Gl~~~~A~~lv~  185 (245)
T TIGR00112       122 EDRALVLALFKAVG--EVVELPEALMDAVTALSGSGPAY---VFLFIEALADAGVKQGLPRELALELAA  185 (245)
T ss_pred             HHHHHHHHHHHhCC--CEEEECHHHcchHHhhccCcHHH---HHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            67789999999985  3444421  11111111122233   344555666678888999988887765

This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs.

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=98.20  E-value=9.2e-06  Score=79.57  Aligned_cols=120  Identities=23%  Similarity=0.296  Sum_probs=78.6

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            4 ICCIGA-GYVGGPTMAVIALKC--PKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         4 I~VIGl-G~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |+|||+ |.||..+|..|+..+  ...+++++|+++++.+.....        ++++.......++++++|+.+++++||
T Consensus         1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~d--------l~~~~~~~~~~~i~~~~d~~~~~~~aD   72 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMD--------LQDAVEPLADIKVSITDDPYEAFKDAD   72 (263)
T ss_pred             CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHH--------HHHhhhhccCcEEEECCchHHHhCCCC
Confidence            689999 999999999999872  227999999998776654431        111111111236778888778899999


Q ss_pred             EEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      +||++...+... +  .++    .-+...+++..+.+.++.+ +.++++- |.|.+....
T Consensus        73 iVv~t~~~~~~~-g--~~r~~~~~~n~~i~~~i~~~i~~~~p-~a~~i~~-tNP~d~~t~  127 (263)
T cd00650          73 VVIITAGVGRKP-G--MGRLDLLKRNVPIVKEIGDNIEKYSP-DAWIIVV-SNPVDIITY  127 (263)
T ss_pred             EEEECCCCCCCc-C--CCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEEe-cCcHHHHHH
Confidence            999987655432 1  010    1233456777778888775 4445443 567665443

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.18  E-value=5.5e-06  Score=81.68  Aligned_cols=73  Identities=26%  Similarity=0.346  Sum_probs=57.5

Q ss_pred             cEEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAG-YVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|||.| .||.|||..|.++  |++|++|++.                                 +.++++.+++||
T Consensus       160 k~V~vIG~s~ivG~PmA~~L~~~--gatVtv~~~~---------------------------------t~~l~e~~~~AD  204 (301)
T PRK14194        160 KHAVVIGRSNIVGKPMAALLLQA--HCSVTVVHSR---------------------------------STDAKALCRQAD  204 (301)
T ss_pred             CEEEEECCCCccHHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhcCC
Confidence            479999996 9999999999998  9999999853                                 125677789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv  129 (480)
                      +||.|++.|..              +...      .+++|++||+.|+.
T Consensus       205 IVIsavg~~~~--------------v~~~------~ik~GaiVIDvgin  233 (301)
T PRK14194        205 IVVAAVGRPRL--------------IDAD------WLKPGAVVIDVGIN  233 (301)
T ss_pred             EEEEecCChhc--------------ccHh------hccCCcEEEEeccc
Confidence            99999987532              1211      27899999987653

>PRK15076 alpha-galactosidase; Provisional

Probab=98.16  E-value=1.9e-05  Score=82.62  Aligned_cols=81  Identities=22%  Similarity=0.187  Sum_probs=57.9

Q ss_pred             CcEEEEEcCChhHHHHHH--HHH--HcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHH
Q 011654            1 MVKICCIGAGYVGGPTMA--VIA--LKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKH   75 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~--~La--~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a   75 (480)
                      ||||+|||+|.||.+.+.  .++  ...++.+|+++|+++++.+....-        +...+... ...+++.|+|..++
T Consensus         1 ~~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l--------~~~~~~~~~~~~~i~~ttD~~ea   72 (431)
T PRK15076          1 MPKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIV--------ARKLAESLGASAKITATTDRREA   72 (431)
T ss_pred             CcEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEECCHHHH
Confidence            689999999999977766  554  223577999999999887743220        11111111 12357889998888


Q ss_pred             hccCcEEEEeccCC
Q 011654           76 VAEADIVFVSVNTP   89 (480)
Q Consensus        76 ~~~aDvVii~Vptp   89 (480)
                      +++||+||+++..+
T Consensus        73 l~dADfVv~ti~vg   86 (431)
T PRK15076         73 LQGADYVINAIQVG   86 (431)
T ss_pred             hCCCCEEeEeeeeC
Confidence            99999999998764

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=98.15  E-value=4e-05  Score=75.10  Aligned_cols=152  Identities=14%  Similarity=0.083  Sum_probs=90.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~aD   80 (480)
                      .+|||||.|.||.-+|..|.++  ||.|+..||.+  .+.+.+..               ..+.+   +++.+.+ +..|
T Consensus        53 l~IaIIGfGnmGqflAetli~a--Gh~li~hsRsd--yssaa~~y---------------g~~~f---t~lhdlcerhpD  110 (480)
T KOG2380|consen   53 LVIAIIGFGNMGQFLAETLIDA--GHGLICHSRSD--YSSAAEKY---------------GSAKF---TLLHDLCERHPD  110 (480)
T ss_pred             eEEEEEecCcHHHHHHHHHHhc--CceeEecCcch--hHHHHHHh---------------ccccc---ccHHHHHhcCCC
Confidence            3799999999999999999999  99999999976  33333210               01122   3344323 6899


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhh-CCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeE---eeCC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV-SNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQI---LSNP  156 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v---~~~P  156 (480)
                      +|+.||..               ..++.+++..... ++.+++++...++..-....+.+.|.+.   .|+-+   .++|
T Consensus       111 vvLlctsi---------------lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPkd---fDIlctHpmfGP  172 (480)
T KOG2380|consen  111 VVLLCTSI---------------LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPKD---FDILCTHPMFGP  172 (480)
T ss_pred             EEEEEehh---------------hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCccc---cceEeecCCcCC
Confidence            99999752               2245666665554 7789999876555322223344555442   23221   2344


Q ss_pred             ccccccccccccCCCCeEE----EEeCCCcchHHHHHHHHHHHhccCC
Q 011654          157 EFLAEGTAIQDLFNPDRVL----IGGRETPEGQKAIQALKDVYAHWVP  200 (480)
Q Consensus       157 e~~~~G~a~~~~~~~~~vv----iG~~~~~~~~~~~~~~~~l~~~~~~  200 (480)
                      +...++     ....|-|+    +|-  ....++.++.+.++|.....
T Consensus       173 ksvnh~-----wqglpfVydkvRig~--~~~r~ercE~fleIf~cegc  213 (480)
T KOG2380|consen  173 KSVNHE-----WQGLPFVYDKVRIGY--AASRPERCEFFLEIFACEGC  213 (480)
T ss_pred             CcCCCc-----cccCceEEEEeeccc--cccchHHHHHHHHHHHhcCC
Confidence            432222     11122222    331  12236789999999998753

>PLN02928 oxidoreductase family protein

Probab=98.15  E-value=2.6e-05  Score=79.38  Aligned_cols=120  Identities=14%  Similarity=0.076  Sum_probs=73.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..|...  |.+|++||++...-....-+   +.......+..   .. . ...+++++++.||+
T Consensus       160 ktvGIiG~G~IG~~vA~~l~af--G~~V~~~dr~~~~~~~~~~~---~~~~~~~~~~~---~~-~-~~~~L~ell~~aDi  229 (347)
T PLN02928        160 KTVFILGYGAIGIELAKRLRPF--GVKLLATRRSWTSEPEDGLL---IPNGDVDDLVD---EK-G-GHEDIYEFAGEADI  229 (347)
T ss_pred             CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCChhhhhhhc---ccccccccccc---cc-C-cccCHHHHHhhCCE
Confidence            5899999999999999999876  99999999873221110000   00000011100   00 1 13478888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|....           +..+.  -++....++++.++|+.+--+.=..+.|.+.|++.
T Consensus       230 Vvl~lPlt~~-----------T~~li--~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g  279 (347)
T PLN02928        230 VVLCCTLTKE-----------TAGIV--NDEFLSSMKKGALLVNIARGGLLDYDAVLAALESG  279 (347)
T ss_pred             EEECCCCChH-----------hhccc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence            9999985321           11121  13455668999999987643332344566666653

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=98.14  E-value=2.7e-05  Score=80.95  Aligned_cols=105  Identities=16%  Similarity=0.139  Sum_probs=75.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|||||+|.+|..+|..+..-  |.+|++||+.+..    ..                   +......++++.++.||+
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~f--Gm~V~~~d~~~~~----~~-------------------~~~~~~~~l~ell~~sDi  206 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESL--GMRVYFYDIEDKL----PL-------------------GNARQVGSLEELLAQSDV  206 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCccc----cc-------------------CCceecCCHHHHHhhCCE
Confidence            4799999999999999999876  9999999985321    00                   123345678999999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |.+++|...           ++..+.  -++....++++.++|+.|-.+.=..+.|.+.|++.
T Consensus       207 Vslh~Plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g  256 (409)
T PRK11790        207 VSLHVPETP-----------STKNMI--GAEELALMKPGAILINASRGTVVDIDALADALKSG  256 (409)
T ss_pred             EEEcCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcC
Confidence            999998422           222222  13455668999999998766555566677777654

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=98.14  E-value=1.1e-05  Score=82.64  Aligned_cols=108  Identities=16%  Similarity=0.138  Sum_probs=74.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|||||+|.||..+|..+...  |++|++||+.....    .+                   ... ..++++.+++||+
T Consensus       117 ktvGIIG~G~IG~~va~~l~a~--G~~V~~~Dp~~~~~----~~-------------------~~~-~~~l~ell~~aDi  170 (381)
T PRK00257        117 RTYGVVGAGHVGGRLVRVLRGL--GWKVLVCDPPRQEA----EG-------------------DGD-FVSLERILEECDV  170 (381)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCccccc----cc-------------------Ccc-ccCHHHHHhhCCE
Confidence            4799999999999999999987  99999999753211    00                   111 2468888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|-..+.       ...+..+.  -++....++++.++|+.|..+.-..+.|.+.|++.
T Consensus       171 V~lh~Plt~~g-------~~~T~~li--~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g  224 (381)
T PRK00257        171 ISLHTPLTKEG-------EHPTRHLL--DEAFLASLRPGAWLINASRGAVVDNQALREALLSG  224 (381)
T ss_pred             EEEeCcCCCCc-------cccccccC--CHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence            99999853210       01111221  13455668999999998877666666777777653

>PLN02602 lactate dehydrogenase

Probab=98.12  E-value=2.7e-05  Score=79.07  Aligned_cols=120  Identities=18%  Similarity=0.254  Sum_probs=73.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +||+|||+|.+|.++|..|+.+....++.++|+++++.+.....        +.........-.++.++++++ +++||+
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~D--------L~~~~~~~~~~~i~~~~dy~~-~~daDi  108 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLD--------LQHAAAFLPRTKILASTDYAV-TAGSDL  108 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHH--------HHhhhhcCCCCEEEeCCCHHH-hCCCCE
Confidence            59999999999999999998773334899999998765544321        111110000113444467776 899999


Q ss_pred             EEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      ||++...|....   .++    .-+...+++..+.|.++.+++.+|+.  |.|..+.-
T Consensus       109 VVitAG~~~k~g---~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivv--tNPvdv~t  161 (350)
T PLN02602        109 CIVTAGARQIPG---ESRLNLLQRNVALFRKIIPELAKYSPDTILLIV--SNPVDVLT  161 (350)
T ss_pred             EEECCCCCCCcC---CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cCchHHHH
Confidence            999987765431   111    11234455666777777655544443  45655543

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=98.11  E-value=2.7e-05  Score=77.84  Aligned_cols=119  Identities=18%  Similarity=0.237  Sum_probs=72.1

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhc-CCCEEE-ecCHHHHhccCc
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR-GRNLFF-STDIEKHVAEAD   80 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~-~~~l~~-t~d~~~a~~~aD   80 (480)
                      ||+|||+|.+|.++|..|+.+...-++.++|+++++.+.....        +.... ... ..+.+. +.++++ +++||
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D--------L~~~~-~~~~~~~~~i~~~~y~~-~~~aD   70 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD--------FHHAT-ALTYSTNTKIRAGDYDD-CADAD   70 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH--------HHhhh-ccCCCCCEEEEECCHHH-hCCCC
Confidence            7999999999999999998873234899999987765433211        00000 000 112222 456654 99999


Q ss_pred             EEEEeccCCCCcCCCCCCC------CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           81 IVFVSVNTPTKTQGLGAGK------AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~------~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      +||++...|..+.   .++      ..+.+.+++....+.++.+.+.+++  -|.|..+.-.
T Consensus        71 ivvitaG~~~kpg---~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~iv--vsNPvDv~t~  127 (307)
T cd05290          71 IIVITAGPSIDPG---NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIIL--ITNPLDIAVY  127 (307)
T ss_pred             EEEECCCCCCCCC---CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--ecCcHHHHHH
Confidence            9999988765431   111      1233455666667777765444333  4667665443

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.11  E-value=2.2e-05  Score=78.22  Aligned_cols=95  Identities=15%  Similarity=0.239  Sum_probs=69.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .||+|||.|.+|.+++..|...  |.+|+++|+++++.+...+-..                 .....+++.+.+.++|+
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~--Ga~V~v~~r~~~~~~~~~~~G~-----------------~~~~~~~l~~~l~~aDi  213 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKAL--GANVTVGARKSAHLARITEMGL-----------------SPFHLSELAEEVGKIDI  213 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCC-----------------eeecHHHHHHHhCCCCE
Confidence            5899999999999999999987  8999999999887665543110                 01111345666789999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      ||.|+|.+.                  ..+...+.++++.+|++.++.+.++
T Consensus       214 VI~t~p~~~------------------i~~~~l~~~~~g~vIIDla~~pggt  247 (296)
T PRK08306        214 IFNTIPALV------------------LTKEVLSKMPPEALIIDLASKPGGT  247 (296)
T ss_pred             EEECCChhh------------------hhHHHHHcCCCCcEEEEEccCCCCc
Confidence            999987421                  1234456678899999888776664

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=98.10  E-value=7.3e-05  Score=74.99  Aligned_cols=103  Identities=15%  Similarity=0.114  Sum_probs=69.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|||||+|.+|..+|..+..-  |.+|++||+.....    .                   ..+.. .++++.++.||+
T Consensus       146 ktvGIiG~G~IG~~vA~~~~~f--gm~V~~~d~~~~~~----~-------------------~~~~~-~~l~ell~~sDv  199 (311)
T PRK08410        146 KKWGIIGLGTIGKRVAKIAQAF--GAKVVYYSTSGKNK----N-------------------EEYER-VSLEELLKTSDI  199 (311)
T ss_pred             CEEEEECCCHHHHHHHHHHhhc--CCEEEEECCCcccc----c-------------------cCcee-ecHHHHhhcCCE
Confidence            4799999999999999988765  89999999853210    0                   01222 368888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHh
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTH  143 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~  143 (480)
                      |++++|-...           +..+.  -++....++++.++|+.+=-+.=..+.|.+.|++
T Consensus       200 v~lh~Plt~~-----------T~~li--~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~  248 (311)
T PRK08410        200 ISIHAPLNEK-----------TKNLI--AYKELKLLKDGAILINVGRGGIVNEKDLAKALDE  248 (311)
T ss_pred             EEEeCCCCch-----------hhccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHc
Confidence            9999984321           11111  1234456899999998664333334557677765

>PTZ00117 malate dehydrogenase; Provisional

Probab=98.08  E-value=1.7e-05  Score=79.88  Aligned_cols=116  Identities=19%  Similarity=0.254  Sum_probs=72.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~~~a   79 (480)
                      +||+|||+|.||..+|..++..  | .++.++|+++++.+...-..        ....... ...+++.++|++ ++++|
T Consensus         6 ~KI~IIGaG~vG~~ia~~l~~~--~~~~l~L~Di~~~~~~g~~lDl--------~~~~~~~~~~~~i~~~~d~~-~l~~A   74 (319)
T PTZ00117          6 KKISMIGAGQIGSTVALLILQK--NLGDVVLYDVIKGVPQGKALDL--------KHFSTLVGSNINILGTNNYE-DIKDS   74 (319)
T ss_pred             cEEEEECCCHHHHHHHHHHHHC--CCCeEEEEECCCccchhHHHHH--------hhhccccCCCeEEEeCCCHH-HhCCC
Confidence            6999999999999999999887  6 68999999987644221100        0000000 012456667887 68999


Q ss_pred             cEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           80 DIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      |+||++...|....   .++    ..+...+++..+.+.++.++..+++.  |.|...
T Consensus        75 DiVVitag~~~~~g---~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivv--sNP~di  127 (319)
T PTZ00117         75 DVVVITAGVQRKEE---MTREDLLTINGKIMKSVAESVKKYCPNAFVICV--TNPLDC  127 (319)
T ss_pred             CEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--cChHHH
Confidence            99999996543220   000    11224456777788888755544443  455543

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=98.06  E-value=6.8e-05  Score=75.57  Aligned_cols=108  Identities=14%  Similarity=0.129  Sum_probs=71.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +++||||+|.+|..+|..+...+ |.+|.+||+....-. ...                   .+.+. .++++.++.||+
T Consensus       146 ktvGIiG~G~IG~~va~~l~~~f-gm~V~~~~~~~~~~~-~~~-------------------~~~~~-~~l~ell~~sDv  203 (323)
T PRK15409        146 KTLGIVGMGRIGMALAQRAHFGF-NMPILYNARRHHKEA-EER-------------------FNARY-CDLDTLLQESDF  203 (323)
T ss_pred             CEEEEEcccHHHHHHHHHHHhcC-CCEEEEECCCCchhh-HHh-------------------cCcEe-cCHHHHHHhCCE
Confidence            57999999999999999886223 889999997532110 000                   01233 378888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|-..           ++..+.  -++....++++.++|+.+=-+.=..+.|.+.|++.
T Consensus       204 v~lh~plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g  253 (323)
T PRK15409        204 VCIILPLTD-----------ETHHLF--GAEQFAKMKSSAIFINAGRGPVVDENALIAALQKG  253 (323)
T ss_pred             EEEeCCCCh-----------HHhhcc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence            999998532           222222  13455668999999986643333345577777654

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=98.05  E-value=9e-05  Score=74.46  Aligned_cols=107  Identities=15%  Similarity=0.126  Sum_probs=74.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +++||||+|.+|..+|.++.. + |.+|..||+.+. -+.-..                   .+.++.. +++.++.||+
T Consensus       147 ktvGIiG~GrIG~avA~r~~~-F-gm~v~y~~~~~~-~~~~~~-------------------~~~~y~~-l~ell~~sDi  203 (324)
T COG1052         147 KTLGIIGLGRIGQAVARRLKG-F-GMKVLYYDRSPN-PEAEKE-------------------LGARYVD-LDELLAESDI  203 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHhc-C-CCEEEEECCCCC-hHHHhh-------------------cCceecc-HHHHHHhCCE
Confidence            589999999999999999994 4 899999999864 111111                   2245555 8888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |.+.+|-.           +++..+..  ....+.++++.++|+.+=-+.=..+.+.+.|++.
T Consensus       204 i~l~~Plt-----------~~T~hLin--~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g  253 (324)
T COG1052         204 ISLHCPLT-----------PETRHLIN--AEELAKMKPGAILVNTARGGLVDEQALIDALKSG  253 (324)
T ss_pred             EEEeCCCC-----------hHHhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHhC
Confidence            99998853           23333322  3456678999999986643333345566777664

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=98.04  E-value=4.1e-05  Score=76.91  Aligned_cols=115  Identities=20%  Similarity=0.308  Sum_probs=70.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-ecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-STDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t~d~~~a~~~   78 (480)
                      +||+|||+|.+|.++|..|+..  |.  ++.++|+++++.+.....        +..... .. .+.+. +++++ ++++
T Consensus         7 ~ki~iiGaG~vG~~~a~~l~~~--~~~~el~L~D~~~~~~~g~~~D--------l~~~~~-~~-~~~~i~~~~~~-~~~~   73 (315)
T PRK00066          7 NKVVLVGDGAVGSSYAYALVNQ--GIADELVIIDINKEKAEGDAMD--------LSHAVP-FT-SPTKIYAGDYS-DCKD   73 (315)
T ss_pred             CEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEeCCCchhHHHHHH--------HHhhcc-cc-CCeEEEeCCHH-HhCC
Confidence            5899999999999999999887  55  899999998876554421        111100 00 12222 45555 4899


Q ss_pred             CcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      ||+||++...|..+.   .++    ..+...+++.++.+.++.+.+.+++.  |.|..+.
T Consensus        74 adivIitag~~~k~g---~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivv--sNP~d~~  128 (315)
T PRK00066         74 ADLVVITAGAPQKPG---ETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVA--SNPVDIL  128 (315)
T ss_pred             CCEEEEecCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEc--cCcHHHH
Confidence            999999988765431   111    11233455666667666654444332  4565543

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=98.02  E-value=4.7e-05  Score=75.47  Aligned_cols=121  Identities=23%  Similarity=0.308  Sum_probs=74.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|.+|.++|..|.....+.++.++|+++++.+.....        +.....-. ...++..+.++++ ++++|
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~D--------L~~~~~~~~~~~~i~~~~~y~~-~~~aD   71 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALD--------LSHAAAPLGSDVKITGDGDYED-LKGAD   71 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEcccccccchhcc--------hhhcchhccCceEEecCCChhh-hcCCC
Confidence            79999999999999999997765566999999985443321111        11110000 0122223234655 89999


Q ss_pred             EEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      +|+|+..-|..+.   .++    .-+.+.+++..+++.++.+++.++|  -|.|..+.-.
T Consensus        72 iVvitAG~prKpG---mtR~DLl~~Na~I~~~i~~~i~~~~~d~ivlV--vtNPvD~~ty  126 (313)
T COG0039          72 IVVITAGVPRKPG---MTRLDLLEKNAKIVKDIAKAIAKYAPDAIVLV--VTNPVDILTY  126 (313)
T ss_pred             EEEEeCCCCCCCC---CCHHHHHHhhHHHHHHHHHHHHhhCCCeEEEE--ecCcHHHHHH
Confidence            9999997776441   111    2234556666777777777444444  4778776544

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.99  E-value=2.8e-05  Score=78.16  Aligned_cols=75  Identities=20%  Similarity=0.221  Sum_probs=56.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+|+|||+|.||..++..+....+..+|++|+|++++.+.+.+..            .+ ....+....++++++.+||+
T Consensus       126 ~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~------------~~-~g~~~~~~~~~~~av~~aDI  192 (314)
T PRK06141        126 SRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAEL------------RA-QGFDAEVVTDLEAAVRQADI  192 (314)
T ss_pred             ceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH------------Hh-cCCceEEeCCHHHHHhcCCE
Confidence            479999999999999987765323689999999999988876420            00 01135667888888999999


Q ss_pred             EEEeccCC
Q 011654           82 VFVSVNTP   89 (480)
Q Consensus        82 Vii~Vptp   89 (480)
                      |+.|++.+
T Consensus       193 Vi~aT~s~  200 (314)
T PRK06141        193 ISCATLST  200 (314)
T ss_pred             EEEeeCCC
Confidence            98887643

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.97  E-value=3.7e-05  Score=77.61  Aligned_cols=100  Identities=14%  Similarity=0.070  Sum_probs=70.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+++|||+|.+|...+..|....+..+|.+||+++++.+.+.+..            .+. .-.+..++++++++++||+
T Consensus       129 ~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~------------~~~-g~~v~~~~~~~eav~~aDi  195 (325)
T TIGR02371       129 SVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRA------------SDY-EVPVRAATDPREAVEGCDI  195 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------Hhh-CCcEEEeCCHHHHhccCCE
Confidence            479999999999998887766444679999999999988776420            000 1135678899999999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      |++|+|+.. +       ..+           ...+++|+.|...++..|+.
T Consensus       196 VitaT~s~~-P-------~~~-----------~~~l~~g~~v~~vGs~~p~~  228 (325)
T TIGR02371       196 LVTTTPSRK-P-------VVK-----------ADWVSEGTHINAIGADAPGK  228 (325)
T ss_pred             EEEecCCCC-c-------Eec-----------HHHcCCCCEEEecCCCCccc
Confidence            999987531 1       011           23468899887655555543

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=97.95  E-value=3.8e-05  Score=78.56  Aligned_cols=108  Identities=16%  Similarity=0.135  Sum_probs=71.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|||||+|.||..+|..|..-  |.+|++||+....     .+                  .... ..++++.+++||+
T Consensus       117 ktvGIIG~G~IG~~vA~~l~a~--G~~V~~~dp~~~~-----~~------------------~~~~-~~~L~ell~~sDi  170 (378)
T PRK15438        117 RTVGIVGVGNVGRRLQARLEAL--GIKTLLCDPPRAD-----RG------------------DEGD-FRSLDELVQEADI  170 (378)
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCcccc-----cc------------------cccc-cCCHHHHHhhCCE
Confidence            5899999999999999999877  9999999964210     01                  0011 2468888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|-..+  +     ...+..+.  -++....+++++++|+.|=-+.=..+.|.+.|++.
T Consensus       171 I~lh~PLt~~--g-----~~~T~~li--~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g  224 (378)
T PRK15438        171 LTFHTPLFKD--G-----PYKTLHLA--DEKLIRSLKPGAILINACRGAVVDNTALLTCLNEG  224 (378)
T ss_pred             EEEeCCCCCC--c-----cccccccc--CHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhC
Confidence            9999884321  0     01111111  13455668999999987644433445566666653

>PLN02306 hydroxypyruvate reductase

Probab=97.91  E-value=0.00026  Score=72.93  Aligned_cols=122  Identities=16%  Similarity=0.141  Sum_probs=72.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR-IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|||||+|.+|..+|..+.+.+ |.+|++||+.... .+......    ..++...-.  .....+...+++++++.||
T Consensus       166 ktvGIiG~G~IG~~vA~~l~~~f-Gm~V~~~d~~~~~~~~~~~~~~----~~~l~~~~~--~~~~~~~~~~L~ell~~sD  238 (386)
T PLN02306        166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQSTRLEKFVTAY----GQFLKANGE--QPVTWKRASSMEEVLREAD  238 (386)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcC-CCEEEEECCCCchhhhhhhhhh----ccccccccc--ccccccccCCHHHHHhhCC
Confidence            47999999999999999986433 8999999987532 11110000    000000000  0001233468899999999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHh
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTH  143 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~  143 (480)
                      +|++++|-..           ++..+..  .+....++++.++|+.+--+.=..+.|.+.|++
T Consensus       239 iV~lh~Plt~-----------~T~~lin--~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~s  288 (386)
T PLN02306        239 VISLHPVLDK-----------TTYHLIN--KERLALMKKEAVLVNASRGPVIDEVALVEHLKA  288 (386)
T ss_pred             EEEEeCCCCh-----------hhhhhcC--HHHHHhCCCCeEEEECCCccccCHHHHHHHHHh
Confidence            9999988421           2222221  345566899999998663322233456666665

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=97.91  E-value=6.6e-05  Score=76.64  Aligned_cols=135  Identities=18%  Similarity=0.103  Sum_probs=84.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE--ecCHHHHhc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF--STDIEKHVA   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~--t~d~~~a~~   77 (480)
                      ||||.|||+|.+|.+.|..|+.+  | .+|++.||+.++++++......    .++.       -.+.+  ...+.++++
T Consensus         1 m~~ilviGaG~Vg~~va~~la~~--~d~~V~iAdRs~~~~~~i~~~~~~----~v~~-------~~vD~~d~~al~~li~   67 (389)
T COG1748           1 MMKILVIGAGGVGSVVAHKLAQN--GDGEVTIADRSKEKCARIAELIGG----KVEA-------LQVDAADVDALVALIK   67 (389)
T ss_pred             CCcEEEECCchhHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHhhccc----ccee-------EEecccChHHHHHHHh
Confidence            79999999999999999999998  6 8999999999999988653110    0000       00111  123456788


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHH----------------HHhh-CCCCCEEEEecCCccchHHHHHHH
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARM----------------IANV-SNSNKIVVEKSTVPVKTAEAIEKI  140 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~----------------i~~~-l~~~~iVi~~STv~~gt~~~l~~~  140 (480)
                      +.|+||-|.|-+.           +.+.++++++.                +.+. -+.|.+++....+.||.+-.+...
T Consensus        68 ~~d~VIn~~p~~~-----------~~~i~ka~i~~gv~yvDts~~~~~~~~~~~~a~~Agit~v~~~G~dPGi~nv~a~~  136 (389)
T COG1748          68 DFDLVINAAPPFV-----------DLTILKACIKTGVDYVDTSYYEEPPWKLDEEAKKAGITAVLGCGFDPGITNVLAAY  136 (389)
T ss_pred             cCCEEEEeCCchh-----------hHHHHHHHHHhCCCEEEcccCCchhhhhhHHHHHcCeEEEcccCcCcchHHHHHHH
Confidence            9999999998543           33434333322                1111 134666777778888887665433


Q ss_pred             H-HhcC-C--CCceeEeeCCccc
Q 011654          141 L-THNS-R--EIKYQILSNPEFL  159 (480)
Q Consensus       141 l-~~~~-~--g~~~~v~~~Pe~~  159 (480)
                      . ++.. .  ..+..++..|++.
T Consensus       137 a~~~~~~~i~si~iy~g~~g~~~  159 (389)
T COG1748         137 AAKELFDEIESIDIYVGGLGEHG  159 (389)
T ss_pred             HHHHhhccccEEEEEEecCCCCC
Confidence            3 2222 1  2344555566544

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=97.90  E-value=0.00011  Score=63.54  Aligned_cols=73  Identities=22%  Similarity=0.295  Sum_probs=48.1

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|+|+ |.||..++..+.+. +++++. ++|++++..          ...++.++... ...++.+++++++.+..+
T Consensus         1 mrV~i~G~~GrMG~~i~~~i~~~-~~~~lv~~v~~~~~~~----------~g~d~g~~~~~-~~~~~~v~~~l~~~~~~~   68 (124)
T PF01113_consen    1 MRVGIVGASGRMGRAIAEAILES-PGFELVGAVDRKPSAK----------VGKDVGELAGI-GPLGVPVTDDLEELLEEA   68 (124)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHS-TTEEEEEEEETTTSTT----------TTSBCHHHCTS-ST-SSBEBS-HHHHTTH-
T ss_pred             CEEEEECCCCHHHHHHHHHHHhc-CCcEEEEEEecCCccc----------ccchhhhhhCc-CCcccccchhHHHhcccC
Confidence            79999999 99999999999985 488855 578765211          01112222110 123456789999988899


Q ss_pred             cEEEEec
Q 011654           80 DIVFVSV   86 (480)
Q Consensus        80 DvVii~V   86 (480)
                      |++|-..
T Consensus        69 DVvIDfT   75 (124)
T PF01113_consen   69 DVVIDFT   75 (124)
T ss_dssp             SEEEEES
T ss_pred             CEEEEcC
Confidence            9999885

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK06932 glycerate dehydrogenase; Provisional

Probab=97.89  E-value=0.00012  Score=73.47  Aligned_cols=103  Identities=13%  Similarity=0.121  Sum_probs=69.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.+|..+|..+..-  |.+|++||+....  ..                      ... ..++++.++.||+
T Consensus       148 ktvgIiG~G~IG~~va~~l~~f--g~~V~~~~~~~~~--~~----------------------~~~-~~~l~ell~~sDi  200 (314)
T PRK06932        148 STLGVFGKGCLGTEVGRLAQAL--GMKVLYAEHKGAS--VC----------------------REG-YTPFEEVLKQADI  200 (314)
T ss_pred             CEEEEECCCHHHHHHHHHHhcC--CCEEEEECCCccc--cc----------------------ccc-cCCHHHHHHhCCE
Confidence            4899999999999999988765  8999999974310  00                      001 1367888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|-..           ++..+.  -++....++++.++|+.+=-..=..+.|.+.|++.
T Consensus       201 v~l~~Plt~-----------~T~~li--~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g  250 (314)
T PRK06932        201 VTLHCPLTE-----------TTQNLI--NAETLALMKPTAFLINTGRGPLVDEQALLDALENG  250 (314)
T ss_pred             EEEcCCCCh-----------HHhccc--CHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence            999998422           111121  13445568999999986643333345577777653

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.89  E-value=3.8e-05  Score=75.92  Aligned_cols=71  Identities=18%  Similarity=0.331  Sum_probs=55.5

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEe-CCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVD-ISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D-~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      .+|+||| .|.||.|||..|.++  |++|++|+ ++                                  .+++++++.|
T Consensus       159 k~V~viGrs~~mG~PmA~~L~~~--g~tVtv~~~rT----------------------------------~~l~e~~~~A  202 (296)
T PRK14188        159 LNAVVIGRSNLVGKPMAQLLLAA--NATVTIAHSRT----------------------------------RDLPAVCRRA  202 (296)
T ss_pred             CEEEEEcCCcchHHHHHHHHHhC--CCEEEEECCCC----------------------------------CCHHHHHhcC
Confidence            4799999 999999999999998  99999996 32                                  1345667899


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      |+||.|++.+..              +.+      .++++|++||+.++
T Consensus       203 DIVIsavg~~~~--------------v~~------~~lk~GavVIDvGi  231 (296)
T PRK14188        203 DILVAAVGRPEM--------------VKG------DWIKPGATVIDVGI  231 (296)
T ss_pred             CEEEEecCChhh--------------cch------heecCCCEEEEcCC
Confidence            999999987521              122      12788999997654

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=97.82  E-value=0.00011  Score=71.82  Aligned_cols=67  Identities=24%  Similarity=0.402  Sum_probs=49.6

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      ||||+|||+ |.||..++..+.+. +++++.+ +|+++++.... .                  ..++..++|+++.+++
T Consensus         1 ~mkV~IiG~~G~mG~~i~~~l~~~-~~~elvav~d~~~~~~~~~-~------------------~~~i~~~~dl~~ll~~   60 (257)
T PRK00048          1 MIKVAVAGASGRMGRELIEAVEAA-EDLELVAAVDRPGSPLVGQ-G------------------ALGVAITDDLEAVLAD   60 (257)
T ss_pred             CcEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCcccccc-C------------------CCCccccCCHHHhccC
Confidence            689999998 99999999888764 4778665 88887654322 0                  0124456788887778


Q ss_pred             CcEEEEecc
Q 011654           79 ADIVFVSVN   87 (480)
Q Consensus        79 aDvVii~Vp   87 (480)
                      +|+|+.++|
T Consensus        61 ~DvVid~t~   69 (257)
T PRK00048         61 ADVLIDFTT   69 (257)
T ss_pred             CCEEEECCC
Confidence            999998864

>PRK06487 glycerate dehydrogenase; Provisional

Probab=97.81  E-value=0.00024  Score=71.53  Aligned_cols=102  Identities=8%  Similarity=0.102  Sum_probs=69.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.+|..+|..+..-  |.+|++||+...      ..                   ... ..++++.++.||+
T Consensus       149 ktvgIiG~G~IG~~vA~~l~~f--gm~V~~~~~~~~------~~-------------------~~~-~~~l~ell~~sDi  200 (317)
T PRK06487        149 KTLGLLGHGELGGAVARLAEAF--GMRVLIGQLPGR------PA-------------------RPD-RLPLDELLPQVDA  200 (317)
T ss_pred             CEEEEECCCHHHHHHHHHHhhC--CCEEEEECCCCC------cc-------------------ccc-ccCHHHHHHhCCE
Confidence            4799999999999999998765  899999997521      00                   011 1367888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|-..           ++..+.  -++....++++.++|+.+=-+.=..+.|.+.|++.
T Consensus       201 v~l~lPlt~-----------~T~~li--~~~~~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g  250 (317)
T PRK06487        201 LTLHCPLTE-----------HTRHLI--GARELALMKPGALLINTARGGLVDEQALADALRSG  250 (317)
T ss_pred             EEECCCCCh-----------HHhcCc--CHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcC
Confidence            999998432           112121  13345568899999986643333345576777653

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.80  E-value=0.00012  Score=73.44  Aligned_cols=71  Identities=24%  Similarity=0.339  Sum_probs=53.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..++..|...+ +.+|+++|+++++.+.+.+..                .......++..+++.++|+
T Consensus       179 ~~V~ViGaG~iG~~~a~~L~~~g-~~~V~v~~r~~~ra~~la~~~----------------g~~~~~~~~~~~~l~~aDv  241 (311)
T cd05213         179 KKVLVIGAGEMGELAAKHLAAKG-VAEITIANRTYERAEELAKEL----------------GGNAVPLDELLELLNEADV  241 (311)
T ss_pred             CEEEEECcHHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHHHc----------------CCeEEeHHHHHHHHhcCCE
Confidence            68999999999999999998752 478999999999887766421                0111112345566789999


Q ss_pred             EEEeccCC
Q 011654           82 VFVSVNTP   89 (480)
Q Consensus        82 Vii~Vptp   89 (480)
                      ||.|++.|
T Consensus       242 Vi~at~~~  249 (311)
T cd05213         242 VISATGAP  249 (311)
T ss_pred             EEECCCCC
Confidence            99998865

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK05442 malate dehydrogenase; Provisional

Probab=97.79  E-value=0.00018  Score=72.45  Aligned_cols=123  Identities=15%  Similarity=0.186  Sum_probs=71.4

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCC-----eEEEEeCCHH--HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCH
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKI-----EVAVVDISVS--RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDI   72 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~-----~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~   72 (480)
                      ++||+|||+ |.+|.++|..|+...---     ++.++|++++  +.+...-        ++........ .+.+.+++.
T Consensus         4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~--------Dl~~~~~~~~-~~~~i~~~~   74 (326)
T PRK05442          4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVM--------ELDDCAFPLL-AGVVITDDP   74 (326)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeeh--------hhhhhhhhhc-CCcEEecCh
Confidence            369999998 999999999888651112     7999999643  2221111        1111110001 123444454


Q ss_pred             HHHhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           73 EKHVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        73 ~~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      .+.+++||+||++-..|....   .++    ..+.+.+++..+.|.++.+++.++++-| .|....-.
T Consensus        75 y~~~~daDiVVitaG~~~k~g---~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs-NPvDv~t~  138 (326)
T PRK05442         75 NVAFKDADVALLVGARPRGPG---MERKDLLEANGAIFTAQGKALNEVAARDVKVLVVG-NPANTNAL  138 (326)
T ss_pred             HHHhCCCCEEEEeCCCCCCCC---CcHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeC-CchHHHHH
Confidence            456999999999987664331   111    1123445666677777775556555444 66655433

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=97.79  E-value=0.00024  Score=71.03  Aligned_cols=114  Identities=20%  Similarity=0.284  Sum_probs=69.0

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-c--CHHHHhc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-T--DIEKHVA   77 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~--d~~~a~~   77 (480)
                      |||+|||+ |.+|.++|..|+.+....++.++|++  +.    +|..       -++......-.++.+ .  |+.++++
T Consensus         1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~--~a----~g~a-------lDL~~~~~~~~i~~~~~~~~~y~~~~   67 (310)
T cd01337           1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV--NT----PGVA-------ADLSHINTPAKVTGYLGPEELKKALK   67 (310)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC--cc----ceee-------hHhHhCCCcceEEEecCCCchHHhcC
Confidence            79999999 99999999999877222589999998  21    1210       011110011235532 2  3345599


Q ss_pred             cCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           78 EADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      +||+||++...|..+.   .++    ..+.+.+++..+.|.++.+ +.++++ -|.|..+
T Consensus        68 daDivvitaG~~~k~g---~tR~dll~~N~~i~~~i~~~i~~~~p-~a~viv-vtNPvDv  122 (310)
T cd01337          68 GADVVVIPAGVPRKPG---MTRDDLFNINAGIVRDLATAVAKACP-KALILI-ISNPVNS  122 (310)
T ss_pred             CCCEEEEeCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE-ccCchhh
Confidence            9999999998876441   111    1234455666677777755 444433 3567655

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=97.77  E-value=0.0002  Score=72.07  Aligned_cols=119  Identities=18%  Similarity=0.249  Sum_probs=71.2

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCC-------eEEEEeCCH--HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecC
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKI-------EVAVVDISV--SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTD   71 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d   71 (480)
                      .||+|||+ |.+|.++|..|...  +.       ++.++|+++  ++.+.....        +..... ....+.+.+++
T Consensus         4 ~KV~IIGa~G~VG~~~a~~l~~~--~~~~~~~~~el~L~Di~~~~~~a~g~a~D--------l~~~~~-~~~~~~~i~~~   72 (323)
T TIGR01759         4 VRVAVTGAAGQIGYSLLFRIASG--ELFGKDQPVVLHLLDIPPAMKALEGVAME--------LEDCAF-PLLAGVVATTD   72 (323)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhC--CcccCCCccEEEEEecCCcccccchHHHH--------Hhhccc-cccCCcEEecC
Confidence            59999998 99999999999876  43       899999964  222221110        000000 00012334344


Q ss_pred             HHHHhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           72 IEKHVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      ..+++++||+||++-..|..+.   .++    ..+.+.+++...+|.++.+++.++++- |.|....-
T Consensus        73 ~~~~~~daDvVVitAG~~~k~g---~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivv-sNPvDv~t  136 (323)
T TIGR01759        73 PEEAFKDVDAALLVGAFPRKPG---MERADLLSKNGKIFKEQGKALNKVAKKDVKVLVV-GNPANTNA  136 (323)
T ss_pred             hHHHhCCCCEEEEeCCCCCCCC---CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-CCcHHHHH
Confidence            3455999999999988765431   111    112445667777888887745555443 46765543

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=97.77  E-value=0.00014  Score=71.35  Aligned_cols=108  Identities=16%  Similarity=0.217  Sum_probs=63.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      ||||+|||+|.||..++..+.+. ++.++.+ ++++.. .+...+.            +    ..+...++|+++...+.
T Consensus         1 m~rVgIiG~G~iG~~~~~~l~~~-~~~~l~~v~~~~~~-~~~~~~~------------~----~~~~~~~~d~~~l~~~~   62 (265)
T PRK13303          1 MMKVAMIGFGAIGAAVLELLEHD-PDLRVDWVIVPEHS-IDAVRRA------------L----GEAVRVVSSVDALPQRP   62 (265)
T ss_pred             CcEEEEECCCHHHHHHHHHHhhC-CCceEEEEEEcCCC-HHHHhhh------------h----ccCCeeeCCHHHhccCC
Confidence            79999999999999999999875 4566554 343221 1111110            0    01345678887753568


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC---ccchHHHHHHHHHhc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV---PVKTAEAIEKILTHN  144 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv---~~gt~~~l~~~l~~~  144 (480)
                      |+|++|.|++.                  ..+.....+..|.-|+..|+.   .....+.|.+..++.
T Consensus        63 DvVve~t~~~~------------------~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~  112 (265)
T PRK13303         63 DLVVECAGHAA------------------LKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAG  112 (265)
T ss_pred             CEEEECCCHHH------------------HHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHC
Confidence            99999977431                  122233334455656655543   233344555555554

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=97.76  E-value=0.00023  Score=71.63  Aligned_cols=120  Identities=16%  Similarity=0.194  Sum_probs=70.0

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCC-----eEEEEeCCHHH--HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHH
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKI-----EVAVVDISVSR--IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIE   73 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~-----~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~   73 (480)
                      +||+|||+ |.+|.++|..|+..+..-     ++.++|++++.  .+...-.        +....... ..+.+.+++..
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~D--------l~~~~~~~-~~~~~i~~~~~   73 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAME--------LEDCAFPL-LAEIVITDDPN   73 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehh--------hhhccccc-cCceEEecCcH
Confidence            69999999 999999999998762122     79999995432  2211110        10000000 01234444444


Q ss_pred             HHhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           74 KHVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        74 ~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      +.+++||+||++-..|..+.   .++    ..+.+.+++....|.++.+++.++++- |.|....
T Consensus        74 ~~~~daDivvitaG~~~k~g---~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~  134 (322)
T cd01338          74 VAFKDADWALLVGAKPRGPG---MERADLLKANGKIFTAQGKALNDVASRDVKVLVV-GNPCNTN  134 (322)
T ss_pred             HHhCCCCEEEEeCCCCCCCC---CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe-cCcHHHH
Confidence            55999999999988765431   111    112444666677777777544555443 4666543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=97.75  E-value=0.00035  Score=68.52  Aligned_cols=74  Identities=12%  Similarity=0.190  Sum_probs=48.0

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEE-EeCC-HHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAV-VDIS-VSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~-~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      ||||+|+| +|.||..++..+... +++++.+ +|+. ++....           .+.++.. ....++.+++|+++...
T Consensus         1 ~ikV~IiGa~G~MG~~i~~~i~~~-~~~elvav~d~~~~~~~~~-----------~~~~~~~-~~~~gv~~~~d~~~l~~   67 (266)
T TIGR00036         1 TIKVAVAGAAGRMGRELIKAALAA-EGLQLVAAFERHGSSLQGT-----------DAGELAG-IGKVGVPVTDDLEAVET   67 (266)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCccccCC-----------CHHHhcC-cCcCCceeeCCHHHhcC
Confidence            68999999 699999999999875 5888665 7743 322100           0111100 00113567788887545


Q ss_pred             cCcEEEEecc
Q 011654           78 EADIVFVSVN   87 (480)
Q Consensus        78 ~aDvVii~Vp   87 (480)
                      .+|+|+.|++
T Consensus        68 ~~DvVIdfT~   77 (266)
T TIGR00036        68 DPDVLIDFTT   77 (266)
T ss_pred             CCCEEEECCC
Confidence            6899999975

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.75  E-value=7.2e-05  Score=73.32  Aligned_cols=73  Identities=16%  Similarity=0.266  Sum_probs=56.6

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|||. |.||.|||..|.++  |++|++|...                                 |.++++.+++||
T Consensus       159 k~v~vIG~S~ivG~Pla~lL~~~--gatVtv~~s~---------------------------------t~~l~~~~~~AD  203 (284)
T PRK14179        159 KHAVVIGRSNIVGKPMAQLLLDK--NATVTLTHSR---------------------------------TRNLAEVARKAD  203 (284)
T ss_pred             CEEEEECCCCcCcHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence            47999999 99999999999998  9999998310                                 235677789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv  129 (480)
                      +||.|++.|..              +..      ..+++|++||+.|+.
T Consensus       204 IVI~avg~~~~--------------v~~------~~ik~GavVIDvgin  232 (284)
T PRK14179        204 ILVVAIGRGHF--------------VTK------EFVKEGAVVIDVGMN  232 (284)
T ss_pred             EEEEecCcccc--------------CCH------HHccCCcEEEEecce
Confidence            99999987632              111      227899999986643

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.74  E-value=0.00025  Score=66.06  Aligned_cols=105  Identities=17%  Similarity=0.206  Sum_probs=68.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||++||||.+|..+...+.+.-.++ -|.+||++.+++..+.+..                  +-+.++++++.+++.|
T Consensus         1 l~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~------------------~~~~~s~ide~~~~~D   62 (255)
T COG1712           1 LKVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASV------------------GRRCVSDIDELIAEVD   62 (255)
T ss_pred             CeEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhc------------------CCCccccHHHHhhccc
Confidence            79999999999999998877521123 4889999999988776531                  1123477888789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC---ccchHHHHHHHHH
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV---PVKTAEAIEKILT  142 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv---~~gt~~~l~~~l~  142 (480)
                      +++.|-. +              .++++.   ..+.|+.|.-+++.|+-   +++..+++....+
T Consensus        63 lvVEaAS-~--------------~Av~e~---~~~~L~~g~d~iV~SVGALad~~l~erl~~lak  109 (255)
T COG1712          63 LVVEAAS-P--------------EAVREY---VPKILKAGIDVIVMSVGALADEGLRERLRELAK  109 (255)
T ss_pred             eeeeeCC-H--------------HHHHHH---hHHHHhcCCCEEEEechhccChHHHHHHHHHHh
Confidence            9999943 1              223332   33445555545555653   5555555544333

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.74  E-value=0.00019  Score=70.60  Aligned_cols=112  Identities=13%  Similarity=0.041  Sum_probs=71.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +++.|+|+|.+|.+++..|++.  |++|+++++++++.+.+.+...            .  .+.....+..+....++|+
T Consensus       118 k~vliiGaGg~g~aia~~L~~~--g~~v~v~~R~~~~~~~la~~~~------------~--~~~~~~~~~~~~~~~~~Di  181 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKA--DCNVIIANRTVSKAEELAERFQ------------R--YGEIQAFSMDELPLHRVDL  181 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHh------------h--cCceEEechhhhcccCccE
Confidence            4799999999999999999988  8999999999988877654210            0  0112222211122357999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      ||-|+|.....+       .+-..+      -...++++.+|++.++.|+.|  .+.+..++.
T Consensus       182 vInatp~gm~~~-------~~~~~~------~~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~  229 (270)
T TIGR00507       182 IINATSAGMSGN-------IDEPPV------PAEKLKEGMVVYDMVYNPGET--PFLAEAKSL  229 (270)
T ss_pred             EEECCCCCCCCC-------CCCCCC------CHHHcCCCCEEEEeccCCCCC--HHHHHHHHC
Confidence            999988643210       000000      013367788999999988877  344444443

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=97.74  E-value=9.3e-05  Score=67.05  Aligned_cols=108  Identities=18%  Similarity=0.219  Sum_probs=74.5

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      .+|+++|+.          .....+++.|.++|++|.+||.....-+...+                      .+...++
T Consensus         2 ~~Ig~IGlG----------~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~----------------------~g~~~~~   49 (163)
T PF03446_consen    2 MKIGFIGLG----------NMGSAMARNLAKAGYEVTVYDRSPEKAEALAE----------------------AGAEVAD   49 (163)
T ss_dssp             BEEEEE--S----------HHHHHHHHHHHHTTTEEEEEESSHHHHHHHHH----------------------TTEEEES
T ss_pred             CEEEEEchH----------HHHHHHHHHHHhcCCeEEeeccchhhhhhhHH----------------------hhhhhhh
Confidence            489999984          58999999999999999999976433222221                      3467889


Q ss_pred             CHHHhcccccEEEEEecccc-cccccHHH--HHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011654          405 DAYQAAKDAHGVCILTEWDE-FKTLDYQK--IFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSI  465 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~-~~~~~~~~--~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i  465 (480)
                      |+.++++++|+|++++.+++ .+++ +..  +...+++..+|||+..+-+..      ++++.|+.|.--
T Consensus        50 s~~e~~~~~dvvi~~v~~~~~v~~v-~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vda  118 (163)
T PF03446_consen   50 SPAEAAEQADVVILCVPDDDAVEAV-LFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDA  118 (163)
T ss_dssp             SHHHHHHHBSEEEE-SSSHHHHHHH-HHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEE
T ss_pred             hhhhHhhcccceEeecccchhhhhh-hhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccceeeee
Confidence            99999999999999988844 4431 112  667777778999999887643      344678888654

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=97.70  E-value=0.00054  Score=61.42  Aligned_cols=90  Identities=18%  Similarity=0.178  Sum_probs=57.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRI-AAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v-~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +++.|+|-|.+|..+|..|...  |.+|+++|+||-+. ++...                    +++. .+.++++..+|
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~--Ga~V~V~e~DPi~alqA~~d--------------------Gf~v-~~~~~a~~~ad   80 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGL--GARVTVTEIDPIRALQAAMD--------------------GFEV-MTLEEALRDAD   80 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHT--T-EEEEE-SSHHHHHHHHHT--------------------T-EE-E-HHHHTTT-S
T ss_pred             CEEEEeCCCcccHHHHHHHhhC--CCEEEEEECChHHHHHhhhc--------------------CcEe-cCHHHHHhhCC
Confidence            4789999999999999999988  99999999999643 33333                    3444 35788899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCcc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPV  131 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~  131 (480)
                      ++|.++....-         .+        .+..+.++++.++.+.+..+.
T Consensus        81 i~vtaTG~~~v---------i~--------~e~~~~mkdgail~n~Gh~d~  114 (162)
T PF00670_consen   81 IFVTATGNKDV---------IT--------GEHFRQMKDGAILANAGHFDV  114 (162)
T ss_dssp             EEEE-SSSSSS---------B---------HHHHHHS-TTEEEEESSSSTT
T ss_pred             EEEECCCCccc---------cC--------HHHHHHhcCCeEEeccCcCce
Confidence            99998664210         11        233445888998876555443

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=97.68  E-value=0.00057  Score=70.59  Aligned_cols=89  Identities=15%  Similarity=0.122  Sum_probs=64.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+|+|+|.|.+|..+|..+...  |.+|+++|+++.+.......                   ++.+ .+.+++++.+|+
T Consensus       196 k~VvViG~G~IG~~vA~~ak~~--Ga~ViV~d~dp~r~~~A~~~-------------------G~~v-~~leeal~~aDV  253 (406)
T TIGR00936       196 KTVVVAGYGWCGKGIAMRARGM--GARVIVTEVDPIRALEAAMD-------------------GFRV-MTMEEAAKIGDI  253 (406)
T ss_pred             CEEEEECCCHHHHHHHHHHhhC--cCEEEEEeCChhhHHHHHhc-------------------CCEe-CCHHHHHhcCCE
Confidence            4799999999999999999887  89999999999765433321                   2222 245677889999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHH-HHHhhCCCCCEEEEecCCc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR-MIANVSNSNKIVVEKSTVP  130 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~-~i~~~l~~~~iVi~~STv~  130 (480)
                      ||.+++++                  .+++ .....++++.++++.+-.+
T Consensus       254 VItaTG~~------------------~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       254 FITATGNK------------------DVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             EEECCCCH------------------HHHHHHHHhcCCCCcEEEEECCCC
Confidence            99987642                  2232 3556788999988765443

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=97.62  E-value=0.00035  Score=64.27  Aligned_cols=104  Identities=15%  Similarity=0.200  Sum_probs=74.7

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      ...+.+++|+|+|+.          +-+..+++.|..-|.+|.+|||..........+                      
T Consensus        31 ~~~l~g~tvgIiG~G----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~----------------------   78 (178)
T PF02826_consen   31 GRELRGKTVGIIGYG----------RIGRAVARRLKAFGMRVIGYDRSPKPEEGADEF----------------------   78 (178)
T ss_dssp             BS-STTSEEEEESTS----------HHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHT----------------------
T ss_pred             ccccCCCEEEEEEEc----------CCcCeEeeeeecCCceeEEecccCChhhhcccc----------------------
Confidence            457899999999974          478999999999999999999999876522221                      


Q ss_pred             ceeeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHHh
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKLR  456 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~  456 (480)
                      .+ ...++++.++.+|+|+++.+- ++-+. ++ .+..+.|++.+++|.+-+  ++|.+.+.
T Consensus        79 ~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~-~~~l~~mk~ga~lvN~aRG~~vde~aL~  138 (178)
T PF02826_consen   79 GV-EYVSLDELLAQADIVSLHLPLTPETRGLIN-AEFLAKMKPGAVLVNVARGELVDEDALL  138 (178)
T ss_dssp             TE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBS-HHHHHTSTTTEEEEESSSGGGB-HHHHH
T ss_pred             cc-eeeehhhhcchhhhhhhhhccccccceeee-eeeeeccccceEEEeccchhhhhhhHHH
Confidence            23 345899999999999999885 44444 45 455678998889999865  67765443

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=97.61  E-value=0.00042  Score=72.02  Aligned_cols=88  Identities=13%  Similarity=0.080  Sum_probs=64.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+|+|+|.|.+|..+|..+...  |.+|+++|+++.+.......                   ++.. .+++++++.+|+
T Consensus       213 k~VlViG~G~IG~~vA~~lr~~--Ga~ViV~d~dp~ra~~A~~~-------------------G~~v-~~l~eal~~aDV  270 (425)
T PRK05476        213 KVVVVAGYGDVGKGCAQRLRGL--GARVIVTEVDPICALQAAMD-------------------GFRV-MTMEEAAELGDI  270 (425)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCchhhHHHHhc-------------------CCEe-cCHHHHHhCCCE
Confidence            4799999999999999999987  89999999998775433221                   1222 356777889999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHH-HHHhhCCCCCEEEEecCC
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR-MIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~-~i~~~l~~~~iVi~~STv  129 (480)
                      ||.|++++                  .+++ .....++++.++++.+..
T Consensus       271 VI~aTG~~------------------~vI~~~~~~~mK~GailiNvG~~  301 (425)
T PRK05476        271 FVTATGNK------------------DVITAEHMEAMKDGAILANIGHF  301 (425)
T ss_pred             EEECCCCH------------------HHHHHHHHhcCCCCCEEEEcCCC
Confidence            99997542                  2232 456678899988876544

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.60  E-value=0.00039  Score=70.23  Aligned_cols=100  Identities=12%  Similarity=0.165  Sum_probs=68.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+++|||+|.+|...+..++...+-.+|.+|++++++.+.+.+..           ... ....+...+++++++.++|+
T Consensus       128 ~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~~aDi  195 (325)
T PRK08618        128 KTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEI-----------QSK-FNTEIYVVNSADEAIEEADI  195 (325)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHH-----------HHh-cCCcEEEeCCHHHHHhcCCE
Confidence            479999999999988887764322358999999999988776420           000 01134556888888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      |+.|+|++ +.                .+.   ..+++|+.|+...+..|+.
T Consensus       196 Vi~aT~s~-~p----------------~i~---~~l~~G~hV~~iGs~~p~~  227 (325)
T PRK08618        196 IVTVTNAK-TP----------------VFS---EKLKKGVHINAVGSFMPDM  227 (325)
T ss_pred             EEEccCCC-Cc----------------chH---HhcCCCcEEEecCCCCccc
Confidence            99998754 11                111   3468899887555444544

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=97.60  E-value=0.0003  Score=73.51  Aligned_cols=88  Identities=17%  Similarity=0.094  Sum_probs=63.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+|+|||.|.+|..+|..+...  |.+|+++|+++.+.......                   ++.. .+++++++.+|+
T Consensus       255 KtVgVIG~G~IGr~vA~rL~a~--Ga~ViV~e~dp~~a~~A~~~-------------------G~~~-~~leell~~ADI  312 (476)
T PTZ00075        255 KTVVVCGYGDVGKGCAQALRGF--GARVVVTEIDPICALQAAME-------------------GYQV-VTLEDVVETADI  312 (476)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHhc-------------------Ccee-ccHHHHHhcCCE
Confidence            4799999999999999999987  89999999998765322211                   1222 356778899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecCC
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv  129 (480)
                      |++|+.++.                  ++ ......++++.++++.+-.
T Consensus       313 VI~atGt~~------------------iI~~e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        313 FVTATGNKD------------------IITLEHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             EEECCCccc------------------ccCHHHHhccCCCcEEEEcCCC
Confidence            999975431                  12 2445567899999986543

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.58  E-value=0.00043  Score=69.29  Aligned_cols=99  Identities=18%  Similarity=0.162  Sum_probs=69.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+++|||+|.+|...+..+....+-.+|.+|++++++.+.+.+...            + ....+. .++.++++.++|+
T Consensus       126 ~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~------------~-~~~~~~-~~~~~~av~~aDi  191 (304)
T PRK07340        126 GDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHAR------------A-LGPTAE-PLDGEAIPEAVDL  191 (304)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH------------h-cCCeeE-ECCHHHHhhcCCE
Confidence            4799999999999999999753223579999999999888764210            0 001122 4778888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      |+.|+|++.          |    +   +.   ..+++|+.|...++..|+..
T Consensus       192 VitaT~s~~----------P----l---~~---~~~~~g~hi~~iGs~~p~~~  224 (304)
T PRK07340        192 VVTATTSRT----------P----V---YP---EAARAGRLVVAVGAFTPDMA  224 (304)
T ss_pred             EEEccCCCC----------c----e---eC---ccCCCCCEEEecCCCCCCcc
Confidence            999987642          1    1   11   12578998876666666543

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=97.58  E-value=0.00025  Score=67.74  Aligned_cols=41  Identities=27%  Similarity=0.399  Sum_probs=38.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+|.|||+|.+|.++|..|.+.  ||+|+++|.|+++++...+
T Consensus         1 m~iiIiG~G~vG~~va~~L~~~--g~~Vv~Id~d~~~~~~~~~   41 (225)
T COG0569           1 MKIIIIGAGRVGRSVARELSEE--GHNVVLIDRDEERVEEFLA   41 (225)
T ss_pred             CEEEEECCcHHHHHHHHHHHhC--CCceEEEEcCHHHHHHHhh
Confidence            8999999999999999999998  9999999999999988544

>PRK04148 hypothetical protein; Provisional

Probab=97.57  E-value=0.00048  Score=59.83  Aligned_cols=90  Identities=18%  Similarity=0.190  Sum_probs=62.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +||.+||+| -|..+|..|++.  |++|+++|+|++.++..++.......            +.+ +..+++ ..+++|+
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~~~~v~------------dDl-f~p~~~-~y~~a~l   80 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLGLNAFV------------DDL-FNPNLE-IYKNAKL   80 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhCCeEEE------------CcC-CCCCHH-HHhcCCE
Confidence            579999999 999999999988  99999999999999887754222111            111 233333 3689999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEE
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIV  123 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV  123 (480)
                      |.-+=|.|               .+...+..+++.....-+|
T Consensus        81 iysirpp~---------------el~~~~~~la~~~~~~~~i  107 (134)
T PRK04148         81 IYSIRPPR---------------DLQPFILELAKKINVPLII  107 (134)
T ss_pred             EEEeCCCH---------------HHHHHHHHHHHHcCCCEEE
Confidence            99997753               1345555666665544444

>PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.57  E-value=0.0078  Score=61.02  Aligned_cols=229  Identities=13%  Similarity=0.147  Sum_probs=134.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH----HHHCCCCCCCCCChHHHHHhhcCCCEE---EecCHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIA----AWNGDQLPIYEPGLEDVVTQCRGRNLF---FSTDIE   73 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~----~l~~~~~~~~e~~l~~l~~~~~~~~l~---~t~d~~   73 (480)
                      |.+|-|+|.|.++.-+|..|.+++ ..+|=.+.|...+-+    .++++...+. ..++.-..+...|..+   +..+++
T Consensus         1 m~~VLI~GtGPvAiQLAv~lk~~~-~~~vGi~~R~S~rSq~f~~aL~~~~~~~~-v~vqn~~h~~l~G~~~id~~~~~~~   78 (429)
T PF10100_consen    1 MGNVLIVGTGPVAIQLAVILKKHG-NCRVGIVGRESVRSQRFFEALARSDGLFE-VSVQNEQHQALSGECTIDHVFQDYE   78 (429)
T ss_pred             CCceEEEcCCHHHHHHHHHHHhcc-CceeeeecCcchhHHHHHHHHHhCCCEEE-EeecchhhhhhcCeEEhhHhhcCHH
Confidence            678999999999999999999872 346777887655443    3444211111 1111000111234443   345677


Q ss_pred             HHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhh-CC-CCCEEEEecCCccchHHHHHHHHHhcCCCCcee
Q 011654           74 KHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV-SN-SNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQ  151 (480)
Q Consensus        74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~-~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~  151 (480)
                      +...+=|.+|+|||+.               +..+++++|..- ++ -.++|.+++|.  |....++..+.+.+.  +..
T Consensus        79 ~i~g~WdtlILavtaD---------------AY~~VL~ql~~~~L~~vk~iVLvSPtf--GS~~lv~~~l~~~~~--~~E  139 (429)
T PF10100_consen   79 EIEGEWDTLILAVTAD---------------AYLDVLQQLPWEVLKRVKSIVLVSPTF--GSHLLVKGFLNDLGP--DAE  139 (429)
T ss_pred             HhcccccEEEEEechH---------------HHHHHHHhcCHHHHhhCCEEEEECccc--chHHHHHHHHHhcCC--Cce
Confidence            7667889999999863               235566665432 22 24677766665  333445566665542  222


Q ss_pred             Eee-----CCcccccc----ccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHh-------
Q 011654          152 ILS-----NPEFLAEG----TAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELS-------  215 (480)
Q Consensus       152 v~~-----~Pe~~~~G----~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~-------  215 (480)
                      |++     +-.+...+    +.+..- --.++.+|+...  +...+.+++.+|+.+.- ......++..||.-       
T Consensus       140 VISFStY~gdTr~~d~~~~~~vlt~~-vK~kiYigSt~~--~s~~~~~l~~~~~~~gI-~~~~~~~pl~AE~rNislYVH  215 (429)
T PF10100_consen  140 VISFSTYYGDTRWSDGEQPNRVLTTA-VKKKIYIGSTHS--NSPELDKLCRLLAQLGI-QLEVMDNPLEAESRNISLYVH  215 (429)
T ss_pred             EEEeecccccceeccCCCcceehhhh-hhceEEEEeCCC--CChHHHHHHHHHHHcCC-eEEEeCChHhhhhcccceecC
Confidence            221     22222111    111111 123688897633  45578899999999852 22344567777742       


Q ss_pred             ------hhHHh-----------------------HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          216 ------KLAAN-----------------------AFLAQRISSVNAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       216 ------Kl~~N-----------------------~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                            ++.-|                       ....-...++.|++.+..++|++.-.+++.++-|
T Consensus       216 pplfmndfsL~aIF~~~~~~kYvYKL~PEGPIT~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~dd  283 (429)
T PF10100_consen  216 PPLFMNDFSLNAIFEEDGVPKYVYKLFPEGPITPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDD  283 (429)
T ss_pred             ChHhhChhhHHHHhCCCCCcceEEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccC
Confidence                  11111                       2344457789999999999999999999999875

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=97.55  E-value=0.00062  Score=70.54  Aligned_cols=87  Identities=15%  Similarity=0.090  Sum_probs=64.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+|+|+|+|.+|..+|..+...  |.+|+++|+++.+.+.....                   ++.. .+.++++..+|+
T Consensus       203 ktVvViG~G~IG~~va~~ak~~--Ga~ViV~d~d~~R~~~A~~~-------------------G~~~-~~~~e~v~~aDV  260 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQ--GARVIVTEVDPICALQAAME-------------------GYEV-MTMEEAVKEGDI  260 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECChhhHHHHHhc-------------------CCEE-ccHHHHHcCCCE
Confidence            3799999999999999999887  88999999999887665532                   1222 234567789999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecC
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKST  128 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~ST  128 (480)
                      ||.|++++                  .++ ......++++.++++.+.
T Consensus       261 VI~atG~~------------------~~i~~~~l~~mk~GgilvnvG~  290 (413)
T cd00401         261 FVTTTGNK------------------DIITGEHFEQMKDGAIVCNIGH  290 (413)
T ss_pred             EEECCCCH------------------HHHHHHHHhcCCCCcEEEEeCC
Confidence            99997642                  122 234567888888877653

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=97.54  E-value=0.00029  Score=60.46  Aligned_cols=98  Identities=22%  Similarity=0.334  Sum_probs=57.9

Q ss_pred             EEEEEc-CChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHHhccC
Q 011654            3 KICCIG-AGYVGGPTMAVIALKCPKIEVAVV-DISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKHVAEA   79 (480)
Q Consensus         3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a~~~a   79 (480)
                      ||+||| .|.+|..++..|... +++++..+ +++.++-+.+......+     ....      -..+. .+.+  ..++
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~-~~~~l~av~~~~~~~~~~~~~~~~~~-----~~~~------~~~~~~~~~~--~~~~   66 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEH-PDFEVVALAASARSAGKRVSEAGPHL-----KGEV------VLELEPEDFE--ELAV   66 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcC-CCceEEEEEechhhcCcCHHHHCccc-----cccc------ccccccCChh--hcCC
Confidence            689999 599999999988874 47888776 65543322222110000     0000      00111 2222  2589


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv  129 (480)
                      |+||+|+|...               ..+.+..+.+.+.+|++||++|+.
T Consensus        67 DvV~~~~~~~~---------------~~~~~~~~~~~~~~g~~viD~s~~  101 (122)
T smart00859       67 DIVFLALPHGV---------------SKEIAPLLPKAAEAGVKVIDLSSA  101 (122)
T ss_pred             CEEEEcCCcHH---------------HHHHHHHHHhhhcCCCEEEECCcc
Confidence            99999998532               233344455566889999988754

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.54  E-value=0.00092  Score=66.85  Aligned_cols=67  Identities=18%  Similarity=0.383  Sum_probs=48.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCH-HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISV-SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~-~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      +||+|||+|.||..++..+..+ ++.++++ +|+++ +++.   .+ .                 +...+.+..+.+.++
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~-pd~ELVgV~dr~~~~~~~---~~-~-----------------~v~~~~d~~e~l~~i   61 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQ-PDMELVGVFSRRGAETLD---TE-T-----------------PVYAVADDEKHLDDV   61 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhC-CCcEEEEEEcCCcHHHHh---hc-C-----------------CccccCCHHHhccCC
Confidence            6899999999999999888865 6889886 69985 4332   11 1                 112234555666789


Q ss_pred             cEEEEeccCCC
Q 011654           80 DIVFVSVNTPT   90 (480)
Q Consensus        80 DvVii~Vptp~   90 (480)
                      |+|++|+|+..
T Consensus        62 DVViIctPs~t   72 (324)
T TIGR01921        62 DVLILCMGSAT   72 (324)
T ss_pred             CEEEEcCCCcc
Confidence            99999988643

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>PTZ00325 malate dehydrogenase; Provisional

Probab=97.53  E-value=0.00077  Score=67.73  Aligned_cols=118  Identities=20%  Similarity=0.238  Sum_probs=66.0

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCH---HHHh
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDI---EKHV   76 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~---~~a~   76 (480)
                      |+||+|||+ |.+|..+|..|+......++.++|++...-+.     ..        +......-.+..++|.   .+++
T Consensus         8 ~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a-----~D--------l~~~~~~~~v~~~td~~~~~~~l   74 (321)
T PTZ00325          8 MFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVA-----AD--------LSHIDTPAKVTGYADGELWEKAL   74 (321)
T ss_pred             CCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccc-----cc--------hhhcCcCceEEEecCCCchHHHh
Confidence            579999999 99999999999865225689999993211100     00        0000001123433331   4569


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      ++||+||++...|....   .++    ..+.+.++++++.+.++- +..+| +.+|.|....-.
T Consensus        75 ~gaDvVVitaG~~~~~~---~tR~dll~~N~~i~~~i~~~i~~~~-~~~iv-iv~SNPvdv~~~  133 (321)
T PTZ00325         75 RGADLVLICAGVPRKPG---MTRDDLFNTNAPIVRDLVAAVASSA-PKAIV-GIVSNPVNSTVP  133 (321)
T ss_pred             CCCCEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHC-CCeEE-EEecCcHHHHHH
Confidence            99999999998765431   000    011122334444454443 33444 446777765433

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=97.52  E-value=0.00032  Score=70.56  Aligned_cols=101  Identities=19%  Similarity=0.244  Sum_probs=77.5

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.-          -...+++.|..-|.+|.+|||+...+...                       ....
T Consensus       139 el~gkTvGIiG~G~----------IG~~va~~l~afgm~v~~~d~~~~~~~~~-----------------------~~~~  185 (324)
T COG0111         139 ELAGKTVGIIGLGR----------IGRAVAKRLKAFGMKVIGYDPYSPRERAG-----------------------VDGV  185 (324)
T ss_pred             cccCCEEEEECCCH----------HHHHHHHHHHhCCCeEEEECCCCchhhhc-----------------------cccc
Confidence            56799999999853          67899999999999999999988764211                       1223


Q ss_pred             eeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      ...+++++.++.||+|+++++- ++-+. ++.+. ...|++++++|.+.+  ++|.+.+
T Consensus       186 ~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~-~a~MK~gailIN~aRG~vVde~aL  243 (324)
T COG0111         186 VGVDSLDELLAEADILTLHLPLTPETRGLINAEE-LAKMKPGAILINAARGGVVDEDAL  243 (324)
T ss_pred             eecccHHHHHhhCCEEEEcCCCCcchhcccCHHH-HhhCCCCeEEEECCCcceecHHHH
Confidence            4457899999999999999987 55555 45555 578998889999855  6665543

>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent

Probab=97.52  E-value=0.0017  Score=66.78  Aligned_cols=121  Identities=16%  Similarity=0.180  Sum_probs=71.9

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcC-CCC----eEEEE--eCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHH
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKC-PKI----EVAVV--DISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIE   73 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~-~G~----~V~~~--D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~   73 (480)
                      .||+|||+ |.+|..+|..|+... .+.    .+.++  |+++++.+...-.        +.+...... .+++++++..
T Consensus        45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~a~D--------L~d~a~~~~-~~v~i~~~~y  115 (387)
T TIGR01757        45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGVAME--------LEDSLYPLL-REVSIGIDPY  115 (387)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHHHHH--------HHHhhhhhc-CceEEecCCH
Confidence            48999999 999999999998762 121    24444  8888876654421        111110011 2355444444


Q ss_pred             HHhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           74 KHVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        74 ~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      +.+++||+||++-..|..+.   .++    ..+.+.+++....|.++.+++.+|++- |.|..+.-
T Consensus       116 ~~~kdaDIVVitAG~prkpg---~tR~dll~~N~~I~k~i~~~I~~~a~~~~iviVV-sNPvDv~t  177 (387)
T TIGR01757       116 EVFEDADWALLIGAKPRGPG---MERADLLDINGQIFADQGKALNAVASKNCKVLVV-GNPCNTNA  177 (387)
T ss_pred             HHhCCCCEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEc-CCcHHHHH
Confidence            55999999999988765431   111    112444566667777776566655543 46665543

This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=97.52  E-value=0.0011  Score=69.30  Aligned_cols=122  Identities=14%  Similarity=0.165  Sum_probs=73.4

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHc-------CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHH
Q 011654            2 VKICCIGA-GYVGGPTMAVIALK-------CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIE   73 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~-------~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~   73 (480)
                      .||+|||+ |.+|..+|..|+..       .-..+++++|+++++.+...-.        +.+...... .++.++++..
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amD--------L~daa~~~~-~~v~i~~~~y  171 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAME--------LEDSLYPLL-REVSIGIDPY  171 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHH--------HHHhhhhhc-CceEEecCCH
Confidence            48999999 99999999999864       1123799999999877654421        111110011 2355444444


Q ss_pred             HHhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           74 KHVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        74 ~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      +.+++||+||++-..|....   .++    ..+.+.+++..+.|.++..++.+||+- |.|..+.-.
T Consensus       172 e~~kdaDiVVitAG~prkpG---~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVV-sNPvDv~t~  234 (444)
T PLN00112        172 EVFQDAEWALLIGAKPRGPG---MERADLLDINGQIFAEQGKALNEVASRNVKVIVV-GNPCNTNAL  234 (444)
T ss_pred             HHhCcCCEEEECCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEc-CCcHHHHHH
Confidence            55999999999988765431   111    112344566666677744445555443 466655433

>TIGR00518 alaDH alanine dehydrogenase

Probab=97.52  E-value=0.00058  Score=70.20  Aligned_cols=104  Identities=19%  Similarity=0.259  Sum_probs=67.2

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +|.|||+|.+|...+..+...  |.+|+++|+++++.+.+.+.. ..+..             ...-..++.+.+.++|+
T Consensus       169 ~VlViGaG~vG~~aa~~a~~l--Ga~V~v~d~~~~~~~~l~~~~g~~v~~-------------~~~~~~~l~~~l~~aDv  233 (370)
T TIGR00518       169 DVTIIGGGVVGTNAAKMANGL--GATVTILDINIDRLRQLDAEFGGRIHT-------------RYSNAYEIEDAVKRADL  233 (370)
T ss_pred             eEEEEcCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcCceeEe-------------ccCCHHHHHHHHccCCE
Confidence            699999999999999999987  889999999999887765321 00000             00001234566789999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      ||.|++.|...       .+-+     +.++....++++.+|++-+.-+.|.
T Consensus       234 VI~a~~~~g~~-------~p~l-----it~~~l~~mk~g~vIvDva~d~GG~  273 (370)
T TIGR00518       234 LIGAVLIPGAK-------APKL-----VSNSLVAQMKPGAVIVDVAIDQGGC  273 (370)
T ss_pred             EEEccccCCCC-------CCcC-----cCHHHHhcCCCCCEEEEEecCCCCC
Confidence            99998543211       1110     1123334568888888876544444

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>PRK11579 putative oxidoreductase; Provisional

Probab=97.50  E-value=0.0013  Score=67.09  Aligned_cols=68  Identities=21%  Similarity=0.378  Sum_probs=48.5

Q ss_pred             cEEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654            2 VKICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--   77 (480)
                      +||+|||+|.+|.. .+..+... ++.+++ ++|+++++...   ..                 +...+.+|+++.++  
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~-~~~~l~av~d~~~~~~~~---~~-----------------~~~~~~~~~~ell~~~   63 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGT-PGLELAAVSSSDATKVKA---DW-----------------PTVTVVSEPQHLFNDP   63 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhC-CCCEEEEEECCCHHHHHh---hC-----------------CCCceeCCHHHHhcCC
Confidence            58999999999984 55656553 578876 58999876531   10                 12345678888775  


Q ss_pred             cCcEEEEeccCCC
Q 011654           78 EADIVFVSVNTPT   90 (480)
Q Consensus        78 ~aDvVii~Vptp~   90 (480)
                      +.|+|+||+|+..
T Consensus        64 ~vD~V~I~tp~~~   76 (346)
T PRK11579         64 NIDLIVIPTPNDT   76 (346)
T ss_pred             CCCEEEEcCCcHH
Confidence            5799999988754

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=97.49  E-value=0.00069  Score=68.86  Aligned_cols=86  Identities=20%  Similarity=0.248  Sum_probs=56.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCC-CCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGD-QLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      |+||+|+|+|.||..++..+..+ +++++++ .|.+++..+.+.+. ..+.+.+ ..+.........+.+..++++.+.+
T Consensus         1 ~ikVaI~G~GrIGr~va~al~~~-~d~eLvav~d~~~~~~~~la~~~G~~~~~~-~~~~~~~~~~~~i~V~~~~~el~~~   78 (341)
T PRK04207          1 MIKVGVNGYGTIGKRVADAVAAQ-PDMELVGVAKTKPDYEARVAVEKGYPLYVA-DPEREKAFEEAGIPVAGTIEDLLEK   78 (341)
T ss_pred             CeEEEEECCCHHHHHHHHHHhcC-CCcEEEEEECCChHHHHHHHHhcCCCcccc-CccccccccCCceEEcCChhHhhcc
Confidence            68999999999999999988865 6788776 57677666655431 1222111 0000000012346777778777788


Q ss_pred             CcEEEEeccC
Q 011654           79 ADIVFVSVNT   88 (480)
Q Consensus        79 aDvVii~Vpt   88 (480)
                      +|+||.|+|.
T Consensus        79 vDVVIdaT~~   88 (341)
T PRK04207         79 ADIVVDATPG   88 (341)
T ss_pred             CCEEEECCCc
Confidence            9999999764

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=97.49  E-value=0.00032  Score=61.47  Aligned_cols=72  Identities=25%  Similarity=0.309  Sum_probs=54.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCC--EEEecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIE-VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRN--LFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~--l~~t~d~~~a~~~   78 (480)
                      .++.|||+|-+|.+++..|+..  |.+ |++++|+.++.+.+.+..               ....  ....++..+.+.+
T Consensus        13 ~~vlviGaGg~ar~v~~~L~~~--g~~~i~i~nRt~~ra~~l~~~~---------------~~~~~~~~~~~~~~~~~~~   75 (135)
T PF01488_consen   13 KRVLVIGAGGAARAVAAALAAL--GAKEITIVNRTPERAEALAEEF---------------GGVNIEAIPLEDLEEALQE   75 (135)
T ss_dssp             SEEEEESSSHHHHHHHHHHHHT--TSSEEEEEESSHHHHHHHHHHH---------------TGCSEEEEEGGGHCHHHHT
T ss_pred             CEEEEECCHHHHHHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHc---------------CccccceeeHHHHHHHHhh
Confidence            4799999999999999999998  665 999999999998887521               0011  2334556666889


Q ss_pred             CcEEEEeccCCC
Q 011654           79 ADIVFVSVNTPT   90 (480)
Q Consensus        79 aDvVii~Vptp~   90 (480)
                      +|+||.|+|.+.
T Consensus        76 ~DivI~aT~~~~   87 (135)
T PF01488_consen   76 ADIVINATPSGM   87 (135)
T ss_dssp             ESEEEE-SSTTS
T ss_pred             CCeEEEecCCCC
Confidence            999999988653

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PLN02494 adenosylhomocysteinase

Probab=97.49  E-value=0.00058  Score=71.28  Aligned_cols=87  Identities=21%  Similarity=0.130  Sum_probs=63.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH-HHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIA-AWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~-~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|+|.|.+|..+|..+...  |.+|+++|+++.+.. ....|                    +.+ .+.+++++.+|
T Consensus       255 KtVvViGyG~IGr~vA~~aka~--Ga~VIV~e~dp~r~~eA~~~G--------------------~~v-v~leEal~~AD  311 (477)
T PLN02494        255 KVAVICGYGDVGKGCAAAMKAA--GARVIVTEIDPICALQALMEG--------------------YQV-LTLEDVVSEAD  311 (477)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchhhHHHHhcC--------------------Cee-ccHHHHHhhCC
Confidence            4799999999999999999876  899999999987643 32322                    222 24667788999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      +||.|.++..                 -+.......++++.++++.+-
T Consensus       312 VVI~tTGt~~-----------------vI~~e~L~~MK~GAiLiNvGr  342 (477)
T PLN02494        312 IFVTTTGNKD-----------------IIMVDHMRKMKNNAIVCNIGH  342 (477)
T ss_pred             EEEECCCCcc-----------------chHHHHHhcCCCCCEEEEcCC
Confidence            9998765421                 012445567899999988765

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=97.49  E-value=0.00057  Score=69.19  Aligned_cols=93  Identities=24%  Similarity=0.277  Sum_probs=62.1

Q ss_pred             CcEEEEEcCChhH-HHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            1 MVKICCIGAGYVG-GPTMAVIALKCPK--IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         1 imkI~VIGlG~~G-~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      ++||+|||+|.++ ...+..+... ++  .-|-++|+++++.+.+.+..                 +.-...+|+++.++
T Consensus         3 ~irvgiiG~G~~~~~~~~~~~~~~-~~~~~~vav~d~~~~~a~~~a~~~-----------------~~~~~~~~~~~ll~   64 (342)
T COG0673           3 MIRVGIIGAGGIAGKAHLPALAAL-GGGLELVAVVDRDPERAEAFAEEF-----------------GIAKAYTDLEELLA   64 (342)
T ss_pred             eeEEEEEcccHHHHHHhHHHHHhC-CCceEEEEEecCCHHHHHHHHHHc-----------------CCCcccCCHHHHhc
Confidence            4799999999554 5677777775 12  23566799999988777531                 11146678888776


Q ss_pred             c--CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654           78 E--ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        78 ~--aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv  129 (480)
                      +  .|+|+||+|+..+.              .-    +...+..|+-|+++--+
T Consensus        65 ~~~iD~V~Iatp~~~H~--------------e~----~~~AL~aGkhVl~EKPl  100 (342)
T COG0673          65 DPDIDAVYIATPNALHA--------------EL----ALAALEAGKHVLCEKPL  100 (342)
T ss_pred             CCCCCEEEEcCCChhhH--------------HH----HHHHHhcCCEEEEcCCC
Confidence            4  69999999876542              11    23345567778777543

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=97.49  E-value=0.00024  Score=73.24  Aligned_cols=89  Identities=11%  Similarity=0.113  Sum_probs=65.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE------EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA------VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~------~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a   75 (480)
                      ++|+|||+|.+|...|..|...  |++|+      ++|.+.+..+...+.                   ++.+ .+++++
T Consensus        37 KtIaIIGyGSqG~AqAlNLrdS--GvnVvvglr~~~id~~~~s~~kA~~d-------------------GF~v-~~~~Ea   94 (487)
T PRK05225         37 KKIVIVGCGAQGLNQGLNMRDS--GLDISYALRKEAIAEKRASWRKATEN-------------------GFKV-GTYEEL   94 (487)
T ss_pred             CEEEEEccCHHHHHHhCCCccc--cceeEEeccccccccccchHHHHHhc-------------------CCcc-CCHHHH
Confidence            5899999999999999999887  89988      455444433333221                   2333 467888


Q ss_pred             hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      ++.||+|++.+|...               -..+.+++.++++++.++..+-
T Consensus        95 ~~~ADvVviLlPDt~---------------q~~v~~~i~p~LK~Ga~L~fsH  131 (487)
T PRK05225         95 IPQADLVINLTPDKQ---------------HSDVVRAVQPLMKQGAALGYSH  131 (487)
T ss_pred             HHhCCEEEEcCChHH---------------HHHHHHHHHhhCCCCCEEEecC
Confidence            999999999987431               1345588999999999887643

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.47  E-value=0.0012  Score=65.96  Aligned_cols=101  Identities=13%  Similarity=0.092  Sum_probs=71.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+++|||+|..|...+..++.-.+=.+|.+|++++++.+++.+.           +-.. ....+...+++++++.+||+
T Consensus       118 ~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~-----------~~~~-~~~~v~~~~~~~eav~~aDI  185 (301)
T PRK06407        118 ENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAER-----------FSKE-FGVDIRPVDNAEAALRDADT  185 (301)
T ss_pred             cEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHH-----------HHHh-cCCcEEEeCCHHHHHhcCCE
Confidence            47999999999999999888754446899999999998887642           0000 01246778899999999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      |+.|+++..          |    +..     ...+++|+.|....+..|+.
T Consensus       186 V~taT~s~~----------P----~~~-----~~~l~pg~hV~aiGs~~p~~  218 (301)
T PRK06407        186 ITSITNSDT----------P----IFN-----RKYLGDEYHVNLAGSNYPNR  218 (301)
T ss_pred             EEEecCCCC----------c----Eec-----HHHcCCCceEEecCCCCCCc
Confidence            999977531          1    111     13567888776555555544

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=97.46  E-value=0.001  Score=66.62  Aligned_cols=113  Identities=19%  Similarity=0.282  Sum_probs=68.3

Q ss_pred             EEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-ec--CHHHHhcc
Q 011654            3 KICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-ST--DIEKHVAE   78 (480)
Q Consensus         3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t~--d~~~a~~~   78 (480)
                      ||+|||+ |.+|.++|..|+.+.-..++.++|+++.      .|..       -++......-+++. +.  ++.+++++
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a------~g~a-------~DL~~~~~~~~i~~~~~~~~~~~~~~d   67 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGA------AGVA-------ADLSHIPTAASVKGFSGEEGLENALKG   67 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCC------cEEE-------chhhcCCcCceEEEecCCCchHHHcCC
Confidence            7999999 9999999999988732348999999861      1210       00100000113443 22  23456999


Q ss_pred             CcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      ||+||++...|..+.   .++    ..+.+.+++..+.|.++.+ +.++++ -|.|..+
T Consensus        68 aDivvitaG~~~~~g---~~R~dll~~N~~I~~~i~~~i~~~~p-~~iiiv-vsNPvDv  121 (312)
T TIGR01772        68 ADVVVIPAGVPRKPG---MTRDDLFNVNAGIVKDLVAAVAESCP-KAMILV-ITNPVNS  121 (312)
T ss_pred             CCEEEEeCCCCCCCC---ccHHHHHHHhHHHHHHHHHHHHHhCC-CeEEEE-ecCchhh
Confidence            999999998765431   111    2234456666677777754 444433 3567665

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=97.45  E-value=0.00092  Score=76.39  Aligned_cols=76  Identities=18%  Similarity=0.207  Sum_probs=55.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCe-------------EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIE-------------VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF   67 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~-------------V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~   67 (480)
                      +.||+|||+|.||.+.|..|++. ++.+             |++.|++++..+.+.++..     +.         ..+.
T Consensus       569 ~~rIlVLGAG~VG~~~a~~La~~-~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~-----~~---------~~v~  633 (1042)
T PLN02819        569 SQNVLILGAGRVCRPAAEYLASV-KTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIE-----NA---------EAVQ  633 (1042)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhC-cCccccccccccccccEEEEECCCHHHHHHHHHhcC-----CC---------ceEE
Confidence            35899999999999999999875 3545             9999999998888776421     10         0122


Q ss_pred             E-ecCHHHH---hccCcEEEEeccCCCC
Q 011654           68 F-STDIEKH---VAEADIVFVSVNTPTK   91 (480)
Q Consensus        68 ~-t~d~~~a---~~~aDvVii~Vptp~~   91 (480)
                      . .+|.++.   ++++|+|++|+|+..+
T Consensus       634 lDv~D~e~L~~~v~~~DaVIsalP~~~H  661 (1042)
T PLN02819        634 LDVSDSESLLKYVSQVDVVISLLPASCH  661 (1042)
T ss_pred             eecCCHHHHHHhhcCCCEEEECCCchhh
Confidence            2 3455443   3679999999997654

>PRK05086 malate dehydrogenase; Provisional

Probab=97.44  E-value=0.0012  Score=66.25  Aligned_cols=115  Identities=17%  Similarity=0.194  Sum_probs=67.1

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHH-cCCCCeEEEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEE--ecCHHHHh
Q 011654            2 VKICCIGA-GYVGGPTMAVIAL-KCPKIEVAVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFF--STDIEKHV   76 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~-~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~--t~d~~~a~   76 (480)
                      |||+|||+ |.+|..+|..|.. ..-+++++++|+++..     .+. ..+.+..        ..-.++.  .+++.+++
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~-----~g~alDl~~~~--------~~~~i~~~~~~d~~~~l   67 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVT-----PGVAVDLSHIP--------TAVKIKGFSGEDPTPAL   67 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCC-----cceehhhhcCC--------CCceEEEeCCCCHHHHc
Confidence            89999999 9999999988854 2225789999997542     110 0110000        0012222  35655668


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      +++|+||+|...+....   .+ +.|     .+.+++.++.+.++. ++.+|+ ..|.|..+.-
T Consensus        68 ~~~DiVIitaG~~~~~~---~~-R~dll~~N~~i~~~ii~~i~~~~-~~~ivi-vvsNP~D~~t  125 (312)
T PRK05086         68 EGADVVLISAGVARKPG---MD-RSDLFNVNAGIVKNLVEKVAKTC-PKACIG-IITNPVNTTV  125 (312)
T ss_pred             CCCCEEEEcCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHhC-CCeEEE-EccCchHHHH
Confidence            99999999998865431   00 111     123444555555553 344444 4677876543

>cd00704 MDH Malate dehydrogenase

Probab=97.44  E-value=0.00058  Score=68.83  Aligned_cols=120  Identities=17%  Similarity=0.224  Sum_probs=70.0

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCC-----CCeEEEEeCCH--HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHH
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCP-----KIEVAVVDISV--SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIE   73 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~-----G~~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~   73 (480)
                      .||+|||+ |.+|..+|..|+..+-     .+++.++|+++  ++.+....        ++.+..... ....+.+++..
T Consensus         1 ~KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~--------Dl~d~~~~~-~~~~~i~~~~~   71 (323)
T cd00704           1 LHVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVM--------ELQDCAFPL-LKGVVITTDPE   71 (323)
T ss_pred             CEEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeee--------ehhhhcccc-cCCcEEecChH
Confidence            38999999 9999999999987511     12599999987  43222111        111111000 01234444555


Q ss_pred             HHhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           74 KHVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        74 ~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      +++++||+||++-..|..+.   .++    ..+.+.+++....|.++..++.+++.- |.|....
T Consensus        72 ~~~~~aDiVVitAG~~~~~g---~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivv-sNPvD~~  132 (323)
T cd00704          72 EAFKDVDVAILVGAFPRKPG---MERADLLRKNAKIFKEQGEALNKVAKPTVKVLVV-GNPANTN  132 (323)
T ss_pred             HHhCCCCEEEEeCCCCCCcC---CcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe-CCcHHHH
Confidence            67999999999988765431   111    113344566667777776444544443 4565543

Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.43  E-value=0.0014  Score=65.78  Aligned_cols=122  Identities=16%  Similarity=0.131  Sum_probs=84.6

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEE
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIV   82 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvV   82 (480)
                      .++|||+|..+......+..-.+.-+|.+|+++++..+++.+.           +-.. ....+..+++.++++++||+|
T Consensus       132 ~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~-----------l~~~-~~~~v~a~~s~~~av~~aDiI  199 (330)
T COG2423         132 TLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAAR-----------LRKR-GGEAVGAADSAEEAVEGADIV  199 (330)
T ss_pred             EEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHH-----------HHhh-cCccceeccCHHHHhhcCCEE
Confidence            5899999999999999998866667899999999998887742           0000 001256788999999999999


Q ss_pred             EEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           83 FVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      +.|+|+..          |-+         -...+++|+.|...++-.|+-.+.-.+++...    +-.++..++..
T Consensus       200 vt~T~s~~----------Pil---------~~~~l~~G~hI~aiGad~p~k~Eld~e~l~ra----~~vvvD~~~q~  253 (330)
T COG2423         200 VTATPSTE----------PVL---------KAEWLKPGTHINAIGADAPGKRELDPEVLARA----DRVVVDSLEQT  253 (330)
T ss_pred             EEecCCCC----------Cee---------cHhhcCCCcEEEecCCCCcccccCCHHHHHhc----CeEEEcCHHHh
Confidence            99987642          221         13457799988876666666543323344432    23456666554

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.42  E-value=0.00018  Score=61.71  Aligned_cols=95  Identities=22%  Similarity=0.295  Sum_probs=55.1

Q ss_pred             EEEEEc-CChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec-CHHHHhccC
Q 011654            3 KICCIG-AGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST-DIEKHVAEA   79 (480)
Q Consensus         3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~-d~~~a~~~a   79 (480)
                      ||+||| .|++|..+...|+++ |.+++.. +.+..+.-..+.......  .+         ...+.+.+ +.+ .+.++
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~h-p~~e~~~~~~~~~~~g~~~~~~~~~~--~~---------~~~~~~~~~~~~-~~~~~   67 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEH-PDFELVALVSSSRSAGKPLSEVFPHP--KG---------FEDLSVEDADPE-ELSDV   67 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT-STEEEEEEEESTTTTTSBHHHTTGGG--TT---------TEEEBEEETSGH-HHTTE
T ss_pred             CEEEECCCCHHHHHHHHHHhcC-CCccEEEeeeeccccCCeeehhcccc--cc---------ccceeEeecchh-HhhcC
Confidence            799999 999999999999986 6777554 555442222222110000  00         01233444 444 47999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      |+||.|+|+.               ...+....   .+..|..||+.|+
T Consensus        68 Dvvf~a~~~~---------------~~~~~~~~---~~~~g~~ViD~s~   98 (121)
T PF01118_consen   68 DVVFLALPHG---------------ASKELAPK---LLKAGIKVIDLSG   98 (121)
T ss_dssp             SEEEE-SCHH---------------HHHHHHHH---HHHTTSEEEESSS
T ss_pred             CEEEecCchh---------------HHHHHHHH---HhhCCcEEEeCCH
Confidence            9999998741               11222222   2456788888764

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=97.41  E-value=0.00091  Score=69.92  Aligned_cols=70  Identities=27%  Similarity=0.312  Sum_probs=53.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|||+|.||..++..|...  | .+|++++++.++.+.+.+..                ........+..+++.++|
T Consensus       181 ~~VlViGaG~iG~~~a~~L~~~--G~~~V~v~~rs~~ra~~la~~~----------------g~~~i~~~~l~~~l~~aD  242 (417)
T TIGR01035       181 KKALLIGAGEMGELVAKHLLRK--GVGKILIANRTYERAEDLAKEL----------------GGEAVKFEDLEEYLAEAD  242 (417)
T ss_pred             CEEEEECChHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHc----------------CCeEeeHHHHHHHHhhCC
Confidence            4799999999999999999987  7 78999999998877665320                001111235556688999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||.|++.|
T Consensus       243 vVi~aT~s~  251 (417)
T TIGR01035       243 IVISSTGAP  251 (417)
T ss_pred             EEEECCCCC
Confidence            999998765

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=97.38  E-value=0.0035  Score=62.77  Aligned_cols=106  Identities=13%  Similarity=0.121  Sum_probs=70.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEe-CCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVD-ISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D-~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|+|+|.+|..+|.+|..-  | .++.|. +++...+...+-                   ... ..|.++.+.++|
T Consensus       163 K~vgilG~G~IG~~ia~rL~~F--g-~~i~y~~r~~~~~~~~~~~-------------------~~~-~~d~~~~~~~sD  219 (336)
T KOG0069|consen  163 KTVGILGLGRIGKAIAKRLKPF--G-CVILYHSRTQLPPEEAYEY-------------------YAE-FVDIEELLANSD  219 (336)
T ss_pred             CEEEEecCcHHHHHHHHhhhhc--c-ceeeeecccCCchhhHHHh-------------------ccc-ccCHHHHHhhCC
Confidence            4799999999999999999985  7 555554 433322222110                   001 235667789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      +|++|.|..           +++   ...+ +++...++++.++|+.+--.....+.+.+.|++.
T Consensus       220 ~ivv~~pLt-----------~~T---~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG  270 (336)
T KOG0069|consen  220 VIVVNCPLT-----------KET---RHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSG  270 (336)
T ss_pred             EEEEecCCC-----------HHH---HHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcC
Confidence            999998742           222   2333 5678889999999976544444556677777664

>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase

Probab=97.38  E-value=0.0023  Score=66.73  Aligned_cols=80  Identities=21%  Similarity=0.338  Sum_probs=54.5

Q ss_pred             cEEEEEcCChhHHHH-HHHHHHc---CCCCeEEEEeCC-HHHHHHHHCCCCCCCCCChHHHHHhhc-CCCEEEecCHHHH
Q 011654            2 VKICCIGAGYVGGPT-MAVIALK---CPKIEVAVVDIS-VSRIAAWNGDQLPIYEPGLEDVVTQCR-GRNLFFSTDIEKH   75 (480)
Q Consensus         2 mkI~VIGlG~~G~~l-A~~La~~---~~G~~V~~~D~~-~~~v~~l~~~~~~~~e~~l~~l~~~~~-~~~l~~t~d~~~a   75 (480)
                      |||+|||.|..-++- ...|+..   .++-+++++|+| +++++.+..-        ...+..... .-.+..|+|.++|
T Consensus         1 ~KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~~rl~~v~~~--------~~~~~~~~~~~~~v~~t~d~~~a   72 (419)
T cd05296           1 MKLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDEEEKLEIVGAL--------AKRMVKKAGLPIKVHLTTDRREA   72 (419)
T ss_pred             CEEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCChHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHH
Confidence            799999999975533 3344442   345789999999 8887654320        111222111 2357889999999


Q ss_pred             hccCcEEEEeccCC
Q 011654           76 VAEADIVFVSVNTP   89 (480)
Q Consensus        76 ~~~aDvVii~Vptp   89 (480)
                      +.+||+||++.-.+
T Consensus        73 l~gadfVi~~~~vg   86 (419)
T cd05296          73 LEGADFVFTQIRVG   86 (419)
T ss_pred             hCCCCEEEEEEeeC
Confidence            99999999998643

Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.37  E-value=0.0016  Score=65.32  Aligned_cols=100  Identities=9%  Similarity=0.036  Sum_probs=71.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+++|||+|..+...+..+....+-.+|.+|++++++.+++.+..            ++ ..-.+..+++.++++++||+
T Consensus       129 ~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~------------~~-~~~~v~~~~~~~~av~~ADI  195 (315)
T PRK06823        129 SAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYA------------QA-LGFAVNTTLDAAEVAHAANL  195 (315)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHH------------Hh-cCCcEEEECCHHHHhcCCCE
Confidence            468999999999999998887545578999999999988776421            00 01235668899999999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      |+.|+++..          |    +..     .+.+++|+.|...++..|+.
T Consensus       196 V~taT~s~~----------P----~~~-----~~~l~~G~hi~~iGs~~p~~  228 (315)
T PRK06823        196 IVTTTPSRE----------P----LLQ-----AEDIQPGTHITAVGADSPGK  228 (315)
T ss_pred             EEEecCCCC----------c----eeC-----HHHcCCCcEEEecCCCCccc
Confidence            999976531          1    111     13567899887655555554

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.37  E-value=0.0018  Score=62.66  Aligned_cols=66  Identities=15%  Similarity=0.173  Sum_probs=48.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHc-CCCCe-EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH-hcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALK-CPKIE-VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH-VAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~-~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a-~~~   78 (480)
                      +||+|||+|+||..++..|.+. ..+++ +.++++++++.+.+...                    ....+|+++. ...
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~--------------------~~~~~~l~~ll~~~   62 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR--------------------VALLDGLPGLLAWR   62 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc--------------------CcccCCHHHHhhcC
Confidence            6999999999999999998763 12355 44588888777766542                    2345677774 478


Q ss_pred             CcEEEEecc
Q 011654           79 ADIVFVSVN   87 (480)
Q Consensus        79 aDvVii~Vp   87 (480)
                      +|+|+.|-+
T Consensus        63 ~DlVVE~A~   71 (267)
T PRK13301         63 PDLVVEAAG   71 (267)
T ss_pred             CCEEEECCC
Confidence            999999953

>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases

Probab=97.37  E-value=0.0013  Score=66.50  Aligned_cols=121  Identities=17%  Similarity=0.245  Sum_probs=71.1

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcC-----CCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKC-----PKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~-----~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a   75 (480)
                      .||+|+|+ |.+|..++..|....     .+.+|.++|+++.. +.+ .+..    -++.+... ...++++.++++.++
T Consensus         3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~-~~~-~g~~----~Dl~d~~~-~~~~~~~~~~~~~~~   75 (325)
T cd01336           3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPAL-KAL-EGVV----MELQDCAF-PLLKSVVATTDPEEA   75 (325)
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcc-ccc-ccee----eehhhccc-cccCCceecCCHHHH
Confidence            58999999 999999999998741     13589999997531 111 1110    01111000 001244556776677


Q ss_pred             hccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           76 VAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      +++||+||++-..+....   .++    ..+.+.+++....|.++.+++.++++-| .|...
T Consensus        76 l~~aDiVI~tAG~~~~~~---~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvs-NPvD~  133 (325)
T cd01336          76 FKDVDVAILVGAMPRKEG---MERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVG-NPANT  133 (325)
T ss_pred             hCCCCEEEEeCCcCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEec-CcHHH
Confidence            999999999987654321   111    1233444666677777765555555433 45543

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK02318 mannitol-1-phosphate 5-dehydrogenase; Provisional

Probab=97.36  E-value=0.0012  Score=68.13  Aligned_cols=44  Identities=30%  Similarity=0.351  Sum_probs=38.8

Q ss_pred             cEEEEEcCChhHHHH-HHHHHHcCCCCeEEEEeCCHHHHHHHHCCCC
Q 011654            2 VKICCIGAGYVGGPT-MAVIALKCPKIEVAVVDISVSRIAAWNGDQL   47 (480)
Q Consensus         2 mkI~VIGlG~~G~~l-A~~La~~~~G~~V~~~D~~~~~v~~l~~~~~   47 (480)
                      |||.++|+|.+|... +..|++.  |++|+++|++++.+++|++...
T Consensus         1 mki~~~GaGa~gr~~~~~~l~~~--g~~V~~vd~~~~~v~aL~~qgl   45 (381)
T PRK02318          1 MKAVHFGAGNIGRGFIGKLLADN--GFEVTFVDVNQELIDALNKRKS   45 (381)
T ss_pred             CceEEECCchhhHHHHHHHHHhC--CCeEEEEECCHHHHHHHhcCCC
Confidence            899999999999855 7788877  8999999999999999997644

>PRK06046 alanine dehydrogenase; Validated

Probab=97.36  E-value=0.0016  Score=65.93  Aligned_cols=100  Identities=16%  Similarity=0.116  Sum_probs=68.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+|+|||+|.+|...+..|+...+-..|.+||+++++.+.+.+...        +   . ..-.+...++++++++ +|+
T Consensus       130 ~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~--------~---~-~~~~v~~~~~~~~~l~-aDi  196 (326)
T PRK06046        130 KVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMS--------S---V-VGCDVTVAEDIEEACD-CDI  196 (326)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHH--------h---h-cCceEEEeCCHHHHhh-CCE
Confidence            4799999999999999988854223578899999998887764210        0   0 0112556788888786 999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      |++|+|+..          |    +..     ...+++|+.|...++..|+.
T Consensus       197 Vv~aTps~~----------P----~~~-----~~~l~~g~hV~~iGs~~p~~  229 (326)
T PRK06046        197 LVTTTPSRK----------P----VVK-----AEWIKEGTHINAIGADAPGK  229 (326)
T ss_pred             EEEecCCCC----------c----Eec-----HHHcCCCCEEEecCCCCCcc
Confidence            999987531          1    111     13467898887655555554

>PLN00106 malate dehydrogenase

Probab=97.33  E-value=0.0014  Score=66.03  Aligned_cols=113  Identities=19%  Similarity=0.253  Sum_probs=65.8

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE---EecCHHHHhc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF---FSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~---~t~d~~~a~~   77 (480)
                      .||+|||+ |.+|..+|..|+.+....++.++|+++.      .+.       .-++......-.+.   -++|+.++++
T Consensus        19 ~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~------~g~-------a~Dl~~~~~~~~i~~~~~~~d~~~~l~   85 (323)
T PLN00106         19 FKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT------PGV-------AADVSHINTPAQVRGFLGDDQLGDALK   85 (323)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC------Cee-------EchhhhCCcCceEEEEeCCCCHHHHcC
Confidence            48999999 9999999999997622458999999871      110       00010000001232   2344566799


Q ss_pred             cCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVK  132 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g  132 (480)
                      ++|+||++...|..+.   .++    ..+...+++..+.+.++.+ +.+|+ .+|.|..
T Consensus        86 ~aDiVVitAG~~~~~g---~~R~dll~~N~~i~~~i~~~i~~~~p-~aivi-vvSNPvD  139 (323)
T PLN00106         86 GADLVIIPAGVPRKPG---MTRDDLFNINAGIVKTLCEAVAKHCP-NALVN-IISNPVN  139 (323)
T ss_pred             CCCEEEEeCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHCC-CeEEE-EeCCCcc
Confidence            9999999988765421   010    1223344555556666553 34343 3566665

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.32  E-value=0.0011  Score=67.09  Aligned_cols=76  Identities=24%  Similarity=0.319  Sum_probs=56.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.+|...+..++...+..+|.+|++++++.+.+.+....           . ..-.+...+|+++++.++|+
T Consensus       133 ~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~-----------~-~g~~v~~~~d~~~al~~aDi  200 (330)
T PRK08291        133 SRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRA-----------E-LGIPVTVARDVHEAVAGADI  200 (330)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhh-----------c-cCceEEEeCCHHHHHccCCE
Confidence            57999999999999888887532246899999999999888752100           0 00124557888888999999


Q ss_pred             EEEeccCC
Q 011654           82 VFVSVNTP   89 (480)
Q Consensus        82 Vii~Vptp   89 (480)
                      |+.|+|+.
T Consensus       201 Vi~aT~s~  208 (330)
T PRK08291        201 IVTTTPSE  208 (330)
T ss_pred             EEEeeCCC
Confidence            99997753

>PRK07574 formate dehydrogenase; Provisional

Probab=97.31  E-value=0.001  Score=68.44  Aligned_cols=102  Identities=17%  Similarity=0.269  Sum_probs=76.0

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.          +-...+++.|...|.+|.+|||.....+...++                      ++
T Consensus       189 ~L~gktVGIvG~G----------~IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~----------------------g~  236 (385)
T PRK07574        189 DLEGMTVGIVGAG----------RIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQEL----------------------GL  236 (385)
T ss_pred             ecCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCCchhhHhhc----------------------Cc
Confidence            4789999999984          478899999999999999999986433322221                      24


Q ss_pred             eeecCHHHhcccccEEEEEeccc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWD-EFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~-~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      ++..++++.++.+|+|+++..-. +-+. ++ .++.+.|++.+++|++.+  ++|.+.+
T Consensus       237 ~~~~~l~ell~~aDvV~l~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~iVDe~AL  294 (385)
T PRK07574        237 TYHVSFDSLVSVCDVVTIHCPLHPETEHLFD-ADVLSRMKRGSYLVNTARGKIVDRDAV  294 (385)
T ss_pred             eecCCHHHHhhcCCEEEEcCCCCHHHHHHhC-HHHHhcCCCCcEEEECCCCchhhHHHH
Confidence            45568999999999999998753 3333 34 566778998889999854  5565443

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=97.29  E-value=0.0014  Score=70.49  Aligned_cols=102  Identities=22%  Similarity=0.289  Sum_probs=76.9

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.          +-...+++.|...|.+|.+|||+...+.. .++                      +
T Consensus       134 ~~l~gktvgIiG~G----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~~----------------------g  180 (525)
T TIGR01327       134 TELYGKTLGVIGLG----------RIGSIVAKRAKAFGMKVLAYDPYISPERA-EQL----------------------G  180 (525)
T ss_pred             cccCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCChhHH-Hhc----------------------C
Confidence            35789999999984          47889999999999999999998654322 111                      2


Q ss_pred             eeeecCHHHhcccccEEEEEeccc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWD-EFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      +.+.+++++.++++|+|+++.+.. +-+. ++ .+..+.|++.+++|++.+  ++|.+.+
T Consensus       181 ~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~~vde~aL  239 (525)
T TIGR01327       181 VELVDDLDELLARADFITVHTPLTPETRGLIG-AEELAKMKKGVIIVNCARGGIIDEAAL  239 (525)
T ss_pred             CEEcCCHHHHHhhCCEEEEccCCChhhccCcC-HHHHhcCCCCeEEEEcCCCceeCHHHH
Confidence            344568999999999999999874 4454 44 455678998889999854  6676544

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=97.28  E-value=0.001  Score=60.88  Aligned_cols=98  Identities=21%  Similarity=0.291  Sum_probs=63.2

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEE
Q 011654            4 ICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIV   82 (480)
Q Consensus         4 I~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvV   82 (480)
                      |.|+|+ |.+|..++..|.+.  |++|+++-|++++.+. ..+ ..+..            +.+.-.++..++++++|+|
T Consensus         1 I~V~GatG~vG~~l~~~L~~~--~~~V~~~~R~~~~~~~-~~~-~~~~~------------~d~~d~~~~~~al~~~d~v   64 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQLLRR--GHEVTALVRSPSKAED-SPG-VEIIQ------------GDLFDPDSVKAALKGADAV   64 (183)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT--TSEEEEEESSGGGHHH-CTT-EEEEE------------SCTTCHHHHHHHHTTSSEE
T ss_pred             eEEECCCChHHHHHHHHHHHC--CCEEEEEecCchhccc-ccc-cccce------------eeehhhhhhhhhhhhcchh
Confidence            789996 99999999999998  8999999999998877 221 11100            1110012345678899999


Q ss_pred             EEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           83 FVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      |.+++.+..          |....+.+++.+... +...+|+.+|.
T Consensus        65 i~~~~~~~~----------~~~~~~~~~~a~~~~-~~~~~v~~s~~   99 (183)
T PF13460_consen   65 IHAAGPPPK----------DVDAAKNIIEAAKKA-GVKRVVYLSSA   99 (183)
T ss_dssp             EECCHSTTT----------HHHHHHHHHHHHHHT-TSSEEEEEEET
T ss_pred             hhhhhhhcc----------ccccccccccccccc-ccccceeeecc
Confidence            999976431          344445555544443 33455555443

...

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=97.27  E-value=0.00069  Score=71.51  Aligned_cols=73  Identities=19%  Similarity=0.244  Sum_probs=52.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC-CCCCCCCCChHHHHHhhcCCCEEEecCHHHH-hccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG-DQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH-VAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a-~~~a   79 (480)
                      |+|.|+|+|.+|..+|..|.+.  |++|+++|+++++++.+.+ ...++..            +..+-...++++ +.++
T Consensus         1 m~viIiG~G~ig~~~a~~L~~~--g~~v~vid~~~~~~~~~~~~~~~~~~~------------gd~~~~~~l~~~~~~~a   66 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENLSGE--NNDVTVIDTDEERLRRLQDRLDVRTVV------------GNGSSPDVLREAGAEDA   66 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhhcCEEEEE------------eCCCCHHHHHHcCCCcC
Confidence            7999999999999999999988  9999999999999988865 2111110            111111123333 5789


Q ss_pred             cEEEEeccC
Q 011654           80 DIVFVSVNT   88 (480)
Q Consensus        80 DvVii~Vpt   88 (480)
                      |.++++++.
T Consensus        67 ~~vi~~~~~   75 (453)
T PRK09496         67 DLLIAVTDS   75 (453)
T ss_pred             CEEEEecCC
Confidence            999999764

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.26  E-value=0.00099  Score=62.45  Aligned_cols=32  Identities=22%  Similarity=0.344  Sum_probs=29.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDIS   35 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~   35 (480)
                      .||+|||+|.+|..+|..|++.  |+ +++++|.+
T Consensus        22 ~~V~IvG~GglGs~ia~~La~~--Gvg~i~lvD~D   54 (200)
T TIGR02354        22 ATVAICGLGGLGSNVAINLARA--GIGKLILVDFD   54 (200)
T ss_pred             CcEEEECcCHHHHHHHHHHHHc--CCCEEEEECCC
Confidence            4799999999999999999998  88 69999998

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>PLN03139 formate dehydrogenase; Provisional

Probab=97.26  E-value=0.0014  Score=67.36  Aligned_cols=102  Identities=15%  Similarity=0.194  Sum_probs=76.3

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.          +-...+++.|..-|.+|.+|||.....+....                      .++
T Consensus       196 ~L~gktVGIVG~G----------~IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~----------------------~g~  243 (386)
T PLN03139        196 DLEGKTVGTVGAG----------RIGRLLLQRLKPFNCNLLYHDRLKMDPELEKE----------------------TGA  243 (386)
T ss_pred             CCCCCEEEEEeec----------HHHHHHHHHHHHCCCEEEEECCCCcchhhHhh----------------------cCc
Confidence            5789999999975          47889999999999999999997533222221                      123


Q ss_pred             eeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      .+.+++++.++.+|+|+++.+. ++.++ ++ .++.+.|++.+++|++-+  ++|.+.+
T Consensus       244 ~~~~~l~ell~~sDvV~l~lPlt~~T~~li~-~~~l~~mk~ga~lIN~aRG~iVDe~AL  301 (386)
T PLN03139        244 KFEEDLDAMLPKCDVVVINTPLTEKTRGMFN-KERIAKMKKGVLIVNNARGAIMDTQAV  301 (386)
T ss_pred             eecCCHHHHHhhCCEEEEeCCCCHHHHHHhC-HHHHhhCCCCeEEEECCCCchhhHHHH
Confidence            4456899999999999999885 44444 34 467789998889999854  6665544

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.25  E-value=0.0012  Score=67.09  Aligned_cols=102  Identities=15%  Similarity=0.106  Sum_probs=70.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+++|||+|..+...+..+..-.+-.+|.+|++++++.+.+.+...   +.          .-.+..++++++++++||+
T Consensus       130 ~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~---~~----------~~~v~~~~~~~~av~~ADI  196 (346)
T PRK07589        130 RTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLA---GP----------GLRIVACRSVAEAVEGADI  196 (346)
T ss_pred             cEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHH---hc----------CCcEEEeCCHHHHHhcCCE
Confidence            3689999999999988777764445689999999999888764210   00          1236678899999999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      |+.|+++...        .|    +   ++  .+.+++|+.|....+..|+.
T Consensus       197 IvtaT~S~~~--------~P----v---l~--~~~lkpG~hV~aIGs~~p~~  231 (346)
T PRK07589        197 ITTVTADKTN--------AT----I---LT--DDMVEPGMHINAVGGDCPGK  231 (346)
T ss_pred             EEEecCCCCC--------Cc----e---ec--HHHcCCCcEEEecCCCCCCc
Confidence            9999864310        01    1   11  13568898876555555554

>TIGR01771 L-LDH-NAD L-lactate dehydrogenase

Probab=97.25  E-value=0.0023  Score=63.84  Aligned_cols=114  Identities=20%  Similarity=0.256  Sum_probs=66.7

Q ss_pred             EEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHHhccCcEEEE
Q 011654            6 CIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKHVAEADIVFV   84 (480)
Q Consensus         6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a~~~aDvVii   84 (480)
                      |||+|.+|.++|..|+.+.-.-++.++|+++++.+.....        +..... ....+.+.+ .+++ ++++||+||+
T Consensus         1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D--------l~~~~~-~~~~~~~i~~~~~~-~~~daDivVi   70 (299)
T TIGR01771         1 IIGAGNVGSSTAFALLNQGIADEIVLIDINKDKAEGEAMD--------LQHAAS-FLPTPKKIRSGDYS-DCKDADLVVI   70 (299)
T ss_pred             CCCcCHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHH--------HHHhhc-ccCCCeEEecCCHH-HHCCCCEEEE
Confidence            6999999999999998773234799999988765543321        000000 001123333 4454 5999999999


Q ss_pred             eccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           85 SVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        85 ~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      +...|..+.   .++    .-+...+++..+.+.++.+. .+|++- |.|..+.
T Consensus        71 tag~~rk~g---~~R~dll~~N~~i~~~~~~~i~~~~p~-~~vivv-sNP~d~~  119 (299)
T TIGR01771        71 TAGAPQKPG---ETRLELVGRNVRIMKSIVPEVVKSGFD-GIFLVA-TNPVDIL  119 (299)
T ss_pred             CCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEe-CCHHHHH
Confidence            988765431   111    11233456666677776544 444332 4565543

This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.24  E-value=0.0015  Score=65.62  Aligned_cols=101  Identities=21%  Similarity=0.170  Sum_probs=62.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+++|||+|..+...+..++...+-.+|.+|++++++.+.+.+...            . ..-.+..++|+++++++||+
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~------------~-~~~~v~~~~~~~~av~~aDi  195 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLR------------D-LGVPVVAVDSAEEAVRGADI  195 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHH------------C-CCTCEEEESSHHHHHTTSSE
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhc------------c-ccccceeccchhhhcccCCE
Confidence            3689999999999999998876555689999999999888765211            0 11357788999999999999


Q ss_pred             EEEeccCCCC-cCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTK-TQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~-~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      |+.|+|+... +       ..+           ...+++|+.|...++..|+.
T Consensus       196 i~taT~s~~~~P-------~~~-----------~~~l~~g~hi~~iGs~~~~~  230 (313)
T PF02423_consen  196 IVTATPSTTPAP-------VFD-----------AEWLKPGTHINAIGSYTPGM  230 (313)
T ss_dssp             EEE----SSEEE-------SB------------GGGS-TT-EEEE-S-SSTTB
T ss_pred             EEEccCCCCCCc-------ccc-----------HHHcCCCcEEEEecCCCCch
Confidence            9999875420 1       011           24577888887655554543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>COG2910 Putative NADH-flavin reductase [General function prediction only]

Probab=97.21  E-value=0.0021  Score=58.37  Aligned_cols=72  Identities=24%  Similarity=0.302  Sum_probs=52.9

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+ |.+|..++.-..++  ||+|+.+-||++++... ++... ..            +.+.--+..++.+.+-|
T Consensus         1 mKIaiIgAsG~~Gs~i~~EA~~R--GHeVTAivRn~~K~~~~-~~~~i-~q------------~Difd~~~~a~~l~g~D   64 (211)
T COG2910           1 MKIAIIGASGKAGSRILKEALKR--GHEVTAIVRNASKLAAR-QGVTI-LQ------------KDIFDLTSLASDLAGHD   64 (211)
T ss_pred             CeEEEEecCchhHHHHHHHHHhC--CCeeEEEEeChHhcccc-cccee-ec------------ccccChhhhHhhhcCCc
Confidence            89999995 99999999999988  99999999999988664 22111 11            11111123345688999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||-++...
T Consensus        65 aVIsA~~~~   73 (211)
T COG2910          65 AVISAFGAG   73 (211)
T ss_pred             eEEEeccCC
Confidence            999998754

>PRK10206 putative oxidoreductase; Provisional

Probab=97.21  E-value=0.0017  Score=66.16  Aligned_cols=72  Identities=13%  Similarity=0.196  Sum_probs=46.6

Q ss_pred             CcEEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-
Q 011654            1 MVKICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-   77 (480)
                      |+||||||+|.++.- .+..+....++++|. ++|+++++. ...+.                 -+...+.+|+++.++ 
T Consensus         1 ~irvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~-~~~~~-----------------~~~~~~~~~~~ell~~   62 (344)
T PRK10206          1 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQAPI-----------------YSHIHFTSDLDEVLND   62 (344)
T ss_pred             CeEEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH-HHHHh-----------------cCCCcccCCHHHHhcC
Confidence            579999999997653 344343322367775 589987654 22221                 022345678888775 


Q ss_pred             -cCcEEEEeccCCC
Q 011654           78 -EADIVFVSVNTPT   90 (480)
Q Consensus        78 -~aDvVii~Vptp~   90 (480)
                       +.|+|+||+|+..
T Consensus        63 ~~iD~V~I~tp~~~   76 (344)
T PRK10206         63 PDVKLVVVCTHADS   76 (344)
T ss_pred             CCCCEEEEeCCchH
Confidence             6799999988654

>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3

Probab=97.20  E-value=0.0012  Score=60.71  Aligned_cols=77  Identities=22%  Similarity=0.225  Sum_probs=50.5

Q ss_pred             EEEEEcCChhHHHHHH--HHHHc--CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhc
Q 011654            3 KICCIGAGYVGGPTMA--VIALK--CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~--~La~~--~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~   77 (480)
                      ||+|||.|..-.+.-.  .+...  .++.++.++|+|+++++....-        .+.+.++ ...-+++.|+|.++|++
T Consensus         1 KI~iIGaGS~~~~~~l~~~l~~~~~l~~~ei~L~Did~~RL~~~~~~--------~~~~~~~~~~~~~v~~ttd~~eAl~   72 (183)
T PF02056_consen    1 KITIIGAGSTYFPLLLLGDLLRTEELSGSEIVLMDIDEERLEIVERL--------ARRMVEEAGADLKVEATTDRREALE   72 (183)
T ss_dssp             EEEEETTTSCCHHHHHHHHHHCTTTSTEEEEEEE-SCHHHHHHHHHH--------HHHHHHHCTTSSEEEEESSHHHHHT
T ss_pred             CEEEECCchHhhHHHHHHHHhcCccCCCcEEEEEcCCHHHHHHHHHH--------HHHHHHhcCCCeEEEEeCCHHHHhC
Confidence            8999999998777433  22221  2456899999999998865431        1122222 11235788999999999


Q ss_pred             cCcEEEEecc
Q 011654           78 EADIVFVSVN   87 (480)
Q Consensus        78 ~aDvVii~Vp   87 (480)
                      +||+||.++-
T Consensus        73 gADfVi~~ir   82 (183)
T PF02056_consen   73 GADFVINQIR   82 (183)
T ss_dssp             TESEEEE---
T ss_pred             CCCEEEEEee
Confidence            9999999975

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.20  E-value=0.0024  Score=66.89  Aligned_cols=70  Identities=27%  Similarity=0.394  Sum_probs=53.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|+|||+|.||..++..|...  |. +|+++++++++.+.+.+..                ........+..+++.++|
T Consensus       183 ~~vlViGaG~iG~~~a~~L~~~--G~~~V~v~~r~~~ra~~la~~~----------------g~~~~~~~~~~~~l~~aD  244 (423)
T PRK00045        183 KKVLVIGAGEMGELVAKHLAEK--GVRKITVANRTLERAEELAEEF----------------GGEAIPLDELPEALAEAD  244 (423)
T ss_pred             CEEEEECchHHHHHHHHHHHHC--CCCeEEEEeCCHHHHHHHHHHc----------------CCcEeeHHHHHHHhccCC
Confidence            5799999999999999999887  76 8999999999887665421                001111234556678999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||.|++.|
T Consensus       245 vVI~aT~s~  253 (423)
T PRK00045        245 IVISSTGAP  253 (423)
T ss_pred             EEEECCCCC
Confidence            999998865

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=97.20  E-value=0.0014  Score=66.82  Aligned_cols=98  Identities=23%  Similarity=0.358  Sum_probs=55.1

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      ||||+|||+ |++|..++..|.++ ++++++.+-.+.+.-+.+.+....+.  +.         ....+.+-.+....++
T Consensus         2 m~kVaIiGAtG~vG~~l~~~L~~~-p~~elv~v~~~~~~g~~l~~~~~~~~--~~---------~~~~~~~~~~~~~~~v   69 (343)
T PRK00436          2 MIKVGIVGASGYTGGELLRLLLNH-PEVEIVAVTSRSSAGKPLSDVHPHLR--GL---------VDLVLEPLDPEILAGA   69 (343)
T ss_pred             CeEEEEECCCCHHHHHHHHHHHcC-CCceEEEEECccccCcchHHhCcccc--cc---------cCceeecCCHHHhcCC
Confidence            679999997 99999999999875 67887664333332222221100000  00         0111211111235789


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      |+||+|+|+..+               .+....+   +..|..||+.|.
T Consensus        70 D~Vf~alP~~~~---------------~~~v~~a---~~aG~~VID~S~  100 (343)
T PRK00436         70 DVVFLALPHGVS---------------MDLAPQL---LEAGVKVIDLSA  100 (343)
T ss_pred             CEEEECCCcHHH---------------HHHHHHH---HhCCCEEEECCc
Confidence            999999886421               2222222   345788998775

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=97.18  E-value=0.0018  Score=63.61  Aligned_cols=107  Identities=17%  Similarity=0.249  Sum_probs=80.2

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCCh-HHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTE-DQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      .||+++||.          .+..+++..|.++|++|.+||..... .+....                      .+....
T Consensus         1 ~kIafIGLG----------~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~----------------------~Ga~~a   48 (286)
T COG2084           1 MKIAFIGLG----------IMGSPMAANLLKAGHEVTVYNRTPEKAAELLAA----------------------AGATVA   48 (286)
T ss_pred             CeEEEEcCc----------hhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHH----------------------cCCccc
Confidence            379999984          58999999999999999999998765 433332                      245667


Q ss_pred             cCHHHhcccccEEEEEecccc-cccccH--HHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEE
Q 011654          404 WDAYQAAKDAHGVCILTEWDE-FKTLDY--QKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVY  463 (480)
Q Consensus       404 ~~~~~a~~~ad~vvi~t~h~~-~~~~~~--~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~  463 (480)
                      .++.++++++|+|+++..-+. .++.-.  ..+.+.+++..++||...+=+..      .+++.|+.|.
T Consensus        49 ~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~l  117 (286)
T COG2084          49 ASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFL  117 (286)
T ss_pred             CCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEE
Confidence            889999999999999988754 333222  45677788888999998876532      3445677764

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=97.17  E-value=0.0015  Score=66.57  Aligned_cols=97  Identities=24%  Similarity=0.398  Sum_probs=57.2

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHHhcc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a~~~   78 (480)
                      |||+|||+ |++|..+...|.++ |++++. +++.+.+.-+.+.+-.     +.+...      ..+.+. .+.++.+.+
T Consensus         1 ~kVaIiGATG~vG~ellr~L~~h-P~~el~~l~~s~~sagk~~~~~~-----~~l~~~------~~~~~~~~~~~~~~~~   68 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLLLNH-PEVEITYLVSSRESAGKPVSEVH-----PHLRGL------VDLNLEPIDEEEIAED   68 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcC-CCceEEEEeccchhcCCChHHhC-----cccccc------CCceeecCCHHHhhcC
Confidence            79999998 99999999999975 788888 4576543222121100     000000      011222 244554468


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      +|++|+|+|+...               .+....+   +..|..||+.|+
T Consensus        69 ~DvVf~alP~~~s---------------~~~~~~~---~~~G~~VIDlS~  100 (346)
T TIGR01850        69 ADVVFLALPHGVS---------------AELAPEL---LAAGVKVIDLSA  100 (346)
T ss_pred             CCEEEECCCchHH---------------HHHHHHH---HhCCCEEEeCCh
Confidence            9999999986321               2222322   245788888775

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent

Probab=97.16  E-value=0.0029  Score=63.79  Aligned_cols=120  Identities=16%  Similarity=0.215  Sum_probs=68.4

Q ss_pred             EEEEEcC-ChhHHHHHHHHHHcCC-----CCeEEEEeCCHHH--HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH
Q 011654            3 KICCIGA-GYVGGPTMAVIALKCP-----KIEVAVVDISVSR--IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK   74 (480)
Q Consensus         3 kI~VIGl-G~~G~~lA~~La~~~~-----G~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~   74 (480)
                      ||+|||+ |.+|..+|..|+...-     .+++.++|++++.  .+....   .     +....... ...+..+++..+
T Consensus         1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~~a~g~~~---D-----l~d~~~~~-~~~~~~~~~~~~   71 (324)
T TIGR01758         1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMKVLEGVVM---E-----LMDCAFPL-LDGVVPTHDPAV   71 (324)
T ss_pred             CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCcccccceeEe---e-----hhcccchh-cCceeccCChHH
Confidence            6999999 9999999999987410     2269999996542  221111   0     11100000 012344445345


Q ss_pred             HhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           75 HVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        75 a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      ++++||+||++-..|....   .++    ..+.+.+++..+.|.++.+++.+++. -|.|....-
T Consensus        72 ~~~~aDiVVitAG~~~~~~---~tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiiv-vsNPvDv~t  132 (324)
T TIGR01758        72 AFTDVDVAILVGAFPRKEG---MERRDLLSKNVKIFKEQGRALDKLAKKDCKVLV-VGNPANTNA  132 (324)
T ss_pred             HhCCCCEEEEcCCCCCCCC---CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEE-eCCcHHHHH
Confidence            6999999999988765431   011    11233456666777777544555544 346665543

This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography

>PRK13243 glyoxylate reductase; Reviewed

Probab=97.13  E-value=0.0028  Score=64.25  Aligned_cols=100  Identities=16%  Similarity=0.272  Sum_probs=74.4

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.          .-...+++.|...|.+|.+|||...... ...+                      +.
T Consensus       147 ~L~gktvgIiG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------~~  193 (333)
T PRK13243        147 DVYGKTIGIIGFG----------RIGQAVARRAKGFGMRILYYSRTRKPEA-EKEL----------------------GA  193 (333)
T ss_pred             CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCCChhh-HHHc----------------------CC
Confidence            4689999999984          4788999999999999999999765432 1111                      12


Q ss_pred             eeecCHHHhcccccEEEEEecccc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDE-FKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~-~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      .+ .++++.++++|+|+++++..+ -+. ++ .++.+.|++.+++|++.+  ++|.+.+
T Consensus       194 ~~-~~l~ell~~aDiV~l~lP~t~~T~~~i~-~~~~~~mk~ga~lIN~aRg~~vd~~aL  250 (333)
T PRK13243        194 EY-RPLEELLRESDFVSLHVPLTKETYHMIN-EERLKLMKPTAILVNTARGKVVDTKAL  250 (333)
T ss_pred             Ee-cCHHHHHhhCCEEEEeCCCChHHhhccC-HHHHhcCCCCeEEEECcCchhcCHHHH
Confidence            22 478999999999999998754 333 44 456788998889999854  6665544

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=97.11  E-value=0.002  Score=65.12  Aligned_cols=98  Identities=20%  Similarity=0.238  Sum_probs=73.4

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.-          -+..+++.|...|.+|.+|||......   .                       .+
T Consensus       143 ~l~g~~VgIIG~G~----------IG~~vA~~L~~~G~~V~~~d~~~~~~~---~-----------------------~~  186 (330)
T PRK12480        143 PVKNMTVAIIGTGR----------IGAATAKIYAGFGATITAYDAYPNKDL---D-----------------------FL  186 (330)
T ss_pred             ccCCCEEEEECCCH----------HHHHHHHHHHhCCCEEEEEeCChhHhh---h-----------------------hh
Confidence            46788999999854          788999999999999999999754321   0                       12


Q ss_pred             eeecCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCC--CCChHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRN--ILDVEK  454 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~  454 (480)
                      .+..+++++++++|+|+++.+... .+.+=-..+...|++.+++|++.+  ++|.+.
T Consensus       187 ~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~~vd~~a  243 (330)
T PRK12480        187 TYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPD  243 (330)
T ss_pred             hccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCccccCHHH
Confidence            344688999999999999998854 333223567788998889999844  566543

>PLN02928 oxidoreductase family protein

Probab=97.10  E-value=0.0025  Score=64.98  Aligned_cols=116  Identities=22%  Similarity=0.214  Sum_probs=76.2

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.          +-+..+++.|...|.+|.+|||....+... .++       .|..   ........
T Consensus       155 ~~l~gktvGIiG~G----------~IG~~vA~~l~afG~~V~~~dr~~~~~~~~-~~~-------~~~~---~~~~~~~~  213 (347)
T PLN02928        155 DTLFGKTVFILGYG----------AIGIELAKRLRPFGVKLLATRRSWTSEPED-GLL-------IPNG---DVDDLVDE  213 (347)
T ss_pred             cCCCCCEEEEECCC----------HHHHHHHHHHhhCCCEEEEECCCCChhhhh-hhc-------cccc---cccccccc
Confidence            46789999999983          578899999999999999999975432211 000       0000   00000000


Q ss_pred             eeeecCHHHhcccccEEEEEecc-cccccccHHHHHHhcCCCCEEEEcCC--CCChHHHh
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEW-DEFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKLR  456 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~  456 (480)
                      .....+++++++.+|+|+++++. ++-+.+=-.+..+.|++.+++|++-+  ++|.+.+-
T Consensus       214 ~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~  273 (347)
T PLN02928        214 KGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVL  273 (347)
T ss_pred             cCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHH
Confidence            01235899999999999999886 34444322566788998889999843  77765443

>PLN00203 glutamyl-tRNA reductase

Probab=97.09  E-value=0.0012  Score=70.67  Aligned_cols=73  Identities=27%  Similarity=0.313  Sum_probs=54.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|||+|.||..++..|...  |. +|+++++++++.+.+.+...     +..        -.....++..+++.++|
T Consensus       267 kkVlVIGAG~mG~~~a~~L~~~--G~~~V~V~nRs~era~~La~~~~-----g~~--------i~~~~~~dl~~al~~aD  331 (519)
T PLN00203        267 ARVLVIGAGKMGKLLVKHLVSK--GCTKMVVVNRSEERVAALREEFP-----DVE--------IIYKPLDEMLACAAEAD  331 (519)
T ss_pred             CEEEEEeCHHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHHhC-----CCc--------eEeecHhhHHHHHhcCC
Confidence            5799999999999999999987  75 79999999999888775210     000        00112245566789999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||.|++.+
T Consensus       332 VVIsAT~s~  340 (519)
T PLN00203        332 VVFTSTSSE  340 (519)
T ss_pred             EEEEccCCC
Confidence            999998754

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=97.08  E-value=0.0038  Score=61.89  Aligned_cols=125  Identities=13%  Similarity=0.098  Sum_probs=83.7

Q ss_pred             HHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCC
Q 011654          313 RIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPM  392 (480)
Q Consensus       313 ~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (480)
                      .+.+..+..+.+++|+|+|...          -+..+++.|...|++|.++|...........++               
T Consensus       140 ~al~~~~~~l~gk~v~IiG~G~----------iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g---------------  194 (287)
T TIGR02853       140 MAIEHTDFTIHGSNVMVLGFGR----------TGMTIARTFSALGARVFVGARSSADLARITEMG---------------  194 (287)
T ss_pred             HHHHhcCCCCCCCEEEEEcChH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC---------------
Confidence            3333333467899999999855          789999999999999999998653322111111               


Q ss_pred             CCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC---CChHHHhhcCcEEE-EecCC
Q 011654          393 SPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI---LDVEKLREIGFIVY-SIGKP  468 (480)
Q Consensus       393 ~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~-~iG~~  468 (480)
                          ...+. .+++.+.++++|+|+..+++.-+   + ....+.|++..+|||....   .|-+.+++.|.+.+ .-|-+
T Consensus       195 ----~~~~~-~~~l~~~l~~aDiVint~P~~ii---~-~~~l~~~k~~aliIDlas~Pg~tdf~~Ak~~G~~a~~~~glP  265 (287)
T TIGR02853       195 ----LIPFP-LNKLEEKVAEIDIVINTIPALVL---T-ADVLSKLPKHAVIIDLASKPGGTDFEYAKKRGIKALLAPGLP  265 (287)
T ss_pred             ----Ceeec-HHHHHHHhccCCEEEECCChHHh---C-HHHHhcCCCCeEEEEeCcCCCCCCHHHHHHCCCEEEEeCCCC
Confidence                01111 23567788999999999877642   3 3455678888899999663   34567778887764 34555


Q ss_pred             CCc
Q 011654          469 LDP  471 (480)
Q Consensus       469 ~~~  471 (480)
                      ...
T Consensus       266 g~~  268 (287)
T TIGR02853       266 GIV  268 (287)
T ss_pred             ccc
Confidence            543

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=97.07  E-value=0.0043  Score=62.93  Aligned_cols=109  Identities=14%  Similarity=0.184  Sum_probs=70.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCC-CCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCP-KIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~-G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      .||+|||+ .||...+..+... + +++++ ++|+++++.+++.+..                  ++...+|+++.+.+.
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~-~~~~eLvaV~d~~~erA~~~A~~~------------------gi~~y~~~eell~d~   63 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAA-PERFELAGILAQGSERSRALAHRL------------------GVPLYCEVEELPDDI   63 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhC-CCCcEEEEEEcCCHHHHHHHHHHh------------------CCCccCCHHHHhcCC
Confidence            58999999 6799889888875 3 57766 4899999988877521                  123568899988889


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++++||..-.         . .. .+.   ....+..|.-|+.+--+.....+++.+..++.
T Consensus        64 Di~~V~ipt~~P~---------~-~H-~e~---a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~  114 (343)
T TIGR01761        64 DIACVVVRSAIVG---------G-QG-SAL---ARALLARGIHVLQEHPLHPRDIQDLLRLAERQ  114 (343)
T ss_pred             CEEEEEeCCCCCC---------c-cH-HHH---HHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHc
Confidence            9999999763110         0 11 112   22334567778777655433333444444443

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=97.07  E-value=0.0035  Score=66.57  Aligned_cols=113  Identities=14%  Similarity=0.152  Sum_probs=67.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec-C--------H
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST-D--------I   72 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~-d--------~   72 (480)
                      .|+.|+|+|.+|...+..+...  |..|+++|+++++.+..++-....-+.+..+-- +...+-.+..+ +        .
T Consensus       165 akVlViGaG~iGl~Aa~~ak~l--GA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g-~~~~gYa~~~s~~~~~~~~~~~  241 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEG-GSGDGYAKVMSEEFIAAEMELF  241 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEeccccccc-cccccceeecCHHHHHHHHHHH
Confidence            3899999999999988888877  888999999999988777522111111110000 00001111111 1        2


Q ss_pred             HHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654           73 EKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv  129 (480)
                      .+.++++|+||.|+--|-..       .|-     -+.++..+.+++|.+||+-|.-
T Consensus       242 ~e~~~~~DIVI~TalipG~~-------aP~-----Lit~emv~~MKpGsvIVDlA~d  286 (511)
T TIGR00561       242 AAQAKEVDIIITTALIPGKP-------APK-----LITEEMVDSMKAGSVIVDLAAE  286 (511)
T ss_pred             HHHhCCCCEEEECcccCCCC-------CCe-----eehHHHHhhCCCCCEEEEeeeC
Confidence            23467899999998222100       111     1234556778899999887653

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.07  E-value=0.0034  Score=63.47  Aligned_cols=75  Identities=15%  Similarity=0.156  Sum_probs=56.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+++|||+|.+|...+..|+... + .+|++|++++++.+.+.+...           .. ....+...+++++++.++|
T Consensus       130 ~~v~iiGaG~qA~~~~~al~~~~-~i~~v~V~~R~~~~a~~~a~~~~-----------~~-~g~~v~~~~~~~~av~~aD  196 (326)
T TIGR02992       130 SVVAIFGAGMQARLQLEALTLVR-DIRSARIWARDSAKAEALALQLS-----------SL-LGIDVTAATDPRAAMSGAD  196 (326)
T ss_pred             cEEEEECCCHHHHHHHHHHHHhC-CccEEEEECCCHHHHHHHHHHHH-----------hh-cCceEEEeCCHHHHhccCC
Confidence            47999999999999999997432 4 579999999999888764210           00 0112455688888899999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +|+.|+|++
T Consensus       197 iVvtaT~s~  205 (326)
T TIGR02992       197 IIVTTTPSE  205 (326)
T ss_pred             EEEEecCCC
Confidence            999997753

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.01  E-value=0.0047  Score=61.15  Aligned_cols=79  Identities=15%  Similarity=0.188  Sum_probs=63.1

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+-++.+++|+|+|.+-         ....+++..|.++|+.|.+++-..                              
T Consensus       153 ~~i~l~Gk~V~vIG~s~---------ivG~PmA~~L~~~gatVtv~~~~t------------------------------  193 (301)
T PRK14194        153 TCGDLTGKHAVVIGRSN---------IVGKPMAALLLQAHCSVTVVHSRS------------------------------  193 (301)
T ss_pred             hCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence            34478999999999752         588999999999999999986432                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            .++.++++.||+||.++..+.+-.-+|      +++..+|||..
T Consensus       194 ------~~l~e~~~~ADIVIsavg~~~~v~~~~------ik~GaiVIDvg  231 (301)
T PRK14194        194 ------TDAKALCRQADIVVAAVGRPRLIDADW------LKPGAVVIDVG  231 (301)
T ss_pred             ------CCHHHHHhcCCEEEEecCChhcccHhh------ccCCcEEEEec
Confidence                  256788899999999999998654333      45667999986

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=97.00  E-value=0.0022  Score=66.05  Aligned_cols=96  Identities=18%  Similarity=0.265  Sum_probs=59.4

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE-Ee-cCHHHHhc
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF-FS-TDIEKHVA   77 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~-~t-~d~~~a~~   77 (480)
                      +|||+|+|+ |++|.-+...|..+ |+++++.+..+.+.-+.+......+.            .+... +. .+.++ ++
T Consensus        38 ~~kVaIvGATG~vG~eLlrlL~~h-P~~el~~l~s~~saG~~i~~~~~~l~------------~~~~~~~~~~~~~~-~~  103 (381)
T PLN02968         38 KKRIFVLGASGYTGAEVRRLLANH-PDFEITVMTADRKAGQSFGSVFPHLI------------TQDLPNLVAVKDAD-FS  103 (381)
T ss_pred             ccEEEEECCCChHHHHHHHHHHhC-CCCeEEEEEChhhcCCCchhhCcccc------------CccccceecCCHHH-hc
Confidence            369999996 99999999999987 78899999876543222222111000            01111 11 12222 58


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv  129 (480)
                      ++|+||+|+|..                   +...+.+.+..+..||+.|+-
T Consensus       104 ~~DvVf~Alp~~-------------------~s~~i~~~~~~g~~VIDlSs~  136 (381)
T PLN02968        104 DVDAVFCCLPHG-------------------TTQEIIKALPKDLKIVDLSAD  136 (381)
T ss_pred             CCCEEEEcCCHH-------------------HHHHHHHHHhCCCEEEEcCch
Confidence            899999998742                   233344434457888887763

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=96.99  E-value=0.0051  Score=65.09  Aligned_cols=122  Identities=15%  Similarity=0.177  Sum_probs=85.5

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      .+|+|+|+.          .....++..|.++|.+|.+||...+..+...+...              ..+  ..+..++
T Consensus         2 ~~IgvIGLG----------~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~--------------~~g--~~i~~~~   55 (470)
T PTZ00142          2 SDIGLIGLA----------VMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAK--------------EGN--TRVKGYH   55 (470)
T ss_pred             CEEEEEeEh----------HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhh--------------hcC--CcceecC
Confidence            479999995          48899999999999999999986554322221100              000  1234567


Q ss_pred             CHHHhcc---cccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecCCCCcC
Q 011654          405 DAYQAAK---DAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIGKPLDPW  472 (480)
Q Consensus       405 ~~~~a~~---~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~~~~~~  472 (480)
                      +++++++   .+|+|++++...+.-+--.+.+...+.+..+|||+.+.....      ++++.|+.|.+.|...-+|
T Consensus        56 s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         56 TLEELVNSLKKPRKVILLIKAGEAVDETIDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             CHHHHHhcCCCCCEEEEEeCChHHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            8888886   489999997776533222356777777777999999988543      4556799999998766554

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.99  E-value=0.0039  Score=67.15  Aligned_cols=100  Identities=20%  Similarity=0.285  Sum_probs=75.7

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.          +-...+++.|...|.+|.+|||+...+.. ..                      .++
T Consensus       137 ~l~gktvgIiG~G----------~IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~----------------------~g~  183 (526)
T PRK13581        137 ELYGKTLGIIGLG----------RIGSEVAKRAKAFGMKVIAYDPYISPERA-AQ----------------------LGV  183 (526)
T ss_pred             ccCCCEEEEECCC----------HHHHHHHHHHHhCCCEEEEECCCCChhHH-Hh----------------------cCC
Confidence            4689999999984          47889999999999999999998654322 11                      123


Q ss_pred             eeecCHHHhcccccEEEEEeccc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWD-EFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~-~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      .+. ++++.++.+|+|+++.+.. +-++ ++ .+..+.|++.+++|++.+  ++|.+.+
T Consensus       184 ~~~-~l~ell~~aDiV~l~lP~t~~t~~li~-~~~l~~mk~ga~lIN~aRG~~vde~aL  240 (526)
T PRK13581        184 ELV-SLDELLARADFITLHTPLTPETRGLIG-AEELAKMKPGVRIINCARGGIIDEAAL  240 (526)
T ss_pred             EEE-cHHHHHhhCCEEEEccCCChHhhcCcC-HHHHhcCCCCeEEEECCCCceeCHHHH
Confidence            444 7999999999999999884 4444 34 467788998889999855  6665544

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=96.99  E-value=0.0038  Score=66.40  Aligned_cols=69  Identities=13%  Similarity=0.185  Sum_probs=50.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +++.|+|+|.+|.+++..|++.  |++|+++++++++.+.+.+...                .......+..+ +.++|+
T Consensus       333 k~vlIiGaGgiG~aia~~L~~~--G~~V~i~~R~~~~~~~la~~~~----------------~~~~~~~~~~~-l~~~Di  393 (477)
T PRK09310        333 QHVAIVGAGGAAKAIATTLARA--GAELLIFNRTKAHAEALASRCQ----------------GKAFPLESLPE-LHRIDI  393 (477)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhc----------------cceechhHhcc-cCCCCE
Confidence            5799999999999999999998  8999999999988887754210                00000112222 568999


Q ss_pred             EEEeccCC
Q 011654           82 VFVSVNTP   89 (480)
Q Consensus        82 Vii~Vptp   89 (480)
                      ||.|+|..
T Consensus       394 VInatP~g  401 (477)
T PRK09310        394 IINCLPPS  401 (477)
T ss_pred             EEEcCCCC
Confidence            99998753

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=96.98  E-value=0.0042  Score=61.95  Aligned_cols=109  Identities=17%  Similarity=0.241  Sum_probs=77.2

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      ++|+|+|+..          ....+++.|.+.|.+|.+||+.....+...+                      .+...+.
T Consensus         2 ~~Ig~IGlG~----------mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~----------------------~g~~~~~   49 (296)
T PRK15461          2 AAIAFIGLGQ----------MGSPMASNLLKQGHQLQVFDVNPQAVDALVD----------------------KGATPAA   49 (296)
T ss_pred             CeEEEEeeCH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------cCCcccC
Confidence            3799999866          8899999999999999999996544322211                      1234567


Q ss_pred             CHHHhcccccEEEEEecccc-ccccc--HHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011654          405 DAYQAAKDAHGVCILTEWDE-FKTLD--YQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSI  465 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~-~~~~~--~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i  465 (480)
                      ++.++++++|+|++++..+. .+..-  .+.+...+++..+|+|+..+.+..      .+.+.|+.|..-
T Consensus        50 s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~lda  119 (296)
T PRK15461         50 SPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDV  119 (296)
T ss_pred             CHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEc
Confidence            88899999999999998874 33321  123455566667999998887642      344568877543

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=96.97  E-value=0.0048  Score=62.22  Aligned_cols=100  Identities=14%  Similarity=0.247  Sum_probs=74.1

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHH-hCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLL-GDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~-~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      .+.+++|+|+|+.          +-...+++.|. .-|.+|.+|||....+.. ..+                      +
T Consensus       142 ~L~gktvGIiG~G----------~IG~~va~~l~~~fgm~V~~~~~~~~~~~~-~~~----------------------~  188 (323)
T PRK15409        142 DVHHKTLGIVGMG----------RIGMALAQRAHFGFNMPILYNARRHHKEAE-ERF----------------------N  188 (323)
T ss_pred             CCCCCEEEEEccc----------HHHHHHHHHHHhcCCCEEEEECCCCchhhH-Hhc----------------------C
Confidence            4689999999984          47788999997 889999999998654321 111                      2


Q ss_pred             eeeecCHHHhcccccEEEEEecccc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDE-FKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~-~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      ..+ .++++.++.+|+|+++.+... -+. ++. +..+.|++.+++|.+.+  ++|.+.+
T Consensus       189 ~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~-~~l~~mk~ga~lIN~aRG~vVde~AL  246 (323)
T PRK15409        189 ARY-CDLDTLLQESDFVCIILPLTDETHHLFGA-EQFAKMKSSAIFINAGRGPVVDENAL  246 (323)
T ss_pred             cEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH-HHHhcCCCCeEEEECCCccccCHHHH
Confidence            233 489999999999999988744 334 454 45678998889999854  6776544

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=96.97  E-value=0.0041  Score=60.65  Aligned_cols=90  Identities=14%  Similarity=0.079  Sum_probs=65.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR-IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .||+|||.|.-|.+-|.+|.+.  |.+|++=-+.... .+...+                   .++++ -+++++++.+|
T Consensus        19 K~iaIIGYGsQG~ahalNLRDS--GlnViiGlr~g~~s~~kA~~-------------------dGf~V-~~v~ea~k~AD   76 (338)
T COG0059          19 KKVAIIGYGSQGHAQALNLRDS--GLNVIIGLRKGSSSWKKAKE-------------------DGFKV-YTVEEAAKRAD   76 (338)
T ss_pred             CeEEEEecChHHHHHHhhhhhc--CCcEEEEecCCchhHHHHHh-------------------cCCEe-ecHHHHhhcCC
Confidence            5899999999999999999998  9997754332221 222222                   23543 46788999999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHH-HHHhhCCCCCEEEEecC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR-MIANVSNSNKIVVEKST  128 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~-~i~~~l~~~~iVi~~ST  128 (480)
                      +|++-+|.-.+               .++.+ .|.+.+++|..+.....
T Consensus        77 vim~L~PDe~q---------------~~vy~~~I~p~Lk~G~aL~FaHG  110 (338)
T COG0059          77 VVMILLPDEQQ---------------KEVYEKEIAPNLKEGAALGFAHG  110 (338)
T ss_pred             EEEEeCchhhH---------------HHHHHHHhhhhhcCCceEEeccc
Confidence            99999885322               34555 89999999998776544

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=96.96  E-value=0.0035  Score=62.89  Aligned_cols=97  Identities=19%  Similarity=0.214  Sum_probs=73.0

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.          +-...+++.|..-|.+|.+|||......                          ..+
T Consensus       142 ~L~gktvGIiG~G----------~IG~~vA~~~~~fgm~V~~~d~~~~~~~--------------------------~~~  185 (311)
T PRK08410        142 EIKGKKWGIIGLG----------TIGKRVAKIAQAFGAKVVYYSTSGKNKN--------------------------EEY  185 (311)
T ss_pred             ccCCCEEEEECCC----------HHHHHHHHHHhhcCCEEEEECCCccccc--------------------------cCc
Confidence            4689999999984          4678999999999999999999643210                          112


Q ss_pred             eeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      . ..++++.++.+|+|+++.+. ++-+. ++ .+..+.|++.+++|.+.+  ++|.+.+
T Consensus       186 ~-~~~l~ell~~sDvv~lh~Plt~~T~~li~-~~~~~~Mk~~a~lIN~aRG~vVDe~AL  242 (311)
T PRK08410        186 E-RVSLEELLKTSDIISIHAPLNEKTKNLIA-YKELKLLKDGAILINVGRGGIVNEKDL  242 (311)
T ss_pred             e-eecHHHHhhcCCEEEEeCCCCchhhcccC-HHHHHhCCCCeEEEECCCccccCHHHH
Confidence            2 24799999999999999987 44444 45 455678998889999754  7776544

>PRK08605 D-lactate dehydrogenase; Validated

Probab=96.93  E-value=0.0047  Score=62.57  Aligned_cols=93  Identities=18%  Similarity=0.236  Sum_probs=69.0

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHH-HhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L-~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      .+.+++|+|+|+.          +-+..+++.| ...|.+|.+|||......  .                       ..
T Consensus       143 ~l~g~~VgIIG~G----------~IG~~vA~~L~~~~g~~V~~~d~~~~~~~--~-----------------------~~  187 (332)
T PRK08605        143 SIKDLKVAVIGTG----------RIGLAVAKIFAKGYGSDVVAYDPFPNAKA--A-----------------------TY  187 (332)
T ss_pred             eeCCCEEEEECCC----------HHHHHHHHHHHhcCCCEEEEECCCccHhH--H-----------------------hh
Confidence            4688999999984          4778899998 567999999999865421  1                       11


Q ss_pred             eeeecCHHHhcccccEEEEEeccccccc-ccHHHHHHhcCCCCEEEEcCC
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDEFKT-LDYQKIFDNMRKPAYIFDGRN  448 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~~~~-~~~~~~~~~~~~~~~i~D~~~  448 (480)
                      +...++++++++++|+|+++++...... +--..+.+.|++.+++||+.+
T Consensus       188 ~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sR  237 (332)
T PRK08605        188 VDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCAR  237 (332)
T ss_pred             ccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCC
Confidence            2345689999999999999988755332 211456778998889999865

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=96.93  E-value=0.0069  Score=62.19  Aligned_cols=99  Identities=13%  Similarity=0.152  Sum_probs=73.1

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.          +-...+++.|..-|.+|.+|||......                          ..
T Consensus       112 ~~L~gktvGIIG~G----------~IG~~vA~~l~a~G~~V~~~dp~~~~~~--------------------------~~  155 (378)
T PRK15438        112 FSLHDRTVGIVGVG----------NVGRRLQARLEALGIKTLLCDPPRADRG--------------------------DE  155 (378)
T ss_pred             CCcCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCcccccc--------------------------cc
Confidence            46799999999984          4778999999999999999999643210                          00


Q ss_pred             eeeecCHHHhcccccEEEEEecccc------cccccHHHHHHhcCCCCEEEEcCC--CCChHHHh
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDE------FKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKLR  456 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~------~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~  456 (480)
                      . ...++++.++.+|+|+++++...      +.=++- +..+.|++.+++|++.+  ++|.+.+.
T Consensus       156 ~-~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~-~~l~~mk~gailIN~aRG~vVDe~AL~  218 (378)
T PRK15438        156 G-DFRSLDELVQEADILTFHTPLFKDGPYKTLHLADE-KLIRSLKPGAILINACRGAVVDNTALL  218 (378)
T ss_pred             c-ccCCHHHHHhhCCEEEEeCCCCCCcccccccccCH-HHHhcCCCCcEEEECCCchhcCHHHHH
Confidence            1 13578999999999999887632      222444 55678898889999865  77766543

>PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=96.92  E-value=0.036  Score=61.67  Aligned_cols=131  Identities=12%  Similarity=0.114  Sum_probs=85.8

Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCC----c
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNP----E  157 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P----e  157 (480)
                      ||+|+|.               +.+.+.++++.++++++++|.+-+++.....+.+.+.+...   ..-+|..+|    |
T Consensus         1 vila~Pv---------------~~~~~~~~~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~---~~~fvg~HPMaG~e   62 (673)
T PRK11861          1 VLLAAPV---------------AQTGPLLARIAPFLDASTIVTDAGSTKSDVVAAARAALGAR---IGQFVPGHPIAGRE   62 (673)
T ss_pred             CEEEcCH---------------HHHHHHHHHHhhhCCCCcEEEecCcccHHHHHHHHHhcccc---CCeEEecCCcCcCc
Confidence            6899873               34678899999999999999987666544444444443321   112566777    4


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChh-HHHHhhhHHhHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLW-SAELSKLAANAFLAQRISSVNAM  233 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl~~N~~~~~~ia~~nE~  233 (480)
                      ..+..++..+++....+++ ++.+.+++++++.+++++..++  ..+..++++ .-+++-++.-.-..+..++++.+
T Consensus        63 ~~G~~~a~~~Lf~~~~~il-~p~~~~~~~~~~~~~~l~~~~G--a~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~  136 (673)
T PRK11861         63 SSGVDAALADLYVGRNVVL-CALPENAPDALARVEAMWRAAR--ADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQI  136 (673)
T ss_pred             chhhhhhChhHhCCCeEEE-ecCCCCCHHHHHHHHHHHHHcC--CEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            4555566778887776665 4545557888999999999984  567777764 45555555555444445555444

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=96.91  E-value=0.0064  Score=64.58  Aligned_cols=120  Identities=14%  Similarity=0.144  Sum_probs=83.8

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      -.+|+++||.-          +...+++.|.++|++|.+||...+..+...+...              ..+. ..+..+
T Consensus         6 ~~~IG~IGLG~----------MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~--------------~~Ga-~~~~~a   60 (493)
T PLN02350          6 LSRIGLAGLAV----------MGQNLALNIAEKGFPISVYNRTTSKVDETVERAK--------------KEGN-LPLYGF   60 (493)
T ss_pred             CCCEEEEeeHH----------HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhh--------------hcCC-cccccC
Confidence            35799999965          8999999999999999999986554332221000              0000 112356


Q ss_pred             cCHHHhccc---ccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEecCC
Q 011654          404 WDAYQAAKD---AHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDV------EKLREIGFIVYSIGKP  468 (480)
Q Consensus       404 ~~~~~a~~~---ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG~~  468 (480)
                      +|+.++++.   +|+|+++...++--+--++.+...+.+..+|||+.+....      +.+++.|+.|.+.|..
T Consensus        61 ~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVS  134 (493)
T PLN02350         61 KDPEDFVLSIQKPRSVIILVKAGAPVDQTIKALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVS  134 (493)
T ss_pred             CCHHHHHhcCCCCCEEEEECCCcHHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCc
Confidence            788888876   9999999988763221224567777667799999999753      3455679999988764

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=96.91  E-value=0.0063  Score=60.04  Aligned_cols=91  Identities=22%  Similarity=0.294  Sum_probs=57.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHH-HHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIA-AWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~-~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--   77 (480)
                      +||+|||+|.||.-++..+.+. ++.++. ++|++++... ...+.                 .|.-...++.++.++  
T Consensus         2 lrVAIIG~G~IG~~h~~~ll~~-~~~elvaV~d~d~es~~la~A~~-----------------~Gi~~~~~~~e~ll~~~   63 (285)
T TIGR03215         2 VKVAIIGSGNIGTDLMYKLLRS-EHLEMVAMVGIDPESDGLARARE-----------------LGVKTSAEGVDGLLANP   63 (285)
T ss_pred             cEEEEEeCcHHHHHHHHHHHhC-CCcEEEEEEeCCcccHHHHHHHH-----------------CCCCEEECCHHHHhcCC
Confidence            6899999999999988777753 467766 5788886532 12211                 011123456666553  


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      +.|+||+|+|+..+.                  +.....+..|..|++++.
T Consensus        64 dIDaV~iaTp~~~H~------------------e~a~~al~aGk~VIdekP   96 (285)
T TIGR03215        64 DIDIVFDATSAKAHA------------------RHARLLAELGKIVIDLTP   96 (285)
T ss_pred             CCCEEEECCCcHHHH------------------HHHHHHHHcCCEEEECCc
Confidence            679999998865432                  122233456788887653

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.88  E-value=0.0068  Score=60.51  Aligned_cols=107  Identities=11%  Similarity=0.164  Sum_probs=76.6

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      +|+|+|+.-          ....+++.|.+.|.+|.+||+.....+....                      .+....++
T Consensus         2 ~Ig~IGlG~----------mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----------------------~g~~~~~s   49 (299)
T PRK12490          2 KLGLIGLGK----------MGGNMAERLREDGHEVVGYDVNQEAVDVAGK----------------------LGITARHS   49 (299)
T ss_pred             EEEEEcccH----------HHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----------------------CCCeecCC
Confidence            699999854          7899999999999999999986433221111                      12455678


Q ss_pred             HHHhccc---ccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011654          406 AYQAAKD---AHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSI  465 (480)
Q Consensus       406 ~~~a~~~---ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i  465 (480)
                      +++.+++   +|+|++++..+ ..+++ +..+...+++..+|||+.+.-+..      .+++.|+.|..-
T Consensus        50 ~~~~~~~~~~advVi~~vp~~~~~~~v-~~~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vda  118 (299)
T PRK12490         50 LEELVSKLEAPRTIWVMVPAGEVTESV-IKDLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDC  118 (299)
T ss_pred             HHHHHHhCCCCCEEEEEecCchHHHHH-HHHHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeC
Confidence            8888776   69999999998 45543 245666676667999998877643      233668888663

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=96.86  E-value=0.0046  Score=61.03  Aligned_cols=73  Identities=14%  Similarity=0.191  Sum_probs=53.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .++.|+|+|.+|.+++..|+..  | .+|++++|+.++.+.+.+.....              ..+.+..+..+.+.++|
T Consensus       124 k~vlVlGaGg~a~ai~~aL~~~--g~~~V~v~~R~~~~a~~l~~~~~~~--------------~~~~~~~~~~~~~~~~D  187 (278)
T PRK00258        124 KRILILGAGGAARAVILPLLDL--GVAEITIVNRTVERAEELAKLFGAL--------------GKAELDLELQEELADFD  187 (278)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhhhc--------------cceeecccchhccccCC
Confidence            4789999999999999999987  7 79999999999888776421000              00122112334568899


Q ss_pred             EEEEeccCCC
Q 011654           81 IVFVSVNTPT   90 (480)
Q Consensus        81 vVii~Vptp~   90 (480)
                      +||-|+|...
T Consensus       188 ivInaTp~g~  197 (278)
T PRK00258        188 LIINATSAGM  197 (278)
T ss_pred             EEEECCcCCC
Confidence            9999988654

>KOG1495 consensus Lactate dehydrogenase [Energy production and conversion]

Probab=96.86  E-value=0.0059  Score=58.55  Aligned_cols=78  Identities=22%  Similarity=0.257  Sum_probs=55.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH---CCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN---GDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~---~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      .||.|+|.|.+|.+.|..+..++.-.++.++|.++++.+.-.   +...+|           ....++....|+.. -++
T Consensus        21 ~KItVVG~G~VGmAca~siL~k~Ladel~lvDv~~dklkGE~MDLqH~s~f-----------~~~~~V~~~~Dy~~-sa~   88 (332)
T KOG1495|consen   21 NKITVVGVGQVGMACAISILLKGLADELVLVDVNEDKLKGEMMDLQHGSAF-----------LSTPNVVASKDYSV-SAN   88 (332)
T ss_pred             ceEEEEccchHHHHHHHHHHHhhhhhceEEEecCcchhhhhhhhhcccccc-----------ccCCceEecCcccc-cCC
Confidence            489999999999999998887633468999999998654211   111111           12356777778764 689


Q ss_pred             CcEEEEeccCCCC
Q 011654           79 ADIVFVSVNTPTK   91 (480)
Q Consensus        79 aDvVii~Vptp~~   91 (480)
                      ++++|++......
T Consensus        89 S~lvIiTAGarq~  101 (332)
T KOG1495|consen   89 SKLVIITAGARQS  101 (332)
T ss_pred             CcEEEEecCCCCC
Confidence            9999999876543

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=96.84  E-value=0.0063  Score=60.50  Aligned_cols=96  Identities=15%  Similarity=0.162  Sum_probs=68.0

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      .+|+|+|+..          ....+++.|.+.|.+|.+||+.....+....                      .+....+
T Consensus         3 ~~IgviG~G~----------mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~----------------------~g~~~~~   50 (296)
T PRK11559          3 MKVGFIGLGI----------MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIA----------------------AGAETAS   50 (296)
T ss_pred             ceEEEEccCH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCeecC
Confidence            3799999865          7789999999999999999996543222111                      1234567


Q ss_pred             CHHHhcccccEEEEEecccc-ccccc--HHHHHHhcCCCCEEEEcCCCCCh
Q 011654          405 DAYQAAKDAHGVCILTEWDE-FKTLD--YQKIFDNMRKPAYIFDGRNILDV  452 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~-~~~~~--~~~~~~~~~~~~~i~D~~~~~~~  452 (480)
                      +++++++++|+|++++.-+. .+.+-  .+.+...+++..+|+|+..+...
T Consensus        51 ~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~  101 (296)
T PRK11559         51 TAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPL  101 (296)
T ss_pred             CHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHH
Confidence            88999999999999987543 22211  12355566666799999888753

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=96.84  E-value=0.0049  Score=61.45  Aligned_cols=94  Identities=13%  Similarity=0.190  Sum_probs=67.8

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+++++|+|+|+          .|....+++.|...|.+|.+||+.....+....                      .++
T Consensus        13 ~LkgKtVGIIG~----------GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~----------------------~G~   60 (335)
T PRK13403         13 LLQGKTVAVIGY----------GSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKA----------------------DGF   60 (335)
T ss_pred             hhCcCEEEEEeE----------cHHHHHHHHHHHHCcCEEEEEECcchhhHHHHH----------------------cCC
Confidence            468999999998          468999999999999999999754333222211                      123


Q ss_pred             eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                      .. .++.++++.||+|+++.+.++-+++=...+...|++.++++=+.
T Consensus        61 ~v-~sl~Eaak~ADVV~llLPd~~t~~V~~~eil~~MK~GaiL~f~h  106 (335)
T PRK13403         61 EV-MSVSEAVRTAQVVQMLLPDEQQAHVYKAEVEENLREGQMLLFSH  106 (335)
T ss_pred             EE-CCHHHHHhcCCEEEEeCCChHHHHHHHHHHHhcCCCCCEEEECC
Confidence            33 38999999999999999876544432256788888776664433

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.84  E-value=0.0008  Score=69.62  Aligned_cols=120  Identities=15%  Similarity=0.174  Sum_probs=68.8

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE----ecC---HHHH
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF----STD---IEKH   75 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~----t~d---~~~a   75 (480)
                      |.|+|+|.+|..++..|++.. .+ +|++.|++.++.+++.+...               ..++..    .+|   +++.
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~-~~~~v~va~r~~~~~~~~~~~~~---------------~~~~~~~~~d~~~~~~l~~~   64 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRG-PFEEVTVADRNPEKAERLAEKLL---------------GDRVEAVQVDVNDPESLAEL   64 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTT-CE-EEEEEESSHHHHHHHHT--T---------------TTTEEEEE--TTTHHHHHHH
T ss_pred             CEEEcCcHHHHHHHHHHhcCC-CCCcEEEEECCHHHHHHHHhhcc---------------ccceeEEEEecCCHHHHHHH
Confidence            789999999999999999873 35 89999999999998875310               011111    122   4556


Q ss_pred             hccCcEEEEeccCCCCcCCCC-----CCCCCChHHHHHHHHHHHhhC-CCCCEEEEecCCccchHHHHHH
Q 011654           76 VAEADIVFVSVNTPTKTQGLG-----AGKAADLTYWESAARMIANVS-NSNKIVVEKSTVPVKTAEAIEK  139 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~-----~~~~~d~~~v~~~~~~i~~~l-~~~~iVi~~STv~~gt~~~l~~  139 (480)
                      ++++|+||-|+|...+..-+.     +....|.+++......+.+.. +.+..++......||.+..+..
T Consensus        65 ~~~~dvVin~~gp~~~~~v~~~~i~~g~~yvD~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~a~  134 (386)
T PF03435_consen   65 LRGCDVVINCAGPFFGEPVARACIEAGVHYVDTSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLLAR  134 (386)
T ss_dssp             HTTSSEEEE-SSGGGHHHHHHHHHHHT-EEEESS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHHHH
T ss_pred             HhcCCEEEECCccchhHHHHHHHHHhCCCeeccchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHHHH
Confidence            789999999997432110000     011233333222233332222 3577778777888888776543

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.84  E-value=0.024  Score=59.91  Aligned_cols=117  Identities=20%  Similarity=0.202  Sum_probs=68.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH-HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV-SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~-~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|.|+|.|.+|.++|..|++.  |++|+++|++. +.++...+           ++...  .-.+.......+...++|
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~-----------~l~~~--~~~~~~~~~~~~~~~~~d   70 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKL--GAKVILTDEKEEDQLKEALE-----------ELGEL--GIELVLGEYPEEFLEGVD   70 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCchHHHHHHHH-----------HHHhc--CCEEEeCCcchhHhhcCC
Confidence            4799999999999999999998  99999999985 22221110           01000  001211122223356799


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHH----------HHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------MIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS  145 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~  145 (480)
                      +||.+...+.           +-..+..+-+          .+....+ ..+|.+..|..-.||.. +..+|+..+
T Consensus        71 ~vv~~~g~~~-----------~~~~~~~a~~~~i~~~~~~~~~~~~~~-~~vI~ITGS~GKTTt~~~l~~iL~~~g  134 (450)
T PRK14106         71 LVVVSPGVPL-----------DSPPVVQAHKKGIEVIGEVELAYRFSK-APIVAITGTNGKTTTTTLLGEIFKNAG  134 (450)
T ss_pred             EEEECCCCCC-----------CCHHHHHHHHCCCcEEeHHHHHHhhcC-CCEEEEeCCCchHHHHHHHHHHHHHcC
Confidence            9999865432           1122222211          1122223 56777777776666665 567777643

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.83  E-value=0.013  Score=51.52  Aligned_cols=79  Identities=18%  Similarity=0.059  Sum_probs=61.3

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+-++++++|.|+|-+.         .-..+++..|.++|+.|.+.+-..                              
T Consensus        22 ~~~~~~gk~v~VvGrs~---------~vG~pla~lL~~~gatV~~~~~~t------------------------------   62 (140)
T cd05212          22 EGVRLDGKKVLVVGRSG---------IVGAPLQCLLQRDGATVYSCDWKT------------------------------   62 (140)
T ss_pred             cCCCCCCCEEEEECCCc---------hHHHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence            44578999999999644         678899999999999999877432                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            .++++++++||+||.+|..+.+  ++.+++    ++..+|+|.-
T Consensus        63 ------~~l~~~v~~ADIVvsAtg~~~~--i~~~~i----kpGa~Vidvg  100 (140)
T cd05212          63 ------IQLQSKVHDADVVVVGSPKPEK--VPTEWI----KPGATVINCS  100 (140)
T ss_pred             ------cCHHHHHhhCCEEEEecCCCCc--cCHHHc----CCCCEEEEcC
Confidence                  1467789999999999999964  555554    4556787764

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=96.83  E-value=0.0049  Score=61.08  Aligned_cols=75  Identities=17%  Similarity=0.236  Sum_probs=53.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|.|||+|-+|.+++..|+..  |. +|+++||+.++.+.+.+...           .......+....+..+.+.++|
T Consensus       128 k~vlIlGaGGaaraia~aL~~~--G~~~I~I~nR~~~ka~~la~~l~-----------~~~~~~~~~~~~~~~~~~~~aD  194 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTL--GVERLTIFDVDPARAAALADELN-----------ARFPAARATAGSDLAAALAAAD  194 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHHH-----------hhCCCeEEEeccchHhhhCCCC
Confidence            4799999999999999999987  65 79999999999888764210           0000001222234444578899


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||-|+|..
T Consensus       195 iVInaTp~G  203 (284)
T PRK12549        195 GLVHATPTG  203 (284)
T ss_pred             EEEECCcCC
Confidence            999997754

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=96.82  E-value=0.0094  Score=59.55  Aligned_cols=108  Identities=13%  Similarity=0.138  Sum_probs=77.0

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      +|+|+|+.-          ....+++.|.+.|.+|.+||+.-...+...+                      .+....++
T Consensus         2 ~Ig~IGlG~----------MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~----------------------~g~~~~~~   49 (301)
T PRK09599          2 QLGMIGLGR----------MGGNMARRLLRGGHEVVGYDRNPEAVEALAE----------------------EGATGADS   49 (301)
T ss_pred             EEEEEcccH----------HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH----------------------CCCeecCC
Confidence            799999854          8899999999999999999997543222221                      23455677


Q ss_pred             HHHhccc---ccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEec
Q 011654          406 AYQAAKD---AHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNILDV------EKLREIGFIVYSIG  466 (480)
Q Consensus       406 ~~~a~~~---ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG  466 (480)
                      +.+.++.   +|+|++++..+ ..++. +..+...+++..+|||+.+....      +.+++.|+.|...+
T Consensus        50 ~~e~~~~~~~~dvvi~~v~~~~~~~~v-~~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dap  119 (301)
T PRK09599         50 LEELVAKLPAPRVVWLMVPAGEITDAT-IDELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVG  119 (301)
T ss_pred             HHHHHhhcCCCCEEEEEecCCcHHHHH-HHHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCC
Confidence            8887765   69999999887 44442 34566667666799999887753      23456788887654

>PRK06436 glycerate dehydrogenase; Provisional

Probab=96.81  E-value=0.0045  Score=61.80  Aligned_cols=97  Identities=18%  Similarity=0.205  Sum_probs=71.8

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.          +-...+++.|...|.+|.+|||.......                           .
T Consensus       119 ~L~gktvgIiG~G----------~IG~~vA~~l~afG~~V~~~~r~~~~~~~---------------------------~  161 (303)
T PRK06436        119 LLYNKSLGILGYG----------GIGRRVALLAKAFGMNIYAYTRSYVNDGI---------------------------S  161 (303)
T ss_pred             CCCCCEEEEECcC----------HHHHHHHHHHHHCCCEEEEECCCCcccCc---------------------------c
Confidence            5789999999984          47889999998889999999997432100                           0


Q ss_pred             eeecCHHHhcccccEEEEEeccc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWD-EFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~-~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      ....++++.++.+|+|+++.+.. +-++ ++ ....+.|++.+++|++.+  ++|.+.+
T Consensus       162 ~~~~~l~ell~~aDiv~~~lp~t~~T~~li~-~~~l~~mk~ga~lIN~sRG~~vd~~aL  219 (303)
T PRK06436        162 SIYMEPEDIMKKSDFVLISLPLTDETRGMIN-SKMLSLFRKGLAIINVARADVVDKNDM  219 (303)
T ss_pred             cccCCHHHHHhhCCEEEECCCCCchhhcCcC-HHHHhcCCCCeEEEECCCccccCHHHH
Confidence            11357899999999999998874 3344 34 556678998889999855  5665443

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=96.81  E-value=0.013  Score=60.27  Aligned_cols=100  Identities=15%  Similarity=0.210  Sum_probs=72.8

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +..+.+++|+|+|+.          .-+..+++.|...|.+|.+|||......                          .
T Consensus       111 g~~l~gktvGIIG~G----------~IG~~va~~l~a~G~~V~~~Dp~~~~~~--------------------------~  154 (381)
T PRK00257        111 GVDLAERTYGVVGAG----------HVGGRLVRVLRGLGWKVLVCDPPRQEAE--------------------------G  154 (381)
T ss_pred             CCCcCcCEEEEECCC----------HHHHHHHHHHHHCCCEEEEECCcccccc--------------------------c
Confidence            346789999999984          3678899999999999999999532110                          0


Q ss_pred             ceeeecCHHHhcccccEEEEEeccc------ccccccHHHHHHhcCCCCEEEEcCC--CCChHHHh
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWD------EFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKLR  456 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~------~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~  456 (480)
                      ... ..++++.++++|+|+++++..      .+.=++- +..+.|++.+++|++.+  ++|.+.+.
T Consensus       155 ~~~-~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~-~~l~~mk~gailIN~aRG~vVde~AL~  218 (381)
T PRK00257        155 DGD-FVSLERILEECDVISLHTPLTKEGEHPTRHLLDE-AFLASLRPGAWLINASRGAVVDNQALR  218 (381)
T ss_pred             Ccc-ccCHHHHHhhCCEEEEeCcCCCCccccccccCCH-HHHhcCCCCeEEEECCCCcccCHHHHH
Confidence            111 247899999999999999873      2333454 45678888889999754  66765543

>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]

Probab=96.79  E-value=0.0043  Score=61.92  Aligned_cols=76  Identities=30%  Similarity=0.503  Sum_probs=46.5

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec-CHHHH-hc
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST-DIEKH-VA   77 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~-d~~~a-~~   77 (480)
                      |+||+|||. ||-|.-+...|+.+ |..++..+..+..+=+.+.+-     .|.+..+.      .+++.. |.++. ..
T Consensus         2 ~~kV~IvGasGYtG~EL~rlL~~H-p~ve~~~~ss~~~~g~~~~~~-----~p~l~g~~------~l~~~~~~~~~~~~~   69 (349)
T COG0002           2 MIKVGIVGASGYTGLELLRLLAGH-PDVELILISSRERAGKPVSDV-----HPNLRGLV------DLPFQTIDPEKIELD   69 (349)
T ss_pred             CceEEEEcCCCCcHHHHHHHHhcC-CCeEEEEeechhhcCCchHHh-----Cccccccc------ccccccCChhhhhcc
Confidence            689999995 99999999999987 678877777654322222221     11111100      122222 23332 45


Q ss_pred             cCcEEEEeccC
Q 011654           78 EADIVFVSVNT   88 (480)
Q Consensus        78 ~aDvVii~Vpt   88 (480)
                      +||+||+|+|.
T Consensus        70 ~~DvvFlalPh   80 (349)
T COG0002          70 ECDVVFLALPH   80 (349)
T ss_pred             cCCEEEEecCc
Confidence            69999999884

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.76  E-value=0.0045  Score=60.82  Aligned_cols=71  Identities=20%  Similarity=0.350  Sum_probs=54.6

Q ss_pred             cEEEEEcCChh-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYV-GGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~-G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|||.|.+ |.|+|..|.++  |..|+++...                                 |.++.+.+++||
T Consensus       159 k~vvViGrs~iVGkPla~lL~~~--~atVt~~hs~---------------------------------t~~l~~~~~~AD  203 (285)
T PRK14189        159 AHAVVIGRSNIVGKPMAMLLLQA--GATVTICHSK---------------------------------TRDLAAHTRQAD  203 (285)
T ss_pred             CEEEEECCCCccHHHHHHHHHHC--CCEEEEecCC---------------------------------CCCHHHHhhhCC
Confidence            47999999887 99999999988  8999986531                                 235566689999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +||.++|+|--              +.      ...+++|.+||+.+
T Consensus       204 IVV~avG~~~~--------------i~------~~~ik~gavVIDVG  230 (285)
T PRK14189        204 IVVAAVGKRNV--------------LT------ADMVKPGATVIDVG  230 (285)
T ss_pred             EEEEcCCCcCc--------------cC------HHHcCCCCEEEEcc
Confidence            99999997621              11      15678999998644

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=96.76  E-value=0.006  Score=63.92  Aligned_cols=77  Identities=21%  Similarity=0.306  Sum_probs=53.1

Q ss_pred             cEEEEEcCChhHHH--HHHHHHHc---CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHH
Q 011654            2 VKICCIGAGYVGGP--TMAVIALK---CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKH   75 (480)
Q Consensus         2 mkI~VIGlG~~G~~--lA~~La~~---~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a   75 (480)
                      |||+|||+|.. .+  +...|+..   .++-+|+++|+|+++.+.+.+-        ...+..+. ..-+++.|+|.++|
T Consensus         1 ~KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~rl~~v~~l--------~~~~~~~~g~~~~v~~Ttdr~eA   71 (437)
T cd05298           1 FKIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAERQEKVAEA--------VKILFKENYPEIKFVYTTDPEEA   71 (437)
T ss_pred             CeEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEECCHHHH
Confidence            89999999986 32  33344432   3567999999999988764420        11112111 12357899999999


Q ss_pred             hccCcEEEEecc
Q 011654           76 VAEADIVFVSVN   87 (480)
Q Consensus        76 ~~~aDvVii~Vp   87 (480)
                      +++||+||.++-
T Consensus        72 l~gADfVi~~ir   83 (437)
T cd05298          72 FTDADFVFAQIR   83 (437)
T ss_pred             hCCCCEEEEEee
Confidence            999999999975

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.74  E-value=0.0099  Score=62.26  Aligned_cols=112  Identities=16%  Similarity=0.192  Sum_probs=67.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+|.|||+|.+|.++|..|.+.  |++|+++|++++......             ...    .  ....+.+....++|+
T Consensus         4 ~~i~iiGlG~~G~slA~~l~~~--G~~V~g~D~~~~~~~~~~-------------~~~----~--~~~~~~~~~~~~~dl   62 (418)
T PRK00683          4 QRVVVLGLGVTGKSIARFLAQK--GVYVIGVDKSLEALQSCP-------------YIH----E--RYLENAEEFPEQVDL   62 (418)
T ss_pred             CeEEEEEECHHHHHHHHHHHHC--CCEEEEEeCCccccchhH-------------HHh----h--hhcCCcHHHhcCCCE
Confidence            5799999999999999999988  899999998765332110             000    0  011222333467999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHH-------H--HH-hh--CCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR-------M--IA-NV--SNSNKIVVEKSTVPVKTAEA-IEKILTHNS  145 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~-------~--i~-~~--l~~~~iVi~~STv~~gt~~~-l~~~l~~~~  145 (480)
                      ||.+.+.+.           +...++++.+       .  ++ ..  .....+|-+..|..-+||.. +..+|+..+
T Consensus        63 vV~s~gi~~-----------~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~~g  128 (418)
T PRK00683         63 VVRSPGIKK-----------EHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKRLG  128 (418)
T ss_pred             EEECCCCCC-----------CcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHHcC
Confidence            988866542           1123333332       0  11 11  11345677777776666665 677887643

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=96.73  E-value=0.0037  Score=65.15  Aligned_cols=71  Identities=14%  Similarity=0.265  Sum_probs=54.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .||.|||+|-||..++..|+..  | .++++++|+.++.+.+.+...               .......++..+.+.++|
T Consensus       182 kkvlviGaG~~a~~va~~L~~~--g~~~I~V~nRt~~ra~~La~~~~---------------~~~~~~~~~l~~~l~~aD  244 (414)
T PRK13940        182 KNVLIIGAGQTGELLFRHVTAL--APKQIMLANRTIEKAQKITSAFR---------------NASAHYLSELPQLIKKAD  244 (414)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHc--CCCEEEEECCCHHHHHHHHHHhc---------------CCeEecHHHHHHHhccCC
Confidence            4799999999999999999987  6 579999999999888775310               011222244556688999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||.|++.|
T Consensus       245 iVI~aT~a~  253 (414)
T PRK13940        245 IIIAAVNVL  253 (414)
T ss_pred             EEEECcCCC
Confidence            999998876

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.73  E-value=0.0098  Score=58.48  Aligned_cols=79  Identities=15%  Similarity=0.193  Sum_probs=61.6

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+-++.+++|+|+|.|-         ....+++..|.++|+.|.++....                              
T Consensus       152 ~~i~l~Gk~v~vIG~S~---------ivG~Pla~lL~~~gatVtv~~s~t------------------------------  192 (284)
T PRK14179        152 YNVELEGKHAVVIGRSN---------IVGKPMAQLLLDKNATVTLTHSRT------------------------------  192 (284)
T ss_pred             hCCCCCCCEEEEECCCC---------cCcHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence            34468999999999643         578899999999999999983221                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            .++.+.+++||+||.++..+.|-.-+  .    +++.++|||.-
T Consensus       193 ------~~l~~~~~~ADIVI~avg~~~~v~~~--~----ik~GavVIDvg  230 (284)
T PRK14179        193 ------RNLAEVARKADILVVAIGRGHFVTKE--F----VKEGAVVIDVG  230 (284)
T ss_pred             ------CCHHHHHhhCCEEEEecCccccCCHH--H----ccCCcEEEEec
Confidence                  25677889999999999999984422  2    45567999975

>PLN03075 nicotianamine synthase; Provisional

Probab=96.72  E-value=0.012  Score=58.14  Aligned_cols=133  Identities=15%  Similarity=0.210  Sum_probs=80.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHH---hc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKH---VA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a---~~   77 (480)
                      .+|..||+|..|.+....++...|+-.++++|++++.++..++--..  .+++.        .+++|. .|..+.   ..
T Consensus       125 ~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~--~~gL~--------~rV~F~~~Da~~~~~~l~  194 (296)
T PLN03075        125 TKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS--DPDLS--------KRMFFHTADVMDVTESLK  194 (296)
T ss_pred             CEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh--ccCcc--------CCcEEEECchhhcccccC
Confidence            47999999999997666665555677899999999988876642100  11221        234442 232221   36


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC-CCCceeEeeCC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS-REIKYQILSNP  156 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~-~g~~~~v~~~P  156 (480)
                      +.|+||+.+=-..           |-..-..+++.+.+.+++|.+++..|  .-|....+.+.+.... .|.+.....+|
T Consensus       195 ~FDlVF~~ALi~~-----------dk~~k~~vL~~l~~~LkPGG~Lvlr~--~~G~r~~LYp~v~~~~~~gf~~~~~~~P  261 (296)
T PLN03075        195 EYDVVFLAALVGM-----------DKEEKVKVIEHLGKHMAPGALLMLRS--AHGARAFLYPVVDPCDLRGFEVLSVFHP  261 (296)
T ss_pred             CcCEEEEeccccc-----------ccccHHHHHHHHHHhcCCCcEEEEec--ccchHhhcCCCCChhhCCCeEEEEEECC
Confidence            8899999952111           11123678999999999999998876  2343333444332211 13344455667


Q ss_pred             c
Q 011654          157 E  157 (480)
Q Consensus       157 e  157 (480)
                      +
T Consensus       262 ~  262 (296)
T PLN03075        262 T  262 (296)
T ss_pred             C
Confidence            4

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=96.70  E-value=0.0065  Score=60.47  Aligned_cols=106  Identities=14%  Similarity=0.109  Sum_probs=73.2

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      +|+|+|+..          ....+++.|.+.|.+|.+||.....+.. ..                      .+.....+
T Consensus         2 ~Ig~IGlG~----------MG~~ma~~L~~~G~~v~v~~~~~~~~~~-~~----------------------~g~~~~~s   48 (292)
T PRK15059          2 KLGFIGLGI----------MGTPMAINLARAGHQLHVTTIGPVADEL-LS----------------------LGAVSVET   48 (292)
T ss_pred             eEEEEccCH----------HHHHHHHHHHHCCCeEEEEeCCHhHHHH-HH----------------------cCCeecCC
Confidence            699999865          8899999999999999999875332221 11                      12345678


Q ss_pred             HHHhcccccEEEEEecccc-cccc--cHHHHHHhcCCCCEEEEcCCCCCh------HHHhhcCcEEEE
Q 011654          406 AYQAAKDAHGVCILTEWDE-FKTL--DYQKIFDNMRKPAYIFDGRNILDV------EKLREIGFIVYS  464 (480)
Q Consensus       406 ~~~a~~~ad~vvi~t~h~~-~~~~--~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~  464 (480)
                      +.++++++|+|++++..+. .++.  ....+...+.+..+|||+..+-+.      +.+++.|..|..
T Consensus        49 ~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vd  116 (292)
T PRK15059         49 ARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGDYLD  116 (292)
T ss_pred             HHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEE
Confidence            8899999999999999863 2221  111233444556699999887764      344566777755

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=96.69  E-value=0.012  Score=58.67  Aligned_cols=114  Identities=13%  Similarity=0.220  Sum_probs=78.1

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      +|+|+|+.-          ....+++.|.+.|.+|.+||......+...+.                      ......+
T Consensus         2 ~Ig~IGlG~----------mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~----------------------g~~~~~s   49 (298)
T TIGR00872         2 QLGLIGLGR----------MGANIVRRLAKRGHDCVGYDHDQDAVKAMKED----------------------RTTGVAN   49 (298)
T ss_pred             EEEEEcchH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----------------------CCcccCC
Confidence            699999844          88899999999999999999875443222211                      1112234


Q ss_pred             HHH---hcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecCCCCcC
Q 011654          406 AYQ---AAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIGKPLDPW  472 (480)
Q Consensus       406 ~~~---a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~~~~~~  472 (480)
                      +.+   .++.+|+|+++++....+++ .+.+...+++..+|||+.+.....      .+++.|+.|..-+...-++
T Consensus        50 ~~~~~~~~~~~dvIi~~vp~~~~~~v-~~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~  124 (298)
T TIGR00872        50 LRELSQRLSAPRVVWVMVPHGIVDAV-LEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVW  124 (298)
T ss_pred             HHHHHhhcCCCCEEEEEcCchHHHHH-HHHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            444   45678999999999855543 356667776667999999987533      3336689998877544333

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=96.69  E-value=0.0053  Score=61.62  Aligned_cols=101  Identities=12%  Similarity=0.040  Sum_probs=72.9

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.          +-...+++.|...|.+|.+|||......   ..                     ...
T Consensus       133 ~l~g~tvgIvG~G----------~IG~~vA~~l~afG~~V~~~~~~~~~~~---~~---------------------~~~  178 (312)
T PRK15469        133 HREDFTIGILGAG----------VLGSKVAQSLQTWGFPLRCWSRSRKSWP---GV---------------------QSF  178 (312)
T ss_pred             CcCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEEeCCCCCCC---Cc---------------------eee
Confidence            5688999999984          4788999999999999999998643210   00                     001


Q ss_pred             eeecCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      ....+++++++++|+|+++.+... -+.+=-....+.|++.+++|++-+  ++|.+.+
T Consensus       179 ~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL  236 (312)
T PRK15469        179 AGREELSAFLSQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDL  236 (312)
T ss_pred             cccccHHHHHhcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHH
Confidence            113578999999999999988744 333322456778998889999754  6676544

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=96.68  E-value=0.0031  Score=69.06  Aligned_cols=72  Identities=14%  Similarity=0.327  Sum_probs=53.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCC--CCChHHHHHhhcCCCEEEecCHHH-Hhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIY--EPGLEDVVTQCRGRNLFFSTDIEK-HVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~l~~~~~~~~l~~t~d~~~-a~~~   78 (480)
                      ++|.|+|.|.+|..+|..|.++  |++++++|.|+++++.+++...+..  +..-.+.              +++ -+++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~--------------L~~agi~~  464 (601)
T PRK03659        401 PQVIIVGFGRFGQVIGRLLMAN--KMRITVLERDISAVNLMRKYGYKVYYGDATQLEL--------------LRAAGAEK  464 (601)
T ss_pred             CCEEEecCchHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHH--------------HHhcCCcc
Confidence            4689999999999999999988  9999999999999999886433222  1111111              111 1568


Q ss_pred             CcEEEEeccCC
Q 011654           79 ADIVFVSVNTP   89 (480)
Q Consensus        79 aDvVii~Vptp   89 (480)
                      ||.++++++++
T Consensus       465 A~~vv~~~~d~  475 (601)
T PRK03659        465 AEAIVITCNEP  475 (601)
T ss_pred             CCEEEEEeCCH
Confidence            99999998753

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=96.68  E-value=0.005  Score=56.03  Aligned_cols=53  Identities=28%  Similarity=0.533  Sum_probs=43.5

Q ss_pred             cEEEEEcCChh-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYV-GGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~-G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|.|||.|.| |.++|..|.++  |.+|++.+++.+                                 ++.+.+.++|
T Consensus        45 k~vlViG~G~~~G~~~a~~L~~~--g~~V~v~~r~~~---------------------------------~l~~~l~~aD   89 (168)
T cd01080          45 KKVVVVGRSNIVGKPLAALLLNR--NATVTVCHSKTK---------------------------------NLKEHTKQAD   89 (168)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhC--CCEEEEEECCch---------------------------------hHHHHHhhCC
Confidence            47999999986 99999999988  889999997531                                 2334578999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||.|++.|
T Consensus        90 iVIsat~~~   98 (168)
T cd01080          90 IVIVAVGKP   98 (168)
T ss_pred             EEEEcCCCC
Confidence            999998865

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK06199 ornithine cyclodeaminase; Validated

Probab=96.68  E-value=0.01  Score=61.22  Aligned_cols=76  Identities=17%  Similarity=0.205  Sum_probs=57.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCC-CCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCC-CEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCP-KIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGR-NLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~-G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~-~l~~t~d~~~a~~~a   79 (480)
                      .+++|||+|..+......++.-.+ -.+|.+|++++++.+.+.+..           -...... .+..+++.++++++|
T Consensus       156 ~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~-----------~~~~~~~~~v~~~~s~~eav~~A  224 (379)
T PRK06199        156 KVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWV-----------AETYPQITNVEVVDSIEEVVRGS  224 (379)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHH-----------HHhcCCCceEEEeCCHHHHHcCC
Confidence            468999999999999998887433 358999999999988876421           0000001 267789999999999


Q ss_pred             cEEEEeccC
Q 011654           80 DIVFVSVNT   88 (480)
Q Consensus        80 DvVii~Vpt   88 (480)
                      |+|+.|+++
T Consensus       225 DIVvtaT~s  233 (379)
T PRK06199        225 DIVTYCNSG  233 (379)
T ss_pred             CEEEEccCC
Confidence            999999864

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.67  E-value=0.012  Score=57.55  Aligned_cols=105  Identities=18%  Similarity=0.212  Sum_probs=55.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh--hcCCCEEEe-cCHHH---H
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ--CRGRNLFFS-TDIEK---H   75 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~--~~~~~l~~t-~d~~~---a   75 (480)
                      .||++||.|.+-++.-......+++..|.++|+|++.++.-++            ++..  ....++++. .|..+   .
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~------------lv~~~~~L~~~m~f~~~d~~~~~~d  189 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARR------------LVASDLGLSKRMSFITADVLDVTYD  189 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHH------------HHH---HH-SSEEEEES-GGGG-GG
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHH------------HHhhcccccCCeEEEecchhccccc
Confidence            3899999999988654433333345679999999998775542            1110  012345543 34322   2


Q ss_pred             hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654           76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv  129 (480)
                      +.++|+|+++---..           +-..-.++++.+.+++++|++|+.+|.-
T Consensus       190 l~~~DvV~lAalVg~-----------~~e~K~~Il~~l~~~m~~ga~l~~Rsa~  232 (276)
T PF03059_consen  190 LKEYDVVFLAALVGM-----------DAEPKEEILEHLAKHMAPGARLVVRSAH  232 (276)
T ss_dssp             ----SEEEE-TT-S---------------SHHHHHHHHHHHS-TTSEEEEEE--
T ss_pred             cccCCEEEEhhhccc-----------ccchHHHHHHHHHhhCCCCcEEEEecch
Confidence            568899999954321           2223478999999999999999999754

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4

Probab=96.67  E-value=0.0074  Score=63.12  Aligned_cols=79  Identities=23%  Similarity=0.246  Sum_probs=53.5

Q ss_pred             cEEEEEcCChh-HHHHHHHHHHc---CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGYV-GGPTMAVIALK---CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~-G~~lA~~La~~---~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~   76 (480)
                      |||+|||.|.. ...+...|++.   .++.+|+++|+|+++.+.+.+-        ...+..+. ..-+++.|+|.++|+
T Consensus         1 ~KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~~v~~l--------~~~~~~~~g~~~~v~~ttD~~~Al   72 (425)
T cd05197           1 VKIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLDIILTI--------AKRYVEEVGADIKFEKTMDLEDAI   72 (425)
T ss_pred             CEEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHHHHHHH--------HHHHHHhhCCCeEEEEeCCHHHHh
Confidence            79999999985 22233444432   3567999999999888764320        11122211 123578999999999


Q ss_pred             ccCcEEEEeccC
Q 011654           77 AEADIVFVSVNT   88 (480)
Q Consensus        77 ~~aDvVii~Vpt   88 (480)
                      ++||+||.++-.
T Consensus        73 ~gADfVi~~irv   84 (425)
T cd05197          73 IDADFVINQFRV   84 (425)
T ss_pred             CCCCEEEEeeec
Confidence            999999999753

Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=96.67  E-value=0.0075  Score=62.86  Aligned_cols=99  Identities=14%  Similarity=0.148  Sum_probs=73.7

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.          +-+..+++.|..-|.+|.+|||.....                          ....
T Consensus       148 ~L~gktvGIiG~G----------~IG~~vA~~~~~fGm~V~~~d~~~~~~--------------------------~~~~  191 (409)
T PRK11790        148 EVRGKTLGIVGYG----------HIGTQLSVLAESLGMRVYFYDIEDKLP--------------------------LGNA  191 (409)
T ss_pred             cCCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEECCCcccc--------------------------cCCc
Confidence            5789999999984          467899999999999999999963210                          0123


Q ss_pred             eeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      .+..++++.++.+|+|+++.+.. +-+.+==.+..+.|++.+++|.+.+  ++|.+.+
T Consensus       192 ~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL  249 (409)
T PRK11790        192 RQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDIDAL  249 (409)
T ss_pred             eecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHH
Confidence            44568999999999999998873 3444322456678998889999853  6676544

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=96.66  E-value=0.0087  Score=59.41  Aligned_cols=107  Identities=12%  Similarity=0.099  Sum_probs=71.3

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      +|+|+|+..          ....+++.|.+.|.+|.+||+....-+....                      .+.....+
T Consensus         1 ~IgvIG~G~----------mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~~~~~   48 (291)
T TIGR01505         1 KVGFIGLGI----------MGSPMSINLAKAGYQLHVTTIGPEVADELLA----------------------AGAVTAET   48 (291)
T ss_pred             CEEEEEecH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCcccCC
Confidence            589999865          8899999999999999999987533222111                      12234567


Q ss_pred             HHHhcccccEEEEEecccc-cccc--cHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEE
Q 011654          406 AYQAAKDAHGVCILTEWDE-FKTL--DYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYS  464 (480)
Q Consensus       406 ~~~a~~~ad~vvi~t~h~~-~~~~--~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~  464 (480)
                      ..++++++|+|++++.-+. .+.+  ....+...+++..+|+|+.+.....      .+++.|+.|..
T Consensus        49 ~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~  116 (291)
T TIGR01505        49 ARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLD  116 (291)
T ss_pred             HHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEe
Confidence            8899999999999987642 2221  1123445566667999988776532      23345666654

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.65  E-value=0.0073  Score=59.46  Aligned_cols=53  Identities=23%  Similarity=0.423  Sum_probs=44.1

Q ss_pred             cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|.|||.|. +|.|+|..|...  |..|+.+++..                                 .++.+.+++||
T Consensus       159 k~vvVIGrs~~VG~pla~lL~~~--gatVtv~~s~t---------------------------------~~l~~~~~~AD  203 (286)
T PRK14175        159 KNAVVIGRSHIVGQPVSKLLLQK--NASVTILHSRS---------------------------------KDMASYLKDAD  203 (286)
T ss_pred             CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCCc---------------------------------hhHHHHHhhCC
Confidence            4799999988 999999999988  89999998531                                 23455688999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||.+++.|
T Consensus       204 IVIsAvg~p  212 (286)
T PRK14175        204 VIVSAVGKP  212 (286)
T ss_pred             EEEECCCCC
Confidence            999999875

>PLN02306 hydroxypyruvate reductase

Probab=96.64  E-value=0.01  Score=61.23  Aligned_cols=114  Identities=12%  Similarity=0.133  Sum_probs=74.9

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHH-hCCCEEEEECCCCChHHHH--HhhhccccCCCCCCCCCCCCCCCC
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLL-GDKAKLSIYDPQVTEDQIQ--RDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~-~~g~~V~~~DP~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+.+++|+|+|+.-          -...+++.|. .-|.+|.+|||+...+...  ..++   ..+..       .....
T Consensus       162 ~L~gktvGIiG~G~----------IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~---~~l~~-------~~~~~  221 (386)
T PLN02306        162 LLKGQTVGVIGAGR----------IGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYG---QFLKA-------NGEQP  221 (386)
T ss_pred             CCCCCEEEEECCCH----------HHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhc---ccccc-------ccccc
Confidence            57899999999853          6788999985 7899999999987532110  0110   00000       00000


Q ss_pred             CceeeecCHHHhcccccEEEEEeccc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWD-EFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~-~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      ..+.+..++++.++.+|+|+++.... +-+. ++- +..+.|++.+++|.+.+  ++|.+.+
T Consensus       222 ~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin~-~~l~~MK~ga~lIN~aRG~lVDe~AL  282 (386)
T PLN02306        222 VTWKRASSMEEVLREADVISLHPVLDKTTYHLINK-ERLALMKKEAVLVNASRGPVIDEVAL  282 (386)
T ss_pred             ccccccCCHHHHHhhCCEEEEeCCCChhhhhhcCH-HHHHhCCCCeEEEECCCccccCHHHH
Confidence            11233468999999999999988873 3333 454 45578999889999854  7776544

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.62  E-value=0.017  Score=54.28  Aligned_cols=33  Identities=15%  Similarity=0.316  Sum_probs=29.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      ++|.|||.|.||...+..|.+.  |++|++++.+.
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~   43 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKY--GAHIVVISPEL   43 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence            4799999999999999999998  89999998653

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.62  E-value=0.019  Score=57.17  Aligned_cols=112  Identities=13%  Similarity=0.116  Sum_probs=77.2

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      ...+.+++|+|+|..-          -+..++..|.+.|++|.++|...........++   .                 
T Consensus       147 ~~~l~g~kvlViG~G~----------iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G---~-----------------  196 (296)
T PRK08306        147 PITIHGSNVLVLGFGR----------TGMTLARTLKALGANVTVGARKSAHLARITEMG---L-----------------  196 (296)
T ss_pred             CCCCCCCEEEEECCcH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC---C-----------------
Confidence            3456789999999754          789999999999999999999854432222221   0                 


Q ss_pred             ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC---CChHHHhhcCcEEEE
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI---LDVEKLREIGFIVYS  464 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~~  464 (480)
                      .....+++.+.++++|+|+..+++..   ++ ....+.|++..+|||.-.-   .+-+..++.|++..+
T Consensus       197 ~~~~~~~l~~~l~~aDiVI~t~p~~~---i~-~~~l~~~~~g~vIIDla~~pggtd~~~a~~~Gv~~~~  261 (296)
T PRK08306        197 SPFHLSELAEEVGKIDIIFNTIPALV---LT-KEVLSKMPPEALIIDLASKPGGTDFEYAEKRGIKALL  261 (296)
T ss_pred             eeecHHHHHHHhCCCCEEEECCChhh---hh-HHHHHcCCCCcEEEEEccCCCCcCeeehhhCCeEEEE
Confidence            00112356788899999999887653   22 4455678888899998543   223455677887765

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=96.59  E-value=0.014  Score=49.27  Aligned_cols=40  Identities=23%  Similarity=0.378  Sum_probs=35.6

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD   45 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~   45 (480)
                      |.|+|.|.+|..++..|.+.  +.+|+++|.++++++.+.+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~~--~~~vvvid~d~~~~~~~~~~   40 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEG--GIDVVVIDRDPERVEELREE   40 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHT--TSEEEEEESSHHHHHHHHHT
T ss_pred             eEEEcCCHHHHHHHHHHHhC--CCEEEEEECCcHHHHHHHhc
Confidence            57999999999999999996  78999999999999998864

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=96.59  E-value=0.014  Score=57.82  Aligned_cols=90  Identities=19%  Similarity=0.244  Sum_probs=55.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHH--HHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh--
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRI--AAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV--   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v--~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~--   76 (480)
                      +||+|||+|.+|.-++..+.+. ++.++. ++|+|++..  +..++-..+..                  .++.++.+  
T Consensus         5 lrVAIIGtG~IGt~hm~~l~~~-~~velvAVvdid~es~gla~A~~~Gi~~~------------------~~~ie~LL~~   65 (302)
T PRK08300          5 LKVAIIGSGNIGTDLMIKILRS-EHLEPGAMVGIDPESDGLARARRLGVATS------------------AEGIDGLLAM   65 (302)
T ss_pred             CeEEEEcCcHHHHHHHHHHhcC-CCcEEEEEEeCChhhHHHHHHHHcCCCcc------------------cCCHHHHHhC
Confidence            5799999999999988877763 467765 589988642  22222222221                  23444433  


Q ss_pred             ---ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           77 ---AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        77 ---~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                         .+.|+||+|+|...+               .+   ......+.|..|++.|.
T Consensus        66 ~~~~dIDiVf~AT~a~~H---------------~e---~a~~a~eaGk~VID~sP  102 (302)
T PRK08300         66 PEFDDIDIVFDATSAGAH---------------VR---HAAKLREAGIRAIDLTP  102 (302)
T ss_pred             cCCCCCCEEEECCCHHHH---------------HH---HHHHHHHcCCeEEECCc
Confidence               468999999775321               11   22223456888888764

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=96.58  E-value=0.021  Score=60.82  Aligned_cols=110  Identities=15%  Similarity=0.162  Sum_probs=65.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCC--CCChHHHHHhhcCCCE-EEecCH------
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIY--EPGLEDVVTQCRGRNL-FFSTDI------   72 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~l~~~~~~~~l-~~t~d~------   72 (480)
                      .||.|+|+|.+|+..+..+...  |.+|+++|+++++.+..++-...+.  +..-++..   ..+-. ..+.+.      
T Consensus       166 ~kVlViGaG~iGL~Ai~~Ak~l--GA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~---~~gya~~~s~~~~~~~~~  240 (509)
T PRK09424        166 AKVLVIGAGVAGLAAIGAAGSL--GAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGS---GDGYAKVMSEEFIKAEMA  240 (509)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEEecccccccc---ccchhhhcchhHHHHHHH
Confidence            3899999999999887777766  8899999999999988876322210  00000000   00000 011221      


Q ss_pred             --HHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           73 --EKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        73 --~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                        .+.+.++|+||.|+..|...       .+.     .+.++..+.++++.+|++.+.
T Consensus       241 ~~~~~~~gaDVVIetag~pg~~-------aP~-----lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        241 LFAEQAKEVDIIITTALIPGKP-------APK-----LITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             HHHhccCCCCEEEECCCCCccc-------Ccc-----hHHHHHHHhcCCCCEEEEEcc
Confidence              12235799999999765321       121     123555666788888877553

>CHL00194 ycf39 Ycf39; Provisional

Probab=96.57  E-value=0.0041  Score=62.45  Aligned_cols=73  Identities=8%  Similarity=0.091  Sum_probs=51.2

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||.|.| .|++|..++..|.++  ||+|++++|+++....+......+.            .+.+.-..++.++++++|
T Consensus         1 MkIlVtGatG~iG~~lv~~Ll~~--g~~V~~l~R~~~~~~~l~~~~v~~v------------~~Dl~d~~~l~~al~g~d   66 (317)
T CHL00194          1 MSLLVIGATGTLGRQIVRQALDE--GYQVRCLVRNLRKASFLKEWGAELV------------YGDLSLPETLPPSFKGVT   66 (317)
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEEcChHHhhhHhhcCCEEE------------ECCCCCHHHHHHHHCCCC
Confidence            7999999 599999999999998  9999999999876554432111110            112221234556788999


Q ss_pred             EEEEeccC
Q 011654           81 IVFVSVNT   88 (480)
Q Consensus        81 vVii~Vpt   88 (480)
                      +||-+++.
T Consensus        67 ~Vi~~~~~   74 (317)
T CHL00194         67 AIIDASTS   74 (317)
T ss_pred             EEEECCCC
Confidence            99988653

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.56  E-value=0.015  Score=59.98  Aligned_cols=70  Identities=24%  Similarity=0.352  Sum_probs=55.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .|+.|||+|-||.-.|.+|+.+  | .+|++.+|+.++.+.|.+..                .+....-+++.+.+.++|
T Consensus       179 ~~vlvIGAGem~~lva~~L~~~--g~~~i~IaNRT~erA~~La~~~----------------~~~~~~l~el~~~l~~~D  240 (414)
T COG0373         179 KKVLVIGAGEMGELVAKHLAEK--GVKKITIANRTLERAEELAKKL----------------GAEAVALEELLEALAEAD  240 (414)
T ss_pred             CeEEEEcccHHHHHHHHHHHhC--CCCEEEEEcCCHHHHHHHHHHh----------------CCeeecHHHHHHhhhhCC
Confidence            3699999999999999999998  6 68999999999999887531                112222345566789999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||.|+..|
T Consensus       241 vVissTsa~  249 (414)
T COG0373         241 VVISSTSAP  249 (414)
T ss_pred             EEEEecCCC
Confidence            999998665

>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]

Probab=96.54  E-value=0.0095  Score=61.58  Aligned_cols=78  Identities=24%  Similarity=0.279  Sum_probs=55.2

Q ss_pred             cEEEEEcCChhHHHHHH--HHHH--cCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGYVGGPTMA--VIAL--KCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~--~La~--~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~   76 (480)
                      +||+|||.|..++|--.  .+..  ..|+.++.++|+++++.+.+..        -++.++++. ..-++..|+|.++|+
T Consensus         4 ~KI~iIGgGSt~tp~~v~g~l~~~e~l~~~el~L~Did~~r~~~i~~--------~~~~~v~~~g~~~kv~~ttd~~eAl   75 (442)
T COG1486           4 FKIVIIGGGSTYTPKLLLGDLARTEELPVRELALYDIDEERLKIIAI--------LAKKLVEEAGAPVKVEATTDRREAL   75 (442)
T ss_pred             ceEEEECCCccccHHHHHHHHhcCccCCcceEEEEeCCHHHHHHHHH--------HHHHHHHhhCCCeEEEEecCHHHHh
Confidence            58999999999987543  2222  2467899999999998874332        012233321 123478899999999


Q ss_pred             ccCcEEEEecc
Q 011654           77 AEADIVFVSVN   87 (480)
Q Consensus        77 ~~aDvVii~Vp   87 (480)
                      ++||+|+.++-
T Consensus        76 ~gAdfVi~~~r   86 (442)
T COG1486          76 EGADFVITQIR   86 (442)
T ss_pred             cCCCEEEEEEe
Confidence            99999999974

>PRK06487 glycerate dehydrogenase; Provisional

Probab=96.52  E-value=0.0084  Score=60.36  Aligned_cols=96  Identities=10%  Similarity=0.125  Sum_probs=72.5

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.          +-...+++.|..-|.+|.+|||......                            .
T Consensus       145 ~l~gktvgIiG~G----------~IG~~vA~~l~~fgm~V~~~~~~~~~~~----------------------------~  186 (317)
T PRK06487        145 ELEGKTLGLLGHG----------ELGGAVARLAEAFGMRVLIGQLPGRPAR----------------------------P  186 (317)
T ss_pred             ccCCCEEEEECCC----------HHHHHHHHHHhhCCCEEEEECCCCCccc----------------------------c
Confidence            3689999999984          4778999999999999999999643210                            1


Q ss_pred             eeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHHh
Q 011654          401 NVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKLR  456 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~  456 (480)
                      . ..++++.++.+|+|+++.+. ++-+. ++ .+..+.|++.+++|.+-+  ++|.+.+.
T Consensus       187 ~-~~~l~ell~~sDiv~l~lPlt~~T~~li~-~~~~~~mk~ga~lIN~aRG~vVde~AL~  244 (317)
T PRK06487        187 D-RLPLDELLPQVDALTLHCPLTEHTRHLIG-ARELALMKPGALLINTARGGLVDEQALA  244 (317)
T ss_pred             c-ccCHHHHHHhCCEEEECCCCChHHhcCcC-HHHHhcCCCCeEEEECCCccccCHHHHH
Confidence            1 23789999999999999887 44444 45 455578998889999864  77765443

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=96.50  E-value=0.0058  Score=66.46  Aligned_cols=41  Identities=20%  Similarity=0.256  Sum_probs=38.0

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD   45 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~   45 (480)
                      +|.|+|+|.+|..+|..|.++  |++|+++|.|+++++.+++.
T Consensus       419 hiiI~G~G~~G~~la~~L~~~--g~~vvvId~d~~~~~~~~~~  459 (558)
T PRK10669        419 HALLVGYGRVGSLLGEKLLAA--GIPLVVIETSRTRVDELRER  459 (558)
T ss_pred             CEEEECCChHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHC
Confidence            588999999999999999998  99999999999999998863

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=96.50  E-value=0.0058  Score=55.57  Aligned_cols=111  Identities=21%  Similarity=0.162  Sum_probs=64.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCC----ChH-----HHHHhhcCCCEEEecCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEP----GLE-----DVVTQCRGRNLFFSTDI   72 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~----~l~-----~l~~~~~~~~l~~t~d~   72 (480)
                      .||.|+|.|.+|..-+..|...  |++|+.+|.++++.+.+........+.    ...     .-....  .-......+
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~l--Ga~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~f   96 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGL--GAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYE--HPESYESNF   96 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHT--T-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHH--HCCHHHHHH
T ss_pred             eEEEEECCCHHHHHHHHHHhHC--CCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhH--HHHHhHHHH
Confidence            5899999999999999888887  999999999999888776532111100    000     000000  000011234


Q ss_pred             HHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           73 EKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      .+.++.+|+||.+.--+-..       .|     .-+.++..+.++++.+|++-|.
T Consensus        97 ~~~i~~~d~vI~~~~~~~~~-------~P-----~lvt~~~~~~m~~gsvIvDis~  140 (168)
T PF01262_consen   97 AEFIAPADIVIGNGLYWGKR-------AP-----RLVTEEMVKSMKPGSVIVDISC  140 (168)
T ss_dssp             HHHHHH-SEEEEHHHBTTSS---------------SBEHHHHHTSSTTEEEEETTG
T ss_pred             HHHHhhCcEEeeecccCCCC-------CC-----EEEEhHHhhccCCCceEEEEEe
Confidence            55678999999876543211       12     1123455566789999988653

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=96.48  E-value=0.02  Score=57.65  Aligned_cols=102  Identities=16%  Similarity=0.224  Sum_probs=75.6

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +..+.+++++|+|+.          .-...+++.|..-|.+|.+|||.-.++ ...+                      .
T Consensus       141 ~~~l~gktvGIiG~G----------rIG~avA~r~~~Fgm~v~y~~~~~~~~-~~~~----------------------~  187 (324)
T COG1052         141 GFDLRGKTLGIIGLG----------RIGQAVARRLKGFGMKVLYYDRSPNPE-AEKE----------------------L  187 (324)
T ss_pred             ccCCCCCEEEEECCC----------HHHHHHHHHHhcCCCEEEEECCCCChH-HHhh----------------------c
Confidence            346889999999984          467899999998899999999987622 2221                      1


Q ss_pred             ceeeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      +..|.+ +++.++.+|.|++..+- ++-+. ++- +..+.|++.+++|.+-+  +.|.+.+
T Consensus       188 ~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~-~~l~~mk~ga~lVNtaRG~~VDe~AL  246 (324)
T COG1052         188 GARYVD-LDELLAESDIISLHCPLTPETRHLINA-EELAKMKPGAILVNTARGGLVDEQAL  246 (324)
T ss_pred             Cceecc-HHHHHHhCCEEEEeCCCChHHhhhcCH-HHHHhCCCCeEEEECCCccccCHHHH
Confidence            245665 99999999999998876 44333 454 44578998889998754  6676543

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.48  E-value=0.049  Score=58.25  Aligned_cols=114  Identities=17%  Similarity=0.191  Sum_probs=69.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+|.|+|+|..|.+.+..|...  |++|+++|.+++..+.+.+....                 +.......+.+.++|+
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~--G~~v~~~D~~~~~~~~l~~~g~~-----------------~~~~~~~~~~l~~~D~   73 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRF--GARPTVCDDDPDALRPHAERGVA-----------------TVSTSDAVQQIADYAL   73 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHhCCCE-----------------EEcCcchHhHhhcCCE
Confidence            4799999999999999888887  99999999887766554431111                 1111122334678999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHH---------HHH-hhC------CCCCEEEEecCCccchHHH-HHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MIA-NVS------NSNKIVVEKSTVPVKTAEA-IEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i~-~~l------~~~~iVi~~STv~~gt~~~-l~~~l~~~  144 (480)
                      ||.+-.-|.+        .   ..++.+-+         ++. ...      .+..+|-+..|..-.||.. +..+|+..
T Consensus        74 VV~SpGi~~~--------~---p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~~  142 (488)
T PRK03369         74 VVTSPGFRPT--------A---PVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIAA  142 (488)
T ss_pred             EEECCCCCCC--------C---HHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence            9888654432        1   22222211         111 111      1335777777877667665 56778764


Q ss_pred             C
Q 011654          145 S  145 (480)
Q Consensus       145 ~  145 (480)
                      +
T Consensus       143 g  143 (488)
T PRK03369        143 G  143 (488)
T ss_pred             C
Confidence            3

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=96.45  E-value=0.016  Score=53.79  Aligned_cols=74  Identities=19%  Similarity=0.238  Sum_probs=51.6

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE--ecC---HHHH
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF--STD---IEKH   75 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~--t~d---~~~a   75 (480)
                      +++.|+|. |.+|..++..|++.  |++|++++|+.++.+.+.+...           .. ....+..  ..+   ..++
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~--g~~V~l~~R~~~~~~~l~~~l~-----------~~-~~~~~~~~~~~~~~~~~~~   94 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLARE--GARVVLVGRDLERAQKAADSLR-----------AR-FGEGVGAVETSDDAARAAA   94 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHHHH-----------hh-cCCcEEEeeCCCHHHHHHH
Confidence            57999995 99999999999987  8999999999988877653210           00 0011221  122   2356


Q ss_pred             hccCcEEEEeccCC
Q 011654           76 VAEADIVFVSVNTP   89 (480)
Q Consensus        76 ~~~aDvVii~Vptp   89 (480)
                      ++++|+||.++|.+
T Consensus        95 ~~~~diVi~at~~g  108 (194)
T cd01078          95 IKGADVVFAAGAAG  108 (194)
T ss_pred             HhcCCEEEECCCCC
Confidence            78999999997654

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.38  E-value=0.045  Score=58.04  Aligned_cols=112  Identities=13%  Similarity=0.140  Sum_probs=66.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH-----HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS-----RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-----~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      .||+|+|+|..|.++|..|.+.  |++|+++|.++.     ..+.+.+...                 .+.......+.+
T Consensus        15 ~~i~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~~~~~~~~~~~l~~~gi-----------------~~~~~~~~~~~~   75 (458)
T PRK01710         15 KKVAVVGIGVSNIPLIKFLVKL--GAKVTAFDKKSEEELGEVSNELKELGV-----------------KLVLGENYLDKL   75 (458)
T ss_pred             CeEEEEcccHHHHHHHHHHHHC--CCEEEEECCCCCccchHHHHHHHhCCC-----------------EEEeCCCChHHh
Confidence            5899999999999999999998  999999998642     1122332100                 111112222336


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHH----------HHhhCCCCCEEEEecCCccchHHH-HHHHHHhc
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARM----------IANVSNSNKIVVEKSTVPVKTAEA-IEKILTHN  144 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~----------i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~  144 (480)
                      .++|+||.+..-+.           +-..+..+.+.          +.+. .+..+|-+..|..-.||.. +..+|...
T Consensus        76 ~~~dlVV~Spgi~~-----------~~p~~~~a~~~~i~i~s~~e~~~~~-~~~~vIaITGTnGKTTT~~ll~~iL~~~  142 (458)
T PRK01710         76 DGFDVIFKTPSMRI-----------DSPELVKAKEEGAYITSEMEEFIKY-CPAKVFGVTGSDGKTTTTTLIYEMLKEE  142 (458)
T ss_pred             ccCCEEEECCCCCC-----------CchHHHHHHHcCCcEEechHHhhhh-cCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence            78999888732222           21223332211          1122 2345777777877777766 56777754

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=96.33  E-value=0.026  Score=59.81  Aligned_cols=120  Identities=12%  Similarity=0.147  Sum_probs=79.8

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      .|+|+|+.          .+...+++.|.++|++|.+||......+.......               .+  ..+...++
T Consensus         1 ~IG~IGLG----------~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~---------------~g--~~~~~~~s   53 (467)
T TIGR00873         1 DIGVIGLA----------VMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHA---------------KG--KKIVGAYS   53 (467)
T ss_pred             CEEEEeeH----------HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhcc---------------CC--CCceecCC
Confidence            37899985          48999999999999999999986544322211000               00  11333456


Q ss_pred             HHHhc---ccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecCCCCcC
Q 011654          406 AYQAA---KDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIGKPLDPW  472 (480)
Q Consensus       406 ~~~a~---~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~~~~~~  472 (480)
                      +++.+   +.+|+|++++...+.-+--.+.+...+.+..+|||+.|.....      ++.+.|+.|.+.|...-++
T Consensus        54 ~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~  129 (467)
T TIGR00873        54 IEEFVQSLERPRKIMLMVKAGAPVDAVINQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE  129 (467)
T ss_pred             HHHHHhhcCCCCEEEEECCCcHHHHHHHHHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence            66644   5789999998885422222356666666666999999987543      3446799999988765544

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>PLN02256 arogenate dehydrogenase

Probab=96.33  E-value=0.015  Score=58.13  Aligned_cols=113  Identities=13%  Similarity=0.155  Sum_probs=73.9

Q ss_pred             HHHHhHHHHHHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhcccc
Q 011654          302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKF  381 (480)
Q Consensus       302 ~N~~~~~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~  381 (480)
                      +...||-..-.++.+++. +.+..+|+|+|+..          .+..++..|.+.|.+|.+||+.-. ......+     
T Consensus        15 ~~~~~~~~~~~~~~~~~~-~~~~~kI~IIG~G~----------mG~slA~~L~~~G~~V~~~d~~~~-~~~a~~~-----   77 (304)
T PLN02256         15 IDAAQPFDYESRLQEELE-KSRKLKIGIVGFGN----------FGQFLAKTFVKQGHTVLATSRSDY-SDIAAEL-----   77 (304)
T ss_pred             ccccCCCChHhHHhHhhc-cCCCCEEEEEeeCH----------HHHHHHHHHHhCCCEEEEEECccH-HHHHHHc-----
Confidence            334444333345555553 34677999999855          678899999999999999999742 2222221     


Q ss_pred             CCCCCCCCCCCCCCCCCceeeecCHHHhc-ccccEEEEEecccccccccHHHH-HHhcCCCCEEEEcCCC
Q 011654          382 DWDHPIHLQPMSPPASKQVNVVWDAYQAA-KDAHGVCILTEWDEFKTLDYQKI-FDNMRKPAYIFDGRNI  449 (480)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~ad~vvi~t~h~~~~~~~~~~~-~~~~~~~~~i~D~~~~  449 (480)
                                       ++...++.++++ .++|+|+++|.-..+.++- .++ ...+++..+|+|.-.+
T Consensus        78 -----------------gv~~~~~~~e~~~~~aDvVilavp~~~~~~vl-~~l~~~~l~~~~iviDv~Sv  129 (304)
T PLN02256         78 -----------------GVSFFRDPDDFCEEHPDVVLLCTSILSTEAVL-RSLPLQRLKRSTLFVDVLSV  129 (304)
T ss_pred             -----------------CCeeeCCHHHHhhCCCCEEEEecCHHHHHHHH-HhhhhhccCCCCEEEecCCc
Confidence                             233456777766 4799999999977655422 233 3335556799999884

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=96.32  E-value=0.11  Score=52.18  Aligned_cols=125  Identities=17%  Similarity=0.168  Sum_probs=76.5

Q ss_pred             HHHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEECCCCCh-HHHHHhhhccccCCCCCC
Q 011654          310 FVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDK-AKLSIYDPQVTE-DQIQRDLSMKKFDWDHPI  387 (480)
Q Consensus       310 ~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~  387 (480)
                      .++.....+ ..+.+.+|+|+|..-          .+..+++.|...| .+|.++|+.... ..+...++          
T Consensus       165 Av~~a~~~~-~~l~~~~V~ViGaG~----------iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g----------  223 (311)
T cd05213         165 AVELAEKIF-GNLKGKKVLVIGAGE----------MGELAAKHLAAKGVAEITIANRTYERAEELAKELG----------  223 (311)
T ss_pred             HHHHHHHHh-CCccCCEEEEECcHH----------HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcC----------
Confidence            344444433 346899999999743          6788889998866 679999986543 23333322          


Q ss_pred             CCCCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC--CCChHHHhhcCcEEEEe
Q 011654          388 HLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKLREIGFIVYSI  465 (480)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~~~g~~y~~i  465 (480)
                                ......++.++++.++|+||.+|..+++.++..+.+....+++.+|+|..+  -++++-..-.|+.++-|
T Consensus       224 ----------~~~~~~~~~~~~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavPrdi~~~v~~l~~v~l~~v  293 (311)
T cd05213         224 ----------GNAVPLDELLELLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVPRDIEPEVGELEGVRLYTI  293 (311)
T ss_pred             ----------CeEEeHHHHHHHHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCCCCCchhhccCCCcEEEEH
Confidence                      011112456788899999999999998733222222222234679999875  24444333346666544

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=96.29  E-value=0.024  Score=55.72  Aligned_cols=95  Identities=21%  Similarity=0.389  Sum_probs=68.4

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE-Eec---CHHHHhcc
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF-FST---DIEKHVAE   78 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~-~t~---d~~~a~~~   78 (480)
                      ||+|||.|.+|+--|....--  |-+|+..|+|.+++..+..-            .    .+++. ..+   ++++++..
T Consensus       170 kv~iiGGGvvgtnaAkiA~gl--gA~Vtild~n~~rl~~ldd~------------f----~~rv~~~~st~~~iee~v~~  231 (371)
T COG0686         170 KVVVLGGGVVGTNAAKIAIGL--GADVTILDLNIDRLRQLDDL------------F----GGRVHTLYSTPSNIEEAVKK  231 (371)
T ss_pred             cEEEECCccccchHHHHHhcc--CCeeEEEecCHHHHhhhhHh------------h----CceeEEEEcCHHHHHHHhhh
Confidence            799999999999877665544  88999999999988776531            1    12322 122   35677899


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +|++|=+|-.|-..       .|-     -+.+++.+.+++|.+||+-.
T Consensus       232 aDlvIgaVLIpgak-------aPk-----Lvt~e~vk~MkpGsVivDVA  268 (371)
T COG0686         232 ADLVIGAVLIPGAK-------APK-----LVTREMVKQMKPGSVIVDVA  268 (371)
T ss_pred             ccEEEEEEEecCCC-------Cce-----ehhHHHHHhcCCCcEEEEEE
Confidence            99999888665322       233     35678888899999998754

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.29  E-value=0.032  Score=50.27  Aligned_cols=91  Identities=15%  Similarity=0.093  Sum_probs=58.0

Q ss_pred             HHHHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCC
Q 011654          309 RFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIH  388 (480)
Q Consensus       309 ~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~  388 (480)
                      -+++.+. ..+-++++++|.|+|-|.         .-..+|+..|.++|+.|.+.+...                     
T Consensus        22 aii~lL~-~~~~~l~Gk~v~VvGrs~---------~VG~Pla~lL~~~~atVt~~h~~T---------------------   70 (160)
T PF02882_consen   22 AIIELLE-YYGIDLEGKKVVVVGRSN---------IVGKPLAMLLLNKGATVTICHSKT---------------------   70 (160)
T ss_dssp             HHHHHHH-HTT-STTT-EEEEE-TTT---------TTHHHHHHHHHHTT-EEEEE-TTS---------------------
T ss_pred             HHHHHHH-hcCCCCCCCEEEEECCcC---------CCChHHHHHHHhCCCeEEeccCCC---------------------
Confidence            3334333 344578999999999643         457889999999999999977654                     


Q ss_pred             CCCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011654          389 LQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~  451 (480)
                                     .++++.++.||+||.++..+.|-.-+  ++    ++.++|||..--+.
T Consensus        71 ---------------~~l~~~~~~ADIVVsa~G~~~~i~~~--~i----k~gavVIDvG~~~~  112 (160)
T PF02882_consen   71 ---------------KNLQEITRRADIVVSAVGKPNLIKAD--WI----KPGAVVIDVGINYV  112 (160)
T ss_dssp             ---------------SSHHHHHTTSSEEEE-SSSTT-B-GG--GS-----TTEEEEE--CEEE
T ss_pred             ---------------CcccceeeeccEEeeeeccccccccc--cc----cCCcEEEecCCccc
Confidence                           23566689999999999999974323  33    55679999865444

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase

Probab=96.28  E-value=0.11  Score=50.15  Aligned_cols=108  Identities=19%  Similarity=0.227  Sum_probs=70.8

Q ss_pred             CCEEEecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHh
Q 011654           64 RNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTH  143 (480)
Q Consensus        64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~  143 (480)
                      -++++++|-.|+++++|++|+-+|-.  .      ..      ...++.+.++++.|.+|....|+|+-.   +..+++.
T Consensus       125 aGvkVtsDD~EAv~~aei~I~ftPfG--~------~q------~~Iikkii~~lpEgAII~~tCTIpt~~---ly~ilE~  187 (340)
T TIGR01723       125 LGLKVTTDDREAVEDADIIITWLPKG--N------KQ------PDIIKKFIDDIPEGAIVTHACTIPTTK---FAKIFED  187 (340)
T ss_pred             cCceEecCcHHHhcCCCEEEEEcCCC--C------Cc------hHHHHHHHhhCCCCCEEeccccCChHH---HHHHHHh
Confidence            45778888888999999999996632  1      11      356889999999999999888998754   3344444


Q ss_pred             cCCCCceeE-eeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccC
Q 011654          144 NSREIKYQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWV  199 (480)
Q Consensus       144 ~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~  199 (480)
                      .+. .|+.+ .|+|- .-||..     .  ++.+.  ..-.+++..+++.+|-++..
T Consensus       188 l~R-~DvgVsS~HPa-aVPgt~-----~--q~Yi~--egyAtEEqI~klveL~~sa~  233 (340)
T TIGR01723       188 LGR-EDLNVTSYHPG-CVPEMK-----G--QVYIA--EGYASEEAVNKLYELGKKAR  233 (340)
T ss_pred             hCc-ccCCeeccCCC-CCCCCC-----C--ceEee--cccCCHHHHHHHHHHHHHhC
Confidence            332 34444 35674 234432     1  12222  12236889999999988875

This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.27  E-value=0.043  Score=58.44  Aligned_cols=37  Identities=22%  Similarity=0.223  Sum_probs=32.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIA   40 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~   40 (480)
                      +||.|+|+|..|.++|..|.++  |++|+++|++.....
T Consensus        16 ~~v~v~G~G~sG~a~a~~L~~~--G~~V~~~D~~~~~~~   52 (473)
T PRK00141         16 GRVLVAGAGVSGRGIAAMLSEL--GCDVVVADDNETARH   52 (473)
T ss_pred             CeEEEEccCHHHHHHHHHHHHC--CCEEEEECCChHHHH
Confidence            5799999999999999999998  899999998766543

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.26  E-value=0.028  Score=55.69  Aligned_cols=80  Identities=16%  Similarity=0.170  Sum_probs=61.0

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+-++++++|+|+|=+.         ....+++..|.++|+.|.+++...                              
T Consensus       152 ~~i~~~Gk~V~viGrs~---------~mG~PmA~~L~~~g~tVtv~~~rT------------------------------  192 (296)
T PRK14188        152 VHGDLSGLNAVVIGRSN---------LVGKPMAQLLLAANATVTIAHSRT------------------------------  192 (296)
T ss_pred             hCCCCCCCEEEEEcCCc---------chHHHHHHHHHhCCCEEEEECCCC------------------------------
Confidence            33468999999999433         578999999999999999986421                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN  448 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~  448 (480)
                            .++.++++.||+|+.++..+.+-+-+|      +++..+|||.--
T Consensus       193 ------~~l~e~~~~ADIVIsavg~~~~v~~~~------lk~GavVIDvGi  231 (296)
T PRK14188        193 ------RDLPAVCRRADILVAAVGRPEMVKGDW------IKPGATVIDVGI  231 (296)
T ss_pred             ------CCHHHHHhcCCEEEEecCChhhcchhe------ecCCCEEEEcCC
Confidence                  135777899999999999998643222      456679999753

>PRK06932 glycerate dehydrogenase; Provisional

Probab=96.26  E-value=0.014  Score=58.58  Aligned_cols=96  Identities=13%  Similarity=0.149  Sum_probs=71.1

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.          +-...+++.|..-|.+|.+||+..... .                          ..
T Consensus       144 ~l~gktvgIiG~G----------~IG~~va~~l~~fg~~V~~~~~~~~~~-~--------------------------~~  186 (314)
T PRK06932        144 DVRGSTLGVFGKG----------CLGTEVGRLAQALGMKVLYAEHKGASV-C--------------------------RE  186 (314)
T ss_pred             ccCCCEEEEECCC----------HHHHHHHHHHhcCCCEEEEECCCcccc-c--------------------------cc
Confidence            3689999999984          467889999999999999999853211 0                          00


Q ss_pred             eeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      . ..++++.++.+|+|+++.+. ++-+. ++ .+..+.|++.+++|.+.+  ++|.+.+
T Consensus       187 ~-~~~l~ell~~sDiv~l~~Plt~~T~~li~-~~~l~~mk~ga~lIN~aRG~~Vde~AL  243 (314)
T PRK06932        187 G-YTPFEEVLKQADIVTLHCPLTETTQNLIN-AETLALMKPTAFLINTGRGPLVDEQAL  243 (314)
T ss_pred             c-cCCHHHHHHhCCEEEEcCCCChHHhcccC-HHHHHhCCCCeEEEECCCccccCHHHH
Confidence            1 24789999999999999886 44444 45 455678998889999854  7776544

>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional

Probab=96.26  E-value=0.013  Score=59.57  Aligned_cols=69  Identities=14%  Similarity=0.240  Sum_probs=43.1

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCC---eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKI---EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~---~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      ||||+||| .|++|.-+...|+++  +|   ++..+.++.+.-+.+.     +  .+          ..+.+.+.....+
T Consensus         1 ~~~V~IvGAtG~vG~~l~~lL~~~--~hp~~~l~~l~s~~~~g~~l~-----~--~g----------~~i~v~d~~~~~~   61 (334)
T PRK14874          1 GYNVAVVGATGAVGREMLNILEER--NFPVDKLRLLASARSAGKELS-----F--KG----------KELKVEDLTTFDF   61 (334)
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC--CCCcceEEEEEccccCCCeee-----e--CC----------ceeEEeeCCHHHH
Confidence            68999999 599999999999986  55   4566655433221111     0  00          1233322112235


Q ss_pred             ccCcEEEEeccC
Q 011654           77 AEADIVFVSVNT   88 (480)
Q Consensus        77 ~~aDvVii~Vpt   88 (480)
                      .++|+||.|+|.
T Consensus        62 ~~vDvVf~A~g~   73 (334)
T PRK14874         62 SGVDIALFSAGG   73 (334)
T ss_pred             cCCCEEEECCCh
Confidence            789999999874

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=96.26  E-value=0.026  Score=50.78  Aligned_cols=72  Identities=21%  Similarity=0.366  Sum_probs=49.0

Q ss_pred             cEEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAG-YVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|.|||-+ .+|.|++..|.++  |..|+..+..                                 |.++.+.++.||
T Consensus        37 k~v~VvGrs~~VG~Pla~lL~~~--~atVt~~h~~---------------------------------T~~l~~~~~~AD   81 (160)
T PF02882_consen   37 KKVVVVGRSNIVGKPLAMLLLNK--GATVTICHSK---------------------------------TKNLQEITRRAD   81 (160)
T ss_dssp             -EEEEE-TTTTTHHHHHHHHHHT--T-EEEEE-TT---------------------------------SSSHHHHHTTSS
T ss_pred             CEEEEECCcCCCChHHHHHHHhC--CCeEEeccCC---------------------------------CCcccceeeecc
Confidence            589999987 6999999999998  8999998853                                 234556688999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      +||.+++.|--.              .      ...++++.+||+.++
T Consensus        82 IVVsa~G~~~~i--------------~------~~~ik~gavVIDvG~  109 (160)
T PF02882_consen   82 IVVSAVGKPNLI--------------K------ADWIKPGAVVIDVGI  109 (160)
T ss_dssp             EEEE-SSSTT-B---------------------GGGS-TTEEEEE--C
T ss_pred             EEeeeecccccc--------------c------cccccCCcEEEecCC
Confidence            999999865311              1      245788999987554

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=96.25  E-value=0.086  Score=52.36  Aligned_cols=106  Identities=11%  Similarity=0.078  Sum_probs=66.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++++|+|+|.+|+-.|.++..-  |..|++||.-.-.-+ ..+                   -++.+. +.+|++..||+
T Consensus       147 KTLgvlG~GrIGseVA~r~k~~--gm~vI~~dpi~~~~~-~~a-------------------~gvq~v-sl~Eil~~ADF  203 (406)
T KOG0068|consen  147 KTLGVLGLGRIGSEVAVRAKAM--GMHVIGYDPITPMAL-AEA-------------------FGVQLV-SLEEILPKADF  203 (406)
T ss_pred             cEEEEeecccchHHHHHHHHhc--CceEEeecCCCchHH-HHh-------------------ccceee-eHHHHHhhcCE
Confidence            4689999999999999999877  889999986321111 111                   123443 46788999998


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHh
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTH  143 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~  143 (480)
                      |-+=+|-           .|+++.+.+  +.-...+++|.-||+.|--..=.+..+.+.++.
T Consensus       204 itlH~PL-----------tP~T~~lin--~~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~s  252 (406)
T KOG0068|consen  204 ITLHVPL-----------TPSTEKLLN--DETFAKMKKGVRIINVARGGVVDEPALVRALDS  252 (406)
T ss_pred             EEEccCC-----------CcchhhccC--HHHHHHhhCCcEEEEecCCceechHHHHHHHhc
Confidence            8776653           233333322  223345788999998774333233445565654

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=96.23  E-value=0.05  Score=57.70  Aligned_cols=112  Identities=17%  Similarity=0.154  Sum_probs=67.9

Q ss_pred             cEEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHH-HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHHhcc
Q 011654            2 VKICCIGAGYVGGP-TMAVIALKCPKIEVAVVDISVS-RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a~~~   78 (480)
                      ++|.|||+|..|.+ +|..|.++  |++|+++|.++. ..+.+.+.                   ++.+. ....+.+.+
T Consensus         8 ~~v~viG~G~sG~s~~a~~L~~~--G~~V~~~D~~~~~~~~~l~~~-------------------gi~~~~~~~~~~~~~   66 (461)
T PRK00421          8 KRIHFVGIGGIGMSGLAEVLLNL--GYKVSGSDLKESAVTQRLLEL-------------------GAIIFIGHDAENIKD   66 (461)
T ss_pred             CEEEEEEEchhhHHHHHHHHHhC--CCeEEEECCCCChHHHHHHHC-------------------CCEEeCCCCHHHCCC
Confidence            57999999999999 78899888  999999998643 22223221                   12221 111233667


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHH---------HH-HhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MI-ANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS  145 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i-~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~  145 (480)
                      +|+||++-.-|.           +...++.+.+         ++ ...++...+|.+..|..-.||.. +..+|+..+
T Consensus        67 ~d~vv~spgi~~-----------~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         67 ADVVVYSSAIPD-----------DNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             CCEEEECCCCCC-----------CCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            999888744332           2222333221         12 23333446787777876666655 677887654

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.20  E-value=0.071  Score=56.83  Aligned_cols=33  Identities=21%  Similarity=0.229  Sum_probs=29.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      ++|.|||.|..|..+|..|++.  |++|+++|.++
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~--G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLEL--GARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence            4799999999999999999988  99999999654

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.19  E-value=0.018  Score=56.58  Aligned_cols=71  Identities=24%  Similarity=0.369  Sum_probs=55.0

Q ss_pred             cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|.|||-|. +|.|+|..|..+  |..|++++..                                 |.++++.++.||
T Consensus       160 k~vvViGrs~iVG~Pla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD  204 (285)
T PRK10792        160 LNAVVVGASNIVGRPMSLELLLA--GCTVTVCHRF---------------------------------TKNLRHHVRNAD  204 (285)
T ss_pred             CEEEEECCCcccHHHHHHHHHHC--CCeEEEEECC---------------------------------CCCHHHHHhhCC
Confidence            4799999988 999999999988  8899998752                                 234566688999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +||.+++.|.-              +.      ..+++++++||+..
T Consensus       205 Ivi~avG~p~~--------------v~------~~~vk~gavVIDvG  231 (285)
T PRK10792        205 LLVVAVGKPGF--------------IP------GEWIKPGAIVIDVG  231 (285)
T ss_pred             EEEEcCCCccc--------------cc------HHHcCCCcEEEEcc
Confidence            99999976521              11      15678999998644

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=96.18  E-value=0.017  Score=57.24  Aligned_cols=98  Identities=13%  Similarity=0.071  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecCHHHhcccccEEEEEecccc
Q 011654          345 PAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDE  424 (480)
Q Consensus       345 p~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~  424 (480)
                      ....+++.|.+.|.+|.+||+.....+...+                      .+....+++.++++++|+|++++..++
T Consensus         7 mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~----------------------~g~~~~~s~~~~~~~advVil~vp~~~   64 (288)
T TIGR01692         7 MGGPMAANLLKAGHPVRVFDLFPDAVEEAVA----------------------AGAQAAASPAEAAEGADRVITMLPAGQ   64 (288)
T ss_pred             hHHHHHHHHHhCCCeEEEEeCCHHHHHHHHH----------------------cCCeecCCHHHHHhcCCEEEEeCCChH
Confidence            6788999999999999999987543322221                      123456788999999999999998854


Q ss_pred             -ccccc--HHHHHHhcCCCCEEEEcCCCCCh------HHHhhcCcEEEE
Q 011654          425 -FKTLD--YQKIFDNMRKPAYIFDGRNILDV------EKLREIGFIVYS  464 (480)
Q Consensus       425 -~~~~~--~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~  464 (480)
                       ++++-  .+.+...+++..+|||+..+-+.      +.+++.|+.|..
T Consensus        65 ~~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vd  113 (288)
T TIGR01692        65 HVISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMD  113 (288)
T ss_pred             HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEE
Confidence             44321  13555566666799999966643      234456888865

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=96.15  E-value=0.037  Score=52.53  Aligned_cols=33  Identities=24%  Similarity=0.169  Sum_probs=29.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~   36 (480)
                      ++|+|.|+|.+|..+|..|.+.  |. .|.+.|.+.
T Consensus        24 ~~vaIqGfGnVG~~~a~~L~~~--G~~vV~vsD~~g   57 (217)
T cd05211          24 LTVAVQGLGNVGWGLAKKLAEE--GGKVLAVSDPDG   57 (217)
T ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCEEEEEEcCCC
Confidence            5899999999999999999998  66 566789887

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=96.14  E-value=0.022  Score=62.76  Aligned_cols=70  Identities=14%  Similarity=0.270  Sum_probs=52.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCH---H-HHhc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDI---E-KHVA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~---~-~a~~   77 (480)
                      .+|-|+|.|.+|..+|..|.++  |++++++|.|+++++.+++...+++.            |.   .+++   + .-++
T Consensus       401 ~~vII~G~Gr~G~~va~~L~~~--g~~vvvID~d~~~v~~~~~~g~~v~~------------GD---at~~~~L~~agi~  463 (621)
T PRK03562        401 PRVIIAGFGRFGQIVGRLLLSS--GVKMTVLDHDPDHIETLRKFGMKVFY------------GD---ATRMDLLESAGAA  463 (621)
T ss_pred             CcEEEEecChHHHHHHHHHHhC--CCCEEEEECCHHHHHHHHhcCCeEEE------------Ee---CCCHHHHHhcCCC
Confidence            4689999999999999999998  89999999999999999864332221            10   1222   1 1246


Q ss_pred             cCcEEEEeccC
Q 011654           78 EADIVFVSVNT   88 (480)
Q Consensus        78 ~aDvVii~Vpt   88 (480)
                      ++|.+++|+++
T Consensus       464 ~A~~vvv~~~d  474 (621)
T PRK03562        464 KAEVLINAIDD  474 (621)
T ss_pred             cCCEEEEEeCC
Confidence            89999999764

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=96.13  E-value=0.048  Score=52.14  Aligned_cols=118  Identities=18%  Similarity=0.229  Sum_probs=68.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeC----------CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDI----------SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST   70 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~----------~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~   70 (480)
                      ++|+|.|.|.+|..+|..|.+.  |.+|+ +.|.          |.+.+..+++..-.+..  .        .+ .+.. 
T Consensus        32 ~~v~I~G~G~VG~~~a~~L~~~--g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~--~--------~~-~~~~-   97 (227)
T cd01076          32 ARVAIQGFGNVGSHAARFLHEA--GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLG--F--------PG-AERI-   97 (227)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCccc--C--------CC-ceec-
Confidence            5899999999999999999998  89998 5676          66665555432111100  0        00 0111 


Q ss_pred             CHHHHh-ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCc
Q 011654           71 DIEKHV-AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIK  149 (480)
Q Consensus        71 d~~~a~-~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~  149 (480)
                      +.++.+ .+||+++-|.++..-          +    .+.+.++    +  .-+|.++-..|-| ....+.|.+.+    
T Consensus        98 ~~~~i~~~~~Dvlip~a~~~~i----------~----~~~~~~l----~--a~~I~egAN~~~t-~~a~~~L~~rG----  152 (227)
T cd01076          98 TNEELLELDCDILIPAALENQI----------T----ADNADRI----K--AKIIVEAANGPTT-PEADEILHERG----  152 (227)
T ss_pred             CCccceeecccEEEecCccCcc----------C----HHHHhhc----e--eeEEEeCCCCCCC-HHHHHHHHHCC----
Confidence            111211 389999999765321          1    1122222    2  3344555554445 55667777764    


Q ss_pred             eeEeeCCcccc
Q 011654          150 YQILSNPEFLA  160 (480)
Q Consensus       150 ~~v~~~Pe~~~  160 (480)
                        +.+.|.++.
T Consensus       153 --i~~~PD~~a  161 (227)
T cd01076         153 --VLVVPDILA  161 (227)
T ss_pred             --CEEEChHHh
Confidence              567787654

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional

Probab=96.11  E-value=0.18  Score=48.73  Aligned_cols=108  Identities=20%  Similarity=0.212  Sum_probs=71.2

Q ss_pred             CCEEEecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHh
Q 011654           64 RNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTH  143 (480)
Q Consensus        64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~  143 (480)
                      -++++++|-.|+++++|++++-+|-  ..      ..      ..+++.+.++++.|.+|....|+|+-.   +..++++
T Consensus       127 aGvkVtsDD~EAvk~aei~I~ftPf--G~------~t------~~Iikki~~~ipEgAII~~tCTIpt~~---ly~~le~  189 (342)
T PRK00961        127 LGLKVTTDDREAVADADIVITWLPK--GG------MQ------PDIIEKFADDIKEGAIVTHACTIPTTK---FAKIFKD  189 (342)
T ss_pred             cCceEecCcHHHhcCCCEEEEecCC--CC------Cc------hHHHHHHHhhCCCCCEEeccccCCHHH---HHHHHHH
Confidence            4577888888899999999999663  21      11      356889999999999999888998654   3444554


Q ss_pred             cCCCCceeE-eeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccC
Q 011654          144 NSREIKYQI-LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWV  199 (480)
Q Consensus       144 ~~~g~~~~v-~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~  199 (480)
                      .+. .|+.+ .|+|-- -||..       .+..+|-  .-.+++.++++.+|-++..
T Consensus       190 l~R-~DvgIsS~HPaa-VPgt~-------Gq~~i~e--gyAtEEqI~klveL~~sa~  235 (342)
T PRK00961        190 LGR-DDLNVTSYHPGA-VPEMK-------GQVYIAE--GYADEEAVEKLYEIGKKAR  235 (342)
T ss_pred             hCc-ccCCeeccCCCC-CCCCC-------Cceeccc--ccCCHHHHHHHHHHHHHhC
Confidence            332 34444 356642 23322       1233442  2336888999999988875

>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]

Probab=96.09  E-value=0.04  Score=55.02  Aligned_cols=81  Identities=17%  Similarity=0.247  Sum_probs=53.6

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHH---HHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRI---AAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v---~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      |+|+|-|+ |++|+-+...|..+  ||.|.+.-|+++.-   +.|.+-      ++..+.+. +....+....++.+++.
T Consensus         7 ~~VcVTGAsGfIgswivk~LL~r--GY~V~gtVR~~~~~k~~~~L~~l------~~a~~~l~-l~~aDL~d~~sf~~ai~   77 (327)
T KOG1502|consen    7 KKVCVTGASGFIGSWIVKLLLSR--GYTVRGTVRDPEDEKKTEHLRKL------EGAKERLK-LFKADLLDEGSFDKAID   77 (327)
T ss_pred             cEEEEeCCchHHHHHHHHHHHhC--CCEEEEEEcCcchhhhHHHHHhc------ccCcccce-EEeccccccchHHHHHh
Confidence            68999985 99999999999998  99999999998752   223221      00000000 00123444567888999


Q ss_pred             cCcEEEEeccCCCCc
Q 011654           78 EADIVFVSVNTPTKT   92 (480)
Q Consensus        78 ~aDvVii~Vptp~~~   92 (480)
                      +||.||=+- +|.+.
T Consensus        78 gcdgVfH~A-sp~~~   91 (327)
T KOG1502|consen   78 GCDGVFHTA-SPVDF   91 (327)
T ss_pred             CCCEEEEeC-ccCCC
Confidence            999987654 45443

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.07  E-value=0.035  Score=49.90  Aligned_cols=31  Identities=19%  Similarity=0.126  Sum_probs=28.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      .+|.|||.|.+|...+..|.+.  |++|++++.
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~--ga~V~VIsp   44 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDT--GAFVTVVSP   44 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcC
Confidence            4799999999999999999998  999999963

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=96.07  E-value=0.024  Score=55.80  Aligned_cols=71  Identities=28%  Similarity=0.389  Sum_probs=53.5

Q ss_pred             cEEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAG-YVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|.|||-| .+|.|+|..|.++  |..|++++..                                 |.++.+.++.||
T Consensus       158 k~vvVvGrs~~VG~Pla~lL~~~--gAtVtv~hs~---------------------------------t~~l~~~~~~AD  202 (285)
T PRK14191        158 KDVVIIGASNIVGKPLAMLMLNA--GASVSVCHIL---------------------------------TKDLSFYTQNAD  202 (285)
T ss_pred             CEEEEECCCchhHHHHHHHHHHC--CCEEEEEeCC---------------------------------cHHHHHHHHhCC
Confidence            479999999 9999999999988  8999988532                                 123455688999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +||.+++.|--.         +           ...+++|.+||+..
T Consensus       203 IvV~AvG~p~~i---------~-----------~~~vk~GavVIDvG  229 (285)
T PRK14191        203 IVCVGVGKPDLI---------K-----------ASMVKKGAVVVDIG  229 (285)
T ss_pred             EEEEecCCCCcC---------C-----------HHHcCCCcEEEEee
Confidence            999999876311         1           13458899998643

>PRK06270 homoserine dehydrogenase; Provisional

Probab=96.07  E-value=0.057  Score=54.93  Aligned_cols=119  Identities=19%  Similarity=0.184  Sum_probs=62.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHc--------CCCCeEE-EEeC----------CHHHHHHHHCCCCCCCCCChHHHHHhhc
Q 011654            2 VKICCIGAGYVGGPTMAVIALK--------CPKIEVA-VVDI----------SVSRIAAWNGDQLPIYEPGLEDVVTQCR   62 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~--------~~G~~V~-~~D~----------~~~~v~~l~~~~~~~~e~~l~~l~~~~~   62 (480)
                      +||+|+|+|.||..++..|.++        +.+.+|+ ++|+          +.+++..+.+....+..  .        
T Consensus         3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~--~--------   72 (341)
T PRK06270          3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLAD--Y--------   72 (341)
T ss_pred             EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCccc--C--------
Confidence            6899999999999999988754        1135655 4574          33333333321100000  0        


Q ss_pred             CCCEEEecCHHHHh--ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccc-hHHHHHH
Q 011654           63 GRNLFFSTDIEKHV--AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVK-TAEAIEK  139 (480)
Q Consensus        63 ~~~l~~t~d~~~a~--~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g-t~~~l~~  139 (480)
                       .....+.++.+.+  .+.|+|+.|+|+..+..             +.+.+-+...+..|.-||..++-|.. +.++|.+
T Consensus        73 -~~~~~~~d~~ell~~~~~DvVvd~T~s~~~~~-------------~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~  138 (341)
T PRK06270         73 -PEGGGEISGLEVIRSVDADVVVEATPTNIETG-------------EPALSHCRKALERGKHVVTSNKGPLALAYKELKE  138 (341)
T ss_pred             -ccccccCCHHHHhhccCCCEEEECCcCccccc-------------chHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHH
Confidence             0011234777766  36899999988643310             11223334445567777754433332 2344555


Q ss_pred             HHHhc
Q 011654          140 ILTHN  144 (480)
Q Consensus       140 ~l~~~  144 (480)
                      ..++.
T Consensus       139 ~A~~~  143 (341)
T PRK06270        139 LAKKN  143 (341)
T ss_pred             HHHHc
Confidence            44443

>KOG3124 consensus Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=96.03  E-value=0.17  Score=48.56  Aligned_cols=147  Identities=18%  Similarity=0.234  Sum_probs=82.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcC--CCCeEEEEeCCHHHHHH-HHCCCCCCCCCChHHHHHhhcCCCEE-EecCHHHHhc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKC--PKIEVAVVDISVSRIAA-WNGDQLPIYEPGLEDVVTQCRGRNLF-FSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~--~G~~V~~~D~~~~~v~~-l~~~~~~~~e~~l~~l~~~~~~~~l~-~t~d~~~a~~   77 (480)
                      |+|++||.|+|-..++..+...+  +..+++.+-.+...... ++.                   .+.+ +.++ .++++
T Consensus         1 ~~~gfigag~ma~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~-------------------~g~~~~~~n-~~~~~   60 (267)
T KOG3124|consen    1 MKVGFIGAGNMAQALASGFVASGIIEANRIWASVQTERSLGLMFEA-------------------LGVKTVFTN-LEVLQ   60 (267)
T ss_pred             CceeEechhhhHHHHHhcccccCCCchhheeeecCchhhhhhhhhc-------------------CCceeeech-HHHHh
Confidence            79999999999999998887651  11234444332211111 221                   1232 3334 67789


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch-HHHHHHHHHhcCCCCceeE-eeC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT-AEAIEKILTHNSREIKYQI-LSN  155 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt-~~~l~~~l~~~~~g~~~~v-~~~  155 (480)
                      .+|++++||. |.              .+.+++.++......+++|+.   +-.|. ...+...+....  .-+.+ .-.
T Consensus        61 ~s~v~~~svK-p~--------------~i~~vls~~~~~~~~~~iivS---~aaG~tl~~l~~~l~~~~--rviRvmpNt  120 (267)
T KOG3124|consen   61 ASDVVFLSVK-PQ--------------VIESVLSEIKPKVSKGKIIVS---VAAGKTLSSLESKLSPPT--RVIRVMPNT  120 (267)
T ss_pred             hccceeEeec-ch--------------hHHHHhhcCccccccceEEEE---EeecccHHHHHHhcCCCC--ceEEecCCC
Confidence            9999999996 32              246677777776677887763   22333 333444443111  01112 235


Q ss_pred             CccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccC
Q 011654          156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWV  199 (480)
Q Consensus       156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~  199 (480)
                      |+..++|..         ++..+.  ....+..+.++++++..+
T Consensus       121 p~~v~eg~s---------v~~~g~--~~~~~D~~l~~~ll~~vG  153 (267)
T KOG3124|consen  121 PSVVGEGAS---------VYAIGC--HATNEDLELVEELLSAVG  153 (267)
T ss_pred             hhhhhcCcE---------EEeeCC--CcchhhHHHHHHHHHhcC
Confidence            666676654         222221  123445678888998875

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.01  E-value=0.023  Score=57.65  Aligned_cols=34  Identities=18%  Similarity=0.351  Sum_probs=30.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~   37 (480)
                      .+|.|||+|.+|..+|..|++.  |+ +++++|.|.-
T Consensus        25 ~~VlIiG~GglGs~va~~La~a--Gvg~i~lvD~D~v   59 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRA--GIGKLTIADRDYV   59 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCCEEEEEcCCcc
Confidence            4799999999999999999998  87 8999998863

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=96.00  E-value=0.034  Score=58.10  Aligned_cols=110  Identities=18%  Similarity=0.107  Sum_probs=69.3

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCC--C-CCCCceee
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMS--P-PASKQVNV  402 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~  402 (480)
                      +|+|+|+.|          ....++..|.+.|.+|.+||+.....+.   +........+|  .++..  . .....++.
T Consensus         2 kI~vIGlG~----------~G~~lA~~La~~G~~V~~~d~~~~~v~~---l~~g~~~~~e~--~l~~~~~~~~~~g~l~~   66 (411)
T TIGR03026         2 KIAVIGLGY----------VGLPLAALLADLGHEVTGVDIDQEKVDK---LNKGKSPIYEP--GLDELLAKALAAGRLRA   66 (411)
T ss_pred             EEEEECCCc----------hhHHHHHHHHhcCCeEEEEECCHHHHHH---hhcCCCCCCCC--CHHHHHHHhhhcCCeEE
Confidence            799999988          8899999999999999999986543221   21100000000  00000  0 00123667


Q ss_pred             ecCHHHhcccccEEEEEeccccc--cccc-------HHHHHHhcCCCCEEEEcCCCC
Q 011654          403 VWDAYQAAKDAHGVCILTEWDEF--KTLD-------YQKIFDNMRKPAYIFDGRNIL  450 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~~--~~~~-------~~~~~~~~~~~~~i~D~~~~~  450 (480)
                      .++..++++++|+++++++.+.-  ..+|       .+.+...+++..+|+|...+-
T Consensus        67 ~~~~~~~~~~advvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~  123 (411)
T TIGR03026        67 TTDYEDAIRDADVIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVP  123 (411)
T ss_pred             ECCHHHHHhhCCEEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCC
Confidence            78888999999999999998742  1122       234555666677999977543

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=95.99  E-value=0.023  Score=56.14  Aligned_cols=93  Identities=12%  Similarity=0.031  Sum_probs=63.5

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      +|+|+|+..          .+..++..|.++|.+|.+||+.....+.....+                     .+....+
T Consensus         2 ~I~IIG~G~----------mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g---------------------~~~~~~~   50 (279)
T PRK07417          2 KIGIVGLGL----------IGGSLGLDLRSLGHTVYGVSRRESTCERAIERG---------------------LVDEAST   50 (279)
T ss_pred             eEEEEeecH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC---------------------CcccccC
Confidence            699999754          778899999999999999998643222111111                     1111222


Q ss_pred             HHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCC
Q 011654          406 AYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNIL  450 (480)
Q Consensus       406 ~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~  450 (480)
                      ..++++++|+||++++-+...+. .+++...+++..+|.|..++-
T Consensus        51 ~~~~~~~aDlVilavp~~~~~~~-~~~l~~~l~~~~ii~d~~Svk   94 (279)
T PRK07417         51 DLSLLKDCDLVILALPIGLLLPP-SEQLIPALPPEAIVTDVGSVK   94 (279)
T ss_pred             CHhHhcCCCEEEEcCCHHHHHHH-HHHHHHhCCCCcEEEeCcchH
Confidence            33568999999999997765542 456767666667899987754

>KOG1683 consensus Hydroxyacyl-CoA dehydrogenase/enoyl-CoA hydratase [Lipid transport and metabolism]

Probab=95.98  E-value=0.0091  Score=59.75  Aligned_cols=106  Identities=21%  Similarity=0.205  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH-C---CC-CCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEEEEec
Q 011654           12 VGGPTMAVIALKCPKIEVAVVDISVSRIAAWN-G---DQ-LPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVFVSV   86 (480)
Q Consensus        12 ~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~-~---~~-~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvVii~V   86 (480)
                      ||..+|..+..+  |++|++.|.|..-++.-+ +   .. ....-..++..-......+++-+.|+.+ ++++|.++-+|
T Consensus         1 MG~gia~~~~~~--~i~~vl~~~n~~~~~~~~~~v~a~l~~~~~~~~~~~~~~~~~~~~L~~~~Dy~~-~~~~dmvieav   77 (380)
T KOG1683|consen    1 MGAGIAIVFILA--GIRTVLVDANVALLARGILQLAAHLNSEVKRGRLSGLEREKTKSNLVETLDYTG-FANADMVIEAV   77 (380)
T ss_pred             CcchHHHHHHHc--CCcEEEEeccHHHHHHhHHHHHHhhhHHHhhccccccchhhhhhhccccccccc-ccccceeccch
Confidence            789999999998  999999999976554211 1   00 0000000000000001123455667666 89999995554


Q ss_pred             cCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEE-EEecCCccch
Q 011654           87 NTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIV-VEKSTVPVKT  133 (480)
Q Consensus        87 ptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt  133 (480)
                                   ..|++-..+++.+|.+..++..+. .+.|+.+++.
T Consensus        78 -------------~edl~Lk~~l~~~le~v~~~~~i~gsntSs~~~~~  112 (380)
T KOG1683|consen   78 -------------FEDLELKHELFKSLEKVEPPKCIRGSNTSSLDINV  112 (380)
T ss_pred             -------------hhhHHHHHHHHHHHHhhcCCcceeeeccccCChHH
Confidence                         346777889999999999998866 5666666653

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.98  E-value=0.06  Score=56.79  Aligned_cols=41  Identities=12%  Similarity=0.238  Sum_probs=38.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      ++|.|+|+|.+|..++..|.+.  |++|+++|.++++++.+.+
T Consensus       232 ~~iiIiG~G~~g~~l~~~L~~~--~~~v~vid~~~~~~~~~~~  272 (453)
T PRK09496        232 KRVMIVGGGNIGYYLAKLLEKE--GYSVKLIERDPERAEELAE  272 (453)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHH
Confidence            6899999999999999999998  9999999999999988875

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.96  E-value=0.084  Score=55.97  Aligned_cols=39  Identities=21%  Similarity=0.114  Sum_probs=32.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAW   42 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l   42 (480)
                      +||.|||+|..|.+.|..|.+.  |++|+++|..+.....+
T Consensus        10 ~~i~viG~G~~G~~~a~~l~~~--G~~v~~~D~~~~~~~~l   48 (460)
T PRK01390         10 KTVAVFGLGGSGLATARALVAG--GAEVIAWDDNPASRAKA   48 (460)
T ss_pred             CEEEEEeecHhHHHHHHHHHHC--CCEEEEECCChhhHHHH
Confidence            4799999999999998888888  99999999876544333

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.96  E-value=0.04  Score=57.65  Aligned_cols=117  Identities=20%  Similarity=0.178  Sum_probs=69.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec--CHHHHhcc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST--DIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~--d~~~a~~~   78 (480)
                      .|||+|+|+|.-|.++|..|.+.  |++|+++|.++.. +.....  +..+            .++.+..  ...+...+
T Consensus         7 ~~kv~V~GLG~sG~a~a~~L~~~--G~~v~v~D~~~~~-~~~~~~--~~~~------------~~i~~~~g~~~~~~~~~   69 (448)
T COG0771           7 GKKVLVLGLGKSGLAAARFLLKL--GAEVTVSDDRPAP-EGLAAQ--PLLL------------EGIEVELGSHDDEDLAE   69 (448)
T ss_pred             CCEEEEEecccccHHHHHHHHHC--CCeEEEEcCCCCc-cchhhh--hhhc------------cCceeecCccchhcccc
Confidence            37999999999999999999998  9999999977654 111100  0001            1111111  11133678


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHH---------HHhhC-CCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARM---------IANVS-NSNKIVVEKSTVPVKTAEA-IEKILTHNS  145 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~---------i~~~l-~~~~iVi~~STv~~gt~~~-l~~~l~~~~  145 (480)
                      +|+|+.+=.-|           ++...++.+...         +.-.. .+..+|.++.|..-+||-. +..+|++.+
T Consensus        70 ~d~vV~SPGi~-----------~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G  136 (448)
T COG0771          70 FDLVVKSPGIP-----------PTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAG  136 (448)
T ss_pred             CCEEEECCCCC-----------CCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcC
Confidence            99998874333           333344444321         11122 2445787887876666554 667777654

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.92  E-value=0.015  Score=53.27  Aligned_cols=32  Identities=28%  Similarity=0.467  Sum_probs=29.3

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISV   36 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~   36 (480)
                      ||.|||+|.+|..+|..|++.  |. +++++|.+.
T Consensus         1 ~VlViG~GglGs~ia~~La~~--Gvg~i~lvD~D~   33 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARS--GVGNLKLVDFDV   33 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCE
Confidence            689999999999999999998  77 599999886

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.91  E-value=0.064  Score=52.72  Aligned_cols=79  Identities=23%  Similarity=0.271  Sum_probs=61.4

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+-++.+++|.|+|=|-         .-..+|+..|.++|+.|++.....                              
T Consensus       151 ~~i~l~Gk~vvVvGrS~---------iVGkPla~lL~~~~atVtichs~T------------------------------  191 (284)
T PRK14170        151 TGTQIEGKRAVVIGRSN---------IVGKPVAQLLLNENATVTIAHSRT------------------------------  191 (284)
T ss_pred             hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence            34468999999999643         567889999999999999876532                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            .++.+.++.||+||.++.++.|  +..+.+    ++.++|||.-
T Consensus       192 ------~~l~~~~~~ADIvI~AvG~~~~--i~~~~v----k~GavVIDvG  229 (284)
T PRK14170        192 ------KDLPQVAKEADILVVATGLAKF--VKKDYI----KPGAIVIDVG  229 (284)
T ss_pred             ------CCHHHHHhhCCEEEEecCCcCc--cCHHHc----CCCCEEEEcc
Confidence                  2456778999999999999998  455455    4457999975

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.90  E-value=0.064  Score=52.70  Aligned_cols=79  Identities=16%  Similarity=0.207  Sum_probs=60.9

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      ++-++++++|.|+|=|-         .-..+++..|..+|+.|++.....                              
T Consensus       150 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~atVtichs~T------------------------------  190 (282)
T PRK14169        150 YDIDVAGKRVVIVGRSN---------IVGRPLAGLMVNHDATVTIAHSKT------------------------------  190 (282)
T ss_pred             hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEECCCC------------------------------
Confidence            34467999999999543         466889999999999999865432                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            .++.+.++.||+||.++.++.|  ++.+.+    ++.++|||.-
T Consensus       191 ------~~l~~~~~~ADIvI~AvG~p~~--i~~~~v----k~GavVIDvG  228 (282)
T PRK14169        191 ------RNLKQLTKEADILVVAVGVPHF--IGADAV----KPGAVVIDVG  228 (282)
T ss_pred             ------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCcEEEEee
Confidence                  2456778999999999999998  455445    4456999975

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.87  E-value=0.11  Score=54.77  Aligned_cols=111  Identities=14%  Similarity=0.157  Sum_probs=65.3

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH--HHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-e--cCHHHHhc
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS--RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-S--TDIEKHVA   77 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t--~d~~~a~~   77 (480)
                      .|.|||+|..|.++|..|.+.  |++|+++|..+.  ..+.+.+.                 ..++.+ .  .+. +.+.
T Consensus         8 ~~~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~~~~~~~~l~~~-----------------~~g~~~~~~~~~~-~~~~   67 (448)
T PRK03803          8 LHIVVGLGKTGLSVVRFLARQ--GIPFAVMDSREQPPGLDTLARE-----------------FPDVELRCGGFDC-ELLV   67 (448)
T ss_pred             eEEEEeecHhHHHHHHHHHhC--CCeEEEEeCCCCchhHHHHHhh-----------------cCCcEEEeCCCCh-HHhc
Confidence            489999999999999999888  999999997643  11223220                 001222 1  232 3367


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHH---------HH-HhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MI-ANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS  145 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i-~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~  145 (480)
                      ++|+||++-.-|.           |-..+..+-+         ++ ...+ +..+|.+..|..-+||.. +..+|.+.+
T Consensus        68 ~~d~vV~sp~i~~-----------~~p~~~~a~~~~i~i~~~~el~~~~~-~~~~I~VTGT~GKTTTt~li~~iL~~~g  134 (448)
T PRK03803         68 QASEIIISPGLAL-----------DTPALRAAAAMGIEVIGDIELFAREA-KAPVIAITGSNGKSTVTTLVGEMAKAAG  134 (448)
T ss_pred             CCCEEEECCCCCC-----------CCHHHHHHHHCCCcEEEHHHHHHHhc-CCCEEEEECCCcHHHHHHHHHHHHHhcC
Confidence            8998877632221           2122333221         12 2223 446777777876666655 677887653

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=95.86  E-value=0.042  Score=55.32  Aligned_cols=95  Identities=18%  Similarity=0.158  Sum_probs=66.9

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChH-HHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTED-QIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      .+++++|+|+|+.          +.+..++..|...|.+|.++++..... .....                      .+
T Consensus        14 ~L~gktIgIIG~G----------smG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~----------------------~G   61 (330)
T PRK05479         14 LIKGKKVAIIGYG----------SQGHAHALNLRDSGVDVVVGLREGSKSWKKAEA----------------------DG   61 (330)
T ss_pred             hhCCCEEEEEeeH----------HHHHHHHHHHHHCCCEEEEEECCchhhHHHHHH----------------------CC
Confidence            4578999999984          588999999999999999987753322 11111                      12


Q ss_pred             eeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN  448 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~  448 (480)
                      +.. .+..++++.+|+|+++++-...+++-.+.+...+++.++|+=+.+
T Consensus        62 ~~~-~s~~eaa~~ADVVvLaVPd~~~~~V~~~~I~~~Lk~g~iL~~a~G  109 (330)
T PRK05479         62 FEV-LTVAEAAKWADVIMILLPDEVQAEVYEEEIEPNLKEGAALAFAHG  109 (330)
T ss_pred             Cee-CCHHHHHhcCCEEEEcCCHHHHHHHHHHHHHhcCCCCCEEEECCC
Confidence            333 378999999999999998766554433567777776556654443

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=95.85  E-value=0.049  Score=43.55  Aligned_cols=32  Identities=25%  Similarity=0.320  Sum_probs=27.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      ++++|+|.|.+|.+++..|...+ +.+|.+||+
T Consensus        24 ~~v~i~G~G~~g~~~a~~l~~~~-~~~v~v~~r   55 (86)
T cd05191          24 KTVVVLGAGEVGKGIAKLLADEG-GKKVVLCDR   55 (86)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcC
Confidence            58999999999999999999862 467888775

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=95.84  E-value=0.059  Score=56.71  Aligned_cols=100  Identities=13%  Similarity=0.155  Sum_probs=69.6

Q ss_pred             HHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEEC--CCCChHHHHHhhhccccCCCCCCCC
Q 011654          312 NRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYD--PQVTEDQIQRDLSMKKFDWDHPIHL  389 (480)
Q Consensus       312 ~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~D--P~~~~~~~~~~~~~~~~~~~~~~~~  389 (480)
                      +.+++.-+..+.+++|+|+|...          -...+++.|...|++|.++|  |........                
T Consensus       242 d~~~R~~~~~LaGKtVgVIG~G~----------IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~----------------  295 (476)
T PTZ00075        242 DGIFRATDVMIAGKTVVVCGYGD----------VGKGCAQALRGFGARVVVTEIDPICALQAAM----------------  295 (476)
T ss_pred             HHHHHhcCCCcCCCEEEEECCCH----------HHHHHHHHHHHCCCEEEEEeCCchhHHHHHh----------------
Confidence            33444434568999999999754          77889999999999999994  433211111                


Q ss_pred             CCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC
Q 011654          390 QPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI  449 (480)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~  449 (480)
                              .+..+ .+++++++.+|+|+++|..+.+  ++. +..+.|++.++++++-..
T Consensus       296 --------~G~~~-~~leell~~ADIVI~atGt~~i--I~~-e~~~~MKpGAiLINvGr~  343 (476)
T PTZ00075        296 --------EGYQV-VTLEDVVETADIFVTATGNKDI--ITL-EHMRRMKNNAIVGNIGHF  343 (476)
T ss_pred             --------cCcee-ccHHHHHhcCCEEEECCCcccc--cCH-HHHhccCCCcEEEEcCCC
Confidence                    11222 3678899999999999876543  343 445788988899998555

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=95.81  E-value=0.011  Score=55.89  Aligned_cols=69  Identities=17%  Similarity=0.394  Sum_probs=44.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~   78 (480)
                      .+|+|||+|.+|..++..+....+|+++++ +|.++++......+ .+                 +...+++.+.++  +
T Consensus        85 ~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g-~~-----------------v~~~~~l~~li~~~~  146 (213)
T PRK05472         85 WNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGG-IP-----------------VYHIDELEEVVKEND  146 (213)
T ss_pred             cEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCC-eE-----------------EcCHHHHHHHHHHCC
Confidence            479999999999999986432224888775 79887755321111 11                 111234455443  5


Q ss_pred             CcEEEEeccC
Q 011654           79 ADIVFVSVNT   88 (480)
Q Consensus        79 aDvVii~Vpt   88 (480)
                      .|.+++|+|.
T Consensus       147 iD~ViIa~P~  156 (213)
T PRK05472        147 IEIGILTVPA  156 (213)
T ss_pred             CCEEEEeCCc
Confidence            9999999885

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.81  E-value=0.063  Score=52.83  Aligned_cols=80  Identities=15%  Similarity=0.180  Sum_probs=62.2

Q ss_pred             HhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCC
Q 011654          317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPA  396 (480)
Q Consensus       317 ~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (480)
                      .++-++++++|.|+|=|-         .-..+++..|.++|+.|++.+...                             
T Consensus       151 ~~~i~l~Gk~vvViGrS~---------iVG~Pla~lL~~~~atVt~chs~t-----------------------------  192 (284)
T PRK14190        151 EYNIDISGKHVVVVGRSN---------IVGKPVGQLLLNENATVTYCHSKT-----------------------------  192 (284)
T ss_pred             HcCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEEeCCc-----------------------------
Confidence            344468999999999644         567889999999999999875321                             


Q ss_pred             CCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          397 SKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       397 ~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                             .++.+.++.||+||.++..+.|  ++.+.+    ++.++|||.-
T Consensus       193 -------~~l~~~~~~ADIvI~AvG~p~~--i~~~~i----k~gavVIDvG  230 (284)
T PRK14190        193 -------KNLAELTKQADILIVAVGKPKL--ITADMV----KEGAVVIDVG  230 (284)
T ss_pred             -------hhHHHHHHhCCEEEEecCCCCc--CCHHHc----CCCCEEEEee
Confidence                   2466778999999999999998  555555    4457999984

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.81  E-value=0.078  Score=52.23  Aligned_cols=79  Identities=14%  Similarity=0.153  Sum_probs=61.4

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      ++-++++++|.|+|=|-         .-..+++..|.++|+.|++.....                              
T Consensus       149 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~aTVtichs~T------------------------------  189 (287)
T PRK14173        149 YGIPLAGKEVVVVGRSN---------IVGKPLAALLLREDATVTLAHSKT------------------------------  189 (287)
T ss_pred             cCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence            34467999999999644         567899999999999999865432                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            .++.+.++.||.||.++.++.|-  +.+.+    ++.++|||.-
T Consensus       190 ------~~l~~~~~~ADIvIsAvGkp~~i--~~~~v----k~GavVIDVG  227 (287)
T PRK14173        190 ------QDLPAVTRRADVLVVAVGRPHLI--TPEMV----RPGAVVVDVG  227 (287)
T ss_pred             ------CCHHHHHhhCCEEEEecCCcCcc--CHHHc----CCCCEEEEcc
Confidence                  24567789999999999999985  44444    4457999975

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.78  E-value=0.14  Score=54.05  Aligned_cols=113  Identities=11%  Similarity=0.143  Sum_probs=67.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH--HHHHHCCCCCCCCCChHHHHHhhcCCCEEE--ec-CHHHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR--IAAWNGDQLPIYEPGLEDVVTQCRGRNLFF--ST-DIEKH   75 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~--t~-d~~~a   75 (480)
                      +++|.|||+|..|.+.++.|.+...|++|+++|.++..  .+.+.+                    ++++  .. +. +.
T Consensus         7 ~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~--------------------g~~~~~g~~~~-~~   65 (438)
T PRK04663          7 IKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPE--------------------DVELHSGGWNL-EW   65 (438)
T ss_pred             CceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhc--------------------CCEEEeCCCCh-HH
Confidence            46799999999999999999876423899999976421  122221                    1222  21 32 33


Q ss_pred             hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHH---------HHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654           76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS  145 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~  145 (480)
                      +.++|+||++-.-|.           +...++.+.+         ++...+.+..+|-+..|..-.||.. +..+|...+
T Consensus        66 ~~~~d~vV~SpgI~~-----------~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~~g  134 (438)
T PRK04663         66 LLEADLVVTNPGIAL-----------ATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKAAG  134 (438)
T ss_pred             hccCCEEEECCCCCC-----------CCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHHCC
Confidence            678998877643332           2223333322         2221122356777777877666665 567777653

>COG4408 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.78  E-value=0.76  Score=45.59  Aligned_cols=228  Identities=12%  Similarity=0.171  Sum_probs=132.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH----HHHHHHCCCCCCCCCChHHHHHhhcCCCEE---EecCHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS----RIAAWNGDQLPIYEPGLEDVVTQCRGRNLF---FSTDIE   73 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~----~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~---~t~d~~   73 (480)
                      |.++-++|+|.+..-+|.-+..++ ..++=.+++-..    -.++++.+. .++..+-.+..+. ..|+..   +..+++
T Consensus         4 m~~vLllGtGpvaIQlAv~l~~h~-d~~lg~~~r~s~rse~l~qala~~~-ql~l~~q~eahr~-leg~~~id~~~kd~a   80 (431)
T COG4408           4 MLPVLLLGTGPVAIQLAVDLSAHG-DARLGLYNRPSTRSERLKQALALTP-QLYLQGQGEAHRQ-LEGSVTIDCYIKDLA   80 (431)
T ss_pred             ccceeEeecCcHHHHHHHHHHhcc-CceeeccCCCCchhHHHHHHHhcCC-eEEEEeccHHHHh-hcCceehhHHHhhHH
Confidence            457899999999999999998873 456666765432    233444332 2433333333222 234442   455777


Q ss_pred             HHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHH-hhCCC-CCEEEEecCCccchHHHHHHHHHhcCCCCcee
Q 011654           74 KHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA-NVSNS-NKIVVEKSTVPVKTAEAIEKILTHNSREIKYQ  151 (480)
Q Consensus        74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~-~~l~~-~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~  151 (480)
                      ++..+-+.+|+|||+.               +..+++++|- +.++. .++|.+++|+..+.  .+...+.+.+  .+..
T Consensus        81 ~~~~dwqtlilav~aD---------------aY~dvlqqi~~e~L~~vk~viLiSptfGsn~--lv~~~mnk~~--~dae  141 (431)
T COG4408          81 QAVGDWQTLILAVPAD---------------AYYDVLQQIPWEALPQVKSVILISPTFGSNL--LVQNLMNKAG--RDAE  141 (431)
T ss_pred             HhhchhheEEEEeecH---------------HHHHHHhcCCHhHhccccEEEEecccccccH--HHHHHHhhhC--CCce
Confidence            7777889999999863               2355666652 22332 35666666765442  2333333332  3444


Q ss_pred             EeeCCccc---------cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhh------
Q 011654          152 ILSNPEFL---------AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSK------  216 (480)
Q Consensus       152 v~~~Pe~~---------~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~K------  216 (480)
                      |++-....         .|-++..... ..+|.+|+.-.  +....+.+..++....- ....+.++..||.--      
T Consensus       142 ViS~SsY~~dTk~id~~~p~~alTkav-KkriYlgs~~~--ns~~~e~l~~v~aq~~I-~v~~~esp~~AEtrnit~YVH  217 (431)
T COG4408         142 VISLSSYYADTKYIDAEQPNRALTKAV-KKRIYLGSQHG--NSGSAEMLTAVLAQHGI-DVEPCESPLAAETRNITLYVH  217 (431)
T ss_pred             EEEeehhcccceeecccCcchHHHHHH-hHheeeccCCC--CChHHHHHHHHHHhcCC-ceEEcCChhhhhhcccceeec
Confidence            43211111         1112211111 12677886532  45678889999998742 334556777777431      


Q ss_pred             --hH----------------------------HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          217 --LA----------------------------ANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       217 --l~----------------------------~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                        ++                            .-+...-.-..+.|++++..++|+..-.++..++.+
T Consensus       218 pPlflndfsL~aif~~~~~p~yvYKlyPEGPIt~~lIr~mr~lwke~m~ll~r~~ve~iNLLrFl~dd  285 (431)
T COG4408         218 PPLFLNDFSLQAIFYPEQRPQYVYKLYPEGPITPALIRDMRGLWKEYMRLLNRLGVEEINLLRFLNDD  285 (431)
T ss_pred             CcchhhhhHHHHHhCCcCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCchhHHHHhccC
Confidence              00                            112333445688999999999999999999999876

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=95.77  E-value=0.032  Score=50.10  Aligned_cols=105  Identities=11%  Similarity=0.095  Sum_probs=63.1

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      ||+|+|-          .+-+..++..|..+|.+|.+|.+.-..-+..+...   . .....+   . .....++...++
T Consensus         1 KI~ViGa----------G~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~---~-n~~~~~---~-~~l~~~i~~t~d   62 (157)
T PF01210_consen    1 KIAVIGA----------GNWGTALAALLADNGHEVTLWGRDEEQIEEINETR---Q-NPKYLP---G-IKLPENIKATTD   62 (157)
T ss_dssp             EEEEESS----------SHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHT---S-ETTTST---T-SBEETTEEEESS
T ss_pred             CEEEECc----------CHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhC---C-CCCCCC---C-cccCcccccccC
Confidence            6889986          45889999999999999999999653222111111   0 000000   0 122356778899


Q ss_pred             HHHhcccccEEEEEecccccccccHHHHHHhcCCCC-EEEEcCCC
Q 011654          406 AYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPA-YIFDGRNI  449 (480)
Q Consensus       406 ~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~-~i~D~~~~  449 (480)
                      ++++++++|++++.++-..+++ -.+++....+... +|+=++++
T Consensus        63 l~~a~~~ad~IiiavPs~~~~~-~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   63 LEEALEDADIIIIAVPSQAHRE-VLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             HHHHHTT-SEEEE-S-GGGHHH-HHHHHTTTSHTT-EEEETS-SE
T ss_pred             HHHHhCcccEEEecccHHHHHH-HHHHHhhccCCCCEEEEecCCc
Confidence            9999999999999999887765 3345554443333 44433444

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=95.74  E-value=0.1  Score=53.28  Aligned_cols=41  Identities=29%  Similarity=0.319  Sum_probs=33.7

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      +|.|+|+|.+|+-.++.+... ...+|++.|+++++++..++
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~  211 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKE  211 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH
Confidence            689999999999876655555 23689999999999998876

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.73  E-value=0.087  Score=51.73  Aligned_cols=78  Identities=15%  Similarity=0.085  Sum_probs=60.5

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +-++++++|.|+|=|.         .-..+|+..|.++++.|.+.....                               
T Consensus       152 ~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~AtVtichs~T-------------------------------  191 (282)
T PRK14182        152 RVDPKGKRALVVGRSN---------IVGKPMAMMLLERHATVTIAHSRT-------------------------------  191 (282)
T ss_pred             CCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC-------------------------------
Confidence            3467899999999643         567889999999999999976542                               


Q ss_pred             ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                           .++.+.++.||+||.++..+.|  ++.+.+    ++.++|||.-
T Consensus       192 -----~nl~~~~~~ADIvI~AvGk~~~--i~~~~i----k~gaiVIDvG  229 (282)
T PRK14182        192 -----ADLAGEVGRADILVAAIGKAEL--VKGAWV----KEGAVVIDVG  229 (282)
T ss_pred             -----CCHHHHHhhCCEEEEecCCcCc--cCHHHc----CCCCEEEEee
Confidence                 2356678999999999999997  444444    4456999975

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.73  E-value=0.084  Score=52.00  Aligned_cols=79  Identities=16%  Similarity=0.124  Sum_probs=60.8

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+-++++++|.|+|-|.         .-..+|+..|.++|+.|.+.+-.                               
T Consensus       152 ~~i~l~Gk~vvViGrs~---------iVGkPla~lL~~~~atVt~~hs~-------------------------------  191 (285)
T PRK14189        152 IGIPLRGAHAVVIGRSN---------IVGKPMAMLLLQAGATVTICHSK-------------------------------  191 (285)
T ss_pred             cCCCCCCCEEEEECCCC---------ccHHHHHHHHHHCCCEEEEecCC-------------------------------
Confidence            33467999999999754         45789999999999999975321                               


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                           ..++.+.++.||.||.+++.+.|  ++.    +.+++.++|||.-
T Consensus       192 -----t~~l~~~~~~ADIVV~avG~~~~--i~~----~~ik~gavVIDVG  230 (285)
T PRK14189        192 -----TRDLAAHTRQADIVVAAVGKRNV--LTA----DMVKPGATVIDVG  230 (285)
T ss_pred             -----CCCHHHHhhhCCEEEEcCCCcCc--cCH----HHcCCCCEEEEcc
Confidence                 12466778999999999999987  444    3456667999975

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=95.71  E-value=0.018  Score=53.34  Aligned_cols=112  Identities=16%  Similarity=0.107  Sum_probs=62.9

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCC---CCCCCceee
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMS---PPASKQVNV  402 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~  402 (480)
                      ||+|+|+.|          -.+.++-.|.++|.+|.+||..-...+.   +........+|  .++..   .....++.+
T Consensus         2 ~I~ViGlGy----------vGl~~A~~lA~~G~~V~g~D~~~~~v~~---l~~g~~p~~E~--~l~~ll~~~~~~~~l~~   66 (185)
T PF03721_consen    2 KIAVIGLGY----------VGLPLAAALAEKGHQVIGVDIDEEKVEA---LNNGELPIYEP--GLDELLKENVSAGRLRA   66 (185)
T ss_dssp             EEEEE--ST----------THHHHHHHHHHTTSEEEEE-S-HHHHHH---HHTTSSSS-CT--THHHHHHHHHHTTSEEE
T ss_pred             EEEEECCCc----------chHHHHHHHHhCCCEEEEEeCChHHHHH---Hhhcccccccc--chhhhhccccccccchh
Confidence            899999999          7799999999999999999996543222   22111111111  00000   000246778


Q ss_pred             ecCHHHhcccccEEEEEeccccccc--ccHH-------HHHHhcCCCCEEEEcCCCCChH
Q 011654          403 VWDAYQAAKDAHGVCILTEWDEFKT--LDYQ-------KIFDNMRKPAYIFDGRNILDVE  453 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~~~~--~~~~-------~~~~~~~~~~~i~D~~~~~~~~  453 (480)
                      .++.+++++++|+++|+++-|.-.+  .|..       .+...+++.. +|=.+..+.+.
T Consensus        67 t~~~~~ai~~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~-lvV~~STvppG  125 (185)
T PF03721_consen   67 TTDIEEAIKDADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGD-LVVIESTVPPG  125 (185)
T ss_dssp             ESEHHHHHHH-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCE-EEEESSSSSTT
T ss_pred             hhhhhhhhhccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcc-eEEEccEEEEe
Confidence            8899999999999999988765432  3433       5555556654 44455555543

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.70  E-value=0.084  Score=52.28  Aligned_cols=79  Identities=15%  Similarity=0.182  Sum_probs=61.0

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      ++-++++++|.|+|=|-         .-..+|+..|.++|+.|.+.....                              
T Consensus       152 ~~i~l~Gk~vvVIGrS~---------iVGkPla~lL~~~~atVtv~hs~T------------------------------  192 (297)
T PRK14186        152 QQIDIAGKKAVVVGRSI---------LVGKPLALMLLAANATVTIAHSRT------------------------------  192 (297)
T ss_pred             hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence            34468999999999543         467889999999999999875432                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            .++.+.++.||.||.+++.+.|  ++.+++    ++.++|||.-
T Consensus       193 ------~~l~~~~~~ADIvIsAvGkp~~--i~~~~i----k~gavVIDvG  230 (297)
T PRK14186        193 ------QDLASITREADILVAAAGRPNL--IGAEMV----KPGAVVVDVG  230 (297)
T ss_pred             ------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCCEEEEec
Confidence                  2456678999999999999998  455455    3456999975

>PRK06349 homoserine dehydrogenase; Provisional

Probab=95.69  E-value=0.046  Score=57.36  Aligned_cols=68  Identities=22%  Similarity=0.359  Sum_probs=45.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcC------C--CCeE-EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKC------P--KIEV-AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDI   72 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~------~--G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~   72 (480)
                      +||+|||+|.||..++..|.++.      .  +.+| .++|+++++.+.+.     .              ....+++|+
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~-----~--------------~~~~~~~d~   64 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVD-----L--------------PGILLTTDP   64 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCC-----C--------------cccceeCCH
Confidence            58999999999999998886531      1  2344 45688876532111     0              123467888


Q ss_pred             HHHhc--cCcEEEEeccC
Q 011654           73 EKHVA--EADIVFVSVNT   88 (480)
Q Consensus        73 ~~a~~--~aDvVii~Vpt   88 (480)
                      ++.+.  +.|+|+.|+++
T Consensus        65 ~~ll~d~~iDvVve~tg~   82 (426)
T PRK06349         65 EELVNDPDIDIVVELMGG   82 (426)
T ss_pred             HHHhhCCCCCEEEECCCC
Confidence            88774  57999999764

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.68  E-value=0.084  Score=51.88  Aligned_cols=79  Identities=15%  Similarity=0.111  Sum_probs=61.0

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+-++++++|.|+|=|.         .-..+|+..|.++|+.|.+.+-..                              
T Consensus       152 y~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~ATVt~chs~T------------------------------  192 (282)
T PRK14180        152 YGIKTEGAYAVVVGASN---------VVGKPVSQLLLNAKATVTTCHRFT------------------------------  192 (282)
T ss_pred             hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEEcCCC------------------------------
Confidence            44578999999999644         567889999999999999875432                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            .++.+-++.||+||.++.++.|  +..+.+    ++.++|||.-
T Consensus       193 ------~dl~~~~k~ADIvIsAvGkp~~--i~~~~v----k~gavVIDvG  230 (282)
T PRK14180        193 ------TDLKSHTTKADILIVAVGKPNF--ITADMV----KEGAVVIDVG  230 (282)
T ss_pred             ------CCHHHHhhhcCEEEEccCCcCc--CCHHHc----CCCcEEEEec
Confidence                  2455668999999999999998  555455    4457999974

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.68  E-value=0.14  Score=54.18  Aligned_cols=33  Identities=27%  Similarity=0.247  Sum_probs=29.9

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      ||.|||+|..|.+.|..|+++  |++|+++|+++.
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~--G~~V~~~D~~~~   34 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQ--GWEVVVSDRNDS   34 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHC--CCEEEEECCCCc
Confidence            799999999999999888888  999999998653

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.67  E-value=0.089  Score=51.60  Aligned_cols=78  Identities=18%  Similarity=0.285  Sum_probs=60.8

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      ++-++++++|.|+|=|-         .-..+|+..|..+|+.|.+.+-..                              
T Consensus       152 ~~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~AtVt~chs~T------------------------------  192 (278)
T PRK14172        152 LNIDIEGKEVVVIGRSN---------IVGKPVAQLLLNENATVTICHSKT------------------------------  192 (278)
T ss_pred             hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence            34468999999999643         467889999999999999876432                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEc
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDG  446 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~  446 (480)
                            .++.+.+++||+||.++..+.|  ++.+.+    ++.++|||.
T Consensus       193 ------~~l~~~~~~ADIvIsAvGkp~~--i~~~~i----k~gavVIDv  229 (278)
T PRK14172        193 ------KNLKEVCKKADILVVAIGRPKF--IDEEYV----KEGAIVIDV  229 (278)
T ss_pred             ------CCHHHHHhhCCEEEEcCCCcCc--cCHHHc----CCCcEEEEe
Confidence                  2456778999999999999998  555455    445799998

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=95.67  E-value=0.051  Score=53.93  Aligned_cols=101  Identities=17%  Similarity=0.157  Sum_probs=76.3

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +-.+.+++++|+|+.-          -.-+++..+..-|..|..|||+.+.+....                       .
T Consensus       141 G~el~GKTLgvlG~Gr----------IGseVA~r~k~~gm~vI~~dpi~~~~~~~a-----------------------~  187 (406)
T KOG0068|consen  141 GWELRGKTLGVLGLGR----------IGSEVAVRAKAMGMHVIGYDPITPMALAEA-----------------------F  187 (406)
T ss_pred             eeEEeccEEEEeeccc----------chHHHHHHHHhcCceEEeecCCCchHHHHh-----------------------c
Confidence            4467899999999854          346788888999999999999998765432                       2


Q ss_pred             ceeeecCHHHhcccccEEEEEecc-cccccccHHHHHHhcCCCCEEEEcCC--CCChH
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEW-DEFKTLDYQKIFDNMRKPAYIFDGRN--ILDVE  453 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~  453 (480)
                      ++++. +++|.+..||-+.++++- |+-+.+=-.+-+..|++...||.+.+  ++|..
T Consensus       188 gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~  244 (406)
T KOG0068|consen  188 GVQLV-SLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEP  244 (406)
T ss_pred             cceee-eHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechH
Confidence            34443 789999999999999887 55555433455678888878888754  66643

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=95.66  E-value=0.055  Score=57.19  Aligned_cols=110  Identities=10%  Similarity=0.100  Sum_probs=76.9

Q ss_pred             HHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecCHHHhccc---ccEEEEEecc
Q 011654          346 AIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKD---AHGVCILTEW  422 (480)
Q Consensus       346 ~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~---ad~vvi~t~h  422 (480)
                      ...+++.|.++|++|.+||-.....+......                 +...++..++|++++++.   +|+|+++...
T Consensus         2 G~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~-----------------g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~   64 (459)
T PRK09287          2 GKNLALNIASHGYTVAVYNRTPEKTDEFLAEE-----------------GKGKKIVPAYTLEEFVASLEKPRKILLMVKA   64 (459)
T ss_pred             cHHHHHHHHhCCCeEEEECCCHHHHHHHHHhh-----------------CCCCCeEeeCCHHHHHhhCCCCCEEEEECCC
Confidence            35688999999999999999755433222100                 001236677899998875   8999999988


Q ss_pred             cccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecCCCCcC
Q 011654          423 DEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIGKPLDPW  472 (480)
Q Consensus       423 ~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~~~~~~  472 (480)
                      .+--+--++.+...+.+..+|||+.|...+.      ++++.|+.|.+.|...-++
T Consensus        65 g~~v~~Vi~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         65 GAPVDAVIEQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             chHHHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            7533322356777777667999999987643      3446799999998765444

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.66  E-value=0.054  Score=53.54  Aligned_cols=53  Identities=19%  Similarity=0.351  Sum_probs=42.3

Q ss_pred             cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|.|||.|. +|.|+|..|...  |.+|+++++..                                 .++.+.++++|
T Consensus       160 k~vvViG~gg~vGkpia~~L~~~--gatVtv~~~~t---------------------------------~~L~~~~~~aD  204 (283)
T PRK14192        160 KHAVVVGRSAILGKPMAMMLLNA--NATVTICHSRT---------------------------------QNLPELVKQAD  204 (283)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhC--CCEEEEEeCCc---------------------------------hhHHHHhccCC
Confidence            4799999997 999999999988  78999998621                                 12344468899


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||.|++.|
T Consensus       205 IvI~AtG~~  213 (283)
T PRK14192        205 IIVGAVGKP  213 (283)
T ss_pred             EEEEccCCC
Confidence            999998643

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.65  E-value=0.19  Score=52.97  Aligned_cols=33  Identities=18%  Similarity=0.137  Sum_probs=30.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      ++|.|+|+|.+|.++|..|++.  |++|+++|.+.
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~--G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKL--GANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEcCCC
Confidence            4789999999999999999998  99999999865

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.64  E-value=0.13  Score=55.20  Aligned_cols=33  Identities=18%  Similarity=0.127  Sum_probs=29.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .+|.|+|+|..|.++|..|.+.  |++|+++|.+.
T Consensus         8 ~~i~v~G~G~sG~s~a~~L~~~--G~~v~~~D~~~   40 (498)
T PRK02006          8 PMVLVLGLGESGLAMARWCARH--GARLRVADTRE   40 (498)
T ss_pred             CEEEEEeecHhHHHHHHHHHHC--CCEEEEEcCCC
Confidence            4799999999999999999988  99999999754

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.63  E-value=0.062  Score=54.85  Aligned_cols=80  Identities=24%  Similarity=0.338  Sum_probs=47.8

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCC-ChHHHHHhhcCCCEEEe-cCHHHHhcc
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEP-GLEDVVTQCRGRNLFFS-TDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~-~l~~l~~~~~~~~l~~t-~d~~~a~~~   78 (480)
                      +||+|+| .|++|..+...|.++ |..+++++..+++...+......++.+. ++..   .  ...+.+. .++++ +.+
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~-p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~---~--~~~~~v~~~~~~~-~~~   76 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANH-PWFEVTALAASERSAGKTYGEAVRWQLDGPIPE---E--VADMEVVSTDPEA-VDD   76 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcC-CCceEEEEEcChhhcCCcccccccccccccccc---c--ccceEEEeCCHHH-hcC
Confidence            6899998 899999999999875 5679999866654432211111111000 0000   0  0123332 34444 689


Q ss_pred             CcEEEEeccC
Q 011654           79 ADIVFVSVNT   88 (480)
Q Consensus        79 aDvVii~Vpt   88 (480)
                      +|+||.|+|.
T Consensus        77 ~DvVf~a~p~   86 (349)
T PRK08664         77 VDIVFSALPS   86 (349)
T ss_pred             CCEEEEeCCh
Confidence            9999999874

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.62  E-value=0.091  Score=51.63  Aligned_cols=79  Identities=15%  Similarity=0.138  Sum_probs=60.8

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+-++++++|.|+|=|-         .-..+|+..|.++|+.|++..-..                              
T Consensus       151 y~i~l~Gk~vvVvGrS~---------iVGkPla~lL~~~~atVt~chs~T------------------------------  191 (282)
T PRK14166        151 YEIDLEGKDAVIIGASN---------IVGRPMATMLLNAGATVSVCHIKT------------------------------  191 (282)
T ss_pred             hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence            34467999999999644         466889999999999999765432                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            .++.+.++.||.||.++.++.|  ++...+    ++.++|||.-
T Consensus       192 ------~nl~~~~~~ADIvIsAvGkp~~--i~~~~v----k~GavVIDvG  229 (282)
T PRK14166        192 ------KDLSLYTRQADLIIVAAGCVNL--LRSDMV----KEGVIVVDVG  229 (282)
T ss_pred             ------CCHHHHHhhCCEEEEcCCCcCc--cCHHHc----CCCCEEEEec
Confidence                  2456778999999999999998  454444    4457999975

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=95.62  E-value=0.093  Score=49.35  Aligned_cols=67  Identities=9%  Similarity=0.116  Sum_probs=45.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec-C-HHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS-RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST-D-IEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~-d-~~~a~~~   78 (480)
                      .+|.|||.|.+|..-+..|.+.  |.+|++++.+.. .++.+.+.                  ++++... + ..+.+.+
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~~~------------------~~i~~~~~~~~~~dl~~   69 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLAEQ------------------GGITWLARCFDADILEG   69 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHHHc------------------CCEEEEeCCCCHHHhCC
Confidence            4799999999999999999998  899999987542 23333221                  2232211 1 1223788


Q ss_pred             CcEEEEeccC
Q 011654           79 ADIVFVSVNT   88 (480)
Q Consensus        79 aDvVii~Vpt   88 (480)
                      +++||+|++.
T Consensus        70 ~~lVi~at~d   79 (205)
T TIGR01470        70 AFLVIAATDD   79 (205)
T ss_pred             cEEEEECCCC
Confidence            9999988543

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.60  E-value=0.1  Score=48.32  Aligned_cols=100  Identities=14%  Similarity=0.065  Sum_probs=63.5

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      ++++++|.|+|=|-         .-..+|+..|.++|+.|.+.|-..-..- ...         ...+|...   ...  
T Consensus        59 ~l~GK~vvVIGrS~---------iVGkPla~lL~~~~AtVti~~~~~~~~~-~~~---------~~~~hs~t---~~~--  114 (197)
T cd01079          59 RLYGKTITIINRSE---------VVGRPLAALLANDGARVYSVDINGIQVF-TRG---------ESIRHEKH---HVT--  114 (197)
T ss_pred             CCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEEecCccccc-ccc---------cccccccc---ccc--
Confidence            67999999999643         5678899999999999999974332110 000         00001000   000  


Q ss_pred             eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI  449 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~  449 (480)
                      ....++.+.++.||+||.++..++|+ +..+++    ++.++|||.---
T Consensus       115 ~~~~~l~~~~~~ADIVIsAvG~~~~~-i~~d~i----k~GavVIDVGi~  158 (197)
T cd01079         115 DEEAMTLDCLSQSDVVITGVPSPNYK-VPTELL----KDGAICINFASI  158 (197)
T ss_pred             chhhHHHHHhhhCCEEEEccCCCCCc-cCHHHc----CCCcEEEEcCCC
Confidence            00112567889999999999999984 344444    445799997543

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.58  E-value=0.086  Score=46.42  Aligned_cols=69  Identities=22%  Similarity=0.372  Sum_probs=46.5

Q ss_pred             EEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            3 KICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +|.|+|- ..+|.++|..|.+.  |..|+..+.+                                 |.++++.+++||+
T Consensus        30 ~v~VvGrs~~vG~pla~lL~~~--gatV~~~~~~---------------------------------t~~l~~~v~~ADI   74 (140)
T cd05212          30 KVLVVGRSGIVGAPLQCLLQRD--GATVYSCDWK---------------------------------TIQLQSKVHDADV   74 (140)
T ss_pred             EEEEECCCchHHHHHHHHHHHC--CCEEEEeCCC---------------------------------CcCHHHHHhhCCE
Confidence            5677763 55677777777766  6677766642                                 1256677899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK  126 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~  126 (480)
                      |+.+++.+.         ..+           .+.+++|++|++.
T Consensus        75 VvsAtg~~~---------~i~-----------~~~ikpGa~Vidv   99 (140)
T cd05212          75 VVVGSPKPE---------KVP-----------TEWIKPGATVINC   99 (140)
T ss_pred             EEEecCCCC---------ccC-----------HHHcCCCCEEEEc
Confidence            999998652         111           2347899998854

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.58  E-value=0.056  Score=53.21  Aligned_cols=71  Identities=20%  Similarity=0.356  Sum_probs=54.2

Q ss_pred             cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|.|||-+. +|.|+|..|..+  |..|++++..                                 |.++.+..++||
T Consensus       165 k~vvViGrs~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD  209 (287)
T PRK14176        165 KNAVIVGHSNVVGKPMAAMLLNR--NATVSVCHVF---------------------------------TDDLKKYTLDAD  209 (287)
T ss_pred             CEEEEECCCcccHHHHHHHHHHC--CCEEEEEecc---------------------------------CCCHHHHHhhCC
Confidence            4799999988 999999999988  8899998841                                 235566678999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +||.+++-|.-.         .           ...+++|++||+.+
T Consensus       210 Ivv~AvG~p~~i---------~-----------~~~vk~gavVIDvG  236 (287)
T PRK14176        210 ILVVATGVKHLI---------K-----------ADMVKEGAVIFDVG  236 (287)
T ss_pred             EEEEccCCcccc---------C-----------HHHcCCCcEEEEec
Confidence            999998765211         1           12578899998643

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=95.57  E-value=0.074  Score=49.21  Aligned_cols=88  Identities=22%  Similarity=0.279  Sum_probs=57.5

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe--cC----HHH
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS--TD----IEK   74 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t--~d----~~~   74 (480)
                      .+|+|||- ..+|.|+|..|.++  |..|+.+|++.-..  ...+.. .               +-+.|  .+    +.+
T Consensus        63 K~vvVIGrS~iVGkPla~lL~~~--~AtVti~~~~~~~~--~~~~~~-~---------------~hs~t~~~~~~~~l~~  122 (197)
T cd01079          63 KTITIINRSEVVGRPLAALLAND--GARVYSVDINGIQV--FTRGES-I---------------RHEKHHVTDEEAMTLD  122 (197)
T ss_pred             CEEEEECCCccchHHHHHHHHHC--CCEEEEEecCcccc--cccccc-c---------------ccccccccchhhHHHH
Confidence            47999995 56799999999988  89999999764322  111100 0               00111  12    556


Q ss_pred             HhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           75 HVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        75 a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      .++.||+||.+++.|--        ...           ...+++|++||+.++
T Consensus       123 ~~~~ADIVIsAvG~~~~--------~i~-----------~d~ik~GavVIDVGi  157 (197)
T cd01079         123 CLSQSDVVITGVPSPNY--------KVP-----------TELLKDGAICINFAS  157 (197)
T ss_pred             HhhhCCEEEEccCCCCC--------ccC-----------HHHcCCCcEEEEcCC
Confidence            68999999999987521        011           234678999997554

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.57  E-value=0.082  Score=52.38  Aligned_cols=121  Identities=10%  Similarity=0.059  Sum_probs=70.9

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhh-h---ccccCCCCCCCCCCCCCCCCCce
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDL-S---MKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      ++|+|+|+..          ....++..|.++|.+|.+||+.....+..... .   ..+.....-.  .........++
T Consensus         2 ~~V~VIG~G~----------mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~i   69 (288)
T PRK09260          2 EKLVVVGAGV----------MGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLT--EAARQAALARL   69 (288)
T ss_pred             cEEEEECccH----------HHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCC--HHHHHHHHhCe
Confidence            5899999865          88999999999999999999975442221110 0   0000000000  00000011346


Q ss_pred             eeecCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCCCCChHHHhh
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRNILDVEKLRE  457 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~  457 (480)
                      +.+++++++++++|+|+.++.-+. .+..-++++.+.+++..+|......+++..+.+
T Consensus        70 ~~~~~~~~~~~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~~~l~~  127 (288)
T PRK09260         70 SYSLDLKAAVADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSPTEIAS  127 (288)
T ss_pred             EEeCcHHHhhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence            677889999999999999887653 232233456666666555534444466665543

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=95.54  E-value=0.03  Score=56.39  Aligned_cols=85  Identities=14%  Similarity=0.221  Sum_probs=54.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCC-CCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGD-QLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|+|.+|...+..+... ++.+|++ .|.+++....+... +...+. ...+........++....++++.+.++|+
T Consensus         1 VaInG~GrIGr~varav~~~-~d~elVaVnD~~~~~~a~lA~~lgyds~~-~~~~~~~~~~~~~l~v~g~~eeLl~~vDi   78 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQ-DDMKLVGVTKTSPDFEAYRAKELGIPVYA-ASEEFIPRFEEAGIEVAGTLEDLLEKVDI   78 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhC-CCcEEEEEecCChHHHHHHHHHhCCCEEe-ecCCcceEeccCceEecCCHHHHhhcCCE
Confidence            69999999999999998765 5778765 67777754444321 111111 00000000112346667788998899999


Q ss_pred             EEEeccCCC
Q 011654           82 VFVSVNTPT   90 (480)
Q Consensus        82 Vii~Vptp~   90 (480)
                      |+.|+|...
T Consensus        79 Vve~Tp~~~   87 (333)
T TIGR01546        79 VVDATPGGI   87 (333)
T ss_pred             EEECCCCCC
Confidence            999987644

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=95.54  E-value=0.027  Score=46.13  Aligned_cols=66  Identities=18%  Similarity=0.198  Sum_probs=45.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc--
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIE-VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE--   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~--   78 (480)
                      .+|+|+|+|..|..++..+.+. .|+. +.++|.+++++..-.                    +++.+..+.+++.+.  
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~-~g~~i~~~~dv~~~~~G~~i--------------------~gipV~~~~~~l~~~~~   62 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSM-RGFGIVAVFDVDPEKIGKEI--------------------GGIPVYGSMDELEEFIE   62 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHH-HCECEEEEEEECTTTTTSEE--------------------TTEEEESSHHHHHHHCT
T ss_pred             CeEEEECCCCcHHHHHHhHHHH-cCCCCEEEEEcCCCccCcEE--------------------CCEEeeccHHHhhhhhC
Confidence            3799999999999998655543 2665 567899987542111                    245666666665555  


Q ss_pred             CcEEEEeccC
Q 011654           79 ADIVFVSVNT   88 (480)
Q Consensus        79 aDvVii~Vpt   88 (480)
                      .|+-++|||.
T Consensus        63 i~iaii~VP~   72 (96)
T PF02629_consen   63 IDIAIITVPA   72 (96)
T ss_dssp             TSEEEEES-H
T ss_pred             CCEEEEEcCH
Confidence            9999999984

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.52  E-value=0.053  Score=53.19  Aligned_cols=71  Identities=28%  Similarity=0.521  Sum_probs=53.3

Q ss_pred             cEEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAG-YVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|.|||-+ .+|.|+|..|.++  |..|+.....                                 |.++.+.++.||
T Consensus       158 k~vvViGrS~~VG~Pla~lL~~~--~AtVti~hs~---------------------------------T~~l~~~~~~AD  202 (281)
T PRK14183        158 KDVCVVGASNIVGKPMAALLLNA--NATVDICHIF---------------------------------TKDLKAHTKKAD  202 (281)
T ss_pred             CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CcCHHHHHhhCC
Confidence            479999988 8999999999988  8899876531                                 234556688999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +||.+++.|--         ..           ..++++|.+||+.+
T Consensus       203 IvV~AvGkp~~---------i~-----------~~~vk~gavvIDvG  229 (281)
T PRK14183        203 IVIVGVGKPNL---------IT-----------EDMVKEGAIVIDIG  229 (281)
T ss_pred             EEEEecCcccc---------cC-----------HHHcCCCcEEEEee
Confidence            99999986521         11           23467899998643

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=95.52  E-value=0.018  Score=60.00  Aligned_cols=34  Identities=35%  Similarity=0.434  Sum_probs=31.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      |.+|.|||.|.+|+++|..|++.  |++|+++|++.
T Consensus         1 ~~~vvIIGaG~~G~~~A~~La~~--g~~V~vle~~~   34 (410)
T PRK12409          1 MSHIAVIGAGITGVTTAYALAQR--GYQVTVFDRHR   34 (410)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEeCCC
Confidence            56999999999999999999998  99999999864

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.50  E-value=0.11  Score=50.96  Aligned_cols=79  Identities=15%  Similarity=0.109  Sum_probs=61.6

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+-++.+++|.|+|=|-         .-..+|+..|.++|+.|++.+...                              
T Consensus       153 y~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~atVt~chs~T------------------------------  193 (284)
T PRK14177        153 YGIDVTGKNAVVVGRSP---------ILGKPMAMLLTEMNATVTLCHSKT------------------------------  193 (284)
T ss_pred             hCCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence            34478999999999643         567889999999999999977532                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            .++.+.++.||+||.++..+.|  ++.+.+    ++.++|||.-
T Consensus       194 ------~~l~~~~~~ADIvIsAvGk~~~--i~~~~i----k~gavVIDvG  231 (284)
T PRK14177        194 ------QNLPSIVRQADIIVGAVGKPEF--IKADWI----SEGAVLLDAG  231 (284)
T ss_pred             ------CCHHHHHhhCCEEEEeCCCcCc--cCHHHc----CCCCEEEEec
Confidence                  2456678999999999999998  454444    4457999974

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=95.50  E-value=0.042  Score=52.01  Aligned_cols=33  Identities=27%  Similarity=0.436  Sum_probs=29.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~   36 (480)
                      .+|+|||+|.+|..+|..|++.  |. +++++|.|.
T Consensus        29 ~~V~ViG~GglGs~ia~~La~~--Gvg~i~lvD~D~   62 (212)
T PRK08644         29 AKVGIAGAGGLGSNIAVALARS--GVGNLKLVDFDV   62 (212)
T ss_pred             CCEEEECcCHHHHHHHHHHHHc--CCCeEEEEeCCE
Confidence            4799999999999999999998  65 599999884

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.49  E-value=0.11  Score=51.52  Aligned_cols=129  Identities=16%  Similarity=0.084  Sum_probs=77.0

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCC-----CCCCCc
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMS-----PPASKQ  399 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  399 (480)
                      ++|+|+|...          ....++..|..+|.+|.+||+.....+.........+  +.-.+.....     .....+
T Consensus         4 ~kIaViGaG~----------mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   71 (287)
T PRK08293          4 KNVTVAGAGV----------LGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLA--DRYVRDLEATKEAPAEAALNR   71 (287)
T ss_pred             cEEEEECCCH----------HHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHH--HHHHHcCCCChhhhHHHHHcC
Confidence            5899999865          8889999999999999999986543211110000000  0000000000     011246


Q ss_pred             eeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhc---CcEEEEe
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREI---GFIVYSI  465 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~---g~~y~~i  465 (480)
                      ++..++.+++++++|.|+.++.-+ +++.--++++....++..+|.+..+.+....+.+.   .-++.|+
T Consensus        72 i~~~~d~~~a~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~~~~~~~~~~~~~r~vg~  141 (287)
T PRK08293         72 ITLTTDLAEAVKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLLPSQFAEATGRPEKFLAL  141 (287)
T ss_pred             eEEeCCHHHHhcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCCHHHHHhhcCCcccEEEE
Confidence            777889999999999999998754 23433345666666666566677777766554432   2345554

>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional

Probab=95.48  E-value=0.024  Score=57.60  Aligned_cols=41  Identities=24%  Similarity=0.379  Sum_probs=34.3

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAW   42 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l   42 (480)
                      ||||.|.|+ |++|..++..|.+. .|++|+++|++.+....+
T Consensus         1 m~~ilVtGatGfiGs~l~~~L~~~-~~~~V~~~~r~~~~~~~~   42 (347)
T PRK11908          1 MKKVLILGVNGFIGHHLSKRILET-TDWEVYGMDMQTDRLGDL   42 (347)
T ss_pred             CcEEEEECCCcHHHHHHHHHHHhC-CCCeEEEEeCcHHHHHHh
Confidence            789999996 99999999999874 169999999987655444

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=95.47  E-value=0.11  Score=47.27  Aligned_cols=82  Identities=15%  Similarity=0.127  Sum_probs=60.8

Q ss_pred             HhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCC
Q 011654          317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPA  396 (480)
Q Consensus       317 ~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (480)
                      .+..++++++|+|+|.+-         .-...+++.|.++|++|.+.+...                             
T Consensus        37 ~~~~~l~gk~vlViG~G~---------~~G~~~a~~L~~~g~~V~v~~r~~-----------------------------   78 (168)
T cd01080          37 RYGIDLAGKKVVVVGRSN---------IVGKPLAALLLNRNATVTVCHSKT-----------------------------   78 (168)
T ss_pred             HcCCCCCCCEEEEECCcH---------HHHHHHHHHHhhCCCEEEEEECCc-----------------------------
Confidence            344578999999999743         236779999999999998877532                             


Q ss_pred             CCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC
Q 011654          397 SKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI  449 (480)
Q Consensus       397 ~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~  449 (480)
                             +++.+.+++||+||.+|.-+++  ++.+.+    ++..+|||.-.-
T Consensus        79 -------~~l~~~l~~aDiVIsat~~~~i--i~~~~~----~~~~viIDla~p  118 (168)
T cd01080          79 -------KNLKEHTKQADIVIVAVGKPGL--VKGDMV----KPGAVVIDVGIN  118 (168)
T ss_pred             -------hhHHHHHhhCCEEEEcCCCCce--ecHHHc----cCCeEEEEccCC
Confidence                   2346678999999999998874  555544    445699998543

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=95.46  E-value=0.026  Score=44.37  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=30.4

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      ||.|||.|++|.-+|..|++.  |.+|+++++++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~--g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAEL--GKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHT--TSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHh--CcEEEEEeccch
Confidence            689999999999999999998  999999998654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.45  E-value=0.12  Score=51.15  Aligned_cols=78  Identities=18%  Similarity=0.209  Sum_probs=60.8

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+-++++++|.|+|=|-         .-..+|+..|.++|+.|++.+-..                              
T Consensus       154 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~aTVt~chs~T------------------------------  194 (294)
T PRK14187        154 ITRNLSGSDAVVIGRSN---------IVGKPMACLLLGENCTVTTVHSAT------------------------------  194 (294)
T ss_pred             hCCCCCCCEEEEECCCc---------cchHHHHHHHhhCCCEEEEeCCCC------------------------------
Confidence            34468999999999643         467889999999999999876532                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEc
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDG  446 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~  446 (480)
                            .++.+.+++||+||.++..+.|  ++.+++.    +.++|||.
T Consensus       195 ------~~l~~~~~~ADIvVsAvGkp~~--i~~~~ik----~gaiVIDV  231 (294)
T PRK14187        195 ------RDLADYCSKADILVAAVGIPNF--VKYSWIK----KGAIVIDV  231 (294)
T ss_pred             ------CCHHHHHhhCCEEEEccCCcCc--cCHHHcC----CCCEEEEe
Confidence                  2456678999999999999998  5555553    45699997

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=95.44  E-value=0.058  Score=53.71  Aligned_cols=57  Identities=18%  Similarity=0.179  Sum_probs=39.8

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .||+|+| .||.|.-+...|+.+ |..++..+.-+..           +                 . ..+.++.++++|
T Consensus         2 ~~v~IvGasGy~G~el~rlL~~H-P~~el~~l~s~~~-----------~-----------------~-~~~~~~~~~~~D   51 (310)
T TIGR01851         2 PKVFIDGEAGTTGLQIRERLSGR-DDIELLSIAPDRR-----------K-----------------D-AAERAKLLNAAD   51 (310)
T ss_pred             CeEEEECCCChhHHHHHHHHhCC-CCeEEEEEecccc-----------c-----------------C-cCCHhHhhcCCC
Confidence            4899999 599999999999987 6666665542211           0                 0 013344457899


Q ss_pred             EEEEeccC
Q 011654           81 IVFVSVNT   88 (480)
Q Consensus        81 vVii~Vpt   88 (480)
                      ++|+|+|.
T Consensus        52 ~vFlalp~   59 (310)
T TIGR01851        52 VAILCLPD   59 (310)
T ss_pred             EEEECCCH
Confidence            99999874

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.44  E-value=0.19  Score=52.98  Aligned_cols=114  Identities=18%  Similarity=0.183  Sum_probs=67.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH--HHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cC-HHHHhc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR--IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TD-IEKHVA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d-~~~a~~   77 (480)
                      ++|.|+|.|..|.+.|..|++.  |++|+++|.++..  .+.+.+-                 ..++++. .. ......
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~--g~~v~~~d~~~~~~~~~~l~~~-----------------~~gi~~~~g~~~~~~~~   66 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKN--GAEVAAYDAELKPERVAQIGKM-----------------FDGLVFYTGRLKDALDN   66 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCCCchhHHHHhhc-----------------cCCcEEEeCCCCHHHHh
Confidence            5899999999999999999988  9999999976532  2222210                 0022221 11 222246


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHH----------HHHhhCC--CCCEEEEecCCccchHHH-HHHHHHhc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------MIANVSN--SNKIVVEKSTVPVKTAEA-IEKILTHN  144 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l~--~~~iVi~~STv~~gt~~~-l~~~l~~~  144 (480)
                      ++|+||.+..-|.+        .|   .++.+.+          -+...++  +..+|.+..|..-.||.. +..+|+..
T Consensus        67 ~~d~vv~spgi~~~--------~p---~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~  135 (445)
T PRK04308         67 GFDILALSPGISER--------QP---DIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIKC  135 (445)
T ss_pred             CCCEEEECCCCCCC--------CH---HHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHHc
Confidence            89999988554422        22   2333321          1123332  246777777776666655 66777765


Q ss_pred             C
Q 011654          145 S  145 (480)
Q Consensus       145 ~  145 (480)
                      +
T Consensus       136 g  136 (445)
T PRK04308        136 G  136 (445)
T ss_pred             C
Confidence            3

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.42  E-value=0.12  Score=52.14  Aligned_cols=41  Identities=20%  Similarity=0.178  Sum_probs=32.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      .+|+|+|+|-+|. ||..++++. |.+|+++|+++++.+..++
T Consensus       168 ~~V~I~G~GGlGh-~avQ~Aka~-ga~Via~~~~~~K~e~a~~  208 (339)
T COG1064         168 KWVAVVGAGGLGH-MAVQYAKAM-GAEVIAITRSEEKLELAKK  208 (339)
T ss_pred             CEEEEECCcHHHH-HHHHHHHHc-CCeEEEEeCChHHHHHHHH
Confidence            3799999997777 455666532 8999999999999987765

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=95.41  E-value=0.029  Score=51.11  Aligned_cols=68  Identities=24%  Similarity=0.544  Sum_probs=45.0

Q ss_pred             cEEEEEcCChhHHHHHH-HHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654            2 VKICCIGAGYVGGPTMA-VIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~-~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--   77 (480)
                      .++.+||+|.+|.+++. .+.++. |++++ ++|++++.+-.-..+ .++++  +               ++++.-++  
T Consensus        85 tnviiVG~GnlG~All~Y~f~~~~-~~~iv~~FDv~~~~VG~~~~~-v~V~~--~---------------d~le~~v~~~  145 (211)
T COG2344          85 TNVIIVGVGNLGRALLNYNFSKKN-GMKIVAAFDVDPDKVGTKIGD-VPVYD--L---------------DDLEKFVKKN  145 (211)
T ss_pred             eeEEEEccChHHHHHhcCcchhhc-CceEEEEecCCHHHhCcccCC-eeeec--h---------------HHHHHHHHhc
Confidence            58999999999999986 345332 67654 699999976433322 33321  2               23333333  


Q ss_pred             cCcEEEEeccC
Q 011654           78 EADIVFVSVNT   88 (480)
Q Consensus        78 ~aDvVii~Vpt   88 (480)
                      +.|+.++|||.
T Consensus       146 dv~iaiLtVPa  156 (211)
T COG2344         146 DVEIAILTVPA  156 (211)
T ss_pred             CccEEEEEccH
Confidence            78899999984

>PRK01581 speE spermidine synthase; Validated

Probab=95.40  E-value=0.88  Score=46.42  Aligned_cols=142  Identities=16%  Similarity=0.171  Sum_probs=77.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEE-ecCHHHHh---
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFF-STDIEKHV---   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~-t~d~~~a~---   76 (480)
                      .+|.|||+|. |..+. .+.+..+.-+|+++|+|++.++..++- ..     +.++... ....++++ ..|..+-+   
T Consensus       152 krVLIIGgGd-G~tlr-elLk~~~v~~It~VEIDpeVIelAr~~-~~-----L~~~~~~~~~DpRV~vvi~Da~~fL~~~  223 (374)
T PRK01581        152 KRVLILGGGD-GLALR-EVLKYETVLHVDLVDLDGSMINMARNV-PE-----LVSLNKSAFFDNRVNVHVCDAKEFLSSP  223 (374)
T ss_pred             CEEEEECCCH-HHHHH-HHHhcCCCCeEEEEeCCHHHHHHHHhc-cc-----cchhccccCCCCceEEEECcHHHHHHhc
Confidence            4799999984 44444 444442236899999999998877741 00     0000000 01234433 34444322   


Q ss_pred             -ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH---HHHHHHHhcCCCCceeE
Q 011654           77 -AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE---AIEKILTHNSREIKYQI  152 (480)
Q Consensus        77 -~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~---~l~~~l~~~~~g~~~~v  152 (480)
                       ...|+||+-+|.|...       ...--+-.+.++.+.+.|+++-+++..++.+.....   .+...+++.+.....+.
T Consensus       224 ~~~YDVIIvDl~DP~~~-------~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~af~~v~~y~  296 (374)
T PRK01581        224 SSLYDVIIIDFPDPATE-------LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHAGLTVKSYH  296 (374)
T ss_pred             CCCccEEEEcCCCcccc-------chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHhCCceEEEE
Confidence             2469999998766431       111122256778888999999988776654432222   23445555432222334


Q ss_pred             eeCCcc
Q 011654          153 LSNPEF  158 (480)
Q Consensus       153 ~~~Pe~  158 (480)
                      .+-|.+
T Consensus       297 t~vPsy  302 (374)
T PRK01581        297 TIVPSF  302 (374)
T ss_pred             EecCCC
Confidence            456665

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=95.39  E-value=0.02  Score=59.56  Aligned_cols=34  Identities=24%  Similarity=0.404  Sum_probs=31.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      |+|+|||.|.+|+++|..|+++  |++|+++|+++.
T Consensus         1 ~~v~IVG~Gi~Gls~A~~l~~~--g~~V~vle~~~~   34 (416)
T PRK00711          1 MRVVVLGSGVIGVTSAWYLAQA--GHEVTVIDRQPG   34 (416)
T ss_pred             CEEEEECCcHHHHHHHHHHHHC--CCEEEEEeCCCc
Confidence            7999999999999999999998  999999999753

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.37  E-value=0.26  Score=51.81  Aligned_cols=32  Identities=22%  Similarity=0.407  Sum_probs=29.1

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      +|.|||+|..|.+.+..|++.  |++|+++|.++
T Consensus         8 ~i~v~G~G~sG~s~~~~l~~~--G~~v~~~D~~~   39 (438)
T PRK03806          8 KVVIIGLGLTGLSCVDFFLAR--GVTPRVIDTRI   39 (438)
T ss_pred             EEEEEeeCHHHHHHHHHHHHC--CCeEEEEcCCC
Confidence            699999999999999988887  99999999754

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=95.36  E-value=0.18  Score=52.96  Aligned_cols=110  Identities=19%  Similarity=0.220  Sum_probs=65.8

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HH----HHHCCCCCCCCCChHHHHHhhcCCCEEEe--cCHHHH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR-IA----AWNGDQLPIYEPGLEDVVTQCRGRNLFFS--TDIEKH   75 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~----~l~~~~~~~~e~~l~~l~~~~~~~~l~~t--~d~~~a   75 (480)
                      ||.|||+|..|.++|..|.++  |++|++.|..+.. ..    .+..                  ..++++.  .+ .+.
T Consensus         1 ~~~~iG~G~~G~a~a~~l~~~--G~~V~~sD~~~~~~~~~~~~~~~~------------------~~gi~~~~g~~-~~~   59 (433)
T TIGR01087         1 KILILGLGKTGRAVARFLHKK--GAEVTVTDLKPNEELEPSMGQLRL------------------NEGSVLHTGLH-LED   59 (433)
T ss_pred             CEEEEEeCHhHHHHHHHHHHC--CCEEEEEeCCCCccchhHHHHHhh------------------ccCcEEEecCc-hHH
Confidence            589999999999999999998  9999999976431 11    1110                  0112221  23 234


Q ss_pred             hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHH---------H-HHhhCCCCCEEEEecCCccchHHH-HHHHHHhc
Q 011654           76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------M-IANVSNSNKIVVEKSTVPVKTAEA-IEKILTHN  144 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~-i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~  144 (480)
                      +.++|+||.+-.-|.+        .|.   +..+-+         + +...+ +..+|.+..|..-.||.. +..+|+..
T Consensus        60 ~~~~d~vv~sp~i~~~--------~p~---~~~a~~~~i~i~~~~e~~~~~~-~~~~I~VTGT~GKTTTt~li~~iL~~~  127 (433)
T TIGR01087        60 LNNADLVVKSPGIPPD--------HPL---VQAAAKRGIPVVGDIELFLRLV-PLPVVAITGTNGKTTTTSLLYHLLKAA  127 (433)
T ss_pred             hccCCEEEECCCCCCC--------CHH---HHHHHHCCCcEEEHHHHHHhhc-CCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            6789988777443321        222   222221         1 22333 456777777776666655 67788765


Q ss_pred             C
Q 011654          145 S  145 (480)
Q Consensus       145 ~  145 (480)
                      +
T Consensus       128 g  128 (433)
T TIGR01087       128 G  128 (433)
T ss_pred             C
Confidence            3

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.35  E-value=0.14  Score=50.47  Aligned_cols=79  Identities=11%  Similarity=0.129  Sum_probs=60.8

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHh--CCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLG--DKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPP  395 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~--~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (480)
                      .+-++++++|.|+|=|-         .-..+|+..|.+  +++.|++..-..                            
T Consensus       152 ~~i~l~Gk~vvViGrS~---------~VGkPla~lL~~~~~~atVtvchs~T----------------------------  194 (284)
T PRK14193        152 YDVELAGAHVVVIGRGV---------TVGRPIGLLLTRRSENATVTLCHTGT----------------------------  194 (284)
T ss_pred             hCCCCCCCEEEEECCCC---------cchHHHHHHHhhccCCCEEEEeCCCC----------------------------
Confidence            34467899999999654         567889999988  799998865421                            


Q ss_pred             CCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          396 ASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       396 ~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                              .++.+.++.||+||.++.++.|  +..+.+    ++.++|||.-
T Consensus       195 --------~~l~~~~k~ADIvV~AvGkp~~--i~~~~i----k~GavVIDvG  232 (284)
T PRK14193        195 --------RDLAAHTRRADIIVAAAGVAHL--VTADMV----KPGAAVLDVG  232 (284)
T ss_pred             --------CCHHHHHHhCCEEEEecCCcCc--cCHHHc----CCCCEEEEcc
Confidence                    2467778999999999999998  455455    4457999975

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=95.34  E-value=0.059  Score=50.54  Aligned_cols=33  Identities=27%  Similarity=0.416  Sum_probs=29.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~   36 (480)
                      .||.|||+|.+|..+|..|+..  |. +++++|.+.
T Consensus        22 ~~VlviG~GglGs~ia~~La~~--Gv~~i~lvD~d~   55 (202)
T TIGR02356        22 SHVLIIGAGGLGSPAALYLAGA--GVGTIVIVDDDH   55 (202)
T ss_pred             CCEEEECCCHHHHHHHHHHHHc--CCCeEEEecCCE
Confidence            3799999999999999999998  75 899999874

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=95.34  E-value=0.058  Score=43.73  Aligned_cols=88  Identities=17%  Similarity=0.174  Sum_probs=59.3

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCC---CEEE-EECCCCChHHHH-HhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDK---AKLS-IYDPQVTEDQIQ-RDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g---~~V~-~~DP~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      ||+|+|..          ..+..|++.|.+.|   .+|. ++++.-...... .++                      ..
T Consensus         1 kI~iIG~G----------~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~----------------------~~   48 (96)
T PF03807_consen    1 KIGIIGAG----------NMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEY----------------------GV   48 (96)
T ss_dssp             EEEEESTS----------HHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHC----------------------TT
T ss_pred             CEEEECCC----------HHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhh----------------------cc
Confidence            68888864          48899999999999   9999 558865433222 221                      12


Q ss_pred             eeec-CHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          401 NVVW-DAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       401 ~~~~-~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                      .... +..++++.+|+|++.++...+.++-. .+... .+.++|||.-
T Consensus        49 ~~~~~~~~~~~~~advvilav~p~~~~~v~~-~i~~~-~~~~~vis~~   94 (96)
T PF03807_consen   49 QATADDNEEAAQEADVVILAVKPQQLPEVLS-EIPHL-LKGKLVISIA   94 (96)
T ss_dssp             EEESEEHHHHHHHTSEEEE-S-GGGHHHHHH-HHHHH-HTTSEEEEES
T ss_pred             ccccCChHHhhccCCEEEEEECHHHHHHHHH-HHhhc-cCCCEEEEeC
Confidence            3334 78999999999999999998877443 33223 2345898864

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms)

Probab=95.31  E-value=0.068  Score=54.41  Aligned_cols=34  Identities=29%  Similarity=0.506  Sum_probs=27.4

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEE-eCCH
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVV-DISV   36 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~-D~~~   36 (480)
                      |||+|+|+ |+||..++..|..+ +.+++..+ +.++
T Consensus         1 ~kVaIvGatG~~G~~L~~~l~~~-~~~~l~~v~~~~~   36 (341)
T TIGR00978         1 MRVAVLGATGLVGQKFVKLLAKH-PYFELAKVVASPR   36 (341)
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCceEEEEEEChh
Confidence            69999995 99999999988876 35788776 6543

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=95.28  E-value=0.68  Score=41.67  Aligned_cols=121  Identities=17%  Similarity=0.250  Sum_probs=69.8

Q ss_pred             HHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCC
Q 011654          311 VNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQ  390 (480)
Q Consensus       311 ~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~  390 (480)
                      ++-+++..+-.+.++++.|+|...          -...+++.|+..|+.|.++|--. -..++.-               
T Consensus        10 ~d~i~r~t~~~l~Gk~vvV~GYG~----------vG~g~A~~lr~~Ga~V~V~e~DP-i~alqA~---------------   63 (162)
T PF00670_consen   10 VDGIMRATNLMLAGKRVVVIGYGK----------VGKGIARALRGLGARVTVTEIDP-IRALQAA---------------   63 (162)
T ss_dssp             HHHHHHHH-S--TTSEEEEE--SH----------HHHHHHHHHHHTT-EEEEE-SSH-HHHHHHH---------------
T ss_pred             HHHHHhcCceeeCCCEEEEeCCCc----------ccHHHHHHHhhCCCEEEEEECCh-HHHHHhh---------------
Confidence            344444444467899999999866          67899999999999999987632 1112211               


Q ss_pred             CCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC---CChHHHhhcCcEEEEecC
Q 011654          391 PMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI---LDVEKLREIGFIVYSIGK  467 (480)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~~iG~  467 (480)
                            ..+++. .+.+++++.+|.+|-.|..+..  ++.+. .+.|+..+++.+.-..   +|-+.+++.+..-..+..
T Consensus        64 ------~dGf~v-~~~~~a~~~adi~vtaTG~~~v--i~~e~-~~~mkdgail~n~Gh~d~Eid~~~L~~~~~~~~~v~~  133 (162)
T PF00670_consen   64 ------MDGFEV-MTLEEALRDADIFVTATGNKDV--ITGEH-FRQMKDGAILANAGHFDVEIDVDALEANAVEREEVRP  133 (162)
T ss_dssp             ------HTT-EE-E-HHHHTTT-SEEEE-SSSSSS--B-HHH-HHHS-TTEEEEESSSSTTSBTHHHHHTCTSEEEEEET
T ss_pred             ------hcCcEe-cCHHHHHhhCCEEEECCCCccc--cCHHH-HHHhcCCeEEeccCcCceeEeeccccccCcEEEEcCC
Confidence                  133444 3689999999999999999764  33334 4567888677665433   233345555555555543

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=95.27  E-value=0.067  Score=53.55  Aligned_cols=31  Identities=26%  Similarity=0.254  Sum_probs=24.5

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEE
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVV   32 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~   32 (480)
                      ++||+||| .||+|.-+...|..+ |..++...
T Consensus         2 ~~~VaIvGAtGy~G~eLlrlL~~h-p~~~l~~~   33 (313)
T PRK11863          2 KPKVFIDGEAGTTGLQIRERLAGR-SDIELLSI   33 (313)
T ss_pred             CcEEEEECCCCHHHHHHHHHHhcC-CCeEEEEE
Confidence            46999999 699999999999887 44455444

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.25  E-value=0.15  Score=50.30  Aligned_cols=78  Identities=13%  Similarity=0.092  Sum_probs=59.4

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +-++.+++|.|+|=|-         .-..+|+..|.++|+.|.+..-..                               
T Consensus       154 ~i~l~GK~vvViGrS~---------iVGkPla~lL~~~~ATVtichs~T-------------------------------  193 (288)
T PRK14171        154 EPNLTGKNVVIIGRSN---------IVGKPLSALLLKENCSVTICHSKT-------------------------------  193 (288)
T ss_pred             CCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC-------------------------------
Confidence            4468999999999643         456789999999999999765322                               


Q ss_pred             ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                           .++.+.++.||+||.++.++.|-  +...+    ++.++|||.-
T Consensus       194 -----~~L~~~~~~ADIvV~AvGkp~~i--~~~~v----k~GavVIDvG  231 (288)
T PRK14171        194 -----HNLSSITSKADIVVAAIGSPLKL--TAEYF----NPESIVIDVG  231 (288)
T ss_pred             -----CCHHHHHhhCCEEEEccCCCCcc--CHHHc----CCCCEEEEee
Confidence                 24566789999999999999874  44444    4457999975

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.24  E-value=0.13  Score=50.83  Aligned_cols=82  Identities=21%  Similarity=0.173  Sum_probs=61.9

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      ++-++++++|+|+|-+.         .-..+++..|..+|+.|.+.+-..                              
T Consensus       152 ~~i~l~Gk~vvVIGrs~---------~VG~pla~lL~~~gatVtv~~s~t------------------------------  192 (286)
T PRK14175        152 ADIDLEGKNAVVIGRSH---------IVGQPVSKLLLQKNASVTILHSRS------------------------------  192 (286)
T ss_pred             cCCCCCCCEEEEECCCc---------hhHHHHHHHHHHCCCeEEEEeCCc------------------------------
Confidence            34468999999999532         467889999999999999876421                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNIL  450 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~  450 (480)
                            .++.+.+++||+||.++..+.|  +..+.+    ++..+|||.-.-.
T Consensus       193 ------~~l~~~~~~ADIVIsAvg~p~~--i~~~~v----k~gavVIDvGi~~  233 (286)
T PRK14175        193 ------KDMASYLKDADVIVSAVGKPGL--VTKDVV----KEGAVIIDVGNTP  233 (286)
T ss_pred             ------hhHHHHHhhCCEEEECCCCCcc--cCHHHc----CCCcEEEEcCCCc
Confidence                  2456778999999999999987  444433    4557999986543

>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase

Probab=95.22  E-value=0.19  Score=53.17  Aligned_cols=110  Identities=21%  Similarity=0.221  Sum_probs=66.5

Q ss_pred             EEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHHH-HHHHHCCCCCCCCCChHHHHHhhcCCCEEEe--cCHHHHhcc
Q 011654            3 KICCIGAGYVGGP-TMAVIALKCPKIEVAVVDISVSR-IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS--TDIEKHVAE   78 (480)
Q Consensus         3 kI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t--~d~~~a~~~   78 (480)
                      +|-|||+|-.|.+ +|..|++.  |++|+++|.+... .+.+.+.                   ++++.  .+. +.+.+
T Consensus         1 ~~~~iGiggsGm~~la~~L~~~--G~~v~~~D~~~~~~~~~l~~~-------------------gi~~~~g~~~-~~~~~   58 (448)
T TIGR01082         1 KIHFVGIGGIGMSGIAEILLNR--GYQVSGSDIAENATTKRLEAL-------------------GIPIYIGHSA-ENLDD   58 (448)
T ss_pred             CEEEEEECHHHHHHHHHHHHHC--CCeEEEECCCcchHHHHHHHC-------------------cCEEeCCCCH-HHCCC
Confidence            4789999999998 99999988  9999999976532 2223221                   12222  122 33667


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHH----------HHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------MIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS  145 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~  145 (480)
                      +|+||++-.-|.           +...++.+.+          -+...+++..+|.+..|..-.||.. +..+|+..+
T Consensus        59 ~d~vV~spgi~~-----------~~p~~~~a~~~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~~g  125 (448)
T TIGR01082        59 ADVVVVSAAIKD-----------DNPEIVEAKERGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKEAG  125 (448)
T ss_pred             CCEEEECCCCCC-----------CCHHHHHHHHcCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHHcC
Confidence            998887743332           2122333321          1223333446777777876666655 677887654

UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.

>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=95.21  E-value=0.067  Score=54.23  Aligned_cols=70  Identities=19%  Similarity=0.327  Sum_probs=41.5

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec-CHHHHhc
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALK-CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST-DIEKHVA   77 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~-d~~~a~~   77 (480)
                      |+||+|+|+ |++|.-+...|.++ .|..++..+... +..     |+ ++...+          ..+.+.. +..+ ++
T Consensus         4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~~l~~v~s~-~~a-----G~-~l~~~~----------~~l~~~~~~~~~-~~   65 (336)
T PRK05671          4 PLDIAVVGATGTVGEALVQILEERDFPVGTLHLLASS-ESA-----GH-SVPFAG----------KNLRVREVDSFD-FS   65 (336)
T ss_pred             CCEEEEEccCCHHHHHHHHHHhhCCCCceEEEEEECc-ccC-----CC-eeccCC----------cceEEeeCChHH-hc
Confidence            468999996 99999999999965 233455555332 211     21 111111          1133322 2223 68


Q ss_pred             cCcEEEEeccC
Q 011654           78 EADIVFVSVNT   88 (480)
Q Consensus        78 ~aDvVii~Vpt   88 (480)
                      ++|++|+|+|.
T Consensus        66 ~vD~vFla~p~   76 (336)
T PRK05671         66 QVQLAFFAAGA   76 (336)
T ss_pred             CCCEEEEcCCH
Confidence            89999999873

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=95.19  E-value=0.18  Score=49.69  Aligned_cols=102  Identities=13%  Similarity=0.155  Sum_probs=72.0

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC----CEEEEECCCCCh--HHHHHhhhccccCCCCCCCCCCCCCCC
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDK----AKLSIYDPQVTE--DQIQRDLSMKKFDWDHPIHLQPMSPPA  396 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g----~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (480)
                      +..+|+|+|+.          ..+..+++.|.+.|    .+|.++|+....  +.+...                     
T Consensus         2 ~~mkI~~IG~G----------~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~---------------------   50 (279)
T PRK07679          2 SIQNISFLGAG----------SIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQK---------------------   50 (279)
T ss_pred             CCCEEEEECcc----------HHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHh---------------------
Confidence            34589999974          58899999999988    789999975321  111111                     


Q ss_pred             CCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhh
Q 011654          397 SKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLRE  457 (480)
Q Consensus       397 ~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~  457 (480)
                       .++...++..++++++|+||+++.-+.+.+. .+.+....++..+|||.-+-+..+.+++
T Consensus        51 -~g~~~~~~~~e~~~~aDvVilav~p~~~~~v-l~~l~~~~~~~~liIs~~aGi~~~~l~~  109 (279)
T PRK07679         51 -YGVKGTHNKKELLTDANILFLAMKPKDVAEA-LIPFKEYIHNNQLIISLLAGVSTHSIRN  109 (279)
T ss_pred             -cCceEeCCHHHHHhcCCEEEEEeCHHHHHHH-HHHHHhhcCCCCEEEEECCCCCHHHHHH
Confidence             1345567888888999999999998877653 3556555555569999855557776664

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.18  E-value=0.16  Score=49.85  Aligned_cols=78  Identities=18%  Similarity=0.136  Sum_probs=59.5

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +-++++++|.|+|=|-         .-..+++..|.++|+.|.+..-..                               
T Consensus       152 ~i~l~Gk~vvViGrS~---------~VG~Pla~lL~~~~AtVti~hs~T-------------------------------  191 (281)
T PRK14183        152 EIDVKGKDVCVVGASN---------IVGKPMAALLLNANATVDICHIFT-------------------------------  191 (281)
T ss_pred             CCCCCCCEEEEECCCC---------cchHHHHHHHHHCCCEEEEeCCCC-------------------------------
Confidence            3468999999999543         466889999999999998864321                               


Q ss_pred             ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                           .++.+.++.||+||.++++++|  +..+++    ++.++|||.-
T Consensus       192 -----~~l~~~~~~ADIvV~AvGkp~~--i~~~~v----k~gavvIDvG  229 (281)
T PRK14183        192 -----KDLKAHTKKADIVIVGVGKPNL--ITEDMV----KEGAIVIDIG  229 (281)
T ss_pred             -----cCHHHHHhhCCEEEEecCcccc--cCHHHc----CCCcEEEEee
Confidence                 2456678999999999999998  444444    3456999975

>PRK14982 acyl-ACP reductase; Provisional

Probab=95.18  E-value=0.11  Score=52.48  Aligned_cols=69  Identities=23%  Similarity=0.395  Sum_probs=51.2

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      ++|.|+|+ |.||..++..|+.+. | .+++++++++++.+.+.+..               ..+.+   .++++++.++
T Consensus       156 k~VLVtGAtG~IGs~lar~L~~~~-gv~~lilv~R~~~rl~~La~el---------------~~~~i---~~l~~~l~~a  216 (340)
T PRK14982        156 ATVAVVGATGDIGSAVCRWLDAKT-GVAELLLVARQQERLQELQAEL---------------GGGKI---LSLEEALPEA  216 (340)
T ss_pred             CEEEEEccChHHHHHHHHHHHhhC-CCCEEEEEcCCHHHHHHHHHHh---------------ccccH---HhHHHHHccC
Confidence            57999998 899999999998531 3 68999999988887766420               00111   2466778999


Q ss_pred             cEEEEeccCC
Q 011654           80 DIVFVSVNTP   89 (480)
Q Consensus        80 DvVii~Vptp   89 (480)
                      |+|+.+...+
T Consensus       217 DiVv~~ts~~  226 (340)
T PRK14982        217 DIVVWVASMP  226 (340)
T ss_pred             CEEEECCcCC
Confidence            9999997654

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=95.16  E-value=0.4  Score=44.86  Aligned_cols=108  Identities=19%  Similarity=0.166  Sum_probs=70.0

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHH-HhhhccccCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQ-RDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      +.++++++|+|.|+.-          -...+++.|.+.|++|.++|......... ..+                     
T Consensus        23 ~~~l~gk~v~I~G~G~----------vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~---------------------   71 (200)
T cd01075          23 TDSLEGKTVAVQGLGK----------VGYKLAEHLLEEGAKLIVADINEEAVARAAELF---------------------   71 (200)
T ss_pred             CCCCCCCEEEEECCCH----------HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHc---------------------
Confidence            4578899999999852          77889999999999999999864321111 111                     


Q ss_pred             CceeeecCHHHhc-ccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC-CC----hHHHhhcCcEEEE
Q 011654          398 KQVNVVWDAYQAA-KDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI-LD----VEKLREIGFIVYS  464 (480)
Q Consensus       398 ~~~~~~~~~~~a~-~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~-~~----~~~~~~~g~~y~~  464 (480)
                       +....++ ++.+ .++|+++-+.-...   ++-+.+ +.++.+ +|+++-|- +.    .+.+++.|+.|.-
T Consensus        72 -g~~~v~~-~~l~~~~~Dv~vp~A~~~~---I~~~~~-~~l~~~-~v~~~AN~~~~~~~~~~~L~~~Gi~~~P  137 (200)
T cd01075          72 -GATVVAP-EEIYSVDADVFAPCALGGV---INDDTI-PQLKAK-AIAGAANNQLADPRHGQMLHERGILYAP  137 (200)
T ss_pred             -CCEEEcc-hhhccccCCEEEecccccc---cCHHHH-HHcCCC-EEEECCcCccCCHhHHHHHHHCCCEEeC
Confidence             1122222 3333 37999986655443   454555 455655 89999986 22    2345678988843

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.12  E-value=0.094  Score=51.65  Aligned_cols=71  Identities=18%  Similarity=0.376  Sum_probs=53.5

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+||| ...+|.|+|..|.++  +..|++++..                                 |.++.+.+++||
T Consensus       159 k~vvViGrS~iVG~Pla~lL~~~--~atVt~chs~---------------------------------t~~l~~~~~~AD  203 (284)
T PRK14190        159 KHVVVVGRSNIVGKPVGQLLLNE--NATVTYCHSK---------------------------------TKNLAELTKQAD  203 (284)
T ss_pred             CEEEEECCCCccHHHHHHHHHHC--CCEEEEEeCC---------------------------------chhHHHHHHhCC
Confidence            4799999 578899999999988  8899988631                                 235566689999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +||.+++.|.-         .+           ..++++|.+||+.+
T Consensus       204 IvI~AvG~p~~---------i~-----------~~~ik~gavVIDvG  230 (284)
T PRK14190        204 ILIVAVGKPKL---------IT-----------ADMVKEGAVVIDVG  230 (284)
T ss_pred             EEEEecCCCCc---------CC-----------HHHcCCCCEEEEee
Confidence            99999986531         11           23457899998643

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=95.11  E-value=0.16  Score=44.93  Aligned_cols=112  Identities=17%  Similarity=0.150  Sum_probs=69.2

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEECCCCChHHH-HHhhhccccCCCCCCCCCCCCCCCC
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDK-AKLSIYDPQVTEDQI-QRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      ...++++|+|+|..          ..+..+++.|.+.| .+|.++|+.....+. ...++.                 ..
T Consensus        15 ~~~~~~~i~iiG~G----------~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~-----------------~~   67 (155)
T cd01065          15 IELKGKKVLILGAG----------GAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGE-----------------LG   67 (155)
T ss_pred             CCCCCCEEEEECCc----------HHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhh-----------------cc
Confidence            34678899999964          36788999999885 889999986543221 222210                 00


Q ss_pred             CceeeecCHHHhcccccEEEEEeccccc--ccccHHHHHHhcCCCCEEEEcCCCCCh-----HHHhhcCcEE
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEF--KTLDYQKIFDNMRKPAYIFDGRNILDV-----EKLREIGFIV  462 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~--~~~~~~~~~~~~~~~~~i~D~~~~~~~-----~~~~~~g~~y  462 (480)
                      -.. ...+..++++++|+||.+|.-+..  .+.....  ..+++..+|+|.... +.     +.+++.|..+
T Consensus        68 ~~~-~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~~--~~~~~~~~v~D~~~~-~~~~~l~~~~~~~g~~~  135 (155)
T cd01065          68 IAI-AYLDLEELLAEADLIINTTPVGMKPGDELPLPP--SLLKPGGVVYDVVYN-PLETPLLKEARALGAKT  135 (155)
T ss_pred             cce-eecchhhccccCCEEEeCcCCCCCCCCCCCCCH--HHcCCCCEEEEcCcC-CCCCHHHHHHHHCCCce
Confidence            001 224566778999999999988764  1221111  223555699999655 33     3455666654

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=95.09  E-value=0.068  Score=52.89  Aligned_cols=72  Identities=11%  Similarity=0.088  Sum_probs=51.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe---cCHHHHhc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS---TDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t---~d~~~a~~   77 (480)
                      .++.|||+|-+|.+++..|+..  |. +|++++|++++.+.+.+....              ...+...   .+..+.+.
T Consensus       126 k~vlvlGaGGaarai~~aL~~~--G~~~i~I~nRt~~ka~~La~~~~~--------------~~~~~~~~~~~~~~~~~~  189 (282)
T TIGR01809       126 FRGLVIGAGGTSRAAVYALASL--GVTDITVINRNPDKLSRLVDLGVQ--------------VGVITRLEGDSGGLAIEK  189 (282)
T ss_pred             ceEEEEcCcHHHHHHHHHHHHc--CCCeEEEEeCCHHHHHHHHHHhhh--------------cCcceeccchhhhhhccc
Confidence            3689999999999999999987  65 799999999998887642100              0011111   12234457


Q ss_pred             cCcEEEEeccCC
Q 011654           78 EADIVFVSVNTP   89 (480)
Q Consensus        78 ~aDvVii~Vptp   89 (480)
                      ++|+||-|+|..
T Consensus       190 ~~DiVInaTp~g  201 (282)
T TIGR01809       190 AAEVLVSTVPAD  201 (282)
T ss_pred             CCCEEEECCCCC
Confidence            899999997753

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=95.07  E-value=0.21  Score=56.90  Aligned_cols=110  Identities=19%  Similarity=0.209  Sum_probs=65.8

Q ss_pred             EEEEEcCChhHHHH-HHHHHHcCCCCeEEEEeCCHH-HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHHhccC
Q 011654            3 KICCIGAGYVGGPT-MAVIALKCPKIEVAVVDISVS-RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKHVAEA   79 (480)
Q Consensus         3 kI~VIGlG~~G~~l-A~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a~~~a   79 (480)
                      +|.|||+|..|.+. |..|.++  |++|+++|.++. ..+.+.+.                   ++.+. ....+.+.++
T Consensus         6 ~i~viG~G~sG~salA~~L~~~--G~~V~~sD~~~~~~~~~L~~~-------------------gi~~~~g~~~~~~~~~   64 (809)
T PRK14573          6 FYHFIGIGGIGMSALAHILLDR--GYSVSGSDLSEGKTVEKLKAK-------------------GARFFLGHQEEHVPED   64 (809)
T ss_pred             eEEEEEecHHhHHHHHHHHHHC--CCeEEEECCCCChHHHHHHHC-------------------CCEEeCCCCHHHcCCC
Confidence            49999999999997 8888888  999999997642 22333321                   12211 1122336678


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHH---------HH-HhhCCCCCEEEEecCCccchHHH-HHHHHHhc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MI-ANVSNSNKIVVEKSTVPVKTAEA-IEKILTHN  144 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i-~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~  144 (480)
                      |+||++-.-|.           +...++.+.+         ++ ...++...+|.+..|..-.||.. +..+|+..
T Consensus        65 d~vV~SpgI~~-----------~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~  129 (809)
T PRK14573         65 AVVVYSSSISK-----------DNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEA  129 (809)
T ss_pred             CEEEECCCcCC-----------CCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhC
Confidence            99887743332           2222333321         12 22233336777777877666655 56778764

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=95.03  E-value=0.11  Score=44.26  Aligned_cols=97  Identities=13%  Similarity=0.126  Sum_probs=59.9

Q ss_pred             cEEEEEc----CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIG----AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIG----lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      ++|+|||    -+.+|.-+...|.++  |++|+.++.....+                        .+.....++++.-.
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l~~~--G~~v~~Vnp~~~~i------------------------~G~~~y~sl~e~p~   54 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNLKAA--GYEVYPVNPKGGEI------------------------LGIKCYPSLAEIPE   54 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHHHHT--T-EEEEESTTCSEE------------------------TTEE-BSSGGGCSS
T ss_pred             CEEEEEcccCCCCChHHHHHHHHHhC--CCEEEEECCCceEE------------------------CcEEeeccccCCCC
Confidence            4799999    799999999999997  99999987643211                        24667778877337


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      ..|++++++|.               ..+.++++++... ..+.+++..+    ...+++.+.+++.
T Consensus        55 ~iDlavv~~~~---------------~~~~~~v~~~~~~-g~~~v~~~~g----~~~~~~~~~a~~~  101 (116)
T PF13380_consen   55 PIDLAVVCVPP---------------DKVPEIVDEAAAL-GVKAVWLQPG----AESEELIEAAREA  101 (116)
T ss_dssp             T-SEEEE-S-H---------------HHHHHHHHHHHHH-T-SEEEE-TT----S--HHHHHHHHHT
T ss_pred             CCCEEEEEcCH---------------HHHHHHHHHHHHc-CCCEEEEEcc----hHHHHHHHHHHHc
Confidence            89999999873               2345666666554 3345555433    3345566666664

>PRK08040 putative semialdehyde dehydrogenase; Provisional

Probab=95.01  E-value=0.057  Score=54.65  Aligned_cols=90  Identities=21%  Similarity=0.317  Sum_probs=54.5

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH-Hhcc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALK-CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK-HVAE   78 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~-a~~~   78 (480)
                      +||+|||+ |++|.-+...|+.+ .|..++..+..+.+      .|+ ++...+          ..+.+. ++++ ...+
T Consensus         5 ~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s------aG~-~~~~~~----------~~~~v~-~~~~~~~~~   66 (336)
T PRK08040          5 WNIALLGATGAVGEALLELLAERQFPVGELYALASEES------AGE-TLRFGG----------KSVTVQ-DAAEFDWSQ   66 (336)
T ss_pred             CEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc------CCc-eEEECC----------cceEEE-eCchhhccC
Confidence            68999996 99999999999974 36677777754321      121 111111          124443 3333 2368


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhh-CCCCCEEEEecC
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV-SNSNKIVVEKST  128 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~ST  128 (480)
                      +|++|+|+|..                   +..++.+. ...|..||+.|.
T Consensus        67 ~Dvvf~a~p~~-------------------~s~~~~~~~~~~g~~VIDlS~   98 (336)
T PRK08040         67 AQLAFFVAGRE-------------------ASAAYAEEATNAGCLVIDSSG   98 (336)
T ss_pred             CCEEEECCCHH-------------------HHHHHHHHHHHCCCEEEECCh
Confidence            99999998742                   22333332 246888888663

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=95.00  E-value=0.1  Score=51.45  Aligned_cols=70  Identities=20%  Similarity=0.377  Sum_probs=53.1

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|||- ..+|.|+|..|.++  +..|+.+...                                 |.++++..++||
T Consensus       156 k~vvViGrS~iVGkPla~lL~~~--~aTVtichs~---------------------------------T~~l~~~~~~AD  200 (287)
T PRK14173        156 KEVVVVGRSNIVGKPLAALLLRE--DATVTLAHSK---------------------------------TQDLPAVTRRAD  200 (287)
T ss_pred             CEEEEECCCCccHHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence            47999995 77899999999987  7899977631                                 345666688999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK  126 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~  126 (480)
                      +||.+++.|--         .+           ..++++|++||+.
T Consensus       201 IvIsAvGkp~~---------i~-----------~~~vk~GavVIDV  226 (287)
T PRK14173        201 VLVVAVGRPHL---------IT-----------PEMVRPGAVVVDV  226 (287)
T ss_pred             EEEEecCCcCc---------cC-----------HHHcCCCCEEEEc
Confidence            99999986621         11           2456889999864

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=94.99  E-value=0.2  Score=49.64  Aligned_cols=79  Identities=18%  Similarity=0.108  Sum_probs=60.8

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+-++++++|.|+|=|.         .-..+|+..|.++|+.|++.+-..                              
T Consensus       161 ~~i~l~Gk~vvVIGRS~---------iVGkPla~lL~~~~ATVtvchs~T------------------------------  201 (299)
T PLN02516        161 SGIPIKGKKAVVVGRSN---------IVGLPVSLLLLKADATVTVVHSRT------------------------------  201 (299)
T ss_pred             hCCCCCCCEEEEECCCc---------cchHHHHHHHHHCCCEEEEeCCCC------------------------------
Confidence            34468999999999543         467889999999999999975432                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            .++.+.+++||+||.++..+.|-  ..+++    ++.++|||.-
T Consensus       202 ------~nl~~~~~~ADIvv~AvGk~~~i--~~~~v----k~gavVIDvG  239 (299)
T PLN02516        202 ------PDPESIVREADIVIAAAGQAMMI--KGDWI----KPGAAVIDVG  239 (299)
T ss_pred             ------CCHHHHHhhCCEEEEcCCCcCcc--CHHHc----CCCCEEEEee
Confidence                  24577789999999999999864  44444    4457999975

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.99  E-value=0.38  Score=51.19  Aligned_cols=33  Identities=12%  Similarity=0.075  Sum_probs=30.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .||+|+|+|.-|.+.|..|.+.  |.+|+++|.++
T Consensus         9 ~~v~v~G~G~sG~~~~~~l~~~--g~~v~~~d~~~   41 (468)
T PRK04690          9 RRVALWGWGREGRAAYRALRAH--LPAQALTLFCN   41 (468)
T ss_pred             CEEEEEccchhhHHHHHHHHHc--CCEEEEEcCCC
Confidence            4799999999999999999998  99999999653

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=94.98  E-value=0.081  Score=43.90  Aligned_cols=33  Identities=15%  Similarity=0.303  Sum_probs=29.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .+|.|||.|.+|..=+..|.+.  |.+|+++..+.
T Consensus         8 ~~vlVvGgG~va~~k~~~Ll~~--gA~v~vis~~~   40 (103)
T PF13241_consen    8 KRVLVVGGGPVAARKARLLLEA--GAKVTVISPEI   40 (103)
T ss_dssp             -EEEEEEESHHHHHHHHHHCCC--TBEEEEEESSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEECCch
Confidence            4799999999999999999998  89999999875

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=94.98  E-value=0.27  Score=50.65  Aligned_cols=80  Identities=13%  Similarity=-0.002  Sum_probs=60.8

Q ss_pred             CCCEEEEEe-eccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCcee
Q 011654          323 SGKKIAILG-FAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVN  401 (480)
Q Consensus       323 ~~~~v~ilG-la~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (480)
                      ..++|+|+| +.-          ..-.++..|.++|.+|.+||+...                                 
T Consensus        97 ~~~~I~IiGG~Gl----------mG~slA~~l~~~G~~V~~~d~~~~---------------------------------  133 (374)
T PRK11199         97 DLRPVVIVGGKGQ----------LGRLFAKMLTLSGYQVRILEQDDW---------------------------------  133 (374)
T ss_pred             ccceEEEEcCCCh----------hhHHHHHHHHHCCCeEEEeCCCcc---------------------------------
Confidence            347999998 644          778899999999999999997310                                 


Q ss_pred             eecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC
Q 011654          402 VVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI  449 (480)
Q Consensus       402 ~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~  449 (480)
                        ++.+++++++|+||++++.....+ -+.++.. +++.++|+|...+
T Consensus       134 --~~~~~~~~~aDlVilavP~~~~~~-~~~~l~~-l~~~~iv~Dv~Sv  177 (374)
T PRK11199        134 --DRAEDILADAGMVIVSVPIHLTEE-VIARLPP-LPEDCILVDLTSV  177 (374)
T ss_pred             --hhHHHHHhcCCEEEEeCcHHHHHH-HHHHHhC-CCCCcEEEECCCc
Confidence              145677889999999999887543 2245555 6667899999665

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.97  E-value=0.2  Score=49.43  Aligned_cols=79  Identities=20%  Similarity=0.173  Sum_probs=60.1

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      ++-++.+++|.|+|=|-         .-..+|+..|..+|+.|.+.+-..                              
T Consensus       158 ~~i~l~Gk~vvViGrs~---------iVGkPla~lL~~~~atVtv~hs~T------------------------------  198 (287)
T PRK14176        158 YGVDIEGKNAVIVGHSN---------VVGKPMAAMLLNRNATVSVCHVFT------------------------------  198 (287)
T ss_pred             cCCCCCCCEEEEECCCc---------ccHHHHHHHHHHCCCEEEEEeccC------------------------------
Confidence            34467999999999533         357889999999999999877422                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            .++.+.+++||.||.++..|.|-  +.+.+    ++.++|||.-
T Consensus       199 ------~~l~~~~~~ADIvv~AvG~p~~i--~~~~v----k~gavVIDvG  236 (287)
T PRK14176        199 ------DDLKKYTLDADILVVATGVKHLI--KADMV----KEGAVIFDVG  236 (287)
T ss_pred             ------CCHHHHHhhCCEEEEccCCcccc--CHHHc----CCCcEEEEec
Confidence                  24566789999999999999874  44333    4567999975

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=94.93  E-value=0.18  Score=50.78  Aligned_cols=89  Identities=15%  Similarity=0.081  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCC
Q 011654          307 KNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHP  386 (480)
Q Consensus       307 ~~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~  386 (480)
                      |.-+++.+ +..+-++++++|.|+|=|-         .-..+++..|.++|+.|.+..-..                   
T Consensus       198 p~avi~LL-~~~~i~l~GK~vvVIGRS~---------iVGkPla~LL~~~~ATVTicHs~T-------------------  248 (345)
T PLN02897        198 PKGCVELL-IRSGVEIAGKNAVVIGRSN---------IVGLPMSLLLQRHDATVSTVHAFT-------------------  248 (345)
T ss_pred             HHHHHHHH-HHhCCCCCCCEEEEECCCc---------cccHHHHHHHHHCCCEEEEEcCCC-------------------
Confidence            34444444 3344578999999999543         456788889999999998865322                   


Q ss_pred             CCCCCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          387 IHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                                       .++.+.++.||+||.+++++.|  +..+++    ++.++|||.-
T Consensus       249 -----------------~nl~~~~~~ADIvIsAvGkp~~--v~~d~v----k~GavVIDVG  286 (345)
T PLN02897        249 -----------------KDPEQITRKADIVIAAAGIPNL--VRGSWL----KPGAVVIDVG  286 (345)
T ss_pred             -----------------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCCEEEEcc
Confidence                             2456778999999999999998  455445    4457999975

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.93  E-value=0.2  Score=49.37  Aligned_cols=79  Identities=10%  Similarity=0.049  Sum_probs=60.5

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      ++-++.+++|.|+|=|-         .-..+|+..|..+|+.|.+.+-..                              
T Consensus       153 ~~i~l~Gk~vvViGrs~---------iVG~Pla~lL~~~~atVtv~hs~T------------------------------  193 (285)
T PRK10792        153 YGIDTYGLNAVVVGASN---------IVGRPMSLELLLAGCTVTVCHRFT------------------------------  193 (285)
T ss_pred             cCCCCCCCEEEEECCCc---------ccHHHHHHHHHHCCCeEEEEECCC------------------------------
Confidence            33467899999999533         357889999999999999875431                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            .++.+.+++||.||.+++++.|  +..+.    .++.++|||.-
T Consensus       194 ------~~l~~~~~~ADIvi~avG~p~~--v~~~~----vk~gavVIDvG  231 (285)
T PRK10792        194 ------KNLRHHVRNADLLVVAVGKPGF--IPGEW----IKPGAIVIDVG  231 (285)
T ss_pred             ------CCHHHHHhhCCEEEEcCCCccc--ccHHH----cCCCcEEEEcc
Confidence                  2467778999999999999997  44433    35567999986

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=94.92  E-value=0.19  Score=50.91  Aligned_cols=88  Identities=13%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCC
Q 011654          308 NRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPI  387 (480)
Q Consensus       308 ~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~  387 (480)
                      .-+++.+. ..+-++++++|.|+|=|-         --..+|+..|.++++.|.+..-..                    
T Consensus       216 ~avielL~-~y~i~l~GK~vvVIGRS~---------iVGkPLa~LL~~~~ATVTicHs~T--------------------  265 (364)
T PLN02616        216 KGCIELLH-RYNVEIKGKRAVVIGRSN---------IVGMPAALLLQREDATVSIVHSRT--------------------  265 (364)
T ss_pred             HHHHHHHH-HhCCCCCCCEEEEECCCc---------cccHHHHHHHHHCCCeEEEeCCCC--------------------
Confidence            33444433 344578999999999543         456788999999999999875432                    


Q ss_pred             CCCCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          388 HLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       388 ~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                                      .++.+.++.||+||.++..+.|  ++.+.+    ++.++|||.-
T Consensus       266 ----------------~nl~~~~r~ADIVIsAvGkp~~--i~~d~v----K~GAvVIDVG  303 (364)
T PLN02616        266 ----------------KNPEEITREADIIISAVGQPNM--VRGSWI----KPGAVVIDVG  303 (364)
T ss_pred             ----------------CCHHHHHhhCCEEEEcCCCcCc--CCHHHc----CCCCEEEecc
Confidence                            2456778999999999999998  455445    4557999975

>PRK05868 hypothetical protein; Validated

Probab=94.89  E-value=0.027  Score=58.02  Aligned_cols=35  Identities=17%  Similarity=0.203  Sum_probs=32.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      |++|.|||.|..|+.+|..|+++  |++|+++|+.++
T Consensus         1 ~~~V~IvGgG~aGl~~A~~L~~~--G~~v~viE~~~~   35 (372)
T PRK05868          1 MKTVVVSGASVAGTAAAYWLGRH--GYSVTMVERHPG   35 (372)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhC--CCCEEEEcCCCC
Confidence            78999999999999999999998  999999998765

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.89  E-value=0.17  Score=49.85  Aligned_cols=79  Identities=18%  Similarity=0.195  Sum_probs=59.9

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+-++++++|.|+|=+-         .-..+++..|.++|+.|.+.+-..                              
T Consensus       151 ~~i~l~Gk~vvVvGrs~---------~VG~Pla~lL~~~gAtVtv~hs~t------------------------------  191 (285)
T PRK14191        151 YHIEIKGKDVVIIGASN---------IVGKPLAMLMLNAGASVSVCHILT------------------------------  191 (285)
T ss_pred             hCCCCCCCEEEEECCCc---------hhHHHHHHHHHHCCCEEEEEeCCc------------------------------
Confidence            34467899999999542         467889999999999999874321                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            .++.+.++.||.||.++..+.|  ++.+.+    ++.++|||.-
T Consensus       192 ------~~l~~~~~~ADIvV~AvG~p~~--i~~~~v----k~GavVIDvG  229 (285)
T PRK14191        192 ------KDLSFYTQNADIVCVGVGKPDL--IKASMV----KKGAVVVDIG  229 (285)
T ss_pred             ------HHHHHHHHhCCEEEEecCCCCc--CCHHHc----CCCcEEEEee
Confidence                  2345678999999999999998  444444    4557999975

>PLN02688 pyrroline-5-carboxylate reductase

Probab=94.83  E-value=0.19  Score=48.96  Aligned_cols=99  Identities=12%  Similarity=0.184  Sum_probs=67.0

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCC----EEEEE-CCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA----KLSIY-DPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~----~V~~~-DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      ||+++|+.          ..+..+++.|.+.|.    +|.+| |+.-...+....                      .++
T Consensus         2 kI~~IG~G----------~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~----------------------~g~   49 (266)
T PLN02688          2 RVGFIGAG----------KMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQS----------------------LGV   49 (266)
T ss_pred             eEEEECCc----------HHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHH----------------------cCC
Confidence            68999973          488899999999998    89999 775332221111                      234


Q ss_pred             eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhh
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLRE  457 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~  457 (480)
                      ...++..++++++|+|+++++-..+++.- ..+...+++..+||..-+-...+.+++
T Consensus        50 ~~~~~~~e~~~~aDvVil~v~~~~~~~vl-~~l~~~~~~~~~iIs~~~g~~~~~l~~  105 (266)
T PLN02688         50 KTAASNTEVVKSSDVIILAVKPQVVKDVL-TELRPLLSKDKLLVSVAAGITLADLQE  105 (266)
T ss_pred             EEeCChHHHHhcCCEEEEEECcHHHHHHH-HHHHhhcCCCCEEEEecCCCcHHHHHH
Confidence            56678888889999999999644444422 344444555567887756566666553

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.81  E-value=0.13  Score=50.49  Aligned_cols=71  Identities=20%  Similarity=0.331  Sum_probs=53.3

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|+|||- ..+|.|+|..|.++  +..|+.+...                                 |.++.+.+++||
T Consensus       158 k~vvVvGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD  202 (284)
T PRK14170        158 KRAVVIGRSNIVGKPVAQLLLNE--NATVTIAHSR---------------------------------TKDLPQVAKEAD  202 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence            47999995 67899999999988  8899987531                                 245666689999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +||.+++-|--         ..           ..++++|.+||+.+
T Consensus       203 IvI~AvG~~~~---------i~-----------~~~vk~GavVIDvG  229 (284)
T PRK14170        203 ILVVATGLAKF---------VK-----------KDYIKPGAIVIDVG  229 (284)
T ss_pred             EEEEecCCcCc---------cC-----------HHHcCCCCEEEEcc
Confidence            99999986521         11           24567899998643

>PRK06392 homoserine dehydrogenase; Provisional

Probab=94.81  E-value=0.14  Score=51.68  Aligned_cols=21  Identities=33%  Similarity=0.555  Sum_probs=19.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIAL   22 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~   22 (480)
                      |||+|||+|.||..++..|.+
T Consensus         1 mrVaIiGfG~VG~~va~~L~~   21 (326)
T PRK06392          1 IRISIIGLGNVGLNVLRIIKS   21 (326)
T ss_pred             CEEEEECCCHHHHHHHHHHHh
Confidence            699999999999999999987

>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional

Probab=94.80  E-value=0.082  Score=53.65  Aligned_cols=68  Identities=22%  Similarity=0.409  Sum_probs=42.1

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCe---EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHHh
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIE---VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKHV   76 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~---V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a~   76 (480)
                      +||+|||+ |++|.-+...|..+ +.++   +..+....+      .|+. +...+          ..+.+. .+.++ +
T Consensus         6 ~~VaIvGATG~vG~ell~lL~~h-~~f~v~~l~~~aS~~s------aGk~-~~~~~----------~~l~v~~~~~~~-~   66 (347)
T PRK06728          6 YHVAVVGATGAVGQKIIELLEKE-TKFNIAEVTLLSSKRS------AGKT-VQFKG----------REIIIQEAKINS-F   66 (347)
T ss_pred             CEEEEEeCCCHHHHHHHHHHHHC-CCCCcccEEEEECccc------CCCC-eeeCC----------cceEEEeCCHHH-h
Confidence            58999996 99999999999964 3677   555543311      1211 11101          123322 24433 6


Q ss_pred             ccCcEEEEeccC
Q 011654           77 AEADIVFVSVNT   88 (480)
Q Consensus        77 ~~aDvVii~Vpt   88 (480)
                      .++|++|.|+|.
T Consensus        67 ~~~Divf~a~~~   78 (347)
T PRK06728         67 EGVDIAFFSAGG   78 (347)
T ss_pred             cCCCEEEECCCh
Confidence            889999999874

>PLN00203 glutamyl-tRNA reductase

Probab=94.78  E-value=0.72  Score=49.57  Aligned_cols=110  Identities=9%  Similarity=0.031  Sum_probs=69.9

Q ss_pred             HHHHHHHHhcC-cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-EEEEECCCCChHHH-HHhhhccccCCCCC
Q 011654          310 FVNRIVSSMFN-TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA-KLSIYDPQVTEDQI-QRDLSMKKFDWDHP  386 (480)
Q Consensus       310 ~~~~~~~~l~~-~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~~~~~~-~~~~~~~~~~~~~~  386 (480)
                      .++...+.++. ++.+++|+|+|..          ..+..+++.|...|+ +|.++++....... ...++         
T Consensus       251 Av~la~~~~~~~~l~~kkVlVIGAG----------~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~---------  311 (519)
T PLN00203        251 AVELALMKLPESSHASARVLVIGAG----------KMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFP---------  311 (519)
T ss_pred             HHHHHHHhcCCCCCCCCEEEEEeCH----------HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhC---------
Confidence            34444444432 4789999999974          488889999999996 69999997654222 22110         


Q ss_pred             CCCCCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcC------CCCEEEEcC
Q 011654          387 IHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMR------KPAYIFDGR  447 (480)
Q Consensus       387 ~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~------~~~~i~D~~  447 (480)
                              ...-.+...++..+++.++|+||.+|.-+.+- +..+.+...++      +|.+|||..
T Consensus       312 --------g~~i~~~~~~dl~~al~~aDVVIsAT~s~~pv-I~~e~l~~~~~~~~~~~~~~~~IDLA  369 (519)
T PLN00203        312 --------DVEIIYKPLDEMLACAAEADVVFTSTSSETPL-FLKEHVEALPPASDTVGGKRLFVDIS  369 (519)
T ss_pred             --------CCceEeecHhhHHHHHhcCCEEEEccCCCCCe-eCHHHHHHhhhcccccCCCeEEEEeC
Confidence                    00001112356778899999999999665542 34445544331      466999974

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=94.78  E-value=0.11  Score=52.92  Aligned_cols=41  Identities=20%  Similarity=0.318  Sum_probs=34.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~   44 (480)
                      .||.|||+|.+|.++|..|+..  |. +++++|.|.-....+++
T Consensus        25 ~~VlVvG~GglGs~va~~La~a--Gvg~i~lvD~D~Ve~sNL~R   66 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRA--GVGKVTIVDRDYVEWSNLQR   66 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHc--CCCeEEEEeCCccCHHHcCc
Confidence            4799999999999999999998  77 89999997644444443

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=94.78  E-value=0.069  Score=50.85  Aligned_cols=72  Identities=17%  Similarity=0.135  Sum_probs=49.6

Q ss_pred             EEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHH--HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            4 ICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVS--RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         4 I~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |+|+|+ |.+|.+++..|.+.  +++|.+.-|++.  ..+.+......+-+-+            +.-..++.++++++|
T Consensus         1 I~V~GatG~~G~~v~~~L~~~--~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d------------~~~~~~l~~al~g~d   66 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALLSA--GFSVRALVRDPSSDRAQQLQALGAEVVEAD------------YDDPESLVAALKGVD   66 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT--TGCEEEEESSSHHHHHHHHHHTTTEEEES-------------TT-HHHHHHHHTTCS
T ss_pred             CEEECCccHHHHHHHHHHHhC--CCCcEEEEeccchhhhhhhhcccceEeecc------------cCCHHHHHHHHcCCc
Confidence            789996 99999999999997  999999999863  4555553211111111            111133556789999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      .||++++..
T Consensus        67 ~v~~~~~~~   75 (233)
T PF05368_consen   67 AVFSVTPPS   75 (233)
T ss_dssp             EEEEESSCS
T ss_pred             eEEeecCcc
Confidence            999998743

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.76  E-value=0.14  Score=50.37  Aligned_cols=70  Identities=20%  Similarity=0.405  Sum_probs=52.7

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|||- ..+|.|+|..|.++  |..|+.+...                                 |.++++..++||
T Consensus       157 k~vvViGrS~iVGkPla~lL~~~--~atVtichs~---------------------------------T~~l~~~~~~AD  201 (282)
T PRK14169        157 KRVVIVGRSNIVGRPLAGLMVNH--DATVTIAHSK---------------------------------TRNLKQLTKEAD  201 (282)
T ss_pred             CEEEEECCCccchHHHHHHHHHC--CCEEEEECCC---------------------------------CCCHHHHHhhCC
Confidence            47999995 67899999999988  8899977531                                 245666688999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK  126 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~  126 (480)
                      +||.+++-|--         .+           ..++++|++||+.
T Consensus       202 IvI~AvG~p~~---------i~-----------~~~vk~GavVIDv  227 (282)
T PRK14169        202 ILVVAVGVPHF---------IG-----------ADAVKPGAVVIDV  227 (282)
T ss_pred             EEEEccCCcCc---------cC-----------HHHcCCCcEEEEe
Confidence            99999986521         11           2357889999864

>PRK06753 hypothetical protein; Provisional

Probab=94.76  E-value=0.033  Score=57.09  Aligned_cols=34  Identities=35%  Similarity=0.394  Sum_probs=32.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      |+|.|||.|..|+.+|..|+++  |++|+++++++.
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~--g~~v~v~E~~~~   34 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQ--GHEVKVFEKNES   34 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCcEEEEecCCc
Confidence            7999999999999999999998  999999998865

>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]

Probab=94.75  E-value=0.51  Score=47.29  Aligned_cols=87  Identities=21%  Similarity=0.309  Sum_probs=57.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHHHHHH-H-CCCCCC--CC-CChHHHHHhhcCCCEEEecCHHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVV-DISVSRIAAW-N-GDQLPI--YE-PGLEDVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~v~~l-~-~~~~~~--~e-~~l~~l~~~~~~~~l~~t~d~~~a   75 (480)
                      -+|++||+|.||+-+....++- ||.+|..+ |++....... . .+....  .| ......-..+..|++.+|+|.+..
T Consensus        18 iRVGlIGAG~mG~~ivtQi~~m-~Gm~vvaisd~~~~~ak~A~~~ag~~~~~~~e~~~~s~~a~Ai~aGKi~vT~D~~~i   96 (438)
T COG4091          18 IRVGLIGAGEMGTGIVTQIASM-PGMEVVAISDRNLDAAKRAYDRAGGPKIEAVEADDASKMADAIEAGKIAVTDDAELI   96 (438)
T ss_pred             eEEEEecccccchHHHHHHhhc-CCceEEEEecccchHHHHHHHHhcCCcccccccchhhHHHHHHhcCcEEEecchhhh
Confidence            3799999999999999999864 79997764 7776544332 2 122211  11 122333334567889999988775


Q ss_pred             hc--cCcEEEEeccCC
Q 011654           76 VA--EADIVFVSVNTP   89 (480)
Q Consensus        76 ~~--~aDvVii~Vptp   89 (480)
                      +.  ..|+||-++.-|
T Consensus        97 ~~~~~IdvIIdATG~p  112 (438)
T COG4091          97 IANDLIDVIIDATGVP  112 (438)
T ss_pred             hcCCcceEEEEcCCCc
Confidence            43  557888887655

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.72  E-value=0.26  Score=48.60  Aligned_cols=79  Identities=18%  Similarity=0.148  Sum_probs=59.9

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhC----CCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGD----KAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMS  393 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~----g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (480)
                      .+-++++++|.|+|=|-         .-..+|+..|.++    ++.|++..-..                          
T Consensus       147 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~~~~~AtVtvchs~T--------------------------  191 (287)
T PRK14181        147 YEIPLHGRHVAIVGRSN---------IVGKPLAALLMQKHPDTNATVTLLHSQS--------------------------  191 (287)
T ss_pred             hCCCCCCCEEEEECCCc---------cchHHHHHHHHhCcCCCCCEEEEeCCCC--------------------------
Confidence            34467999999999543         4678899999988    78988754321                          


Q ss_pred             CCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          394 PPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                                .++.+.++.||+||.++..+.|  +..+++    ++.++|||.-
T Consensus       192 ----------~~l~~~~~~ADIvV~AvG~p~~--i~~~~i----k~GavVIDvG  229 (287)
T PRK14181        192 ----------ENLTEILKTADIIIAAIGVPLF--IKEEMI----AEKAVIVDVG  229 (287)
T ss_pred             ----------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCCEEEEec
Confidence                      2467778999999999999998  454445    4457999975

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.72  E-value=0.12  Score=51.08  Aligned_cols=71  Identities=21%  Similarity=0.339  Sum_probs=53.2

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|||- ..+|.|+|..|..+  |..|+.+...                                 |.++.+.+++||
T Consensus       159 k~vvVIGrS~iVGkPla~lL~~~--~atVtv~hs~---------------------------------T~~l~~~~~~AD  203 (297)
T PRK14186        159 KKAVVVGRSILVGKPLALMLLAA--NATVTIAHSR---------------------------------TQDLASITREAD  203 (297)
T ss_pred             CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence            47999994 67899999999988  8899887531                                 235666678999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +||.+++-|--         .+           ..++++|.+||+..
T Consensus       204 IvIsAvGkp~~---------i~-----------~~~ik~gavVIDvG  230 (297)
T PRK14186        204 ILVAAAGRPNL---------IG-----------AEMVKPGAVVVDVG  230 (297)
T ss_pred             EEEEccCCcCc---------cC-----------HHHcCCCCEEEEec
Confidence            99999986521         11           24568899998643

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.71  E-value=0.31  Score=46.33  Aligned_cols=119  Identities=14%  Similarity=0.184  Sum_probs=86.2

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      +|+++||.-          +...+++.|+.+|.+|.+||-.....+-...                      ...+-.+|
T Consensus         2 ~iGmiGLGr----------MG~n~v~rl~~~ghdvV~yD~n~~av~~~~~----------------------~ga~~a~s   49 (300)
T COG1023           2 QIGMIGLGR----------MGANLVRRLLDGGHDVVGYDVNQTAVEELKD----------------------EGATGAAS   49 (300)
T ss_pred             cceeeccch----------hhHHHHHHHHhCCCeEEEEcCCHHHHHHHHh----------------------cCCccccC
Confidence            567778754          6788999999999999999987654332221                      12334455


Q ss_pred             HHHhc---ccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecCCCCcCcccc
Q 011654          406 AYQAA---KDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIGKPLDPWHKDT  476 (480)
Q Consensus       406 ~~~a~---~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~~~~~~~~~~  476 (480)
                      +++-+   ..--+|-++++|-..-+--.++++..+...-+|||+-|-.=++      .+.+.|+.|.-.|.+.-.|-.++
T Consensus        50 l~el~~~L~~pr~vWlMvPag~it~~vi~~la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~  129 (300)
T COG1023          50 LDELVAKLSAPRIVWLMVPAGDITDAVIDDLAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAER  129 (300)
T ss_pred             HHHHHHhcCCCcEEEEEccCCCchHHHHHHHHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhc
Confidence            55544   3567899999998765555677888887666999999976433      35568999999999888887653

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.71  E-value=0.13  Score=50.54  Aligned_cols=70  Identities=26%  Similarity=0.424  Sum_probs=52.8

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|.|||- ..+|.|+|..|.++  |..|+.+...                                 |.|+.+..+.||
T Consensus       159 k~vvViGrS~~VGkPla~lL~~~--~ATVt~chs~---------------------------------T~dl~~~~k~AD  203 (282)
T PRK14180        159 AYAVVVGASNVVGKPVSQLLLNA--KATVTTCHRF---------------------------------TTDLKSHTTKAD  203 (282)
T ss_pred             CEEEEECCCCcchHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHhhhcC
Confidence            47999995 67899999999988  8899988631                                 245566678999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK  126 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~  126 (480)
                      +||.+++-|--         ..           ..++++|.+||+.
T Consensus       204 IvIsAvGkp~~---------i~-----------~~~vk~gavVIDv  229 (282)
T PRK14180        204 ILIVAVGKPNF---------IT-----------ADMVKEGAVVIDV  229 (282)
T ss_pred             EEEEccCCcCc---------CC-----------HHHcCCCcEEEEe
Confidence            99999986621         11           2346789999864

>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=94.71  E-value=0.19  Score=51.44  Aligned_cols=33  Identities=21%  Similarity=0.312  Sum_probs=24.9

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCe---EEEEeC
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIE---VAVVDI   34 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~---V~~~D~   34 (480)
                      ||+|+|||+ |++|.-|...+..+ +.+.   +..+..
T Consensus         1 m~~VAIVGATG~vG~ell~llL~~-~~f~~~~l~~~ss   37 (369)
T PRK06598          1 MKKVGFVGWRGMVGSVLMQRMVEE-NDFDLIEPVFFST   37 (369)
T ss_pred             CeEEEEEeCCCHHHHHHHHHHHhC-CCCCcCcEEEecc
Confidence            789999996 99999999855544 3666   666544

>PRK00536 speE spermidine synthase; Provisional

Probab=94.70  E-value=0.64  Score=45.35  Aligned_cols=101  Identities=8%  Similarity=0.094  Sum_probs=67.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~aD   80 (480)
                      .||-|||.|--|.  +..+.++  ..+|+.+|+|++.++..++--     |.+..   .....+++......+.- ..-|
T Consensus        74 k~VLIiGGGDGg~--~REvLkh--~~~v~mVeID~~Vv~~~k~~l-----P~~~~---~~~DpRv~l~~~~~~~~~~~fD  141 (262)
T PRK00536         74 KEVLIVDGFDLEL--AHQLFKY--DTHVDFVQADEKILDSFISFF-----PHFHE---VKNNKNFTHAKQLLDLDIKKYD  141 (262)
T ss_pred             CeEEEEcCCchHH--HHHHHCc--CCeeEEEECCHHHHHHHHHHC-----HHHHH---hhcCCCEEEeehhhhccCCcCC
Confidence            5899999999876  6777765  249999999999998877621     11111   22345666554443322 4689


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCcc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPV  131 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~  131 (480)
                      +||+-.. +            +    .+-.+.+.+.|+++-+++..|+.+-
T Consensus       142 VIIvDs~-~------------~----~~fy~~~~~~L~~~Gi~v~Qs~sp~  175 (262)
T PRK00536        142 LIICLQE-P------------D----IHKIDGLKRMLKEDGVFISVAKHPL  175 (262)
T ss_pred             EEEEcCC-C------------C----hHHHHHHHHhcCCCcEEEECCCCcc
Confidence            9987731 1            1    2345667888999999988777543

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=94.69  E-value=0.097  Score=51.45  Aligned_cols=35  Identities=17%  Similarity=0.170  Sum_probs=31.4

Q ss_pred             EEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHH
Q 011654            3 KICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRI   39 (480)
Q Consensus         3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v   39 (480)
                      +|.|+|+ |++|..++..|.+.  |++|++..|++++.
T Consensus         1 ~ilVtGatG~iG~~vv~~L~~~--g~~V~~~~R~~~~~   36 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLLQAA--SVPFLVASRSSSSS   36 (285)
T ss_pred             CEEEEcCCChHHHHHHHHHHhC--CCcEEEEeCCCccc
Confidence            5889987 99999999999998  99999999998754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=94.67  E-value=0.12  Score=51.90  Aligned_cols=108  Identities=14%  Similarity=0.078  Sum_probs=69.2

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      +|+|+|+..          ....++..|.+.|.+|.+||..-...+.....+   .   ++... +. .....++....+
T Consensus         3 kI~iiG~G~----------mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~---~---~~~~~-~~-~~~~~~~~~~~~   64 (325)
T PRK00094          3 KIAVLGAGS----------WGTALAIVLARNGHDVTLWARDPEQAAEINADR---E---NPRYL-PG-IKLPDNLRATTD   64 (325)
T ss_pred             EEEEECCCH----------HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcC---c---ccccC-CC-CcCCCCeEEeCC
Confidence            799999854          889999999999999999998543322111110   0   00000 00 011124556678


Q ss_pred             HHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011654          406 AYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDV  452 (480)
Q Consensus       406 ~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~  452 (480)
                      +.++++++|+|++++......+ -++.+.....+..+|++..|-+++
T Consensus        65 ~~~~~~~~D~vi~~v~~~~~~~-v~~~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         65 LAEALADADLILVAVPSQALRE-VLKQLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             HHHHHhCCCEEEEeCCHHHHHH-HHHHHHhhcCCCCEEEEEeecccC
Confidence            8888999999999999865443 224555555555689999865554

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=94.63  E-value=0.14  Score=50.83  Aligned_cols=71  Identities=24%  Similarity=0.298  Sum_probs=53.6

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|||- ..+|.|+|..|.++  |..|+.+...                                 |.++++.+++||
T Consensus       168 k~vvVIGRS~iVGkPla~lL~~~--~ATVtvchs~---------------------------------T~nl~~~~~~AD  212 (299)
T PLN02516        168 KKAVVVGRSNIVGLPVSLLLLKA--DATVTVVHSR---------------------------------TPDPESIVREAD  212 (299)
T ss_pred             CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence            47999995 67899999999988  8899988641                                 235666789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +||.+++.|.-         ..           ..++++|++||+.+
T Consensus       213 Ivv~AvGk~~~---------i~-----------~~~vk~gavVIDvG  239 (299)
T PLN02516        213 IVIAAAGQAMM---------IK-----------GDWIKPGAAVIDVG  239 (299)
T ss_pred             EEEEcCCCcCc---------cC-----------HHHcCCCCEEEEee
Confidence            99999986521         11           24568899998643

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.60  E-value=0.15  Score=50.18  Aligned_cols=71  Identities=23%  Similarity=0.336  Sum_probs=53.3

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|||- ..+|.|+|..|.++  +..|+.+...                                 |.++++..++||
T Consensus       158 k~vvVvGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~nl~~~~~~AD  202 (282)
T PRK14166        158 KDAVIIGASNIVGRPMATMLLNA--GATVSVCHIK---------------------------------TKDLSLYTRQAD  202 (282)
T ss_pred             CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence            47999995 67899999999987  8899987741                                 245666678999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +||.+++-|--         .+           ....++|.+||+.+
T Consensus       203 IvIsAvGkp~~---------i~-----------~~~vk~GavVIDvG  229 (282)
T PRK14166        203 LIIVAAGCVNL---------LR-----------SDMVKEGVIVVDVG  229 (282)
T ss_pred             EEEEcCCCcCc---------cC-----------HHHcCCCCEEEEec
Confidence            99999986521         11           23467899998643

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.59  E-value=0.17  Score=49.81  Aligned_cols=72  Identities=15%  Similarity=0.282  Sum_probs=54.4

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|.|||- ..+|.|+|..|.++  |..|+.++..                                 |.|+++..++||
T Consensus       160 k~vvViGrS~iVGkPla~lL~~~--~atVt~chs~---------------------------------T~~l~~~~~~AD  204 (284)
T PRK14177        160 KNAVVVGRSPILGKPMAMLLTEM--NATVTLCHSK---------------------------------TQNLPSIVRQAD  204 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence            47999994 77899999999988  8899988731                                 245666688999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      +||.+++.|--         ..           ..++++|++||+..+
T Consensus       205 IvIsAvGk~~~---------i~-----------~~~ik~gavVIDvGi  232 (284)
T PRK14177        205 IIVGAVGKPEF---------IK-----------ADWISEGAVLLDAGY  232 (284)
T ss_pred             EEEEeCCCcCc---------cC-----------HHHcCCCCEEEEecC
Confidence            99999986521         11           245789999997544

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=94.56  E-value=0.16  Score=50.86  Aligned_cols=95  Identities=15%  Similarity=0.124  Sum_probs=64.1

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC--EEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCcee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA--KLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVN  401 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (480)
                      ..+|+|+|+.-          .+..++..|.+.|.  +|.+||+.....+....++                    ....
T Consensus         6 ~~~I~IIG~G~----------mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g--------------------~~~~   55 (307)
T PRK07502          6 FDRVALIGIGL----------IGSSLARAIRRLGLAGEIVGADRSAETRARARELG--------------------LGDR   55 (307)
T ss_pred             CcEEEEEeeCH----------HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCC--------------------CCce
Confidence            46899999743          77889999998884  8999999644322222111                    0012


Q ss_pred             eecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC
Q 011654          402 VVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI  449 (480)
Q Consensus       402 ~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~  449 (480)
                      ...+.+++++++|+||++|+-....++ .+.+...+++..+|+|.-++
T Consensus        56 ~~~~~~~~~~~aDvViiavp~~~~~~v-~~~l~~~l~~~~iv~dvgs~  102 (307)
T PRK07502         56 VTTSAAEAVKGADLVILCVPVGASGAV-AAEIAPHLKPGAIVTDVGSV  102 (307)
T ss_pred             ecCCHHHHhcCCCEEEECCCHHHHHHH-HHHHHhhCCCCCEEEeCccc
Confidence            345677888999999999987654432 24555566666689997554

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.49  E-value=0.15  Score=51.03  Aligned_cols=85  Identities=15%  Similarity=0.160  Sum_probs=63.5

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      .+.+|+|+|.          .+....++..|.+.|.+|.+||....                                  
T Consensus         3 ~~m~I~iiG~----------G~~G~~lA~~l~~~G~~V~~~~r~~~----------------------------------   38 (308)
T PRK14619          3 QPKTIAILGA----------GAWGSTLAGLASANGHRVRVWSRRSG----------------------------------   38 (308)
T ss_pred             CCCEEEEECc----------cHHHHHHHHHHHHCCCEEEEEeCCCC----------------------------------
Confidence            3568999998          45899999999999999999997421                                  


Q ss_pred             ecCHHHhcccccEEEEEecccccccccHHHHHH-hcCCCCEEEEcCCCCChH
Q 011654          403 VWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFD-NMRKPAYIFDGRNILDVE  453 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~-~~~~~~~i~D~~~~~~~~  453 (480)
                       .++.++++++|+|+++++.+..+++- +.+.. .+++..+|+|+.+=++++
T Consensus        39 -~~~~~~~~~advvi~~vp~~~~~~v~-~~l~~~~~~~~~ivi~~s~gi~~~   88 (308)
T PRK14619         39 -LSLAAVLADADVIVSAVSMKGVRPVA-EQVQALNLPPETIIVTATKGLDPE   88 (308)
T ss_pred             -CCHHHHHhcCCEEEEECChHHHHHHH-HHHHHhcCCCCcEEEEeCCcccCC
Confidence             25678889999999999987655532 45544 245556899987644443

>TIGR03466 HpnA hopanoid-associated sugar epimerase

Probab=94.48  E-value=0.033  Score=55.58  Aligned_cols=72  Identities=22%  Similarity=0.287  Sum_probs=47.3

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||.|.| .|++|..++..|+++  |++|++++++++....+........            .+.+.-..++.++++.+|
T Consensus         1 ~~vlItG~~G~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~------------~~D~~~~~~l~~~~~~~d   66 (328)
T TIGR03466         1 MKVLVTGATGFVGSAVVRLLLEQ--GEEVRVLVRPTSDRRNLEGLDVEIV------------EGDLRDPASLRKAVAGCR   66 (328)
T ss_pred             CeEEEECCccchhHHHHHHHHHC--CCEEEEEEecCccccccccCCceEE------------EeeCCCHHHHHHHHhCCC
Confidence            6899998 599999999999998  9999999998765332221100000            011111123445567889


Q ss_pred             EEEEecc
Q 011654           81 IVFVSVN   87 (480)
Q Consensus        81 vVii~Vp   87 (480)
                      +||-+..
T Consensus        67 ~vi~~a~   73 (328)
T TIGR03466        67 ALFHVAA   73 (328)
T ss_pred             EEEEece
Confidence            9988864

The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=94.48  E-value=0.28  Score=46.85  Aligned_cols=74  Identities=20%  Similarity=0.249  Sum_probs=47.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC---eEEEEeCC----HHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI---EVAVVDIS----VSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK   74 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~---~V~~~D~~----~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~   74 (480)
                      +||.|+|+|.+|..+|..|...  |.   +++++|++    .++.+.+...        ..++.+......  ...++.+
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~--G~~~~~i~ivdr~gl~~~~r~~~L~~~--------~~~la~~~~~~~--~~~~l~~   93 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAA--GAKPENIVVVDSKGVIYEGREDDLNPD--------KNEIAKETNPEK--TGGTLKE   93 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHc--CcCcceEEEEeCCCccccccchhhhHH--------HHHHHHHhccCc--ccCCHHH
Confidence            4799999999999999999987  65   69999998    3432211110        011111100001  1135666


Q ss_pred             HhccCcEEEEecc
Q 011654           75 HVAEADIVFVSVN   87 (480)
Q Consensus        75 a~~~aDvVii~Vp   87 (480)
                      ++.++|++|=++|
T Consensus        94 ~l~~~dvlIgaT~  106 (226)
T cd05311          94 ALKGADVFIGVSR  106 (226)
T ss_pred             HHhcCCEEEeCCC
Confidence            7889999998876

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.42  E-value=0.15  Score=50.02  Aligned_cols=53  Identities=17%  Similarity=0.335  Sum_probs=43.4

Q ss_pred             cEEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAG-YVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|.|||-+ .+|.|+|..|...  |..|+....+.                                 .++.+.+++||
T Consensus       153 k~V~ViGrs~~vGrpla~lL~~~--~atVtv~hs~t---------------------------------~~L~~~~~~AD  197 (279)
T PRK14178        153 KRAVVVGRSIDVGRPMAALLLNA--DATVTICHSKT---------------------------------ENLKAELRQAD  197 (279)
T ss_pred             CEEEEECCCccccHHHHHHHHhC--CCeeEEEecCh---------------------------------hHHHHHHhhCC
Confidence            479999998 9999999999987  88999888532                                 23455678999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||.+++-|
T Consensus       198 IvI~Avgk~  206 (279)
T PRK14178        198 ILVSAAGKA  206 (279)
T ss_pred             EEEECCCcc
Confidence            999999754

>PRK09414 glutamate dehydrogenase; Provisional

Probab=94.41  E-value=0.48  Score=49.78  Aligned_cols=124  Identities=13%  Similarity=0.117  Sum_probs=71.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEE-e----------CCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEe
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVV-D----------ISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFS   69 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D----------~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t   69 (480)
                      ++|+|.|.|.||..+|..|...  |.+|+++ |          +|.+.+..+++.. ..     +..+...   .+.+..
T Consensus       233 ~rVaIqGfGnVG~~~A~~L~~~--GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~-----l~~~~~~---~~~~~i  302 (445)
T PRK09414        233 KRVVVSGSGNVAIYAIEKAQQL--GAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGR-----ISEYAEE---FGAEYL  302 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCc-----hhhhhhh---cCCeec
Confidence            5899999999999999999988  8999988 8          7777766665421 11     1111100   011222


Q ss_pred             cCHHHHh-ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCC
Q 011654           70 TDIEKHV-AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREI  148 (480)
Q Consensus        70 ~d~~~a~-~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~  148 (480)
                      + .++.. .+||+++-|-.+..          .+    .+....+..   .+.-+|.+.-..|-| ..-.++|.+.+   
T Consensus       303 ~-~~~i~~~d~DVliPaAl~n~----------It----~~~a~~i~~---~~akiIvEgAN~p~t-~~A~~~L~~rG---  360 (445)
T PRK09414        303 E-GGSPWSVPCDIALPCATQNE----------LD----EEDAKTLIA---NGVKAVAEGANMPST-PEAIEVFLEAG---  360 (445)
T ss_pred             C-CccccccCCcEEEecCCcCc----------CC----HHHHHHHHH---cCCeEEEcCCCCCCC-HHHHHHHHHCC---
Confidence            2 22222 37999999965432          12    122233321   234455565554444 44556777654   


Q ss_pred             ceeEeeCCcccc
Q 011654          149 KYQILSNPEFLA  160 (480)
Q Consensus       149 ~~~v~~~Pe~~~  160 (480)
                         +.+.|..+.
T Consensus       361 ---I~~vPD~la  369 (445)
T PRK09414        361 ---VLFAPGKAA  369 (445)
T ss_pred             ---cEEECchhh
Confidence               556787654

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=94.40  E-value=0.44  Score=45.69  Aligned_cols=41  Identities=20%  Similarity=0.382  Sum_probs=32.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~   44 (480)
                      .+|.|+|+|.+|..+|..|++.  |. +++++|.+.=....+++
T Consensus        12 ~~VlVvG~GGvGs~va~~Lar~--GVg~i~LvD~D~V~~sNlnR   53 (231)
T cd00755          12 AHVAVVGLGGVGSWAAEALARS--GVGKLTLIDFDVVCVSNLNR   53 (231)
T ss_pred             CCEEEECCCHHHHHHHHHHHHc--CCCEEEEECCCEECchhhcc
Confidence            4799999999999999999998  65 89999977544444443

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PLN00141 Tic62-NAD(P)-related group II protein; Provisional

Probab=94.38  E-value=0.096  Score=50.54  Aligned_cols=40  Identities=18%  Similarity=0.155  Sum_probs=35.2

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAW   42 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l   42 (480)
                      +|+|.|+|+ |.+|..++..|+++  |++|+++.+++++.+.+
T Consensus        17 ~~~ilItGasG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~   57 (251)
T PLN00141         17 TKTVFVAGATGRTGKRIVEQLLAK--GFAVKAGVRDVDKAKTS   57 (251)
T ss_pred             CCeEEEECCCcHHHHHHHHHHHhC--CCEEEEEecCHHHHHHh
Confidence            478999995 99999999999998  99999999998876544

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.37  E-value=0.32  Score=48.20  Aligned_cols=79  Identities=11%  Similarity=0.098  Sum_probs=59.7

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhC----CCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGD----KAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMS  393 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~----g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (480)
                      .+-++++++|.|+|=|-         .-..+|+..|.++    ++.|++..-.                           
T Consensus       155 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~~~~~atVtv~hs~---------------------------  198 (297)
T PRK14168        155 SGVETSGAEVVVVGRSN---------IVGKPIANMMTQKGPGANATVTIVHTR---------------------------  198 (297)
T ss_pred             hCCCCCCCEEEEECCCC---------cccHHHHHHHHhcccCCCCEEEEecCC---------------------------
Confidence            34468999999999643         5678899999988    7999885322                           


Q ss_pred             CCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          394 PPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                               +.++.+.++.||+||.++..+.|  ++.+++    ++.++|||.-
T Consensus       199 ---------T~~l~~~~~~ADIvVsAvGkp~~--i~~~~i----k~gavVIDvG  237 (297)
T PRK14168        199 ---------SKNLARHCQRADILIVAAGVPNL--VKPEWI----KPGATVIDVG  237 (297)
T ss_pred             ---------CcCHHHHHhhCCEEEEecCCcCc--cCHHHc----CCCCEEEecC
Confidence                     12466778999999999999998  455455    4457999984

>PRK08655 prephenate dehydrogenase; Provisional

Probab=94.37  E-value=0.18  Score=53.17  Aligned_cols=91  Identities=18%  Similarity=0.195  Sum_probs=65.7

Q ss_pred             EEEEEe-eccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChH-HHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          326 KIAILG-FAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTED-QIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       326 ~v~ilG-la~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      +|+|+| +.          ..+..+++.|.+.|.+|.+||+..... .....+                      ++.+.
T Consensus         2 kI~IIGG~G----------~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~----------------------gv~~~   49 (437)
T PRK08655          2 KISIIGGTG----------GLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKEL----------------------GVEYA   49 (437)
T ss_pred             EEEEEecCC----------HHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHc----------------------CCeec
Confidence            688886 43          377889999999999999999754321 111111                      23456


Q ss_pred             cCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC
Q 011654          404 WDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI  449 (480)
Q Consensus       404 ~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~  449 (480)
                      ++..++++++|+|+++++-+...+ -.+++...+++..+|+|..++
T Consensus        50 ~~~~e~~~~aDvVIlavp~~~~~~-vl~~l~~~l~~~~iViDvsSv   94 (437)
T PRK08655         50 NDNIDAAKDADIVIISVPINVTED-VIKEVAPHVKEGSLLMDVTSV   94 (437)
T ss_pred             cCHHHHhccCCEEEEecCHHHHHH-HHHHHHhhCCCCCEEEEcccc
Confidence            678888999999999998765543 235666777777799999985

>PTZ00188 adrenodoxin reductase; Provisional

Probab=94.37  E-value=0.091  Score=55.67  Aligned_cols=86  Identities=13%  Similarity=0.101  Sum_probs=56.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh----hcC------CCEEEecC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ----CRG------RNLFFSTD   71 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~----~~~------~~l~~t~d   71 (480)
                      .||+|||.|.-|+..|..|+++ .|++|++|++.+.---.++-+..|.+ +....+...    ...      +++.+..+
T Consensus        40 krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~GVaPdh-~~~k~v~~~f~~~~~~~~v~f~gnv~VG~D  117 (506)
T PTZ00188         40 FKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDH-IHVKNTYKTFDPVFLSPNYRFFGNVHVGVD  117 (506)
T ss_pred             CEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEEeCCCCC-ccHHHHHHHHHHHHhhCCeEEEeeeEecCc
Confidence            4899999999999999977643 28999999998765544454544433 333333211    111      23344343


Q ss_pred             --HHHHhccCcEEEEeccCC
Q 011654           72 --IEKHVAEADIVFVSVNTP   89 (480)
Q Consensus        72 --~~~a~~~aDvVii~Vptp   89 (480)
                        .++..+..|.||+++...
T Consensus       118 vt~eeL~~~YDAVIlAtGA~  137 (506)
T PTZ00188        118 LKMEELRNHYNCVIFCCGAS  137 (506)
T ss_pred             cCHHHHHhcCCEEEEEcCCC
Confidence              566557899999998754

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=94.35  E-value=0.17  Score=50.45  Aligned_cols=86  Identities=15%  Similarity=0.196  Sum_probs=60.3

Q ss_pred             HHHHHHHHHhCCCEEEEECCCCCh--HHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecCHHHhcccccEEEEEeccc
Q 011654          346 AIDVCKGLLGDKAKLSIYDPQVTE--DQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWD  423 (480)
Q Consensus       346 ~~~l~~~L~~~g~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~  423 (480)
                      ...+++.|.++|++|.+||+.-..  .+.+..+.                   ..+....+++.++++++|+|++++.-+
T Consensus        32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~La-------------------eaGA~~AaS~aEAAa~ADVVIL~LPd~   92 (341)
T TIGR01724        32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVE-------------------DAGVKVVSDDKEAAKHGEIHVLFTPFG   92 (341)
T ss_pred             HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHH-------------------HCCCeecCCHHHHHhCCCEEEEecCCH
Confidence            478999999999999999986432  11111111                   124566788999999999999999876


Q ss_pred             c-cccccHHHHHHhcCCCCEEEEcCCCCC
Q 011654          424 E-FKTLDYQKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       424 ~-~~~~~~~~~~~~~~~~~~i~D~~~~~~  451 (480)
                      + -+++- ..+...+++..+|||+.-+-+
T Consensus        93 aaV~eVl-~GLaa~L~~GaIVID~STIsP  120 (341)
T TIGR01724        93 KGTFSIA-RTIIEHVPENAVICNTCTVSP  120 (341)
T ss_pred             HHHHHHH-HHHHhcCCCCCEEEECCCCCH
Confidence            5 33432 456677777789999955543

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=94.35  E-value=0.36  Score=50.62  Aligned_cols=114  Identities=16%  Similarity=0.165  Sum_probs=74.4

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-EEEEECCCCChHH-HHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA-KLSIYDPQVTEDQ-IQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      ++.+++|+|+|..          ..+..++..|...|+ +|.+++....... +...++                    .
T Consensus       179 ~~~~~~vlViGaG----------~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g--------------------~  228 (423)
T PRK00045        179 DLSGKKVLVIGAG----------EMGELVAKHLAEKGVRKITVANRTLERAEELAEEFG--------------------G  228 (423)
T ss_pred             CccCCEEEEECch----------HHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC--------------------C
Confidence            4678999999963          477888999999997 7999999654321 222221                    0


Q ss_pred             ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhc----CCCCEEEEcCC--CCChHHHhhcCcEEEEe
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNM----RKPAYIFDGRN--ILDVEKLREIGFIVYSI  465 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~----~~~~~i~D~~~--~~~~~~~~~~g~~y~~i  465 (480)
                      .....++..+++.++|+||.+|..+.+- ++.+.+...+    ..|.+++|...  =++++-..-.|..++.|
T Consensus       229 ~~~~~~~~~~~l~~aDvVI~aT~s~~~~-i~~~~l~~~~~~~~~~~~vviDla~Prdid~~v~~l~~v~l~~v  300 (423)
T PRK00045        229 EAIPLDELPEALAEADIVISSTGAPHPI-IGKGMVERALKARRHRPLLLVDLAVPRDIEPEVGELPGVYLYDV  300 (423)
T ss_pred             cEeeHHHHHHHhccCCEEEECCCCCCcE-EcHHHHHHHHhhccCCCeEEEEeCCCCCCcccccccCCeEEEEH
Confidence            1111245677889999999999887754 4555665543    24679999975  34443322235555554

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.33  E-value=0.18  Score=49.93  Aligned_cols=70  Identities=21%  Similarity=0.334  Sum_probs=53.0

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|||- ..+|.|+|..|.++  +..|+.+...                                 |.++.+.+++||
T Consensus       161 k~vvViGrS~iVGkPla~lL~~~--~aTVt~chs~---------------------------------T~~l~~~~~~AD  205 (294)
T PRK14187        161 SDAVVIGRSNIVGKPMACLLLGE--NCTVTTVHSA---------------------------------TRDLADYCSKAD  205 (294)
T ss_pred             CEEEEECCCccchHHHHHHHhhC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence            47999995 67899999999988  8899987741                                 235566688999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK  126 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~  126 (480)
                      +||.+++.|--         .+           ..++++|++||+.
T Consensus       206 IvVsAvGkp~~---------i~-----------~~~ik~gaiVIDV  231 (294)
T PRK14187        206 ILVAAVGIPNF---------VK-----------YSWIKKGAIVIDV  231 (294)
T ss_pred             EEEEccCCcCc---------cC-----------HHHcCCCCEEEEe
Confidence            99999987631         11           2346789999863

>PLN02383 aspartate semialdehyde dehydrogenase

Probab=94.33  E-value=0.12  Score=52.56  Aligned_cols=70  Identities=19%  Similarity=0.283  Sum_probs=40.5

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALK-CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      +||+||| .|++|.-+...|++. .|..++..+.....      .|+ ++...+          ..+.+.....+++.++
T Consensus         8 ~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rs------aGk-~~~~~~----------~~~~v~~~~~~~~~~~   70 (344)
T PLN02383          8 PSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARS------AGK-KVTFEG----------RDYTVEELTEDSFDGV   70 (344)
T ss_pred             CeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCC------CCC-eeeecC----------ceeEEEeCCHHHHcCC
Confidence            6899999 599999999999885 13334544432211      111 111111          1123322112346899


Q ss_pred             cEEEEeccC
Q 011654           80 DIVFVSVNT   88 (480)
Q Consensus        80 DvVii~Vpt   88 (480)
                      |+||+|+|.
T Consensus        71 D~vf~a~p~   79 (344)
T PLN02383         71 DIALFSAGG   79 (344)
T ss_pred             CEEEECCCc
Confidence            999999875

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.32  E-value=0.11  Score=57.66  Aligned_cols=34  Identities=29%  Similarity=0.365  Sum_probs=31.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      .||+|||.|..|+..|..|++.  |++|++|++.+.
T Consensus       311 kkVaIIG~GpaGl~aA~~L~~~--G~~Vtv~e~~~~  344 (639)
T PRK12809        311 EKVAVIGAGPAGLGCADILARA--GVQVDVFDRHPE  344 (639)
T ss_pred             CEEEEECcCHHHHHHHHHHHHc--CCcEEEEeCCCC
Confidence            5799999999999999999998  999999998764

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=94.30  E-value=0.062  Score=61.87  Aligned_cols=34  Identities=21%  Similarity=0.267  Sum_probs=31.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      .||+|||.|.-|++.|..|++.  ||+|++||..+.
T Consensus       307 kkVaVIGsGPAGLsaA~~Lar~--G~~VtVfE~~~~  340 (944)
T PRK12779        307 PPIAVVGSGPSGLINAYLLAVE--GFPVTVFEAFHD  340 (944)
T ss_pred             CeEEEECCCHHHHHHHHHHHHC--CCeEEEEeeCCC
Confidence            5899999999999999999998  999999998653

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=94.29  E-value=0.15  Score=45.66  Aligned_cols=90  Identities=17%  Similarity=0.163  Sum_probs=57.4

Q ss_pred             CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCC-hHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVT-EDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      +++++|+|+|.          .|....-+..|+..|.+|.+=...-+ +.+..++                      .++
T Consensus         2 l~~k~IAViGy----------GsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~----------------------~Gf   49 (165)
T PF07991_consen    2 LKGKTIAVIGY----------GSQGHAHALNLRDSGVNVIVGLREGSASWEKAKA----------------------DGF   49 (165)
T ss_dssp             HCTSEEEEES-----------SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHH----------------------TT-
T ss_pred             cCCCEEEEECC----------ChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHH----------------------CCC
Confidence            47899999995          56788899999999999998776655 2222222                      233


Q ss_pred             eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEE
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIF  444 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~  444 (480)
                      +. .+..||++.||+|+++++-..-.++=-+++...|++...++
T Consensus        50 ~v-~~~~eAv~~aDvV~~L~PD~~q~~vy~~~I~p~l~~G~~L~   92 (165)
T PF07991_consen   50 EV-MSVAEAVKKADVVMLLLPDEVQPEVYEEEIAPNLKPGATLV   92 (165)
T ss_dssp             EC-CEHHHHHHC-SEEEE-S-HHHHHHHHHHHHHHHS-TT-EEE
T ss_pred             ee-ccHHHHHhhCCEEEEeCChHHHHHHHHHHHHhhCCCCCEEE
Confidence            33 47899999999999998654333333367888888765554

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.29  E-value=0.31  Score=48.09  Aligned_cols=78  Identities=14%  Similarity=0.131  Sum_probs=60.2

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHh----CCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLG----DKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSP  394 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~----~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (480)
                      +-++++++|.|+|=|-         .-..+|+..|.+    +++.|.+.+...                           
T Consensus       152 ~i~l~Gk~vvViGrS~---------iVG~Pla~lL~~~~~~~~AtVt~~hs~t---------------------------  195 (286)
T PRK14184        152 GLSPAGKKAVVVGRSN---------IVGKPLALMLGAPGKFANATVTVCHSRT---------------------------  195 (286)
T ss_pred             CCCCCCCEEEEECCCc---------cchHHHHHHHhCCcccCCCEEEEEeCCc---------------------------
Confidence            3467899999999643         467889999998    889998866421                           


Q ss_pred             CCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          395 PASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                               .++.+.++.||+||.++.++.|  +..+.+    ++.++|||.-
T Consensus       196 ---------~~l~~~~~~ADIVI~AvG~p~l--i~~~~v----k~GavVIDVG  233 (286)
T PRK14184        196 ---------PDLAEECREADFLFVAIGRPRF--VTADMV----KPGAVVVDVG  233 (286)
T ss_pred             ---------hhHHHHHHhCCEEEEecCCCCc--CCHHHc----CCCCEEEEee
Confidence                     2467788999999999999998  454444    4557999975

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.28  E-value=0.21  Score=48.95  Aligned_cols=70  Identities=20%  Similarity=0.398  Sum_probs=52.9

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|||- ..+|.|+|..|..+  |..|+.++..                                 |.++.+..++||
T Consensus       159 k~vvViGrS~~VGkPla~lL~~~--~AtVt~chs~---------------------------------T~~l~~~~~~AD  203 (278)
T PRK14172        159 KEVVVIGRSNIVGKPVAQLLLNE--NATVTICHSK---------------------------------TKNLKEVCKKAD  203 (278)
T ss_pred             CEEEEECCCccchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence            47999995 67899999999987  8899988741                                 235566678999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK  126 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~  126 (480)
                      +||.+++-|--         .+           ..++++|.+||+.
T Consensus       204 IvIsAvGkp~~---------i~-----------~~~ik~gavVIDv  229 (278)
T PRK14172        204 ILVVAIGRPKF---------ID-----------EEYVKEGAIVIDV  229 (278)
T ss_pred             EEEEcCCCcCc---------cC-----------HHHcCCCcEEEEe
Confidence            99999986521         11           2346789999864

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.26  E-value=0.21  Score=49.22  Aligned_cols=70  Identities=19%  Similarity=0.335  Sum_probs=52.2

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHH--cCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            2 VKICCIGA-GYVGGPTMAVIAL--KCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~--~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      .+|+|||- +.+|.|+|..|.+  +  +..|+.+...                                 |.++++.++.
T Consensus       159 k~vvViGrS~~VGkPla~lL~~~~~--~atVtvchs~---------------------------------T~~l~~~~k~  203 (284)
T PRK14193        159 AHVVVIGRGVTVGRPIGLLLTRRSE--NATVTLCHTG---------------------------------TRDLAAHTRR  203 (284)
T ss_pred             CEEEEECCCCcchHHHHHHHhhccC--CCEEEEeCCC---------------------------------CCCHHHHHHh
Confidence            47999994 7789999999987  5  6788887641                                 2356666889


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK  126 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~  126 (480)
                      ||+||.+++-|--         ..           ..++++|++||+.
T Consensus       204 ADIvV~AvGkp~~---------i~-----------~~~ik~GavVIDv  231 (284)
T PRK14193        204 ADIIVAAAGVAHL---------VT-----------ADMVKPGAAVLDV  231 (284)
T ss_pred             CCEEEEecCCcCc---------cC-----------HHHcCCCCEEEEc
Confidence            9999999986521         11           2457899999863

>PLN02662 cinnamyl-alcohol dehydrogenase family protein

Probab=94.24  E-value=0.24  Score=49.44  Aligned_cols=35  Identities=14%  Similarity=0.300  Sum_probs=31.1

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSR   38 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~   38 (480)
                      ++|.|.| +|++|..++..|.++  |++|++++++++.
T Consensus         5 ~~ilVtGatGfIG~~l~~~L~~~--g~~V~~~~r~~~~   40 (322)
T PLN02662          5 KVVCVTGASGYIASWLVKLLLQR--GYTVKATVRDPND   40 (322)
T ss_pred             CEEEEECChHHHHHHHHHHHHHC--CCEEEEEEcCCCc
Confidence            5799998 699999999999998  9999999987653

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=94.24  E-value=0.046  Score=54.86  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=29.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      .+|.|||+|..|+.+|..|+++  |++|+++++++.
T Consensus         2 ~dV~IvGaG~aGl~~A~~L~~~--G~~v~i~E~~~~   35 (356)
T PF01494_consen    2 YDVAIVGAGPAGLAAALALARA--GIDVTIIERRPD   35 (356)
T ss_dssp             EEEEEE--SHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHhc--ccccccchhccc
Confidence            4799999999999999999999  999999998653

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=94.22  E-value=0.41  Score=50.09  Aligned_cols=114  Identities=21%  Similarity=0.228  Sum_probs=74.3

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEECCCCChH-HHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDK-AKLSIYDPQVTED-QIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      .+.+++|+|+|..          ..+..+++.|...| .+|.+++...... .+...++.                   .
T Consensus       177 ~l~~~~VlViGaG----------~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~-------------------~  227 (417)
T TIGR01035       177 SLKGKKALLIGAG----------EMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGG-------------------E  227 (417)
T ss_pred             CccCCEEEEECCh----------HHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCC-------------------e
Confidence            4688999999973          47888999999999 7899999865432 22222210                   0


Q ss_pred             ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcC---CCCEEEEcCCC--CChHHHhhcCcEEEEe
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMR---KPAYIFDGRNI--LDVEKLREIGFIVYSI  465 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~---~~~~i~D~~~~--~~~~~~~~~g~~y~~i  465 (480)
                      .+ ..++..+++.++|+||.+|..++.- ++.+.+...+.   .|.+++|...-  ++++-..-.|..++.+
T Consensus       228 ~i-~~~~l~~~l~~aDvVi~aT~s~~~i-i~~e~l~~~~~~~~~~~~viDla~Prdid~~v~~l~~v~l~~v  297 (417)
T TIGR01035       228 AV-KFEDLEEYLAEADIVISSTGAPHPI-VSKEDVERALRERTRPLFIIDIAVPRDVDPAVARLEGVFLYDV  297 (417)
T ss_pred             Ee-eHHHHHHHHhhCCEEEECCCCCCce-EcHHHHHHHHhcCCCCeEEEEeCCCCCCChhhcCcCCeEEEEH
Confidence            11 1246778889999999999887753 45556655443   35699999742  3443222236665554

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.20  E-value=0.38  Score=47.58  Aligned_cols=78  Identities=14%  Similarity=0.172  Sum_probs=59.0

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhC----CCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGD----KAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSP  394 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~----g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (480)
                      +-++.+++|.|+|=|-         .-..+|+..|.++    ++.|.+..-..                           
T Consensus       152 ~i~l~GK~vvViGrS~---------iVGkPla~lL~~~~~~~~aTVtvchs~T---------------------------  195 (293)
T PRK14185        152 HIETSGKKCVVLGRSN---------IVGKPMAQLMMQKAYPGDCTVTVCHSRS---------------------------  195 (293)
T ss_pred             CCCCCCCEEEEECCCc---------cchHHHHHHHHcCCCCCCCEEEEecCCC---------------------------
Confidence            3467999999999643         5678899999988    68888754321                           


Q ss_pred             CCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          395 PASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                               .++.+.++.||+||.++..+.|  ++.+++    ++.++|||.-
T Consensus       196 ---------~nl~~~~~~ADIvIsAvGkp~~--i~~~~v----k~gavVIDvG  233 (293)
T PRK14185        196 ---------KNLKKECLEADIIIAALGQPEF--VKADMV----KEGAVVIDVG  233 (293)
T ss_pred             ---------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCCEEEEec
Confidence                     2456778999999999999998  454444    4457999975

>PLN02427 UDP-apiose/xylose synthase

Probab=94.16  E-value=0.057  Score=55.74  Aligned_cols=41  Identities=22%  Similarity=0.443  Sum_probs=34.4

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN   43 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~   43 (480)
                      |||.|.| .|++|..++..|.+++ |++|+++|++.++...+.
T Consensus        15 ~~VlVTGgtGfIGs~lv~~L~~~~-g~~V~~l~r~~~~~~~l~   56 (386)
T PLN02427         15 LTICMIGAGGFIGSHLCEKLMTET-PHKVLALDVYNDKIKHLL   56 (386)
T ss_pred             cEEEEECCcchHHHHHHHHHHhcC-CCEEEEEecCchhhhhhh
Confidence            7999998 5999999999999861 599999999877665544

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=94.15  E-value=0.18  Score=50.73  Aligned_cols=71  Identities=21%  Similarity=0.300  Sum_probs=53.0

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|.|||- ..+|.|+|..|.++  +..|+++...                                 |.++.+..++||
T Consensus       215 K~vvVIGRS~iVGkPla~LL~~~--~ATVTicHs~---------------------------------T~nl~~~~~~AD  259 (345)
T PLN02897        215 KNAVVIGRSNIVGLPMSLLLQRH--DATVSTVHAF---------------------------------TKDPEQITRKAD  259 (345)
T ss_pred             CEEEEECCCccccHHHHHHHHHC--CCEEEEEcCC---------------------------------CCCHHHHHhhCC
Confidence            47999995 67899999999987  8899887631                                 345566688999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +||.+++-|--         ..           ...+++|.+||+..
T Consensus       260 IvIsAvGkp~~---------v~-----------~d~vk~GavVIDVG  286 (345)
T PLN02897        260 IVIAAAGIPNL---------VR-----------GSWLKPGAVVIDVG  286 (345)
T ss_pred             EEEEccCCcCc---------cC-----------HHHcCCCCEEEEcc
Confidence            99999986531         11           24468899998643

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.14  E-value=0.34  Score=48.95  Aligned_cols=103  Identities=7%  Similarity=-0.016  Sum_probs=67.8

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      .+|+|+|.          .+....++..|.+.|.+|.+||+.....+..........+.+        ......++...+
T Consensus         5 m~I~iIG~----------G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~--------g~~~~~~~~~~~   66 (328)
T PRK14618          5 MRVAVLGA----------GAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLP--------GVALPAELYPTA   66 (328)
T ss_pred             CeEEEECc----------CHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCC--------CCcCCCCeEEeC
Confidence            48999998          568999999999999999999996433222221110000000        001112355667


Q ss_pred             CHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCC
Q 011654          405 DAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNIL  450 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~  450 (480)
                      ++.++++++|+|++++.....     ..+.+.+++..++++..+=+
T Consensus        67 ~~~e~~~~aD~Vi~~v~~~~~-----~~v~~~l~~~~~vi~~~~Gi  107 (328)
T PRK14618         67 DPEEALAGADFAVVAVPSKAL-----RETLAGLPRALGYVSCAKGL  107 (328)
T ss_pred             CHHHHHcCCCEEEEECchHHH-----HHHHHhcCcCCEEEEEeecc
Confidence            888889999999999988864     33445555556889988843

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.08  E-value=0.24  Score=48.88  Aligned_cols=70  Identities=24%  Similarity=0.415  Sum_probs=52.6

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|.|||- ..+|.|+|..|.++  +..|+.+...                                 |.++.+..++||
T Consensus       160 K~vvViGrS~iVGkPla~lL~~~--~ATVtichs~---------------------------------T~~L~~~~~~AD  204 (288)
T PRK14171        160 KNVVIIGRSNIVGKPLSALLLKE--NCSVTICHSK---------------------------------THNLSSITSKAD  204 (288)
T ss_pred             CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence            47999995 67899999999988  8899987631                                 235566678999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK  126 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~  126 (480)
                      +||.+++-|--         ..           ..++++|.+||+.
T Consensus       205 IvV~AvGkp~~---------i~-----------~~~vk~GavVIDv  230 (288)
T PRK14171        205 IVVAAIGSPLK---------LT-----------AEYFNPESIVIDV  230 (288)
T ss_pred             EEEEccCCCCc---------cC-----------HHHcCCCCEEEEe
Confidence            99999986521         11           2346889999864

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=94.07  E-value=0.88  Score=47.42  Aligned_cols=122  Identities=16%  Similarity=0.175  Sum_probs=78.4

Q ss_pred             HHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCC
Q 011654          312 NRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQP  391 (480)
Q Consensus       312 ~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (480)
                      +-+.+..+..+.+++|+|+|...          -.+.++..++..|++|.++|+..........++              
T Consensus       190 ~~i~r~t~~~l~GktVvViG~G~----------IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G--------------  245 (413)
T cd00401         190 DGIKRATDVMIAGKVAVVAGYGD----------VGKGCAQSLRGQGARVIVTEVDPICALQAAMEG--------------  245 (413)
T ss_pred             HHHHHhcCCCCCCCEEEEECCCH----------HHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC--------------
Confidence            33444444456899999999754          678899999999999999987543322222221              


Q ss_pred             CCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC---CCChHHHhhcCcEEEEecCC
Q 011654          392 MSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN---ILDVEKLREIGFIVYSIGKP  468 (480)
Q Consensus       392 ~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~---~~~~~~~~~~g~~y~~iG~~  468 (480)
                              ... .+.+++++++|+++.+|..+..  ++ +...+.|++.++++..-.   -++...+........+.-..
T Consensus       246 --------~~~-~~~~e~v~~aDVVI~atG~~~~--i~-~~~l~~mk~GgilvnvG~~~~eId~~~L~~~el~i~g~~~~  313 (413)
T cd00401         246 --------YEV-MTMEEAVKEGDIFVTTTGNKDI--IT-GEHFEQMKDGAIVCNIGHFDVEIDVKGLKENAVEVVNIKPQ  313 (413)
T ss_pred             --------CEE-ccHHHHHcCCCEEEECCCCHHH--HH-HHHHhcCCCCcEEEEeCCCCCccCHHHHHhhccEEEEccCC
Confidence                    222 2456788999999999987652  22 344567887777766543   24445555555666655444


Q ss_pred             C
Q 011654          469 L  469 (480)
Q Consensus       469 ~  469 (480)
                      .
T Consensus       314 ~  314 (413)
T cd00401         314 V  314 (413)
T ss_pred             c
Confidence            3

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.06  E-value=0.22  Score=52.24  Aligned_cols=109  Identities=9%  Similarity=0.063  Sum_probs=67.8

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCC--CCCCCCCCCCce
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIH--LQPMSPPASKQV  400 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  400 (480)
                      ..-+|+|+|+.|          ..+.++..|.+ |.+|.+||..-...+... -+      ..|+.  .++... ....+
T Consensus         5 ~~mkI~vIGlGy----------vGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G------~~~~~e~~~~~l~-~~g~l   65 (425)
T PRK15182          5 DEVKIAIIGLGY----------VGLPLAVEFGK-SRQVVGFDVNKKRILELK-NG------VDVNLETTEEELR-EARYL   65 (425)
T ss_pred             CCCeEEEECcCc----------chHHHHHHHhc-CCEEEEEeCCHHHHHHHH-Cc------CCCCCCCCHHHHH-hhCCe
Confidence            346899999999          78999999776 799999999765433322 01      11110  000000 01223


Q ss_pred             eeecCHHHhcccccEEEEEecccc--cccccH-------HHHHHhcCCCCEEEEcCCCCC
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDE--FKTLDY-------QKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~--~~~~~~-------~~~~~~~~~~~~i~D~~~~~~  451 (480)
                      ...++ .++++++|+++++++-|.  ....|.       +.+...+++..+|||..-+.+
T Consensus        66 ~~t~~-~~~~~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~p  124 (425)
T PRK15182         66 KFTSE-IEKIKECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYP  124 (425)
T ss_pred             eEEeC-HHHHcCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCC
Confidence            44444 457899999999988762  112333       345566676779999877765

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.06  E-value=0.2  Score=50.41  Aligned_cols=118  Identities=13%  Similarity=0.057  Sum_probs=71.0

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHh-hhccccCCCCCCCCCCCCCCCCCceee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRD-LSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      -++|+|+|..          .....++..|...|++|.+||+.....+.... +.   ..|+.-............++++
T Consensus         7 i~~VaVIGaG----------~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~i~~   73 (321)
T PRK07066          7 IKTFAAIGSG----------VIGSGWVARALAHGLDVVAWDPAPGAEAALRANVA---NAWPALERQGLAPGASPARLRF   73 (321)
T ss_pred             CCEEEEECcC----------HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH---HHHHHHHHcCCChhhHHhhcee
Confidence            4789999974          48899999999999999999997543221110 00   0000000000000112346778


Q ss_pred             ecCHHHhcccccEEEEEecc-cccccccHHHHHHhcCCCCEEEEcCC-CCChHHH
Q 011654          403 VWDAYQAAKDAHGVCILTEW-DEFKTLDYQKIFDNMRKPAYIFDGRN-ILDVEKL  455 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h-~~~~~~~~~~~~~~~~~~~~i~D~~~-~~~~~~~  455 (480)
                      .+++++++++||.|+-++.= .+.|.--++++.+.+++. .||+..- -+....+
T Consensus        74 ~~~l~~av~~aDlViEavpE~l~vK~~lf~~l~~~~~~~-aIlaSnTS~l~~s~l  127 (321)
T PRK07066         74 VATIEACVADADFIQESAPEREALKLELHERISRAAKPD-AIIASSTSGLLPTDF  127 (321)
T ss_pred             cCCHHHHhcCCCEEEECCcCCHHHHHHHHHHHHHhCCCC-eEEEECCCccCHHHH
Confidence            88999999999999987653 334444446677776665 5676533 3343333

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=94.05  E-value=0.25  Score=48.56  Aligned_cols=79  Identities=14%  Similarity=0.165  Sum_probs=59.8

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+-++++++|.|+|-+.         .-..+|+..|..+|+.|.+.+-..                              
T Consensus       146 ~~i~l~Gk~V~ViGrs~---------~vGrpla~lL~~~~atVtv~hs~t------------------------------  186 (279)
T PRK14178        146 YKISIAGKRAVVVGRSI---------DVGRPMAALLLNADATVTICHSKT------------------------------  186 (279)
T ss_pred             cCCCCCCCEEEEECCCc---------cccHHHHHHHHhCCCeeEEEecCh------------------------------
Confidence            34468999999999753         345778888889999999876421                              


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            .++.+.+++||.||.++..+.|  ++.+.+    ++.++|||.-
T Consensus       187 ------~~L~~~~~~ADIvI~Avgk~~l--v~~~~v----k~GavVIDVg  224 (279)
T PRK14178        187 ------ENLKAELRQADILVSAAGKAGF--ITPDMV----KPGATVIDVG  224 (279)
T ss_pred             ------hHHHHHHhhCCEEEECCCcccc--cCHHHc----CCCcEEEEee
Confidence                  2467788999999999998876  444444    5667999976

>PRK07588 hypothetical protein; Provisional

Probab=94.00  E-value=0.057  Score=55.79  Aligned_cols=34  Identities=18%  Similarity=0.203  Sum_probs=31.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      |+|.|||.|..|+++|..|+++  |++|+++++.++
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~--G~~v~v~E~~~~   34 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRY--GHEPTLIERAPE   34 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHC--CCceEEEeCCCC
Confidence            6899999999999999999998  999999998754

>PRK07538 hypothetical protein; Provisional

Probab=94.00  E-value=0.057  Score=56.30  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=31.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      |+|.|||+|..|+++|..|+++  |++|+++++.++
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~   34 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQR--GIEVVVFEAAPE   34 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCcEEEEEcCCc
Confidence            7999999999999999999998  999999999764

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=93.99  E-value=0.073  Score=55.11  Aligned_cols=35  Identities=26%  Similarity=0.387  Sum_probs=31.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      ..|.|||.|.+|+++|..|++..+|++|+++|+.+
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~   37 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES   37 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            47999999999999999999866689999999864

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.98  E-value=0.27  Score=51.20  Aligned_cols=31  Identities=23%  Similarity=0.189  Sum_probs=28.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      |+|.|+|+|.-|.++|..|. +  |++|+++|.+
T Consensus         1 ~~v~v~G~G~sG~a~a~~L~-~--G~~V~~~D~~   31 (401)
T PRK03815          1 MKISLFGYGKTTKALAKFLK-K--FGGVDIFDDK   31 (401)
T ss_pred             CeEEEEeECHHHHHHHHHHh-C--CCeEEEEcCC
Confidence            78999999999999999999 8  9999999954

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.98  E-value=0.23  Score=48.77  Aligned_cols=70  Identities=16%  Similarity=0.327  Sum_probs=52.2

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|||- ..+|.|+|..|.++  +..|+.+...                                 |.++++..+.||
T Consensus       158 k~vvViGrS~iVGkPla~lL~~~--~AtVtichs~---------------------------------T~nl~~~~~~AD  202 (282)
T PRK14182        158 KRALVVGRSNIVGKPMAMMLLER--HATVTIAHSR---------------------------------TADLAGEVGRAD  202 (282)
T ss_pred             CEEEEECCCCcchHHHHHHHHHC--CCEEEEeCCC---------------------------------CCCHHHHHhhCC
Confidence            47999995 67899999999987  7899987531                                 235566678999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK  126 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~  126 (480)
                      +||.+++-|.-         ..           ..++++|++||+.
T Consensus       203 IvI~AvGk~~~---------i~-----------~~~ik~gaiVIDv  228 (282)
T PRK14182        203 ILVAAIGKAEL---------VK-----------GAWVKEGAVVIDV  228 (282)
T ss_pred             EEEEecCCcCc---------cC-----------HHHcCCCCEEEEe
Confidence            99999986521         11           2346789999864

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=93.97  E-value=0.2  Score=55.59  Aligned_cols=34  Identities=29%  Similarity=0.365  Sum_probs=31.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      ++|+|||.|..|++.|..|++.  |++|+++|..+.
T Consensus       328 ~~VaIIGaGpAGLsaA~~L~~~--G~~V~V~E~~~~  361 (654)
T PRK12769        328 KRVAIIGAGPAGLACADVLARN--GVAVTVYDRHPE  361 (654)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCCC
Confidence            4899999999999999999998  999999998643

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=93.96  E-value=1.9  Score=40.09  Aligned_cols=115  Identities=14%  Similarity=0.104  Sum_probs=61.9

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-ecCHHHHh----c
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-STDIEKHV----A   77 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t~d~~~a~----~   77 (480)
                      +|.-+|+|.-..++..... ..++.+|+++|++++.++..++.....   ++        ..++.+ ..|..+.+    .
T Consensus        43 ~vlDlG~GtG~~s~~~a~~-~~~~~~v~avD~~~~~~~~a~~n~~~~---g~--------~~~v~~~~~d~~~~l~~~~~  110 (198)
T PRK00377         43 MILDIGCGTGSVTVEASLL-VGETGKVYAVDKDEKAINLTRRNAEKF---GV--------LNNIVLIKGEAPEILFTINE  110 (198)
T ss_pred             EEEEeCCcCCHHHHHHHHH-hCCCCEEEEEECCHHHHHHHHHHHHHh---CC--------CCCeEEEEechhhhHhhcCC
Confidence            5788898772222222111 112468999999999888665321000   00        012222 22332221    4


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~  145 (480)
                      ..|.||+.....            +   +..+++.+...++++..++. .+....+.+++.+.+++.+
T Consensus       111 ~~D~V~~~~~~~------------~---~~~~l~~~~~~LkpgG~lv~-~~~~~~~~~~~~~~l~~~g  162 (198)
T PRK00377        111 KFDRIFIGGGSE------------K---LKEIISASWEIIKKGGRIVI-DAILLETVNNALSALENIG  162 (198)
T ss_pred             CCCEEEECCCcc------------c---HHHHHHHHHHHcCCCcEEEE-EeecHHHHHHHHHHHHHcC
Confidence            589999864321            1   35667777788888665554 3334455566666666543

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.94  E-value=0.46  Score=47.10  Aligned_cols=79  Identities=14%  Similarity=0.122  Sum_probs=59.2

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhC----CCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGD----KAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMS  393 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~----g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (480)
                      ++-++++++|.|+|=|-         .-..+|+..|.++    ++.|.+..-..                          
T Consensus       151 ~~i~l~Gk~vvViGrS~---------iVGkPla~lL~~~~~~~~aTVtvchs~T--------------------------  195 (297)
T PRK14167        151 AGVDTEGADVVVVGRSD---------IVGKPMANLLIQKADGGNATVTVCHSRT--------------------------  195 (297)
T ss_pred             hCCCCCCCEEEEECCCc---------ccHHHHHHHHhcCccCCCCEEEEeCCCC--------------------------
Confidence            33467999999999543         4567899999888    89999854321                          


Q ss_pred             CCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          394 PPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       394 ~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                                .++.+.++.||+||.++..+.|  ++.+.+    ++.++|||.-
T Consensus       196 ----------~~l~~~~~~ADIvIsAvGkp~~--i~~~~i----k~gaiVIDvG  233 (297)
T PRK14167        196 ----------DDLAAKTRRADIVVAAAGVPEL--IDGSML----SEGATVIDVG  233 (297)
T ss_pred             ----------CCHHHHHhhCCEEEEccCCcCc--cCHHHc----CCCCEEEEcc
Confidence                      2456778999999999999997  444444    4457999975

>PRK06545 prephenate dehydrogenase; Validated

Probab=93.93  E-value=0.28  Score=50.24  Aligned_cols=97  Identities=15%  Similarity=0.228  Sum_probs=66.4

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      ++|+|+|+.-          ..-.++..|.++|.+|.+||+...........+   ..             ...  ...+
T Consensus         1 ~~I~iIG~Gl----------iG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~---~~-------------~~~--~~~~   52 (359)
T PRK06545          1 RTVLIVGLGL----------IGGSLALAIKAAGPDVFIIGYDPSAAQLARALG---FG-------------VID--ELAA   52 (359)
T ss_pred             CeEEEEEeCH----------HHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhc---CC-------------CCc--cccc
Confidence            4799999854          788899999999998888887665544332211   00             000  1235


Q ss_pred             CHHHhcccccEEEEEecccccccccHHHHHH-hcCCCCEEEEcCCCC
Q 011654          405 DAYQAAKDAHGVCILTEWDEFKTLDYQKIFD-NMRKPAYIFDGRNIL  450 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~-~~~~~~~i~D~~~~~  450 (480)
                      +..++++++|+||++++-+...++ .+++.. .+++..+|.|.-++=
T Consensus        53 ~~~~~~~~aDlVilavP~~~~~~v-l~~l~~~~l~~~~ivtDv~SvK   98 (359)
T PRK06545         53 DLQRAAAEADLIVLAVPVDATAAL-LAELADLELKPGVIVTDVGSVK   98 (359)
T ss_pred             CHHHHhcCCCEEEEeCCHHHHHHH-HHHHhhcCCCCCcEEEeCcccc
Confidence            678889999999999998876542 245654 255567888987764

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=93.93  E-value=0.39  Score=45.83  Aligned_cols=100  Identities=23%  Similarity=0.263  Sum_probs=58.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh---cc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV---AE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~---~~   78 (480)
                      ++|.=||||  |..++..+|+.  |.+|++.|.+++-++..+..-.   |.++.        .+.. +.+.++..   ..
T Consensus        61 ~~vLDvGCG--gG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~---e~gv~--------i~y~-~~~~edl~~~~~~  124 (243)
T COG2227          61 LRVLDVGCG--GGILSEPLARL--GASVTGIDASEKPIEVAKLHAL---ESGVN--------IDYR-QATVEDLASAGGQ  124 (243)
T ss_pred             CeEEEecCC--ccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhh---hcccc--------ccch-hhhHHHHHhcCCC
Confidence            356667887  55889999998  9999999999998776553100   01110        0000 11122222   35


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVP  130 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~  130 (480)
                      .|+|+.+ ----+        .+|.   ++.++...+.++|+.+++. ||+-
T Consensus       125 FDvV~cm-EVlEH--------v~dp---~~~~~~c~~lvkP~G~lf~-STin  163 (243)
T COG2227         125 FDVVTCM-EVLEH--------VPDP---ESFLRACAKLVKPGGILFL-STIN  163 (243)
T ss_pred             ccEEEEh-hHHHc--------cCCH---HHHHHHHHHHcCCCcEEEE-eccc
Confidence            6766544 11111        3443   4567778888999887765 6764

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=93.92  E-value=0.1  Score=39.82  Aligned_cols=29  Identities=28%  Similarity=0.269  Sum_probs=26.2

Q ss_pred             EEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            6 CIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         6 VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      |||.|.-|+..|..|+++  |++|++++++.
T Consensus         1 IiGaG~sGl~aA~~L~~~--g~~v~v~E~~~   29 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA--GYRVTVFEKND   29 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT--TSEEEEEESSS
T ss_pred             CEeeCHHHHHHHHHHHHC--CCcEEEEecCc
Confidence            899999999999999998  99999999864

...

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=93.92  E-value=0.15  Score=50.02  Aligned_cols=70  Identities=16%  Similarity=0.207  Sum_probs=56.7

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      ...+|+.+||.-          +.-.++..|.+.|++|.+||-..+...-+.+                      .+.++
T Consensus        34 s~~~iGFIGLG~----------MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~----------------------~Ga~v   81 (327)
T KOG0409|consen   34 SKTRIGFIGLGN----------MGSAMVSNLIKAGYKVTVYDRTKDKCKEFQE----------------------AGARV   81 (327)
T ss_pred             ccceeeEEeecc----------chHHHHHHHHHcCCEEEEEeCcHHHHHHHHH----------------------hchhh
Confidence            578999999965          7789999999999999999976655433332                      23467


Q ss_pred             ecCHHHhcccccEEEEEecccc
Q 011654          403 VWDAYQAAKDAHGVCILTEWDE  424 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~  424 (480)
                      .+++.|..+.+|+++.++..+.
T Consensus        82 ~~sPaeVae~sDvvitmv~~~~  103 (327)
T KOG0409|consen   82 ANSPAEVAEDSDVVITMVPNPK  103 (327)
T ss_pred             hCCHHHHHhhcCEEEEEcCChH
Confidence            8899999999999999988764

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=93.90  E-value=0.1  Score=55.05  Aligned_cols=87  Identities=18%  Similarity=0.174  Sum_probs=56.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCC-C-hHHHHHhhcCCCEEE--------ecC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEP-G-LEDVVTQCRGRNLFF--------STD   71 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~-~-l~~l~~~~~~~~l~~--------t~d   71 (480)
                      .+|+|||.|.-|+..|..|++.  ||.|+++++.+.-.-.+.-|...+..+ . ++..+..+...++++        .-+
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~--G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it  201 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRA--GHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDIT  201 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhC--CCeEEEeCCcCCCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCC
Confidence            4899999999999999999998  999999998765444444443322221 1 111111111112332        224


Q ss_pred             HHHHhccCcEEEEeccCCC
Q 011654           72 IEKHVAEADIVFVSVNTPT   90 (480)
Q Consensus        72 ~~~a~~~aDvVii~Vptp~   90 (480)
                      .++..++.|.|++|+.+..
T Consensus       202 ~~~L~~e~Dav~l~~G~~~  220 (457)
T COG0493         202 LEELLKEYDAVFLATGAGK  220 (457)
T ss_pred             HHHHHHhhCEEEEeccccC
Confidence            5666678899999998753

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=93.90  E-value=0.21  Score=53.07  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=30.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .+|.|||.|..|+..|..|++.  |++|+++|..+
T Consensus       142 ~~V~IIG~GpaGl~aA~~l~~~--G~~V~i~e~~~  174 (467)
T TIGR01318       142 KRVAVIGAGPAGLACADILARA--GVQVVVFDRHP  174 (467)
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCeEEEEecCC
Confidence            4799999999999999999998  99999999875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PTZ00245 ubiquitin activating enzyme; Provisional

Probab=93.88  E-value=0.69  Score=44.62  Aligned_cols=114  Identities=15%  Similarity=0.055  Sum_probs=68.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHH------HHhhcCCCEEEecC--H
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDV------VTQCRGRNLFFSTD--I   72 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l------~~~~~~~~l~~t~d--~   72 (480)
                      .+|.|||+|-+|.++|.+|+..  |. +++++|-+.-....+++....-.+.|-...      +.++ +..+++..-  .
T Consensus        27 SrVLVVG~GGLGsEVAKnLaLA--GVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAeaAa~~L~eL-NP~V~V~~i~~r  103 (287)
T PTZ00245         27 TSVALHGVAGAAAEAAKNLVLA--GVRAVAVADEGLVTDADVCTNYLMQGEAGGTRGARALGALQRL-NPHVSVYDAVTK  103 (287)
T ss_pred             CeEEEECCCchHHHHHHHHHHc--CCCeEEEecCCccchhhhccccccccccCCcHHHHHHHHHHHH-CCCcEEEEcccc
Confidence            3799999999999999999998  65 699999876555555543211111121111      1111 122322211  1


Q ss_pred             HHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           73 EKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      -+.....++++++..+                 ++++++.+...++.-.+++..+|..+-|..
T Consensus       104 ld~~n~fqvvV~~~~~-----------------le~av~~~~~~~~~~d~~~l~~~~g~~~~~  149 (287)
T PTZ00245        104 LDGSSGTRVTMAAVIT-----------------EEDAVPHVQAALPCADIVALHVTCGPTVLA  149 (287)
T ss_pred             cCCcCCceEEEEEccc-----------------HHHHHHHhccCCCcccEEEEEEecchhhhh
Confidence            1113466777777542                 356677777767767788888888766644

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=93.87  E-value=0.36  Score=47.71  Aligned_cols=78  Identities=15%  Similarity=0.151  Sum_probs=58.3

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +-.+++++|.|+|-+-         .-+.+++..|.++|++|.+++...                               
T Consensus       154 ~i~l~Gk~vvViG~gg---------~vGkpia~~L~~~gatVtv~~~~t-------------------------------  193 (283)
T PRK14192        154 NIELAGKHAVVVGRSA---------ILGKPMAMMLLNANATVTICHSRT-------------------------------  193 (283)
T ss_pred             CCCCCCCEEEEECCcH---------HHHHHHHHHHHhCCCEEEEEeCCc-------------------------------
Confidence            3457899999999531         257889999999999999887521                               


Q ss_pred             ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                           .++.+.+++||.||.+|..+.+  ++.+.    +++..+|+|.-
T Consensus       194 -----~~L~~~~~~aDIvI~AtG~~~~--v~~~~----lk~gavViDvg  231 (283)
T PRK14192        194 -----QNLPELVKQADIIVGAVGKPEL--IKKDW----IKQGAVVVDAG  231 (283)
T ss_pred             -----hhHHHHhccCCEEEEccCCCCc--CCHHH----cCCCCEEEEEE
Confidence                 1345667999999999998875  45444    35567999974

>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)

Probab=93.86  E-value=0.11  Score=52.94  Aligned_cols=66  Identities=17%  Similarity=0.283  Sum_probs=39.9

Q ss_pred             EEEEEc-CChhHHHHHHHHHHcCCCCeE---EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec-CHHHHhc
Q 011654            3 KICCIG-AGYVGGPTMAVIALKCPKIEV---AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST-DIEKHVA   77 (480)
Q Consensus         3 kI~VIG-lG~~G~~lA~~La~~~~G~~V---~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~-d~~~a~~   77 (480)
                      ||+||| .|++|.-+...|+++  +|.+   ..+..+.+.-+.+.       ..+          ..+.+.+ +. +.+.
T Consensus         1 ~VaIvGAtG~vG~eLi~lL~~~--~hp~~~l~~~as~~~~g~~~~-------~~~----------~~~~~~~~~~-~~~~   60 (339)
T TIGR01296         1 NVAIVGATGAVGQEMLKILEER--NFPIDKLVLLASDRSAGRKVT-------FKG----------KELEVNEAKI-ESFE   60 (339)
T ss_pred             CEEEEcCCCHHHHHHHHHHHhC--CCChhhEEEEeccccCCCeee-------eCC----------eeEEEEeCCh-HHhc
Confidence            689999 699999999999886  5653   34444322111111       001          1122221 22 3468


Q ss_pred             cCcEEEEeccC
Q 011654           78 EADIVFVSVNT   88 (480)
Q Consensus        78 ~aDvVii~Vpt   88 (480)
                      ++|++|+|+|.
T Consensus        61 ~~D~v~~a~g~   71 (339)
T TIGR01296        61 GIDIALFSAGG   71 (339)
T ss_pred             CCCEEEECCCH
Confidence            99999999874

Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.

>PRK08163 salicylate hydroxylase; Provisional

Probab=93.81  E-value=0.066  Score=55.30  Aligned_cols=34  Identities=18%  Similarity=0.309  Sum_probs=31.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      ++|.|||.|..|+.+|..|++.  |++|+++++.++
T Consensus         5 ~~V~IvGaGiaGl~~A~~L~~~--g~~v~v~Er~~~   38 (396)
T PRK08163          5 TPVLIVGGGIGGLAAALALARQ--GIKVKLLEQAAE   38 (396)
T ss_pred             CeEEEECCcHHHHHHHHHHHhC--CCcEEEEeeCcc
Confidence            4799999999999999999998  999999998764

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=93.77  E-value=0.092  Score=52.69  Aligned_cols=31  Identities=26%  Similarity=0.353  Sum_probs=29.4

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      .|.|||.|..|+++|..|++.  |++|+++|.+
T Consensus         1 DvvIIGaGi~G~~~A~~La~~--G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARR--GHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHT--TSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCeEEEEeec
Confidence            589999999999999999998  9999999986

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=93.76  E-value=0.066  Score=55.83  Aligned_cols=34  Identities=15%  Similarity=0.347  Sum_probs=31.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~   37 (480)
                      |||.|||.|.-|+++|..|+++  | ++|+++++.++
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~--g~~~v~v~Er~~~   35 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKH--SHLNVQLFEAAPA   35 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhc--CCCCEEEEecCCc
Confidence            7999999999999999999997  7 49999999764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=93.76  E-value=0.39  Score=51.45  Aligned_cols=114  Identities=13%  Similarity=0.070  Sum_probs=68.2

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhh-h---ccccCCCC-CCCCCCCCCCCCC
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDL-S---MKKFDWDH-PIHLQPMSPPASK  398 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~-~---~~~~~~~~-~~~~~~~~~~~~~  398 (480)
                      -++|+|+|...          ....++..|.++|.+|.+||+.....+..... .   ....++.. +.       ....
T Consensus         4 i~kIavIG~G~----------MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~g   66 (495)
T PRK07531          4 IMKAACIGGGV----------IGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPL-------PPEG   66 (495)
T ss_pred             cCEEEEECcCH----------HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchh-------hhhh
Confidence            35899999854          88999999999999999999965443211100 0   00000000 00       0112


Q ss_pred             ceeeecCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCC-CCChHHH
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRN-ILDVEKL  455 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~-~~~~~~~  455 (480)
                      ++.+++++.+++++||+|+..+.-+. .+.--++++...+++. .||+..- -++...+
T Consensus        67 ~i~~~~~~~ea~~~aD~Vieavpe~~~vk~~l~~~l~~~~~~~-~iI~SsTsgi~~s~l  124 (495)
T PRK07531         67 RLTFCASLAEAVAGADWIQESVPERLDLKRRVLAEIDAAARPD-ALIGSSTSGFLPSDL  124 (495)
T ss_pred             ceEeeCCHHHHhcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCC-cEEEEcCCCCCHHHH
Confidence            36788899999999999999876653 3332234555554544 5666533 3344444

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=93.74  E-value=0.18  Score=55.02  Aligned_cols=33  Identities=15%  Similarity=0.210  Sum_probs=29.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .+|+|||.|..|+..|..|++.  |++|+++|..+
T Consensus       138 ~~V~VIGaGpaGL~aA~~l~~~--G~~V~v~e~~~  170 (564)
T PRK12771        138 KRVAVIGGGPAGLSAAYHLRRM--GHAVTIFEAGP  170 (564)
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCeEEEEecCC
Confidence            4799999999999999999998  99999999653

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=93.73  E-value=0.39  Score=47.21  Aligned_cols=101  Identities=13%  Similarity=0.184  Sum_probs=69.9

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC----EEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA----KLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~----~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+|+|+|+.-          .+..+++.|.+.|.    +|.+||+....-+...+                     ..++
T Consensus         3 ~~IgfIG~G~----------MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~---------------------~~g~   51 (272)
T PRK12491          3 KQIGFIGCGN----------MGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASD---------------------KYGI   51 (272)
T ss_pred             CeEEEECccH----------HHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHH---------------------hcCc
Confidence            4799999854          88999999998874    69999985433221111                     0124


Q ss_pred             eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhh
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLRE  457 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~  457 (480)
                      ...++..+.++++|+|++++.-..+.++- +.+....++..+|||.-.=++-+.+++
T Consensus        52 ~~~~~~~e~~~~aDiIiLavkP~~~~~vl-~~l~~~~~~~~lvISi~AGi~i~~l~~  107 (272)
T PRK12491         52 TITTNNNEVANSADILILSIKPDLYSSVI-NQIKDQIKNDVIVVTIAAGKSIKSTEN  107 (272)
T ss_pred             EEeCCcHHHHhhCCEEEEEeChHHHHHHH-HHHHHhhcCCcEEEEeCCCCcHHHHHH
Confidence            45667788889999999999865555422 445544444469999988777776665

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=93.72  E-value=0.57  Score=46.93  Aligned_cols=74  Identities=20%  Similarity=0.302  Sum_probs=54.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCC--CCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCP--KIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~--G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-   77 (480)
                      -++||+|+|.|+.-.+..|... |  +|+|+ +.|++.++...+.+...-               .+.++..++++.++ 
T Consensus         7 ir~Gi~g~g~ia~~f~~al~~~-p~s~~~Ivava~~s~~~A~~fAq~~~~---------------~~~k~y~syEeLakd   70 (351)
T KOG2741|consen    7 IRWGIVGAGRIARDFVRALHTL-PESNHQIVAVADPSLERAKEFAQRHNI---------------PNPKAYGSYEELAKD   70 (351)
T ss_pred             eEEEEeehhHHHHHHHHHhccC-cccCcEEEEEecccHHHHHHHHHhcCC---------------CCCccccCHHHHhcC
Confidence            3799999999999999888643 3  67765 578988887777654211               12456677888665 


Q ss_pred             -cCcEEEEeccCCCC
Q 011654           78 -EADIVFVSVNTPTK   91 (480)
Q Consensus        78 -~aDvVii~Vptp~~   91 (480)
                       ++|+|.|+.|+|.+
T Consensus        71 ~~vDvVyi~~~~~qH   85 (351)
T KOG2741|consen   71 PEVDVVYISTPNPQH   85 (351)
T ss_pred             CCcCEEEeCCCCccH
Confidence             45999999998865

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.70  E-value=0.56  Score=48.73  Aligned_cols=92  Identities=15%  Similarity=0.173  Sum_probs=63.1

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|...          -...++..|...|++|.++|...........                      .+.
T Consensus       192 ~l~Gk~VvViG~G~----------IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----------------------~G~  239 (406)
T TIGR00936       192 LIAGKTVVVAGYGW----------CGKGIAMRARGMGARVIVTEVDPIRALEAAM----------------------DGF  239 (406)
T ss_pred             CCCcCEEEEECCCH----------HHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----------------------cCC
Confidence            46899999999866          6788999999999999999543222111111                      112


Q ss_pred             eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN  448 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~  448 (480)
                      .+ .+.+++++++|++|..|..+..  ++ ......|++.++++..-.
T Consensus       240 ~v-~~leeal~~aDVVItaTG~~~v--I~-~~~~~~mK~GailiN~G~  283 (406)
T TIGR00936       240 RV-MTMEEAAKIGDIFITATGNKDV--IR-GEHFENMKDGAIVANIGH  283 (406)
T ss_pred             Ee-CCHHHHHhcCCEEEECCCCHHH--HH-HHHHhcCCCCcEEEEECC
Confidence            22 2567889999999999886552  22 235578888777776544

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=93.68  E-value=0.5  Score=46.92  Aligned_cols=39  Identities=23%  Similarity=0.287  Sum_probs=32.5

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCH---HHHHHHH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIE-VAVVDISV---SRIAAWN   43 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~---~~v~~l~   43 (480)
                      ++.|+|+|-+|.+++..|+..  |.. |++++|++   ++.+.+.
T Consensus       128 ~vlI~GAGGagrAia~~La~~--G~~~V~I~~R~~~~~~~a~~l~  170 (289)
T PRK12548        128 KLTVIGAGGAATAIQVQCALD--GAKEITIFNIKDDFYERAEQTA  170 (289)
T ss_pred             EEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCchHHHHHHHHH
Confidence            688999999999999999988  775 99999996   5555544

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=93.66  E-value=0.083  Score=54.18  Aligned_cols=33  Identities=24%  Similarity=0.397  Sum_probs=30.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      ++|+|||.|.+|++.|..|++.  |++|+++|..+
T Consensus         5 ~~vvVIGgGi~Gls~A~~La~~--G~~V~vie~~~   37 (387)
T COG0665           5 MDVVIIGGGIVGLSAAYYLAER--GADVTVLEAGE   37 (387)
T ss_pred             ceEEEECCcHHHHHHHHHHHHc--CCEEEEEecCc
Confidence            6899999999999999999998  89999999765

>PRK07236 hypothetical protein; Provisional

Probab=93.65  E-value=0.075  Score=54.86  Aligned_cols=34  Identities=18%  Similarity=0.153  Sum_probs=31.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      ++|.|||.|..|+.+|..|+++  |++|+++++.+.
T Consensus         7 ~~ViIVGaG~aGl~~A~~L~~~--G~~v~v~E~~~~   40 (386)
T PRK07236          7 PRAVVIGGSLGGLFAALLLRRA--GWDVDVFERSPT   40 (386)
T ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCCEEEEecCCC
Confidence            5899999999999999999998  999999998753

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=93.64  E-value=0.27  Score=50.02  Aligned_cols=85  Identities=14%  Similarity=0.177  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhCCCEEEEECCCCChH--HHHHhhhccccCCCCCCCCCCCCCCCCCceeeecCHHHhcccccEEEEEeccc
Q 011654          346 AIDVCKGLLGDKAKLSIYDPQVTED--QIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWD  423 (480)
Q Consensus       346 ~~~l~~~L~~~g~~V~~~DP~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~  423 (480)
                      ...++..|.++|.+|.+||+.-..-  .....+.                   ..++....+..++++++|+|+++++.+
T Consensus        32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~-------------------~~Gi~~asd~~eaa~~ADvVIlaVP~~   92 (342)
T PRK12557         32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVE-------------------DAGVKVVSDDAEAAKHGEIHILFTPFG   92 (342)
T ss_pred             HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHH-------------------HCCCEEeCCHHHHHhCCCEEEEECCCc
Confidence            4788899999999999999965411  0111111                   134566778889999999999999977


Q ss_pred             c-cccccHHHHHHhcCCCCEEEEcCCCC
Q 011654          424 E-FKTLDYQKIFDNMRKPAYIFDGRNIL  450 (480)
Q Consensus       424 ~-~~~~~~~~~~~~~~~~~~i~D~~~~~  450 (480)
                      . .+++ .+.+...+++..+|+|+..+-
T Consensus        93 ~~v~~V-l~~L~~~L~~g~IVId~ST~~  119 (342)
T PRK12557         93 KKTVEI-AKNILPHLPENAVICNTCTVS  119 (342)
T ss_pred             HHHHHH-HHHHHhhCCCCCEEEEecCCC
Confidence            6 4442 246777777677899987654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	480
3tdk_A	487	Crystal Structure Of Human Udp-Glucose Dehydrogenas		1e-168
3prj_A	494	Role Of Packing Defects In The Evolution Of Alloste		1e-168
2q3e_A	467	Structure Of Human Udp-Glucose Dehydrogenase Comple		1e-168
4edf_A	494	Dimeric Hugdh, K94e Length = 494		1e-168
3khu_A	467	Crystal Structure Of Human Udp-Glucose Dehydrogenas		1e-168
3itk_A	467	Crystal Structure Of Human Udp-Glucose Dehydrogenas		1e-168
3tf5_A	493	Structure Of Udp-Glucose Dehydrogenase V132 Deletio		1e-166
2o3j_A	481	Structure Of Caenorhabditis Elegans Udp-Glucose Deh		1e-162
2y0e_A	478	Bcec And The Final Step Of Ugds Reaction Length = 4		3e-75
2y0c_A	478	Bcec Mutation Y10s Length = 478		3e-74
2y0d_A	478	Bcec Mutation Y10k Length = 478		4e-74
4a7p_A	446	Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase		5e-68
3gg2_A	450	Crystal Structure Of Udp-Glucose 6-Dehydrogenase Fr		4e-64
3vtf_A	444	Structure Of A Udp-Glucose Dehydrogenase From The H		2e-51
1mv8_A	436	1.55 A Crystal Structure Of A Ternary Complex Of Gd		1e-31
1mfz_A	436	Partially Refined 2.8 A Crystal Structure Of Gdp-Ma		2e-30
3ojl_A	431	Native Structure Of The Udp-N-Acetyl-Mannosamine De		1e-23
3g79_A	478	Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuro		8e-23
3pid_A	432	The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-T		1e-22
3phl_A	424	The Apo-Form Udp-Glucose 6-Dehydrogenase Length = 4		2e-22
1dli_A	402	The First Structure Of Udp-Glucose Dehydrogenase (U		8e-18
1dlj_A	402	The First Structure Of Udp-Glucose Dehydrogenase (U		7e-17

>pdb|3TDK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Length = 487

Iteration: 1
 Score =  589 bits (1518), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/468 (62%), Positives = 355/468 (75%), Gaps = 12/468 (2%)
Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KICCIGAGYVGGPT +VIA  CP+I V VVD++ SRI AWN   LPIYEPGL++VV  CR
Sbjct: 6   KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
           G+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KI
Sbjct: 66  GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
           V EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
           PEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
           ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
           +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L 
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
           IYDP+V  +QI  DLS      D  +         S+ V +  D Y+A   AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
           WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

>pdb|3PRJ|A Chain A, Role Of Packing Defects In The Evolution Of Allostery And Induced Fit In Human Udp-Glucose Dehydrogenase. Length = 494

Iteration: 1
 Score =  588 bits (1517), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/468 (62%), Positives = 355/468 (75%), Gaps = 12/468 (2%)
Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KICCIGAGYVGGPT +VIA  CP+I V VVD++ SRI AWN   LPIYEPGL++VV  CR
Sbjct: 6   KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
           G+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KI
Sbjct: 66  GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
           V EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
           PEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
           ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
           +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L 
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
           IYDP+V  +QI  DLS      D  +         S+ V +  D Y+A   AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
           WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

>pdb|2Q3E|A Chain A, Structure Of Human Udp-Glucose Dehydrogenase Complexed With Nadh And Udp-Glucose Length = 467

Iteration: 1
 Score =  588 bits (1516), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/468 (62%), Positives = 355/468 (75%), Gaps = 12/468 (2%)
Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KICCIGAGYVGGPT +VIA  CP+I V VVD++ SRI AWN   LPIYEPGL++VV  CR
Sbjct: 7   KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 66
Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
           G+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KI
Sbjct: 67  GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 126
Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
           V EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 127 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 186
Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
           PEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 187 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 246
Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
           ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct: 247 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306
Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
           +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L 
Sbjct: 307 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 366
Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
           IYDP+V  +QI  DLS      D  +         S+ V +  D Y+A   AH V I TE
Sbjct: 367 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 417
Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
           WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct: 418 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 465

>pdb|4EDF|A Chain A, Dimeric Hugdh, K94e Length = 494

Iteration: 1
 Score =  587 bits (1513), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 290/468 (61%), Positives = 355/468 (75%), Gaps = 12/468 (2%)
Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KICCIGAGYVGGPT +VIA  CP+I V VVD++ SRI AWN   LPIYEPGL++VV  CR
Sbjct: 6   KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
           G+NLFFST+I+  + EAD+VF+SVNTPT+T G+G G+AADL Y E+ AR I   SN  KI
Sbjct: 66  GKNLFFSTNIDDAIKEADLVFISVNTPTETYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
           V EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 185
Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
           PEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 186 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 245
Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
           ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct: 246 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 305
Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
           +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L 
Sbjct: 306 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 365
Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
           IYDP+V  +QI  DLS      D  +         S+ V +  D Y+A   AH V I TE
Sbjct: 366 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 416
Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
           WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct: 417 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 464

>pdb|3KHU|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Glu161gln, In Complex With Thiohemiacetal Intermediate Length = 467

Iteration: 1
 Score =  587 bits (1513), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 290/468 (61%), Positives = 355/468 (75%), Gaps = 12/468 (2%)
Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KICCIGAGYVGGPT +VIA  CP+I V VVD++ SRI AWN   LPIYEPGL++VV  CR
Sbjct: 7   KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 66
Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
           G+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KI
Sbjct: 67  GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 126
Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
           V EKSTVPV+ AE+I +I   N++  +  Q+LSNP+FLAEGTAI+DL NPDRVLIGG ET
Sbjct: 127 VTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPQFLAEGTAIKDLKNPDRVLIGGDET 186
Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
           PEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 187 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 246
Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
           ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct: 247 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306
Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
           +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L 
Sbjct: 307 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 366
Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
           IYDP+V  +QI  DLS      D  +         S+ V +  D Y+A   AH V I TE
Sbjct: 367 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 417
Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
           WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct: 418 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 465

>pdb|3ITK|A Chain A, Crystal Structure Of Human Udp-Glucose Dehydrogenase Thr131ala, Apo Form. Length = 467

Iteration: 1
 Score =  587 bits (1512), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 290/468 (61%), Positives = 354/468 (75%), Gaps = 12/468 (2%)
Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KICCIGAGYVGGPT +VIA  CP+I V VVD++ SRI AWN   LPIYEPGL++VV  CR
Sbjct: 7   KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 66
Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
           G+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KI
Sbjct: 67  GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 126
Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
           V EKS VPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 127 VTEKSAVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 186
Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
           PEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 187 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 246
Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
           ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct: 247 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 306
Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
           +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L 
Sbjct: 307 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 366
Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
           IYDP+V  +QI  DLS      D  +         S+ V +  D Y+A   AH V I TE
Sbjct: 367 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 417
Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
           WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct: 418 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 465

>pdb|3TF5|A Chain A, Structure Of Udp-Glucose Dehydrogenase V132 Deletion Length = 493

Iteration: 1
 Score =  582 bits (1501), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 290/468 (61%), Positives = 354/468 (75%), Gaps = 13/468 (2%)
Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KICCIGAGYVGGPT +VIA  CP+I V VVD++ SRI AWN   LPIYEPGL++VV  CR
Sbjct: 6   KICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCR 65
Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
           G+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  KI
Sbjct: 66  GKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKI 125
Query: 123 VVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRET 181
           V EKST PV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG ET
Sbjct: 126 VTEKST-PVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGDET 184
Query: 182 PEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG 241
           PEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEATG
Sbjct: 185 PEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATG 244
Query: 242 ADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK 301
           ADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QVI 
Sbjct: 245 ADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVID 304
Query: 302 VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLS 361
           +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A L 
Sbjct: 305 MNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLH 364
Query: 362 IYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTE 421
           IYDP+V  +QI  DLS      D  +         S+ V +  D Y+A   AH V I TE
Sbjct: 365 IYDPKVPREQIVVDLSHPGVSEDDQV---------SRLVTISKDPYEACDGAHAVVICTE 415
Query: 422 WDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGK 467
           WD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK
Sbjct: 416 WDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGK 463

>pdb|2O3J|A Chain A, Structure Of Caenorhabditis Elegans Udp-Glucose Dehydrogenase Length = 481

Iteration: 1
 Score =  567 bits (1461), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 272/471 (57%), Positives = 354/471 (75%), Gaps = 14/471 (2%)
Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           K+ C+GAGYVGGPT A+IA KCP I V VVD++ ++IA WN D+LPIYEPGL+++V   R
Sbjct: 11  KVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAAR 70
Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
           GRNLFFS+DI K +AEAD++F+SVNTPTK  G G G A DL Y ES +R IA  +   KI
Sbjct: 71  GRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKI 130
Query: 123 VVEKSTVPVKTAEAIEKILTH---NSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGR 179
           VVEKSTVPVK AE+I  IL     N+  +K+Q+LSNPEFLAEGTA++DL NPDRVLIGG 
Sbjct: 131 VVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIGGE 190
Query: 180 ETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239
            +PEG +A+  L  +Y +WVP +RIITTN WS+ELSKL ANAFLAQRISS+N++SA+CEA
Sbjct: 191 SSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEA 250
Query: 240 TGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQV 299
           TGA++++V+HA+G DTRIG +FL +SVGFGGSCFQKD+L+LVY+CE   L +VA+YW+ V
Sbjct: 251 TGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGV 310
Query: 300 IKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAK 359
           I +N++Q+ RF ++I++ +FNTV+ KKIAI GFAFKK+TGDTRE+ AI V K L+ + AK
Sbjct: 311 ININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAK 370
Query: 360 LSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCIL 419
           LS+YDP+V + Q+  DL+      D             + + V  D Y AA+ AH + +L
Sbjct: 371 LSVYDPKVQKSQMLNDLASVTSAQD-----------VERLITVESDPYAAARGAHAIVVL 419
Query: 420 TEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLD 470
           TEWDEF  L+Y +I ++M+ PA IFDGR ILD + LREIGF  ++IG   D
Sbjct: 420 TEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPD 470

>pdb|2Y0E|A Chain A, Bcec And The Final Step Of Ugds Reaction Length = 478

Iteration: 1
 Score =  279 bits (713), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 177/474 (37%), Positives = 267/474 (56%), Gaps = 29/474 (6%)
Query: 2   VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
           + +  IG+GYVG  T A +A      +V  +D+  ++I   N   +PI+EPGL++V+ + 
Sbjct: 9   MNLTIIGSGYVGLVTGACLADIGH--DVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARN 66
Query: 62  R--GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNS 119
           R  GR L FSTDIE  VA  D+ F++V TP    G     +ADL Y  +AAR I      
Sbjct: 67  RSAGR-LRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTG 120
Query: 120 NKIVVEKSTVPVKTAE----AIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVL 175
            K++V+KSTVPV TAE    A+ + L     +  + ++SNPEFL EG A+ D   PDR++
Sbjct: 121 FKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIV 180
Query: 176 IGGRETPEGQKAIQALKDVYAHW-VPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMS 234
           IG  +   G++A + +K +YA +    +R +  ++ SAE +K AANA LA RIS +N ++
Sbjct: 181 IGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELA 240
Query: 235 ALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVAN 294
            L +  GAD+  V   IG D RIG  FL +  G+GGSCF KD+  L+   + +G  +   
Sbjct: 241 NLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHG--QSLQ 298
Query: 295 YWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLL 354
             K V  VN  QK    ++IV+     ++G+  AI G AFK +T D RE P+ ++   LL
Sbjct: 299 ILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELL 358
Query: 355 GDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAH 414
              A+++ YDP V +++ +R +++     DHP  L+ +S         V D  QAA+DA 
Sbjct: 359 SRGARIAAYDP-VAQEEARRVIALDL--ADHPSWLERLS--------FVDDEAQAARDAD 407
Query: 415 GVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKP 468
            + I+TEW  FK+ D+  +    + P  IFDGRN+ + E + E G   + IG+P
Sbjct: 408 ALVIVTEWKIFKSPDFVALGRLWKTPV-IFDGRNLYEPETMSEQGIEYHPIGRP 460

>pdb|2Y0C|A Chain A, Bcec Mutation Y10s Length = 478

Iteration: 1
 Score =  275 bits (704), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 176/474 (37%), Positives = 266/474 (56%), Gaps = 29/474 (6%)
Query: 2   VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
           + +  IG+G VG  T A +A      +V  +D+  ++I   N   +PI+EPGL++V+ + 
Sbjct: 9   MNLTIIGSGSVGLVTGACLADIGH--DVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARN 66
Query: 62  R--GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNS 119
           R  GR L FSTDIE  VA  D+ F++V TP    G     +ADL Y  +AAR I      
Sbjct: 67  RSAGR-LRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTG 120
Query: 120 NKIVVEKSTVPVKTAE----AIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVL 175
            K++V+KSTVPV TAE    A+ + L     +  + ++SNPEFL EG A+ D   PDR++
Sbjct: 121 FKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIV 180
Query: 176 IGGRETPEGQKAIQALKDVYAHW-VPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMS 234
           IG  +   G++A + +K +YA +    +R +  ++ SAE +K AANA LA RIS +N ++
Sbjct: 181 IGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELA 240
Query: 235 ALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVAN 294
            L +  GAD+  V   IG D RIG  FL +  G+GGSCF KD+  L+   + +G  +   
Sbjct: 241 NLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHG--QSLQ 298
Query: 295 YWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLL 354
             K V  VN  QK    ++IV+     ++G+  AI G AFK +T D RE P+ ++   LL
Sbjct: 299 ILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELL 358
Query: 355 GDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAH 414
              A+++ YDP V +++ +R +++     DHP  L+ +S         V D  QAA+DA 
Sbjct: 359 SRGARIAAYDP-VAQEEARRVIALDL--ADHPSWLERLS--------FVDDEAQAARDAD 407
Query: 415 GVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKP 468
            + I+TEW  FK+ D+  +    + P  IFDGRN+ + E + E G   + IG+P
Sbjct: 408 ALVIVTEWKIFKSPDFVALGRLWKTPV-IFDGRNLYEPETMSEQGIEYHPIGRP 460

>pdb|2Y0D|A Chain A, Bcec Mutation Y10k Length = 478

Iteration: 1
 Score =  275 bits (703), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 176/474 (37%), Positives = 266/474 (56%), Gaps = 29/474 (6%)
Query: 2   VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
           + +  IG+G VG  T A +A      +V  +D+  ++I   N   +PI+EPGL++V+ + 
Sbjct: 9   MNLTIIGSGKVGLVTGACLADIGH--DVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARN 66
Query: 62  R--GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNS 119
           R  GR L FSTDIE  VA  D+ F++V TP    G     +ADL Y  +AAR I      
Sbjct: 67  RSAGR-LRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTG 120
Query: 120 NKIVVEKSTVPVKTAE----AIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVL 175
            K++V+KSTVPV TAE    A+ + L     +  + ++SNPEFL EG A+ D   PDR++
Sbjct: 121 FKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIV 180
Query: 176 IGGRETPEGQKAIQALKDVYAHW-VPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMS 234
           IG  +   G++A + +K +YA +    +R +  ++ SAE +K AANA LA RIS +N ++
Sbjct: 181 IGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELA 240
Query: 235 ALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVAN 294
            L +  GAD+  V   IG D RIG  FL +  G+GGSCF KD+  L+   + +G  +   
Sbjct: 241 NLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHG--QSLQ 298
Query: 295 YWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLL 354
             K V  VN  QK    ++IV+     ++G+  AI G AFK +T D RE P+ ++   LL
Sbjct: 299 ILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELL 358
Query: 355 GDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAH 414
              A+++ YDP V +++ +R +++     DHP  L+ +S         V D  QAA+DA 
Sbjct: 359 SRGARIAAYDP-VAQEEARRVIALDL--ADHPSWLERLS--------FVDDEAQAARDAD 407
Query: 415 GVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKP 468
            + I+TEW  FK+ D+  +    + P  IFDGRN+ + E + E G   + IG+P
Sbjct: 408 ALVIVTEWKIFKSPDFVALGRLWKTPV-IFDGRNLYEPETMSEQGIEYHPIGRP 460

>pdb|4A7P|A Chain A, Se-Met Derivatized Ugdg, Udp-Glucose Dehydrogenase From Sphingomonas Elodea Length = 446

Iteration: 1
 Score =  254 bits (650), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 165/473 (34%), Positives = 247/473 (52%), Gaps = 44/473 (9%)
Query: 2   VKICCIGAGYVGGPTMAVIALKCPK---IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVV 58
           V+I  IG GYVG     +++  C      EV  VD    +I   + +  PIYEPGL+ +V
Sbjct: 9   VRIAXIGTGYVG-----LVSGACFSDFGHEVVCVDKDARKIELLHQNVXPIYEPGLDALV 63
Query: 59  -TQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVS 117
            +  +   L F+TD+ + V +AD VF++V TP++    G G A DL+Y  +AAR IA   
Sbjct: 64  ASNVKAGRLSFTTDLAEGVKDADAVFIAVGTPSRR---GDGHA-DLSYVFAAAREIAENL 119
Query: 118 NSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIG 177
               ++V KSTVPV T + +E+I+   +     +++SNPEFL EG AI+D   PDRV++G
Sbjct: 120 TKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFLREGAAIEDFKRPDRVVVG 179
Query: 178 GRETPEGQKAIQALKDVYAHWVPEDR--IITTNLWSAELSKLAANAFLAQRISSVNAMSA 235
                E + A Q  +++Y          ++ T   ++EL K AANAFLA +I+ +N ++ 
Sbjct: 180 ----TEDEFARQVXREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIAD 235
Query: 236 LCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANY 295
           LCE  GADV +VS  IG D RIG +FL++  G+GGSCF KD L L      N        
Sbjct: 236 LCEQVGADVQEVSRGIGXDNRIGGKFLHAGPGYGGSCFPKDTLALXKTAADN--ETPLRI 293
Query: 296 WKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLG 355
            +  ++VND +K     +++ +    V GK + ILG  FK +T D R+ P++ +   L  
Sbjct: 294 VEATVQVNDARKRAXGRKVIKAXGGDVRGKTVGILGLTFKPNTDDXRDAPSLSIIAALQD 353
Query: 356 DKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHG 415
             A +  YDP+  E Q  + L+                      V  V + Y AA  A  
Sbjct: 354 AGATVKAYDPEGVE-QASKXLT---------------------DVEFVENPYAAADGADA 391
Query: 416 VCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKP 468
           + I+TEWD F+ LD  +I ++++ P  + D RNI    +L   G     +GKP
Sbjct: 392 LVIVTEWDAFRALDLTRIKNSLKSPVLV-DLRNIYPPAELERAGLQYTGVGKP 443

>pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From Porphyromonas Gingivalis Bound To Product Udp-Glucuronate Length = 450

Iteration: 1
 Score =  241 bits (616), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 156/457 (34%), Positives = 237/457 (51%), Gaps = 41/457 (8%)
Query: 2   VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ- 60
           + I  +G GYVG   ++          V  +D   ++I   N   +PIYEPGLE ++ + 
Sbjct: 3   LDIAVVGIGYVG--LVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARN 60
Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
            +   L F T+IE+ V EADI+F++V TP    G     +AD++Y   AAR I    +  
Sbjct: 61  VKAGRLRFGTEIEQAVPEADIIFIAVGTPAGEDG-----SADMSYVLDAARSIGRAMSRY 115
Query: 121 KIVVEKSTVPVKTAEAIEKILTH--NSRE--IKYQILSNPEFLAEGTAIQDLFNPDRVLI 176
            ++V KSTVPV +   I K +    + RE  I + I SNPEFL EG AI D   PDRV++
Sbjct: 116 ILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPDRVVV 175
Query: 177 GGRETPEGQKAIQALKDVYAHWVPED-RIITTNLWSAELSKLAANAFLAQRISSVNAMSA 235
           G     +  +A + +  +Y   +  + R++  ++ SAE++K AANA LA RIS +N ++ 
Sbjct: 176 G----VDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVAN 231
Query: 236 LCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANY 295
           LCE  GADV+ V   IG D+RIG +FL    G+GGSCF KD+  L+   E NG       
Sbjct: 232 LCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYR--MEV 289
Query: 296 WKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLG 355
            + V +VN+ QK+   ++  +     V G+ +AI G +FK  T D RE P++ + + LL 
Sbjct: 290 LEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLE 349
Query: 356 DKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHG 415
              ++ +YDP V   + Q+ L  K                    V    D Y A + A  
Sbjct: 350 VGCRVRVYDP-VAMKEAQKRLGDK--------------------VEYTTDMYDAVRGAEA 388
Query: 416 VCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDV 452
           +  +TEW EF+  D+  +   M   + + DGRN+ ++
Sbjct: 389 LFHVTEWKEFRMPDWSALSQAM-AASLVIDGRNVYEL 424

>pdb|3VTF|A Chain A, Structure Of A Udp-Glucose Dehydrogenase From The Hyperthermophilic Archaeon Pyrobaculum Islandicum Length = 444

Iteration: 1
 Score =  199 bits (507), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 139/438 (31%), Positives = 211/438 (48%), Gaps = 46/438 (10%)
Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           M  +  +G GYVG   +  +        V   D++ S +      +  IYEPGLE+ + +
Sbjct: 21  MASLSVLGLGYVG--VVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGR 78
Query: 61  C--RGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSN 118
               GR L F+   E+ VA  D  F++V TP    G     +ADL Y E+AAR +     
Sbjct: 79  ALSSGR-LSFAESAEEAVAATDATFIAVGTPPAPDG-----SADLRYVEAAARAVGRGIR 132
Query: 119 SN---KIVVEKSTVPVKTAEA-IEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRV 174
           +     +VV KSTVP  T E  + + +   +  +K+ + SNPEFL EG+A++D F PDR+
Sbjct: 133 AKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPEFLREGSALEDFFKPDRI 192
Query: 175 LIGGRETPEGQKAIQALKDVY-AHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAM 233
           +IG  +    ++A   L DVY A   P+   +      AEL K A+N FLA +IS  N +
Sbjct: 193 VIGAGD----ERAASFLLDVYKAVDAPK---LVMKPREAELVKYASNVFLALKISFANEV 245
Query: 234 SALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVA 293
             L +  G D  +V  A+G D RIG  +  + +GFGGSCF KD L  +   E  GL    
Sbjct: 246 GLLAKRLGVDTYRVFEAVGLDKRIGRHYFGAGLGFGGSCFPKDTLAFIRFGESLGLEMAI 305
Query: 294 NYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGL 353
           +  K V++VN+Y   R+  +++      + G+ + +LG AFK +T D RE+  ++V + L
Sbjct: 306 S--KAVLRVNEYMP-RYAVQLLEERLGGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLL 362
Query: 354 LGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDA 413
           L   A++ ++DP   E                              V  V D        
Sbjct: 363 LERGARVYVHDPMAMEKA---------------------RAVLGDSVTYVEDPQALLDQV 401
Query: 414 HGVCILTEWDEFKTLDYQ 431
            GV I T W +++ LDY+
Sbjct: 402 EGVIIATAWPQYEGLDYR 419

>pdb|1MV8|A Chain A, 1.55 A Crystal Structure Of A Ternary Complex Of Gdp-Mannose Dehydrogenase From Psuedomonas Aeruginosa Length = 436

Iteration: 1
 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/377 (28%), Positives = 179/377 (47%), Gaps = 32/377 (8%)
Query: 2   VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
           ++I   G GYVG      ++ +    EV  VD+S ++I   N  + PI EPGLE ++ Q 
Sbjct: 1   MRISIFGLGYVGAVCAGCLSARGH--EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQG 58
Query: 62  R--GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA----N 115
           R  GR L  +TD +K V ++D+ F+ V TP+K  G       DL Y E+  R I      
Sbjct: 59  RQTGR-LSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIRE 112
Query: 116 VSNSNKIVVEKSTVPVKTAEAIEKILTHNSRE---IKYQILSNPEFLAEGTAIQDLFNPD 172
            S  + +VV  + +P      +  ++   S +   + + + +NPEFL E TAI+D   P 
Sbjct: 113 KSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPP 172
Query: 173 RVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNA 232
             +IG  +   G      L+++Y     +  II   +  AE+ K   N + A +++  N 
Sbjct: 173 MTVIGELDKQTGD----LLEEIYREL--DAPIIRKTVEVAEMIKYTCNVWHAAKVTFANE 226
Query: 233 MSALCEATGADVTQVSHAIGKDTRIGPR--FLNSSVGFGGSCFQKDILNLVYICECNGLT 290
           +  + +A G D  +V   I +D ++     ++     FGGSC  KD+  L Y    + L 
Sbjct: 227 IGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTY--RASQLD 284
Query: 291 EVANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVC 350
                   +++ N  Q  +  + I S        +K+ +LG +FK  T D RE+P +++ 
Sbjct: 285 VEHPMLGSLMRSNSNQVQKAFDLITSH-----DTRKVGLLGLSFKAGTDDLRESPLVELA 339
Query: 351 KGLLGDKAKLSIYDPQV 367
           + L+G   +L I+D  V
Sbjct: 340 EMLIGKGYELRIFDRNV 356

>pdb|1MFZ|A Chain A, Partially Refined 2.8 A Crystal Structure Of Gdp-Mannose Dehydrogenase From P. Aeruginosa Length = 436

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/376 (28%), Positives = 175/376 (46%), Gaps = 32/376 (8%)
Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           +I   G GYVG      ++ +    EV  VD+S ++I   N  + PI EPGLE ++ Q R
Sbjct: 2   RISIFGLGYVGAVCAGCLSARGH--EVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR 59
Query: 63  --GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIA----NV 116
             GR L  +TD +K V ++D+ F+ V TP+K  G       DL Y E+  R I       
Sbjct: 60  QTGR-LSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREK 113
Query: 117 SNSNKIVVEKSTVPVKTAEAIEKILTHNSRE---IKYQILSNPEFLAEGTAIQDLFNPDR 173
           S  + +VV  + +P      +  ++   S +   + + + +NPEFL E TAI+D   P  
Sbjct: 114 SERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPX 173
Query: 174 VLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAM 233
            +IG  +   G      L+++Y     +  II   +  AE  K   N + A +++  N +
Sbjct: 174 TVIGELDKQTGD----LLEEIYREL--DAPIIRKTVEVAEXIKYTCNVWHAAKVTFANEI 227
Query: 234 SALCEATGADVTQVSHAIGKDTRIGPR--FLNSSVGFGGSCFQKDILNLVYICECNGLTE 291
             + +A G D  +V   I +D ++     +      FGGSC  KD+  L Y    + L  
Sbjct: 228 GNIAKAVGVDGREVXDVICQDHKLNLSRYYXRPGFAFGGSCLPKDVRALTY--RASQLDV 285
Query: 292 VANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCK 351
                  + + N  Q  +  + I S        +K+ +LG +FK  T D RE+P +++ +
Sbjct: 286 EHPXLGSLXRSNSNQVQKAFDLITSH-----DTRKVGLLGLSFKAGTDDLRESPLVELAE 340
Query: 352 GLLGDKAKLSIYDPQV 367
            L+G   +L I+D  V
Sbjct: 341 XLIGKGYELRIFDRNV 356

>pdb|3OJL|A Chain A, Native Structure Of The Udp-N-Acetyl-Mannosamine Dehydrogenase Cap5o From Staphylococcus Aureus Length = 431

Iteration: 1
 Score =  107 bits (268), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 116/459 (25%), Positives = 196/459 (42%), Gaps = 72/459 (15%)
Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           K+  +G GY+G PT  + A     ++V  VDI+   I      Q+ I EPGL++V  +  
Sbjct: 13  KLTVVGLGYIGLPTSIMFAKH--GVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVL 70
Query: 63  GRN-LFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSN 120
               L  ST  E     +D+  ++V TP         ++ D++    A   ++  +   N
Sbjct: 71  SSGKLKVSTTPEA----SDVFIIAVPTPNNDDQY---RSCDISLVMRALDSILPFLKKGN 123
Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQI--LSNPEFLAEGTAIQDLFNPDRVLIGG 178
            I+VE +  P    + ++ ++ +    I   I  +  PE +  G  +++L + +R+ IGG
Sbjct: 124 TIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRI-IGG 182
Query: 179 RETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238
                 +  I+A K VY  +V +  +I T+  +AE+SKL  N +    I+  N ++ +C 
Sbjct: 183 VT----KACIEAGKRVYRTFV-QGEMIETDARTAEMSKLMENTYRDVNIALANELTKICN 237
Query: 239 ATGADVTQVSHAIGKDTRI-----GPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVA 293
               +V  V     K  R+     GP       G GG C   D   ++         E A
Sbjct: 238 NLNINVLDVIEMANKHPRVNIHQPGP-------GVGGHCLAVDPYFIIA-----KDPENA 285
Query: 294 NYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGL 353
              +   ++N+     +V      +   +SG K+ + G  +K D  D RE+PA D+ + L
Sbjct: 286 KLIQTGREINNSMP-AYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAFDIYE-L 343
Query: 354 LGDKAKLSI--YDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAK 411
           L  +  + +  YDP V  D ++ D+S                               A K
Sbjct: 344 LNQEPDIEVCAYDPHVELDFVEHDMS------------------------------HAVK 373
Query: 412 DAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNIL 450
           DA  V IL++  EFK L     FD M+    IFD +N++
Sbjct: 374 DASLVLILSDHSEFKNLSDSH-FDKMKHKV-IFDTKNVV 410

>pdb|3G79|A Chain A, Crystal Structure Of Ndp-N-Acetyl-D-Galactosaminuronic Acid Dehydrogenase From Methanosarcina Mazei Go1 Length = 478

Iteration: 1
 Score =  105 bits (261), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 116/491 (23%), Positives = 208/491 (42%), Gaps = 66/491 (13%)
Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAV-----VDISVSRIAAWNGDQLPIY--EPGLE 55
           KI  +G GYVG P  AV+    P  E  +        S  +I   N  + P+   EPGLE
Sbjct: 20  KIGVLGMGYVGIPA-AVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLE 78
Query: 56  DVVTQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAN 115
           +++ +      F  T     ++E D V +++ TP            D +      R +  
Sbjct: 79  ELIGKVVKAGKFECTPDFSRISELDAVTLAIQTPFANP---KDLEPDFSALIDGIRNVGK 135
Query: 116 VSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIK----YQILSNPEFLAEGTAIQDLFNP 171
                 +VV +ST+   T E + K +      +K    + +   PE +  G  ++++   
Sbjct: 136 YLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIREH 195
Query: 172 DRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVN 231
           DR+ +GG +    ++A++    +Y+  +   ++I  +  +AE++K A N F   +I+++N
Sbjct: 196 DRI-VGGIDEASTKRAVE----LYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAIN 250
Query: 232 AMSALCEATGADVTQVSHAIG--KDTRIGPRFLNSSVGFGGSCFQKDILNL-----VYIC 284
            ++  CEA G +V  V   +   K   I    L    G GG C  KD  +L     +   
Sbjct: 251 QLALYCEAMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRG 310
Query: 285 ECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSS---MFNTVSGKKIAILGFAFKKDTGDT 341
           E +      + +    KVND+      N  V++   +   + G K+A+LG+AF KD+ D 
Sbjct: 311 ELDYPEGADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSDDA 370
Query: 342 RETPA---IDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK 398
           R TP+    D+C   L   A + ++DP V                ++P            
Sbjct: 371 RNTPSEPYRDLC---LKAGASVMVHDPYVV---------------NYP------------ 400
Query: 399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTL--DYQKIFDNMRKPAYIFDGRNILDVEKLR 456
            V +  +  +  ++A  + +L     + +L  D+ K       P  I DGRN+++ ++  
Sbjct: 401 GVEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANPV-IIDGRNVIEPDEFI 459
Query: 457 EIGFIVYSIGK 467
             GF+   IG+
Sbjct: 460 GKGFVYKGIGR 470

>pdb|3PID|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase With A C-Terminal Six- Histidine Tag Length = 432

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 178/394 (45%), Gaps = 42/394 (10%)
Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
            +KI   G GYVG     +IA      EV  +DI  +++   N    PI +  +++ + +
Sbjct: 36  FMKITISGTGYVGLSNGVLIAQNH---EVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE 92
Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPT----KTQGLGAGKAADLTYWESAARMIANV 116
              + L F    +KH A  +  +V + TPT    KT         + +  E+  R +  +
Sbjct: 93  ---KPLNFRATTDKHDAYRNADYVIIATPTDYDPKTNYF------NTSTVEAVIRDVTEI 143
Query: 117 SNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLI 176
            N N +++ KST+PV     I++ L  ++      ++ +PEFL EG A+ D  +P R++I
Sbjct: 144 -NPNAVMIIKSTIPVGFTRDIKERLGIDN------VIFSPEFLREGRALYDNLHPSRIVI 196
Query: 177 GGRETPEGQKAIQALKD-VYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSA 235
           G R +   ++    LK+      +P    + T+   AE  KL AN +LA R++  N + +
Sbjct: 197 GER-SARAERFADLLKEGAIKQDIP---TLFTDSTEAEAIKLFANTYLALRVAYFNELDS 252
Query: 236 LCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANY 295
             E+ G +  Q+   +  D RIG  + N S G+GG C  KD   L+     N  +   N 
Sbjct: 253 YAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL----ANYESVPNNI 308
Query: 296 WKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLG 355
              ++  N  +K+   + I++        K + +     K  + + R +    + K +  
Sbjct: 309 IAAIVDANRTRKDFIADSILAR-----KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKA 363
Query: 356 DKAKLSIYDPQVTEDQ-----IQRDLSMKKFDWD 384
               + IY+P + ED+     + RDL+  K + D
Sbjct: 364 KGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEAD 397

>pdb|3PHL|A Chain A, The Apo-Form Udp-Glucose 6-Dehydrogenase Length = 424

Iteration: 1
 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 178/394 (45%), Gaps = 42/394 (10%)
Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
            +KI   G GYVG     +IA      EV  +DI  +++   N    PI +  +++ + +
Sbjct: 36  FMKITISGTGYVGLSNGVLIAQNH---EVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE 92
Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPT----KTQGLGAGKAADLTYWESAARMIANV 116
              + L F    +KH A  +  +V + TPT    KT         + +  E+  R +  +
Sbjct: 93  ---KPLNFRATTDKHDAYRNADYVIIATPTDYDPKTNYF------NTSTVEAVIRDVTEI 143
Query: 117 SNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLI 176
            N N +++ KST+PV     I++ L  ++      ++ +PEFL EG A+ D  +P R++I
Sbjct: 144 -NPNAVMIIKSTIPVGFTRDIKERLGIDN------VIFSPEFLREGRALYDNLHPSRIVI 196
Query: 177 GGRETPEGQKAIQALKD-VYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSA 235
           G R +   ++    LK+      +P    + T+   AE  KL AN +LA R++  N + +
Sbjct: 197 GER-SARAERFADLLKEGAIKQDIP---TLFTDSTEAEAIKLFANTYLALRVAYFNELDS 252
Query: 236 LCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANY 295
             E+ G +  Q+   +  D RIG  + N S G+GG C  KD   L+     N  +   N 
Sbjct: 253 YAESQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLL----ANYESVPNNI 308
Query: 296 WKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLG 355
              ++  N  +K+   + I++        K + +     K  + + R +    + K +  
Sbjct: 309 IAAIVDANRTRKDFIADSILAR-----KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKA 363
Query: 356 DKAKLSIYDPQVTEDQ-----IQRDLSMKKFDWD 384
               + IY+P + ED+     + RDL+  K + D
Sbjct: 364 KGIPVIIYEPVMQEDEFFNSRVVRDLNAFKQEAD 397

>pdb|1DLI|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh) Reveals The Catalytic Residues Necessary For The Two-Fold Oxidation Length = 402

Iteration: 1
 Score = 88.6 bits (218), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 168/383 (43%), Gaps = 36/383 (9%)
Query: 2   VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
           +KI   G+GYVG     +++L+    EV +VDI  S++   N    PI +  +E      
Sbjct: 1   MKIAVAGSGYVGLSLGVLLSLQN---EVTIVDILPSKVDKINNGLSPIQDEYIE---YYL 54
Query: 62  RGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNK 121
           + + L     ++   A  +   V + TPT           D  + E+  + + +V NS+ 
Sbjct: 55  KSKQLSIKATLDSKAAYKEAELVIIATPTNYNS--RINYFDTQHVETVIKEVLSV-NSHA 111
Query: 122 IVVEKSTVPVK-TAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
            ++ KST+P+    E  +K  T        +I+ +PEFL E  A+ D   P R+++   E
Sbjct: 112 TLIIKSTIPIGFITEMRQKFQTD-------RIIFSPEFLRESKALYDNLYPSRIIVSCEE 164
Query: 181 T------PEGQKAIQALKDV-YAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAM 233
                   + +K    LK     + VP   ++      AE  KL AN +LA R++  N +
Sbjct: 165 NDSPKVKADAEKFALLLKSAAKKNNVP---VLIMGASEAEAVKLFANTYLALRVAYFNEL 221
Query: 234 SALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVA 293
               E+   +   +   I  D RIG  + N S G+GG C  KD   L  +   N + +  
Sbjct: 222 DTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYCLPKDTKQL--LANYNNIPQTL 279
Query: 294 NYWKQVIKVNDYQKNRFVNRIVSSMFNTVSG-KKIAILGFAFKKDTGDTRETPAIDVCKG 352
              + ++  N+ +K+    +I++ +    S  K + +     K ++ + RE+   DV   
Sbjct: 280 --IEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDI 337
Query: 353 LLGDKAKLSIYDPQV----TEDQ 371
           L     K+ IY+P +    +EDQ
Sbjct: 338 LKSKDIKIIIYEPMLNKLESEDQ 360

>pdb|1DLJ|A Chain A, The First Structure Of Udp-Glucose Dehydrogenase (Udpgdh) Reveals The Catalytic Residues Necessary For The Two-Fold Oxidation Length = 402

Iteration: 1
 Score = 85.1 bits (209), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 167/383 (43%), Gaps = 36/383 (9%)
Query: 2   VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC 61
           +KI   G+GYVG     +++L+    EV +VDI  S++   N    PI +  +E      
Sbjct: 1   MKIAVAGSGYVGLSLGVLLSLQN---EVTIVDILPSKVDKINNGLSPIQDEYIE---YYL 54
Query: 62  RGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNK 121
           + + L     ++   A  +   V + TPT           D  + E+  + + +V NS+ 
Sbjct: 55  KSKQLSIKATLDSKAAYKEAELVIIATPTNYNS--RINYFDTQHVETVIKEVLSV-NSHA 111
Query: 122 IVVEKSTVPVK-TAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
            ++ KST+P+    E  +K  T        +I+ +PEFL E  A+ D   P R+++   E
Sbjct: 112 TLIIKSTIPIGFITEMRQKFQTD-------RIIFSPEFLRESKALYDNLYPSRIIVSCEE 164
Query: 181 T------PEGQKAIQALKDV-YAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAM 233
                   + +K    LK     + VP   ++      AE  KL AN +LA R++  N +
Sbjct: 165 NDSPKVKADAEKFALLLKSAAKKNNVP---VLIMGASEAEAVKLFANTYLALRVAYFNEL 221
Query: 234 SALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVA 293
               E+   +   +   I  D RIG  + N S G+GG    KD   L  +   N + +  
Sbjct: 222 DTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQL--LANYNNIPQTL 279
Query: 294 NYWKQVIKVNDYQKNRFVNRIVSSMFNTVSG-KKIAILGFAFKKDTGDTRETPAIDVCKG 352
              + ++  N+ +K+    +I++ +    S  K + +     K ++ + RE+   DV   
Sbjct: 280 --IEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDI 337
Query: 353 LLGDKAKLSIYDPQV----TEDQ 371
           L     K+ IY+P +    +EDQ
Sbjct: 338 LKSKDIKIIIYEPMLNKLESEDQ 360

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	480
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	0.0
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	0.0
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	1e-161
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	1e-155
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	1e-136
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	1e-106
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	1e-105
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	2e-99
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	2e-54
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	4e-13
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	7e-04
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	7e-04

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} Length = 481

 Score =  794 bits (2052), Expect = 0.0
 Identities = 271/477 (56%), Positives = 355/477 (74%), Gaps = 14/477 (2%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           + K+ C+GAGYVGGPT A+IA KCP I V VVD++ ++IA WN D+LPIYEPGL+++V  
Sbjct: 9   VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFA 68

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
            RGRNLFFS+DI K +AEAD++F+SVNTPTK  G G G A DL Y ES +R IA  +   
Sbjct: 69  ARGRNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGP 128

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSR---EIKYQILSNPEFLAEGTAIQDLFNPDRVLIG 177
           KIVVEKSTVPVK AE+I  IL    +    +K+Q+LSNPEFLAEGTA++DL NPDRVLIG
Sbjct: 129 KIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAMKDLANPDRVLIG 188

Query: 178 GRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC 237
           G  +PEG +A+  L  +Y +WVP +RIITTN WS+ELSKL ANAFLAQRISS+N++SA+C
Sbjct: 189 GESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVC 248

Query: 238 EATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWK 297
           EATGA++++V+HA+G DTRIG +FL +SVGFGGSCFQKD+L+LVY+CE   L +VA+YW+
Sbjct: 249 EATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQ 308

Query: 298 QVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDK 357
            VI +N++Q+ RF ++I++ +FNTV+ KKIAI GFAFKK+TGDTRE+ AI V K L+ + 
Sbjct: 309 GVININNWQRRRFADKIIAELFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEH 368

Query: 358 AKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVC 417
           AKLS+YDP+V + Q+  DL+      D             + + V  D Y AA+ AH + 
Sbjct: 369 AKLSVYDPKVQKSQMLNDLASVTSAQDVE-----------RLITVESDPYAAARGAHAIV 417

Query: 418 ILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWHK 474
           +LTEWDEF  L+Y +I ++M+ PA IFDGR ILD + LREIGF  ++IG   D  + 
Sbjct: 418 VLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPDQAYN 474

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A Length = 467

 Score =  789 bits (2041), Expect = 0.0
 Identities = 290/472 (61%), Positives = 356/472 (75%), Gaps = 12/472 (2%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           + KICCIGAGYVGGPT +VIA  CP+I V VVD++ SRI AWN   LPIYEPGL++VV  
Sbjct: 5   IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVES 64

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
           CRG+NLFFST+I+  + EAD+VF+SVNTPTKT G+G G+AADL Y E+ AR I   SN  
Sbjct: 65  CRGKNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGY 124

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGR 179
           KIV EKSTVPV+ AE+I +I   N++  +  Q+LSNPEFLAEGTAI+DL NPDRVLIGG 
Sbjct: 125 KIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIKDLKNPDRVLIGGD 184

Query: 180 ETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239
           ETPEGQ+A+QAL  VY HWVP ++I+TTN WS+ELSKLAANAFLAQRISS+N++SALCEA
Sbjct: 185 ETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEA 244

Query: 240 TGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQV 299
           TGADV +V+ AIG D RIG +FL +SVGFGGSCFQKD+LNLVY+CE   L EVA YW+QV
Sbjct: 245 TGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQV 304

Query: 300 IKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAK 359
           I +NDYQ+ RF +RI+ S+FNTV+ KKIAILGFAFKKDTGDTRE+ +I + K L+ + A 
Sbjct: 305 IDMNDYQRRRFASRIIDSLFNTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAH 364

Query: 360 LSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCIL 419
           L IYDP+V  +QI  DLS      D  +          + V +  D Y+A   AH V I 
Sbjct: 365 LHIYDPKVPREQIVVDLSHPGVSEDDQVS---------RLVTISKDPYEACDGAHAVVIC 415

Query: 420 TEWDEFKTLDYQKIFDNMRKPAYIFDGRNILD--VEKLREIGFIVYSIGKPL 469
           TEWD FK LDY++I   M KPA+IFDGR +LD    +L+ IGF + +IGK +
Sbjct: 416 TEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKKV 467

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* Length = 478

 Score =  463 bits (1195), Expect = e-161
 Identities = 167/474 (35%), Positives = 253/474 (53%), Gaps = 31/474 (6%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
            +  IG+G VG  T A +A     I  +V  +D+  ++I   N   +PI+EPGL++V+ +
Sbjct: 10  NLTIIGSGSVGLVTGACLA----DIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIAR 65

Query: 61  -CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNS 119
                 L FSTDIE  VA  D+ F++V TP    G     +ADL Y  +AAR I      
Sbjct: 66  NRSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTG 120

Query: 120 NKIVVEKSTVPVKTAEAIEKI----LTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVL 175
            K++V+KSTVPV TAE +       L     +  + ++SNPEFL EG A+ D   PDR++
Sbjct: 121 FKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNPEFLKEGAAVDDFTRPDRIV 180

Query: 176 IGGRETPEGQKAIQALKDVYAHWV-PEDRIITTNLWSAELSKLAANAFLAQRISSVNAMS 234
           IG  +   G++A + +K +YA +    +R +  ++ SAE +K AANA LA RIS +N ++
Sbjct: 181 IGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELA 240

Query: 235 ALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVAN 294
            L +  GAD+  V   IG D RIG  FL +  G+GGSCF KD+  L+   + +G +    
Sbjct: 241 NLADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQS--LQ 298

Query: 295 YWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLL 354
             K V  VN  QK    ++IV+     ++G+  AI G AFK +T D RE P+ ++   LL
Sbjct: 299 ILKAVSSVNATQKRVLADKIVARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELL 358

Query: 355 GDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAH 414
              A+++ YDP           + ++             P   ++++ V D  QAA+DA 
Sbjct: 359 SRGARIAAYDPV----------AQEEARRVIA-LDLADHPSWLERLSFVDDEAQAARDAD 407

Query: 415 GVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKP 468
            + I+TEW  FK+ D+  +    + P  IFDGRN+ + E + E G   + IG+P
Sbjct: 408 ALVIVTEWKIFKSPDFVALGRLWKTPV-IFDGRNLYEPETMSEQGIEYHPIGRP 460

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} Length = 450

 Score =  448 bits (1155), Expect = e-155
 Identities = 157/474 (33%), Positives = 237/474 (50%), Gaps = 47/474 (9%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
            I  +G GYVG  +    A    ++   V  +D   ++I   N   +PIYEPGLE ++ +
Sbjct: 4   DIAVVGIGYVGLVSATCFA----ELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIAR 59

Query: 61  -CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNS 119
             +   L F T+IE+ V EADI+F++V TP    G     +AD++Y   AAR I    + 
Sbjct: 60  NVKAGRLRFGTEIEQAVPEADIIFIAVGTPAGEDG-----SADMSYVLDAARSIGRAMSR 114

Query: 120 NKIVVEKSTVPVKTAEAIEKI----LTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVL 175
             ++V KSTVPV +   I K     L      I + I SNPEFL EG AI D   PDRV+
Sbjct: 115 YILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMKPDRVV 174

Query: 176 IGGRETPEGQKAIQALKDVYAHWV-PEDRIITTNLWSAELSKLAANAFLAQRISSVNAMS 234
           +G     +  +A + +  +Y   +    R++  ++ SAE++K AANA LA RIS +N ++
Sbjct: 175 VGV----DSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVA 230

Query: 235 ALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVAN 294
            LCE  GADV+ V   IG D+RIG +FL    G+GGSCF KD+  L+   E NG      
Sbjct: 231 NLCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYR--ME 288

Query: 295 YWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLL 354
             + V +VN+ QK+   ++  +     V G+ +AI G +FK  T D RE P++ + + LL
Sbjct: 289 VLEAVERVNEKQKSILFDKFSTYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLL 348

Query: 355 GDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAH 414
               ++ +YDP           +MK+                  +V    D Y A + A 
Sbjct: 349 EVGCRVRVYDPV----------AMKEAQKRLG-----------DKVEYTTDMYDAVRGAE 387

Query: 415 GVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKP 468
            +  +TEW EF+  D+  +   M     + DGRN+ +     +  F + +IG  
Sbjct: 388 ALFHVTEWKEFRMPDWSALSQAMAAS-LVIDGRNVYE--LPADSDFTLLNIGNS 438

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* Length = 436

 Score =  399 bits (1029), Expect = e-136
 Identities = 113/468 (24%), Positives = 198/468 (42%), Gaps = 52/468 (11%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
           +I   G GYVG      ++        EV  VD+S ++I   N  + PI EPGLE ++ Q
Sbjct: 2   RISIFGLGYVGAVCAGCLS----ARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQ 57

Query: 61  CR--GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV-- 116
            R  GR L  +TD +K V ++D+ F+ V TP+K  G       DL Y E+  R I     
Sbjct: 58  GRQTGR-LSGTTDFKKAVLDSDVSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIR 111

Query: 117 -SNSNKIVVEKSTVPVKTAE----AIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNP 171
             +    VV +STV   T       + +  +     + + + +NPEFL E TAI+D   P
Sbjct: 112 EKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFP 171

Query: 172 DRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVN 231
              +IG       ++    L+++Y     +  II   +  AE+ K   N + A +++  N
Sbjct: 172 PMTVIGE----LDKQTGDLLEEIYREL--DAPIIRKTVEVAEMIKYTCNVWHAAKVTFAN 225

Query: 232 AMSALCEATGADVTQVSHAIGKDTRIG--PRFLNSSVGFGGSCFQKDILNLVYICECNGL 289
            +  + +A G D  +V   I +D ++     ++     FGGSC  KD+  L Y      +
Sbjct: 226 EIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDV 285

Query: 290 TEVANYWKQVIKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDV 349
                    +++ N  Q  +  + I S        +K+ +LG +FK  T D RE+P +++
Sbjct: 286 E--HPMLGSLMRSNSNQVQKAFDLITS-----HDTRKVGLLGLSFKAGTDDLRESPLVEL 338

Query: 350 CKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQA 409
            + L+G   +L I+D  V  +  +   + K++      H+  +         +V D  + 
Sbjct: 339 AEMLIGKGYELRIFDRNV--EYARVHGANKEYIESKIPHVSSL---------LVSDLDEV 387

Query: 410 AKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLRE 457
              +  + +    + F  L    +         + D    +      +
Sbjct: 388 VASSDVLVLGNGDELFVDL----VNKTPSGKK-LVDLVGFMPHTTTAQ 430

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* Length = 402

 Score =  320 bits (822), Expect = e-106
 Identities = 92/444 (20%), Positives = 176/444 (39%), Gaps = 63/444 (14%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KI   G+GYVG     +++L+    EV +VDI  S++   N    PI +  +E  +   +
Sbjct: 2   KIAVAGSGYVGLSLGVLLSLQ---NEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQ 58

Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
              +  + D +    EA++V ++  T             D  + E+  + + +V NS+  
Sbjct: 59  LS-IKATLDSKAAYKEAELVIIATPTNYN----SRINYFDTQHVETVIKEVLSV-NSHAT 112

Query: 123 VVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGG---R 179
           ++ KST+P+     + +    +       I+ +PEFL E  A+ D   P R+++      
Sbjct: 113 LIIKSTIPIGFITEMRQKFQTDR------IIFSPEFLRESKALYDNLYPSRIIVSCEEND 166

Query: 180 ETPEGQKAIQALKDVYAHWVPED-RIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE 238
                  A +    + +     +  ++      AE  KL AN +LA R++  N +    E
Sbjct: 167 SPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAE 226

Query: 239 ATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYW-- 296
           +   +   +   I  D RIG  + N S G+GG    KD   L           +ANY   
Sbjct: 227 SRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQL-----------LANYNNI 275

Query: 297 -----KQVIKVNDYQKNRFVNRIVSSMFNTVS-GKKIAILGFAFKKDTGDTRETPAIDVC 350
                + ++  N+ +K+    +I++ +    S  K + +     K ++ + RE+   DV 
Sbjct: 276 PQTLIEAIVSSNNVRKSYIAKQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVI 335

Query: 351 KGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAA 410
             L     K+ IY+P + + + +                         Q  +V D     
Sbjct: 336 DILKSKDIKIIIYEPMLNKLESE------------------------DQSVLVNDLENFK 371

Query: 411 KDAHGVCILTEWDEFKTLDYQKIF 434
           K A+ +      +E + +   K++
Sbjct: 372 KQANIIVTNRYDNELQDVK-NKVY 394

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* Length = 432

 Score =  318 bits (818), Expect = e-105
 Identities = 92/427 (21%), Positives = 169/427 (39%), Gaps = 54/427 (12%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ 60
            +KI   G GYVG     +IA      EV  +DI  +++   N    PI +  +++ + +
Sbjct: 36  FMKITISGTGYVGLSNGVLIA---QNHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAE 92

Query: 61  CRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSN 120
                   +TD       AD V ++  T             + +  E+  R +  + N N
Sbjct: 93  KPLN-FRATTDKHDAYRNADYVIIATPTDYD----PKTNYFNTSTVEAVIRDVTEI-NPN 146

Query: 121 KIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE 180
            +++ KST+PV     I++ L  ++      ++ +PEFL EG A+ D  +P R++IG   
Sbjct: 147 AVMIIKSTIPVGFTRDIKERLGIDN------VIFSPEFLREGRALYDNLHPSRIVIGE-- 198

Query: 181 TPEGQKAIQALKDVYAHWVPED-RIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA 239
                +A +    +    + +D   + T+   AE  KL AN +LA R++  N + +  E+
Sbjct: 199 --RSARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAES 256

Query: 240 TGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQV 299
            G +  Q+   +  D RIG  + N S G+GG C  KD   L+   E      +      +
Sbjct: 257 QGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLANYESVPNNII----AAI 312

Query: 300 IKVNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAK 359
           +  N  +K+   + I++        K + +     K  + + R +    + K +      
Sbjct: 313 VDANRTRKDFIADSILA-----RKPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGIP 367

Query: 360 LSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCIL 419
           + IY+P + ED+                              VV D     ++A  +   
Sbjct: 368 VIIYEPVMQEDEF-------------------------FNSRVVRDLNAFKQEADVIISN 402

Query: 420 TEWDEFK 426
              +E  
Sbjct: 403 RMAEELA 409

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} Length = 478

 Score =  306 bits (785), Expect = 2e-99
 Identities = 110/496 (22%), Positives = 195/496 (39%), Gaps = 60/496 (12%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI----SVSRIAAWNGDQLPIY--EPGL 54
           + KI  +G GYVG P   + A      +V         S  +I   N  + P+   EPGL
Sbjct: 18  IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGL 77

Query: 55  EDVVTQCRGR-NLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMI 113
           E+++ +         + D  + ++E D V +++ TP            D +      R +
Sbjct: 78  EELIGKVVKAGKFECTPDFSR-ISELDAVTLAIQTPFANPKDLE---PDFSALIDGIRNV 133

Query: 114 ANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIK----YQILSNPEFLAEGTAIQDLF 169
                   +VV +ST+   T E + K +      +K    + +   PE +  G  ++++ 
Sbjct: 134 GKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFALAHAPERVMVGRLLKNIR 193

Query: 170 NPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISS 229
             DR+ +GG       K    L   Y+  +   ++I  +  +AE++K A N F   +I++
Sbjct: 194 EHDRI-VGG-IDEASTKRAVEL---YSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAA 248

Query: 230 VNAMSALCEATGADVTQVSHAIG--KDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECN 287
           +N ++  CEA G +V  V   +   K   I    L    G GG C  KD  +L    +  
Sbjct: 249 INQLALYCEAMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIG 308

Query: 288 GL-TEVANYWKQVIK----VNDYQKNRFVNRIVSSMFN---TVSGKKIAILGFAFKKDTG 339
               +       +      VND+      N  V+++      + G K+A+LG+AF KD+ 
Sbjct: 309 RGELDYPEGADSIYVLARKVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSD 368

Query: 340 DTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ 399
           D R TP+       L   A + ++DP V                                
Sbjct: 369 DARNTPSEPYRDLCLKAGASVMVHDPYVVNY---------------------------PG 401

Query: 400 VNVVWDAYQAAKDAHGVCILTEWDEFKTL--DYQKIFDNMRKPAYIFDGRNILDVEKLRE 457
           V +  +  +  ++A  + +L     + +L  D+ K       P  I DGRN+++ ++   
Sbjct: 402 VEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANPV-IIDGRNVIEPDEFIG 460

Query: 458 IGFIVYSIGKPLDPWH 473
            GF+   IG+     H
Sbjct: 461 KGFVYKGIGREGHHHH 476

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* Length = 431

 Score =  187 bits (476), Expect = 2e-54
 Identities = 110/484 (22%), Positives = 193/484 (39%), Gaps = 82/484 (16%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           K+  +G GY+G PT  + A     ++V  VDI+   I      Q+ I EPGL++V  +  
Sbjct: 13  KLTVVGLGYIGLPTSIMFAKH--GVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVL 70

Query: 63  GR-NLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNK 121
               L  ST  E     +D+  ++V TP         ++ D++    A   I        
Sbjct: 71  SSGKLKVSTTPE----ASDVFIIAVPTPNND---DQYRSCDISLVMRALDSILPFLKKGN 123

Query: 122 IVVEKSTVPVK-TAEAIEKILTHNSREIKYQILSNPEFLA---E----GTAIQDLFNPDR 173
            ++ +ST+  K   + ++ ++ +    I   I     +L    E    G  +++L + +R
Sbjct: 124 TIIVESTIAPKTMDDFVKPVIENLGFTIGEDI-----YLVHCPERVLPGKILEELVHNNR 178

Query: 174 VLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAM 233
           + IGG  T    +A + +   Y  +V +  +I T+  +AE+SKL  N +    I+  N +
Sbjct: 179 I-IGG-VTKACIEAGKRV---YRTFV-QGEMIETDARTAEMSKLMENTYRDVNIALANEL 232

Query: 234 SALCEATGADVTQVSHAIGKDTRIGPRF--LNSSVGFGGSCFQKDILNLVYICECNGLTE 291
           + +C     +V  V     K     PR        G GG C   D     +      +  
Sbjct: 233 TKICNNLNINVLDVIEMANKH----PRVNIHQPGPGVGGHCLAVDPY---F------IIA 279

Query: 292 VANYWKQVIK----VNDYQKNRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAI 347
                 ++I+    +N+     +V      +   +SG K+ + G  +K D  D RE+PA 
Sbjct: 280 KDPENAKLIQTGREINNS-MPAYVVDTTKQIIKALSGNKVTVFGLTYKGDVDDIRESPAF 338

Query: 348 DVCKGLLGDK-AKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDA 406
           D+ + L  +   ++  YDP V  D ++ D+S                             
Sbjct: 339 DIYELLNQEPDIEVCAYDPHVELDFVEHDMS----------------------------- 369

Query: 407 YQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIG 466
             A KDA  V IL++  EFK L       +  K   IFD +N++       + +   +I 
Sbjct: 370 -HAVKDASLVLILSDHSEFKNLSDSHF--DKMKHKVIFDTKNVVKSSFEDVLYYNYGNIF 426

Query: 467 KPLD 470
             +D
Sbjct: 427 NFID 430

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* Length = 404

 Score = 69.9 bits (170), Expect = 4e-13
 Identities = 34/223 (15%), Positives = 71/223 (31%), Gaps = 33/223 (14%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN----GDQLPIYEPGLEDVV 58
           K+C  G G  G  T++ +A     +EV V+ +       W      D+L +     +   
Sbjct: 4   KVCVCGGGN-GAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQ 62

Query: 59  TQCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSN 118
           T+ + R    + D E  ++ AD+V ++V                    E   + +A    
Sbjct: 63  TEVKSRPKVITKDPEIAISGADVVILTVPA---------------FAHEGYFQAMAPYVQ 107

Query: 119 SNKIVVEKSTVPVKT--AEAIEKILTHNSREIKYQILSNPEFLAE----GTAIQDLFNPD 172
            + ++V    +P +         IL   +  +         +       G  ++ L    
Sbjct: 108 DSALIV---GLPSQAGFEFQCRDILGDKAAAVSMMSFETLPWACRIKEFGRKVEVLGTKS 164

Query: 173 RVLI----GGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWS 211
            +      G  +T +    +Q L      +      +   + S
Sbjct: 165 VLAASLIKGTAKTVDPLSTLQMLHGAEPVFRLAKHFLEMLIMS 207

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.9 bits (157), Expect = 4e-11
 Identities = 83/624 (13%), Positives = 153/624 (24%), Gaps = 234/624 (37%)

Query: 32  VDISVSRIAAWNGDQLPIYEPGL-EDVVTQCRGRNLFFSTDIEKHV---AEADIVFVSVN 87
           +D           D L ++E    ++    C+        D+ K +    E D +   + 
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAFVDNF--DCK-----DVQDMPKSILSKEEIDHI---IM 56

Query: 88  TPTKTQGLGAGKAADLTYW-------ESAARMIANVSNSN------KIVVE---KSTVPV 131
           +     G          +W       E   + +  V   N       I  E    S +  
Sbjct: 57  SKDAVSGT------LRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTR 110

Query: 132 KTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLI---GGRETPEGQK-- 186
              E  +++   N    KY +     +L    A+ +L     VLI    G     G K  
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLG----SG-KTW 165

Query: 187 -AIQALKD----------VYAHWV-------PEDRI-ITTNLWS---------------- 211
            A+               ++  W+       PE  + +   L                  
Sbjct: 166 VALDVCLSYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223

Query: 212 ---AELSKLAANAFLAQR-----------ISSVNAMSAL---CE--ATGADVTQVSHAIG 252
                  +      L  +           + +  A +A    C+   T     QV+  + 
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRF-KQVTDFLS 282

Query: 253 KDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVA------------------- 293
             T       + S+        K +L     C    L                       
Sbjct: 283 AATTTHISLDHHSMTLTPD-EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 294 ---NYWKQVIKVNDYQKNRFVNRIVSSMFNTVSG-------KKIAILGFAFKKDT----- 338
              + WK V    +  K   +  I+ S  N +          ++++    F         
Sbjct: 342 ATWDNWKHV----NCDK---LTTIIESSLNVLEPAEYRKMFDRLSV----FPPSAHIPTI 390

Query: 339 -------GDTRETPAIDVC----KGLL---GDKAKLSIYD------PQVTEDQ------I 372
                     +    + V       L+     ++ +SI         ++  +       +
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV 450

Query: 373 QRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAY---------QAAKDAHGVCILTEWD 423
                 K FD D       + PP         D Y         +  +            
Sbjct: 451 DHYNIPKTFDSDD------LIPPY-------LDQYFYSHIGHHLKNIEHPE------RMT 491

Query: 424 EFKT--LDY----QKI-------------------FDNMRKPAYIFDGRNILDVEKLREI 458
            F+   LD+    QKI                       +   YI D     +   +  I
Sbjct: 492 LFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP--YICDNDPKYE-RLVNAI 548

Query: 459 GFIVYSIGKPL--DPWHKDTLAVA 480
              +  I + L     + D L +A
Sbjct: 549 LDFLPKIEENLICSK-YTDLLRIA 571

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} Length = 359

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 16/129 (12%), Positives = 33/129 (25%), Gaps = 35/129 (27%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIE-VAVVDISVSRIAAWNGDQLPIYEPGLEDVVT 59
           ++K+  +G G      +    L+   I  VA  D  + R        +            
Sbjct: 5   LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRV-HRFISDIP-------- 55

Query: 60  QCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKT------QGLGAGK--------AADLTY 105
                      ++   + +  +  V +  P +         +  G          A L  
Sbjct: 56  --------VLDNVPAMLNQVPLDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATL-- 105

Query: 106 WESAARMIA 114
            E    +I 
Sbjct: 106 -EELETLID 113

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A Length = 349

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 26/136 (19%), Positives = 46/136 (33%), Gaps = 31/136 (22%)

Query: 1   MVKICCIGAGYVGGPTMAVIALKCPKIE-VAVVDISVSRIAAWNGDQLPIYEPGLEDVVT 59
            VK+  IG G           +    +E   + D+ V+  AA         E G+     
Sbjct: 2   TVKMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFK-----EKGVN---- 52

Query: 60  QCRGRNLFFSTDIEKHVAEADIVFVSVNTPTKT------QGLGAGKA------ADLTYWE 107
                   F+ D+ + + + +I  +++ TP  T      Q + AGK+         T   
Sbjct: 53  --------FTADLNELLTDPEIELITICTPAHTHYDLAKQAILAGKSVIVEKPFCDTLEH 104

Query: 108 SAARMIANVSNSNKIV 123
            A  + A       +V
Sbjct: 105 -AEELFALGQEKGVVV 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	480
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	100.0
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	100.0
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	100.0
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	100.0
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	100.0
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	100.0
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	100.0
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	100.0
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	100.0
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	100.0
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	100.0
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	100.0
3qha_A	296	Putative oxidoreductase; seattle structural genomi	100.0
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	100.0
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	100.0
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.98
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.97
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.97
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.97
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.97
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.96
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.95
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.94
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.94
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	99.94
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	99.93
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	99.92
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	99.92
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	99.92
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.91
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	99.91
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	99.91
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	99.89
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	99.87
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	99.87
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	99.86
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	99.86
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	99.86
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	99.86
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	99.86
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	99.85
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	99.84
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	99.83
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	99.83
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.78
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	99.76
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	99.75
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	99.73
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	99.73
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	99.72
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	99.71
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	99.71
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	99.71
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	99.71
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	99.7
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	99.7
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	99.68
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.67
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	99.66
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	99.66
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	99.66
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	99.65
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	99.64
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	99.64
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	99.63
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	99.63
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	99.62
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	99.61
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	99.59
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	99.59
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	99.58
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	99.57
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	99.56
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	99.54
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	99.54
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	99.54
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	99.53
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	99.52
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	99.48
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	99.44
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	99.36
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	99.33
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	99.33
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	99.29
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	99.27
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.22
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	99.2
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	99.18
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	99.16
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.16
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.73
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	99.12
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.09
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	99.08
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	99.01
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	99.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	98.99
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	98.96
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	98.94
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	98.94
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	98.94
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	98.93
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	98.91
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	98.91
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	98.89
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	98.89
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	98.87
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	98.86
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	98.85
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	98.83
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	98.83
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	98.82
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	98.82
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	98.81
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	98.81
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	98.81
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	98.8
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	98.8
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	98.79
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	98.79
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	98.79
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.79
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	98.79
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	98.78
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	98.78
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	98.77
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	98.77
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	98.74
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	98.72
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	98.71
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	98.7
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	98.68
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.68
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	98.67
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	98.67
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	98.66
3tl2_A	315	Malate dehydrogenase; center for structural genomi	98.61
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	98.6
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	98.59
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	98.59
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	98.57
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	98.55
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	98.54
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	98.52
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	98.52
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	98.52
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	98.51
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	98.51
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	98.48
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	98.48
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	98.47
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	98.44
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	98.44
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	98.43
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	98.41
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	98.41
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	98.41
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	98.4
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	98.4
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	98.4
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	98.4
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	98.39
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.38
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	98.38
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	98.37
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	98.36
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	98.36
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.35
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	98.35
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	98.32
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	98.3
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	98.29
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	98.29
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	98.29
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	98.29
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.28
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	98.27
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	98.25
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	98.25
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	98.24
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	98.23
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	98.23
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	98.22
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	98.22
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	98.19
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	98.18
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	98.17
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.16
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	98.15
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.14
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	98.14
4had_A	350	Probable oxidoreductase protein; structural genomi	98.12
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	98.11
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	98.11
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	98.09
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	98.09
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	98.08
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	98.08
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	98.07
3c85_A	183	Putative glutathione-regulated potassium-efflux S	98.06
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	98.06
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	98.05
1ydw_A	362	AX110P-like protein; structural genomics, protein	98.05
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	98.05
1o6z_A	303	MDH, malate dehydrogenase; halophilic, ION-binding	98.04
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	98.04
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.01
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	98.0
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	98.0
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	97.99
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	97.96
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	97.96
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	97.94
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.94
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	97.93
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	97.92
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.92
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	97.91
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.9
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	97.89
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	97.88
3u95_A	477	Glycoside hydrolase, family 4; hydrolysis, cytosol	97.84
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.82
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	97.81
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	97.8
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	97.79
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	97.76
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	97.76
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	97.74
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	97.74
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	97.74
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	97.73
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	97.71
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	97.7
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	97.69
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	97.68
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	97.66
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	97.66
4h7p_A	345	Malate dehydrogenase; ssgcid, structural G seattle	97.63
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	97.62
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	97.62
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	97.62
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	97.61
5mdh_A	333	Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH	97.6
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	97.6
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	97.59
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.58
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	97.58
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	97.57
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	97.57
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	97.56
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	97.54
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.53
1hye_A	313	L-lactate/malate dehydrogenase; nucleotide binding	97.52
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	97.51
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.49
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	97.49
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	97.49
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	97.48
4h3v_A	390	Oxidoreductase domain protein; structural genomics	97.45
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	97.44
1up7_A	417	6-phospho-beta-glucosidase; hydrolase, family4 hyd	97.44
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	97.42
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	97.41
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	97.41
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	97.41
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	97.4
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	97.4
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	97.39
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.38
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	97.38
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	97.38
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	97.37
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	97.36
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	97.35
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.34
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	97.33
3qha_A	296	Putative oxidoreductase; seattle structural genomi	97.33
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	97.32
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	97.32
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	97.32
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	97.31
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	97.29
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	97.29
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	97.28
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	97.28
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.27
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	97.26
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	97.26
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	97.25
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	97.23
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	97.23
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.23
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	97.22
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	97.22
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	97.22
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	97.2
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	97.2
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	97.19
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	97.18
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	97.18
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	97.17
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	97.16
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	97.13
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	97.13
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	97.12
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	97.1
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	97.09
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.08
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	97.07
2b0j_A	358	5,10-methenyltetrahydromethanopterin hydrogenase;	97.07
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	97.06
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	97.06
7mdh_A	375	Protein (malate dehydrogenase); chloroplastic mala	97.06
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	97.03
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	97.02
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	97.02
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	97.02
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	97.02
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	97.01
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	96.99
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	96.97
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	96.95
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	96.95
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	96.95
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	96.94
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	96.94
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	96.92
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	96.92
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	96.91
4g65_A	461	TRK system potassium uptake protein TRKA; structur	96.91
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	96.9
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	96.9
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	96.87
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	96.87
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	96.87
4ezb_A	317	Uncharacterized conserved protein; structural geno	96.86
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	96.85
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.84
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	96.83
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	96.81
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	96.8
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	96.79
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	96.79
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	96.77
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.76
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.74
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	96.74
1p9l_A	245	Dihydrodipicolinate reductase; oxidoreductase, lys	96.71
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	96.69
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	96.67
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	96.65
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	96.65
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	96.65
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.62
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	96.61
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	96.61
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	96.6
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	96.6
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	96.6
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	96.57
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.57
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	96.56
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	96.56
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	96.55
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	96.55
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.55
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	96.53
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	96.51
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	96.51
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	96.5
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	96.49
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	96.48
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	96.48
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	96.47
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	96.46
2duw_A	145	Putative COA-binding protein; ligand binding prote	96.45
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	96.44
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	96.43
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	96.42
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.4
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	96.39
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.38
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	96.38
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	96.37
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	96.37
3e48_A	289	Putative nucleoside-diphosphate-sugar epimerase; a	96.32
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	96.31
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	96.3
3l07_A	285	Bifunctional protein fold; structural genomics, ID	96.29
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	96.29
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	96.28
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	96.25
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.23
3m2p_A	311	UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J	96.19
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	96.16
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	96.16
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	96.06
4hb9_A	412	Similarities with probable monooxygenase; flavin,	96.06
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	96.05
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	96.03
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	96.03
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	96.01
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	95.98
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	95.95
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	95.95
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	95.9
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	95.9
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.89
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	95.89
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	95.89
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	95.87
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	95.87
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	95.85
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	95.83
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	95.83
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	95.83
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	95.83
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	95.83
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	95.82
2jl1_A	287	Triphenylmethane reductase; oxidoreductase, biorem	95.81
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.8
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	95.79
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	95.76
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.75
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	95.74
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	95.74
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	95.7
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	95.7
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	95.69
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	95.68
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	95.67
1xq6_A	253	Unknown protein; structural genomics, protein stru	95.63
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	95.63
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	95.63
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	95.6
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	95.6
1lnq_A	336	MTHK channels, potassium channel related protein;	95.59
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	95.59
2x4g_A	342	Nucleoside-diphosphate-sugar epimerase; isomerase;	95.58
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	95.57
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.57
3c1o_A	321	Eugenol synthase; phenylpropene, PIP reductase, sh	95.56
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	95.55
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	95.47
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	95.41
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	95.38
2r00_A	336	Aspartate-semialdehyde dehydrogenase; conformation	95.37
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	95.35
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	95.32
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	95.31
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.3
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	95.29
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.29
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	95.27
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	95.27
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	95.27
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	95.24
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	95.23
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	95.22
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	95.2
3l07_A	285	Bifunctional protein fold; structural genomics, ID	95.15
3h2z_A	382	Mannitol-1-phosphate 5-dehydrogenase; PSI- protein	95.14
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	95.14
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	95.14
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	95.08
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	95.05
4dpl_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	95.05
4dpk_A	359	Malonyl-COA/succinyl-COA reductase; dinucleotide b	95.05
1orr_A	347	CDP-tyvelose-2-epimerase; rossmann fold, short-cha	95.03
2r6j_A	318	Eugenol synthase 1; phenylpropene, PIP reductase,	95.02
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	94.99
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.96
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	94.96
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	94.94
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	94.94
2zcu_A	286	Uncharacterized oxidoreductase YTFG; alpha-beta sa	94.93
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	94.91
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	94.9
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	94.88
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	94.87
3oh8_A	516	Nucleoside-diphosphate sugar epimerase (SULA FAMI;	94.84
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	94.84
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	94.82
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	94.81
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	94.74
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	94.73
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	94.71
3st7_A	369	Capsular polysaccharide synthesis enzyme CAP5F; ro	94.71
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	94.71
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	94.69
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.67
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	94.63
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	94.63
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	94.61
3ing_A	325	Homoserine dehydrogenase; NP_394635.1, structural	94.61
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.61
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	94.6
2c5a_A	379	GDP-mannose-3', 5'-epimerase; short chain dehydrat	94.57

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=100.00  E-value=3.1e-94  Score=741.59  Aligned_cols=418  Identities=34%  Similarity=0.546  Sum_probs=384.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~a   79 (480)
                      |.+|+|||+||||+++|..|+++  ||+|+|+|+|+++++.|++|+.|++||++++++.+ +..+++++|+++++++++|
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~--G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~a   98 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALL--GHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAAT   98 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTS
T ss_pred             CCEEEEEccCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcC
Confidence            56899999999999999999998  99999999999999999999999999999999875 5678999999999999999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCC---CCCEEEEecCCccchHHHH-HHHHHhcCCCCceeEeeC
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSN---SNKIVVEKSTVPVKTAEAI-EKILTHNSREIKYQILSN  155 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~---~~~iVi~~STv~~gt~~~l-~~~l~~~~~g~~~~v~~~  155 (480)
                      |++|||||||.+.++     .+|+++++++.+.|+++++   ++++||++||++|||++++ .+++++.+++.+|.++|+
T Consensus        99 d~~~I~VpTP~~~d~-----~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~  173 (444)
T 3vtf_A           99 DATFIAVGTPPAPDG-----SADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASN  173 (444)
T ss_dssp             SEEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEEC
T ss_pred             CceEEEecCCCCCCC-----CCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecC
Confidence            999999999988754     8999999999999999885   5789999999999999985 566776655789999999


Q ss_pred             CccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHH
Q 011654          156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSA  235 (480)
Q Consensus       156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~  235 (480)
                      |||+.||++++++.+|+|||+|+.    ++++.+.+.++|+.+.  .+++++++++||++|+++|+|++++|+|+||++.
T Consensus       174 PErl~eG~a~~d~~~~~riViG~~----~~~a~~~~~~ly~~~~--~~~~~~~~~~AE~~Kl~eN~~ravnIa~~NEla~  247 (444)
T 3vtf_A          174 PEFLREGSALEDFFKPDRIVIGAG----DERAASFLLDVYKAVD--APKLVMKPREAELVKYASNVFLALKISFANEVGL  247 (444)
T ss_dssp             CCCCCTTSHHHHHHSCSCEEEEES----SHHHHHHHHHHTTTSC--SCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCccccccccCCcEEEcCC----CHHHHHHHHHHHhccC--CCEEEechhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999986    5788999999999874  4677889999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHH
Q 011654          236 LCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIV  315 (480)
Q Consensus       236 l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~  315 (480)
                      +|+++|+|+++|++++++++|+|+++++||+||||||||||+++|.+.|+++|++  .+++++++++|++||+++++++.
T Consensus       248 ice~~GiDv~eV~~a~~~d~rig~~~l~PG~G~GG~CipkD~~~L~~~a~~~g~~--~~li~a~~~iN~~~~~~vv~~l~  325 (444)
T 3vtf_A          248 LAKRLGVDTYRVFEAVGLDKRIGRHYFGAGLGFGGSCFPKDTLAFIRFGESLGLE--MAISKAVLRVNEYMPRYAVQLLE  325 (444)
T ss_dssp             HHHHTTCCHHHHHHHHHTSTTSCSTTCCCSSCCCTTTHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHhccCCCCCCCCCCCCCCCCCcccCcCHHHHHHHHHhcCCC--HHHHHhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998  78999999999999999999998


Q ss_pred             HHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCC
Q 011654          316 SSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPP  395 (480)
Q Consensus       316 ~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (480)
                      +.+ +.++++||+|||+|||+||+|+||||++.|++.|.++|++|.+|||++.++.. ..++                  
T Consensus       326 ~~~-~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~-~~~~------------------  385 (444)
T 3vtf_A          326 ERL-GGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKAR-AVLG------------------  385 (444)
T ss_dssp             HHH-TCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHH-HHHG------------------
T ss_pred             HHc-cccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHH-HhcC------------------
Confidence            876 57899999999999999999999999999999999999999999999965443 2232                  


Q ss_pred             CCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCcEEEEecC
Q 011654          396 ASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGK  467 (480)
Q Consensus       396 ~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~  467 (480)
                        ..+++++++++++++||+|||+|+|++|+++||       +.+ +|||+||++++++    .+.|.|||+
T Consensus       386 --~~~~~~~~~~~a~~~aDavvi~t~h~ef~~ld~-------~~~-vv~D~Rni~~~~~----~~~y~gigW  443 (444)
T 3vtf_A          386 --DSVTYVEDPQALLDQVEGVIIATAWPQYEGLDY-------RGK-VVVDGRYVKKARE----AKIYEGVAW  443 (444)
T ss_dssp             --GGSEECSCHHHHHHHCSEEEECSCCGGGGGSCC-------TTC-EEEESSCCGGGGG----SSEEEESSC
T ss_pred             --CCceecCCHHHHHhCCCEEEEccCCHHHhCCCc-------CCC-EEEECCCCCChhh----hcceeeeec
Confidence              347788999999999999999999999999986       345 9999999999764    458999996

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=100.00  E-value=1.5e-92  Score=735.71  Aligned_cols=433  Identities=37%  Similarity=0.622  Sum_probs=396.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|+|||+||||++||.+|+++  ||+|++||+++++++.++++++|++||++++++.+ ...+++++|+|+++++++||
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~--G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aD   86 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDF--GHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDAD   86 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCS
T ss_pred             eEEEEEcCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCC
Confidence            4799999999999999999998  99999999999999999999999999999998865 35678999999999899999


Q ss_pred             EEEEeccCCCCc-CCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           81 IVFVSVNTPTKT-QGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        81 vVii~Vptp~~~-~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      +||+|||||.+. ++     .+|++++++++++|.++++++++||++||++|||++++.+.+++.+.+.+|.++++|||+
T Consensus        87 vvii~Vptp~~~~~~-----~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~~d~~v~~~Pe~a  161 (446)
T 4a7p_A           87 AVFIAVGTPSRRGDG-----HADLSYVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGAKVVSNPEFL  161 (446)
T ss_dssp             EEEECCCCCBCTTTC-----CBCTHHHHHHHHHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTTSCCEEEECCCCC
T ss_pred             EEEEEcCCCCccccC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCCCCceEEeCcccc
Confidence            999999999754 33     899999999999999999999999999999999999998888776544689999999999


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCC--eEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPED--RIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~--~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      .+|.+++++.+|++||+|+.    ++++.+.++++|+.+.+..  +++.+++++||++|+++|++++++|+++||++.+|
T Consensus       162 ~eG~a~~d~~~p~~ivvG~~----~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~  237 (446)
T 4a7p_A          162 REGAAIEDFKRPDRVVVGTE----DEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLC  237 (446)
T ss_dssp             CTTSHHHHHHSCSCEEEECS----CHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhccCCCEEEEeCC----cHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999986    4789999999999986422  47788999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011654          238 EATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSS  317 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~  317 (480)
                      +++|+|+++|+++++++||+|+++++||+||||+|+|||++++.+.|++.|++  .+++++++++|++||.++++++.+.
T Consensus       238 ~~~GiD~~~v~~~~~~~~rig~~~l~pg~G~gg~c~~KD~~~l~~~A~~~g~~--~~l~~~~~~iN~~~~~~~~~~i~~~  315 (446)
T 4a7p_A          238 EQVGADVQEVSRGIGMDNRIGGKFLHAGPGYGGSCFPKDTLALMKTAADNETP--LRIVEATVQVNDARKRAMGRKVIKA  315 (446)
T ss_dssp             HHTTCCHHHHHHHHHTSTTC---CCCCCSCCCTTTHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHhcCCCCCCccCCCCCCcchhhHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999  8999999999999999999999999


Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      +++.++++||+|||+|||+||+|+||||++.|++.|+++|++|.+|||++.++. ...                     +
T Consensus       316 l~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~-~~~---------------------~  373 (446)
T 4a7p_A          316 MGGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQA-SKM---------------------L  373 (446)
T ss_dssp             TTSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHH-GGG---------------------C
T ss_pred             hcccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhH-HHh---------------------c
Confidence            988899999999999999999999999999999999999999999999996432 221                     1


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLD  470 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~  470 (480)
                      +++.+++++++++++||+|||+|+|++|+++||+.+.+.|+.| +|||+||+++++++++.||.|+||||+.+
T Consensus       374 ~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~-~i~D~r~~~~~~~~~~~g~~y~~iG~~~~  445 (446)
T 4a7p_A          374 TDVEFVENPYAAADGADALVIVTEWDAFRALDLTRIKNSLKSP-VLVDLRNIYPPAELERAGLQYTGVGKPSR  445 (446)
T ss_dssp             SSCCBCSCHHHHHTTBSEEEECSCCTTTTSCCHHHHHTTBSSC-BEECSSCCSCHHHHHHTTCBCCCSSCC--
T ss_pred             CCceEecChhHHhcCCCEEEEeeCCHHhhcCCHHHHHHhcCCC-EEEECCCCCCHHHHHhcCCEEEEecCCCC
Confidence            3467788999999999999999999999999999999999887 89999999999999999999999999743

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=100.00  E-value=2.5e-88  Score=707.49  Aligned_cols=432  Identities=36%  Similarity=0.621  Sum_probs=392.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|+||+++|..|+++  |++|++||+++++++.++++..+++|+++++++.+ ...+++++++|+++++++||
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~--G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aD   80 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAEL--GANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEAD   80 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCC
Confidence            7999999999999999999998  99999999999999999999999999999988753 33578999999999899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCC----CCceeEeeCC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR----EIKYQILSNP  156 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~----g~~~~v~~~P  156 (480)
                      +||+|||||.+.++     .+|++++++++++|.++++++++||++||++|+|++++.+.+++...    +.+|.++++|
T Consensus        81 vViiaVptp~~~~~-----~~dl~~v~~v~~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~P  155 (450)
T 3gg2_A           81 IIFIAVGTPAGEDG-----SADMSYVLDAARSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNP  155 (450)
T ss_dssp             EEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECC
T ss_pred             EEEEEcCCCcccCC-----CcChHHHHHHHHHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEech
Confidence            99999999986643     89999999999999999999999999999999999999888776431    3679999999


Q ss_pred             ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCC-CeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHH
Q 011654          157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPE-DRIITTNLWSAELSKLAANAFLAQRISSVNAMSA  235 (480)
Q Consensus       157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~-~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~  235 (480)
                      |++.+|.+.+++.+|+++++|+.    ++++.+.++++|+.+.+. .+++.+++++||++|+++|++++++++++||++.
T Consensus       156 e~a~eG~~~~~~~~p~~ivvG~~----~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~  231 (450)
T 3gg2_A          156 EFLKEGNAIDDFMKPDRVVVGVD----SDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVAN  231 (450)
T ss_dssp             CCCCTTSHHHHHHSCSCEEEEES----SHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccchhhhccCCCEEEEEcC----CHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999986    488999999999988642 2577899999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHH
Q 011654          236 LCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIV  315 (480)
Q Consensus       236 l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~  315 (480)
                      +|+++|+|+++|+++++++||+++++++||+||||+|+|||++++.+.|+++|++  .+++++++++|+.||.++++++.
T Consensus       232 l~~~~Gid~~~v~~~~~~~~rig~~~~~pg~G~gg~c~~KD~~~l~~~a~~~g~~--~~l~~~~~~iN~~~~~~~~~~~~  309 (450)
T 3gg2_A          232 LCERVGADVSMVRLGIGSDSRIGSKFLYPGCGYGGSCFPKDVKALIRTAEDNGYR--MEVLEAVERVNEKQKSILFDKFS  309 (450)
T ss_dssp             HHHHHTCCHHHHHHHHHTSTTTCSSSCCCSSCCCSSHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHcCCCCCCcccCCCCCCCCcccHHhhHHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999  89999999999999999999999


Q ss_pred             HHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCC
Q 011654          316 SSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPP  395 (480)
Q Consensus       316 ~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (480)
                      +.+++.++++||+|||+|||+||+|+||||++.|++.|+++|++|.+|||++.++. ...++                  
T Consensus       310 ~~~~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~-~~~~~------------------  370 (450)
T 3gg2_A          310 TYYKGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEA-QKRLG------------------  370 (450)
T ss_dssp             HHTTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHH-HHHHG------------------
T ss_pred             HHhcccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHH-HHhcC------------------
Confidence            99987899999999999999999999999999999999999999999999997532 22232                  


Q ss_pred             CCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCC
Q 011654          396 ASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLD  470 (480)
Q Consensus       396 ~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~  470 (480)
                        ..+.+++++++++++||+|||+|+|++|+++||+.+.+.|+.| +|||+||+++++  ++.||.|+||||++.
T Consensus       371 --~~~~~~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~-~i~D~r~~~~~~--~~~g~~y~~ig~~~~  440 (450)
T 3gg2_A          371 --DKVEYTTDMYDAVRGAEALFHVTEWKEFRMPDWSALSQAMAAS-LVIDGRNVYELP--ADSDFTLLNIGNSAI  440 (450)
T ss_dssp             --GGSEECSSHHHHTTTCSCEEECSCCGGGSSCCHHHHHHHSSSC-EEEESSCCCCCC------CEEEECC----
T ss_pred             --ccceecCCHHHHhcCCCEEEEccCCHHHhhcCHHHHHHhcCCC-EEEECCCCCChH--HhCCCEEEEeccccc
Confidence              2367888999999999999999999999999999999999987 899999999988  789999999999764

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=100.00  E-value=2.3e-88  Score=707.86  Aligned_cols=434  Identities=25%  Similarity=0.388  Sum_probs=391.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHH----HHHHHHCCCCCC--CCCChHHHHHh-hcCCCEEEecCH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVS----RIAAWNGDQLPI--YEPGLEDVVTQ-CRGRNLFFSTDI   72 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~----~v~~l~~~~~~~--~e~~l~~l~~~-~~~~~l~~t~d~   72 (480)
                      ||||+|||+|+||+++|..|+++ +|| +|++||++++    +++.++++..++  +|+++++++.+ ...+++++|++ 
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~-~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-   95 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADA-PCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-   95 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHS-TTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-
T ss_pred             CCEEEEECcCHHHHHHHHHHHHh-CCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-
Confidence            58999999999999999999986 479 9999999999    999999999999  89999988764 33578999999 


Q ss_pred             HHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHH-HHHh-cCC--CC
Q 011654           73 EKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEK-ILTH-NSR--EI  148 (480)
Q Consensus        73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~-~l~~-~~~--g~  148 (480)
                      .+++++||+||+|||||.+.++   ...+|+++++++.++|.++++++++||++||++|||++++.+ ++++ .+.  +.
T Consensus        96 ~ea~~~aDvViiaVptp~~~~~---~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~~  172 (478)
T 3g79_A           96 FSRISELDAVTLAIQTPFANPK---DLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGE  172 (478)
T ss_dssp             GGGGGGCSEEEECCCCCCCSSC---CSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBTT
T ss_pred             HHHHhcCCEEEEecCCchhccC---CccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcCC
Confidence            5679999999999999986533   112899999999999999999999999999999999999875 5633 332  46


Q ss_pred             ceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhcc-CCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654          149 KYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHW-VPEDRIITTNLWSAELSKLAANAFLAQRI  227 (480)
Q Consensus       149 ~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i  227 (480)
                      +|.++++|||+.+|.+..++.+|++||+|++     ++..++++++|+.+ .. .+++.+++++||++|+++|++++++|
T Consensus       173 d~~v~~~Pe~~~~G~a~~~~~~~~~Iv~G~~-----~~~~~~~~~ly~~~~~~-~~~~~~~~~~aE~~Kl~~N~~~a~~I  246 (478)
T 3g79_A          173 DFALAHAPERVMVGRLLKNIREHDRIVGGID-----EASTKRAVELYSPVLTV-GQVIPMSATAAEVTKTAENTFRDLQI  246 (478)
T ss_dssp             TBEEEECCCCCCTTSHHHHHHHSCEEEEESS-----HHHHHHHHHHHGGGCSS-CCEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeEEeCCccCCccchhhhhcCCcEEEEeCC-----HHHHHHHHHHHhhhccC-CeEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999989999987764     77889999999998 53 57888999999999999999999999


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhcCCC--CCCCccccCCCCCcccchhhhHHHHHHHHHHcCCc----h-hhhHHHHHH
Q 011654          228 SSVNAMSALCEATGADVTQVSHAIGKDT--RIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLT----E-VANYWKQVI  300 (480)
Q Consensus       228 a~~nE~~~l~~~~Gid~~~v~~~~~~~~--~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~----~-~~~~~~~~~  300 (480)
                      +++||++.+|+++|+|+++|+++++++|  |++.++++||+||||+|+|||++++.+.|++.|++    + ..+++++++
T Consensus       247 a~~nE~~~l~e~~GiD~~~v~~~~~~~~~~ri~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~~~~~~~li~~~~  326 (478)
T 3g79_A          247 AAINQLALYCEAMGINVYDVRTGVDSLKGEGITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVLAR  326 (478)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHTSCCSSSCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCCCSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHCCCchhhhccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCcccccchhHHHHHHH
Confidence            9999999999999999999999999999  88899999999999999999999999999999965    1 258999999


Q ss_pred             HHHHHhHHHHHHHHHHHhcC---cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhh
Q 011654          301 KVNDYQKNRFVNRIVSSMFN---TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLS  377 (480)
Q Consensus       301 ~~N~~~~~~~~~~~~~~l~~---~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~  377 (480)
                      ++|+.||.++++++.+.+.+   .++++||+|||+|||+||+|+||||++.|++.|+++|++|.+|||++..      + 
T Consensus       327 ~iN~~~~~~~~~~i~~~l~~~~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~------~-  399 (478)
T 3g79_A          327 KVNDFMPAHMYNLTVAALERLGKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVN------Y-  399 (478)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCC------B-
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCccc------c-
Confidence            99999999999999988743   6899999999999999999999999999999999999999999999972      1 


Q ss_pred             ccccCCCCCCCCCCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcC--CCCEEEEcCCCCChHHH
Q 011654          378 MKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMR--KPAYIFDGRNILDVEKL  455 (480)
Q Consensus       378 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~--~~~~i~D~~~~~~~~~~  455 (480)
                                          +.+.++.++++++++||+||++|+|++|+++||+.+.+.|+  .| +|||+||+++++++
T Consensus       400 --------------------~~~~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~~~~~~~~~~~~~-~i~D~rn~~~~~~~  458 (478)
T 3g79_A          400 --------------------PGVEISDNLEEVVRNADAIVVLAGHSAYSSLKADWAKKVSAKANP-VIIDGRNVIEPDEF  458 (478)
T ss_dssp             --------------------TTBCEESCHHHHHTTCSEEEECSCCHHHHSCCHHHHHHHHCCSSC-EEEESSSCSCHHHH
T ss_pred             --------------------cCcceecCHHHHHhcCCEEEEecCCHHHHhhhHHHHHHHhccCCC-EEEECCCCCCHHHH
Confidence                                12456789999999999999999999999999999999998  55 99999999999999


Q ss_pred             hhcCcEEEEecCCCCcCc
Q 011654          456 REIGFIVYSIGKPLDPWH  473 (480)
Q Consensus       456 ~~~g~~y~~iG~~~~~~~  473 (480)
                      ++.||.|+||||....-|
T Consensus       459 ~~~g~~y~~ig~~~~~~~  476 (478)
T 3g79_A          459 IGKGFVYKGIGREGHHHH  476 (478)
T ss_dssp             HTTTCEEEETTCTTTTTC
T ss_pred             HhcCCEEEEecccCcccC
Confidence            999999999999665444

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=100.00  E-value=8.4e-88  Score=695.23  Aligned_cols=410  Identities=27%  Similarity=0.418  Sum_probs=364.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .|..|||+||||++||.+|+++  ||+|++||+|+++++.|++++.|++||++++++.+ ...+++++|+|+    ++||
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~--G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~----~~aD   85 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKH--GVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTP----EASD   85 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSC----CCCS
T ss_pred             CccEEEeeCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCch----hhCC
Confidence            4789999999999999999998  99999999999999999999999999999999865 446889999983    5799


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHH-HHhcCC--CCceeEeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKI-LTHNSR--EIKYQILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~-l~~~~~--g~~~~v~~~Pe  157 (480)
                      +||+|||||.+.+.   ...+|+++++++.++|.++++++++||++||++|||++++.+. +++.+.  +.+|.++++||
T Consensus        86 vvii~VpTp~~~~~---~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe  162 (431)
T 3ojo_A           86 VFIIAVPTPNNDDQ---YRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPE  162 (431)
T ss_dssp             EEEECCCCCBCSSS---SCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCC
T ss_pred             EEEEEeCCCccccc---cCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCC
Confidence            99999999986530   1389999999999999999999999999999999999998665 453332  57899999999


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      |+.+|.+..++.+|++||+|++     +++.++++++|+.+.+ ..++.+++++||++|+++|+|++++|+++||++.+|
T Consensus       163 ~~~~G~A~~~~~~p~~Iv~G~~-----~~~~~~~~~ly~~~~~-~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~  236 (431)
T 3ojo_A          163 RVLPGKILEELVHNNRIIGGVT-----KACIEAGKRVYRTFVQ-GEMIETDARTAEMSKLMENTYRDVNIALANELTKIC  236 (431)
T ss_dssp             CCCTTSHHHHHHHSCEEEEESS-----HHHHHHHHHHHTTTCC-SCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcchhhcccCCCEEEEeCC-----HHHHHHHHHHHHHHhC-CcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999987764     7899999999999874 467789999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011654          238 EATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSS  317 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~  317 (480)
                      +++|+|+++|+++++++||+  ++++||+||||||||||+++|.+.|++.|     +++++++++|+.||.++++++.+.
T Consensus       237 e~~GiD~~~v~~~~~~~~ri--~~l~pG~G~GG~C~pkD~~~L~~~a~~~~-----~li~~~~~iN~~~~~~v~~~~~~~  309 (431)
T 3ojo_A          237 NNLNINVLDVIEMANKHPRV--NIHQPGPGVGGHCLAVDPYFIIAKDPENA-----KLIQTGREINNSMPAYVVDTTKQI  309 (431)
T ss_dssp             HHTTCCHHHHHHHHTTSTTC--CCCCCCSCCCCCCBCSCC---------CC-----HHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHccCCCc--ccCCCCCCccccchhhhHHHHHHHHHHHh-----HHHHHHHHHHHHhHHHHHHHHHHH
Confidence            99999999999999999987  68999999999999999999999999876     789999999999999999999988


Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhC-CCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGD-KAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPA  396 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~-g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (480)
                      + +.++++||+|||+|||+||+|+||||++.|++.|+++ |++|.+|||++..+                          
T Consensus       310 l-~~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~--------------------------  362 (431)
T 3ojo_A          310 I-KALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD--------------------------  362 (431)
T ss_dssp             H-HHSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT--------------------------
T ss_pred             h-hhcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc--------------------------
Confidence            7 4689999999999999999999999999999999999 99999999999752                          


Q ss_pred             CCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCC
Q 011654          397 SKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPL  469 (480)
Q Consensus       397 ~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~  469 (480)
                          .+..++++++++||+|||+|+|++|+++||+.+ +.|+.+ +|||+||++++   +..||.|++|||-.
T Consensus       363 ----~~~~~~~~~~~~ad~vvi~t~~~~f~~~d~~~~-~~~~~~-~i~D~r~~~~~---~~~~~~y~~ig~~~  426 (431)
T 3ojo_A          363 ----FVEHDMSHAVKDASLVLILSDHSEFKNLSDSHF-DKMKHK-VIFDTKNVVKS---SFEDVLYYNYGNIF  426 (431)
T ss_dssp             ----TBCSTTHHHHTTCSEEEECSCCGGGTSCCGGGG-TTCSSC-EEEESSCCCCS---CCSSSEEEETTTGG
T ss_pred             ----cccCCHHHHHhCCCEEEEecCCHHHhccCHHHH-HhCCCC-EEEECCCCCCc---hhcCeEEEeeCchh
Confidence                124578999999999999999999999999998 788876 99999999975   46899999999864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=100.00  E-value=1.4e-85  Score=693.39  Aligned_cols=462  Identities=58%  Similarity=0.996  Sum_probs=405.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ||||+|||+|+||+++|..|+++++|++|++||+++++++.++++..+++++++++++.....+++++++++.+++++||
T Consensus         9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aD   88 (481)
T 2o3j_A            9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEAD   88 (481)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCC
Confidence            47999999999999999999987557999999999999999999999999999988876433457999999988899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHh-cC--CCCceeEeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTH-NS--REIKYQILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~-~~--~g~~~~v~~~Pe  157 (480)
                      +||+|||||.+.++.+.+..+|++++++++++|.++++++++||++||++||+++.+.+.+++ .+  .+.+|.++++||
T Consensus        89 vvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~~~Pe  168 (481)
T 2o3j_A           89 LIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPE  168 (481)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEEECCC
T ss_pred             EEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEEeCcc
Confidence            999999999754322223478999999999999999999999999999999999999988887 43  146788999999


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      ++.+|.+.+++.+++++++|+.++.+++++.+.++++|+.+.....++.++++++|++|+++|++++++++++||++.+|
T Consensus       169 ~~~~G~a~~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE~~~la  248 (481)
T 2o3j_A          169 FLAEGTAMKDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVC  248 (481)
T ss_dssp             CCCTTCHHHHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccchhhcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888889899999874433346888999999998631467888999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011654          238 EATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSS  317 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~  317 (480)
                      +++|+|+++++++++++||++.+++.||+||||+|+|||++++.+.|++.|+++.++++++++++|++||.++++++.+.
T Consensus       249 ~~~Gid~~~v~~~~~~~~ri~~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~~~~~l~~~~~~~N~~~~~~~~~~~~~~  328 (481)
T 2o3j_A          249 EATGAEISEVAHAVGYDTRIGSKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININNWQRRRFADKIIAE  328 (481)
T ss_dssp             HHHSCCHHHHHHHHHTSTTTCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCcCHHHHHHHHccCCCCCCCCCCCCCccCCccHHHHHHHHHHHHHHcCCCccchHHHHHHHHHHhhHHHHHHHHHHh
Confidence            99999999999999999999888999999999999999999999999999998767899999999999999999999999


Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      +++.+++++|+|||+|||+||+|+||||++.|++.|.++|++|.+|||+++.++...++..  .+..++         ..
T Consensus       329 l~~~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~--~~~~~~---------~~  397 (481)
T 2o3j_A          329 LFNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLAS--VTSAQD---------VE  397 (481)
T ss_dssp             TTTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHH--HSCHHH---------HH
T ss_pred             hccccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHh--hhcccc---------cc
Confidence            8777899999999999999999999999999999999999999999999986543222210  000000         00


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCCcCc
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWH  473 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~~~~  473 (480)
                      +.+++++++++++++||+|||+|+|++|+++||+++.+.|+.+.+|||+||+++++++++.||.|+||||+.++=|
T Consensus       398 ~~~~~~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~~~~~~~~~g~~~~~iG~~~~~~~  473 (481)
T 2o3j_A          398 RLITVESDPYAAARGAHAIVVLTEWDEFVELNYSQIHNDMQHPAAIFDGRLILDQKALREIGFRTFAIGTSPDQAY  473 (481)
T ss_dssp             HHEEEESSHHHHHTTCSEEEECSCCGGGTTSCHHHHHHHSCSSCEEEESSSCSCHHHHHHHTCEEEETTSCSCC--
T ss_pred             CceeecCCHHHHHcCCCEEEEcCCcHHhhccCHHHHHHhcCCCCEEEECCCCCCHHHHHhcCcEEEEecCcccccC
Confidence            1356778999999999999999999999999999999999988789999999999999999999999999877654

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=100.00  E-value=1.8e-82  Score=668.36  Aligned_cols=459  Identities=64%  Similarity=1.045  Sum_probs=402.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ||||+|||+|+||+++|..|+++++|++|++||+++++++.++++..+++++++++++......++++++++++++++||
T Consensus         5 ~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aD   84 (467)
T 2q3e_A            5 IKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEAD   84 (467)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCS
T ss_pred             ccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCC
Confidence            57999999999999999999987457999999999999999999999999999988875433356899999988899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCC-CCceeEeeCCccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR-EIKYQILSNPEFL  159 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~-g~~~~v~~~Pe~~  159 (480)
                      +||+|||+|.+.++...+..+|++++.++++++.++++++++||++||++|++++.+.+.+++.+. +.++.+.++|+++
T Consensus        85 vViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe~~  164 (467)
T 2q3e_A           85 LVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFL  164 (467)
T ss_dssp             EEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCCCC
T ss_pred             EEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHHHh
Confidence            999999999764221111368999999999999999999999999999999999999888887543 5678999999999


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHH
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEA  239 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~  239 (480)
                      .+|.+.+++.+++++++|+..+..++++.+.++++|+.+....+++.+++++||++|+++|++++++++++||++.+|++
T Consensus       165 ~~G~~~~d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~  244 (467)
T 2q3e_A          165 AEGTAIKDLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEA  244 (467)
T ss_dssp             CTTSHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccchhhccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999983222257889999999999832246888999999999999999999999999999999999


Q ss_pred             hCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHHhc
Q 011654          240 TGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMF  319 (480)
Q Consensus       240 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~  319 (480)
                      +|+|++++++++++++++++.+++||+||||+|+|||++++++.|++.|+++..++++++.++|++|+.++++++.+.+.
T Consensus       245 ~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~c~~kD~~~l~~~a~~~g~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~  324 (467)
T 2q3e_A          245 TGADVEEVATAIGMDQRIGNKFLKASVGFGGSCFQKDVLNLVYLCEALNLPEVARYWQQVIDMNDYQRRRFASRIIDSLF  324 (467)
T ss_dssp             HTCCHHHHHHHHHTSTTTCSSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             hCcCHHHHHHHHcCCCCCCccccCCCCCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Confidence            99999999999999999888899999999999999999999999999999877789999999999999999999999876


Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      +.++++||+|||+|||+||+|+||||++.|++.|.++|++|.+|||++..++....+.       ++..+.|  ....++
T Consensus       325 ~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~-------~~~~~~~--~~~~~~  395 (467)
T 2q3e_A          325 NTVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLS-------HPGVSED--DQVSRL  395 (467)
T ss_dssp             TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHC-------C--------CHHHHH
T ss_pred             cccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhc-------ccccccc--ccccCc
Confidence            6789999999999999999999999999999999999999999999998776544321       0000000  000125


Q ss_pred             eeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCCh--HHHhhcCcEEEEecCC
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDV--EKLREIGFIVYSIGKP  468 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~--~~~~~~g~~y~~iG~~  468 (480)
                      +.+++++++++++||+|||+|+|++|+++||+++...|+.|.+|||+||++++  ++++..||.|+||||+
T Consensus       396 ~~~~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~~~i~D~r~~~~~~~~~~~~~g~~~~~ig~~  466 (467)
T 2q3e_A          396 VTISKDPYEACDGAHAVVICTEWDMFKELDYERIHKKMLKPAFIFDGRRVLDGLHNELQTIGFQIETIGKK  466 (467)
T ss_dssp             EEECSSHHHHHTTCSEEEECSCCGGGGGSCHHHHHHHSCSSCEEEESSCTTTTCHHHHHHHTCEEEETTSC
T ss_pred             eeecCCHHHHHhCCcEEEEecCChhhhcCCHHHHHHhcCCCCEEEeCCCcCCchHHHHHhcCcEEEEeCCC
Confidence            77888999999999999999999999999999999999988669999999998  8999999999999985

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=100.00  E-value=4.6e-83  Score=672.54  Aligned_cols=451  Identities=37%  Similarity=0.595  Sum_probs=400.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|+||+++|..|+++  ||+|++||+++++++.+++++.+++++++++++.+ ...+++++++|+++++++||
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~--G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aD   86 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADI--GHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGD   86 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCS
T ss_pred             ceEEEECcCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCC
Confidence            8999999999999999999998  99999999999999999999999999999887653 33567999999988899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC-CC---CceeEeeCC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS-RE---IKYQILSNP  156 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~-~g---~~~~v~~~P  156 (480)
                      +||+|||||.+.++     .+|++++++++++|.++++++++||++||++||+++.+.+.+++.. .+   .+|.++++|
T Consensus        87 vviiaVptp~~~~~-----~~dl~~v~~v~~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g~~~~~~~v~~~P  161 (478)
T 2y0c_A           87 VQFIAVGTPPDEDG-----SADLQYVLAAARNIGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKRGGDQMFSVVSNP  161 (478)
T ss_dssp             EEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECC
T ss_pred             EEEEEeCCCcccCC-----CccHHHHHHHHHHHHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCCCCCccEEEEECh
Confidence            99999999987644     8999999999999999999999999999999999999888877641 12   578999999


Q ss_pred             ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCC-CCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHH
Q 011654          157 EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVP-EDRIITTNLWSAELSKLAANAFLAQRISSVNAMSA  235 (480)
Q Consensus       157 e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~-~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~  235 (480)
                      |++.||.+.+++..|+++++|+.++....++.+.++++|+.+.+ ...++.+++++||+.|+++|++++++++++||++.
T Consensus       162 e~~~eG~~~~~~~~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~  241 (478)
T 2y0c_A          162 EFLKEGAAVDDFTRPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELAN  241 (478)
T ss_dssp             CCCCTTCHHHHHHSCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccceeeccCCCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999888889999998875210001788999999998752 24678889999999999999999999999999999


Q ss_pred             HHHHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHH
Q 011654          236 LCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIV  315 (480)
Q Consensus       236 l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~  315 (480)
                      +|+++|+|+++++++++.++|++..+++||+|+||+|++||+.++.+.|+++|++  .++++++.++|+.||.++++++.
T Consensus       242 la~~~Gid~~~v~~~i~~~~rig~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~--~pl~~~v~~in~~~~~~~~~~~~  319 (478)
T 2y0c_A          242 LADRFGADIEAVRRGIGSDPRIGYHFLYAGCGYGGSCFPKDVEALIRTADEHGQS--LQILKAVSSVNATQKRVLADKIV  319 (478)
T ss_dssp             HHHHTTCCHHHHHHHHHTSTTTCSTTCCCSSCCCSSSHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHhcCCccCcccCCCCcccccCcCHHHHHHHHHHHHHcCCC--cHHHHHHHHHHHHhHHHHHHHHH
Confidence            9999999999999999999999888899999999999999999999999999999  89999999999999999999999


Q ss_pred             HHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCC
Q 011654          316 SSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPP  395 (480)
Q Consensus       316 ~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (480)
                      +.+++.+++++|+|||||||+||+|+||||++.|++.|+++|++|.+|||++.++ ....|+.  -.|+.|  |      
T Consensus       320 ~~~~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~-~~~~~~~--~~~~~~--~------  388 (478)
T 2y0c_A          320 ARFGEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEE-ARRVIAL--DLADHP--S------  388 (478)
T ss_dssp             HHHCSCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHH-HHHHHHH--HTTTCH--H------
T ss_pred             HHhcccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHH-HHHhhcc--cccccc--c------
Confidence            9987788999999999999999999999999999999999999999999998653 2222210  001111  1      


Q ss_pred             CCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCcEEEEecCCCCcCc
Q 011654          396 ASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGKPLDPWH  473 (480)
Q Consensus       396 ~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~~~~~~~  473 (480)
                      ..+.+.+++++++++++||+|||+|+|++|+++||+.+.+.|+.+ +|||+||+++++.+++.||.|+||||+...|.
T Consensus       389 ~~~~~~~~~~~~~~~~~ad~~vi~t~~~~f~~~~~~~~~~~~~~~-~i~D~r~~~~~~~~~~~g~~y~~ig~~~~~~~  465 (478)
T 2y0c_A          389 WLERLSFVDDEAQAARDADALVIVTEWKIFKSPDFVALGRLWKTP-VIFDGRNLYEPETMSEQGIEYHPIGRPGSRQA  465 (478)
T ss_dssp             HHTTEEECSSHHHHTTTCSEEEECSCCGGGGSCCHHHHHTTCSSC-EEEESSCCSCHHHHHHTTCEEECSSSCCCHHH
T ss_pred             cccceeecCCHHHHHhCCCEEEEecCChHhhccCHHHHHhhcCCC-EEEECCCCCCHHHHHhcCCEEEEECcccchhH
Confidence            012467888999999999999999999999999999999999886 99999999999999999999999999877764

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=100.00  E-value=1.6e-76  Score=610.04  Aligned_cols=387  Identities=25%  Similarity=0.375  Sum_probs=332.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ||||+|||+|+||+++|..|++   |++|++||+++++++.++++..+++|+++++++... .+++++++|+++++++||
T Consensus        36 ~mkIaVIGlG~mG~~lA~~La~---G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~-~~~l~~ttd~~ea~~~aD  111 (432)
T 3pid_A           36 FMKITISGTGYVGLSNGVLIAQ---NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEK-PLNFRATTDKHDAYRNAD  111 (432)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT---TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS-CCCEEEESCHHHHHTTCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHc---CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhc-cCCeEEEcCHHHHHhCCC
Confidence            5899999999999999999985   799999999999999999999999999999887642 357999999999899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      +||+|||++.+.+    +..+|++++++++++|.+ ++++++||++||++|||++++.+.+.+      ..++++|||++
T Consensus       112 vViiaVPt~~~~~----~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~------~~v~~sPe~~~  180 (432)
T 3pid_A          112 YVIIATPTDYDPK----TNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGI------DNVIFSPEFLR  180 (432)
T ss_dssp             EEEECCCCEEETT----TTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTC------CCEEECCCCCC
T ss_pred             EEEEeCCCccccc----cccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhh------ccEeecCccCC
Confidence            9999999986542    236899999999999999 999999999999999999999887754      25789999999


Q ss_pred             ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhc--cCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 011654          161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAH--WVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE  238 (480)
Q Consensus       161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~--~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~  238 (480)
                      ||.+..++++|++||+|+.     ++..+++.++|..  +..+.+++.+++++||++||++|++++++|+++||++.+|+
T Consensus       181 ~G~A~~~~l~p~rIvvG~~-----~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae  255 (432)
T 3pid_A          181 EGRALYDNLHPSRIVIGER-----SARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAE  255 (432)
T ss_dssp             TTSHHHHHHSCSCEEESSC-----SHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhcccCCceEEecCC-----HHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999886     4577888898876  32223577899999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHHh
Q 011654          239 ATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSM  318 (480)
Q Consensus       239 ~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l  318 (480)
                      ++|+|+++|+++++++||||..|++||+||||||||||+++|...  ..|++  .+++++++++|++||.++++++.+. 
T Consensus       256 ~~GiD~~~v~~~~~~dprig~~~~~pg~G~GG~C~pkD~~~L~~~--~~~~~--~~li~~~~~~N~~~~~~v~~~i~~~-  330 (432)
T 3pid_A          256 SQGLNSKQIIEGVCLDPRIGNHYNNPSFGYGGYCLPKDTKQLLAN--YESVP--NNIIAAIVDANRTRKDFIADSILAR-  330 (432)
T ss_dssp             HTTCCHHHHHHHHHTSTTTCSSSCCCCSCCCTTTHHHHHHHHHHH--TTTSC--CSHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred             HcCCCHHHHHHHHccCCCCCcccCCCCCCCcccchhhhHHHHHHH--hcCCc--hhHHHHHHHHHHhhHHHHHHHHHhh-
Confidence            999999999999999999999999999999999999999999754  45777  6899999999999999999999875 


Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                          .+++|+|||||||+||+|+|+||++.|++.|+++|++|.+|||+++.+..                         .
T Consensus       331 ----~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~~-------------------------~  381 (432)
T 3pid_A          331 ----KPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDEF-------------------------F  381 (432)
T ss_dssp             ----CCSSEEEECC-----------CHHHHHHHHHHHTTCCEEEECTTCCSSEE-------------------------T
T ss_pred             ----cCCEEEEEeeEeCCCCcchhcChHHHHHHHHHhcCCEEEEECCCCChhhc-------------------------C
Confidence                37899999999999999999999999999999999999999999974321                         2


Q ss_pred             ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE  453 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~  453 (480)
                      +..+.+++++++++||+||+.+.|++|+++.     +.       +++|++|..+
T Consensus       382 ~~~~~~~~~~~~~~aD~iv~~~~~~~~~~~~-----~~-------~~tr~~~~~~  424 (432)
T 3pid_A          382 NSRVVRDLNAFKQEADVIISNRMAEELADVA-----DK-------VYTRDLFGND  424 (432)
T ss_dssp             TEEECCCHHHHHHHCSEEECSSCCGGGGGGG-----GG-------EECCCSSTTC
T ss_pred             CceEECCHHHHHhcCCEEEECCCChHHHHHh-----hc-------cCCCCCCCCc
Confidence            3567889999999999999999999987632     21       4999999754

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=100.00  E-value=3.3e-75  Score=608.53  Aligned_cols=423  Identities=26%  Similarity=0.394  Sum_probs=370.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|+||+++|..|+++  |++|++||+++++++.++++..+++++++++++.. ...+++++++++++++++||
T Consensus         1 mkI~VIG~G~vG~~~A~~la~~--G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aD   78 (436)
T 1mv8_A            1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD   78 (436)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCC
Confidence            7999999999999999999998  99999999999999999999999999999988753 22467999999998899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCC---CCEEEEecCCccch-HHHHHHHHHhc-CC--CCceeEe
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNS---NKIVVEKSTVPVKT-AEAIEKILTHN-SR--EIKYQIL  153 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~---~~iVi~~STv~~gt-~~~l~~~l~~~-~~--g~~~~v~  153 (480)
                      +||+|||+|.+.++     .+|+++++++++++.+++++   +++||++||+++|+ .+.+.+.+++. +.  +.++.+.
T Consensus        79 vviiaVptp~~~~~-----~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~  153 (436)
T 1mv8_A           79 VSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVG  153 (436)
T ss_dssp             EEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEE
T ss_pred             EEEEEcCCCcccCC-----CcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEE
Confidence            99999999986543     89999999999999999998   99999999999999 66788888764 32  3578899


Q ss_pred             eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHH
Q 011654          154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAM  233 (480)
Q Consensus       154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~  233 (480)
                      ++|+++.+|.+..++.+++++++|+.    ++++.+.++++|+.+..  +++.++++.+|+.|++.|++++++++++||+
T Consensus       154 ~~Pe~~~~G~~~~~~~~~~~iv~G~~----~~~~~~~~~~l~~~~~~--~v~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~  227 (436)
T 1mv8_A          154 TNPEFLRESTAIKDYDFPPMTVIGEL----DKQTGDLLEEIYRELDA--PIIRKTVEVAEMIKYTCNVWHAAKVTFANEI  227 (436)
T ss_dssp             ECCCCCCTTSHHHHHHSCSCEEEEES----SHHHHHHHHHHHTTSSS--CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ECcccccccccchhccCCCEEEEEcC----CHHHHHHHHHHHhccCC--CEEcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988889999998875    47888999999999863  5666899999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHhcCCCCCC--CccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHH
Q 011654          234 SALCEATGADVTQVSHAIGKDTRIG--PRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFV  311 (480)
Q Consensus       234 ~~l~~~~Gid~~~v~~~~~~~~~~~--~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~  311 (480)
                      +.+|+++|+|++++.++++.++|++  ++++.||+||||+|++||+.++.+.|+++|++  .++++++.++|+.||.+++
T Consensus       228 ~~l~~~~Gid~~~v~~~~~~~~r~~~~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~--~pl~~~v~~in~~~~~~~~  305 (436)
T 1mv8_A          228 GNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQLDVE--HPMLGSLMRSNSNQVQKAF  305 (436)
T ss_dssp             HHHHHHTTSCHHHHHHHHTTCTTTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCC--CTTGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHhcCCCCCCCcccCCCCcccccCcCcHhhHHHHHHHHHHcCCC--cHHHHHHHHHHhHhHHHHH
Confidence            9999999999999999999999987  78899999999999999999999999999998  7899999999999999999


Q ss_pred             HHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHH---HhhhccccCCCCCCC
Q 011654          312 NRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQ---RDLSMKKFDWDHPIH  388 (480)
Q Consensus       312 ~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~---~~~~~~~~~~~~~~~  388 (480)
                      +++.+.     +++||+|||+|||+||+|+||||++.|++.|+++|++|.+|||++++....   ..|+.      ++.+
T Consensus       306 ~~~~~~-----~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~------~~~~  374 (436)
T 1mv8_A          306 DLITSH-----DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIE------SKIP  374 (436)
T ss_dssp             HHHTTS-----SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHH------HTSH
T ss_pred             HHHHHh-----cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcc------cccc
Confidence            998753     689999999999999999999999999999999999999999995432100   11110      0000


Q ss_pred             CCCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCcEEEEecC
Q 011654          389 LQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGK  467 (480)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~  467 (480)
                             .... .+++++++++++||+|||+|+|++|+++|    .+.|+.+ +|||+||++++++    ||.|+||||
T Consensus       375 -------~~~~-~~~~~~~~~~~~~d~~vi~~~~~~~~~~~----~~~~~~~-~i~D~r~~~~~~~----g~~~~~ig~  436 (436)
T 1mv8_A          375 -------HVSS-LLVSDLDEVVASSDVLVLGNGDELFVDLV----NKTPSGK-KLVDLVGFMPHTT----TAQAEGICW  436 (436)
T ss_dssp             -------HHHT-TBCSCHHHHHHHCSEEEECSCCGGGHHHH----HSCCTTC-EEEESSSCCSSSC----CSSEEESCC
T ss_pred             -------cccc-cccCCHHHHHhCCcEEEEeCCcHHHHhhh----HHhcCCC-EEEECCCCCCccc----CcEEEEecC
Confidence                   0001 35678999999999999999999999887    3567666 9999999999864    999999996

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=100.00  E-value=9.7e-70  Score=560.97  Aligned_cols=396  Identities=22%  Similarity=0.326  Sum_probs=342.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|+||+++|..|++   ||+|++||+++++++.++++..+++++++++++.. ..+++++++++.++++++|+
T Consensus         1 MkI~VIG~G~vG~~~A~~La~---G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~-~~~~l~~t~~~~~~~~~aDv   76 (402)
T 1dlj_A            1 MKIAVAGSGYVGLSLGVLLSL---QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKS-KQLSIKATLDSKAAYKEAEL   76 (402)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT---TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHH-SCCCEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCCHHHHHHHHHHhC---CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHh-ccCcEEEeCCHHHHhcCCCE
Confidence            799999999999999999986   69999999999999999999999999999888764 24568899999888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAE  161 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~  161 (480)
                      ||+|||+|.+.    ....+|+++++++++++.+ ++++++||++||+++|+++.+.+.+.+     + .++++||++.+
T Consensus        77 viiavpt~~~~----~~~~~dl~~v~~v~~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~-----~-~v~~~Pe~~~~  145 (402)
T 1dlj_A           77 VIIATPTNYNS----RINYFDTQHVETVIKEVLS-VNSHATLIIKSTIPIGFITEMRQKFQT-----D-RIIFSPEFLRE  145 (402)
T ss_dssp             EEECCCCCEET----TTTEECCHHHHHHHHHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTC-----S-CEEECCCCCCT
T ss_pred             EEEecCCCccc----CCCCccHHHHHHHHHHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCC-----C-eEEECCccccC
Confidence            99999998532    1237899999999999999 899999999999999999988776543     2 57899999999


Q ss_pred             cccccccCCCCeEEEEeCCCc--chHHHHHHHHHHHhc-cCCCC-eEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          162 GTAIQDLFNPDRVLIGGRETP--EGQKAIQALKDVYAH-WVPED-RIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       162 G~a~~~~~~~~~vviG~~~~~--~~~~~~~~~~~l~~~-~~~~~-~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      |.+..++..++++++|+.+..  ...+..+.+.++|.. ..+.. .++.+++++|||+|+++|++++++++++||++.+|
T Consensus       146 G~a~~~~~~~~riviG~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~  225 (402)
T 1dlj_A          146 SKALYDNLYPSRIIVSCEENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYA  225 (402)
T ss_dssp             TSTTHHHHSCSCEEEECCTTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhcccCCCEEEEeCCCcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999888889999999986310  011556778888864 43212 47788999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011654          238 EATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSS  317 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~  317 (480)
                      +++|+|+++++++++.+||++.+++.||+||||||+|||++++.+.++  |++  .+++++++++|++||.++++++.+.
T Consensus       226 ~~~Gid~~~v~~~~~~~~ri~~~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~--~~l~~~~~~~N~~~~~~~~~~~~~~  301 (402)
T 1dlj_A          226 ESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQLLANYN--NIP--QTLIEAIVSSNNVRKSYIAKQIINV  301 (402)
T ss_dssp             HHTTCCHHHHHHHHHTSTTTCSSSCCCCSSCCSSHHHHHHHHHHHHHT--TSS--CSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHhccCCCCCcCCCCCCCccCCccHHhhHHHHHHHhc--CCC--hHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            999999999999999999999889999999999999999999999885  776  7899999999999999999999998


Q ss_pred             hcC-cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCC
Q 011654          318 MFN-TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPA  396 (480)
Q Consensus       318 l~~-~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (480)
                      +++ .+++++|+|||+|||+||+|+||||++.|++.|+++|++|.+|||+++...   .                     
T Consensus       302 ~~~~~~~~~~v~vlGlafK~~~~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~---~---------------------  357 (402)
T 1dlj_A          302 LKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE---S---------------------  357 (402)
T ss_dssp             HTTSCCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC---T---------------------
T ss_pred             hhhcCCCCCEEEEEeeeccCCCcccccChHHHHHHHHHHCCCEEEEECCCCChHH---H---------------------
Confidence            864 678999999999999999999999999999999999999999999976421   0                     


Q ss_pred             CCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011654          397 SKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDV  452 (480)
Q Consensus       397 ~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~  452 (480)
                      ..+..++.++++++++||+||+.|.|++|+++.     +       -+.+|.+|..
T Consensus       358 ~~~~~~~~~~~~~~~~~d~~v~~~~h~~~~~~~-----~-------~~~~~~~~~~  401 (402)
T 1dlj_A          358 EDQSVLVNDLENFKKQANIIVTNRYDNELQDVK-----N-------KVYSRDIFGR  401 (402)
T ss_dssp             TCCSEECCCHHHHHHHCSEEECSSCCGGGGGGG-----G-------GEECCCCSSC
T ss_pred             HcCCeecCCHHHHHhCCcEEEEecCChHHHHHh-----h-------ccccccccCC
Confidence            012456788999999999999999999998742     1       1458888853

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=100.00  E-value=3.4e-32  Score=269.44  Aligned_cols=250  Identities=16%  Similarity=0.159  Sum_probs=207.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |+||+|||+|.||.+||.+|.++  ||+|++||+++++++.+.+.                   +.+..++++++++.||
T Consensus         3 M~kIgfIGlG~MG~~mA~~L~~~--G~~v~v~dr~~~~~~~l~~~-------------------Ga~~a~s~~e~~~~~d   61 (300)
T 3obb_A            3 MKQIAFIGLGHMGAPMATNLLKA--GYLLNVFDLVQSAVDGLVAA-------------------GASAARSARDAVQGAD   61 (300)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHT-------------------TCEECSSHHHHHTTCS
T ss_pred             cCEEEEeeehHHHHHHHHHHHhC--CCeEEEEcCCHHHHHHHHHc-------------------CCEEcCCHHHHHhcCC
Confidence            67999999999999999999998  99999999999999988752                   3567889999999999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHH---HHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARM---IANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~---i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      +||+|||++              ..+++++..   +.+.++++++||++||+.|.+++++.+.+++.+    ..++.+|.
T Consensus        62 vv~~~l~~~--------------~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G----~~~lDaPV  123 (300)
T 3obb_A           62 VVISMLPAS--------------QHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERG----LAMLDAPV  123 (300)
T ss_dssp             EEEECCSCH--------------HHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTT----CEEEECCE
T ss_pred             ceeecCCch--------------HHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CEEEecCC
Confidence            999999864              345666643   677888999999999999999999999998764    45678888


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      ..++..+....+   .+++||+     ++++++++++|+.+++ ..+++++.+.+..+|+++|.+.+.+++.++|...++
T Consensus       124 sGg~~~A~~G~L---~imvGG~-----~~~~~~~~p~l~~~g~-~i~~~G~~G~g~~~Kl~~N~l~~~~~~a~aEa~~la  194 (300)
T 3obb_A          124 SGGTAGAAAGTL---TFMVGGD-----AEALEKARPLFEAMGR-NIFHAGPDGAGQVAKVCNNQLLAVLMIGTAEAMALG  194 (300)
T ss_dssp             ESCHHHHHHTCE---EEEEESC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHhCCE---EEEEeCC-----HHHHHHHHHHHHHhCC-CEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777655544433   4788996     8899999999999974 456678999999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCCCC--------------cc--ccCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHH
Q 011654          238 EATGADVTQVSHAIGKDTRIGP--------------RF--LNSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI  300 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~~~--------------~~--~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~  300 (480)
                      ++.|+|++.+.++++..+..++              ..  -...++|....+.||+.+..++|++.|++  .++.+.+.
T Consensus       195 ~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~~~l~~KDl~l~~~~A~~~g~~--~p~~~~a~  271 (300)
T 3obb_A          195 VANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASS--TPMGSLAL  271 (300)
T ss_dssp             HHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCccchHHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence            9999999999999976542111              00  13456788889999999999999999998  66665544

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=100.00  E-value=8.7e-32  Score=266.60  Aligned_cols=249  Identities=17%  Similarity=0.214  Sum_probs=202.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|+||.++|..|+++  ||+|++||+++++++.+++.                   +++++++++++++ +|+
T Consensus        16 ~~I~vIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~-aDv   73 (296)
T 3qha_A           16 LKLGYIGLGNMGAPMATRMTEW--PGGVTVYDIRIEAMTPLAEA-------------------GATLADSVADVAA-ADL   73 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHTTS--TTCEEEECSSTTTSHHHHHT-------------------TCEECSSHHHHTT-SSE
T ss_pred             CeEEEECcCHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHC-------------------CCEEcCCHHHHHh-CCE
Confidence            5899999999999999999998  99999999999988887752                   3577889999888 999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAE  161 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~  161 (480)
                      ||+|||++              ..++++++++.+.++++++||++||++|++++.+.+.+.+.+    ..++.+|....+
T Consensus        74 vi~~vp~~--------------~~~~~v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g----~~~~~~pv~g~~  135 (296)
T 3qha_A           74 IHITVLDD--------------AQVREVVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARD----IHIVDAPVSGGA  135 (296)
T ss_dssp             EEECCSSH--------------HHHHHHHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGT----CEEEECCEESCH
T ss_pred             EEEECCCh--------------HHHHHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcC----CEEEeCCCcCCH
Confidence            99999864              245778899999999999999999999999999988887653    234566765544


Q ss_pred             cccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHhC
Q 011654          162 GTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATG  241 (480)
Q Consensus       162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~G  241 (480)
                      ..+....   ..+++|++     ++.+++++++|+.++. ..+++++++.++++|+++|.+.+.++++++|+..+|+++|
T Consensus       136 ~~a~~g~---l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~E~~~l~~~~G  206 (296)
T 3qha_A          136 AAAARGE---LATMVGAD-----REVYERIKPAFKHWAA-VVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAG  206 (296)
T ss_dssp             HHHHHTC---EEEEEECC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCC---ccEEecCC-----HHHHHHHHHHHHHHcC-CeEEcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            3332221   14678875     7899999999999863 3456678999999999999999999999999999999999


Q ss_pred             CCHHHH------HHHhcCCCCC-----CCcccc-CCCCCcc-----cchhhhHHHHHHHHHHcCCchhhhHHHHHHH
Q 011654          242 ADVTQV------SHAIGKDTRI-----GPRFLN-SSVGFGG-----SCFQKDILNLVYICECNGLTEVANYWKQVIK  301 (480)
Q Consensus       242 id~~~v------~~~~~~~~~~-----~~~~~~-pg~g~gg-----~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~  301 (480)
                      +|++++      .++++..+.-     +.+++. .++||++     .|++||+.++.+.|++.|++  .++++.+.+
T Consensus       207 ~d~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~f~~~~~~~~~~~KD~~~~~~~a~~~g~~--~p~~~~~~~  281 (296)
T 3qha_A          207 LDLQALGRVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTRGLGEKDLSLALALGEAVSVD--LPLARLAYE  281 (296)
T ss_dssp             CCHHHHHHHHHHHHHHHCCGGGGCCCSSCSCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred             CCHHHHhhhcchHHHHhcCcccCHHhhchhhhhcCCCCCchhhhhhHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence            999999      9988763211     222222 2578888     99999999999999999998  666665543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=100.00  E-value=2.6e-31  Score=266.01  Aligned_cols=250  Identities=17%  Similarity=0.130  Sum_probs=205.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +|||+|||+|+||.++|..|+++  |++|++||+++++++.+.+.                   +++.+++++++++++|
T Consensus        31 ~~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~l~~~-------------------g~~~~~~~~e~~~~aD   89 (320)
T 4dll_A           31 ARKITFLGTGSMGLPMARRLCEA--GYALQVWNRTPARAASLAAL-------------------GATIHEQARAAARDAD   89 (320)
T ss_dssp             CSEEEEECCTTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTT-------------------TCEEESSHHHHHTTCS
T ss_pred             CCEEEEECccHHHHHHHHHHHhC--CCeEEEEcCCHHHHHHHHHC-------------------CCEeeCCHHHHHhcCC
Confidence            47999999999999999999998  99999999999999988763                   3567889999999999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHH--HHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR--MIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~--~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      +||+|||++              ..++.++.  ++.+.++++++||++||++|.+++.+.+.+.+.+    ..++.+|..
T Consensus        90 vVi~~vp~~--------------~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g----~~~~~~pv~  151 (320)
T 4dll_A           90 IVVSMLENG--------------AVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALG----IAHLDTPVS  151 (320)
T ss_dssp             EEEECCSSH--------------HHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCEE
T ss_pred             EEEEECCCH--------------HHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcC----CEEEeCCCc
Confidence            999999864              23566666  7888899999999999999999999888887653    345667876


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE  238 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~  238 (480)
                      ..+..+....   ..+++|++     ++++++++++|+.+ . ..++.++++.++++|+++|.+.+.++++++|+..+|+
T Consensus       152 g~~~~a~~g~---l~i~~gg~-----~~~~~~~~~ll~~~-~-~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~~  221 (320)
T 4dll_A          152 GGTVGAEQGT---LVIMAGGK-----PADFERSLPLLKVF-G-RATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFAT  221 (320)
T ss_dssp             CHHHHHHHTC---EEEEEESC-----HHHHHHHHHHHHHH-E-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHhHHhcCC---eeEEeCCC-----HHHHHHHHHHHHhc-C-CEEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5543332221   15778875     78999999999998 4 4667778999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHhcCCCCCC-------Cccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHH
Q 011654          239 ATGADVTQVSHAIGKDTRIG-------PRFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK  301 (480)
Q Consensus       239 ~~Gid~~~v~~~~~~~~~~~-------~~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~  301 (480)
                      +.|+|++++.++++.++..+       ..++  .+++||+..|++||+.++.+++++.|++  .++.+.+.+
T Consensus       222 ~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~gf~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~  291 (320)
T 4dll_A          222 KGGADMAKVKEAITGGFADSRVLQLHGQRMVERDFAPRARLSIQLKDMRNALATAQEIGFD--APITGLFEQ  291 (320)
T ss_dssp             HTSCCHHHHHHHHTTSTTCBHHHHTHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHcccccCHHHHHhhhhhccCCCCCcccHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence            99999999999998765211       1222  3467899999999999999999999998  666655443

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=100.00  E-value=1.5e-31  Score=264.65  Aligned_cols=249  Identities=15%  Similarity=0.152  Sum_probs=197.7

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEE
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIV   82 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvV   82 (480)
                      ||+|||+|+||.+||.+|+++  ||+|++||+++++++.+.+.                   +.+.++++.++++.+|+|
T Consensus         7 kIgfIGLG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------G~~~~~s~~e~~~~~dvv   65 (297)
T 4gbj_A            7 KIAFLGLGNLGTPIAEILLEA--GYELVVWNRTASKAEPLTKL-------------------GATVVENAIDAITPGGIV   65 (297)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT--TCEEEEC-------CTTTTT-------------------TCEECSSGGGGCCTTCEE
T ss_pred             cEEEEecHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHc-------------------CCeEeCCHHHHHhcCCce
Confidence            899999999999999999998  99999999999988776542                   356788999999999999


Q ss_pred             EEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccccc
Q 011654           83 FVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAE  161 (480)
Q Consensus        83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~  161 (480)
                      |+|||++.              .+++++ ..+.+.+++++++|++||+.|.+++++.+.+++.+    +.++.+|...++
T Consensus        66 i~~l~~~~--------------~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g----~~~ldapVsGg~  127 (297)
T 4gbj_A           66 FSVLADDA--------------AVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYG----AHYVGAPIFARP  127 (297)
T ss_dssp             EECCSSHH--------------HHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCEECCH
T ss_pred             eeeccchh--------------hHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcC----CceecCCcCCCc
Confidence            99998752              233333 45778889999999999999999999999888764    467889988777


Q ss_pred             cccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeC-ChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHh
Q 011654          162 GTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITT-NLWSAELSKLAANAFLAQRISSVNAMSALCEAT  240 (480)
Q Consensus       162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~  240 (480)
                      ..+.....   .+++||+     ++.+++++++|+.+++ ..++++ +++.++.+|+++|.+.+.+++.++|...+|+++
T Consensus       128 ~~a~~g~l---~im~gG~-----~~~~~~~~~~l~~~g~-~i~~~g~~~G~g~~~Kl~~N~~~~~~~~~~aEa~~la~~~  198 (297)
T 4gbj_A          128 EAVRAKVG---NICLSGN-----AGAKERIKPIVENFVK-GVFDFGDDPGAANVIKLAGNFMIACSLEMMGEAFTMAEKN  198 (297)
T ss_dssp             HHHHHTCC---EEEEEEC-----HHHHHHHHHHHHTTCS-EEEECCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccc---eeecccc-----hhHHHHHHHHHHHhhC-CeEEecCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            66554433   5788886     8899999999999974 344555 579999999999999999999999999999999


Q ss_pred             CCCHHHHHHHhcCCCCCCCc-------cc--cC-CCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHH
Q 011654          241 GADVTQVSHAIGKDTRIGPR-------FL--NS-SVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK  301 (480)
Q Consensus       241 Gid~~~v~~~~~~~~~~~~~-------~~--~p-g~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~  301 (480)
                      |+|+++++++++..+.-++.       ++  .+ .+||....+.||+.+.+++|++.|++  .++.+.+.+
T Consensus       199 Gld~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~p~~f~~~l~~KDl~l~~~~A~~~g~~--~p~~~~~~~  267 (297)
T 4gbj_A          199 GISRQSIYEMLTSTLFAAPIFQNYGKLVASNTYEPVAFRFPLGLKDINLTLQTASDVNAP--MPFADIIRN  267 (297)
T ss_dssp             TCCHHHHHHHHHTTTTCSHHHHHHHHHHHHTCCCSCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred             CCCHHHHHHHHHhhcccCchhhccCccccCCCCCCccchhHHHHHHHHHHHHHHHHhCCC--ChHHHHHHH
Confidence            99999999999876532211       11  22 24788889999999999999999998  666655443

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.98  E-value=1.4e-31  Score=266.89  Aligned_cols=251  Identities=12%  Similarity=0.108  Sum_probs=204.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ||||+|||+|+||.+||..|+++  ||+|++||+++++++.+.+.                   +++.++++++++++||
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~l~~~-------------------g~~~~~~~~~~~~~aD   79 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKN--GFKVTVWNRTLSKCDELVEH-------------------GASVCESPAEVIKKCK   79 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSGGGGHHHHHT-------------------TCEECSSHHHHHHHCS
T ss_pred             CCEEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHC-------------------CCeEcCCHHHHHHhCC
Confidence            68999999999999999999998  99999999999998887742                   3567889999899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      +||+|||++              ..+++++   +++.+.++++++||++||++|++++.+.+.+++.+    ..++.+|.
T Consensus        80 vvi~~vp~~--------------~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g----~~~v~~pv  141 (310)
T 3doj_A           80 YTIAMLSDP--------------CAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKG----GRFVEGPV  141 (310)
T ss_dssp             EEEECCSSH--------------HHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCE
T ss_pred             EEEEEcCCH--------------HHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcC----CEEEeCCC
Confidence            999999865              2356666   77888899999999999999999999988887653    23456786


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      ...+..+...   ...+++|++     ++.+++++++|+.++. ..++.++++.++++|+++|.+.+.++++++|+..+|
T Consensus       142 ~g~~~~a~~g---~l~i~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~  212 (310)
T 3doj_A          142 SGSKKPAEDG---QLIILAAGD-----KALFEESIPAFDVLGK-RSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLA  212 (310)
T ss_dssp             ECCHHHHHHT---CEEEEEEEC-----HHHHHHHHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCChhHHhcC---CeEEEEcCC-----HHHHHHHHHHHHHhCC-CEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6554433222   114677875     7899999999999863 345566899999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHH
Q 011654          238 EATGADVTQVSHAIGKDTRIGP-------RFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK  301 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~  301 (480)
                      ++.|+|++++.++++.++..++       .++  .+.+||++.|+.||+.++.++|++.|++  .++.+.+.+
T Consensus       213 ~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~  283 (310)
T 3doj_A          213 DKSGLSSDTLLDILDLGAMTNPMFKGKGPSMNKSSYPPAFPLKHQQKDMRLALALGDENAVS--MPVAAAANE  283 (310)
T ss_dssp             HHTTSCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence            9999999999999987642211       122  3467899999999999999999999998  666665443

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.97  E-value=1.5e-30  Score=256.53  Aligned_cols=251  Identities=16%  Similarity=0.089  Sum_probs=204.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .|||+|||+|+||.++|..|+++  ||+|++||+++++++.+.+.                   +++.+++++++++++|
T Consensus         1 s~~i~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~~aD   59 (287)
T 3pef_A            1 SQKFGFIGLGIMGSAMAKNLVKA--GCSVTIWNRSPEKAEELAAL-------------------GAERAATPCEVVESCP   59 (287)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSGGGGHHHHHT-------------------TCEECSSHHHHHHHCS
T ss_pred             CCEEEEEeecHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCC
Confidence            38999999999999999999998  99999999999998887753                   3567889999899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      +||+|||++              ..+++++   +++.+.++++++||++||++|.+++.+.+.+++.+    ..++.+|.
T Consensus        60 vvi~~vp~~--------------~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g----~~~~~~pv  121 (287)
T 3pef_A           60 VTFAMLADP--------------AAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKG----GRFLEAPV  121 (287)
T ss_dssp             EEEECCSSH--------------HHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCE
T ss_pred             EEEEEcCCH--------------HHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhC----CEEEECCC
Confidence            999999864              2356777   78888999999999999999999999888887653    23455776


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      ...+..+....   ..+++|++     ++..++++++|+.++. ..++.++++.++++|+++|.+.+.++++++|+..+|
T Consensus       122 ~g~~~~a~~g~---l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~E~~~l~  192 (287)
T 3pef_A          122 SGSKKPAEDGT---LIILAAGD-----RNLYDEAMPGFEKMGK-KIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALG  192 (287)
T ss_dssp             ECCHHHHHHTC---EEEEEEEC-----HHHHHHHHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHhcCC---EEEEEeCC-----HHHHHHHHHHHHHhCC-CeEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66554432221   14677875     7899999999999863 345567899999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCCC-------Cccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHH
Q 011654          238 EATGADVTQVSHAIGKDTRIG-------PRFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK  301 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~~-------~~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~  301 (480)
                      ++.|+|++++.++++.++..+       ..++  .+.+||++.|+.||+.++.++|++.|++  .++.+.+.+
T Consensus       193 ~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~  263 (287)
T 3pef_A          193 EKAGLATDAILDVIGAGAMANPMFALKGGLIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQP--LVASAAANE  263 (287)
T ss_dssp             HHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHhcccccHHHHHHhhhhhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence            999999999999998654211       1122  2467899999999999999999999998  676665544

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.97  E-value=3.1e-30  Score=256.30  Aligned_cols=251  Identities=13%  Similarity=0.091  Sum_probs=200.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|+||.++|..|+++  |++|++||+++++++.+.+.                  +...+++++++++++||+
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~------------------g~~~~~~~~~e~~~~aDv   67 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRA--GLSTWGADLNPQACANLLAE------------------GACGAAASAREFAGVVDA   67 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT------------------TCSEEESSSTTTTTTCSE
T ss_pred             CeEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHc------------------CCccccCCHHHHHhcCCE
Confidence            7899999999999999999998  99999999999999988753                  112236788888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      ||+|||++              ..++.++   +++.+.++++++||++||++|.+++.+.+.+.+.+    ..++.+|..
T Consensus        68 vi~~vp~~--------------~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g----~~~~~~pv~  129 (303)
T 3g0o_A           68 LVILVVNA--------------AQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALN----LNMLDAPVS  129 (303)
T ss_dssp             EEECCSSH--------------HHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTT----CEEEECCEE
T ss_pred             EEEECCCH--------------HHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcC----CeEEeCCCC
Confidence            99999864              2345565   67788899999999999999999999888887653    234457766


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCC-hhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTN-LWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      ..+..+....   ..+++|++     ++.+++++++|+.++. ..++.++ ++.+++.|+++|.+.++++++++|+..+|
T Consensus       130 g~~~~a~~g~---l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~~~~~g~a~~~Kl~~N~~~~~~~~~~~Ea~~l~  200 (303)
T 3g0o_A          130 GGAVKAAQGE---MTVMASGS-----EAAFTRLKPVLDAVAS-NVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALA  200 (303)
T ss_dssp             SCHHHHHTTC---EEEEEECC-----HHHHHHHHHHHHHHEE-EEEEEESSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhhhhcCC---eEEEeCCC-----HHHHHHHHHHHHHHCC-CEEECCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5544332221   14677764     7899999999999863 3455666 89999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHH
Q 011654          238 EATGADVTQVSHAIGKDTRIGP-------RFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK  301 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~  301 (480)
                      ++.|+|++++.++++.....++       .++  .+.+||+..|+.||+.+++++|++.|++  .++.+.+.+
T Consensus       201 ~~~G~d~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kD~~~~~~~a~~~g~~--~p~~~~~~~  271 (303)
T 3g0o_A          201 ARAGIPLDVMYDVVTHAAGNSWMFENRMQHVVDGDYTPRSAVDIFVKDLGLVADTAKALRFP--LPLASTALN  271 (303)
T ss_dssp             HHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHhcccCCHHHHhhhHHHhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence            9999999999999987542111       122  2457899999999999999999999998  666665443

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.97  E-value=1.4e-30  Score=256.64  Aligned_cols=251  Identities=18%  Similarity=0.143  Sum_probs=202.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ||||+|||+|+||.++|..|+++  ||+|++||+++++++.+.+.                   +++.++++++++++||
T Consensus         1 M~~I~iiG~G~mG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~~~~~~ad   59 (287)
T 3pdu_A            1 MTTYGFLGLGIMGGPMAANLVRA--GFDVTVWNRNPAKCAPLVAL-------------------GARQASSPAEVCAACD   59 (287)
T ss_dssp             CCCEEEECCSTTHHHHHHHHHHH--TCCEEEECSSGGGGHHHHHH-------------------TCEECSCHHHHHHHCS
T ss_pred             CCeEEEEccCHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHC-------------------CCeecCCHHHHHHcCC
Confidence            78999999999999999999998  99999999999988877642                   3567889999899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      +||+|||++              ..+++++   +++.+.++++++||++||+.|++++.+.+.+++.+    ..++.+|.
T Consensus        60 vvi~~v~~~--------------~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g----~~~~~~pv  121 (287)
T 3pdu_A           60 ITIAMLADP--------------AAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARG----GRFLEAPV  121 (287)
T ss_dssp             EEEECCSSH--------------HHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCE
T ss_pred             EEEEEcCCH--------------HHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcC----CEEEECCc
Confidence            999999864              2356666   77888889999999999999999999888887653    23455676


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      ...+..+....   ..+++|++     ++..++++++|+.++. ..++.++++.+++.|+++|.+.+.++++++|+..+|
T Consensus       122 ~g~~~~a~~g~---l~~~~gg~-----~~~~~~~~~ll~~~g~-~~~~~g~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~  192 (287)
T 3pdu_A          122 SGTKKPAEDGT---LIILAAGD-----QSLFTDAGPAFAALGK-KCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALG  192 (287)
T ss_dssp             ECCHHHHHHTC---EEEEEEEC-----HHHHHHTHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHhcCC---EEEEEeCC-----HHHHHHHHHHHHHhCC-CEEEcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55443222211   14677875     7899999999999863 345566899999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCCC-------Cccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHH
Q 011654          238 EATGADVTQVSHAIGKDTRIG-------PRFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK  301 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~~-------~~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~  301 (480)
                      ++.|+|++++.++++.++..+       ..++  .+.+||+..|+.||+.++.+.+++.|++  .++.+.+.+
T Consensus       193 ~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~  263 (287)
T 3pdu_A          193 RNCGLDGGQLLEVLDAGAMANPMFKGKGQMLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQP--LHGAATANE  263 (287)
T ss_dssp             HHTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHhccccChHHHhhccccccCCCCCCCcHHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence            999999999999998754211       1122  3467899999999999999999999998  666665543

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.96  E-value=6.9e-28  Score=240.78  Aligned_cols=242  Identities=13%  Similarity=0.097  Sum_probs=180.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCH-------HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec-C
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISV-------SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST-D   71 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~-------~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~-d   71 (480)
                      +|||+|||+|+||.++|..|+++  | ++|++||+++       +..+.+.+                  .+ +  ++ +
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L~~~--G~~~V~~~dr~~~~~~~~~~~~~~~~~------------------~g-~--~~~s   80 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGLGGR--NAARLAAYDLRFNDPAASGALRARAAE------------------LG-V--EPLD   80 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT--TCSEEEEECGGGGCTTTHHHHHHHHHH------------------TT-C--EEES
T ss_pred             CCeEEEECccHHHHHHHHHHHHc--CCCeEEEEeCCCccccchHHHHHHHHH------------------CC-C--CCCC
Confidence            37999999999999999999998  9 9999999997       34444332                  12 3  44 7


Q ss_pred             HHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCcee
Q 011654           72 IEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQ  151 (480)
Q Consensus        72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~  151 (480)
                      +++++++||+||+|||++.               ..+.++++.+.++++++||++||++|++++++.+.+++.+.  .  
T Consensus        81 ~~e~~~~aDvVi~avp~~~---------------~~~~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~--~--  141 (317)
T 4ezb_A           81 DVAGIACADVVLSLVVGAA---------------TKAVAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKG--S--  141 (317)
T ss_dssp             SGGGGGGCSEEEECCCGGG---------------HHHHHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSC--E--
T ss_pred             HHHHHhcCCEEEEecCCHH---------------HHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCC--e--
Confidence            7788899999999999653               13455889999999999999999999999999888876532  2  


Q ss_pred             EeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCC-hhHHHHhhhHHhHHHHHHHHHH
Q 011654          152 ILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTN-LWSAELSKLAANAFLAQRISSV  230 (480)
Q Consensus       152 v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~  230 (480)
                      ++.+|....+. +..+   ...+++|++     ++  ++++++|+.++. ..+++++ ++.|+++|+++|++.+++++++
T Consensus       142 ~~d~pv~g~~~-a~~g---~l~i~vgg~-----~~--~~~~~ll~~~g~-~v~~~g~~~g~a~~~Kl~~N~~~~~~~~~~  209 (317)
T 4ezb_A          142 FVEGAVMARVP-PYAE---KVPILVAGR-----RA--VEVAERLNALGM-NLEAVGETPGQASSLKMIRSVMIKGVEALL  209 (317)
T ss_dssp             EEEEEECSCST-TTGG---GSEEEEEST-----TH--HHHHHHHHTTTC-EEEEEESSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeccCCCCch-hhcC---CEEEEEeCC-----hH--HHHHHHHHHhCC-CeEEeCCCcCHHHHHHHHHHHHHHHHHHHH
Confidence            23334332111 1111   125788886     23  789999999863 3455565 8999999999999999999999


Q ss_pred             HHHHHHHHHhCCCHHHHHHHhcCCC-CCC-----Ccccc--CCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHH
Q 011654          231 NAMSALCEATGADVTQVSHAIGKDT-RIG-----PRFLN--SSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKV  302 (480)
Q Consensus       231 nE~~~l~~~~Gid~~~v~~~~~~~~-~~~-----~~~~~--pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~  302 (480)
                      ||+..+|+++|+|+ ++++.+..+. +..     ..++.  +++||+   ++||+.++.+++++.|++  .++.+.+.+.
T Consensus       210 ~E~~~la~~~Gid~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~---~~KDl~~~~~~a~~~g~~--~pl~~~~~~~  283 (317)
T 4ezb_A          210 IEALSSAERAGVTE-RILDSVQETFPGLDWRDVADYYLSRTFEHGAR---RVTEMTEAAETIESFGLN--APMSRAACET  283 (317)
T ss_dssp             HHHHHHHHHTTCHH-HHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHTTTCC--CHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCH-HHHHHHHhcCccccHHHhhhhhhcCCCCCCcc---hHHHHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence            99999999999999 5666665432 211     11221  234444   699999999999999998  6777665543

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.95  E-value=1.3e-27  Score=238.24  Aligned_cols=248  Identities=11%  Similarity=0.055  Sum_probs=187.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCC--HHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDIS--VSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~--~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      ||||+|||+|+||.++|..|+++  |+ +|++||++  +++.+.+.+.                   +++.+++++++++
T Consensus        24 ~~~I~iIG~G~mG~~~A~~L~~~--G~~~V~~~dr~~~~~~~~~~~~~-------------------g~~~~~~~~e~~~   82 (312)
T 3qsg_A           24 AMKLGFIGFGEAASAIASGLRQA--GAIDMAAYDAASAESWRPRAEEL-------------------GVSCKASVAEVAG   82 (312)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHH--SCCEEEEECSSCHHHHHHHHHHT-------------------TCEECSCHHHHHH
T ss_pred             CCEEEEECccHHHHHHHHHHHHC--CCCeEEEEcCCCCHHHHHHHHHC-------------------CCEEeCCHHHHHh
Confidence            47999999999999999999998  99 99999997  6777766642                   3567788989899


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      +||+||+|||++.               ..++++++.+.++++++||++||+.|++++.+.+.+.+...+  ..++.+|.
T Consensus        83 ~aDvVi~~vp~~~---------------~~~~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g--~~~vd~pv  145 (312)
T 3qsg_A           83 ECDVIFSLVTAQA---------------ALEVAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPS--AQYAAVAV  145 (312)
T ss_dssp             HCSEEEECSCTTT---------------HHHHHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTT--CEEEEEEE
T ss_pred             cCCEEEEecCchh---------------HHHHHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCC--CeEEeccc
Confidence            9999999999753               134678899999999999999999999999988877765211  22334454


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCC-hhHHHHhhhHHhHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTN-LWSAELSKLAANAFLAQRISSVNAMSAL  236 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l  236 (480)
                      ...+..+ ..   ...+++|++     ++  ++++++|+.++. ..++.++ ++.|+++|+++|++.+.++++++|+..+
T Consensus       146 ~g~~~~~-~g---~l~i~vgg~-----~~--~~~~~ll~~~g~-~~~~~g~~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l  213 (312)
T 3qsg_A          146 MSAVKPH-GH---RVPLVVDGD-----GA--RRFQAAFTLYGC-RIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAA  213 (312)
T ss_dssp             CSCSTTT-GG---GSEEEEEST-----TH--HHHHHHHHTTTC-EEEECCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCchhh-cC---CEEEEecCC-----hH--HHHHHHHHHhCC-CeEEcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3322222 11   125778886     22  889999999863 3344555 8999999999999999999999999999


Q ss_pred             HHHhCCCHHHHHHHhcCCC--CC----CCcccc--CCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHHH
Q 011654          237 CEATGADVTQVSHAIGKDT--RI----GPRFLN--SSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVND  304 (480)
Q Consensus       237 ~~~~Gid~~~v~~~~~~~~--~~----~~~~~~--pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~  304 (480)
                      |+++|+|+ ++++.++.+.  +.    +..++.  +++||.   +.||+.++++.+++.|++  .++++.+.+.-+
T Consensus       214 a~~~Gld~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~---~~KDl~~~~~~a~~~g~~--~pl~~~~~~~~~  283 (312)
T 3qsg_A          214 AEKMGLAD-RVLASLDASFPEHHLRDLALYLVERNLEHADR---RAHELGEVAATLCSVGVE--PLVAEAGYRRLT  283 (312)
T ss_dssp             HHTTTCHH-HHHHHHHHHSGGGTHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHTTCC--CHHHHHHHHHHH
T ss_pred             HHHcCCCH-HHHHHHHhcCCchhHHHhhhHhhcCCCCcccc---hHHHHHHHHHHHHHcCCC--cHHHHHHHHHHH
Confidence            99999999 6888887542  11    111222  233333   489999999999999998  677776665443

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.94  E-value=3.1e-26  Score=227.71  Aligned_cols=246  Identities=10%  Similarity=0.082  Sum_probs=186.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +|||+|||+|.||.+||..|+++  |++|++||+++++++.+.+.                   +...++++++++++||
T Consensus         9 ~~~IgiIG~G~mG~~~A~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~e~~~~aD   67 (306)
T 3l6d_A            9 EFDVSVIGLGAMGTIMAQVLLKQ--GKRVAIWNRSPGKAAALVAA-------------------GAHLCESVKAALSASP   67 (306)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHH-------------------TCEECSSHHHHHHHSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHC-------------------CCeecCCHHHHHhcCC
Confidence            36899999999999999999998  99999999999999887641                   2466788999899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHH--HHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR--MIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~--~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      +||+|||++.              .+++++.  .+.. +.++++||++||+.|.+++.+.+.+++.+    ..++.+|..
T Consensus        68 vVi~~vp~~~--------------~~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g----~~~vdapv~  128 (306)
T 3l6d_A           68 ATIFVLLDNH--------------ATHEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAG----GHYVKGMIV  128 (306)
T ss_dssp             EEEECCSSHH--------------HHHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTT----CEEEEEEEE
T ss_pred             EEEEEeCCHH--------------HHHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEecccc
Confidence            9999998642              2455554  5544 46899999999999999999988887654    233455554


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEe--CC-hhHHHHhhhHHhHHHHHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIIT--TN-LWSAELSKLAANAFLAQRISSVNAMSA  235 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~--~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~  235 (480)
                      ..+...-..   ...+++|++     ++.+++++++|+.++. ..+++  ++ ++.++++|    .+.+.++++++|...
T Consensus       129 g~~~~~~~~---~~~i~~gg~-----~~~~~~~~~ll~~lg~-~~~~~~~g~~~g~g~~~k----~~~~~~~~~~~Ea~~  195 (306)
T 3l6d_A          129 AYPRNVGHR---ESHSIHTGD-----REAFEQHRALLEGLAG-HTVFLPWDEALAFATVLH----AHAFAAMVTFFEAVG  195 (306)
T ss_dssp             SCGGGTTCT---TCEEEEEEC-----HHHHHHHHHHHHTTCS-EEEECCHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred             cCcccccCC---ceEEEEcCC-----HHHHHHHHHHHHHhcC-CEEEecCCCCccHHHHHH----HHHHHHHHHHHHHHH
Confidence            332111110   115778885     7899999999999853 34555  44 78999999    455678999999999


Q ss_pred             HHHHhCCCHHHHHHHhcCCC--CC-------CCccc--cCCC-CCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHH
Q 011654          236 LCEATGADVTQVSHAIGKDT--RI-------GPRFL--NSSV-GFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK  301 (480)
Q Consensus       236 l~~~~Gid~~~v~~~~~~~~--~~-------~~~~~--~pg~-g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~  301 (480)
                      +|++.|+|++++.++++...  ..       +..++  ...+ +|...|+.||+.++++.+++.|++  .++.+.+.+
T Consensus       196 la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~KDl~~~~~~a~~~g~~--~p~~~~~~~  271 (306)
T 3l6d_A          196 AGDRFGLPVSKTARLLLETSRFFVADALEEAVRRLETQDFKGDQARLDVHADAFAHIAQSLHAQGVW--TPVFDAVCQ  271 (306)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCTTSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHcCCC--chHHHHHHH
Confidence            99999999999999987642  11       11122  1233 368899999999999999999998  677666544

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.94  E-value=4.4e-25  Score=223.45  Aligned_cols=246  Identities=15%  Similarity=0.186  Sum_probs=194.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC--
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA--   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a--   79 (480)
                      |||+|||+|.||.+||..|+++  |++|++||+++++++.+.+.                   ++..+++++++++.+  
T Consensus        23 mkIgiIGlG~mG~~~A~~L~~~--G~~V~v~dr~~~~~~~l~~~-------------------g~~~~~s~~e~~~~a~~   81 (358)
T 4e21_A           23 MQIGMIGLGRMGADMVRRLRKG--GHECVVYDLNVNAVQALERE-------------------GIAGARSIEEFCAKLVK   81 (358)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTT-------------------TCBCCSSHHHHHHHSCS
T ss_pred             CEEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHC-------------------CCEEeCCHHHHHhcCCC
Confidence            7999999999999999999998  99999999999999988863                   244567888888888  


Q ss_pred             -cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           80 -DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        80 -DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                       |+||+|||++               .++++++++.+.++++++||+.||+.|.+++++.+.+.+.+    +.++.+|..
T Consensus        82 ~DvVi~~vp~~---------------~v~~vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g----~~~vdapVs  142 (358)
T 4e21_A           82 PRVVWLMVPAA---------------VVDSMLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQG----ITYVDVGTS  142 (358)
T ss_dssp             SCEEEECSCGG---------------GHHHHHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTT----CEEEEEEEE
T ss_pred             CCEEEEeCCHH---------------HHHHHHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCC----CEEEeCCCC
Confidence             9999999864               25778899999999999999999999999998888777654    233455655


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCC-------------------CCeEEeCChhHHHHhhhHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVP-------------------EDRIITTNLWSAELSKLAA  219 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~v~~~~~~~ae~~Kl~~  219 (480)
                      ..+..+...    +.+++|++     ++++++++++|+.++.                   ...+++++.++++++|+++
T Consensus       143 Gg~~~a~~G----~~im~GG~-----~~a~~~~~~ll~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~g~~~Kl~~  213 (358)
T 4e21_A          143 GGIFGLERG----YCLMIGGE-----KQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMVH  213 (358)
T ss_dssp             CGGGHHHHC----CEEEEESC-----HHHHHHTHHHHHHHSCCGGGSCCCTTGGGCCSSGGGTEEEEESTTHHHHHHHHH
T ss_pred             CCHHHHhcC----CeeeecCC-----HHHHHHHHHHHHHhccccccCcccccccccccccccceEEECCccHHHHHHHHH
Confidence            444333322    15888986     7899999999999872                   1356678899999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHh------------------------CCCHHHHHHHhcCCCCCCCccc---------cCCC
Q 011654          220 NAFLAQRISSVNAMSALCEAT------------------------GADVTQVSHAIGKDTRIGPRFL---------NSSV  266 (480)
Q Consensus       220 N~~~~~~ia~~nE~~~l~~~~------------------------Gid~~~v~~~~~~~~~~~~~~~---------~pg~  266 (480)
                      |.+.+.++++++|...++++.                        |+|..++.+.++.++.+++.++         +|+.
T Consensus       214 n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~g~~~~s~~l~~~~~~~~~~p~~  293 (358)
T 4e21_A          214 NGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITEVWRRGSVISSWLLDLSATALLDSPDL  293 (358)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCC--------------CGGGCCCCCCHHHHHHHHTTTSTTCBHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhcccCCCHHHHHHHHhCccHHHHHHHHHHHHHHhhCCCh
Confidence            999999999999999999998                        8999999999998764433222         3433


Q ss_pred             -CCcccchhhhH---HHHHHHHHHcCCchhhhHHHHHH
Q 011654          267 -GFGGSCFQKDI---LNLVYICECNGLTEVANYWKQVI  300 (480)
Q Consensus       267 -g~gg~cl~kD~---~~l~~~a~~~g~~~~~~~~~~~~  300 (480)
                       .|.+.  .+|.   +..+..|.+.|++  .+++.++.
T Consensus       294 ~~~~~~--~~d~g~~r~~~~~A~~~gvp--~p~~~~al  327 (358)
T 4e21_A          294 QEFQGR--VSDSGEGRWTVAAAIDEGVP--AHVLSSAL  327 (358)
T ss_dssp             TTC--C--CCCCSHHHHHHHHHHHHTCC--CHHHHHHH
T ss_pred             HHHHHH--HHhcCcHHHHHHHHHHcCCC--hHHHHHHH
Confidence             13322  3444   5678889999999  67776554

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=99.94  E-value=7.9e-25  Score=216.50  Aligned_cols=250  Identities=18%  Similarity=0.224  Sum_probs=194.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||..+|..|++.  |++|++||+++++.+.+.+.                   ++..+++++++++++|+
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~D~   64 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRNPEAIADVIAA-------------------GAETASTAKAIAEQCDV   64 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEECSSHHHHHHHCSE
T ss_pred             ceEEEECchHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHC-------------------CCeecCCHHHHHhCCCE
Confidence            6999999999999999999998  89999999999998887752                   24567788888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      ||+|+|++.              .++.++   +++.+.++++++|++.|+..+.+.+.+.+.+.+.+    +.++.+|..
T Consensus        65 vi~~v~~~~--------------~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g----~~~~~~pv~  126 (299)
T 1vpd_A           65 IITMLPNSP--------------HVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKG----VEMLDAPVS  126 (299)
T ss_dssp             EEECCSSHH--------------HHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTT----CEEEECCEE
T ss_pred             EEEECCCHH--------------HHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEEecCC
Confidence            999998642              245566   57778889999999999988888888888877643    234456765


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE  238 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~  238 (480)
                      ..+..+...   ...+++|++     ++..+.++++|+.++. ..++..+.+.+.+.|+++|.+.++.+++++|+..+++
T Consensus       127 ~~~~~~~~~---~~~~~~~~~-----~~~~~~~~~ll~~~g~-~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~Ea~~l~~  197 (299)
T 1vpd_A          127 GGEPKAIDG---TLSVMVGGD-----KAIFDKYYDLMKAMAG-SVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLAT  197 (299)
T ss_dssp             SHHHHHHHT---CEEEEEESC-----HHHHHHHHHHHHTTEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHhHHhcC---CEEEEeCCC-----HHHHHHHHHHHHHHcC-CeEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443322221   114666763     7889999999998852 2345568999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHhcCCCCCC-------Cccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHH
Q 011654          239 ATGADVTQVSHAIGKDTRIG-------PRFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK  301 (480)
Q Consensus       239 ~~Gid~~~v~~~~~~~~~~~-------~~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~  301 (480)
                      +.|+|.+++.+++.....-+       +.++  ...+|+...++.||+.++.++++++|++  .++.+.+.+
T Consensus       198 ~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~~~~  267 (299)
T 1vpd_A          198 KAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQ--LPLTAAVME  267 (299)
T ss_dssp             HTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHccCCCCHHHHHhhhHhhcCCCCCCCChHHHHHHHHHHHHHHHHcCCC--ChHHHHHHH
Confidence            99999999999987653110       1111  1246788899999999999999999998  566554443

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=99.93  E-value=6.7e-25  Score=216.49  Aligned_cols=252  Identities=18%  Similarity=0.161  Sum_probs=194.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ||||+|||+|.||..+|..|++.  |++|++|| ++++.+.+.+.                   ++..+++++++++++|
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~-~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~D   60 (295)
T 1yb4_A            3 AMKLGFIGLGIMGSPMAINLARA--GHQLHVTT-IGPVADELLSL-------------------GAVNVETARQVTEFAD   60 (295)
T ss_dssp             -CEEEECCCSTTHHHHHHHHHHT--TCEEEECC-SSCCCHHHHTT-------------------TCBCCSSHHHHHHTCS
T ss_pred             CCEEEEEccCHHHHHHHHHHHhC--CCEEEEEc-CHHHHHHHHHc-------------------CCcccCCHHHHHhcCC
Confidence            58999999999999999999998  99999999 98888777652                   2334567888889999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHH---HHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR---MIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      +||+|||.+.              .+..++.   ++.+.++++++|++.|+..+.+.+.+.+.+.+.+    +.++.+|.
T Consensus        61 ~vi~~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g----~~~~~~p~  122 (295)
T 1yb4_A           61 IIFIMVPDTP--------------QVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEMG----ADYLDAPV  122 (295)
T ss_dssp             EEEECCSSHH--------------HHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTTT----EEEEECCE
T ss_pred             EEEEECCCHH--------------HHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEEccC
Confidence            9999998642              2455665   6777788899999999888888888888777632    34456776


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      ..++..+..+   ...+++|++     ++..+.++++|+.++. ..++..+.+.+.+.|+++|.+.++.+++++|+..++
T Consensus       123 ~~~~~~a~~g---~~~~~~~~~-----~~~~~~~~~ll~~~g~-~~~~~~~~~~~~~~Kl~~n~~~~~~~~~~~E~~~l~  193 (295)
T 1yb4_A          123 SGGEIGAREG---TLSIMVGGE-----QKVFDRVKPLFDILGK-NITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFA  193 (295)
T ss_dssp             ESHHHHHHHT---CEEEEEESC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHcC---CeEEEECCC-----HHHHHHHHHHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6554322221   113566763     7889999999999852 235556889999999999999999999999999999


Q ss_pred             HHhCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHHH
Q 011654          238 EATGADVTQVSHAIGKDTRIGP-------RFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKVN  303 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~N  303 (480)
                      ++.|+|.+++.+++.....-++       .++  ...+|+...++.||+.++++.+++.|++  .++.+++.+..
T Consensus       194 ~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~g~~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~~  266 (295)
T 1yb4_A          194 SKAGADPVRVRQALMGGFASSRILEVHGERMINRTFEPGFKIALHQKDLNLALQSAKALALN--LPNTATCQELF  266 (295)
T ss_dssp             HHTTCCHHHHHHHHTSSSSCBHHHHHHHHHHHTTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHcCCCCCHHHHHhhHHHhcCCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHHH
Confidence            9999999999999986542111       111  2346788899999999999999999998  66666555443

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=99.92  E-value=3.3e-24  Score=211.68  Aligned_cols=249  Identities=14%  Similarity=0.143  Sum_probs=188.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||.++|..|++.  |++|++||+++++++.+.+.                   +++.+++++++++++|+
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~Dv   59 (296)
T 2gf2_A            1 MPVGFIGLGNMGNPMAKNLMKH--GYPLIIYDVFPDACKEFQDA-------------------GEQVVSSPADVAEKADR   59 (296)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHT--TCCEEEECSSTHHHHHHHTT-------------------TCEECSSHHHHHHHCSE
T ss_pred             CeEEEEeccHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCeecCCHHHHHhcCCE
Confidence            7999999999999999999998  99999999999999888752                   35567888888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHH---HHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARM---IANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~---i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      ||+|||.+.              .++.++.+   +.+.++++++|++.|++++.+.+.+.+.+.+.+    ..+..+|..
T Consensus        60 vi~~vp~~~--------------~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~~g----~~~~~~p~~  121 (296)
T 2gf2_A           60 IITMLPTSI--------------NAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMG----AVFMDAPVS  121 (296)
T ss_dssp             EEECCSSHH--------------HHHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCEE
T ss_pred             EEEeCCCHH--------------HHHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CEEEEcCCC
Confidence            999998642              23555554   345678899999988999988888877776542    233456765


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE  238 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~  238 (480)
                      .++..+....   ..+++|++     ++..+.++++|+.++. ..++....+.+.+.|+++|.+.++.+++++|+..+++
T Consensus       122 ~g~~~a~~~~---~~~~~~~~-----~~~~~~v~~l~~~~g~-~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~~~~  192 (296)
T 2gf2_A          122 GGVGAARSGN---LTFMVGGV-----EDEFAAAQELLGCMGS-NVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGI  192 (296)
T ss_dssp             SHHHHHHHTC---EEEEEESC-----GGGHHHHHHHHTTTEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhHHhcCc---EEEEeCCC-----HHHHHHHHHHHHHHcC-CeEEeCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4432111111   13566654     6788899999998852 2344567789999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHhcCCCCCC---------Cccc-------cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHH
Q 011654          239 ATGADVTQVSHAIGKDTRIG---------PRFL-------NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI  300 (480)
Q Consensus       239 ~~Gid~~~v~~~~~~~~~~~---------~~~~-------~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~  300 (480)
                      +.|+|.+++.++++.....+         +..+       +..+||...++.||+.+++++++++|++  .++.+.+.
T Consensus       193 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~~~  268 (296)
T 2gf2_A          193 RLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSP--ILLGSLAH  268 (296)
T ss_dssp             HTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred             HcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCchHHHHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence            99999999999887532100         0111       2235688899999999999999999998  66555443

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=99.92  E-value=3.4e-23  Score=204.90  Aligned_cols=250  Identities=16%  Similarity=0.185  Sum_probs=193.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||..+|..|++.  |++|++||+++++.+.+.+.                   ++..+++++++++++|+
T Consensus         5 ~~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~D~   63 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINLLKE--GVTVYAFDLMEANVAAVVAQ-------------------GAQACENNQKVAAASDI   63 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHHHHT--TCEEEEECSSHHHHHHHHTT-------------------TCEECSSHHHHHHHCSE
T ss_pred             CEEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHC-------------------CCeecCCHHHHHhCCCE
Confidence            7999999999999999999998  99999999999999888752                   24566788888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHH---HHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR---MIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~---~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      ||+|||.+.              .++.++.   ++.+.++++++|++.|+..+++.+.+.+.+.+.+    +.++.+|..
T Consensus        64 vi~~vp~~~--------------~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g----~~~~~~p~~  125 (301)
T 3cky_A           64 IFTSLPNAG--------------IVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKG----IDYVDAPVS  125 (301)
T ss_dssp             EEECCSSHH--------------HHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTT----CEEEECCEE
T ss_pred             EEEECCCHH--------------HHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEEEccCC
Confidence            999998642              2456664   7778889999999988888888888888776643    234467765


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE  238 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~  238 (480)
                      ..+..+...   ...+++|++     ++..+.++++|+.++. ..++.++.+.+.+.|++.|.+.++.+++++|+..+++
T Consensus       126 ~~~~~a~~g---~~~~~~~g~-----~~~~~~v~~ll~~~g~-~~~~~~~~g~~~~~Kl~~N~~~~~~~~~~~Ea~~l~~  196 (301)
T 3cky_A          126 GGTKGAEAG---TLTIMVGAS-----EAVFEKIQPVLSVIGK-DIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGV  196 (301)
T ss_dssp             SHHHHHHHT---CEEEEEESC-----HHHHHHHHHHHHHHEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHcC---CeEEEECCC-----HHHHHHHHHHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            443211111   113566663     7789999999998852 2345678899999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHhcCCCC-------CCC-ccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHH
Q 011654          239 ATGADVTQVSHAIGKDTR-------IGP-RFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK  301 (480)
Q Consensus       239 ~~Gid~~~v~~~~~~~~~-------~~~-~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~  301 (480)
                      +.|+|.+++.+++.....       ..+ .++  ...+|+...++.||+.++++.++++|++  .++.+.+.+
T Consensus       197 ~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~~~~  267 (301)
T 3cky_A          197 KCGLKPETMQEIIGKSSGRSYAMEAKMEKFIMSGDFAGGFAMDLQHKDLGLALEAGKEGNVP--LPMTAMATQ  267 (301)
T ss_dssp             HTTCCHHHHHHHHHTSTTCBHHHHHHCCCCCCTCCCSSSSBHHHHHHHHHHHHHHHHHHTCC--CHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHcCCCCCHHHHHhhhhhhhcCCCCCCccHHHHHHHHHHHHHHHHHhCCC--ChHHHHHHH
Confidence            999999999998875421       112 222  2345778899999999999999999998  666555443

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=99.92  E-value=7.1e-24  Score=214.64  Aligned_cols=277  Identities=14%  Similarity=0.143  Sum_probs=200.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC-CCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG-DQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|+||+++|..|+++  |++|++||+++++++.+++ +.++.+.|++.      ...++++++|++++++++|
T Consensus        30 mkI~VIGaG~mG~alA~~La~~--G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~------l~~~i~~t~d~~ea~~~aD  101 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARK--GQKVRLWSYESDHVDEMQAEGVNNRYLPNYP------FPETLKAYCDLKASLEGVT  101 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTT--TCCEEEECSCHHHHHHHHHHSSBTTTBTTCC------CCTTEEEESCHHHHHTTCC
T ss_pred             CeEEEECccHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHHcCCCcccCCCCc------cCCCeEEECCHHHHHhcCC
Confidence            7999999999999999999998  9999999999999999986 45555666643      1356889999998899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-CccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      +||+|||+               ..++++++++.++++++++|+..++ +.+++ +.+.+.+++..++..+.+.++|++.
T Consensus       102 vVilaVp~---------------~~~~~vl~~i~~~l~~~~ivvs~~kGi~~~t-~~~se~i~~~l~~~~~~vlsgP~~a  165 (356)
T 3k96_A          102 DILIVVPS---------------FAFHEVITRMKPLIDAKTRIAWGTKGLAKGS-RLLHEVVATELGQVPMAVISGPSLA  165 (356)
T ss_dssp             EEEECCCH---------------HHHHHHHHHHGGGCCTTCEEEECCCSCBTTT-BCHHHHHHHHHCSCCEEEEESSCCH
T ss_pred             EEEECCCH---------------HHHHHHHHHHHHhcCCCCEEEEEeCCCCcCc-cCHHHHHHHHcCCCCEEEEECccHH
Confidence            99999985               2478899999999999998887654 77777 6677777654323457788999988


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeE-EeCChhHHHHh-----------------hhHHhH
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRI-ITTNLWSAELS-----------------KLAANA  221 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v-~~~~~~~ae~~-----------------Kl~~N~  221 (480)
                      .+...    ..|..+++++.    +++..+.++++|+...  .++ ...|+..+|+.                 |+..|+
T Consensus       166 ~ev~~----g~pt~~via~~----~~~~~~~v~~lf~~~~--~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~  235 (356)
T 3k96_A          166 TEVAA----NLPTAVSLASN----NSQFSKDLIERLHGQR--FRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNA  235 (356)
T ss_dssp             HHHHT----TCCEEEEEEES----CHHHHHHHHHHHCCSS--EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHc----CCCeEEEEecC----CHHHHHHHHHHhCCCC--eeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchH
Confidence            76542    34556777876    5788999999999753  344 45788888875                 677788


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCC-------CCCCccc---cCCCCCc----------ccchhhhHHHHH
Q 011654          222 FLAQRISSVNAMSALCEATGADVTQVSHAIGKDT-------RIGPRFL---NSSVGFG----------GSCFQKDILNLV  281 (480)
Q Consensus       222 ~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~-------~~~~~~~---~pg~g~g----------g~cl~kD~~~l~  281 (480)
                      ..++.+.+++|+.++|+++|+|++++.+..+..-       ..+.++-   .-|-|..          ----.++...+.
T Consensus       236 ~aal~~~~l~E~~~l~~a~G~~~~t~~gl~g~gDl~~tc~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~  315 (356)
T 3k96_A          236 RAALITRGLTEMGRLVSVFGGKQETLTGLAGLGDLVLTCTDNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVH  315 (356)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCChHhhcccchhhHHHHhccCCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHH
Confidence            8999999999999999999999998886543210       0111110   0000000          001124566777


Q ss_pred             HHHHHcCCchhhhHHHHHHHH--HHHhHHHHHHHH
Q 011654          282 YICECNGLTEVANYWKQVIKV--NDYQKNRFVNRI  314 (480)
Q Consensus       282 ~~a~~~g~~~~~~~~~~~~~~--N~~~~~~~~~~~  314 (480)
                      .+++++|++  .|+.+++-++  ++.-|...++.+
T Consensus       316 ~la~~~~v~--~Pi~~~v~~il~~~~~~~~~~~~l  348 (356)
T 3k96_A          316 ALAQKHAIE--MPLTFQVHRILHEDLDPQQAVQEL  348 (356)
T ss_dssp             HHHHHTTCC--CHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHcCCC--CcHHHHHHHHHhCCCCHHHHHHHH
Confidence            778888876  6666665543  334455444444

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.91  E-value=9.2e-24  Score=220.75  Aligned_cols=207  Identities=11%  Similarity=0.146  Sum_probs=168.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc---
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA---   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~---   77 (480)
                      +|+|+|||+|.||.+||.+|+++  ||+|++||+++++++.+.+....              ..++..+++++++++   
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~g~~--------------g~~i~~~~s~~e~v~~l~   67 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAK--------------GTKVVGAQSLKEMVSKLK   67 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTT--------------TSSCEECSSHHHHHHTBC
T ss_pred             CCEEEEEChhHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHhcccC--------------CCceeccCCHHHHHhhcc
Confidence            58999999999999999999998  99999999999999988753210              124566788888776   


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      ++|+||+|||++              ..++++++++.+.++++++||+.||+.+.+++++.+.+.+.+    +.++.+|.
T Consensus        68 ~aDvVil~Vp~~--------------~~v~~vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~G----i~fvd~pV  129 (484)
T 4gwg_A           68 KPRRIILLVKAG--------------QAVDDFIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKG----ILFVGSGV  129 (484)
T ss_dssp             SSCEEEECSCSS--------------HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEEEEE
T ss_pred             CCCEEEEecCCh--------------HHHHHHHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhc----cccccCCc
Confidence            599999999864              245778899999999999999999999988888877777654    23445565


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCe-------EEeCChhHHHHhhhHHhHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDR-------IITTNLWSAELSKLAANAFLAQRISSV  230 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~-------v~~~~~~~ae~~Kl~~N~~~~~~ia~~  230 (480)
                      ..++..+..    .+.+++||+     ++++++++++|+.+.. ..       +++++.++++.+|+++|.+.+..++++
T Consensus       130 sGg~~gA~~----G~~im~GG~-----~ea~~~v~pll~~ig~-~v~~~~~~~~~~G~~Gag~~vKmv~N~i~~~~m~~i  199 (484)
T 4gwg_A          130 SGGEEGARY----GPSLMPGGN-----KEAWPHIKTIFQGIAA-KVGTGEPCCDWVGDEGAGHFVKMVHNGIEYGDMQLI  199 (484)
T ss_dssp             ESHHHHHHH----CCEEEEEEC-----GGGHHHHHHHHHHHSC-BCTTSCBSBCCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHhc----CCeeecCCC-----HHHHHHHHHHHHHhcC-cccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHH
Confidence            544433322    226888986     6789999999999864 22       456788999999999999999999999


Q ss_pred             HHHHHHHHH-hCCCHHHHHHHh
Q 011654          231 NAMSALCEA-TGADVTQVSHAI  251 (480)
Q Consensus       231 nE~~~l~~~-~Gid~~~v~~~~  251 (480)
                      +|+..++++ +|+|++++.+++
T Consensus       200 aEa~~l~~~~~Gld~~~l~~v~  221 (484)
T 4gwg_A          200 CEAYHLMKDVLGMAQDEMAQAF  221 (484)
T ss_dssp             HHHHHHHHHTSCCCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHH
Confidence            999999999 999999998886

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=99.91  E-value=3.3e-23  Score=206.60  Aligned_cols=249  Identities=14%  Similarity=0.118  Sum_probs=188.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||.++|..|++.  |++|++||+++++.+.+.+.                   ++..++++.++++++|+
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~~~~~~~~~~Dv   89 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKM--GHTVTVWNRTAEKCDLFIQE-------------------GARLGRTPAEVVSTCDI   89 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT--TCCEEEECSSGGGGHHHHHT-------------------TCEECSCHHHHHHHCSE
T ss_pred             CeEEEEcccHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHc-------------------CCEEcCCHHHHHhcCCE
Confidence            7899999999999999999998  89999999999988777642                   24556788888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHH---HhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMI---ANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i---~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      ||+|||++.              .++.++..+   .+.++++++|++.|++.+.+.+.+.+.+.+.+    ..++.+|..
T Consensus        90 Vi~av~~~~--------------~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~----~~~v~~p~~  151 (316)
T 2uyy_A           90 TFACVSDPK--------------AAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRG----GRFLEAPVS  151 (316)
T ss_dssp             EEECCSSHH--------------HHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCEE
T ss_pred             EEEeCCCHH--------------HHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CEEEEcCcc
Confidence            999998642              245555543   36788899999999988888888887776532    234455644


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCE  238 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~  238 (480)
                      ..+......   ...+++|++     ++..+.++++|+.++. ..++..+++.+.+.|++.|.+....+++++|+..+++
T Consensus       152 g~~~~~~~g---~~~~~~~g~-----~~~~~~v~~ll~~~g~-~~~~~~~~~~~~~~K~~~n~~~~~~~~~~~Ea~~la~  222 (316)
T 2uyy_A          152 GNQQLSNDG---MLVILAAGD-----RGLYEDCSSCFQAMGK-TSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQ  222 (316)
T ss_dssp             SCHHHHHHT---CEEEEEEEC-----HHHHHHTHHHHHHHEE-EEEECSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhHHhhC---CEEEEeCCC-----HHHHHHHHHHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322211111   113556774     6788999999999852 2334458999999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHH
Q 011654          239 ATGADVTQVSHAIGKDTRIGP-------RFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVI  300 (480)
Q Consensus       239 ~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~  300 (480)
                      +.|++.+++.++++....-++       .++  ...+|+...++.||..++++++++.|++  .++.+.+.
T Consensus       223 ~~G~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~v~  291 (316)
T 2uyy_A          223 VTGQSQQTLLDILNQGQLASIFLDQKCQNILQGNFKPDFYLKYIQKDLRLAIALGDAVNHP--TPMAAAAN  291 (316)
T ss_dssp             HTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHTCCCCSSBHHHHHHHHHHHHHHHHHTTCC--CHHHHHHH
T ss_pred             HcCCCHHHHHHHHHcCCCCCHHHHHhhHHhhcCCCCCCCcHHHHHHHHHHHHHHHHHhCCC--ChHHHHHH
Confidence            999999999998875431111       111  2456788899999999999999999998  56555443

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=99.91  E-value=4.3e-23  Score=202.79  Aligned_cols=249  Identities=16%  Similarity=0.154  Sum_probs=188.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ||||+|||+|.||..+|..|++   |++|++||+++++.+.+.+.                   ++..++ +.++++++|
T Consensus         1 M~~i~iiG~G~~G~~~a~~l~~---g~~V~~~~~~~~~~~~~~~~-------------------g~~~~~-~~~~~~~~D   57 (289)
T 2cvz_A            1 MEKVAFIGLGAMGYPMAGHLAR---RFPTLVWNRTFEKALRHQEE-------------------FGSEAV-PLERVAEAR   57 (289)
T ss_dssp             -CCEEEECCSTTHHHHHHHHHT---TSCEEEECSSTHHHHHHHHH-------------------HCCEEC-CGGGGGGCS
T ss_pred             CCeEEEEcccHHHHHHHHHHhC---CCeEEEEeCCHHHHHHHHHC-------------------CCcccC-HHHHHhCCC
Confidence            6899999999999999999986   68999999999988877642                   122334 566788999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      +||+|||++.              .+..+++++.+.++++++|++.|+..+.+.+.+.+.+.+.+    ..++.+|....
T Consensus        58 ~vi~~v~~~~--------------~~~~v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g----~~~~~~p~~~~  119 (289)
T 2cvz_A           58 VIFTCLPTTR--------------EVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKG----VTYLDAPVSGG  119 (289)
T ss_dssp             EEEECCSSHH--------------HHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTT----EEEEECCEESH
T ss_pred             EEEEeCCChH--------------HHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcC----CEEEEecCCCC
Confidence            9999998642              24667788888889999999999988888888888776542    34455675433


Q ss_pred             ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHh
Q 011654          161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT  240 (480)
Q Consensus       161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~  240 (480)
                      +..+...   ...+++|++     ++..+.++++| .++. ..++..+.+.+.+.|++.|.+..+.+++++|+..++++.
T Consensus       120 ~~~~~~g---~~~~~~~~~-----~~~~~~~~~ll-~~g~-~~~~~~~~~~~~~~k~~~n~~~~~~~~~~~Ea~~l~~~~  189 (289)
T 2cvz_A          120 TSGAEAG---TLTVMLGGP-----EEAVERVRPFL-AYAK-KVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQ  189 (289)
T ss_dssp             HHHHHHT---CEEEEEESC-----HHHHHHHGGGC-TTEE-EEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHhhC---CeEEEECCC-----HHHHHHHHHHH-hhcC-CeEEcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3211111   113556653     78889999999 8742 235667889999999999999999999999999999999


Q ss_pred             CCCHHHHHHHhcCCCC-------CCC-ccc--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHHH
Q 011654          241 GADVTQVSHAIGKDTR-------IGP-RFL--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIKV  302 (480)
Q Consensus       241 Gid~~~v~~~~~~~~~-------~~~-~~~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~~  302 (480)
                      |+|.+++.+++.....       .++ .++  ...+|+...++.||+.++++.++++|++  .++.+++.+.
T Consensus       190 G~~~~~~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~g~~~~~~~kd~~~~~~~a~~~gv~--~p~~~~v~~~  259 (289)
T 2cvz_A          190 GVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLGIAMGVLDGEKAP--SPLLRLAREV  259 (289)
T ss_dssp             TCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHHHHHHHHTTTCCC--CHHHHHHHHH
T ss_pred             CcCHHHHHHHHHccCCCCHHHHHhccchhhcCCCCCCcChHHHHHHHHHHHHHHHHcCCC--ChHHHHHHHH
Confidence            9999999999876431       111 122  2346778889999999999999999998  6666554443

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=99.89  E-value=2.9e-22  Score=211.12  Aligned_cols=251  Identities=11%  Similarity=0.073  Sum_probs=187.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc---
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE---   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~---   78 (480)
                      .+|+|||+|.||.+||..|+++  |++|++||+++++++.++++..+    +          .+++.+++++++++.   
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~----~----------~gi~~~~s~~e~v~~l~~   74 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADH--GFTVCAYNRTQSKVDHFLANEAK----G----------KSIIGATSIEDFISKLKR   74 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSHHHHHHHHTTTT----T----------SSEECCSSHHHHHHTSCS
T ss_pred             CCEEEEeeHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHccccc----C----------CCeEEeCCHHHHHhcCCC
Confidence            4799999999999999999998  99999999999999998863211    0          247778899887776   


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      +|+||+|||++              ..++++++++.+.++++++||+.||..+.+++++.+.+++.+    +.++.+|..
T Consensus        75 aDvVil~Vp~~--------------~~v~~vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g----~~~v~~pVs  136 (497)
T 2p4q_A           75 PRKVMLLVKAG--------------APVDALINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKG----ILFVGSGVS  136 (497)
T ss_dssp             SCEEEECCCSS--------------HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEEEEEE
T ss_pred             CCEEEEEcCCh--------------HHHHHHHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcC----CceeCCCcc
Confidence            99999999864              246788899999999999999999998888888877777643    222344544


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCC------eEEeCChhHHHHhhhHHhHHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPED------RIITTNLWSAELSKLAANAFLAQRISSVNA  232 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE  232 (480)
                      ..+..+..    .+.+++|++     +++.+.++++|+.++. .      .++.+..+.+.++|+++|.+.+..+++++|
T Consensus       137 gg~~~a~~----G~~im~gg~-----~e~~~~v~~ll~~~g~-~~dGe~~v~~vg~~G~g~~~Kl~~N~~~~~~~~~laE  206 (497)
T 2p4q_A          137 GGEEGARY----GPSLMPGGS-----EEAWPHIKNIFQSISA-KSDGEPCCEWVGPAGAGHYVKMVHNGIEYGDMQLICE  206 (497)
T ss_dssp             SHHHHHHH----CCEEEEEEC-----GGGHHHHHHHHHHHSC-EETTEESCCCCEETTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cChhHhhc----CCeEEecCC-----HHHHHHHHHHHHHhcC-ccCCCCceEEECCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            43322221    225778875     6789999999999863 2      245566889999999999999999999999


Q ss_pred             HHHHHHH-hCCCHHHHHHHhc---CCCCCCC------c-cc--cCCCCCcccchh-----hhHH-HHHHHHHHcCCchhh
Q 011654          233 MSALCEA-TGADVTQVSHAIG---KDTRIGP------R-FL--NSSVGFGGSCFQ-----KDIL-NLVYICECNGLTEVA  293 (480)
Q Consensus       233 ~~~l~~~-~Gid~~~v~~~~~---~~~~~~~------~-~~--~pg~g~gg~cl~-----kD~~-~l~~~a~~~g~~~~~  293 (480)
                      +..++++ +|+|++++.+++.   ....-++      . +.  .+..++-...+.     ||+. .....+++.|++  .
T Consensus       207 a~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~~l~~~d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~--~  284 (497)
T 2p4q_A          207 AYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRDILKFDDVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMP--V  284 (497)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHHHHTCBCTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCC--C
T ss_pred             HHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHHHHhcCCCCCccHHHHHHHhhccchHHHHHHHHHHHcCCC--C
Confidence            9999999 6999999998883   2211000      0 01  111123444444     7765 567899999998  5


Q ss_pred             hHHHH
Q 011654          294 NYWKQ  298 (480)
Q Consensus       294 ~~~~~  298 (480)
                      +++..
T Consensus       285 P~~~~  289 (497)
T 2p4q_A          285 TLIGE  289 (497)
T ss_dssp             HHHHH
T ss_pred             chHHH
Confidence            55554

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=99.87  E-value=5.5e-21  Score=201.20  Aligned_cols=249  Identities=11%  Similarity=0.099  Sum_probs=182.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc---c
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA---E   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~---~   78 (480)
                      |||+|||+|.||.++|..|+++  |++|++||+++++++.++++..+    +          .++..+++++++++   +
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~~~----g----------~gi~~~~~~~e~v~~l~~   66 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAK----G----------TKVLGAHSLEEMVSKLKK   66 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTT----T----------SSCEECSSHHHHHHHBCS
T ss_pred             CeEEEEChHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHHHhcccc----C----------CCeEEeCCHHHHHhhccC
Confidence            7899999999999999999998  99999999999999998863211    1          13667888888764   8


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      +|+||+|||++              ..+.++++++.+.++++++||+.|+..+..++++.+.+++.+    +.++.+|..
T Consensus        67 aDvVilaVp~~--------------~~v~~vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g----~~~v~~pv~  128 (482)
T 2pgd_A           67 PRRIILLVKAG--------------QAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKG----ILFVGSGVS  128 (482)
T ss_dssp             SCEEEECSCTT--------------HHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEEEEEE
T ss_pred             CCEEEEeCCCh--------------HHHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcC----CeEeCCCCC
Confidence            99999999864              235778889999999999999988887777777777776643    223345544


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCe-------EEeCChhHHHHhhhHHhHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDR-------IITTNLWSAELSKLAANAFLAQRISSVN  231 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~-------v~~~~~~~ae~~Kl~~N~~~~~~ia~~n  231 (480)
                      ..+..+.    .++.+++|++     ++..+.++++|+.++. ..       .+.+..+.+.++|+++|.+.+..+.+++
T Consensus       129 g~~~~a~----~g~~i~~gg~-----~e~~~~v~~ll~~~g~-~v~d~~~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~  198 (482)
T 2pgd_A          129 GGEDGAR----YGPSLMPGGN-----KEAWPHIKAIFQGIAA-KVGTGEPCCDWVGDDGAGHFVKMVHNGIEYGDMQLIC  198 (482)
T ss_dssp             SHHHHHH----HCCEEEEEEC-----TTTHHHHHHHHHHHSC-BCTTSCBSCCCCEETTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhhhc----cCCeEEeCCC-----HHHHHHHHHHHHHhhh-hccCCCcceEEECCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            3332221    2225677875     5678899999998853 22       3445678899999999999999999999


Q ss_pred             HHHHHHHHh-CCCHHHHHHHhc---CCCCCCCc-------ccc---CCCCCcccch------hhhHHHHHHHHHHcCCch
Q 011654          232 AMSALCEAT-GADVTQVSHAIG---KDTRIGPR-------FLN---SSVGFGGSCF------QKDILNLVYICECNGLTE  291 (480)
Q Consensus       232 E~~~l~~~~-Gid~~~v~~~~~---~~~~~~~~-------~~~---pg~g~gg~cl------~kD~~~l~~~a~~~g~~~  291 (480)
                      |+..++++. |++.+++.+++.   ... .++.       .+.   +++++...-+      .+|...+...|+++|++ 
T Consensus       199 Ea~~l~~~~~G~~~~~~~~~~~~w~~g~-~~S~l~~~~~~~l~~~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~-  276 (482)
T 2pgd_A          199 EAYHLMKDVLGLGHKEMAKAFEEWNKTE-LDSFLIEITASILKFQDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVP-  276 (482)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHTTTT-TCBHHHHHHHHHHHCBCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCC-
T ss_pred             HHHHHHHhcCCcCHHHHHHHHHHhcCCC-cCchHHHHHhHHhhccCCCCCeeecccccccccccHHHHHHHHHHHcCCC-
Confidence            999999999 999999999884   221 1110       111   1112211111      24456788999999998 


Q ss_pred             hhhHHH
Q 011654          292 VANYWK  297 (480)
Q Consensus       292 ~~~~~~  297 (480)
                       .+++.
T Consensus       277 -~P~i~  281 (482)
T 2pgd_A          277 -VTLIG  281 (482)
T ss_dssp             -CHHHH
T ss_pred             -cchHH
Confidence             56553

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=99.87  E-value=1.6e-20  Score=197.26  Aligned_cols=254  Identities=15%  Similarity=0.104  Sum_probs=183.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC-CCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc--
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD-QLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE--   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~--   78 (480)
                      |||+|||+|.||.++|..|+++  |++|++||+++++++.+++. ...   +.         ..++..+++++++++.  
T Consensus         2 MkIgVIG~G~mG~~lA~~La~~--G~~V~v~dr~~~~~~~l~~~~g~~---~~---------~~~i~~~~~~~e~v~~l~   67 (478)
T 1pgj_A            2 MDVGVVGLGVMGANLALNIAEK--GFKVAVFNRTYSKSEEFMKANASA---PF---------AGNLKAFETMEAFAASLK   67 (478)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTTTS---TT---------GGGEEECSCHHHHHHHBC
T ss_pred             CEEEEEChHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHhcCCC---CC---------CCCeEEECCHHHHHhccc
Confidence            7999999999999999999998  99999999999999988752 111   10         0236788899887764  


Q ss_pred             -CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           79 -ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        79 -aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                       +|+||+|||++              ..+.++++++.+.++++++||+.|+..+..++++.+.+++.+  .  .++.+|.
T Consensus        68 ~aDvVilaVp~~--------------~~v~~vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g--~--~~v~~pv  129 (478)
T 1pgj_A           68 KPRKALILVQAG--------------AATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAG--L--RFLGMGI  129 (478)
T ss_dssp             SSCEEEECCCCS--------------HHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTT--C--EEEEEEE
T ss_pred             CCCEEEEecCCh--------------HHHHHHHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCC--C--eEEEeec
Confidence             99999999864              235778889999999999999988887777777777776543  1  2223443


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCC------eEEeCChhHHHHhhhHHhHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPED------RIITTNLWSAELSKLAANAFLAQRISSVN  231 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n  231 (480)
                      ...+..+.    ..+.+++|+.     ++..+.++++|+.++...      .++.++.+.+.++|+++|.+.+..+++++
T Consensus       130 ~gg~~~a~----~g~~i~~gg~-----~~~~~~v~~ll~~~g~~~~dg~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~  200 (478)
T 1pgj_A          130 SGGEEGAR----KGPAFFPGGT-----LSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWG  200 (478)
T ss_dssp             ESHHHHHH----HCCEEEEEEC-----HHHHHHHHHHHHHHSCBCTTSCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHh----cCCeEeccCC-----HHHHHHHHHHHHHhcccccCCCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHH
Confidence            32221111    1124777875     788999999999886310      34556788999999999999999999999


Q ss_pred             HHHHHHHHhCCCHHHHHHHhc----CCCC------CCCccc-cCC-CC-Ccccchh-----hhH-HHHHHHHHHcCCchh
Q 011654          232 AMSALCEATGADVTQVSHAIG----KDTR------IGPRFL-NSS-VG-FGGSCFQ-----KDI-LNLVYICECNGLTEV  292 (480)
Q Consensus       232 E~~~l~~~~Gid~~~v~~~~~----~~~~------~~~~~~-~pg-~g-~gg~cl~-----kD~-~~l~~~a~~~g~~~~  292 (480)
                      |+..+++++|++.+++.+++.    .+..      +....+ .-. .| +-...+.     ||+ ..+...|+++|++  
T Consensus       201 Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~~~~~~l~~~d~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~--  278 (478)
T 1pgj_A          201 EVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAAARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVP--  278 (478)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCC--
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHHHhhchhhhcCCCCChhHHHHHHHHhcCccHHHHHHHHHHHhCCC--
Confidence            999999999999999998875    2211      000111 111 12 2222222     454 5889999999998  


Q ss_pred             hhHHHH
Q 011654          293 ANYWKQ  298 (480)
Q Consensus       293 ~~~~~~  298 (480)
                      .+++++
T Consensus       279 ~Pi~~~  284 (478)
T 1pgj_A          279 APSLNM  284 (478)
T ss_dssp             CHHHHH
T ss_pred             ChHHHH
Confidence            677766

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=99.86  E-value=6.3e-21  Score=200.26  Aligned_cols=251  Identities=10%  Similarity=0.102  Sum_probs=185.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc---
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE---   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~---   78 (480)
                      |+|+|||+|.||.+||..|+++  |++|++||+++++++.+++...               ..+++.++++++++++   
T Consensus        16 ~~IgvIGlG~MG~~lA~~La~~--G~~V~v~~r~~~~~~~l~~~~~---------------~~gi~~~~s~~e~v~~l~~   78 (480)
T 2zyd_A           16 QQIGVVGMAVMGRNLALNIESR--GYTVSIFNRSREKTEEVIAENP---------------GKKLVPYYTVKEFVESLET   78 (480)
T ss_dssp             BSEEEECCSHHHHHHHHHHHTT--TCCEEEECSSHHHHHHHHHHST---------------TSCEEECSSHHHHHHTBCS
T ss_pred             CeEEEEccHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHhhCC---------------CCCeEEeCCHHHHHhCCCC
Confidence            6899999999999999999998  9999999999999998875210               0147788899888776   


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      +|+||+|||++.              .++++++++.+.++++++||+.|+..+..++++.+.+++.+    +.++.+|..
T Consensus        79 aDvVil~Vp~~~--------------~v~~vl~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g----~~~v~~pv~  140 (480)
T 2zyd_A           79 PRRILLMVKAGA--------------GTDAAIDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEG----FNFIGTGVS  140 (480)
T ss_dssp             SCEEEECSCSSS--------------HHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEEEEEE
T ss_pred             CCEEEEECCCHH--------------HHHHHHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCC----CCeeCCccc
Confidence            999999998642              35778889999999999999999988888777877777643    223345654


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCC-------eEEeCChhHHHHhhhHHhHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPED-------RIITTNLWSAELSKLAANAFLAQRISSVN  231 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~-------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n  231 (480)
                      .++..+...   + .+++|++     ++..+.++++|+.++. .       ..+.+..+.+.++|+++|.+.+..+..++
T Consensus       141 gg~~~a~~g---~-~i~~gg~-----~~~~~~v~~ll~~~g~-~~~dGe~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~la  210 (480)
T 2zyd_A          141 GGEEGALKG---P-SIMPGGQ-----KEAYELVAPILTKIAA-VAEDGEPCVTYIGADGAGHYVKMVHNGIEYGDMQLIA  210 (480)
T ss_dssp             SHHHHHHHC---C-EEEEESC-----HHHHHHHHHHHHHHSC-BCTTSCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCHhHHhcC---C-eEEecCC-----HHHHHHHHHHHHHHhc-cccCCCceEEEECCccHHHHHHHHHHHHHHHHHHHHH
Confidence            444322211   2 5778875     7899999999999863 2       34566789999999999999999999999


Q ss_pred             HHHHHHHH-hCCCHHHHHHHhc------CCCCC----CCccc--cCCCCCcccchh-----hhHH-HHHHHHHHcCCchh
Q 011654          232 AMSALCEA-TGADVTQVSHAIG------KDTRI----GPRFL--NSSVGFGGSCFQ-----KDIL-NLVYICECNGLTEV  292 (480)
Q Consensus       232 E~~~l~~~-~Gid~~~v~~~~~------~~~~~----~~~~~--~pg~g~gg~cl~-----kD~~-~l~~~a~~~g~~~~  292 (480)
                      |+..++++ +|+|++++.+++.      .++.+    +..+.  +++.|+...-+.     ||.. .....+++.|++  
T Consensus       211 Ea~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~--  288 (480)
T 2zyd_A          211 EAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKDIFTKKDEDGNYLVDVILDEAANKGTGKWTSQSALDLGEP--  288 (480)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHHHHHHCBCTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCC--
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHHHHHhcCCCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCC--
Confidence            99999999 7999999998872      12110    00000  122223222222     4433 667889999998  


Q ss_pred             hhHHHHH
Q 011654          293 ANYWKQV  299 (480)
Q Consensus       293 ~~~~~~~  299 (480)
                      .++...+
T Consensus       289 ~Pi~~~a  295 (480)
T 2zyd_A          289 LSLITES  295 (480)
T ss_dssp             CHHHHHH
T ss_pred             CchHHHH
Confidence            5655543

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=99.86  E-value=4.7e-21  Score=186.00  Aligned_cols=232  Identities=13%  Similarity=0.106  Sum_probs=164.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI--SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~--~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|||+|.||.++|..|+++  |++|++||+  ++++++.+.+.                   +++  ++++++++++
T Consensus         1 M~I~iIG~G~mG~~la~~l~~~--g~~V~~~~~~~~~~~~~~~~~~-------------------g~~--~~~~~~~~~a   57 (264)
T 1i36_A            1 LRVGFIGFGEVAQTLASRLRSR--GVEVVTSLEGRSPSTIERARTV-------------------GVT--ETSEEDVYSC   57 (264)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT--TCEEEECCTTCCHHHHHHHHHH-------------------TCE--ECCHHHHHTS
T ss_pred             CeEEEEechHHHHHHHHHHHHC--CCeEEEeCCccCHHHHHHHHHC-------------------CCc--CCHHHHHhcC
Confidence            7999999999999999999998  999999999  77877766531                   233  5667778999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      |+||+|||++..               ...+.++.+.+++  +|++.||+.+.+.+.+.+.+.+.+      ++.+|...
T Consensus        58 Dvvi~~v~~~~~---------------~~~~~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~~g------~~~~~v~~  114 (264)
T 1i36_A           58 PVVISAVTPGVA---------------LGAARRAGRHVRG--IYVDINNISPETVRMASSLIEKGG------FVDAAIMG  114 (264)
T ss_dssp             SEEEECSCGGGH---------------HHHHHHHHTTCCS--EEEECSCCCHHHHHHHHHHCSSSE------EEEEEECS
T ss_pred             CEEEEECCCHHH---------------HHHHHHHHHhcCc--EEEEccCCCHHHHHHHHHHHhhCC------eeeeeeeC
Confidence            999999986421               1223567777765  888889998888888877665431      12233222


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCC-hhHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTN-LWSAELSKLAANAFLAQRISSVNAMSALCE  238 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~-~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~  238 (480)
                      .+..+...   .. +++|++    +.   +.+++ |+.++. ..++..+ ++.+++.|++.|.+....+++++|+..+++
T Consensus       115 ~~~~~~~g---~~-~~~~g~----~~---~~~~~-l~~~g~-~~~~~~~~~g~~~~~kl~~n~~~~~~~~~~~Ea~~la~  181 (264)
T 1i36_A          115 SVRRKGAD---IR-IIASGR----DA---EEFMK-LNRYGL-NIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAH  181 (264)
T ss_dssp             CHHHHGGG---CE-EEEEST----TH---HHHHG-GGGGTC-EEEECSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccccccC---Ce-EEecCC----cH---HHhhh-HHHcCC-eeEECCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22111111   12 567775    22   67888 998853 2344454 899999999999999999999999999999


Q ss_pred             HhCCCHHHHHHHhcCCCCCCCcc-------c--cCCCCCcccchhhhHHHHHHHHHHcCCchhhhHHHHHHH
Q 011654          239 ATGADVTQVSHAIGKDTRIGPRF-------L--NSSVGFGGSCFQKDILNLVYICECNGLTEVANYWKQVIK  301 (480)
Q Consensus       239 ~~Gid~~~v~~~~~~~~~~~~~~-------~--~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~~~~~~~~  301 (480)
                      ++|+|.+ +++.+....  +..+       +  ...+|+.   +.||+.++.+.+++. ++  .++.+++.+
T Consensus       182 ~~G~~~~-~~~~~~~~~--g~~~~~~~~~~~~~~~~~g~~---~~~~~~~~~~~a~~~-v~--~p~~~~v~~  244 (264)
T 1i36_A          182 RLGLEED-VLEMLEYTE--GNDFRESAISRLKSSCIHARR---RYEEMKEVQDMLAEV-ID--PVMPTCIIR  244 (264)
T ss_dssp             HTTCHHH-HHHHHHTTS--CSSTHHHHHHHHHHHHHTHHH---HHHHHHHHHHHHHTT-SC--CSHHHHHHH
T ss_pred             HcCCcHH-HHHHHHHhc--CccHHHHHHHHhcCCCCcchh---hHHHHHHHHHHHHHh-cC--chHHHHHHH
Confidence            9999986 777776542  1111       1  1123333   679999999999999 88  566655443

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=99.86  E-value=1.4e-20  Score=188.72  Aligned_cols=275  Identities=14%  Similarity=0.118  Sum_probs=190.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec--CHHHHhc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI--SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST--DIEKHVA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~--~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~--d~~~a~~   77 (480)
                      |||+|||+|.||.++|..|+++  |++|++||+  ++++++.+++....+.. +..      . .++.+++  +++++++
T Consensus         1 m~I~iiG~G~mG~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~-g~~------~-~~~~~~~~~~~~~~~~   70 (335)
T 1txg_A            1 MIVSILGAGAMGSALSVPLVDN--GNEVRIWGTEFDTEILKSISAGREHPRL-GVK------L-NGVEIFWPEQLEKCLE   70 (335)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH--CCEEEEECCGGGHHHHHHHHTTCCBTTT-TBC------C-CSEEEECGGGHHHHHT
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCeEEEEEccCCHHHHHHHHHhCcCccc-Ccc------c-cceEEecHHhHHHHHh
Confidence            7999999999999999999998  999999999  99999999875321111 110      0 2456777  8878789


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec-CC---ccchHHHHHHHHHhcCCC-CceeE
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS-TV---PVKTAEAIEKILTHNSRE-IKYQI  152 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv---~~gt~~~l~~~l~~~~~g-~~~~v  152 (480)
                      ++|+||+|||++               .+.++++++.+ ++++++|+..+ ++   ++++.+.+.+.+.+..++ ..+.+
T Consensus        71 ~~D~vi~~v~~~---------------~~~~v~~~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~  134 (335)
T 1txg_A           71 NAEVVLLGVSTD---------------GVLPVMSRILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVA  134 (335)
T ss_dssp             TCSEEEECSCGG---------------GHHHHHHHHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEE
T ss_pred             cCCEEEEcCChH---------------HHHHHHHHHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEE
Confidence            999999999853               24678888988 88899888776 66   777777788777653111 13455


Q ss_pred             eeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHh-----------------
Q 011654          153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELS-----------------  215 (480)
Q Consensus       153 ~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~-----------------  215 (480)
                      ..+|.....+..    ..+..+++|+.    +++..+.++++|+..+. ..++..|+..++|.                 
T Consensus       135 ~~~p~~~~~~~~----g~~~~~~~~~~----~~~~~~~~~~ll~~~g~-~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~  205 (335)
T 1txg_A          135 ITGPAIAREVAK----RMPTTVVFSSP----SESSANKMKEIFETEYF-GVEVTTDIIGTEITSALKNVYSIAIAWIRGY  205 (335)
T ss_dssp             EESSCCHHHHHT----TCCEEEEEECS----CHHHHHHHHHHHCBTTE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EECCCcHHHHHc----cCCcEEEEEeC----CHHHHHHHHHHhCCCcE-EEEecCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567765443211    12234667765    47788999999998642 23456788888886                 


Q ss_pred             hhH-----HhHHHHHHHHHHHHHHHHHHHhCCCHHHHH------HHhcCCCCCCCcc-c--cCCCCCcc----------c
Q 011654          216 KLA-----ANAFLAQRISSVNAMSALCEATGADVTQVS------HAIGKDTRIGPRF-L--NSSVGFGG----------S  271 (480)
Q Consensus       216 Kl~-----~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~------~~~~~~~~~~~~~-~--~pg~g~gg----------~  271 (480)
                      |+.     +|.++++..++++|+..+|+++|+|+.++.      +.+.+... +.+. +  ..+.|+..          .
T Consensus       206 ~~~~l~~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~d~~~~~~~~  284 (335)
T 1txg_A          206 ESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRG-GRNGMLGELLGKGLSIDEAMEELERRG  284 (335)
T ss_dssp             HHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC-HHHHHHHHHHHTTCCHHHHHHHHHHTT
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcchhhcccchhheeecccc-CccHHHHHHHhCCCCHHHHHHHhccCC
Confidence            555     777888899999999999999999987654      33322110 0010 0  11222311          1


Q ss_pred             -chh---hhHHHHHHHHHHcCCchhhhHHHHHHHHHHH--hHHHHHHHH
Q 011654          272 -CFQ---KDILNLVYICECNGLTEVANYWKQVIKVNDY--QKNRFVNRI  314 (480)
Q Consensus       272 -cl~---kD~~~l~~~a~~~g~~~~~~~~~~~~~~N~~--~~~~~~~~~  314 (480)
                       +..   ||..+++++++++|++  .++.+.+.+....  .|...++.+
T Consensus       285 ~~~~E~~~~~~~~~~~a~~~gv~--~P~~~~~~~~~~~~~~~~~~~~~l  331 (335)
T 1txg_A          285 VGVVEGYKTAEKAYRLSSKINAD--TKLLDSIYRVLYEGLKVEEVLFEL  331 (335)
T ss_dssp             CCCCHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             ceecchHHHHHHHHHHHHHcCCC--CcHHHHHHHHHhCCCCHHHHHHHH
Confidence             333   9999999999999998  7777777665543  444444443

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=99.86  E-value=3.3e-21  Score=196.88  Aligned_cols=268  Identities=15%  Similarity=0.151  Sum_probs=185.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCC-------CeEEEEeCCHH-----HHHHHHCC-CCCCCCCChHHHHHhhcCCCEE
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPK-------IEVAVVDISVS-----RIAAWNGD-QLPIYEPGLEDVVTQCRGRNLF   67 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G-------~~V~~~D~~~~-----~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~   67 (480)
                      ||||+|||+|.||+++|..|+++  |       ++|++||++++     +++.+++. ....+.++..      ...++.
T Consensus        21 ~~kI~iIGaG~mG~alA~~L~~~--G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~i~   92 (375)
T 1yj8_A           21 PLKISILGSGNWASAISKVVGTN--AKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVP------LPHNIV   92 (375)
T ss_dssp             CBCEEEECCSHHHHHHHHHHHHH--HHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCB------CCTTEE
T ss_pred             CCEEEEECcCHHHHHHHHHHHHc--CCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCccc------CcCCeE
Confidence            47999999999999999999998  8       99999999998     88888753 3333333321      123578


Q ss_pred             EecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHh----hCCCCCEEEEec-CCcc--chHHHHHHH
Q 011654           68 FSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIAN----VSNSNKIVVEKS-TVPV--KTAEAIEKI  140 (480)
Q Consensus        68 ~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~----~l~~~~iVi~~S-Tv~~--gt~~~l~~~  140 (480)
                      ++++++++++++|+||+|||+               ..++++++++.+    .++++++|+..+ ++.+  ++.+.+.+.
T Consensus        93 ~~~~~~ea~~~aDvVilav~~---------------~~~~~vl~~i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~  157 (375)
T 1yj8_A           93 AHSDLASVINDADLLIFIVPC---------------QYLESVLASIKESESIKIASHAKAISLTKGFIVKKNQMKLCSNY  157 (375)
T ss_dssp             EESSTHHHHTTCSEEEECCCH---------------HHHHHHHHHHTC---CCCCTTCEEEECCCSCEEETTEEECHHHH
T ss_pred             EECCHHHHHcCCCEEEEcCCH---------------HHHHHHHHHHhhhhhccCCCCCEEEEeCCccccCCccccCHHHH
Confidence            889998888999999999984               246888899988    888899888776 4566  344455555


Q ss_pred             HHhcCCCCceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhH--
Q 011654          141 LTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLA--  218 (480)
Q Consensus       141 l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~--  218 (480)
                      +++.. +.++.+..+|.+..+...    ..+..+++++.    +++..+.++++|+..+. ..+...|+..++|.|++  
T Consensus       158 l~~~~-~~~~~v~~gp~~a~~v~~----g~~~~~~~~~~----~~~~~~~v~~ll~~~g~-~~~~~~di~~~~~~k~l~N  227 (375)
T 1yj8_A          158 ISDFL-NIPCSALSGANIAMDVAM----ENFSEATIGGN----DKDSLVIWQRVFDLPYF-KINCVNETIEVEICGALKN  227 (375)
T ss_dssp             HHHHS-SSCEEEEECSCCHHHHHT----TCCEEEEEECS----CHHHHHHHHHHHCBTTE-EEEEESCSHHHHHHHHHHH
T ss_pred             HHHHc-CCCEEEEeCCchHHHHHh----CCCeEEEEecC----CHHHHHHHHHHhCCCCe-EEEEeCCcHHHHHHHHHHH
Confidence            55433 134566677776543211    12223455654    47788999999998641 23455788888887665  


Q ss_pred             ---------------HhHHHHHHHHHHHHHHHHHHHh--CCCHHHHHHHhc--------CCCC---CCCccccCC--CCC
Q 011654          219 ---------------ANAFLAQRISSVNAMSALCEAT--GADVTQVSHAIG--------KDTR---IGPRFLNSS--VGF  268 (480)
Q Consensus       219 ---------------~N~~~~~~ia~~nE~~~l~~~~--Gid~~~v~~~~~--------~~~~---~~~~~~~pg--~g~  268 (480)
                                     +|.+.++.+++++|+..+|++.  |+|++++.++.+        ..++   ++..+..+|  ..+
T Consensus       228 ~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~~~la~a~G~G~~~~~~~~~~g~~dl~~t~~~~~~~~~~~~~~~~g~~~~~  307 (375)
T 1yj8_A          228 IITLACGFCDGLNLPTNSKSAIIRNGINEMILFGKVFFQKFNENILLESCGFADIITSFLAGRNAKCSAEFIKSTPKKTW  307 (375)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSCCCGGGGGSTTTHHHHHHHHSSSSHHHHHHHHHHHTTSSCH
T ss_pred             HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHhccCCCcchhhccccccceeEeeeCCccHHHHHHHHhcCCCCCH
Confidence                           5668889999999999999999  699876643211        1111   111111101  111


Q ss_pred             c--------ccch--hhhHHHHHHHHHHcCC--chhhhHHHHHHHHH
Q 011654          269 G--------GSCF--QKDILNLVYICECNGL--TEVANYWKQVIKVN  303 (480)
Q Consensus       269 g--------g~cl--~kD~~~l~~~a~~~g~--~~~~~~~~~~~~~N  303 (480)
                      .        |.+.  .+|..++.++++++|+  +  .++.+.+.++.
T Consensus       308 ~d~~~~~~~g~~~E~~~~~~~v~~~a~~~gv~~~--~P~~~~v~~~~  352 (375)
T 1yj8_A          308 EELENEILKGQKLQGTVTLKYVYHMIKEKNMTNE--FPLFTVLHKIS  352 (375)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCGGG--CHHHHHHHHHH
T ss_pred             HHHHHhhcCCcEeeHHHHHHHHHHHHHHhCCCCC--CCHHHHHHHHH
Confidence            1        4554  7899999999999999  7  67777666554

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=99.86  E-value=3.3e-20  Score=194.93  Aligned_cols=251  Identities=10%  Similarity=0.121  Sum_probs=182.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc---
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE---   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~---   78 (480)
                      |||+|||+|.||.++|..|+++  |++|++||+++++++.+.+...               ..++..+++++++++.   
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~---------------~~gi~~~~s~~e~v~~l~~   68 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVESR--GYTVAIYNRTTSKTEEVFKEHQ---------------DKNLVFTKTLEEFVGSLEK   68 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTT---------------TSCEEECSSHHHHHHTBCS
T ss_pred             CcEEEEeeHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHHHhCc---------------CCCeEEeCCHHHHHhhccC
Confidence            6899999999999999999998  9999999999999988875210               0147778899887776   


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      +|+||+|||++              ..+.++++++.+.++++++||+.|+..+..++++.+.+++.+    +.++.+|..
T Consensus        69 aDvVilavp~~--------------~~v~~vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g----~~~v~~pv~  130 (474)
T 2iz1_A           69 PRRIMLMVQAG--------------AATDATIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSG----INFIGTGVS  130 (474)
T ss_dssp             SCEEEECCCTT--------------HHHHHHHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSS----CEEEEEEEC
T ss_pred             CCEEEEEccCc--------------hHHHHHHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCC----CeEECCCCC
Confidence            99999999864              235778889999999999999988887777777766665432    233345554


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCC-------eEEeCChhHHHHhhhHHhHHHHHHHHHHH
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPED-------RIITTNLWSAELSKLAANAFLAQRISSVN  231 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~-------~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n  231 (480)
                      ..+..+...   + .+++|++     ++..+.++++|+.++...       ..+.++.+.+.++|+++|.+.+..+.+++
T Consensus       131 gg~~~a~~g---~-~i~~gg~-----~~~~~~v~~ll~~~g~~~~~dge~~~~~~g~~g~g~~~Kl~~N~~~~~~~~~la  201 (474)
T 2iz1_A          131 GGEKGALLG---P-SMMPGGQ-----KEAYDLVAPIFEQIAAKAPQDGKPCVAYMGANGAGHYVKMVHNGIEYGDMQLIA  201 (474)
T ss_dssp             SHHHHHHHC---C-CEEEEEC-----HHHHHHHHHHHHHHSCBCTTTCCBSBCCCBSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChhhhccC---C-eEEecCC-----HHHHHHHHHHHHHHhcccccCCCceEEEECCccHHHHHHHHHhHHHHHHHHHHH
Confidence            333222211   1 3677874     788999999999986320       24556789999999999999999999999


Q ss_pred             HHHHHHHH-hCCCHHHHHHHhc---CCC---CC---CCc-cc--cCCCC-Ccccch-----hhhHH-HHHHHHHHcCCch
Q 011654          232 AMSALCEA-TGADVTQVSHAIG---KDT---RI---GPR-FL--NSSVG-FGGSCF-----QKDIL-NLVYICECNGLTE  291 (480)
Q Consensus       232 E~~~l~~~-~Gid~~~v~~~~~---~~~---~~---~~~-~~--~pg~g-~gg~cl-----~kD~~-~l~~~a~~~g~~~  291 (480)
                      |+..++++ +|++.+++.+++.   ...   ..   ... +.  +..+| +-..-+     .||.. .....++++|++ 
T Consensus       202 Ea~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~~~l~~~d~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~-  280 (474)
T 2iz1_A          202 ESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKEVLKRKDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVP-  280 (474)
T ss_dssp             HHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHTTCBCSSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCC-
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHHhhhhHhhcCCCCCChhHHHHHHHhhcccchHHHHHHHHHHcCCC-
Confidence            99999999 8999999988873   221   00   001 11  12222 222211     26665 567889999998 


Q ss_pred             hhhHHHH
Q 011654          292 VANYWKQ  298 (480)
Q Consensus       292 ~~~~~~~  298 (480)
                       .+++..
T Consensus       281 -~P~~~~  286 (474)
T 2iz1_A          281 -LPLITE  286 (474)
T ss_dssp             -CHHHHH
T ss_pred             -CchHHH
Confidence             565554

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=99.85  E-value=2e-21  Score=197.74  Aligned_cols=279  Identities=16%  Similarity=0.165  Sum_probs=189.7

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC-CCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD-QLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ||+|||+|.||.++|..|+++  ||+|++||+++++++.+++. ....+.++..      ...+++++++++++++++|+
T Consensus        17 kI~iIG~G~mG~~la~~L~~~--G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~aDv   88 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKK--CREVCVWHMNEEEVRLVNEKRENVLFLKGVQ------LASNITFTSDVEKAYNGAEI   88 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTT--EEEEEEECSCHHHHHHHHHHTBCTTTSTTCB------CCTTEEEESCHHHHHTTCSS
T ss_pred             eEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHcCcccccccccc------cccceeeeCCHHHHHcCCCE
Confidence            999999999999999999988  99999999999999988763 2222333321      12357888899888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHH----HHhhCCC-CCEEEEec-CCccchHHHHHHHHHhcCCCCceeEeeC
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARM----IANVSNS-NKIVVEKS-TVPVKTAEAIEKILTHNSREIKYQILSN  155 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~----i~~~l~~-~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~  155 (480)
                      ||+|||+               ..+.+++++    +.+.+++ +++|+..+ ++.+++.+.+.+.+.+..+...+.+..+
T Consensus        89 Vilav~~---------------~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~g  153 (366)
T 1evy_A           89 ILFVIPT---------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAG  153 (366)
T ss_dssp             EEECCCH---------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEES
T ss_pred             EEECCCh---------------HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeC
Confidence            9999984               235778887    8888887 88888776 6777766666666665422123456677


Q ss_pred             CccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhcc--CCCCeEEeCChhHHHHhhhH---------------
Q 011654          156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHW--VPEDRIITTNLWSAELSKLA---------------  218 (480)
Q Consensus       156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~--~~~~~v~~~~~~~ae~~Kl~---------------  218 (480)
                      |.+..+...    ..+..+++++.    +++..+.++++|+..  .- ..+...|+...++.|++               
T Consensus       154 p~~~~~~~~----g~~~~~~~~~~----~~~~~~~v~~ll~~~g~g~-~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~  224 (366)
T 1evy_A          154 PSFAIEVAT----GVFTCVSIASA----DINVARRLQRIMSTGDRSF-VCWATTDTVGCEVASAVKNVLAIGSGVANGLG  224 (366)
T ss_dssp             SCCHHHHHT----TCCEEEEEECS----SHHHHHHHHHHHSCTTSSE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHHh----CCceEEEEecC----CHHHHHHHHHHhcCCCCeE-EEEEcCCchHHHHHHHHHhHHHHHHHHHhhcc
Confidence            776542111    11223455654    467889999999986  42 23445677777776654               


Q ss_pred             --HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhc--------CCC--C---CCCccccCCCCCc------ccch--hh
Q 011654          219 --ANAFLAQRISSVNAMSALCEATGADVTQVSHAIG--------KDT--R---IGPRFLNSSVGFG------GSCF--QK  275 (480)
Q Consensus       219 --~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~--------~~~--~---~~~~~~~pg~g~g------g~cl--~k  275 (480)
                        +|.+.++.+++++|+..+|++.|+|++++.++.+        ..+  +   ++..+.. |..+.      +.|.  .|
T Consensus       225 ~~~n~~~~~~~~~~~E~~~la~a~Gi~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~e~~~  303 (366)
T 1evy_A          225 MGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGK-GLPIEEIQRTSKAVAEGVA  303 (366)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTTCCCTTTTSTTTHHHHHHHHTCTTSHHHHHHHHHHT-TCCHHHHHC---CCCHHHH
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHhCCCCccccccccchhheeeecCCCCchHHHHHHHhC-CCCHHHHHHHcCCeeehHH
Confidence              5667888999999999999999999866543211        011  0   0001101 11111      2232  59


Q ss_pred             hHHHHHHHHHHcCCchhhhHHHHHHHHHHH--hHHHHHHHHHH
Q 011654          276 DILNLVYICECNGLTEVANYWKQVIKVNDY--QKNRFVNRIVS  316 (480)
Q Consensus       276 D~~~l~~~a~~~g~~~~~~~~~~~~~~N~~--~~~~~~~~~~~  316 (480)
                      |..++.++++++|++  .++.+.+.+....  .|...++.+++
T Consensus       304 ~~~~v~~~a~~~gv~--~P~~~~v~~~~~~~~~~~~~~~~l~~  344 (366)
T 1evy_A          304 TADPLMRLAKQLKVK--MPLCHQIYEIVYKKKNPRDALADLLS  344 (366)
T ss_dssp             HHHHHHHHHHHHTCC--CHHHHHHHHHHHSCCCHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhCCC--CcHHHHHHHHHHCCCCHHHHHHHHHc
Confidence            999999999999998  7887777765543  56666665543

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=99.84  E-value=1.4e-20  Score=190.34  Aligned_cols=266  Identities=16%  Similarity=0.157  Sum_probs=180.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC-------CeEEEEeCCHH-----HHHHHHCC-CCCCCCCChHHHHHhhcCCCEEE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK-------IEVAVVDISVS-----RIAAWNGD-QLPIYEPGLEDVVTQCRGRNLFF   68 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G-------~~V~~~D~~~~-----~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~~   68 (480)
                      |||+|||+|.||.++|..|+++  |       ++|++||++++     +.+.+++. ....+.++..      ...++++
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~--g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~~~~~   80 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGN--AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHK------LPPNVVA   80 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH--HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCC------CCTTEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhc--CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCccc------CccCeEE
Confidence            7999999999999999999998  8       99999999998     88888753 2222222211      1235788


Q ss_pred             ecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-Cc--cchHHHHHHHHHhcC
Q 011654           69 STDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VP--VKTAEAIEKILTHNS  145 (480)
Q Consensus        69 t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~--~gt~~~l~~~l~~~~  145 (480)
                      +++++++++++|+||+|||+.               .+.++++++.++++++++|+..++ +.  |++.+.+.+.+++..
T Consensus        81 ~~~~~~~~~~aD~Vilav~~~---------------~~~~v~~~i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~  145 (354)
T 1x0v_A           81 VPDVVQAAEDADILIFVVPHQ---------------FIGKICDQLKGHLKANATGISLIKGVDEGPNGLKLISEVIGERL  145 (354)
T ss_dssp             ESSHHHHHTTCSEEEECCCGG---------------GHHHHHHHHTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHH
T ss_pred             EcCHHHHHcCCCEEEEeCCHH---------------HHHHHHHHHHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHc
Confidence            889988889999999999852               257888999999998998887765 44  454444555554432


Q ss_pred             CCCceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhH-------
Q 011654          146 REIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLA-------  218 (480)
Q Consensus       146 ~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~-------  218 (480)
                       +.++.+..+|.+..+...    ..+..+++++.    +++..+.++++|+..+. ..++..|+..++|.|++       
T Consensus       146 -~~~~~v~~gp~~a~~v~~----g~~~~~~~~~~----~~~~~~~v~~ll~~~g~-~~~~~~di~~~~~~k~~~N~~~~~  215 (354)
T 1x0v_A          146 -GIPMSVLMGANIASEVAD----EKFCETTIGCK----DPAQGQLLKELMQTPNF-RITVVQEVDTVEICGALKNVVAVG  215 (354)
T ss_dssp             -TCCEEEEECSCCHHHHHT----TCCEEEEEECS----SHHHHHHHHHHHCBTTE-EEEEESCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCEEEEECCCcHHHHHh----cCCceEEEEEC----CHHHHHHHHHHhCCCCE-EEEEcCCchHhHHHHHHHHHHHHH
Confidence             124556677776543111    12223555654    47788999999998642 23445788888888776       


Q ss_pred             ----------HhHHHHHHHHHHHHHHHHHHHhCC---CHHHHHHHh------cC--CCC---CCCccccCCCCCc-----
Q 011654          219 ----------ANAFLAQRISSVNAMSALCEATGA---DVTQVSHAI------GK--DTR---IGPRFLNSSVGFG-----  269 (480)
Q Consensus       219 ----------~N~~~~~~ia~~nE~~~l~~~~Gi---d~~~v~~~~------~~--~~~---~~~~~~~pg~g~g-----  269 (480)
                                +|.+.++...+++|+..+|++.|+   +++++.++.      .+  ..+   ++..+...|..+.     
T Consensus       216 ~g~~~~~~~~~n~~~~~~~~~~~E~~~la~a~G~~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (354)
T 1x0v_A          216 AGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSSATFLESCGVADLITTCYGGRNRKVAEAFARTGKSIEQLEKE  295 (354)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSSCCCGGGGGSTTTHHHHHHHHHHCHHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HHHHHHccCCccHHHHHHHHHHHHHHHHHHHhcCCCCCcccccccchHHHHHHhhcccccHHHHHHHHhcCCCHHHHHHh
Confidence                      667888999999999999999999   876653221      10  011   1111111111111     


Q ss_pred             ---ccch--hhhHHHHHHHHHHcCC--chhhhHHHHHHHH
Q 011654          270 ---GSCF--QKDILNLVYICECNGL--TEVANYWKQVIKV  302 (480)
Q Consensus       270 ---g~cl--~kD~~~l~~~a~~~g~--~~~~~~~~~~~~~  302 (480)
                         |.+.  .+|..++.++++++|+  +  .++.+.+.+.
T Consensus       296 ~~~g~~~E~~~~~g~v~~~a~~~gv~~~--~P~~~~v~~~  333 (354)
T 1x0v_A          296 LLNGQKLQGPETARELYSILQHKGLVDK--FPLFMAVYKV  333 (354)
T ss_dssp             HSTTCCCHHHHHHHHHHHHHHHHTCGGG--SHHHHHHHHH
T ss_pred             hcCCcEeehHHHHHHHHHHHHHhCCCCC--CCHHHHHHHH
Confidence               3333  6888899999999999  7  6766655544

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=99.83  E-value=3.6e-20  Score=186.21  Aligned_cols=257  Identities=16%  Similarity=0.173  Sum_probs=174.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||+++|..|+++  |++|++||+++++++.+++.....++++..        .++++++++++ ++++|+
T Consensus        15 ~kI~iIG~G~mG~ala~~L~~~--G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~--------~~~~~~~~~~~-~~~aDv   83 (335)
T 1z82_A           15 MRFFVLGAGSWGTVFAQMLHEN--GEEVILWARRKEIVDLINVSHTSPYVEESK--------ITVRATNDLEE-IKKEDI   83 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHSCBTTBTTCC--------CCSEEESCGGG-CCTTEE
T ss_pred             CcEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCcccCCCCe--------eeEEEeCCHHH-hcCCCE
Confidence            7999999999999999999998  999999999999999998643211333331        14677888888 889999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec-CCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS-TVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      ||+|||++               .++++++++.+   ++++||..+ ++.+.+.+.+.+.+.+..+ .++.+..+|.+..
T Consensus        84 Vil~vk~~---------------~~~~v~~~l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~-~~~~~~~~P~~~~  144 (335)
T 1z82_A           84 LVIAIPVQ---------------YIREHLLRLPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILG-CPYAVLSGPSHAE  144 (335)
T ss_dssp             EEECSCGG---------------GHHHHHTTCSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTC-CCEEEEESSCCHH
T ss_pred             EEEECCHH---------------HHHHHHHHhCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcC-CceEEEECCccHH
Confidence            99999842               24666665544   678888777 5777666667666655432 3455666776654


Q ss_pred             ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHH-----------------hHHH
Q 011654          161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAA-----------------NAFL  223 (480)
Q Consensus       161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~-----------------N~~~  223 (480)
                      +...    ..+..+++|+.     +  .+.++++|+..+. ...+..|+...+|.|++.                 |.++
T Consensus       145 ~~~~----g~~~~~~~g~~-----~--~~~~~~ll~~~g~-~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~  212 (335)
T 1z82_A          145 EVAK----KLPTAVTLAGE-----N--SKELQKRISTEYF-RVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKA  212 (335)
T ss_dssp             HHHT----TCCEEEEEEET-----T--HHHHHHHHCCSSE-EEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHhC----CCceEEEEEeh-----h--HHHHHHHhCCCCE-EEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHH
Confidence            3211    11224556654     2  6789999998642 234456877777765554                 5566


Q ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHhcC--------CC--C---CCCccccCCCCCc------ccch--hhhHHHHHH
Q 011654          224 AQRISSVNAMSALCEATGADVTQVSHAIGK--------DT--R---IGPRFLNSSVGFG------GSCF--QKDILNLVY  282 (480)
Q Consensus       224 ~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~--------~~--~---~~~~~~~pg~g~g------g~cl--~kD~~~l~~  282 (480)
                      ++...+++|+..++++.|+|++++.++.+.        ++  +   ++..+.. |..+.      |.+.  .||..++.+
T Consensus       213 a~~~~~~~E~~~la~a~G~~~~~~~~l~~~~~~~~t~~s~~~~n~~~~~~~~~-g~~~~~~~~~~g~~~e~~~~~~~v~~  291 (335)
T 1z82_A          213 ALETRGIYEIARFGMFFGADQKTFMGLAGIGDLMVTCNSRYSRNRRFGELIAR-GFNPLKLLESSNQVVEGAFTVKAVMK  291 (335)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCTTCHHHHHHHHHHH-TCCHHHHHHTCSSCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCChhhhcccccccceeeeccCccCcHHHHHHHHhC-CCCHHHHHHhcCCeeeHHHHHHHHHH
Confidence            788899999999999999999877553211        11  0   1111111 11111      3333  499999999


Q ss_pred             HHHHcCCchhhhHHHHHHHHH
Q 011654          283 ICECNGLTEVANYWKQVIKVN  303 (480)
Q Consensus       283 ~a~~~g~~~~~~~~~~~~~~N  303 (480)
                      +++++|++  .++.+.+.+..
T Consensus       292 ~a~~~gv~--~P~~~~v~~~~  310 (335)
T 1z82_A          292 IAKENKID--MPISEEVYRVV  310 (335)
T ss_dssp             HHHHTTCC--CHHHHHHHHHH
T ss_pred             HHHHhCCC--CcHHHHHHHHH
Confidence            99999998  67777666544

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=99.83  E-value=2e-19  Score=178.39  Aligned_cols=266  Identities=13%  Similarity=0.080  Sum_probs=170.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh---c
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV---A   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~---~   77 (480)
                      ||||+|||+|.||.++|..|+++  |++|++||+++++++.+++....+...+- .     ...++.++++ .+..   +
T Consensus         3 ~m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~~~~~~~~~g~~~~~~~~-~-----~~~~~~~~~~-~~~~~~~~   73 (316)
T 2ew2_A            3 AMKIAIAGAGAMGSRLGIMLHQG--GNDVTLIDQWPAHIEAIRKNGLIADFNGE-E-----VVANLPIFSP-EEIDHQNE   73 (316)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHCEEEEETTE-E-----EEECCCEECG-GGCCTTSC
T ss_pred             CCeEEEECcCHHHHHHHHHHHhC--CCcEEEEECCHHHHHHHHhCCEEEEeCCC-e-----eEecceeecc-hhhcccCC
Confidence            58999999999999999999998  99999999999999988753211110000 0     0012223332 3323   3


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      ++|+||+|||++               .+.++++++.++++++++|+..++ ..++.+.+.+.+.+... ..-....+.+
T Consensus        74 ~~d~vi~~v~~~---------------~~~~v~~~l~~~l~~~~~iv~~~~-g~~~~~~l~~~~~~~~v-i~g~~~~~~~  136 (316)
T 2ew2_A           74 QVDLIIALTKAQ---------------QLDAMFKAIQPMITEKTYVLCLLN-GLGHEDVLEKYVPKENI-LVGITMWTAG  136 (316)
T ss_dssp             CCSEEEECSCHH---------------HHHHHHHHHGGGCCTTCEEEECCS-SSCTHHHHTTTSCGGGE-EEEEECCCCE
T ss_pred             CCCEEEEEeccc---------------cHHHHHHHHHHhcCCCCEEEEecC-CCCcHHHHHHHcCCccE-EEEEeeeeeE
Confidence            899999999842               357888999999999998887654 34455555554433210 0001112334


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHH---------------
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAF---------------  222 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~---------------  222 (480)
                      +.+|+...... . ..+.++.. ...+++..+.++++|+..+. ..++..++..++|.|++.|+.               
T Consensus       137 ~~~p~~~~~~~-~-g~~~i~~~-~~~~~~~~~~~~~ll~~~g~-~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~  212 (316)
T 2ew2_A          137 LEGPGRVKLLG-D-GEIELENI-DPSGKKFALEVVDVFQKAGL-NPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEF  212 (316)
T ss_dssp             EEETTEEEECS-C-CCEEEEES-SGGGHHHHHHHHHHHHHTTC-CEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHH
T ss_pred             EcCCCEEEEec-C-CcEEEeec-CCCccHHHHHHHHHHHhCCC-CcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHH
Confidence            45555543322 1 22334432 11247788999999998753 344557899999999999963               


Q ss_pred             ------HHHHHHHHHHHHHHHHHhCCCH--HHHHHHhcC--C----CCCCCcc-ccC-CCCCcccchhhhHHHHHHHHHH
Q 011654          223 ------LAQRISSVNAMSALCEATGADV--TQVSHAIGK--D----TRIGPRF-LNS-SVGFGGSCFQKDILNLVYICEC  286 (480)
Q Consensus       223 ------~~~~ia~~nE~~~l~~~~Gid~--~~v~~~~~~--~----~~~~~~~-~~p-g~g~gg~cl~kD~~~l~~~a~~  286 (480)
                            +.+..+.++|+..+++++|+++  ..+.+.+..  .    ++..+.+ ... ..|+--. +.+|..++.+++++
T Consensus       213 ~~~~~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~sm~~d~~~~g~~~E-~~~~~~~~~~~a~~  291 (316)
T 2ew2_A          213 GALPVSESLVKTLISEFAAVAEKEAIYLDQAEVYTHIVQTYDPNGIGLHYPSMYQDLIKNHRLTE-IDYINGAVWRKGQK  291 (316)
T ss_dssp             HTSTTHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCTTTTTTSCCHHHHHHTTTCCCCS-GGGTHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccccCCCCCcHHHHHHHHcCCcch-HHHHhhHHHHHHHH
Confidence                  3677889999999999999986  345554432  1    1111101 111 3344444 78999999999999


Q ss_pred             cCCchhhhHHHHH
Q 011654          287 NGLTEVANYWKQV  299 (480)
Q Consensus       287 ~g~~~~~~~~~~~  299 (480)
                      +|++  .++.+.+
T Consensus       292 ~gv~--~P~~~~~  302 (316)
T 2ew2_A          292 YNVA--TPFCAML  302 (316)
T ss_dssp             HTCC--CHHHHHH
T ss_pred             hCCC--CCHHHHH
Confidence            9998  5655543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.78  E-value=1e-18  Score=167.85  Aligned_cols=197  Identities=15%  Similarity=0.151  Sum_probs=130.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH--HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR--IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|||+|.||.+||..|+++  |++|++||+++++  .+......   ....+.++...  .+... ++++.+++++|
T Consensus        20 ~kIgiIG~G~mG~alA~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~-~~~~~e~~~~a   91 (245)
T 3dtt_A           20 MKIAVLGTGTVGRTMAGALADL--GHEVTIGTRDPKATLARAEPDAM---GAPPFSQWLPE--HPHVH-LAAFADVAAGA   91 (245)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHTCC----------CCHHHHGGG--STTCE-EEEHHHHHHHC
T ss_pred             CeEEEECCCHHHHHHHHHHHHC--CCEEEEEeCChhhhhhhhhhhhh---cchhhhHHHhh--cCcee-ccCHHHHHhcC
Confidence            7999999999999999999998  9999999999987  11100000   00001111111  12233 45677888999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHH-HhhCCCCCEEEEec-----------CCccchHHHHHHHHHhcCCC
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMI-ANVSNSNKIVVEKS-----------TVPVKTAEAIEKILTHNSRE  147 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i-~~~l~~~~iVi~~S-----------Tv~~gt~~~l~~~l~~~~~g  147 (480)
                      |+||+|||++.               +.+++.++ .+.+ ++++||+.|           |+.|++...+.+.+++...+
T Consensus        92 DvVilavp~~~---------------~~~~~~~i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~  155 (245)
T 3dtt_A           92 ELVVNATEGAS---------------SIAALTAAGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPE  155 (245)
T ss_dssp             SEEEECSCGGG---------------HHHHHHHHCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTT
T ss_pred             CEEEEccCcHH---------------HHHHHHHhhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCC
Confidence            99999998532               24556667 5666 789999998           77777666555555553211


Q ss_pred             C----ceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHH
Q 011654          148 I----KYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFL  223 (480)
Q Consensus       148 ~----~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~  223 (480)
                      .    .+..+.+|....+..+...   +..+++++.    +++..+.++++|+.++....++.++.+.|..+|+++|.+.
T Consensus       156 ~~vv~~~~~~~a~v~~~~~~a~~g---~~~~~v~g~----d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~  228 (245)
T 3dtt_A          156 AKVVKTLNTMNASLMVDPGRAAGG---DHSVFVSGN----DAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWI  228 (245)
T ss_dssp             SEEEECSTTSCHHHHHCGGGTGGG---CCCEEEECS----CHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHH
T ss_pred             CeEEEeecccCHHHhcCccccCCC---CeeEEEECC----CHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHH
Confidence            0    1223345555444333211   124667776    4889999999999986312467889999999999999999


Q ss_pred             HHHHHH
Q 011654          224 AQRISS  229 (480)
Q Consensus       224 ~~~ia~  229 (480)
                      .+++++
T Consensus       229 ~l~~~~  234 (245)
T 3dtt_A          229 RLWGAL  234 (245)
T ss_dssp             HHHHHH
T ss_pred             HHHHHc
Confidence            887653

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=99.76  E-value=7.3e-17  Score=157.85  Aligned_cols=196  Identities=15%  Similarity=0.168  Sum_probs=143.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-   77 (480)
                      ||||+|||+|.||.++|..|++.  |+  +|++||+++++++.+++...                 ....+++++++++ 
T Consensus         1 m~~I~iIG~G~mG~~~a~~l~~~--g~~~~V~~~d~~~~~~~~~~~~g~-----------------~~~~~~~~~~~~~~   61 (281)
T 2g5c_A            1 MQNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDINPESISKAVDLGI-----------------IDEGTTSIAKVEDF   61 (281)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHTTS-----------------CSEEESCGGGGGGT
T ss_pred             CcEEEEEecCHHHHHHHHHHHhc--CCCcEEEEEeCCHHHHHHHHHCCC-----------------cccccCCHHHHhcC
Confidence            68999999999999999999988  88  99999999999887764210                 0134567777788 


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      ++|+||+|||..               .+.++++++.+.++++++|++.+++.+.+.+.+.+.+.+..  ...+-..+++
T Consensus        62 ~aDvVilavp~~---------------~~~~v~~~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~--v~~~p~~~~~  124 (281)
T 2g5c_A           62 SPDFVMLSSPVR---------------TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRF--VGGHPIAGTE  124 (281)
T ss_dssp             CCSEEEECSCHH---------------HHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGE--ECEEEECCCS
T ss_pred             CCCEEEEcCCHH---------------HHHHHHHHHHhhCCCCcEEEECCCCcHHHHHHHHHhccccc--eeeccccCCc
Confidence            999999999842               24677888888899999999888887776677777765410  0112233455


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeC-ChhHHHHhhhHHhHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITT-NLWSAELSKLAANAFLAQRISSVNAMSA  235 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~ae~~Kl~~N~~~~~~ia~~nE~~~  235 (480)
                      ..+|+.+..+++....+++.. ....+++..+.++++|+.++  ..++.. +....+++|++.|....+.+++++.+..
T Consensus       125 ~~gp~~a~~~l~~g~~~~~~~-~~~~~~~~~~~v~~l~~~~g--~~~~~~~~~~~d~~~~~~~~~~~~~a~~~~~~~~~  200 (281)
T 2g5c_A          125 KSGVEYSLDNLYEGKKVILTP-TKKTDKKRLKLVKRVWEDVG--GVVEYMSPELHDYVFGVVSHLPHAVAFALVDTLIH  200 (281)
T ss_dssp             CCSGGGCCSSTTTTCEEEECC-CSSSCHHHHHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred             cCChhhhhhHHhCCCCEEEec-CCCCCHHHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            556677766666655444442 11225788999999999985  355554 4566899999999988878888877665

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=99.73  E-value=1.1e-16  Score=157.18  Aligned_cols=194  Identities=22%  Similarity=0.266  Sum_probs=133.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +||+|||+|.||.+||.+|+ +  |++|++||+++++++.+.+.   +    .++     ..+++++++|+++ +++||+
T Consensus        13 ~~V~vIG~G~MG~~iA~~la-a--G~~V~v~d~~~~~~~~~~~~---l----~~~-----~~~~i~~~~~~~~-~~~aDl   76 (293)
T 1zej_A           13 MKVFVIGAGLMGRGIAIAIA-S--KHEVVLQDVSEKALEAAREQ---I----PEE-----LLSKIEFTTTLEK-VKDCDI   76 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-T--TSEEEEECSCHHHHHHHHHH---S----CGG-----GGGGEEEESSCTT-GGGCSE
T ss_pred             CeEEEEeeCHHHHHHHHHHH-c--CCEEEEEECCHHHHHHHHHH---H----HHH-----HhCCeEEeCCHHH-HcCCCE
Confidence            68999999999999999999 8  99999999999998877653   1    011     1136888899876 899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      ||.|||...           ++  -+..+.++.+.  ++++++ ++||+++.....   .+.....-...+. ++|....
T Consensus        77 Vieavpe~~-----------~v--k~~l~~~l~~~--~~~IlasntSti~~~~~a~---~~~~~~r~~G~Hf-~~Pv~~~  137 (293)
T 1zej_A           77 VMEAVFEDL-----------NT--KVEVLREVERL--TNAPLCSNTSVISVDDIAE---RLDSPSRFLGVHW-MNPPHVM  137 (293)
T ss_dssp             EEECCCSCH-----------HH--HHHHHHHHHTT--CCSCEEECCSSSCHHHHHT---TSSCGGGEEEEEE-CSSTTTC
T ss_pred             EEEcCcCCH-----------HH--HHHHHHHHhcC--CCCEEEEECCCcCHHHHHH---HhhcccceEeEEe-cCccccC
Confidence            999998642           22  23455667665  788874 678888763322   1111000000111 2454322


Q ss_pred             ccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHh
Q 011654          161 EGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEAT  240 (480)
Q Consensus       161 ~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~  240 (480)
                      +      +    ..++++..+  ++++++++.++++.+++ .++++.+.      |+++|.+    .++++|...++++ 
T Consensus       138 ~------l----veiv~g~~t--~~~~~~~~~~l~~~lGk-~~v~v~d~------fi~Nrll----~~~~~EA~~l~~~-  193 (293)
T 1zej_A          138 P------L----VEIVISRFT--DSKTVAFVEGFLRELGK-EVVVCKGQ------SLVNRFN----AAVLSEASRMIEE-  193 (293)
T ss_dssp             C------E----EEEEECTTC--CHHHHHHHHHHHHHTTC-EEEEEESS------CHHHHHH----HHHHHHHHHHHHH-
T ss_pred             C------E----EEEECCCCC--CHHHHHHHHHHHHHcCC-eEEEeccc------ccHHHHH----HHHHHHHHHHHHh-
Confidence            1      1    123444322  58999999999999863 44556553      7777654    3689999999999 


Q ss_pred             CCCHHHHHHHhcCC
Q 011654          241 GADVTQVSHAIGKD  254 (480)
Q Consensus       241 Gid~~~v~~~~~~~  254 (480)
                      |+|++++.+++...
T Consensus       194 Gv~~e~id~~~~~g  207 (293)
T 1zej_A          194 GVRAEDVDRVWKHH  207 (293)
T ss_dssp             TCCHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHhc
Confidence            88999999999855

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=99.73  E-value=5e-16  Score=154.51  Aligned_cols=189  Identities=16%  Similarity=0.202  Sum_probs=138.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCE-EEecCHHH-Hh
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNL-FFSTDIEK-HV   76 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l-~~t~d~~~-a~   76 (480)
                      +|||+|||+|.||.++|..|++.  |+  +|++||+++++++.+.+.                  +.. ..++++++ ++
T Consensus        33 ~~kI~IIG~G~mG~slA~~l~~~--G~~~~V~~~dr~~~~~~~a~~~------------------G~~~~~~~~~~~~~~   92 (314)
T 3ggo_A           33 MQNVLIVGVGFMGGSFAKSLRRS--GFKGKIYGYDINPESISKAVDL------------------GIIDEGTTSIAKVED   92 (314)
T ss_dssp             CSEEEEESCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHT------------------TSCSEEESCTTGGGG
T ss_pred             CCEEEEEeeCHHHHHHHHHHHhC--CCCCEEEEEECCHHHHHHHHHC------------------CCcchhcCCHHHHhh
Confidence            37999999999999999999998  88  999999999988876642                  111 45678887 89


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCC
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNP  156 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P  156 (480)
                      ++||+||+|||..               .+.++++++.+.++++++|++.+++.+...+.+.+.+.+.      ++..+|
T Consensus        93 ~~aDvVilavp~~---------------~~~~vl~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~~------~v~~hP  151 (314)
T 3ggo_A           93 FSPDFVMLSSPVR---------------TFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKR------FVGGHP  151 (314)
T ss_dssp             GCCSEEEECSCGG---------------GHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG------EECEEE
T ss_pred             ccCCEEEEeCCHH---------------HHHHHHHHHhhccCCCcEEEECCCCcHHHHHHHHHhcCCC------EEecCc
Confidence            9999999999842               2467788999999999999998888776667776666431      233344


Q ss_pred             ----ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCCh-hHHHHhhhHHhHHHHHHHHHHH
Q 011654          157 ----EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNL-WSAELSKLAANAFLAQRISSVN  231 (480)
Q Consensus       157 ----e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~-~~ae~~Kl~~N~~~~~~ia~~n  231 (480)
                          +..++..+..+++....+++. +.+..+++.++.++++|+.++  ..++.+++ +...+++++...-..+..++++
T Consensus       152 m~G~e~sG~~~A~~~Lf~g~~~il~-~~~~~~~~~~~~v~~l~~~~G--~~v~~~~~~~hD~~~a~~s~lph~~a~~l~~  228 (314)
T 3ggo_A          152 IAGTEKSGVEYSLDNLYEGKKVILT-PTKKTDKKRLKLVKRVWEDVG--GVVEYMSPELHDYVFGVVSHLPHAVAFALVD  228 (314)
T ss_dssp             CCCCCCCSGGGCCTTTTTTCEEEEC-CCTTSCHHHHHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             ccCCcccchhhhhhhhhcCCEEEEE-eCCCCCHHHHHHHHHHHHHcC--CEEEEcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                444555566666665555443 222336889999999999985  45666554 4567888887766655566555


Q ss_pred             HH
Q 011654          232 AM  233 (480)
Q Consensus       232 E~  233 (480)
                      -+
T Consensus       229 ~~  230 (314)
T 3ggo_A          229 TL  230 (314)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=99.72  E-value=7.1e-17  Score=169.32  Aligned_cols=204  Identities=17%  Similarity=0.184  Sum_probs=141.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEecC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFSTD   71 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t~d   71 (480)
                      +||+|||+|.||.+||..|+++  |++|++||+++++++.+.+.          ...+.+...+..     ..+++++++
T Consensus         6 ~kVgVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~-----~~~i~~~~~   78 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAASH--GHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERT-----LKRLIPVTD   78 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHH-----HHTEEEECC
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH-----HhceeEeCC
Confidence            5899999999999999999998  99999999999998876531          000000001111     136888999


Q ss_pred             HHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEE-EEecCCccchHHHHHHHHHhcCCCCce
Q 011654           72 IEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIV-VEKSTVPVKTAEAIEKILTHNSREIKY  150 (480)
Q Consensus        72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iV-i~~STv~~gt~~~l~~~l~~~~~g~~~  150 (480)
                      ++ ++++||+||+|||+.             +...+++++++.+.+++++++ .+.||+++.   .+++.+....   . 
T Consensus        79 ~~-~~~~aDlVIeAVpe~-------------~~vk~~v~~~l~~~~~~~~IlasntSti~i~---~ia~~~~~p~---~-  137 (483)
T 3mog_A           79 IH-ALAAADLVIEAASER-------------LEVKKALFAQLAEVCPPQTLLTTNTSSISIT---AIAAEIKNPE---R-  137 (483)
T ss_dssp             GG-GGGGCSEEEECCCCC-------------HHHHHHHHHHHHHHSCTTCEEEECCSSSCHH---HHTTTSSSGG---G-
T ss_pred             HH-HhcCCCEEEEcCCCc-------------HHHHHHHHHHHHHhhccCcEEEecCCCCCHH---HHHHHccCcc---c-
Confidence            86 589999999999853             233467888999999999988 467888764   2222221110   1 


Q ss_pred             eEe---eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654          151 QIL---SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI  227 (480)
Q Consensus       151 ~v~---~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i  227 (480)
                      .+.   ++|....      .+    ..++++..+  ++++++.+.++++.+++ .++++.+..    .|+++|.+..   
T Consensus       138 ~ig~hf~~Pa~v~------~L----vevv~g~~T--s~e~~~~~~~l~~~lGk-~~v~v~d~~----Gfi~Nr~l~~---  197 (483)
T 3mog_A          138 VAGLHFFNPAPVM------KL----VEVVSGLAT--AAEVVEQLCELTLSWGK-QPVRCHSTP----GFIVNRVARP---  197 (483)
T ss_dssp             EEEEEECSSTTTC------CE----EEEEECSSC--CHHHHHHHHHHHHHTTC-EEEEEESCT----TTTHHHHTHH---
T ss_pred             eEEeeecChhhhC------Ce----EEEecCCCC--CHHHHHHHHHHHHHhCC-EEEEEeccC----cchHHHHHHH---
Confidence            111   2332222      11    234566432  68899999999999864 455665543    2777665443   


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          228 SSVNAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       228 a~~nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                       ++||...++++.++|++++.+++...
T Consensus       198 -~~~Ea~~l~~~g~~~~~~id~a~~~~  223 (483)
T 3mog_A          198 -YYSEAWRALEEQVAAPEVIDAALRDG  223 (483)
T ss_dssp             -HHHHHHHHHHTTCSCHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence             89999999999999999999999744

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=99.71  E-value=1.3e-16  Score=158.35  Aligned_cols=265  Identities=15%  Similarity=0.131  Sum_probs=157.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcC--C-C-CeEEEEeCCHHHHHHHHC-CCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGYVGGPTMAVIALKC--P-K-IEVAVVDISVSRIAAWNG-DQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~--~-G-~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      |||+|||+|.||.++|..|+++.  + | ++|++||+ +++++.+++ ....+.++....     ...++.++++.+ .+
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~-----~~~~~~~~~~~~-~~   81 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDF-----LARPTCVTDNPA-EV   81 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEE-----EECCSEEESCHH-HH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCe-----EEecceEecCcc-cc
Confidence            79999999999999999998740  0 5 89999999 888998886 433222111000     001245566665 47


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEee-C
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILS-N  155 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~  155 (480)
                      .++|+||+|||++.               +.++++++.+.++++++||..++ ..+..+.+.+.+.+...  -..+.+ .
T Consensus        82 ~~~D~vil~vk~~~---------------~~~v~~~i~~~l~~~~~iv~~~n-G~~~~~~l~~~l~~~~v--~~g~~~~~  143 (317)
T 2qyt_A           82 GTVDYILFCTKDYD---------------MERGVAEIRPMIGQNTKILPLLN-GADIAERMRTYLPDTVV--WKGCVYIS  143 (317)
T ss_dssp             CCEEEEEECCSSSC---------------HHHHHHHHGGGEEEEEEEEECSC-SSSHHHHHTTTSCTTTB--CEEEEEEE
T ss_pred             CCCCEEEEecCccc---------------HHHHHHHHHhhcCCCCEEEEccC-CCCcHHHHHHHCCCCcE--EEEEEEEE
Confidence            89999999998642               36788889988888888776543 45555555444432110  011112 2


Q ss_pred             CccccccccccccCCCCeEEEEeC-CCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHH-----------
Q 011654          156 PEFLAEGTAIQDLFNPDRVLIGGR-ETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFL-----------  223 (480)
Q Consensus       156 Pe~~~~G~a~~~~~~~~~vviG~~-~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~-----------  223 (480)
                      ..+.+||...+.. ....+++|+. +.. +.+.. .+.++|+..+. ...+..++..++|.|++.|+..           
T Consensus       144 a~~~~pg~~~~~~-~g~~~~ig~~~~~~-~~~~~-~~~~ll~~~g~-~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~  219 (317)
T 2qyt_A          144 ARKSAPGLITLEA-DRELFYFGSGLPEQ-TDDEV-RLAELLTAAGI-RAYNPTDIDWYIMKKFMMISVTATATAYFDKPI  219 (317)
T ss_dssp             EEEEETTEEEEEE-EEEEEEEECCSSSC-CHHHH-HHHHHHHHTTC-CEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCH
T ss_pred             EEEcCCCEEEEcC-CCceEEEcCCCCCC-cCHHH-HHHHHHHHCCC-CCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCH
Confidence            2233445432211 1112336753 221 24556 88999998752 2345579999999999999853           


Q ss_pred             --------HHHHHHHHHHHHHHHHhCCCHH--HHHHHhcC----CCCC-CCccccCCCCCcccchhhhHHHHHHHHHHcC
Q 011654          224 --------AQRISSVNAMSALCEATGADVT--QVSHAIGK----DTRI-GPRFLNSSVGFGGSCFQKDILNLVYICECNG  288 (480)
Q Consensus       224 --------~~~ia~~nE~~~l~~~~Gid~~--~v~~~~~~----~~~~-~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g  288 (480)
                              .+..+.++|+..+++++|+++.  .+.+.+..    .++. .+...+...|.--. +-....+++++++++|
T Consensus       220 g~~~~~~~~~~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~~~~~~~~~~~sm~~d~~~g~~~E-~~~~~g~~~~~a~~~g  298 (317)
T 2qyt_A          220 GSILTEHEPELLSLLEEVAELFRAKYGQVPDDVVQQLLDKQRKMPPESTSSMHSDFLQGGSTE-VETLTGYVVREAEALR  298 (317)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHC---------------------CTTTHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhccCCCCCChHHHHHHcCCccC-HHHHhhHHHHHHHHcC
Confidence                    5677999999999999999863  34443321    1111 11111111111100 1112568889999999


Q ss_pred             CchhhhHHHH
Q 011654          289 LTEVANYWKQ  298 (480)
Q Consensus       289 ~~~~~~~~~~  298 (480)
                      ++  .++.+.
T Consensus       299 v~--~P~~~~  306 (317)
T 2qyt_A          299 VD--LPMYKR  306 (317)
T ss_dssp             CC--CHHHHH
T ss_pred             CC--CCHHHH
Confidence            98  555443

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=99.71  E-value=8.2e-17  Score=163.31  Aligned_cols=217  Identities=15%  Similarity=0.131  Sum_probs=158.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC--------eEEEEeCCHH-----HHHHHHCC-CCCCCCCChHHHHHhhcCCCEE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI--------EVAVVDISVS-----RIAAWNGD-QLPIYEPGLEDVVTQCRGRNLF   67 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~--------~V~~~D~~~~-----~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~   67 (480)
                      .||+|||+|.||+++|..|+++  ||        +|.+|.++++     .++.+++. .++.|.|++.      .+.+++
T Consensus        35 ~KI~ViGaGsWGTALA~~la~n--g~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~------Lp~~i~  106 (391)
T 4fgw_A           35 FKVTVIGSGNWGTTIAKVVAEN--CKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGIT------LPDNLV  106 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH--HHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCC------CCSSEE
T ss_pred             CeEEEECcCHHHHHHHHHHHHc--CCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCc------CCCCcE
Confidence            4899999999999999999987  54        5999998865     46777764 4666777653      246799


Q ss_pred             EecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-CccchH--HHHHHHHHhc
Q 011654           68 FSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VPVKTA--EAIEKILTHN  144 (480)
Q Consensus        68 ~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~--~~l~~~l~~~  144 (480)
                      +++|++++++++|+||++||+.               +++++++++.++++++.++|..+. +.+++.  +.+.+.+.+.
T Consensus       107 ~t~dl~~al~~ad~ii~avPs~---------------~~r~~l~~l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~  171 (391)
T 4fgw_A          107 ANPDLIDSVKDVDIIVFNIPHQ---------------FLPRICSQLKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEE  171 (391)
T ss_dssp             EESCHHHHHTTCSEEEECSCGG---------------GHHHHHHHHTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHH
T ss_pred             EeCCHHHHHhcCCEEEEECChh---------------hhHHHHHHhccccCCCceeEEeccccccccccchhHHHHHHHH
Confidence            9999999999999999999863               378899999999999998887764 454442  3455655554


Q ss_pred             CCCCceeEeeCCccccccccccccCCCCeEEEEeCCCcc-----hHHHHHHHHHHHhccCCCCeEEe-CChhHHHHh---
Q 011654          145 SREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPE-----GQKAIQALKDVYAHWVPEDRIIT-TNLWSAELS---  215 (480)
Q Consensus       145 ~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~-----~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~---  215 (480)
                      . +..+.++++|.++.+-..    ..|..+++++.+...     ++...+.++++|..-  ..+++. .|+...|+.   
T Consensus       172 ~-~~~~~vLsGPs~A~EVa~----~~pta~~iA~~~~~~~~~~~~~~~a~~~~~lf~~~--~frvy~s~DviGvElgGAl  244 (391)
T 4fgw_A          172 L-GIQCGALSGANIATEVAQ----EHWSETTVAYHIPKDFRGEGKDVDHKVLKALFHRP--YFHVSVIEDVAGISICGAL  244 (391)
T ss_dssp             H-CCEEEEEECSCCHHHHHT----TCCEEEEEECCCCTTCCCSSSSCCHHHHHHHHCBT--TEEEEEESCHHHHHHHHHH
T ss_pred             h-CccceeccCCchHHHhhc----CCCceEEEEecChhhhhhhhHHHHHHHHHHHhCCC--CEEEEEeCCccceehHHHH
Confidence            3 246778999998876432    245567777653211     122346788888863  235554 688777765   


Q ss_pred             --------------hhHHhHHHHHHHHHHHHHHHHHHHh---CCCHHHHH
Q 011654          216 --------------KLAANAFLAQRISSVNAMSALCEAT---GADVTQVS  248 (480)
Q Consensus       216 --------------Kl~~N~~~~~~ia~~nE~~~l~~~~---Gid~~~v~  248 (480)
                                    ++-.|+..++....++||.+|+.++   |.+...+.
T Consensus       245 KNViAIAaGi~dGlg~G~NakAALitrGl~Em~rlg~al~~~g~~~tt~~  294 (391)
T 4fgw_A          245 KNVVALGCGFVEGLGWGNNASAAIQRVGLGEIIRFGQMFFPESREETYYQ  294 (391)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHhcccCCceeec
Confidence                          5667889999999999999999998   44444443

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=99.71  E-value=2.6e-17  Score=161.32  Aligned_cols=253  Identities=15%  Similarity=0.118  Sum_probs=158.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||.++|..|+++  |++|++||+++++++.++....    .+. .+     ...+. +++. ++++++|+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~r~~~~~~~l~~~~~----~~~-~~-----~~~~~-~~~~-~~~~~~d~   66 (291)
T 1ks9_A            1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSVNLVET----DGS-IF-----NESLT-ANDP-DFLATSDL   66 (291)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEEEEECT----TSC-EE-----EEEEE-ESCH-HHHHTCSE
T ss_pred             CeEEEECcCHHHHHHHHHHHhC--CCCEEEEEcCccceeeEEEEcC----CCc-ee-----eeeee-ecCc-cccCCCCE
Confidence            7999999999999999999998  9999999999876554432110    000 00     00122 3444 45789999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCc--eeEeeCCccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIK--YQILSNPEFL  159 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~--~~v~~~Pe~~  159 (480)
                      ||+|||++               .+.++++++.+.++++++|+..++ ..++.+.+.+.+.+...+..  .....+| . 
T Consensus        67 vi~~v~~~---------------~~~~v~~~l~~~l~~~~~vv~~~~-g~~~~~~l~~~~~~~~~g~~~~~~~~~~p-~-  128 (291)
T 1ks9_A           67 LLVTLKAW---------------QVSDAVKSLASTLPVTTPILLIHN-GMGTIEELQNIQQPLLMGTTTHAARRDGN-V-  128 (291)
T ss_dssp             EEECSCGG---------------GHHHHHHHHHTTSCTTSCEEEECS-SSCTTGGGTTCCSCEEEEEECCEEEEETT-E-
T ss_pred             EEEEecHH---------------hHHHHHHHHHhhCCCCCEEEEecC-CCCcHHHHHHhcCCeEEEEEeEccEEcCC-E-
Confidence            99999853               147788899999998888877643 44554444333322000000  0012344 2 


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHH----------------
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFL----------------  223 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~----------------  223 (480)
                          .. ..... ++.+|....  +++..+.++++|+..+. ..++..++..+.+.|++.|+..                
T Consensus       129 ----~~-~~~~g-~~~i~~~~~--~~~~~~~~~~ll~~~g~-~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~  199 (291)
T 1ks9_A          129 ----II-HVANG-ITHIGPARQ--QDGDYSYLADILQTVLP-DVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRH  199 (291)
T ss_dssp             ----EE-EEECC-CEEEEESSG--GGTTCTHHHHHHHTTSS-CEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGG
T ss_pred             ----EE-Eeccc-ceEEccCCC--CcchHHHHHHHHHhcCC-CCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHh
Confidence                11 11122 244554211  34567789999998753 3455679999999999999977                


Q ss_pred             --HHHHHHHHHHHHHHHHhCCCH--HHH----HHHhcCCC-CCCCccccCCCCCcccchhhhHHHHHHHHHHcCCchhhh
Q 011654          224 --AQRISSVNAMSALCEATGADV--TQV----SHAIGKDT-RIGPRFLNSSVGFGGSCFQKDILNLVYICECNGLTEVAN  294 (480)
Q Consensus       224 --~~~ia~~nE~~~l~~~~Gid~--~~v----~~~~~~~~-~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~~~~~~  294 (480)
                        ++....++|+..+++++|++.  .++    .+.+...+ ..++++.....|..- -+-.+..+++++++++|++  .+
T Consensus       200 ~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~~~ssm~~d~~~g~~~-e~~~~~g~~~~~a~~~gv~--~P  276 (291)
T 1ks9_A          200 HPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAENISSMLQDIRALRHT-EIDYINGFLLRRARAHGIA--VP  276 (291)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTTCCCHHHHHHHTTCCC-SGGGTHHHHHHHHHHHTCC--CH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCCCChHHHHHHcCCcc-HHHHHHHHHHHHHHHhCCC--CC
Confidence              788999999999999999986  444    33333211 111121111111111 1335778899999999998  55


Q ss_pred             HHHH
Q 011654          295 YWKQ  298 (480)
Q Consensus       295 ~~~~  298 (480)
                      +.+.
T Consensus       277 ~~~~  280 (291)
T 1ks9_A          277 ENTR  280 (291)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=99.71  E-value=3.3e-16  Score=154.94  Aligned_cols=207  Identities=16%  Similarity=0.143  Sum_probs=135.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh--------------hcCCCE
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ--------------CRGRNL   66 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~--------------~~~~~l   66 (480)
                      |+||+|||+|.||.++|..|+++  |++|++||+++++++.+++...    ..++.++..              ....++
T Consensus        15 ~~~I~VIG~G~mG~~iA~~la~~--G~~V~~~d~~~~~~~~~~~~i~----~~l~~~~~~g~~~~~~~~~~~~~~~~~~i   88 (302)
T 1f0y_A           15 VKHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTEDILAKSKKGIE----ESLRKVAKKKFAENPKAGDEFVEKTLSTI   88 (302)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHH----HHHHHHHHTTSSSCHHHHHHHHHHHHHTE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHH----HHHHHHHHcCCCCccccchhhHHHHHhce
Confidence            47899999999999999999998  9999999999998876532100    000011000              001258


Q ss_pred             EEecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEE-ecCCccchHHHHHHHHHhcC
Q 011654           67 FFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVE-KSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        67 ~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~  145 (480)
                      ++++|+++++++||+||+|||++.             .....+++++.++++++++|+. .|++++.   .+.+.+....
T Consensus        89 ~~~~~~~~~~~~aD~Vi~avp~~~-------------~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~---~l~~~~~~~~  152 (302)
T 1f0y_A           89 ATSTDAASVVHSTDLVVEAIVENL-------------KVKNELFKRLDKFAAEHTIFASNTSSLQIT---SIANATTRQD  152 (302)
T ss_dssp             EEESCHHHHTTSCSEEEECCCSCH-------------HHHHHHHHHHTTTSCTTCEEEECCSSSCHH---HHHTTSSCGG
T ss_pred             EEecCHHHhhcCCCEEEEcCcCcH-------------HHHHHHHHHHHhhCCCCeEEEECCCCCCHH---HHHHhcCCcc
Confidence            889999888999999999998532             2235678889889988888764 3555543   2322221100


Q ss_pred             CCCceeEe---eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHH
Q 011654          146 REIKYQIL---SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAF  222 (480)
Q Consensus       146 ~g~~~~v~---~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~  222 (480)
                         .+ +.   ++|.+..+.          ..++++..  .+++..+.+.++|+.++. .++++.+..    .++++|. 
T Consensus       153 ---~~-~g~h~~~P~~~~~~----------~~i~~g~~--~~~e~~~~~~~l~~~~G~-~~v~~~~~~----g~i~nr~-  210 (302)
T 1f0y_A          153 ---RF-AGLHFFNPVPVMKL----------VEVIKTPM--TSQKTFESLVDFSKALGK-HPVSCKDTP----GFIVNRL-  210 (302)
T ss_dssp             ---GE-EEEEECSSTTTCCE----------EEEECCTT--CCHHHHHHHHHHHHHTTC-EEEEECSCT----TTTHHHH-
T ss_pred             ---cE-EEEecCCCcccCce----------EEEeCCCC--CCHHHHHHHHHHHHHcCC-ceEEecCcc----cccHHHH-
Confidence               11 11   234332211          12344432  258899999999999863 344444421    1444443 


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          223 LAQRISSVNAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       223 ~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                         .++++||...++++.++|++++..++...
T Consensus       211 ---l~~~~~Ea~~l~~~g~~~~~~id~~~~~g  239 (302)
T 1f0y_A          211 ---LVPYLMEAIRLYERGDASKEDIDTAMKLG  239 (302)
T ss_dssp             ---HHHHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence               35789999999999999999999988643

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=99.70  E-value=1.9e-16  Score=159.97  Aligned_cols=296  Identities=18%  Similarity=0.176  Sum_probs=175.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC-CCCCCCCChHHHHHhhcCCCE-EEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD-QLPIYEPGLEDVVTQCRGRNL-FFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l-~~t~d~~~a~~~a   79 (480)
                      |||+|||+|.||..+|..|+++  |++|++||+++++++.+++. ...+.+.+++.      ..++ .++++++++++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~   76 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAG------TAHPDLLTSDIGLAVKDA   76 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCE------EECCSEEESCHHHHHTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHhcCCeEEecccccc------ccccceecCCHHHHHhcC
Confidence            7999999999999999999998  99999999999999988753 22211111100      0122 4678888888999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCce-e--EeeCC
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKY-Q--ILSNP  156 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~-~--v~~~P  156 (480)
                      |+||+|||++.               ..++++++.+.++++++|+...++.+++.+ +.+.+.+.+. ..+ +  +..+|
T Consensus        77 D~vi~~v~~~~---------------~~~~~~~l~~~l~~~~~vv~~~~~~~~~~~-~~~~l~~~~~-~~v~~~~~~~~~  139 (359)
T 1bg6_A           77 DVILIVVPAIH---------------HASIAANIASYISEGQLIILNPGATGGALE-FRKILRENGA-PEVTIGETSSML  139 (359)
T ss_dssp             SEEEECSCGGG---------------HHHHHHHHGGGCCTTCEEEESSCCSSHHHH-HHHHHHHTTC-CCCEEEEESSCS
T ss_pred             CEEEEeCCchH---------------HHHHHHHHHHhCCCCCEEEEcCCCchHHHH-HHHHHHhcCC-CCeEEEEecCCc
Confidence            99999998642               367788899999999988876443445433 4555655421 122 1  12355


Q ss_pred             ccc---cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhH-------------------HHH
Q 011654          157 EFL---AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWS-------------------AEL  214 (480)
Q Consensus       157 e~~---~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~-------------------ae~  214 (480)
                      ...   +||... .+....++.+|......+++..+.++++|..+.     ...++..                   ...
T Consensus       140 ~~~~~~gpg~v~-~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~-----~~~di~~k~~~nvn~~~n~~~al~~~~~~  213 (359)
T 1bg6_A          140 FTCRSERPGQVT-VNAIKGAMDFACLPAAKAGWALEQIGSVLPQYV-----AVENVLHTSLTNVNAVMHPLPTLLNAARC  213 (359)
T ss_dssp             EEEECSSTTEEE-EEEECSCEEEEEESGGGHHHHHHHHTTTCTTEE-----ECSCHHHHHHCCHHHHHTHHHHHTTHHHH
T ss_pred             EEEEeCCCCEEE-EEEeecceEEEeccccccHHHHHHHHHHhhhcE-----EcCChHhhhccCCCccccHHHHHhhhchh
Confidence            432   345332 111123456675322224556777777775531     1123211                   001


Q ss_pred             hh---hH------HhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCC---C-------CCcccc--CCC-CCcccc
Q 011654          215 SK---LA------ANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTR---I-------GPRFLN--SSV-GFGGSC  272 (480)
Q Consensus       215 ~K---l~------~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~---~-------~~~~~~--pg~-g~gg~c  272 (480)
                      .|   +.      .|..+.+....++|+..+++++|+++.++.+.+.....   .       .+.++.  .++ .+-+.-
T Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~sm~~d~~~~~e~~~~~  293 (359)
T 1bg6_A          214 ESGTPFQYYLEGITPSVGSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAYRGIAGPINLNTRY  293 (359)
T ss_dssp             HTTCCCBHHHHHCCHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGGTTCBCCSSSCCHH
T ss_pred             hcCCccchhhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhCCCcccHHHHHhcchhhcCCCCCCCCCccc
Confidence            11   11      22346777889999999999999988666666543110   0       011111  011 133336


Q ss_pred             hhhhH----HHHHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHHhcCcC--CCCEEEEEeeccCCCCCccc
Q 011654          273 FQKDI----LNLVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSSMFNTV--SGKKIAILGFAFKKDTGDTR  342 (480)
Q Consensus       273 l~kD~----~~l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~--~~~~v~ilGla~K~~~~d~r  342 (480)
                      +.||+    .+++++|+++|++  .++.+.+.+           .+.....+..  .++++..+|++ +.+++|+|
T Consensus       294 ~~~D~~~~~g~~~~~a~~~gv~--~P~~~~l~~-----------~~~~~~~~~~~~~g~~~~~lgl~-~~~~~~~~  355 (359)
T 1bg6_A          294 FFEDVSTGLVPLSELGRAVNVP--TPLIDAVLD-----------LISSLIDTDFRKEGRTLEKLGLS-GLTAAGIR  355 (359)
T ss_dssp             HHHHHHTTHHHHHHHHHHTTCC--CHHHHHHHH-----------HHHHHTTCCHHHHSCCTTTTTCT-TCCHHHHH
T ss_pred             eecCcCccHHHHHHHHHHcCCC--chHHHHHHH-----------HHHHHHCCChhhcCCCHHhcCCC-CCCHHHHH
Confidence            67887    6889999999998  565544322           1111111111  36678888998 77777765

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=99.70  E-value=2.8e-16  Score=162.72  Aligned_cols=201  Identities=18%  Similarity=0.211  Sum_probs=135.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH--------HH-HCCCCCCCCCChHHHHHhhcCCCEEEecC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIA--------AW-NGDQLPIYEPGLEDVVTQCRGRNLFFSTD   71 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~--------~l-~~~~~~~~e~~l~~l~~~~~~~~l~~t~d   71 (480)
                      |+||+|||+|.||.+||..|+++  |++|++||+++++..        .+ .+|...  +...+.+     ..++++++|
T Consensus        54 i~kVaVIGaG~MG~~IA~~la~a--G~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~--~~~~~~~-----~~~i~~t~d  124 (460)
T 3k6j_A           54 VNSVAIIGGGTMGKAMAICFGLA--GIETFLVVRNEQRCKQELEVMYAREKSFKRLN--DKRIEKI-----NANLKITSD  124 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHTTSCC--HHHHHHH-----HTTEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECcHHHHHHHHHHHHHHHHHcCCCC--HHHHHHH-----hcceEEeCC
Confidence            57999999999999999999998  999999999998432        11 222110  0001111     246889999


Q ss_pred             HHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCCCCce
Q 011654           72 IEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSREIKY  150 (480)
Q Consensus        72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~  150 (480)
                      ++ ++++||+||+|||+.             +...+.+++++.+.++++++|+ ++||+++.   .+++.+...   .. 
T Consensus       125 l~-al~~aDlVIeAVpe~-------------~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~---~ia~~~~~p---~r-  183 (460)
T 3k6j_A          125 FH-KLSNCDLIVESVIED-------------MKLKKELFANLENICKSTCIFGTNTSSLDLN---EISSVLRDP---SN-  183 (460)
T ss_dssp             GG-GCTTCSEEEECCCSC-------------HHHHHHHHHHHHTTSCTTCEEEECCSSSCHH---HHHTTSSSG---GG-
T ss_pred             HH-HHccCCEEEEcCCCC-------------HHHHHHHHHHHHhhCCCCCEEEecCCChhHH---HHHHhccCC---cc-
Confidence            86 589999999999853             2334678889999999999885 45677653   232222110   01 


Q ss_pred             eEe---eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654          151 QIL---SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI  227 (480)
Q Consensus       151 ~v~---~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i  227 (480)
                      ++.   ++|....+      +.   .|+ .+..  +++++++.+.++++.+++ .++++.+.     .+++.|.+.   .
T Consensus       184 ~iG~HffnPv~~m~------Lv---EIv-~g~~--Ts~e~~~~~~~l~~~lGk-~~v~v~d~-----pGfi~Nril---~  242 (460)
T 3k6j_A          184 LVGIHFFNPANVIR------LV---EII-YGSH--TSSQAIATAFQACESIKK-LPVLVGNC-----KSFVFNRLL---H  242 (460)
T ss_dssp             EEEEECCSSTTTCC------EE---EEE-CCSS--CCHHHHHHHHHHHHHTTC-EEEEESSC-----CHHHHHHHH---H
T ss_pred             eEEEEecchhhhCC------EE---EEE-eCCC--CCHHHHHHHHHHHHHhCC-EEEEEecc-----cHHHHHHHH---H
Confidence            121   23433221      11   244 4432  268999999999999864 45666652     224555333   4


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHhc
Q 011654          228 SSVNAMSALCEATGADVTQVSHAIG  252 (480)
Q Consensus       228 a~~nE~~~l~~~~Gid~~~v~~~~~  252 (480)
                      ++++|+..++++.|+|++++.+++.
T Consensus       243 ~~~~EA~~l~~~~Ga~~e~ID~a~~  267 (460)
T 3k6j_A          243 VYFDQSQKLMYEYGYLPHQIDKIIT  267 (460)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            6899999999999999999999986

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=99.68  E-value=3.9e-15  Score=146.23  Aligned_cols=175  Identities=15%  Similarity=0.168  Sum_probs=123.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ||||+|||+|.||.++|..|++++.|++|++||+++++.+.+.+...                 ....+++++++++++|
T Consensus         6 ~~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~-----------------~~~~~~~~~~~~~~aD   68 (290)
T 3b1f_A            6 EKTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGI-----------------VDEATADFKVFAALAD   68 (290)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTS-----------------CSEEESCTTTTGGGCS
T ss_pred             cceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCC-----------------cccccCCHHHhhcCCC
Confidence            48999999999999999999987446899999999999887764210                 0135667777789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhh-CCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCC---
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV-SNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNP---  156 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P---  156 (480)
                      +||+|||.+               .+.++++++.+. ++++++|++.|++.++..+.+.+.+.+..  ..| +..+|   
T Consensus        69 vVilavp~~---------------~~~~v~~~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~--~~~-v~~~P~~g  130 (290)
T 3b1f_A           69 VIILAVPIK---------------KTIDFIKILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKP--VQF-VGSHPMAG  130 (290)
T ss_dssp             EEEECSCHH---------------HHHHHHHHHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSS--CEE-EEEEEC--
T ss_pred             EEEEcCCHH---------------HHHHHHHHHHhcCCCCCCEEEECCCCchHHHHHHHHhccccC--CEE-EEeCCcCC
Confidence            999999852               246788889888 88999999888887777777777765421  222 33344   


Q ss_pred             -ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHH
Q 011654          157 -EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAE  213 (480)
Q Consensus       157 -e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae  213 (480)
                       +..+++.+..+++....+++... ...+++..+.++++|+.++  ..++..+.+..+
T Consensus       131 ~~~~g~~~a~~~l~~g~~~~~~~~-~~~~~~~~~~v~~l~~~~G--~~~~~~~~~~~d  185 (290)
T 3b1f_A          131 SHKSGAVAANVNLFENAYYIFSPS-CLTKPNTIPALQDLLSGLH--ARYVEIDAAEHD  185 (290)
T ss_dssp             ---CCTTSCCTTTTTTSEEEEEEC-TTCCTTHHHHHHHHTGGGC--CEEEECCHHHHH
T ss_pred             CCcchHHHhhHHHhCCCeEEEecC-CCCCHHHHHHHHHHHHHcC--CEEEEcCHHHHH
Confidence             33456666556666655544422 1224678899999999985  466666655433

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.67  E-value=2.5e-15  Score=147.27  Aligned_cols=207  Identities=14%  Similarity=0.171  Sum_probs=138.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCC-----------CCCCCChHHHHHhhcCCCEEEe
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQL-----------PIYEPGLEDVVTQCRGRNLFFS   69 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~-----------~~~e~~l~~l~~~~~~~~l~~t   69 (480)
                      |+||+|||+|.||.++|..|+.+  |++|++||+++++++.+.+...           .+.....+...     .+++++
T Consensus         4 ~~kV~VIGaG~mG~~iA~~la~~--G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~-----~~i~~~   76 (283)
T 4e12_A            4 ITNVTVLGTGVLGSQIAFQTAFH--GFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKAL-----GGIRYS   76 (283)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHH-----HHCEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-----cCeEEe
Confidence            35899999999999999999998  9999999999998887664200           01111111111     246788


Q ss_pred             cCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEE-ecCCccchHHHHHHHHHhcCCCC
Q 011654           70 TDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVE-KSTVPVKTAEAIEKILTHNSREI  148 (480)
Q Consensus        70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~~g~  148 (480)
                      +++++++++||+||+|||..             ......+++++.+.++++++++. .|++++   ..+.+.+....   
T Consensus        77 ~~~~~~~~~aDlVi~av~~~-------------~~~~~~v~~~l~~~~~~~~il~s~tS~~~~---~~la~~~~~~~---  137 (283)
T 4e12_A           77 DDLAQAVKDADLVIEAVPES-------------LDLKRDIYTKLGELAPAKTIFATNSSTLLP---SDLVGYTGRGD---  137 (283)
T ss_dssp             SCHHHHTTTCSEEEECCCSC-------------HHHHHHHHHHHHHHSCTTCEEEECCSSSCH---HHHHHHHSCGG---
T ss_pred             CCHHHHhccCCEEEEeccCc-------------HHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCCCc---
Confidence            99998889999999999853             23356778899999999998874 455553   33444443211   


Q ss_pred             ceeEe---eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHH
Q 011654          149 KYQIL---SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQ  225 (480)
Q Consensus       149 ~~~v~---~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~  225 (480)
                      .+ +.   ++|....+.          ..++++.  .++++..+.+.++++.+++ .++.+....    ..++.|.+   
T Consensus       138 ~~-ig~h~~~p~~~~~l----------vevv~~~--~t~~~~~~~~~~l~~~~g~-~~v~v~~~~----~g~i~nr~---  196 (283)
T 4e12_A          138 KF-LALHFANHVWVNNT----------AEVMGTT--KTDPEVYQQVVEFASAIGM-VPIELKKEK----AGYVLNSL---  196 (283)
T ss_dssp             GE-EEEEECSSTTTSCE----------EEEEECT--TSCHHHHHHHHHHHHHTTC-EEEECSSCC----TTTTHHHH---
T ss_pred             ce-EEEccCCCcccCce----------EEEEeCC--CCCHHHHHHHHHHHHHcCC-EEEEEecCC----CCEEehHH---
Confidence            11 11   234322211          1234543  2368899999999999863 344442111    12344432   


Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHhcCC
Q 011654          226 RISSVNAMSALCEATGADVTQVSHAIGKD  254 (480)
Q Consensus       226 ~ia~~nE~~~l~~~~Gid~~~v~~~~~~~  254 (480)
                      ..++++|...++++.++|++++.+++...
T Consensus       197 ~~~~~~ea~~l~~~g~~~~~~id~~~~~~  225 (283)
T 4e12_A          197 LVPLLDAAAELLVDGIADPETIDKTWRIG  225 (283)
T ss_dssp             HHHHHHHHHHHHHTTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHhc
Confidence            34689999999999999999999998753

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=99.66  E-value=1.5e-15  Score=147.34  Aligned_cols=197  Identities=13%  Similarity=0.052  Sum_probs=134.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIE-VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|.||..+|..|++.  |++ |++||+++++.+.+.+.                  -++..+++++++++++|
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~--g~~~v~~~~~~~~~~~~~~~~------------------~g~~~~~~~~~~~~~~D   70 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRK--GFRIVQVYSRTEESARELAQK------------------VEAEYTTDLAEVNPYAK   70 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSHHHHHHHHHH------------------TTCEEESCGGGSCSCCS
T ss_pred             CeEEEEcCCHHHHHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHH------------------cCCceeCCHHHHhcCCC
Confidence            7899999999999999999998  898 99999999998887642                  12456778888788999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      +||+|+|.+               .+.++++++.+.++++++|++.|+..+...  +.+.+.+.    ......+|-...
T Consensus        71 vvi~av~~~---------------~~~~v~~~l~~~~~~~~ivv~~s~~~~~~~--l~~~~~~~----~~~~~~~~~~g~  129 (266)
T 3d1l_A           71 LYIVSLKDS---------------AFAELLQGIVEGKREEALMVHTAGSIPMNV--WEGHVPHY----GVFYPMQTFSKQ  129 (266)
T ss_dssp             EEEECCCHH---------------HHHHHHHHHHTTCCTTCEEEECCTTSCGGG--STTTCSSE----EEEEECCCC---
T ss_pred             EEEEecCHH---------------HHHHHHHHHHhhcCCCcEEEECCCCCchHH--HHHHHHhc----cCcCCceecCCC
Confidence            999999842               247778888888889999998887644322  32222211    111233442111


Q ss_pred             ccccccccCCCCeEEE-EeCCCcchHHHHHHHHHHHhccCCCCeEEeCChh---HHHHhhhHHhHHHHHHHHHHHHHHHH
Q 011654          161 EGTAIQDLFNPDRVLI-GGRETPEGQKAIQALKDVYAHWVPEDRIITTNLW---SAELSKLAANAFLAQRISSVNAMSAL  236 (480)
Q Consensus       161 ~G~a~~~~~~~~~vvi-G~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~---~ae~~Kl~~N~~~~~~ia~~nE~~~l  236 (480)
                      +.   ..+.+.+ +++ |+     +++..+.++++|+.++. ..++..+..   ...++|+++|..  ..+..++|.  +
T Consensus       130 ~~---~~~~~~~-~~v~~~-----~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~ea--l  195 (266)
T 3d1l_A          130 RE---VDFKEIP-FFIEAS-----STEDAAFLKAIASTLSN-RVYDADSEQRKSLHLAAVFTCNFT--NHMYALAAE--L  195 (266)
T ss_dssp             CC---CCCTTCC-EEEEES-----SHHHHHHHHHHHHTTCS-CEEECCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--H
T ss_pred             ch---hhcCCCe-EEEecC-----CHHHHHHHHHHHHhcCC-cEEEeCHHHHHHHHHHHHHHHHHH--HHHHHHHHH--H
Confidence            11   1223333 445 44     37889999999999852 334444332   568899998862  234445553  7


Q ss_pred             HHHhCCCHHHHHHHhcC
Q 011654          237 CEATGADVTQVSHAIGK  253 (480)
Q Consensus       237 ~~~~Gid~~~v~~~~~~  253 (480)
                      +++.|+|.+++.+++..
T Consensus       196 ~~~~Gl~~~~~~~l~~~  212 (266)
T 3d1l_A          196 LKKYNLPFDVMLPLIDE  212 (266)
T ss_dssp             HHHTTCCGGGGHHHHHH
T ss_pred             HHHcCCCHHHHHHHHHH
Confidence            78999999988877764

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=99.66  E-value=8.5e-15  Score=142.91  Aligned_cols=189  Identities=13%  Similarity=0.079  Sum_probs=130.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||.++|..|++.  |++|++||+++++++.+++...                 ...++++++++ .++|+
T Consensus         1 m~i~iiG~G~~G~~~a~~l~~~--g~~V~~~~~~~~~~~~~~~~g~-----------------~~~~~~~~~~~-~~~D~   60 (279)
T 2f1k_A            1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQL-----------------VDEAGQDLSLL-QTAKI   60 (279)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTS-----------------CSEEESCGGGG-TTCSE
T ss_pred             CEEEEEcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHhCCC-----------------CccccCCHHHh-CCCCE
Confidence            7999999999999999999998  8999999999999888764211                 01356778887 89999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAE  161 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~  161 (480)
                      ||+|||..               .+.++++++.+.++++++|++.+++.+...+.+.+.+...   ...+-+.+++..+|
T Consensus        61 vi~av~~~---------------~~~~~~~~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~---~~~~p~~g~~~~gp  122 (279)
T 2f1k_A           61 IFLCTPIQ---------------LILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGF---IGGHPMAGTAAQGI  122 (279)
T ss_dssp             EEECSCHH---------------HHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHSTTC---EEEEECCCCSCSSG
T ss_pred             EEEECCHH---------------HHHHHHHHHHhhCCCCCEEEECCCCcHHHHHHHHHHhCCE---eecCcccCCccCCH
Confidence            99999842               3577888999999999999887777665555554433210   01111223344556


Q ss_pred             cccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHH
Q 011654          162 GTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSV  230 (480)
Q Consensus       162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~  230 (480)
                      +.+..+++....+++... ...+++..+.++++|+.++. ..++..+....+++|++.|.-..+..+++
T Consensus       123 ~~a~~~~~~g~~~~~~~~-~~~~~~~~~~v~~l~~~~g~-~~~~~~~~~~~~~~~~~~~~p~~i~~al~  189 (279)
T 2f1k_A          123 DGAEENLFVNAPYVLTPT-EYTDPEQLACLRSVLEPLGV-KIYLCTPADHDQAVAWISHLPVMVSAALI  189 (279)
T ss_dssp             GGCCTTTTTTCEEEEEEC-TTCCHHHHHHHHHHHGGGTC-EEEECCHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHhHHHhCCCcEEEecC-CCCCHHHHHHHHHHHHHcCC-EEEEcCHHHHHHHHHHHhhHHHHHHHHHH
Confidence            666555555433433321 12257889999999999852 23445667889999999997554444443

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=99.66  E-value=9.3e-16  Score=168.28  Aligned_cols=202  Identities=16%  Similarity=0.196  Sum_probs=135.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh---------hcCCCEEEecC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ---------CRGRNLFFSTD   71 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~---------~~~~~l~~t~d   71 (480)
                      |+||+|||+|.||.+||..|+++  |++|++||+++++++...+..    +..++.++..         ...+++++++|
T Consensus       314 i~kV~VIGaG~MG~~iA~~la~a--G~~V~l~D~~~~~~~~~~~~i----~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d  387 (715)
T 1wdk_A          314 VKQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEA----AKLLVGRVDKGRMTPAKMAEVLNGIRPTLS  387 (715)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHH----HHHHHHHHTTTSSCHHHHHHHHHHEEEESS
T ss_pred             CCEEEEECCChhhHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHH----HHHHHHHHhcCCCCHHHHHHHhcCeEEECC
Confidence            57899999999999999999998  999999999999887632100    0011111110         00124788889


Q ss_pred             HHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEE-ecCCccchHHHHHHHHHhcCCCCce
Q 011654           72 IEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVE-KSTVPVKTAEAIEKILTHNSREIKY  150 (480)
Q Consensus        72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~~g~~~  150 (480)
                      + +++++||+||+|||++.             ...+.+++++.++++++++|+. +||+++..   +.+.+...   ..|
T Consensus       388 ~-~~~~~aDlVIeaV~e~~-------------~vk~~v~~~l~~~~~~~~IlasntStl~i~~---la~~~~~~---~~~  447 (715)
T 1wdk_A          388 Y-GDFGNVDLVVEAVVENP-------------KVKQAVLAEVENHVREDAILASNTSTISISL---LAKALKRP---ENF  447 (715)
T ss_dssp             S-TTGGGCSEEEECCCSCH-------------HHHHHHHHHHHTTSCTTCEEEECCSSSCHHH---HGGGCSCG---GGE
T ss_pred             H-HHHCCCCEEEEcCCCCH-------------HHHHHHHHHHHhhCCCCeEEEeCCCCCCHHH---HHHHhcCc---cce
Confidence            8 56899999999998642             2346678889999999998864 56676542   32222110   011


Q ss_pred             eEe---eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654          151 QIL---SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRI  227 (480)
Q Consensus       151 ~v~---~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i  227 (480)
                       +.   ++|.+..+.         ..++ .+..+  ++++++.+.++++.+++ .++++.+.     .+++.|.+.   +
T Consensus       448 -ig~hf~~P~~~~~l---------vevv-~g~~t--~~e~~~~~~~l~~~lGk-~~v~v~d~-----~Gfi~Nril---~  505 (715)
T 1wdk_A          448 -VGMHFFNPVHMMPL---------VEVI-RGEKS--SDLAVATTVAYAKKMGK-NPIVVNDC-----PGFLVNRVL---F  505 (715)
T ss_dssp             -EEEECCSSTTTCCE---------EEEE-ECSSC--CHHHHHHHHHHHHHTTC-EEEEEESC-----TTTTHHHHH---H
T ss_pred             -EEEEccCCcccCce---------EEEE-ECCCC--CHHHHHHHHHHHHHhCC-EeEEEcCC-----CChhhhHHH---H
Confidence             11   244432211         1244 44322  58999999999999863 45666653     455666433   5


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHh
Q 011654          228 SSVNAMSALCEATGADVTQVSHAI  251 (480)
Q Consensus       228 a~~nE~~~l~~~~Gid~~~v~~~~  251 (480)
                      +++||+..++++ |+|++++.+++
T Consensus       506 ~~~~Ea~~l~~~-G~~~~~id~~~  528 (715)
T 1wdk_A          506 PYFGGFAKLVSA-GVDFVRIDKVM  528 (715)
T ss_dssp             HHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCCHHHHHHHH
Confidence            789999999997 99999999998

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=99.65  E-value=1.6e-15  Score=166.59  Aligned_cols=207  Identities=18%  Similarity=0.193  Sum_probs=136.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCC----CCCCCC-hHHHHHhhcCCCEEEecCHHHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQL----PIYEPG-LEDVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~----~~~e~~-l~~l~~~~~~~~l~~t~d~~~a   75 (480)
                      |+||+|||+|.||.+||..|+++  ||+|++||++++.++..++...    ...+.+ +...-.....+++++++|+ ++
T Consensus       312 ~~kV~VIGaG~MG~~iA~~la~a--G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~  388 (725)
T 2wtb_A          312 IKKVAIIGGGLMGSGIATALILS--NYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ES  388 (725)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTT--TCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GG
T ss_pred             CcEEEEEcCCHhhHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HH
Confidence            57899999999999999999998  9999999999998876532100    000000 0000000113568899998 46


Q ss_pred             hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEE-ecCCccchHHHHHHHHHhcCCCCceeE--
Q 011654           76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVE-KSTVPVKTAEAIEKILTHNSREIKYQI--  152 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~~g~~~~v--  152 (480)
                      +++||+||+|||++.             ...+.+++++.++++++++|+. +||+++..   +.+.+...   ..|.-  
T Consensus       389 ~~~aDlVIeaVpe~~-------------~vk~~v~~~l~~~~~~~~IlasntStl~i~~---la~~~~~p---~~~iG~h  449 (725)
T 2wtb_A          389 FRDVDMVIEAVIENI-------------SLKQQIFADLEKYCPQHCILASNTSTIDLNK---IGERTKSQ---DRIVGAH  449 (725)
T ss_dssp             GTTCSEEEECCCSCH-------------HHHHHHHHHHHHHSCTTCEEEECCSSSCHHH---HTTTCSCT---TTEEEEE
T ss_pred             HCCCCEEEEcCcCCH-------------HHHHHHHHHHHhhCCCCcEEEeCCCCCCHHH---HHHHhcCC---CCEEEec
Confidence            899999999998642             2346777889999999998854 56676642   22212110   11110  


Q ss_pred             eeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHH
Q 011654          153 LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNA  232 (480)
Q Consensus       153 ~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE  232 (480)
                      .++|.+..+      +.   .| +.+..+  ++++++.+.++++.+++ .++++.+.     .+++.|.+   .++++||
T Consensus       450 f~~P~~~~~------lv---ev-v~g~~t--~~e~~~~~~~l~~~lGk-~~v~v~d~-----~Gfi~Nri---l~~~~~E  508 (725)
T 2wtb_A          450 FFSPAHIMP------LL---EI-VRTNHT--SAQVIVDLLDVGKKIKK-TPVVVGNC-----TGFAVNRM---FFPYTQA  508 (725)
T ss_dssp             ECSSTTTCC------EE---EE-EECSSC--CHHHHHHHHHHHHHTTC-EEEEEESS-----TTTTHHHH---HHHHHHH
T ss_pred             CCCCcccCc------eE---EE-EECCCC--CHHHHHHHHHHHHHhCC-EEEEECCC-----ccHHHHHH---HHHHHHH
Confidence            134543322      11   24 444322  58999999999999863 45666653     55666643   3578999


Q ss_pred             HHHHHHHhCCCHHHHHHHh
Q 011654          233 MSALCEATGADVTQVSHAI  251 (480)
Q Consensus       233 ~~~l~~~~Gid~~~v~~~~  251 (480)
                      +..++++ |+|++++.+++
T Consensus       509 a~~l~~~-G~~~e~id~~~  526 (725)
T 2wtb_A          509 AMFLVEC-GADPYLIDRAI  526 (725)
T ss_dssp             HHHHHHT-TCCHHHHHHHH
T ss_pred             HHHHHHC-CCCHHHHHHHH
Confidence            9999998 99999999998

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=99.64  E-value=3.7e-15  Score=149.61  Aligned_cols=260  Identities=18%  Similarity=0.201  Sum_probs=163.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +|||+|||+|.||+++|..|+++  |++|++||++ ++++.+++....+..++...      ..++++++++++ +.++|
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~--g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~-~~~~D   72 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALA--GEAINVLARG-ATLQALQTAGLRLTEDGATH------TLPVRATHDAAA-LGEQD   72 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHT--TCCEEEECCH-HHHHHHHHTCEEEEETTEEE------EECCEEESCHHH-HCCCS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHC--CCEEEEEECh-HHHHHHHHCCCEEecCCCeE------EEeeeEECCHHH-cCCCC
Confidence            48999999999999999999998  9999999996 67788875432222121110      113456788876 68999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-Cc-----------------cchHHHHHHHHH
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VP-----------------VKTAEAIEKILT  142 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~-----------------~gt~~~l~~~l~  142 (480)
                      +||+|||++               .+.++++.+.+.++++++|+..+. ++                 .+..+.+.+.+.
T Consensus        73 ~Vilavk~~---------------~~~~~~~~l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~  137 (335)
T 3ghy_A           73 VVIVAVKAP---------------ALESVAAGIAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIP  137 (335)
T ss_dssp             EEEECCCHH---------------HHHHHHGGGSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSC
T ss_pred             EEEEeCCch---------------hHHHHHHHHHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcC
Confidence            999999852               357788889888988888875432 22                 233334544443


Q ss_pred             hcCCCCceeEee-CCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhH
Q 011654          143 HNSREIKYQILS-NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANA  221 (480)
Q Consensus       143 ~~~~g~~~~v~~-~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~  221 (480)
                      ....  -..+++ +-.+..||.+.+..  ...+.+|..+.. +.+..+.+.++|+...- ......|+....|.|++.|+
T Consensus       138 ~~~v--~~gv~~~~a~~~~pg~v~~~~--~g~~~iG~~~~~-~~~~~~~l~~~l~~~g~-~~~~~~di~~~~w~Kl~~na  211 (335)
T 3ghy_A          138 TRHV--LGCVVHLTCATVSPGHIRHGN--GRRLILGEPAGG-ASPRLASIAALFGRAGL-QAECSEAIQRDIWFKLWGNM  211 (335)
T ss_dssp             GGGE--EEEEECCCEEESSTTEEEECS--CCEEEEECTTCS-CCHHHHHHHHHHHHTTC-EEEECSCHHHHHHHHHHTTT
T ss_pred             cccE--EEEEEEEEEEEcCCcEEEECC--CCeEEEecCCCC-cCHHHHHHHHHHHhCCC-CcEeCchHHHHHHHHHHHHh
Confidence            2210  011222 22344566654322  246778864322 34567888899987531 23445699999999977653


Q ss_pred             ---------------------HHHHHHHHHHHHHHHHHHhCCCH----HHHHHHhcCCCCC-CCccccCCCCCccc-chh
Q 011654          222 ---------------------FLAQRISSVNAMSALCEATGADV----TQVSHAIGKDTRI-GPRFLNSSVGFGGS-CFQ  274 (480)
Q Consensus       222 ---------------------~~~~~ia~~nE~~~l~~~~Gid~----~~v~~~~~~~~~~-~~~~~~pg~g~gg~-cl~  274 (480)
                                           .+++....++|+..+++++|+++    +++++.....+.. .+++-+--   -|. -.-
T Consensus       212 ~~N~l~al~~~~~g~~~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~sSM~qD~~---~gr~~tE  288 (335)
T 3ghy_A          212 TMNPVSVLTGATCDRILDDPLVSAFCLAVMAEAKAIGARIGCPIEQSGEARSAVTRQLGAFKTSMLQDAE---AGRGPLE  288 (335)
T ss_dssp             THHHHHHHHCCCHHHHHHSHHHHHHHHHHHHHHHHHHHTTTCCCCSCHHHHHHHHHTTCSCCCTTTC--------CCCCC
T ss_pred             hhhHHHHHhCCChHHHhcChHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHhccCCCCcHHHHHHH---cCCCCch
Confidence                                 56778899999999999999753    4555544432221 12221111   122 222


Q ss_pred             hhH--HHHHHHHHHcCCchhhhHH
Q 011654          275 KDI--LNLVYICECNGLTEVANYW  296 (480)
Q Consensus       275 kD~--~~l~~~a~~~g~~~~~~~~  296 (480)
                      -|.  .++++.|+++|++  .|+.
T Consensus       289 id~i~G~vv~~a~~~gv~--~P~~  310 (335)
T 3ghy_A          289 IDALVASVREIGLHVGVP--TPQI  310 (335)
T ss_dssp             HHHHTHHHHHHHHHHTCC--CHHH
T ss_pred             HHHHhhHHHHHHHHhCCC--CCHH
Confidence            332  3788999999998  4533

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=99.64  E-value=1.3e-15  Score=149.43  Aligned_cols=204  Identities=15%  Similarity=0.105  Sum_probs=134.6

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      ||||+|||+ |.||.++|..|+++  |++|++||+++++++.+.+..                   +..+ +..++++++
T Consensus        11 mm~I~iIG~tG~mG~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~g-------------------~~~~-~~~~~~~~a   68 (286)
T 3c24_A           11 PKTVAILGAGGKMGARITRKIHDS--AHHLAAIEIAPEGRDRLQGMG-------------------IPLT-DGDGWIDEA   68 (286)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHS--SSEEEEECCSHHHHHHHHHTT-------------------CCCC-CSSGGGGTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHhcC-------------------CCcC-CHHHHhcCC
Confidence            479999999 99999999999998  999999999999988876511                   1122 455668899


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      |+||+|||..               .+.++++++.+.++++++|++.|+..+  .+.+.    +...+.. ++..+|.+.
T Consensus        69 DvVi~av~~~---------------~~~~v~~~l~~~l~~~~ivv~~s~~~~--~~~l~----~~~~~~~-~v~~~P~~~  126 (286)
T 3c24_A           69 DVVVLALPDN---------------IIEKVAEDIVPRVRPGTIVLILDAAAP--YAGVM----PERADIT-YFIGHPCHP  126 (286)
T ss_dssp             SEEEECSCHH---------------HHHHHHHHHGGGSCTTCEEEESCSHHH--HHTCS----CCCTTSE-EEEEEECCS
T ss_pred             CEEEEcCCch---------------HHHHHHHHHHHhCCCCCEEEECCCCch--hHHHH----hhhCCCe-EEecCCCCc
Confidence            9999999842               257888899999999999988666432  12222    1111222 233666543


Q ss_pred             cc---cc---cccccCC----CCeEEEEeCCCcchHHHHHHHHHHHhccCCCC---eEEeCChhHHHHh-hhHHhHHHHH
Q 011654          160 AE---GT---AIQDLFN----PDRVLIGGRETPEGQKAIQALKDVYAHWVPED---RIITTNLWSAELS-KLAANAFLAQ  225 (480)
Q Consensus       160 ~~---G~---a~~~~~~----~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~---~v~~~~~~~ae~~-Kl~~N~~~~~  225 (480)
                      .+   +.   ...+...    ...++++...   +++..+.++++|+.++  .   .++..+....... |.+.|.....
T Consensus       127 ~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~---~~~~~~~v~~l~~~~G--~~~~~~~~v~~~~~~~~~~a~~n~~~~~  201 (286)
T 3c24_A          127 PLFNDETDPAARTDYHGGIAKQAIVCALMQG---PEEHYAIGADICETMW--SPVTRTHRVTTEQLAILEPGLSEMVAMP  201 (286)
T ss_dssp             CSSCCCCSHHHHTCSSSSSSCEEEEEEEEES---CTHHHHHHHHHHHHHT--CSEEEEEECCHHHHHHHTTHHHHTTHHH
T ss_pred             cccccccchhhccCcccccccceeeeeccCC---CHHHHHHHHHHHHHhc--CCcceEEEeChhHhHHHHHHHHHHHHHH
Confidence            22   11   1111100    0112222111   4678999999999984  3   3555555444444 9999865555


Q ss_pred             HHH-HHHHHHHHHHHhCCCHHHHHHHhcC
Q 011654          226 RIS-SVNAMSALCEATGADVTQVSHAIGK  253 (480)
Q Consensus       226 ~ia-~~nE~~~l~~~~Gid~~~v~~~~~~  253 (480)
                      .+. +++++...+.+.|+|.+++.+++..
T Consensus       202 ~~~~~~eal~~~~~~~Gl~~~~~~~~~~~  230 (286)
T 3c24_A          202 FVETMVHAVDECADRYGIDRQAALDFMIG  230 (286)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            544 4445777788889999999888763

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=99.63  E-value=6.6e-15  Score=154.02  Aligned_cols=205  Identities=16%  Similarity=0.175  Sum_probs=136.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh--h-----cCCCEEEecCHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ--C-----RGRNLFFSTDIE   73 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~--~-----~~~~l~~t~d~~   73 (480)
                      |+||+|||+|.||.++|..|+++  |++|++||+++++++..++..    +..++.++..  .     .....+++++++
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la~~--G~~V~l~D~~~~~~~~~~~~i----~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~  110 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFARV--GISVVAVESDPKQLDAAKKII----TFTLEKEASRAHQNGQASAKPKLRFSSSTK  110 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHHH----HHHHHHHHHHHHHTTCCCCCCCEEEESCGG
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHH----HHHHHHHHHcCCCCHHHHHHHHhhhcCCHH
Confidence            57999999999999999999998  999999999999887765411    0111222211  0     012245678884


Q ss_pred             HHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCC--CCcee
Q 011654           74 KHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR--EIKYQ  151 (480)
Q Consensus        74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~--g~~~~  151 (480)
                       ++++||+||+|||+.             +.....+++++.++++++++|+. ||..+.++ .+.+.+.....  +..| 
T Consensus       111 -~~~~aDlVIeaVpe~-------------~~~k~~v~~~l~~~~~~~~ii~s-nTs~~~~~-~la~~~~~~~~~ig~hf-  173 (463)
T 1zcj_A          111 -ELSTVDLVVEAVFED-------------MNLKKKVFAELSALCKPGAFLCT-NTSALNVD-DIASSTDRPQLVIGTHF-  173 (463)
T ss_dssp             -GGTTCSEEEECCCSC-------------HHHHHHHHHHHHHHSCTTCEEEE-CCSSSCHH-HHHTTSSCGGGEEEEEE-
T ss_pred             -HHCCCCEEEEcCCCC-------------HHHHHHHHHHHHhhCCCCeEEEe-CCCCcCHH-HHHHHhcCCcceEEeec-
Confidence             589999999999852             23346788889999999998875 77766654 44443321110  1111 


Q ss_pred             EeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHH
Q 011654          152 ILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVN  231 (480)
Q Consensus       152 v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~n  231 (480)
                        ++|....+      +.   .+ +.+..+  ++++++.+.++++.+++ .++++.+.     .+++.|.+.   ..+++
T Consensus       174 --~~P~~~~~------lv---ev-v~g~~t--~~e~~~~~~~l~~~lGk-~~v~v~~~-----~gfi~Nrll---~~~~~  230 (463)
T 1zcj_A          174 --FSPAHVMR------LL---EV-IPSRYS--SPTTIATVMSLSKKIGK-IGVVVGNC-----YGFVGNRML---APYYN  230 (463)
T ss_dssp             --CSSTTTCC------EE---EE-EECSSC--CHHHHHHHHHHHHHTTC-EEEEBCCS-----TTTTHHHHH---HHHHH
T ss_pred             --CCCcccce------eE---EE-eCCCCC--CHHHHHHHHHHHHHhCC-EEEEECCC-----ccHHHHHHH---HHHHH
Confidence              25543321      11   24 444322  68999999999999863 44555542     334555433   44679


Q ss_pred             HHHHHHHHhCCCHHHHHHHhc
Q 011654          232 AMSALCEATGADVTQVSHAIG  252 (480)
Q Consensus       232 E~~~l~~~~Gid~~~v~~~~~  252 (480)
                      |...++++ |++++++.+++.
T Consensus       231 ea~~l~~~-G~~~~~id~~~~  250 (463)
T 1zcj_A          231 QGFFLLEE-GSKPEDVDGVLE  250 (463)
T ss_dssp             HHHHHHHT-TCCHHHHHHHHH
T ss_pred             HHHHHHHc-CCCHHHHHHHHH
Confidence            99999988 899999999986

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=99.63  E-value=1.5e-14  Score=138.74  Aligned_cols=196  Identities=17%  Similarity=0.247  Sum_probs=126.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCC----eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKI----EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~----~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      +|||+|||+|.||.++|..|+++  |+    +|++||+++++.+.+.+.                  -+++.++++.+++
T Consensus         2 ~~~i~iIG~G~mG~~~a~~l~~~--g~~~~~~V~~~~r~~~~~~~~~~~------------------~g~~~~~~~~e~~   61 (247)
T 3gt0_A            2 DKQIGFIGCGNMGMAMIGGMINK--NIVSSNQIICSDLNTANLKNASEK------------------YGLTTTTDNNEVA   61 (247)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT--TSSCGGGEEEECSCHHHHHHHHHH------------------HCCEECSCHHHHH
T ss_pred             CCeEEEECccHHHHHHHHHHHhC--CCCCCCeEEEEeCCHHHHHHHHHH------------------hCCEEeCChHHHH
Confidence            37999999999999999999998  88    999999999999887642                  1356778888888


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEE-ecCCccchHHHHHHHHHhcCCCCceeEe--
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVE-KSTVPVKTAEAIEKILTHNSREIKYQIL--  153 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~~g~~~~v~--  153 (480)
                      +++|+||+|||..               .+.++++++.++++++++|+. .++++.   +.+.+.+....   . .+.  
T Consensus        62 ~~aDvVilav~~~---------------~~~~v~~~l~~~l~~~~~vvs~~~gi~~---~~l~~~~~~~~---~-~v~~~  119 (247)
T 3gt0_A           62 KNADILILSIKPD---------------LYASIINEIKEIIKNDAIIVTIAAGKSI---ESTENAFNKKV---K-VVRVM  119 (247)
T ss_dssp             HHCSEEEECSCTT---------------THHHHC---CCSSCTTCEEEECSCCSCH---HHHHHHHCSCC---E-EEEEE
T ss_pred             HhCCEEEEEeCHH---------------HHHHHHHHHHhhcCCCCEEEEecCCCCH---HHHHHHhCCCC---c-EEEEe
Confidence            9999999999632               146778889888988988773 334442   34555553311   1 122  


Q ss_pred             -eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHH-HhhhHHhHHHHHHHHHHH
Q 011654          154 -SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAE-LSKLAANAFLAQRISSVN  231 (480)
Q Consensus       154 -~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae-~~Kl~~N~~~~~~ia~~n  231 (480)
                       ..|....+|.         ..+..+.  ..+++..+.++++|+.++  ..+.+ +...-. .+.+.. ..-+....++.
T Consensus       120 p~~p~~~~~g~---------~~~~~~~--~~~~~~~~~~~~l~~~~G--~~~~~-~e~~~d~~~a~~g-~gpa~~~~~~e  184 (247)
T 3gt0_A          120 PNTPALVGEGM---------SALCPNE--MVTEKDLEDVLNIFNSFG--QTEIV-SEKLMDVVTSVSG-SSPAYVYMIIE  184 (247)
T ss_dssp             CCGGGGGTCEE---------EEEEECT--TCCHHHHHHHHHHHGGGE--EEEEC-CGGGHHHHHHHHH-HHHHHHHHHHH
T ss_pred             CChHHHHcCce---------EEEEeCC--CCCHHHHHHHHHHHHhCC--CEEEe-CHHHccHHHHHhc-cHHHHHHHHHH
Confidence             2444333332         2333322  225788999999999985  34444 332222 222222 11122233344


Q ss_pred             HHHHHHHHhCCCHHHHHHHhcC
Q 011654          232 AMSALCEATGADVTQVSHAIGK  253 (480)
Q Consensus       232 E~~~l~~~~Gid~~~v~~~~~~  253 (480)
                      .+...+.+.|+|.++..+++..
T Consensus       185 al~~a~~~~Gl~~~~a~~~~~~  206 (247)
T 3gt0_A          185 AMADAAVLDGMPRNQAYKFAAQ  206 (247)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHH
Confidence            4444488999999999998864

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=99.62  E-value=2.1e-14  Score=143.30  Aligned_cols=197  Identities=14%  Similarity=0.122  Sum_probs=132.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCHH--HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPK----IEVAVVDISVS--RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK   74 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~   74 (480)
                      +|||+|||+|.||.+||..|+++  |    ++|++||++++  +++.+++.                   ++++++++.+
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~--G~~~~~~V~v~~r~~~~~~~~~l~~~-------------------G~~~~~~~~e   80 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAA--GVLAAHKIMASSPDMDLATVSALRKM-------------------GVKLTPHNKE   80 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHT--TSSCGGGEEEECSCTTSHHHHHHHHH-------------------TCEEESCHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCCCcceEEEECCCccHHHHHHHHHc-------------------CCEEeCChHH
Confidence            47899999999999999999998  8    89999999986  77776531                   3566778888


Q ss_pred             HhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-CccchHHHHHHHHHhcCCCCceeEe
Q 011654           75 HVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VPVKTAEAIEKILTHNSREIKYQIL  153 (480)
Q Consensus        75 a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~  153 (480)
                      +++++|+||+||| |.              .+.++++++.+.++++++||..++ ++.   +.+.+.+.+..... ..+.
T Consensus        81 ~~~~aDvVilav~-~~--------------~~~~vl~~l~~~l~~~~ivvs~s~gi~~---~~l~~~l~~~~~~~-~vv~  141 (322)
T 2izz_A           81 TVQHSDVLFLAVK-PH--------------IIPFILDEIGADIEDRHIVVSCAAGVTI---SSIEKKLSAFRPAP-RVIR  141 (322)
T ss_dssp             HHHHCSEEEECSC-GG--------------GHHHHHHHHGGGCCTTCEEEECCTTCCH---HHHHHHHHTTSSCC-EEEE
T ss_pred             HhccCCEEEEEeC-HH--------------HHHHHHHHHHhhcCCCCEEEEeCCCCCH---HHHHHHHhhcCCCC-eEEE
Confidence            8899999999998 32              257888899999988998887654 342   34666665431111 1222


Q ss_pred             eCC---ccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhH--HhHHHHHHHH
Q 011654          154 SNP---EFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLA--ANAFLAQRIS  228 (480)
Q Consensus       154 ~~P---e~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~--~N~~~~~~ia  228 (480)
                      ..|   .....|         ..++.++..  .+++..+.++++|+.++  ..++...-....+..+.  .|.|..   .
T Consensus       142 ~~p~~p~~~~~g---------~~v~~~g~~--~~~~~~~~v~~ll~~~G--~~~~~~e~~~~~~~a~~g~gpa~~~---~  205 (322)
T 2izz_A          142 CMTNTPVVVREG---------ATVYATGTH--AQVEDGRLMEQLLSSVG--FCTEVEEDLIDAVTGLSGSGPAYAF---T  205 (322)
T ss_dssp             EECCGGGGGTCE---------EEEEEECTT--CCHHHHHHHHHHHHTTE--EEEECCGGGHHHHHHHTTTHHHHHH---H
T ss_pred             EeCCcHHHHcCC---------eEEEEeCCC--CCHHHHHHHHHHHHhCC--CEEEeCHHHHHHHHHHhcCHHHHHH---H
Confidence            233   222222         135556542  24678899999999984  35554422223333433  244443   3


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHhcC
Q 011654          229 SVNAMSALCEATGADVTQVSHAIGK  253 (480)
Q Consensus       229 ~~nE~~~l~~~~Gid~~~v~~~~~~  253 (480)
                      +++.++..+.+.|+|.+.+.+++..
T Consensus       206 ~~eala~a~~~~Gl~~~~a~~l~~~  230 (322)
T 2izz_A          206 ALDALADGGVKMGLPRRLAVRLGAQ  230 (322)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            4555555678999999988887754

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=99.61  E-value=3.3e-14  Score=140.80  Aligned_cols=206  Identities=13%  Similarity=0.121  Sum_probs=142.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC------------CCCCCCCCChHHHHHhhcCCCEEEe
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG------------DQLPIYEPGLEDVVTQCRGRNLFFS   69 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~------------~~~~~~e~~l~~l~~~~~~~~l~~t   69 (480)
                      .||+|||+|.||..+|..++.+  |++|+++|++++.++...+            +... .....++.+     .+++.+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~-~~~~~~~~l-----~~i~~~   78 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASG--GFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLK-GSLSAEEQL-----SLISSC   78 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCC-SSSCHHHHH-----HTEEEE
T ss_pred             CeEEEECCcHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCC-CccCHHHHH-----hhcccc
Confidence            5899999999999999999998  9999999999986554321            1111 011222222     368899


Q ss_pred             cCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEE-ecCCccchHHHHHHHHHhcCCCC
Q 011654           70 TDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVE-KSTVPVKTAEAIEKILTHNSREI  148 (480)
Q Consensus        70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~-~STv~~gt~~~l~~~l~~~~~g~  148 (480)
                      +|+++++++||+|+.|||..           .++  -++++++|.+++++++|+.. +|++++..   ++..+..-   .
T Consensus        79 ~~l~~a~~~ad~ViEav~E~-----------l~i--K~~lf~~l~~~~~~~aIlaSNTSsl~is~---ia~~~~~p---~  139 (319)
T 3ado_A           79 TNLAEAVEGVVHIQECVPEN-----------LDL--KRKIFAQLDSIVDDRVVLSSSSSCLLPSK---LFTGLAHV---K  139 (319)
T ss_dssp             CCHHHHTTTEEEEEECCCSC-----------HHH--HHHHHHHHHTTCCSSSEEEECCSSCCHHH---HHTTCTTG---G
T ss_pred             cchHhHhccCcEEeeccccH-----------HHH--HHHHHHHHHHHhhhcceeehhhhhccchh---hhhhccCC---C
Confidence            99999999999999999863           333  48899999999999998743 34555432   22111110   1


Q ss_pred             ceeE--eeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEe-CChhHHHHhhhHHhHHHHH
Q 011654          149 KYQI--LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIIT-TNLWSAELSKLAANAFLAQ  225 (480)
Q Consensus       149 ~~~v--~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~-~~~~~ae~~Kl~~N~~~~~  225 (480)
                      .|..  .++|....+-      .   -| +.+..|  ++++++.+..++..+++ .++.+ .+     ...++.|   .+
T Consensus       140 r~ig~HffNP~~~m~L------V---Ei-v~g~~T--s~~~~~~~~~~~~~~gk-~pv~v~kd-----~pGFi~N---Rl  198 (319)
T 3ado_A          140 QCIVAHPVNPPYYIPL------V---EL-VPHPET--SPATVDRTHALMRKIGQ-SPVRVLKE-----IDGFVLN---RL  198 (319)
T ss_dssp             GEEEEEECSSTTTCCE------E---EE-EECTTC--CHHHHHHHHHHHHHTTC-EEEECSSC-----CTTTTHH---HH
T ss_pred             cEEEecCCCCccccch------H---Hh-cCCCCC--cHHHHHHHHHHHHHhCC-ccCCcCCC-----CCCEeHH---HH
Confidence            1111  1344433321      0   24 455433  79999999999999863 44544 33     3457778   56


Q ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHhcCCC
Q 011654          226 RISSVNAMSALCEATGADVTQVSHAIGKDT  255 (480)
Q Consensus       226 ~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~  255 (480)
                      ..++++|...+.+..+++++++..++....
T Consensus       199 ~~~~~~EA~~lv~eGvas~edID~~~~~g~  228 (319)
T 3ado_A          199 QYAIISEAWRLVEEGIVSPSDLDLVMSDGL  228 (319)
T ss_dssp             HHHHHHHHHHHHHTTSSCHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence            699999999999999999999999987653

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=99.59  E-value=3.6e-14  Score=140.07  Aligned_cols=223  Identities=14%  Similarity=0.114  Sum_probs=144.9

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +||+||| +|.||.++|..|++.  |++|++||++++                                ++..+++++||
T Consensus        22 ~~I~iIGg~G~mG~~la~~l~~~--G~~V~~~~~~~~--------------------------------~~~~~~~~~aD   67 (298)
T 2pv7_A           22 HKIVIVGGYGKLGGLFARYLRAS--GYPISILDREDW--------------------------------AVAESILANAD   67 (298)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTT--TCCEEEECTTCG--------------------------------GGHHHHHTTCS
T ss_pred             CEEEEEcCCCHHHHHHHHHHHhC--CCeEEEEECCcc--------------------------------cCHHHHhcCCC
Confidence            5899999 999999999999988  999999998753                                13445688999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      +||+|||.+               .+.++++++.++++++++|++.+++.....+.+.+.+   .  .. ++..+|.+..
T Consensus        68 vVilavp~~---------------~~~~vl~~l~~~l~~~~iv~~~~svk~~~~~~~~~~~---~--~~-~v~~hP~~g~  126 (298)
T 2pv7_A           68 VVIVSVPIN---------------LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVH---T--GA-VLGLHPMFGA  126 (298)
T ss_dssp             EEEECSCGG---------------GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHC---S--SE-EEEEEECSCT
T ss_pred             EEEEeCCHH---------------HHHHHHHHHHhhcCCCcEEEECCCCCcHHHHHHHHhc---C--CC-EEeeCCCCCC
Confidence            999999853               1577888999999999999988887766555443332   1  12 3444564332


Q ss_pred             ccccccccCCCC-eEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCCh-hHHHHhhhHHhHHHHHHHHHHHHHHHHHH
Q 011654          161 EGTAIQDLFNPD-RVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNL-WSAELSKLAANAFLAQRISSVNAMSALCE  238 (480)
Q Consensus       161 ~G~a~~~~~~~~-~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~-~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~  238 (480)
                      +.    ..+... .++..+.    +++..+.++++|+.++  ..++.++. ...++++++.+....+.+++++.+..   
T Consensus       127 ~~----~~~~g~~~~l~~~~----~~~~~~~v~~l~~~~G--~~~~~~~~~~~d~~~a~~~~~p~~~a~~l~~~l~~---  193 (298)
T 2pv7_A          127 DI----ASMAKQVVVRCDGR----FPERYEWLLEQIQIWG--AKIYQTNATEHDHNMTYIQALRHFSTFANGLHLSK---  193 (298)
T ss_dssp             TC----SCCTTCEEEEEEEE----CGGGTHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTT---
T ss_pred             Cc----hhhcCCeEEEecCC----CHHHHHHHHHHHHHcC--CEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHh---
Confidence            22    122222 2333332    3567889999999984  46666554 45889999999877777777776542   


Q ss_pred             HhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHH-HHHHHHHcCCchhhhHHHHHHHHHHHhHHHHHHHHHHH
Q 011654          239 ATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILN-LVYICECNGLTEVANYWKQVIKVNDYQKNRFVNRIVSS  317 (480)
Q Consensus       239 ~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~-l~~~a~~~g~~~~~~~~~~~~~~N~~~~~~~~~~~~~~  317 (480)
                       .|.+.++..+.+.             .||      +|... +..++   +.+  +.+|......|..... .++.+.+.
T Consensus       194 -~g~~~~~~~~la~-------------~~f------~~~~~~~~ria---~~~--p~~~~di~~sn~~~~~-~l~~~~~~  247 (298)
T 2pv7_A          194 -QPINLANLLALSS-------------PIY------RLELAMIGRLF---AQD--AELYADIIMDKSENLA-VIETLKQT  247 (298)
T ss_dssp             -SSCCHHHHHHTCC-------------HHH------HHHHHHHHHHH---TSC--HHHHHHHHC----CHH-HHHHHHHH
T ss_pred             -cCCCHHHHHhhcC-------------HHH------HHHHHHHHHHh---cCC--HHHHHHHHHHCHHHHH-HHHHHHHH
Confidence             7777766555332             112      33222 23333   333  5677777777777766 66665554


Q ss_pred             h
Q 011654          318 M  318 (480)
Q Consensus       318 l  318 (480)
                      |
T Consensus       248 l  248 (298)
T 2pv7_A          248 Y  248 (298)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=99.59  E-value=1.6e-14  Score=143.95  Aligned_cols=247  Identities=17%  Similarity=0.155  Sum_probs=154.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +|||+|||+|.||+.+|..|+++  |++|++| +++++++.+++.+..+..++...      ..++.+++++++ +.++|
T Consensus        19 ~~kI~IiGaGa~G~~~a~~L~~~--G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~------~~~~~~~~~~~~-~~~~D   88 (318)
T 3hwr_A           19 GMKVAIMGAGAVGCYYGGMLARA--GHEVILI-ARPQHVQAIEATGLRLETQSFDE------QVKVSASSDPSA-VQGAD   88 (318)
T ss_dssp             -CEEEEESCSHHHHHHHHHHHHT--TCEEEEE-CCHHHHHHHHHHCEEEECSSCEE------EECCEEESCGGG-GTTCS
T ss_pred             CCcEEEECcCHHHHHHHHHHHHC--CCeEEEE-EcHhHHHHHHhCCeEEEcCCCcE------EEeeeeeCCHHH-cCCCC
Confidence            48999999999999999999998  9999999 99999999986432222222110      123567788765 68999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHH-hcCCCCceeEeeCCccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILT-HNSREIKYQILSNPEFL  159 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~-~~~~g~~~~v~~~Pe~~  159 (480)
                      +||+|||+.               .++++++.+.++++++++|+.. +...+..+.+.+.+. +...+.   +..+-.+.
T Consensus        89 ~vilavk~~---------------~~~~~l~~l~~~l~~~~~iv~~-~nGi~~~~~l~~~~~~~vl~g~---~~~~a~~~  149 (318)
T 3hwr_A           89 LVLFCVKST---------------DTQSAALAMKPALAKSALVLSL-QNGVENADTLRSLLEQEVAAAV---VYVATEMA  149 (318)
T ss_dssp             EEEECCCGG---------------GHHHHHHHHTTTSCTTCEEEEE-CSSSSHHHHHHHHCCSEEEEEE---EEEEEEEE
T ss_pred             EEEEEcccc---------------cHHHHHHHHHHhcCCCCEEEEe-CCCCCcHHHHHHHcCCcEEEEE---EEEeEEEc
Confidence            999999853               2578899999999988877654 334444455666553 211010   00111122


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhH------------------
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANA------------------  221 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------  221 (480)
                      +|+.+.+...  .++.+|..      +..+.+.++|+... .......|+...+|.|++-|+                  
T Consensus       150 gP~~~~~~~~--g~~~ig~~------~~~~~l~~~l~~~~-~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~  220 (318)
T 3hwr_A          150 GPGHVRHHGR--GELVIEPT------SHGANLAAIFAAAG-VPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVR  220 (318)
T ss_dssp             ETTEEEEEEE--EEEEECCC------TTTHHHHHHHHHTT-CCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTT
T ss_pred             CCeEEEEcCC--ceEEEcCC------HHHHHHHHHHHhCC-CCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhc
Confidence            3333322111  13456752      23467888888753 123455799999999999886                  


Q ss_pred             ---HHHHHHHHHHHHHHHHHHhCCCH-----HHHHHHhcCCCCC-CCccc--cCCCCCcccchhhh--HHHHHHHHHHcC
Q 011654          222 ---FLAQRISSVNAMSALCEATGADV-----TQVSHAIGKDTRI-GPRFL--NSSVGFGGSCFQKD--ILNLVYICECNG  288 (480)
Q Consensus       222 ---~~~~~ia~~nE~~~l~~~~Gid~-----~~v~~~~~~~~~~-~~~~~--~pg~g~gg~cl~kD--~~~l~~~a~~~g  288 (480)
                         .+.+....+.|+..++++.|+++     +.+++.+...+.. ++++-  .-|     .-.--|  ..++++.++++|
T Consensus       221 ~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~~sSM~qD~~~g-----r~tEid~i~G~vv~~a~~~g  295 (318)
T 3hwr_A          221 GEGVEAVMRDVMEECFAVARAEGVKLPDDVALAIRRIAETMPRQSSSTAQDLARG-----KRSEIDHLNGLIVRRGDALG  295 (318)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHSTTCCCHHHHHHHTT-----CCCSGGGTHHHHHHHHHHTT
T ss_pred             ChhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCCcHHHHHHHcC-----ChhHHHHHHHHHHHHHHHhC
Confidence               24566789999999999999763     3344433322111 11110  111     111112  237888999999


Q ss_pred             Cc
Q 011654          289 LT  290 (480)
Q Consensus       289 ~~  290 (480)
                      ++
T Consensus       296 v~  297 (318)
T 3hwr_A          296 IP  297 (318)
T ss_dssp             CC
T ss_pred             CC
Confidence            98

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=99.58  E-value=2e-13  Score=135.61  Aligned_cols=255  Identities=15%  Similarity=0.092  Sum_probs=156.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||+.+|..|+++  |++|++|++++  .+.+++....+..+.-     ...-..+.+++++++ +..+|+
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~~--~~~i~~~g~~~~~~~g-----~~~~~~~~~~~~~~~-~~~~D~   72 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRS--GEDVHFLLRRD--YEAIAGNGLKVFSING-----DFTLPHVKGYRAPEE-IGPMDL   72 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHT--SCCEEEECSTT--HHHHHHTCEEEEETTC-----CEEESCCCEESCHHH-HCCCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCeEEEEEcCc--HHHHHhCCCEEEcCCC-----eEEEeeceeecCHHH-cCCCCE
Confidence            7999999999999999999998  99999999986  3777653322110000     000002345677765 789999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAE  161 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~  161 (480)
                      ||+|||...               +.++++.+.+++.++++|+.. +...+..+.+.+.+.+... ....+..+-.+.+|
T Consensus        73 vilavk~~~---------------~~~~l~~l~~~l~~~~~iv~l-~nGi~~~~~l~~~~~~~~v-~~~~~~~~a~~~~p  135 (312)
T 3hn2_A           73 VLVGLKTFA---------------NSRYEELIRPLVEEGTQILTL-QNGLGNEEALATLFGAERI-IGGVAFLCSNRGEP  135 (312)
T ss_dssp             EEECCCGGG---------------GGGHHHHHGGGCCTTCEEEEC-CSSSSHHHHHHHHTCGGGE-EEEEEEEECCBCSS
T ss_pred             EEEecCCCC---------------cHHHHHHHHhhcCCCCEEEEe-cCCCCcHHHHHHHCCCCcE-EEEEEEeeeEEcCC
Confidence            999998532               356788999999988877643 2334444556665543210 00011122234455


Q ss_pred             cccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhH--------------------
Q 011654          162 GTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANA--------------------  221 (480)
Q Consensus       162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~--------------------  221 (480)
                      |...+.  .+..+.+|..+.. +.+..+.+.++|+...- ......|+...+|.|++-|+                    
T Consensus       136 ~~v~~~--~~g~~~ig~~~~~-~~~~~~~l~~~l~~~g~-~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~  211 (312)
T 3hn2_A          136 GEVHHL--GAGRIILGEFLPR-DTGRIEELAAMFRQAGV-DCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARD  211 (312)
T ss_dssp             SEEEEC--EEEEEEEEESSCC-CSHHHHHHHHHHHHTTC-CEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSH
T ss_pred             cEEEEC--CCCeEEEecCCCC-ccHHHHHHHHHHHhCCC-CcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhCh
Confidence            555332  1335778865322 24567788899987531 23445799999999999886                    


Q ss_pred             -HHHHHHHHHHHHHHHHHHhC--CC-----HHHHHHHhcCCCCCCCccc-cCCCCCcccchhhhH--HHHHHHHHHcCCc
Q 011654          222 -FLAQRISSVNAMSALCEATG--AD-----VTQVSHAIGKDTRIGPRFL-NSSVGFGGSCFQKDI--LNLVYICECNGLT  290 (480)
Q Consensus       222 -~~~~~ia~~nE~~~l~~~~G--id-----~~~v~~~~~~~~~~~~~~~-~pg~g~gg~cl~kD~--~~l~~~a~~~g~~  290 (480)
                       .+.+....+.|+..+++++|  ++     .+.+++.....++..+.++ +-   --|.-.--|.  .++++.|+++|++
T Consensus       212 ~~~~l~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~~~~sSM~qD~---~~gr~tEid~i~G~vv~~a~~~gv~  288 (312)
T 3hn2_A          212 VSRKLVRGIMLEVIAGANAQGLATFIADGYVDDMLEFTDAMGEYKPSMEIDR---EEGRPLEIAAIFRTPLAYGAREGIA  288 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCSSCCCTTHHHHHHHHHTTSCSCCCHHHHHH---HTTCCCCHHHHTHHHHHHHHHTTCC
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCccCCCHHHHHHHHHHHhcCCCCCchHHHHH---HhCCCccHHHHhhHHHHHHHHhCCC
Confidence             35556778999999999999  65     3445555443322111111 00   0011112222  3678889999998

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=99.57  E-value=8.9e-14  Score=139.35  Aligned_cols=185  Identities=12%  Similarity=0.104  Sum_probs=125.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc---
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA---   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~---   77 (480)
                      ++||+|||+|.||.+||..|.++  |++|++||+++++.+.+.+.                   ++..+++++++++   
T Consensus         8 ~~kIgIIG~G~mG~slA~~L~~~--G~~V~~~dr~~~~~~~a~~~-------------------G~~~~~~~~e~~~~a~   66 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDLHAA--NHSVFGYNRSRSGAKSAVDE-------------------GFDVSADLEATLQRAA   66 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHHHHT--TCCEEEECSCHHHHHHHHHT-------------------TCCEESCHHHHHHHHH
T ss_pred             CCEEEEEeecHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCeeeCCHHHHHHhcc
Confidence            37899999999999999999998  99999999999988876642                   2345677777665   


Q ss_pred             -cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCC
Q 011654           78 -EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNP  156 (480)
Q Consensus        78 -~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P  156 (480)
                       ++|+||+|||.               ..+.++++++.+. +++++|++.+++.+...+.+.+.+..    .. ++..+|
T Consensus        67 ~~aDlVilavP~---------------~~~~~vl~~l~~~-~~~~iv~Dv~Svk~~i~~~~~~~~~~----~~-~v~~HP  125 (341)
T 3ktd_A           67 AEDALIVLAVPM---------------TAIDSLLDAVHTH-APNNGFTDVVSVKTAVYDAVKARNMQ----HR-YVGSHP  125 (341)
T ss_dssp             HTTCEEEECSCH---------------HHHHHHHHHHHHH-CTTCCEEECCSCSHHHHHHHHHTTCG----GG-EECEEE
T ss_pred             cCCCEEEEeCCH---------------HHHHHHHHHHHcc-CCCCEEEEcCCCChHHHHHHHHhCCC----Cc-EecCCc
Confidence             47999999983               2357778888886 78899998888877666655543321    11 344455


Q ss_pred             cc----ccccccccccCCCCeEEEEeCCCcchHH--------HHHHHHHHHhccCCCCeEEeCCh-hHHHHhhhHHhHHH
Q 011654          157 EF----LAEGTAIQDLFNPDRVLIGGRETPEGQK--------AIQALKDVYAHWVPEDRIITTNL-WSAELSKLAANAFL  223 (480)
Q Consensus       157 e~----~~~G~a~~~~~~~~~vviG~~~~~~~~~--------~~~~~~~l~~~~~~~~~v~~~~~-~~ae~~Kl~~N~~~  223 (480)
                      ..    .++..+..+++....+++- +....+++        .++.++++|+.++  ..++.+++ ..-..+.++...-.
T Consensus       126 maG~e~sG~~aa~~~Lf~g~~~ilt-p~~~~~~e~~~~~~~~~~~~v~~l~~~~G--a~v~~~~~~~HD~~~A~vshlPh  202 (341)
T 3ktd_A          126 MAGTANSGWSASMDGLFKRAVWVVT-FDQLFDGTDINSTWISIWKDVVQMALAVG--AEVVPSRVGPHDAAAARVSHLTH  202 (341)
T ss_dssp             CCSCC-CCGGGCCSSTTTTCEEEEC-CGGGTSSCCCCHHHHHHHHHHHHHHHHTT--CEEEECCHHHHHHHHHHHTHHHH
T ss_pred             cccccccchhhhhhHHhcCCeEEEE-eCCCCChhhhccchHHHHHHHHHHHHHcC--CEEEEeCHHHHHHHHHHHhHHHH
Confidence            44    3444445566655434432 21122345        7889999999985  35666654 45567777776555


Q ss_pred             HHHHHHH
Q 011654          224 AQRISSV  230 (480)
Q Consensus       224 ~~~ia~~  230 (480)
                      .+..+++
T Consensus       203 ~ia~aL~  209 (341)
T 3ktd_A          203 ILAETLA  209 (341)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444443

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=99.56  E-value=1.5e-13  Score=136.89  Aligned_cols=253  Identities=16%  Similarity=0.142  Sum_probs=155.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCC---CCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIY---EPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~---e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      |||+|||+|.||+.+|..|+++  |++|++|++++  .+.+++....+.   ..+..     .  ..+.++++++++.+.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~--g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~-----~--~~~~~~~~~~~~~~~   71 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKT--GHCVSVVSRSD--YETVKAKGIRIRSATLGDYT-----F--RPAAVVRSAAELETK   71 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHT--TCEEEEECSTT--HHHHHHHCEEEEETTTCCEE-----E--CCSCEESCGGGCSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCeEEEEeCCh--HHHHHhCCcEEeecCCCcEE-----E--eeeeeECCHHHcCCC
Confidence            7999999999999999999998  99999999986  366664321111   00000     0  023456787775558


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      +|+||+|||+..               +.++++.+.++++++++|+... ...+..+.+.+.+...      .++++|.+
T Consensus        72 ~DlVilavK~~~---------------~~~~l~~l~~~l~~~t~Iv~~~-nGi~~~~~l~~~~~~~------~vl~g~~~  129 (320)
T 3i83_A           72 PDCTLLCIKVVE---------------GADRVGLLRDAVAPDTGIVLIS-NGIDIEPEVAAAFPDN------EVISGLAF  129 (320)
T ss_dssp             CSEEEECCCCCT---------------TCCHHHHHTTSCCTTCEEEEEC-SSSSCSHHHHHHSTTS------CEEEEEEE
T ss_pred             CCEEEEecCCCC---------------hHHHHHHHHhhcCCCCEEEEeC-CCCChHHHHHHHCCCC------cEEEEEEE
Confidence            999999998643               2356788999998888776432 2333335555554432      23334432


Q ss_pred             -----ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHH-----------
Q 011654          159 -----LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAF-----------  222 (480)
Q Consensus       159 -----~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~-----------  222 (480)
                           ..||...+.  .+..+.+|..+.. +.+..+.+.++|+... ....+..|+...+|.|++.|+-           
T Consensus       130 ~~a~~~~pg~v~~~--~~~~~~ig~~~~~-~~~~~~~l~~~l~~~~-~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~  205 (320)
T 3i83_A          130 IGVTRTAPGEIWHQ--AYGRLMLGNYPGG-VSERVKTLAAAFEEAG-IDGIATENITTARWQKCVWNAAFNPLSVLSGGL  205 (320)
T ss_dssp             EEEEEEETTEEEEE--EEEEEEEEESSSC-CCHHHHHHHHHHHHTT-SCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             eceEEcCCCEEEEC--CCCEEEEecCCCC-ccHHHHHHHHHHHhCC-CCceECHHHHHHHHHHHHHHHhhhHHHHHHCCC
Confidence                 334443322  2346778864222 2456788889998753 1234557999999999998851           


Q ss_pred             ---------HHHHHHHHHHHHHHHHHhCCCH-----HHHHHHhcCCCCCCCccc-cCCCCCcccchhhhH--HHHHHHHH
Q 011654          223 ---------LAQRISSVNAMSALCEATGADV-----TQVSHAIGKDTRIGPRFL-NSSVGFGGSCFQKDI--LNLVYICE  285 (480)
Q Consensus       223 ---------~~~~ia~~nE~~~l~~~~Gid~-----~~v~~~~~~~~~~~~~~~-~pg~g~gg~cl~kD~--~~l~~~a~  285 (480)
                               +.+....+.|+..++++.|++.     +.+++.....++..+.++ +-   --|.-.--|.  .++++.++
T Consensus       206 ~g~~~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~~sSM~qD~---~~gr~tEid~i~G~vv~~a~  282 (320)
T 3i83_A          206 DTLDILSTQEGFVRAIMQEIRAVAAANGHPLPEDIVEKNVASTYKMPPYKTSMLVDF---EAGQPMETEVILGNAVRAGR  282 (320)
T ss_dssp             CHHHHHHHCHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHSCCCCCHHHHHH---HHTCCCCHHHHTHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCCCCcHHHHH---HhCCCchHHHHccHHHHHHH
Confidence                     4456779999999999999863     344444332221111111 00   0011111222  37788999


Q ss_pred             HcCCchhhhHH
Q 011654          286 CNGLTEVANYW  296 (480)
Q Consensus       286 ~~g~~~~~~~~  296 (480)
                      ++|++  .|+.
T Consensus       283 ~~gv~--~P~~  291 (320)
T 3i83_A          283 RTRVA--IPHL  291 (320)
T ss_dssp             HTTCC--CHHH
T ss_pred             HhCCC--CCHH
Confidence            99998  4543

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=99.54  E-value=9.8e-14  Score=133.88  Aligned_cols=194  Identities=10%  Similarity=0.154  Sum_probs=126.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ||||+|||+|.||..+|..|++.  |++|.+||+++++.+.+.+..                  ++..+++++++++++|
T Consensus         3 ~m~i~iiG~G~mG~~~a~~l~~~--g~~v~~~~~~~~~~~~~~~~~------------------g~~~~~~~~~~~~~~D   62 (259)
T 2ahr_A            3 AMKIGIIGVGKMASAIIKGLKQT--PHELIISGSSLERSKEIAEQL------------------ALPYAMSHQDLIDQVD   62 (259)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTTS--SCEEEEECSSHHHHHHHHHHH------------------TCCBCSSHHHHHHTCS
T ss_pred             ccEEEEECCCHHHHHHHHHHHhC--CCeEEEECCCHHHHHHHHHHc------------------CCEeeCCHHHHHhcCC
Confidence            68999999999999999999987  899999999999988876420                  1334577888888999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe-cCCccchHHHHHHHHHhcCCCCcee--EeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK-STVPVKTAEAIEKILTHNSREIKYQ--ILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~--v~~~Pe  157 (480)
                      +||+|+| +.              .+.++++.    ++++++|+.. +++++.   .+.+.+...   ..+.  +...|.
T Consensus        63 ~Vi~~v~-~~--------------~~~~v~~~----l~~~~~vv~~~~~~~~~---~l~~~~~~~---~~~v~~~p~~~~  117 (259)
T 2ahr_A           63 LVILGIK-PQ--------------LFETVLKP----LHFKQPIISMAAGISLQ---RLATFVGQD---LPLLRIMPNMNA  117 (259)
T ss_dssp             EEEECSC-GG--------------GHHHHHTT----SCCCSCEEECCTTCCHH---HHHHHHCTT---SCEEEEECCGGG
T ss_pred             EEEEEeC-cH--------------hHHHHHHH----hccCCEEEEeCCCCCHH---HHHHhcCCC---CCEEEEcCCchH
Confidence            9999998 32              12334333    4477877766 356554   344444421   1221  111222


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      ....|.        ..++.|+.   .+++..+.++++|+.++  ..++........++|+..+.. +....+++.++..+
T Consensus       118 ~~~~g~--------~~i~~~~~---~~~~~~~~~~~ll~~~G--~~~~~~~~~~d~~~al~g~~~-~~~~~~~~~la~~~  183 (259)
T 2ahr_A          118 QILQSS--------TALTGNAL---VSQELQARVRDLTDSFG--STFDISEKDFDTFTALAGSSP-AYIYLFIEALAKAG  183 (259)
T ss_dssp             GGTCEE--------EEEEECTT---CCHHHHHHHHHHHHTTE--EEEECCGGGHHHHHHHHTTHH-HHHHHHHHHHHHHH
T ss_pred             HHcCce--------EEEEcCCC---CCHHHHHHHHHHHHhCC--CEEEecHHHccHHHHHhccHH-HHHHHHHHHHHHHH
Confidence            222221        12333321   24788999999999984  344455556677777753221 12345566666679


Q ss_pred             HHhCCCHHHHHHHhcC
Q 011654          238 EATGADVTQVSHAIGK  253 (480)
Q Consensus       238 ~~~Gid~~~v~~~~~~  253 (480)
                      .+.|+|.+++.+++..
T Consensus       184 ~~~Gl~~~~~~~~~~~  199 (259)
T 2ahr_A          184 VKNGIPKAKALEIVTQ  199 (259)
T ss_dssp             HHTTCCHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHH
Confidence            9999999999988764

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=99.54  E-value=6.4e-13  Score=129.92  Aligned_cols=193  Identities=14%  Similarity=0.187  Sum_probs=127.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC---eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI---EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~---~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      |||+|||+|.||.++|..|+++  |+   +|++||+++++.+.+.+.                  -+++.+++..+++++
T Consensus         4 ~~I~iIG~G~mG~aia~~l~~~--g~~~~~V~v~dr~~~~~~~l~~~------------------~gi~~~~~~~~~~~~   63 (280)
T 3tri_A            4 SNITFIGGGNMARNIVVGLIAN--GYDPNRICVTNRSLDKLDFFKEK------------------CGVHTTQDNRQGALN   63 (280)
T ss_dssp             SCEEEESCSHHHHHHHHHHHHT--TCCGGGEEEECSSSHHHHHHHHT------------------TCCEEESCHHHHHSS
T ss_pred             CEEEEEcccHHHHHHHHHHHHC--CCCCCeEEEEeCCHHHHHHHHHH------------------cCCEEeCChHHHHhc
Confidence            7899999999999999999998  88   999999999999888753                  135677888888999


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhh-CCCCCEEEEe-cCCccchHHHHHHHHHhcCCCCceeEeeCC
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV-SNSNKIVVEK-STVPVKTAEAIEKILTHNSREIKYQILSNP  156 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~v~~~P  156 (480)
                      +|+||+|||. .              .+.++++++.++ ++++++|+.. ++++   .+.+.+.+....   .+ +-..|
T Consensus        64 aDvVilav~p-~--------------~~~~vl~~l~~~~l~~~~iiiS~~agi~---~~~l~~~l~~~~---~v-vr~mP  121 (280)
T 3tri_A           64 ADVVVLAVKP-H--------------QIKMVCEELKDILSETKILVISLAVGVT---TPLIEKWLGKAS---RI-VRAMP  121 (280)
T ss_dssp             CSEEEECSCG-G--------------GHHHHHHHHHHHHHTTTCEEEECCTTCC---HHHHHHHHTCCS---SE-EEEEC
T ss_pred             CCeEEEEeCH-H--------------HHHHHHHHHHhhccCCCeEEEEecCCCC---HHHHHHHcCCCC---eE-EEEec
Confidence            9999999973 1              257888899888 8888777632 2233   345665554321   11 22233


Q ss_pred             c---cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChh-HHHHhhh--HHhHHHHHHHHHH
Q 011654          157 E---FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLW-SAELSKL--AANAFLAQRISSV  230 (480)
Q Consensus       157 e---~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~-~ae~~Kl--~~N~~~~~~ia~~  230 (480)
                      .   ..+.|.         ..+..+.  ..+++..+.++++|+.++  ..+++.+.. -...+-+  ..+.|....+..+
T Consensus       122 n~p~~v~~g~---------~~l~~~~--~~~~~~~~~v~~l~~~iG--~~~~v~~E~~~d~~talsgsgpa~~~~~~eal  188 (280)
T 3tri_A          122 NTPSSVRAGA---------TGLFANE--TVDKDQKNLAESIMRAVG--LVIWVSSEDQIEKIAALSGSGPAYIFLIMEAL  188 (280)
T ss_dssp             CGGGGGTCEE---------EEEECCT--TSCHHHHHHHHHHHGGGE--EEEECSSHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             CChHHhcCcc---------EEEEeCC--CCCHHHHHHHHHHHHHCC--CeEEECCHHHhhHHHHHhccHHHHHHHHHHHH
Confidence            2   222221         2233332  236789999999999985  345453321 1112222  2244554444444


Q ss_pred             HHHHHHHHHhCCCHHHHHHHhc
Q 011654          231 NAMSALCEATGADVTQVSHAIG  252 (480)
Q Consensus       231 nE~~~l~~~~Gid~~~v~~~~~  252 (480)
                      .   .-+.+.|++.++..+++.
T Consensus       189 ~---~a~v~~Gl~~~~a~~l~~  207 (280)
T 3tri_A          189 Q---EAAEQLGLTKETAELLTE  207 (280)
T ss_dssp             H---HHHHHTTCCHHHHHHHHH
T ss_pred             H---HHHHHcCCCHHHHHHHHH
Confidence            3   446789999998888765

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=99.54  E-value=1.2e-13  Score=129.01  Aligned_cols=186  Identities=15%  Similarity=0.089  Sum_probs=126.5

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+||| +|.||..+|..|+++  |++|+++|+++++.+.+.+..        ...+   ....+.. +++.++++++|
T Consensus         1 m~i~iiGa~G~~G~~ia~~l~~~--g~~V~~~~r~~~~~~~~~~~~--------~~~~---~~~~~~~-~~~~~~~~~~D   66 (212)
T 1jay_A            1 MRVALLGGTGNLGKGLALRLATL--GHEIVVGSRREEKAEAKAAEY--------RRIA---GDASITG-MKNEDAAEACD   66 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT--TCEEEEEESSHHHHHHHHHHH--------HHHH---SSCCEEE-EEHHHHHHHCS
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHh--------cccc---ccCCCCh-hhHHHHHhcCC
Confidence            7999999 999999999999988  899999999999888776420        0000   0123553 56777789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-Ccc-----------chHHHHHHHHHhcCCCC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VPV-----------KTAEAIEKILTHNSREI  148 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~-----------gt~~~l~~~l~~~~~g~  148 (480)
                      +||+|+|.+               .+.++++++.+.++ +++|++.++ +++           ...+.+++.+..    .
T Consensus        67 ~Vi~~~~~~---------------~~~~~~~~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~  126 (212)
T 1jay_A           67 IAVLTIPWE---------------HAIDTARDLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----E  126 (212)
T ss_dssp             EEEECSCHH---------------HHHHHHHHTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----S
T ss_pred             EEEEeCChh---------------hHHHHHHHHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----C
Confidence            999998742               24566777776664 888888776 442           225667666642    1


Q ss_pred             ceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhcc-CCCCeEEeCChhHHHHhhhHHhHHHHHHH
Q 011654          149 KYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHW-VPEDRIITTNLWSAELSKLAANAFLAQRI  227 (480)
Q Consensus       149 ~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~-~~~~~v~~~~~~~ae~~Kl~~N~~~~~~i  227 (480)
                      .+.-++.|.......... ......++++++    +++..+.+.++|+.+ +. ..++..+.+.+.+.|.+.|.+..+..
T Consensus       127 ~~v~~~~~~~~~~~~~~~-~~~~~~~~~~g~----~~~~~~~v~~l~~~~~G~-~~~~~~~~~~a~~~k~~~~~~~~~~~  200 (212)
T 1jay_A          127 KVVSALHTIPAARFANLD-EKFDWDVPVCGD----DDESKKVVMSLISEIDGL-RPLDAGPLSNSRLVESLTPLILNIMR  200 (212)
T ss_dssp             CEEECCTTCCHHHHHCTT-CCCCEEEEEEES----CHHHHHHHHHHHHHSTTE-EEEEEESGGGHHHHHTHHHHHHHHHH
T ss_pred             eEEEEccchHHHHhhCcC-CCCCccEEEECC----cHHHHHHHHHHHHHcCCC-CceeccchhHHHHhcchHHHHHHHHH
Confidence            233334465444332211 111113456665    378899999999998 63 34567789999999999998776543

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=99.53  E-value=9.7e-14  Score=134.10  Aligned_cols=190  Identities=10%  Similarity=0.166  Sum_probs=119.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|.||.++|..|+++  | ++|++||+++++.+.+.+.                  -+++.++++.+++ ++|
T Consensus         1 m~i~iiG~G~mG~~~a~~l~~~--g~~~v~~~~r~~~~~~~~~~~------------------~g~~~~~~~~~~~-~~D   59 (263)
T 1yqg_A            1 MNVYFLGGGNMAAAVAGGLVKQ--GGYRIYIANRGAEKRERLEKE------------------LGVETSATLPELH-SDD   59 (263)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--CSCEEEEECSSHHHHHHHHHH------------------TCCEEESSCCCCC-TTS
T ss_pred             CEEEEECchHHHHHHHHHHHHC--CCCeEEEECCCHHHHHHHHHh------------------cCCEEeCCHHHHh-cCC
Confidence            7999999999999999999998  8 9999999999999887642                  0245566777777 999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe-cCCccchHHHHHHHHHhcCCCCcee-Eee-CCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK-STVPVKTAEAIEKILTHNSREIKYQ-ILS-NPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~~~-v~~-~Pe  157 (480)
                      +||+||| +              ..+.++++++.+  + +++|++. |++++   +.+.+.+.+   +..+. ... .|.
T Consensus        60 ~vi~~v~-~--------------~~~~~v~~~l~~--~-~~ivv~~~~g~~~---~~l~~~~~~---~~~~v~~~~~~~~  115 (263)
T 1yqg_A           60 VLILAVK-P--------------QDMEAACKNIRT--N-GALVLSVAAGLSV---GTLSRYLGG---TRRIVRVMPNTPG  115 (263)
T ss_dssp             EEEECSC-H--------------HHHHHHHTTCCC--T-TCEEEECCTTCCH---HHHHHHTTS---CCCEEEEECCGGG
T ss_pred             EEEEEeC-c--------------hhHHHHHHHhcc--C-CCEEEEecCCCCH---HHHHHHcCC---CCcEEEEcCCHHH
Confidence            9999998 3              234566655544  4 7888876 66665   445554433   11221 111 132


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeC-ChhHHHHhhhH--HhHHHHHHHHHHHHHH
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITT-NLWSAELSKLA--ANAFLAQRISSVNAMS  234 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~-~~~~ae~~Kl~--~N~~~~~~ia~~nE~~  234 (480)
                      ....|..        .++.|+   ..+++..+.++++|+.++  ..++.. +-.-..++-+.  .+.+..   .++..+.
T Consensus       116 ~~~~g~~--------~i~~~~---~~~~~~~~~~~~l~~~~g--~~~~~~~~~~~~~~~al~g~~~~~~~---~~~~~l~  179 (263)
T 1yqg_A          116 KIGLGVS--------GMYAEA---EVSETDRRIADRIMKSVG--LTVWLDDEEKMHGITGISGSGPAYVF---YLLDALQ  179 (263)
T ss_dssp             GGTCEEE--------EEECCT---TSCHHHHHHHHHHHHTTE--EEEECSSTTHHHHHHHHTTSHHHHHH---HHHHHHH
T ss_pred             HHcCceE--------EEEcCC---CCCHHHHHHHHHHHHhCC--CEEEeCChhhccHHHHHHccHHHHHH---HHHHHHH
Confidence            2222211        233332   124788999999999874  345444 21112222221  233333   3334444


Q ss_pred             HHHHHhCCCHHHHHHHhc
Q 011654          235 ALCEATGADVTQVSHAIG  252 (480)
Q Consensus       235 ~l~~~~Gid~~~v~~~~~  252 (480)
                      ..+++.|++.+++.+++.
T Consensus       180 e~~~~~G~~~~~~~~~~~  197 (263)
T 1yqg_A          180 NAAIRQGFDMAEARALSL  197 (263)
T ss_dssp             HHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHH
Confidence            458899999988888763

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=99.52  E-value=3.5e-13  Score=130.13  Aligned_cols=187  Identities=12%  Similarity=0.124  Sum_probs=122.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC----CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK----IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G----~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      |||+|||+|.||.++|..|+++  |    ++|++||+++++     .                    +++.++++.++++
T Consensus         5 m~i~iiG~G~mG~~~a~~l~~~--g~~~~~~v~~~~~~~~~-----~--------------------g~~~~~~~~~~~~   57 (262)
T 2rcy_A            5 IKLGFMGLGQMGSALAHGIANA--NIIKKENLFYYGPSKKN-----T--------------------TLNYMSSNEELAR   57 (262)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHH--TSSCGGGEEEECSSCCS-----S--------------------SSEECSCHHHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCCCCCeEEEEeCCccc-----C--------------------ceEEeCCHHHHHh
Confidence            7999999999999999999988  8    799999998764     1                    2455678888889


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCce-eE-eeC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKY-QI-LSN  155 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~-~v-~~~  155 (480)
                      ++|+||+|||..               .+.++++++.+.++++.+|.+.+++++.   .+.+.+.+..   .+ .+ ...
T Consensus        58 ~~D~vi~~v~~~---------------~~~~v~~~l~~~l~~~~vv~~~~gi~~~---~l~~~~~~~~---~~v~~~p~~  116 (262)
T 2rcy_A           58 HCDIIVCAVKPD---------------IAGSVLNNIKPYLSSKLLISICGGLNIG---KLEEMVGSEN---KIVWVMPNT  116 (262)
T ss_dssp             HCSEEEECSCTT---------------THHHHHHHSGGGCTTCEEEECCSSCCHH---HHHHHHCTTS---EEEEEECCG
T ss_pred             cCCEEEEEeCHH---------------HHHHHHHHHHHhcCCCEEEEECCCCCHH---HHHHHhCCCC---cEEEECCCh
Confidence            999999999832               1467888888888544455556677664   3444443310   11 11 123


Q ss_pred             CccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHH--hHHHHHHHHHHHHH
Q 011654          156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAA--NAFLAQRISSVNAM  233 (480)
Q Consensus       156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~--N~~~~~~ia~~nE~  233 (480)
                      |.....|         ..++.++..  .+++..+.++++|+.++  ..++..+-....++++..  |.+.   ..++..+
T Consensus       117 p~~~~~g---------~~~~~~~~~--~~~~~~~~~~~ll~~~G--~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~al  180 (262)
T 2rcy_A          117 PCLVGEG---------SFIYCSNKN--VNSTDKKYVNDIFNSCG--IIHEIKEKDMDIATAISGCGPAYV---YLFIESL  180 (262)
T ss_dssp             GGGGTCE---------EEEEEECTT--CCHHHHHHHHHHHHTSE--EEEECCGGGHHHHHHHTTSHHHHH---HHHHHHH
T ss_pred             HHHHcCC---------eEEEEeCCC--CCHHHHHHHHHHHHhCC--CEEEeCHHHccHHHHHHccHHHHH---HHHHHHH
Confidence            3333222         123444431  24788999999999884  344444333444555533  4443   4444455


Q ss_pred             HHHHHHhCCCHHHHHHHhc
Q 011654          234 SALCEATGADVTQVSHAIG  252 (480)
Q Consensus       234 ~~l~~~~Gid~~~v~~~~~  252 (480)
                      ...+.+.|++.+++.+.+.
T Consensus       181 ~~~~~~~Gl~~~~~~~~~~  199 (262)
T 2rcy_A          181 IDAGVKNGLSRELSKNLVL  199 (262)
T ss_dssp             HHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHH
Confidence            5567899999988877765

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=99.48  E-value=4.1e-12  Score=130.63  Aligned_cols=218  Identities=15%  Similarity=0.110  Sum_probs=131.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHH-cCCCCeEEEEe---CCHHHHHHH-HCCCCC--CCCCChHHHHHhhcCCCE-EEecCH
Q 011654            1 MVKICCIGAGYVGGPTMAVIAL-KCPKIEVAVVD---ISVSRIAAW-NGDQLP--IYEPGLEDVVTQCRGRNL-FFSTDI   72 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~-~~~G~~V~~~D---~~~~~v~~l-~~~~~~--~~e~~l~~l~~~~~~~~l-~~t~d~   72 (480)
                      ||||+|||+|.||+++|..|++ +  |++|++||   +++++++.+ +++...  ..+++.+..  . ...++ .+++++
T Consensus         2 ~mkI~ViGaG~~G~~~a~~La~~~--G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~--~-~~~~~~~~~~~~   76 (404)
T 3c7a_A            2 TVKVCVCGGGNGAHTLSGLAASRD--GVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQT--E-VKSRPKVITKDP   76 (404)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTST--TEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEE--E-EEECCSEEESCH
T ss_pred             CceEEEECCCHHHHHHHHHHHhCC--CCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccc--e-eeccceEEeCCH
Confidence            4899999999999999999987 5  89999999   988888884 443211  111110000  0 00123 378899


Q ss_pred             HHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeE
Q 011654           73 EKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQI  152 (480)
Q Consensus        73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v  152 (480)
                      +++++++|+||+|||++.               +.++++++.++++++++|+.. +...|......+.+.+.... ....
T Consensus        77 ~~a~~~aD~Vilav~~~~---------------~~~v~~~l~~~l~~~~ivv~~-~~~~G~~~~~~~~l~~~~~~-~v~~  139 (404)
T 3c7a_A           77 EIAISGADVVILTVPAFA---------------HEGYFQAMAPYVQDSALIVGL-PSQAGFEFQCRDILGDKAAA-VSMM  139 (404)
T ss_dssp             HHHHTTCSEEEECSCGGG---------------HHHHHHHHTTTCCTTCEEEET-TCCTTHHHHHHHHHGGGGGT-SEEE
T ss_pred             HHHhCCCCEEEEeCchHH---------------HHHHHHHHHhhCCCCcEEEEc-CCCccHHHHHHHHHHhcCCC-eEEE
Confidence            888899999999998642               467889999999988887753 22234333333444432111 1111


Q ss_pred             e--eCCcc---ccccccccccCCCCeEEEEeCCC--cchHHHHHHHHHHHhccCCCCeE-EeCChhHHHHh---------
Q 011654          153 L--SNPEF---LAEGTAIQDLFNPDRVLIGGRET--PEGQKAIQALKDVYAHWVPEDRI-ITTNLWSAELS---------  215 (480)
Q Consensus       153 ~--~~Pe~---~~~G~a~~~~~~~~~vviG~~~~--~~~~~~~~~~~~l~~~~~~~~~v-~~~~~~~ae~~---------  215 (480)
                      .  ..|..   .+||.++.......++.+|....  ...++..+.++++|..    ..+ +..|+...++.         
T Consensus       140 ~~~~~~~~~~~~gpg~~v~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~di~~~~l~~N~~~~~~~  215 (404)
T 3c7a_A          140 SFETLPWACRIKEFGRKVEVLGTKSVLAASLIKGTAKTVDPLSTLQMLHGAE----PVFRLAKHFLEMLIMSYSFVHPAI  215 (404)
T ss_dssp             EESSCSEEEEEEETTTEEEEEEECSEEEEEEECCSSCCSCHHHHHHHHHCSS----SEEEECSCHHHHHHTTCTTHHHHH
T ss_pred             EecCchHhhcccCCCcEEEEEEECceEEEEEccCCcchHHHHHHHHHHhCCC----CceeEcCCEeeeeecCCceeccHH
Confidence            1  23322   33674444444444666675422  2234555556666542    102 22333322221         


Q ss_pred             ------h-----------hHHh---HHHHHHHHHHHHHHHHHHHh-----CCCH
Q 011654          216 ------K-----------LAAN---AFLAQRISSVNAMSALCEAT-----GADV  244 (480)
Q Consensus       216 ------K-----------l~~N---~~~~~~ia~~nE~~~l~~~~-----Gid~  244 (480)
                            +           +..|   ..+.+..+++.|+..+++++     |+++
T Consensus       216 ~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~E~~~va~a~~~~~~G~~~  269 (404)
T 3c7a_A          216 LFGRWGSWDGKPVPEAPLFYQGIDQATADMLTACSNECKDVANAIMAACPGNDL  269 (404)
T ss_dssp             HHHHHTTCCSCCBSSCCBSGGGCCHHHHHHHHHHHHHHHHHHHHHHHHSTTCCC
T ss_pred             HHHHHHhhhcCCCCCCCccccCCCHHHHHHHHHHHHHHHHHHHHHhhhcCCCCc
Confidence                  1           3343   56677889999999999999     9876

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=99.44  E-value=7.1e-13  Score=123.95  Aligned_cols=155  Identities=17%  Similarity=0.133  Sum_probs=106.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +|||+|||+|.||.++|..|+++  |++|++||++++                                     +++++|
T Consensus        19 ~~~I~iiG~G~mG~~la~~l~~~--g~~V~~~~~~~~-------------------------------------~~~~aD   59 (209)
T 2raf_A           19 GMEITIFGKGNMGQAIGHNFEIA--GHEVTYYGSKDQ-------------------------------------ATTLGE   59 (209)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHT--TCEEEEECTTCC-------------------------------------CSSCCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHH-------------------------------------HhccCC
Confidence            48999999999999999999998  999999998632                                     256899


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-Cc-cc-------h----HHHHHHHHHhcCCC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VP-VK-------T----AEAIEKILTHNSRE  147 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~-~g-------t----~~~l~~~l~~~~~g  147 (480)
                      +||+|||+               ..+.++++++.+.++ +++|++.|+ ++ ++       +    .+.+++.+..    
T Consensus        60 ~vi~av~~---------------~~~~~v~~~l~~~~~-~~~vi~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~~----  119 (209)
T 2raf_A           60 IVIMAVPY---------------PALAALAKQYATQLK-GKIVVDITNPLNFDTWDDLVVPADSSAAQELQQQLPD----  119 (209)
T ss_dssp             EEEECSCH---------------HHHHHHHHHTHHHHT-TSEEEECCCCBCTTTSSSBSSCTTCCHHHHHHHHCTT----
T ss_pred             EEEEcCCc---------------HHHHHHHHHHHHhcC-CCEEEEECCCCCccccccccCCCCCcHHHHHHHHCCC----
Confidence            99999983               235677888888787 888887766 33 22       3    3444443321    


Q ss_pred             Cce----eEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHH
Q 011654          148 IKY----QILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAF  222 (480)
Q Consensus       148 ~~~----~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~  222 (480)
                      ..+    ...++|.+..+...  . ..+..+++++.    +++..+.++++|+.++. ..+...+++.+.+.|.+.|.+
T Consensus       120 ~~vv~~~~~~~~p~~~~~~~~--g-~~~~~~~~~g~----~~~~~~~v~~ll~~~G~-~~~~~~~i~~a~~~K~i~~l~  190 (209)
T 2raf_A          120 SQVLKAFNTTFAATLQSGQVN--G-KEPTTVLVAGN----DDSAKQRFTRALADSPL-EVKDAGKLKRARELEAMGFMQ  190 (209)
T ss_dssp             SEEEECSTTSCHHHHHHSEET--T-TEECEEEEEES----CHHHHHHHHHHTTTSSC-EEEEEESGGGHHHHHHHHHHH
T ss_pred             CcEEEeeecccHhhccccccC--C-CCCceeEEcCC----CHHHHHHHHHHHHHcCC-ceEeCCCHhHHHHhcchHHHH
Confidence            111    11225555443221  1 01224556765    47889999999999852 356677899999999887754

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=99.36  E-value=1.1e-12  Score=123.54  Aligned_cols=166  Identities=14%  Similarity=0.161  Sum_probs=104.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      ||||+|||+|.||.++|..|+++  |++|++ +|+++++++.+.+..                 +....+++ .++++++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~--g~~V~~v~~r~~~~~~~l~~~~-----------------g~~~~~~~-~~~~~~a   82 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAA--QIPAIIANSRGPASLSSVTDRF-----------------GASVKAVE-LKDALQA   82 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHT--TCCEEEECTTCGGGGHHHHHHH-----------------TTTEEECC-HHHHTTS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCCHHHHHHHHHHh-----------------CCCcccCh-HHHHhcC
Confidence            57999999999999999999998  999999 999999888776420                 11112334 4458999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCc------cc------hHHHHHHHHHhcCCC
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVP------VK------TAEAIEKILTHNSRE  147 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~------~g------t~~~l~~~l~~~~~g  147 (480)
                      |+||+|||..               .+.++++++.+ + ++++|+..++.-      +.      +.+.+++.+...   
T Consensus        83 DvVilavp~~---------------~~~~v~~~l~~-~-~~~ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~~---  142 (220)
T 4huj_A           83 DVVILAVPYD---------------SIADIVTQVSD-W-GGQIVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPGA---  142 (220)
T ss_dssp             SEEEEESCGG---------------GHHHHHTTCSC-C-TTCEEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTTC---
T ss_pred             CEEEEeCChH---------------HHHHHHHHhhc-c-CCCEEEEcCCCCCcccccccccCCCcHHHHHHHHCCCC---
Confidence            9999999732               24666777666 4 477777655321      11      455666655421   


Q ss_pred             CceeEee--CCcc-ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHH
Q 011654          148 IKYQILS--NPEF-LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAEL  214 (480)
Q Consensus       148 ~~~~v~~--~Pe~-~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~  214 (480)
                       .+.-++  .|.. ...|.....  .+..+++++.    +++..+.++++|+.++. .++..++.+.|.+
T Consensus       143 -~vv~~~~~~~~~v~~~g~~~~~--~~~~v~~~g~----~~~~~~~v~~l~~~~G~-~~~~~G~l~~a~~  204 (220)
T 4huj_A          143 -KVVKAFNTLPAAVLAADPDKGT--GSRVLFLSGN----HSDANRQVAELISSLGF-APVDLGTLAASGP  204 (220)
T ss_dssp             -EEEEESCSSCHHHHTSCSBCSS--CEEEEEEEES----CHHHHHHHHHHHHHTTC-EEEECCSHHHHHH
T ss_pred             -CEEECCCCCCHHHhhhCcccCC--CCeeEEEeCC----CHHHHHHHHHHHHHhCC-CeEeeCChhhcch
Confidence             111111  1111 111111111  1224556665    48899999999999852 3455677666644

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=99.33  E-value=6.6e-12  Score=123.53  Aligned_cols=192  Identities=11%  Similarity=0.097  Sum_probs=121.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~aD   80 (480)
                      |||+|||+|.||+.+|..|+++  |++|++|+++++.++.....       +.         .....+.+..+++ ..+|
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~--g~~V~~~~r~~~~~~~~~~~-------g~---------~~~~~~~~~~~~~~~~~D   64 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQS--LPHTTLIGRHAKTITYYTVP-------HA---------PAQDIVVKGYEDVTNTFD   64 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHH--CTTCEEEESSCEEEEEESST-------TS---------CCEEEEEEEGGGCCSCEE
T ss_pred             cEEEEECCCHHHHHHHHHHHHC--CCeEEEEEeccCcEEEEecC-------Ce---------eccceecCchHhcCCCCC
Confidence            7999999999999999999998  89999999986543211110       10         0122333444444 7899


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEee-CCccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILS-NPEFL  159 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~-~Pe~~  159 (480)
                      +||+|||..               .+.++++.+.++++++++|+... ...+..+.    +.....  -..+.+ +-.+.
T Consensus        65 ~vilavk~~---------------~~~~~l~~l~~~l~~~~~iv~~~-nGi~~~~~----~~~~~v--~~g~~~~~a~~~  122 (294)
T 3g17_A           65 VIIIAVKTH---------------QLDAVIPHLTYLAHEDTLIILAQ-NGYGQLEH----IPFKNV--CQAVVYISGQKK  122 (294)
T ss_dssp             EEEECSCGG---------------GHHHHGGGHHHHEEEEEEEEECC-SSCCCGGG----CCCSCE--EECEEEEEEEEE
T ss_pred             EEEEeCCcc---------------CHHHHHHHHHHhhCCCCEEEEec-cCcccHhh----CCCCcE--EEEEEEEEEEEc
Confidence            999999852               24678888988888777766432 22222111    211100  000111 11233


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhH------------------
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANA------------------  221 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~------------------  221 (480)
                      +||....   .+..+.++ .     .+..+.+.++|+.-. ....+..|+...+|.|++-|+                  
T Consensus       123 ~pg~v~~---~~~~~~~~-~-----~~~~~~l~~~l~~~~-~~~~~~~di~~~~w~Kl~~N~~inl~al~~~~~g~~l~~  192 (294)
T 3g17_A          123 GDVVTHF---RDYQLRIQ-D-----NALTRQFRDLVQDSQ-IDIVLEANIQQAIWYKLLVNLGINSITALGRQTVAIMHN  192 (294)
T ss_dssp             TTEEEEE---EEEEEEEE-C-----SHHHHHHHHHTTTSS-CEEEEESSHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGS
T ss_pred             CCCEEEE---CCCEEecC-c-----cHHHHHHHHHHHhCC-CceEEChHHHHHHHHHHHHHHHHHHHHHHCCChHHHHcC
Confidence            4454421   13355554 2     356778889998753 123455799999999999887                  


Q ss_pred             --HHHHHHHHHHHHHHHHHHhCCC
Q 011654          222 --FLAQRISSVNAMSALCEATGAD  243 (480)
Q Consensus       222 --~~~~~ia~~nE~~~l~~~~Gid  243 (480)
                        .+.+....++|+..++++.|++
T Consensus       193 ~~~~~l~~~~~~E~~~va~a~G~~  216 (294)
T 3g17_A          193 PEIRILCRQLLLDGCRVAQAEGLN  216 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCC
Confidence              2444566899999999999975

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=99.33  E-value=1.4e-11  Score=134.97  Aligned_cols=204  Identities=16%  Similarity=0.154  Sum_probs=137.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-------hcCCCEEEecCHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-------CRGRNLFFSTDIE   73 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-------~~~~~l~~t~d~~   73 (480)
                      |.||+|||+|.||..+|..++.+  |++|+++|++++.++...+...    ..++.....       ....+++.+++.+
T Consensus       316 i~~v~ViGaG~MG~gIA~~~a~a--G~~V~l~D~~~~~l~~~~~~i~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (742)
T 3zwc_A          316 VSSVGVLGLGTMGRGIAISFARV--GISVVAVESDPKQLDAAKKIIT----FTLEKEASRAHQNGQASAKPKLRFSSSTK  389 (742)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHH----HHHHHHHHHHHTTTCCCCCCCEEEESCGG
T ss_pred             ccEEEEEcccHHHHHHHHHHHhC--CCchhcccchHhhhhhHHHHHH----HHHHHHHHhccccchhhhhhhhcccCcHH
Confidence            46999999999999999999998  9999999999987765443100    001111110       1234678899987


Q ss_pred             HHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEE-EecCCccchHHHHHHHHHhcCCCCceeE
Q 011654           74 KHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVV-EKSTVPVKTAEAIEKILTHNSREIKYQI  152 (480)
Q Consensus        74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi-~~STv~~gt~~~l~~~l~~~~~g~~~~v  152 (480)
                      + +++||+||.||+..           .++  -+++++++.+++++++|+. ++||+++..   |+.   ....-..|..
T Consensus       390 ~-l~~aDlVIEAV~E~-----------l~i--K~~vf~~le~~~~~~aIlASNTSsl~i~~---ia~---~~~~p~r~ig  449 (742)
T 3zwc_A          390 E-LSTVDLVVEAVFED-----------MNL--KKKVFAELSALCKPGAFLCTNTSALNVDD---IAS---STDRPQLVIG  449 (742)
T ss_dssp             G-GGSCSEEEECCCSC-----------HHH--HHHHHHHHHHHSCTTCEEEECCSSSCHHH---HHT---TSSCGGGEEE
T ss_pred             H-HhhCCEEEEecccc-----------HHH--HHHHHHHHhhcCCCCceEEecCCcCChHH---HHh---hcCCcccccc
Confidence            6 89999999999853           333  4889999999999999884 445666542   221   1110011111


Q ss_pred             --eeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhHHHHHHHHHH
Q 011654          153 --LSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANAFLAQRISSV  230 (480)
Q Consensus       153 --~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~~~~~~ia~~  230 (480)
                        .++|....+-      .   .|| .+..|  ++++++.+..+.+.+.+ .+|.+.|     ...++.|   .+...++
T Consensus       450 ~HFfnP~~~m~L------V---Evi-~g~~T--s~e~~~~~~~~~~~lgK-~pV~vkd-----~pGFi~N---Ri~~~~~  508 (742)
T 3zwc_A          450 THFFSPAHVMRL------L---EVI-PSRYS--SPTTIATVMSLSKKIGK-IGVVVGN-----CYGFVGN---RMLAPYY  508 (742)
T ss_dssp             EECCSSTTTCCE------E---EEE-ECSSC--CHHHHHHHHHHHHHTTC-EEEECCC-----STTTTHH---HHHHHHH
T ss_pred             ccccCCCCCCce------E---EEe-cCCCC--CHHHHHHHHHHHHHhCC-CCcccCC-----CCCccHH---HHhhHHH
Confidence              1244433221      1   244 44433  78999999999999874 4566654     3357778   4568899


Q ss_pred             HHHHHHHHHhCCCHHHHHHHhc
Q 011654          231 NAMSALCEATGADVTQVSHAIG  252 (480)
Q Consensus       231 nE~~~l~~~~Gid~~~v~~~~~  252 (480)
                      +|...+.+. |+++.++.+++.
T Consensus       509 ~ea~~l~~e-G~~~~~id~a~~  529 (742)
T 3zwc_A          509 NQGFFLLEE-GSKPEDVDGVLE  529 (742)
T ss_dssp             HHHHHHHHT-TCCHHHHHHHHH
T ss_pred             HHHHHHHHc-CCCHHHHHHHHH
Confidence            999998876 799999998874

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=99.29  E-value=1.4e-11  Score=123.68  Aligned_cols=194  Identities=18%  Similarity=0.151  Sum_probs=118.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR-IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|.||.++|..|++.  |++|+++|+++++ .+...+.                   ++..+ ++++++++||
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~--G~~V~~~~~~~~~~~~~a~~~-------------------G~~~~-~~~e~~~~aD   74 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDS--GVDVTVGLRSGSATVAKAEAH-------------------GLKVA-DVKTAVAAAD   74 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT--TCCEEEECCTTCHHHHHHHHT-------------------TCEEE-CHHHHHHTCS
T ss_pred             CEEEEECchHHHHHHHHHHHHC--cCEEEEEECChHHHHHHHHHC-------------------CCEEc-cHHHHHhcCC
Confidence            7899999999999999999998  8999999998765 3433321                   24455 7878889999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHH-HHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC-C-CCceeEeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR-MIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS-R-EIKYQILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~-~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~-~-g~~~~v~~~Pe  157 (480)
                      +||+|||..               ...++++ ++.+.++++++|++.+++..    .    +++.. . +.++ +..+| 
T Consensus        75 vVilavp~~---------------~~~~v~~~~i~~~l~~~~ivi~~~gv~~----~----~~~~~~~~~~~v-v~~~P-  129 (338)
T 1np3_A           75 VVMILTPDE---------------FQGRLYKEEIEPNLKKGATLAFAHGFSI----H----YNQVVPRADLDV-IMIAP-  129 (338)
T ss_dssp             EEEECSCHH---------------HHHHHHHHHTGGGCCTTCEEEESCCHHH----H----TTSSCCCTTCEE-EEEEE-
T ss_pred             EEEEeCCcH---------------HHHHHHHHHHHhhCCCCCEEEEcCCchh----H----HHhhcCCCCcEE-EeccC-
Confidence            999999842               2366777 88889999998886543221    1    11111 1 2233 33456 


Q ss_pred             cccccccccccC----CCCeEEEEeCCCcchHHHHHHHHHHHhccCCCC-e--EEeCChh-HHHHhhhHHhH-HHHHHHH
Q 011654          158 FLAEGTAIQDLF----NPDRVLIGGRETPEGQKAIQALKDVYAHWVPED-R--IITTNLW-SAELSKLAANA-FLAQRIS  228 (480)
Q Consensus       158 ~~~~G~a~~~~~----~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~-~--v~~~~~~-~ae~~Kl~~N~-~~~~~ia  228 (480)
                       .+|+.+...++    ..+.++.-..  ..+++..+.+.++++.++  . +  ++.+++. ..++..+.+++ +.....+
T Consensus       130 -~gp~~a~~~l~~~G~g~~~ii~~~~--~~~~~a~~~~~~l~~~lG--~~~agv~~~~~~~~~~~~~~~s~~~l~G~lp~  204 (338)
T 1np3_A          130 -KAPGHTVRSEFVKGGGIPDLIAIYQ--DASGNAKNVALSYACGVG--GGRTGIIETTFKDETETDLFGEQAVLCGGCVE  204 (338)
T ss_dssp             -SSCSHHHHHHHHTTCCCCEEEEEEE--CSSSCHHHHHHHHHHHTT--HHHHCEEECCHHHHHHHHHHHHHHTTTHHHHH
T ss_pred             -CCCchhHHHHHhccCCCeEEEEecC--CCCHHHHHHHHHHHHHcC--CCccceEeechhcccchHHHHHHHHHhhhHHH
Confidence             34554433322    2233322111  113567888999999884  3 3  6666653 45556665551 1111223


Q ss_pred             HHHHHHHHHHHhCCCHHHH
Q 011654          229 SVNAMSALCEATGADVTQV  247 (480)
Q Consensus       229 ~~nE~~~l~~~~Gid~~~v  247 (480)
                      ++........+.|+++++.
T Consensus       205 ~ia~~~e~l~~~Gl~~~~a  223 (338)
T 1np3_A          205 LVKAGFETLVEAGYAPEMA  223 (338)
T ss_dssp             HHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHH
Confidence            3333333334678877643

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=99.27  E-value=3.5e-11  Score=112.83  Aligned_cols=171  Identities=16%  Similarity=0.066  Sum_probs=104.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +|||+|||+|.||..+|..|++.  |++|+++|+++++.+.+.+.                   +++.+ +..++++++|
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~--g~~V~~~~r~~~~~~~~~~~-------------------g~~~~-~~~~~~~~~D   85 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGS--GFKVVVGSRNPKRTARLFPS-------------------AAQVT-FQEEAVSSPE   85 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHT--TCCEEEEESSHHHHHHHSBT-------------------TSEEE-EHHHHTTSCS
T ss_pred             CCEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCcee-cHHHHHhCCC
Confidence            47899999999999999999998  89999999999988877642                   23334 6777789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCcc-chHH---HHHHHHHhcCCCCceeEeeCC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPV-KTAE---AIEKILTHNSREIKYQILSNP  156 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~-gt~~---~l~~~l~~~~~g~~~~v~~~P  156 (480)
                      +||+|+|.. ..              .++++ +.+.+ ++++|++.|+..+ .+.+   ...+.+++...+..+.-..++
T Consensus        86 vVi~av~~~-~~--------------~~v~~-l~~~~-~~~~vv~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~  148 (215)
T 2vns_A           86 VIFVAVFRE-HY--------------SSLCS-LSDQL-AGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNV  148 (215)
T ss_dssp             EEEECSCGG-GS--------------GGGGG-GHHHH-TTCEEEECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTT
T ss_pred             EEEECCChH-HH--------------HHHHH-HHHhc-CCCEEEEeCCCcccccccccccHHHHHHHHCCCCeEEecccc
Confidence            999999842 11              12222 44445 6788887766432 2211   112233332211111111222


Q ss_pred             ccc---cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHH
Q 011654          157 EFL---AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAA  219 (480)
Q Consensus       157 e~~---~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~  219 (480)
                      ...   .++.. .  .....++.|+     +++..+.++++|+.++. ..++.++.+.|...+.+.
T Consensus       149 ~~~~~~~~~~~-~--g~~~~~~~g~-----~~~~~~~v~~ll~~~G~-~~~~~g~~~~~~~~e~~~  205 (215)
T 2vns_A          149 ISAWTLQAGPR-D--GNRQVPICGD-----QPEAKRAVSEMALAMGF-MPVDMGSLASAWEVEAMP  205 (215)
T ss_dssp             BCHHHHHTCSC-S--SCCEEEEEES-----CHHHHHHHHHHHHHTTC-EEEECCSGGGHHHHHHSC
T ss_pred             ccHhHhccccc-C--CceeEEEecC-----CHHHHHHHHHHHHHcCC-ceEeecchhhhhHhhhhh
Confidence            111   11211 1  1111344443     37889999999999863 345567788887776443

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.22  E-value=6.3e-11  Score=118.45  Aligned_cols=134  Identities=14%  Similarity=0.170  Sum_probs=95.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |+|+|||+|.||..+|..|+..  |++|++||+++++.+...+.                   ++..+ ++++++++||+
T Consensus       156 ~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~~~~~~~~-------------------g~~~~-~l~e~l~~aDv  213 (330)
T 2gcg_A          156 STVGIIGLGRIGQAIARRLKPF--GVQRFLYTGRQPRPEEAAEF-------------------QAEFV-STPELAAQSDF  213 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGG--TCCEEEEESSSCCHHHHHTT-------------------TCEEC-CHHHHHHHCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcchhHHHhc-------------------CceeC-CHHHHHhhCCE
Confidence            6899999999999999999987  99999999987655544321                   23444 78888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCC---CCceeEeeCCcc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR---EIKYQILSNPEF  158 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe~  158 (480)
                      |++|+|.+....+     ..+        +++.+.++++.++|+.|+.++...+.+.+.+++...   +.|+   +.||.
T Consensus       214 Vi~~vp~~~~t~~-----~i~--------~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv---~~~ep  277 (330)
T 2gcg_A          214 IVVACSLTPATEG-----LCN--------KDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDV---TSPEP  277 (330)
T ss_dssp             EEECCCCCTTTTT-----CBS--------HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESC---CSSSS
T ss_pred             EEEeCCCChHHHH-----hhC--------HHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCC---CCCCC
Confidence            9999986532210     111        345567889999999999988888888888876421   2232   56776


Q ss_pred             ccccccccccCCCCeEEE
Q 011654          159 LAEGTAIQDLFNPDRVLI  176 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vvi  176 (480)
                      ..+++.   ++..+.+++
T Consensus       278 l~~~~~---l~~~~nvi~  292 (330)
T 2gcg_A          278 LPTNHP---LLTLKNCVI  292 (330)
T ss_dssp             CCTTCG---GGGCTTEEE
T ss_pred             CCCCCh---hhcCCCEEE
Confidence            555544   344445665

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=99.20  E-value=1.6e-11  Score=119.71  Aligned_cols=183  Identities=13%  Similarity=0.117  Sum_probs=106.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEV-AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      ||||+|||+|.||.++|..|+++   ++| .+||+++++.+.+.+..                 +.  .+++++++++++
T Consensus         2 ~m~I~iIG~G~mG~~la~~l~~~---~~v~~v~~~~~~~~~~~~~~~-----------------g~--~~~~~~~~~~~~   59 (276)
T 2i76_A            2 SLVLNFVGTGTLTRFFLECLKDR---YEIGYILSRSIDRARNLAEVY-----------------GG--KAATLEKHPELN   59 (276)
T ss_dssp             --CCEEESCCHHHHHHHHTTC-------CCCEECSSHHHHHHHHHHT-----------------CC--CCCSSCCCCC--
T ss_pred             CceEEEEeCCHHHHHHHHHHHHc---CcEEEEEeCCHHHHHHHHHHc-----------------CC--ccCCHHHHHhcC
Confidence            47999999999999999999864   788 59999999888776410                 11  345666667889


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      |+||+|||...               +.++++++.   +++++|++.|+..+...      +++.     +....+|...
T Consensus        60 DvVilav~~~~---------------~~~v~~~l~---~~~~ivi~~s~~~~~~~------l~~~-----~~~~~~p~~~  110 (276)
T 2i76_A           60 GVVFVIVPDRY---------------IKTVANHLN---LGDAVLVHCSGFLSSEI------FKKS-----GRASIHPNFS  110 (276)
T ss_dssp             -CEEECSCTTT---------------HHHHHTTTC---CSSCCEEECCSSSCGGG------GCSS-----SEEEEEECSC
T ss_pred             CEEEEeCChHH---------------HHHHHHHhc---cCCCEEEECCCCCcHHH------HHHh-----hccccchhhh
Confidence            99999998532               245555443   57888887775433321      1111     1222333332


Q ss_pred             cccc--cccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChh---HHHHhhhHHhHHHHHHHHHHHHHH
Q 011654          160 AEGT--AIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLW---SAELSKLAANAFLAQRISSVNAMS  234 (480)
Q Consensus       160 ~~G~--a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~---~ae~~Kl~~N~~~~~~ia~~nE~~  234 (480)
                      .+|.  ....+...+ +++++.     ++..+.++++++.++. ..+.+....   .-...+++.|...    .+++|+.
T Consensus       111 ~~g~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~l~~~lG~-~~~~v~~~~~~~~~~~~~l~~n~~~----~~~~~a~  179 (276)
T 2i76_A          111 FSSLEKALEMKDQIV-FGLEGD-----ERGLPIVKKIAEEISG-KYFVIPSEKKKAYHLAAVIASNFPV----ALAYLSK  179 (276)
T ss_dssp             C--CTTGGGCGGGCC-EEECCC-----TTTHHHHHHHHHHHCS-CEEECCGGGHHHHHHHHHHHHTTHH----HHHHHHH
T ss_pred             cCCCchhHHHhCCCe-EEEEeC-----hHHHHHHHHHHHHhCC-CEEEECHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence            2221  111122222 344543     4458889999999852 344444222   1234477777432    4567777


Q ss_pred             HHHHHhCCCHH
Q 011654          235 ALCEATGADVT  245 (480)
Q Consensus       235 ~l~~~~Gid~~  245 (480)
                      .++++.|++.+
T Consensus       180 ~~~~~~Gl~~~  190 (276)
T 2i76_A          180 RIYTLLGLDEP  190 (276)
T ss_dssp             HHHHTTTCSCH
T ss_pred             HHHHHcCCChH
Confidence            89999999877

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=99.18  E-value=6.2e-11  Score=117.32  Aligned_cols=200  Identities=14%  Similarity=0.090  Sum_probs=115.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||+.+|..|+ +  |++|++|++++++++.+++....+..++.. .     ...+..+   .++...+|+
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~--g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~-~-----~~~~~~~---~~~~~~~D~   70 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-L--YHDVTVVTRRQEQAAAIQSEGIRLYKGGEE-F-----RADCSAD---TSINSDFDL   70 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-T--TSEEEEECSCHHHHHHHHHHCEEEEETTEE-E-----EECCEEE---SSCCSCCSE
T ss_pred             CEEEEECCCHHHHHHHHHHh-c--CCceEEEECCHHHHHHHHhCCceEecCCCe-e-----ccccccc---ccccCCCCE
Confidence            89999999999999999999 7  999999999999988887532222111110 0     0011111   123578999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCce--eEee-CCcc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKY--QILS-NPEF  158 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~--~v~~-~Pe~  158 (480)
                      ||+|||..            +   +.++++.+.+. .+++ |+. -....+..+.+.+.+..    ..+  .+++ +-.+
T Consensus        71 vilavK~~------------~---~~~~l~~l~~~-~~~~-ivs-~~nGi~~~e~l~~~~~~----~~vl~g~~~~~a~~  128 (307)
T 3ego_A           71 LVVTVKQH------------Q---LQSVFSSLERI-GKTN-ILF-LQNGMGHIHDLKDWHVG----HSIYVGIVEHGAVR  128 (307)
T ss_dssp             EEECCCGG------------G---HHHHHHHTTSS-CCCE-EEE-CCSSSHHHHHHHTCCCS----CEEEEEEECCEEEE
T ss_pred             EEEEeCHH------------H---HHHHHHHhhcC-CCCe-EEE-ecCCccHHHHHHHhCCC----CcEEEEEEeeceEE
Confidence            99999842            2   46777777664 4455 432 23333433333322211    111  1222 2234


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhHHhH-----------------
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLAANA-----------------  221 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~~N~-----------------  221 (480)
                      ..||...+.-  ..++.+|..+..  .+..+.+.++|..-. -...+..|+....|.|++-|+                 
T Consensus       129 ~~pg~v~~~~--~g~~~iG~~~~~--~~~~~~l~~~l~~ag-~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~  203 (307)
T 3ego_A          129 KSDTAVDHTG--LGAIKWSAFDDA--EPDRLNILFQHNHSD-FPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELL  203 (307)
T ss_dssp             CSSSEEEEEE--CCCEEEEECTTC--CGGGGTTTTSSCCTT-SCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHH
T ss_pred             CCCCEEEEee--eeeEEEEeCCCC--cHHHHHHHHHhhhCC-CCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhh
Confidence            4566654332  235677875322  122333333443321 123445699999999999996                 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHh
Q 011654          222 ----FLAQRISSVNAMSALCEAT  240 (480)
Q Consensus       222 ----~~~~~ia~~nE~~~l~~~~  240 (480)
                          .+.+....+.|+..+++..
T Consensus       204 ~~~~~~~l~~~l~~E~~~va~~~  226 (307)
T 3ego_A          204 TTPAYLAFMKLVFQEACRILKLE  226 (307)
T ss_dssp             HSHHHHHHHHHHHHHHHHHHTCS
T ss_pred             cChhHHHHHHHHHHHHHHHHhcc
Confidence                2344556777777777643

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=99.16  E-value=7.7e-10  Score=104.30  Aligned_cols=154  Identities=8%  Similarity=0.013  Sum_probs=101.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .|||+|||+|.||.+||..|.++  ||+|++||+.                                     ++ +.+||
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~--G~~V~~~~~~-------------------------------------~~-~~~aD   45 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSV--GHYVTVLHAP-------------------------------------ED-IRDFE   45 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHT--TCEEEECSSG-------------------------------------GG-GGGCS
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHC--CCEEEEecCH-------------------------------------HH-hccCC
Confidence            38999999999999999999998  9999999972                                     11 46788


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC-ccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV-PVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                        |+|||..               .+.++++++.++++++++|+++|+. +....+.+    .+.+  . .++..+|-+.
T Consensus        46 --ilavP~~---------------ai~~vl~~l~~~l~~g~ivvd~sgs~~~~vl~~~----~~~g--~-~fvg~HPm~g  101 (232)
T 3dfu_A           46 --LVVIDAH---------------GVEGYVEKLSAFARRGQMFLHTSLTHGITVMDPL----ETSG--G-IVMSAHPIGQ  101 (232)
T ss_dssp             --EEEECSS---------------CHHHHHHHHHTTCCTTCEEEECCSSCCGGGGHHH----HHTT--C-EEEEEEEEET
T ss_pred             --EEEEcHH---------------HHHHHHHHHHHhcCCCCEEEEECCcCHHHHHHHH----HhCC--C-cEEEeeeCCC
Confidence              9999853               2577888999999999999987643 32222222    2222  1 3456678642


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHH--HhhhHHhHHHHHHHHHHHHHHHHH
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAE--LSKLAANAFLAQRISSVNAMSALC  237 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae--~~Kl~~N~~~~~~ia~~nE~~~l~  237 (480)
                      .           +.++.++     +++..+.+++|++.++  .+++.++...--  ..-++.   .-..++++++...+.
T Consensus       102 ~-----------~~~i~a~-----d~~a~~~l~~L~~~lG--~~vv~~~~~~hd~~~AAvsh---~nhLv~L~~~A~~ll  160 (232)
T 3dfu_A          102 D-----------RWVASAL-----DELGETIVGLLVGELG--GSIVEIADDKRAQLAAALTY---AGFLSTLQRDASYFL  160 (232)
T ss_dssp             T-----------EEEEEES-----SHHHHHHHHHHHHHTT--CEECCCCGGGHHHHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred             C-----------ceeeeCC-----CHHHHHHHHHHHHHhC--CEEEEeCHHHHhHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            1           1334443     3778999999999985  466666543211  111122   223355666666665


Q ss_pred             HH
Q 011654          238 EA  239 (480)
Q Consensus       238 ~~  239 (480)
                      +.
T Consensus       161 ~~  162 (232)
T 3dfu_A          161 DE  162 (232)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.16  E-value=8e-11  Score=117.84  Aligned_cols=131  Identities=18%  Similarity=0.155  Sum_probs=93.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |+|+|||+|.||..+|..|+..  |++|++||++++. +...+.                   ++.+ +++++++++||+
T Consensus       151 ~~vgIIG~G~iG~~iA~~l~~~--G~~V~~~d~~~~~-~~~~~~-------------------g~~~-~~l~~~l~~aDv  207 (334)
T 2dbq_A          151 KTIGIIGLGRIGQAIAKRAKGF--NMRILYYSRTRKE-EVEREL-------------------NAEF-KPLEDLLRESDF  207 (334)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCH-HHHHHH-------------------CCEE-CCHHHHHHHCSE
T ss_pred             CEEEEEccCHHHHHHHHHHHhC--CCEEEEECCCcch-hhHhhc-------------------Cccc-CCHHHHHhhCCE
Confidence            6899999999999999999987  9999999998766 333210                   1333 478888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCC---CCceeEeeCCc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR---EIKYQILSNPE  157 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe  157 (480)
                      |++|+|.+....              ..+ +++.+.++++.++|+.|+.++...+.+.+.|++...   +.|+   +.||
T Consensus       208 Vil~vp~~~~t~--------------~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv---~~~E  270 (334)
T 2dbq_A          208 VVLAVPLTRETY--------------HLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDV---FEEE  270 (334)
T ss_dssp             EEECCCCCTTTT--------------TCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESC---CSSS
T ss_pred             EEECCCCChHHH--------------HhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecC---CCCC
Confidence            999998754221              111 345567899999999999888888888888876321   1232   5665


Q ss_pred             cccccccccccCCCCeEEE
Q 011654          158 FLAEGTAIQDLFNPDRVLI  176 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vvi  176 (480)
                      .    .+...++..+.+++
T Consensus       271 P----~~~~~L~~~~~vi~  285 (334)
T 2dbq_A          271 P----YYNEELFKLDNVVL  285 (334)
T ss_dssp             S----CCCHHHHHCTTEEE
T ss_pred             C----CCCchhhcCCCEEE
Confidence            3    22334555556665

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.73  E-value=5.5e-12  Score=117.13  Aligned_cols=166  Identities=14%  Similarity=0.139  Sum_probs=100.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||..+|..|.+.  |++|++||++++ .+.+..                   .++..+ ++.++++.+|+
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~--G~~V~~~~r~~~-~~~~~~-------------------~g~~~~-~~~~~~~~aDv   76 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQC--GYSVVFGSRNPQ-VSSLLP-------------------RGAEVL-CYSEAASRSDV   76 (201)
Confidence            7899999999999999999988  899999999876 433321                   123333 56667889999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCcc------chHHHHHHHHHhcCCCCceeEeeC
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPV------KTAEAIEKILTHNSREIKYQILSN  155 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~------gt~~~l~~~l~~~~~g~~~~v~~~  155 (480)
                      ||+|||...               +++++ ++.. +.++++||+.++..+      +..+.+.+.+..... .. .+...
T Consensus        77 Vilav~~~~---------------~~~v~-~l~~-~~~~~ivI~~~~G~~~~~~~~~~~~~l~~~~~~~~v-vr-a~~n~  137 (201)
T 2yjz_A           77 IVLAVHREH---------------YDFLA-ELAD-SLKGRVLIDVSNNQKMNQYPESNAEYLAQLVPGAHV-VK-AFNTI  137 (201)
Confidence            999998531               12333 3433 345788887776543      222334333322100 00 01111


Q ss_pred             Cc-cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhH
Q 011654          156 PE-FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLA  218 (480)
Q Consensus       156 Pe-~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~  218 (480)
                      |. ...+|...   .....++.|++     ++..+.++++|+.++. ..++.++++.+.+.|.+
T Consensus       138 ~a~~~~~g~l~---g~~~~~~~g~~-----~~~~~~v~~ll~~~G~-~~~~~G~l~~a~~~e~~  192 (201)
T 2yjz_A          138 SAWALQSGTLD---ASRQVFVCGND-----SKAKDRVMDIARTLGL-TPLDQGSLVAAKEIENY  192 (201)
Confidence            11 12223210   01113455643     6788899999999863 45667788888888865

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=99.12  E-value=2.5e-10  Score=113.16  Aligned_cols=122  Identities=24%  Similarity=0.229  Sum_probs=85.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|+||.++|..|+.+..|++|++||+++++++.+.....    .....   .....++++++|+++ +++||+
T Consensus         1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~----~~~~~---~~~~~~i~~t~d~~~-l~~aDv   72 (310)
T 1guz_A            1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMY----ESGPV---GLFDTKVTGSNDYAD-TANSDI   72 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHH----TTHHH---HTCCCEEEEESCGGG-GTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHH----hhhhc---ccCCcEEEECCCHHH-HCCCCE
Confidence            7999999999999999999985337999999999988876542100    00000   011345788889876 999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCCEEEEecCCccchHHHH
Q 011654           82 VFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIANVSNSNKIVVEKSTVPVKTAEAI  137 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l  137 (480)
                      ||+|+|+|...+    ....|+     +.++++.+.+.++.+ +.+|++ -|+|+++...+
T Consensus        73 Viiav~~p~~~g----~~r~dl~~~n~~i~~~i~~~i~~~~~-~~~viv-~tNP~~~~~~~  127 (310)
T 1guz_A           73 VIITAGLPRKPG----MTREDLLMKNAGIVKEVTDNIMKHSK-NPIIIV-VSNPLDIMTHV  127 (310)
T ss_dssp             EEECCSCCCCTT----CCHHHHHHHHHHHHHHHHHHHHHHCS-SCEEEE-CCSSHHHHHHH
T ss_pred             EEEeCCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHhCC-CcEEEE-EcCchHHHHHH
Confidence            999999986431    113444     666788888888865 444444 37888875443

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.09  E-value=1.7e-10  Score=115.98  Aligned_cols=109  Identities=14%  Similarity=0.080  Sum_probs=81.8

Q ss_pred             cEEEEEcCChhHHHHHHHHH-HcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIA-LKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|+|||+|.||..+|..+. ..  |++|++||++++..+...+                   .++..++++++++++||
T Consensus       164 ~~vgIIG~G~IG~~vA~~l~~~~--G~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~aD  222 (348)
T 2w2k_A          164 HVLGAVGLGAIQKEIARKAVHGL--GMKLVYYDVAPADAETEKA-------------------LGAERVDSLEELARRSD  222 (348)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT--CCEEEEECSSCCCHHHHHH-------------------HTCEECSSHHHHHHHCS
T ss_pred             CEEEEEEECHHHHHHHHHHHHhc--CCEEEEECCCCcchhhHhh-------------------cCcEEeCCHHHHhccCC
Confidence            58999999999999999998 76  8999999998754443321                   02345567888889999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      +|++|+|.....           ..+.  -+++.+.++++.++|+.|+.++...+.+.+.|++.
T Consensus       223 vVil~vp~~~~t-----------~~li--~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~  273 (348)
T 2w2k_A          223 CVSVSVPYMKLT-----------HHLI--DEAFFAAMKPGSRIVNTARGPVISQDALIAALKSG  273 (348)
T ss_dssp             EEEECCCCSGGG-----------TTCB--CHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             EEEEeCCCChHH-----------HHHh--hHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhC
Confidence            999999864321           1111  02345678999999999999888888888888763

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=99.08  E-value=1.2e-09  Score=109.20  Aligned_cols=121  Identities=18%  Similarity=0.226  Sum_probs=86.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|||+|+||.++|..|+.+  |+ +|++||+++++++.....        +.+.... ....++++|+|+++++++|
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~--g~~~V~L~D~~~~~~~~~~~~--------l~~~~~~~~~~~~i~~t~d~~ea~~~a   79 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALR--ELADVVLYDVVKGMPEGKALD--------LSHVTSVVDTNVSVRAEYSYEAALTGA   79 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSHHHHHHHH--------HHHHHHHTTCCCCEEEECSHHHHHTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECChhHHHHHHHH--------HHhhhhccCCCCEEEEeCCHHHHhCCC
Confidence            6999999999999999999998  88 999999999887763211        1111111 1235688899998889999


Q ss_pred             cEEEEeccCCCCcCCCCCC----CCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHH
Q 011654           80 DIVFVSVNTPTKTQGLGAG----KAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAI  137 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~----~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l  137 (480)
                      |+||+++++|....   ..    ...|     ...++++++.+.++. ++.++++ .|+|.++.-.+
T Consensus        80 DiVi~a~g~p~~~g---~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~-~tNP~~~~t~~  141 (331)
T 1pzg_A           80 DCVIVTAGLTKVPG---KPDSEWSRNDLLPFNSKIIREIGQNIKKYC-PKTFIIV-VTNPLDCMVKV  141 (331)
T ss_dssp             SEEEECCSCSSCTT---CCGGGCCGGGGHHHHHHHHHHHHHHHHHHC-TTCEEEE-CCSSHHHHHHH
T ss_pred             CEEEEccCCCCCCC---cccCCCCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEE-EcCchHHHHHH
Confidence            99999997775431   00    1234     345788888898887 5565554 68888876443

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=99.01  E-value=2.1e-09  Score=106.87  Aligned_cols=123  Identities=20%  Similarity=0.208  Sum_probs=84.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|||+|+||.++|..|+.+  |+ +|+++|+++++++.....        +...... ....++++++|+ +++++|
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~--g~~~v~L~Di~~~~l~~~~~~--------l~~~~~~~~~~~~i~~t~d~-~al~~a   73 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQK--NLGDVVLFDIVKNMPHGKALD--------TSHTNVMAYSNCKVSGSNTY-DDLAGA   73 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSHHHHHHHH--------HHTHHHHHTCCCCEEEECCG-GGGTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCHHHHHHHHHH--------HHhhhhhcCCCcEEEECCCH-HHhCCC
Confidence            7999999999999999999998  77 899999999887654321        1111111 123568888998 679999


Q ss_pred             cEEEEeccCCCCcCCCC-CCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHH
Q 011654           80 DIVFVSVNTPTKTQGLG-AGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAI  137 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~-~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l  137 (480)
                      |+||+++++|...+..+ +....|     ...++++++.+.++. ++.++++ -|+|.++...+
T Consensus        74 D~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv-~tNP~~~~t~~  135 (322)
T 1t2d_A           74 DVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNC-PNAFIIV-VTNPVDVMVQL  135 (322)
T ss_dssp             SEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHC-TTSEEEE-CSSSHHHHHHH
T ss_pred             CEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEE-ecCChHHHHHH
Confidence            99999998776431100 000222     245778888888887 5666655 37787775433

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.00  E-value=6.7e-10  Score=108.58  Aligned_cols=105  Identities=15%  Similarity=0.154  Sum_probs=81.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||.++|..|...  |++|++||++++..+                        .....+++++++++||+
T Consensus       123 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~------------------------~~~~~~~l~ell~~aDi  176 (290)
T 3gvx_A          123 KALGILGYGGIGRRVAHLAKAF--GMRVIAYTRSSVDQN------------------------VDVISESPADLFRQSDF  176 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSCCCTT------------------------CSEECSSHHHHHHHCSE
T ss_pred             chheeeccCchhHHHHHHHHhh--CcEEEEEeccccccc------------------------cccccCChHHHhhccCe
Confidence            5899999999999999999988  999999999753211                        12355688898999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~  145 (480)
                      |++|+|......+     ..        -++..+.++++.++|+.|+.++-..+.+.+.|++..
T Consensus       177 V~l~~P~t~~t~~-----li--------~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~  227 (290)
T 3gvx_A          177 VLIAIPLTDKTRG-----MV--------NSRLLANARKNLTIVNVARADVVSKPDMIGFLKERS  227 (290)
T ss_dssp             EEECCCCCTTTTT-----CB--------SHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCT
T ss_pred             EEEEeeccccchh-----hh--------hHHHHhhhhcCceEEEeehhcccCCcchhhhhhhcc
Confidence            9999984322110     11        145667889999999999988888888888887653

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=99.00  E-value=3.8e-09  Score=105.36  Aligned_cols=117  Identities=22%  Similarity=0.304  Sum_probs=83.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|||+|.||.++|..|+.+  |+ +|++||+++++++.....        +...... ....++++++|+ +++++|
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~--g~~~V~L~Di~~~~l~~~~~~--------l~~~~~~~~~~~~i~~t~d~-~al~~a   83 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQK--DLGDVYMFDIIEGVPQGKALD--------LNHCMALIGSPAKIFGENNY-EYLQNS   83 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSTTHHHHHHHH--------HHHHHHHHTCCCCEEEESCG-GGGTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEECCHHHHHHHHHH--------HHhHhhccCCCCEEEECCCH-HHHCCC
Confidence            6899999999999999999998  88 999999999887753211        1111111 123568898998 679999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      |+||+++++|.....    ...|+     ..++++++.+.++. ++.++++. |.|.++..
T Consensus        84 D~VI~avg~p~k~g~----tr~dl~~~n~~i~~~i~~~i~~~~-p~a~viv~-tNP~~~~t  138 (328)
T 2hjr_A           84 DVVIITAGVPRKPNM----TRSDLLTVNAKIVGSVAENVGKYC-PNAFVICI-TNPLDAMV  138 (328)
T ss_dssp             SEEEECCSCCCCTTC----CSGGGHHHHHHHHHHHHHHHHHHC-TTCEEEEC-CSSHHHHH
T ss_pred             CEEEEcCCCCCCCCC----chhhHHhhhHHHHHHHHHHHHHHC-CCeEEEEe-cCchHHHH
Confidence            999999987764311    12333     55778888888887 56666553 66766543

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=98.99  E-value=1.2e-09  Score=108.99  Aligned_cols=104  Identities=13%  Similarity=0.169  Sum_probs=78.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..|...  |++|++||++++..+                        +....+++++++++||+
T Consensus       165 ~~vgIIG~G~iG~~vA~~l~~~--G~~V~~~dr~~~~~~------------------------g~~~~~~l~ell~~aDv  218 (333)
T 3ba1_A          165 KRVGIIGLGRIGLAVAERAEAF--DCPISYFSRSKKPNT------------------------NYTYYGSVVELASNSDI  218 (333)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT--TCCEEEECSSCCTTC------------------------CSEEESCHHHHHHTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCchhcc------------------------CceecCCHHHHHhcCCE
Confidence            5899999999999999999987  999999999764210                        12345688888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|......+     ..+        +++.+.+++++++|+.|+..+-.++.+.+.|++.
T Consensus       219 Vil~vP~~~~t~~-----li~--------~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g  268 (333)
T 3ba1_A          219 LVVACPLTPETTH-----IIN--------REVIDALGPKGVLINIGRGPHVDEPELVSALVEG  268 (333)
T ss_dssp             EEECSCCCGGGTT-----CBC--------HHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             EEEecCCChHHHH-----Hhh--------HHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcC
Confidence            9999986422100     111        2344567889999999998888888888888764

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=98.96  E-value=4.4e-09  Score=104.03  Aligned_cols=119  Identities=18%  Similarity=0.210  Sum_probs=80.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-ecCHHHHhc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPK--IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-STDIEKHVA   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t~d~~~a~~   77 (480)
                      ||||+|||+|.||.++|..|+.+  |  ++|++||+++++++.+...        +..... ......+. ++++ ++++
T Consensus         1 m~kI~VIGaG~~G~~la~~L~~~--g~~~~V~l~d~~~~~~~~~~~~--------l~~~~~-~~~~~~~~~~~d~-~~~~   68 (309)
T 1hyh_A            1 ARKIGIIGLGNVGAAVAHGLIAQ--GVADDYVFIDANEAKVKADQID--------FQDAMA-NLEAHGNIVINDW-AALA   68 (309)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHH--------HHHHGG-GSSSCCEEEESCG-GGGT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEcCCHHHHHHHHHH--------HHhhhh-hcCCCeEEEeCCH-HHhC
Confidence            78999999999999999999998  7  8999999999988776531        000000 00112333 5777 6689


Q ss_pred             cCcEEEEeccCCCC----cCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           78 EADIVFVSVNTPTK----TQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        78 ~aDvVii~Vptp~~----~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      +||+||+|+|.|..    ...   ++    ..+...++++++.+.++.+ +.+|++ .|.|.++...
T Consensus        69 ~aDvViiav~~~~~~~~~~g~---~r~~l~~~n~~i~~~i~~~i~~~~~-~~~ii~-~tNp~~~~~~  130 (309)
T 1hyh_A           69 DADVVISTLGNIKLQQDNPTG---DRFAELKFTSSMVQSVGTNLKESGF-HGVLVV-ISNPVDVITA  130 (309)
T ss_dssp             TCSEEEECCSCGGGTC----------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEE-CSSSHHHHHH
T ss_pred             CCCEEEEecCCcccCCCCCCC---CHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEE-EcCcHHHHHH
Confidence            99999999997642    100   00    0123446778888888764 566655 6778776443

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=98.94  E-value=5.7e-09  Score=104.84  Aligned_cols=109  Identities=12%  Similarity=0.096  Sum_probs=82.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|||||+|.||.++|..+...  |++|++||+++..-.....                    +++..+++++++++||+
T Consensus       161 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~--------------------g~~~~~~l~ell~~aDi  218 (352)
T 3gg9_A          161 QTLGIFGYGKIGQLVAGYGRAF--GMNVLVWGRENSKERARAD--------------------GFAVAESKDALFEQSDV  218 (352)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSHHHHHHHHHT--------------------TCEECSSHHHHHHHCSE
T ss_pred             CEEEEEeECHHHHHHHHHHHhC--CCEEEEECCCCCHHHHHhc--------------------CceEeCCHHHHHhhCCE
Confidence            5899999999999999999887  9999999998643222222                    24566788998999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~  145 (480)
                      |++|+|......+     ..        -++..+.++++.++|+.|+.++-..+.+.+.|++..
T Consensus       219 V~l~~Plt~~t~~-----li--------~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~  269 (352)
T 3gg9_A          219 LSVHLRLNDETRS-----II--------TVADLTRMKPTALFVNTSRAELVEENGMVTALNRGR  269 (352)
T ss_dssp             EEECCCCSTTTTT-----CB--------CHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTS
T ss_pred             EEEeccCcHHHHH-----hh--------CHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCC
Confidence            9999985322110     11        134567789999999999887777777888887653

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=98.94  E-value=4.4e-09  Score=105.08  Aligned_cols=132  Identities=11%  Similarity=0.139  Sum_probs=89.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..|+..  |++|++||++++. +...+                   .++..+ ++++++++||+
T Consensus       147 ~~vgIIG~G~iG~~vA~~l~~~--G~~V~~~d~~~~~-~~~~~-------------------~g~~~~-~l~e~l~~aDi  203 (333)
T 2d0i_A          147 KKVGILGMGAIGKAIARRLIPF--GVKLYYWSRHRKV-NVEKE-------------------LKARYM-DIDELLEKSDI  203 (333)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGG--TCEEEEECSSCCH-HHHHH-------------------HTEEEC-CHHHHHHHCSE
T ss_pred             CEEEEEccCHHHHHHHHHHHHC--CCEEEEECCCcch-hhhhh-------------------cCceec-CHHHHHhhCCE
Confidence            5899999999999999999987  9999999998765 32221                   024443 78888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCC---CCceeEeeCCcc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR---EIKYQILSNPEF  158 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~---g~~~~v~~~Pe~  158 (480)
                      |++|+|......+     ..+        +.+.+.++++ ++|+.|+..+...+.+.+.|++...   +.|+   +.||.
T Consensus       204 Vil~vp~~~~t~~-----~i~--------~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv---~~~EP  266 (333)
T 2d0i_A          204 VILALPLTRDTYH-----IIN--------EERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDV---FEKEP  266 (333)
T ss_dssp             EEECCCCCTTTTT-----SBC--------HHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESC---CSSSS
T ss_pred             EEEcCCCChHHHH-----HhC--------HHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecC---CCCCC
Confidence            9999987522110     111        2344567889 9999998888777778777776421   2332   46554


Q ss_pred             ccccccccccCCCC-eEEEE
Q 011654          159 LAEGTAIQDLFNPD-RVLIG  177 (480)
Q Consensus       159 ~~~G~a~~~~~~~~-~vviG  177 (480)
                      .. .   ..++..+ .+++.
T Consensus       267 ~~-~---~~L~~~~~nvilt  282 (333)
T 2d0i_A          267 VR-E---HELFKYEWETVLT  282 (333)
T ss_dssp             CS-C---CGGGGCTTTEEEC
T ss_pred             CC-C---chHHcCCCCEEEc
Confidence            32 2   3455555 66654

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=98.94  E-value=6e-09  Score=103.07  Aligned_cols=119  Identities=22%  Similarity=0.302  Sum_probs=80.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHH-hhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVT-QCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~-~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|||+|+||.++|..|+.+  |+ +|+++|+++++++.....        +.+... .....++++++|+ +++++|
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~--g~~~v~L~Di~~~~~~g~~~d--------l~~~~~~~~~~~~i~~t~d~-~a~~~a   71 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAK--ELGDIVLLDIVEGVPQGKALD--------LYEASPIEGFDVRVTGTNNY-ADTANS   71 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSSSSHHHHHHHH--------HHTTHHHHTCCCCEEEESCG-GGGTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCCeEEEEeCCccHHHHHHHh--------HHHhHhhcCCCeEEEECCCH-HHHCCC
Confidence            6999999999999999999988  76 899999998877643211        111100 1123468888898 669999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCCEEEEecCCccchHHHH
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIANVSNSNKIVVEKSTVPVKTAEAI  137 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l  137 (480)
                      |+||+++++|.....    ...|+     ..++++++.+.++. ++.+|++ .|+|.++...+
T Consensus        72 D~Vi~a~g~p~~~g~----~r~dl~~~n~~i~~~i~~~i~~~~-p~a~vi~-~tNPv~~~t~~  128 (309)
T 1ur5_A           72 DVIVVTSGAPRKPGM----SREDLIKVNADITRACISQAAPLS-PNAVIIM-VNNPLDAMTYL  128 (309)
T ss_dssp             SEEEECCCC------------CHHHHHHHHHHHHHHHHHGGGC-TTCEEEE-CCSSHHHHHHH
T ss_pred             CEEEEcCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-cCCchHHHHHH
Confidence            999999998865311    12232     55567777788876 5666655 58888876443

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=98.93  E-value=4.2e-09  Score=104.61  Aligned_cols=107  Identities=11%  Similarity=0.095  Sum_probs=79.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI-SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|+|||+|.||..+|..+...  |++|++||+ +++.......                    +....++++++++.||
T Consensus       147 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~~--------------------g~~~~~~l~ell~~aD  204 (320)
T 1gdh_A          147 KTLGIYGFGSIGQALAKRAQGF--DMDIDYFDTHRASSSDEASY--------------------QATFHDSLDSLLSVSQ  204 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSCCCHHHHHHH--------------------TCEECSSHHHHHHHCS
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCCcChhhhhhc--------------------CcEEcCCHHHHHhhCC
Confidence            5899999999999999999876  899999999 7655221111                    1344557888889999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      +|++|+|.....              +..+ +...+.++++.++|+.|+..+-..+.+.+.|++.
T Consensus       205 vVil~~p~~~~t--------------~~~i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g  255 (320)
T 1gdh_A          205 FFSLNAPSTPET--------------RYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAG  255 (320)
T ss_dssp             EEEECCCCCTTT--------------TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             EEEEeccCchHH--------------HhhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence            999999854211              1111 3455778999999999887666667787778764

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=98.91  E-value=2.4e-09  Score=107.48  Aligned_cols=109  Identities=13%  Similarity=0.188  Sum_probs=81.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..|...  |++|++||+++...+...+                   .+....+++++.++.||+
T Consensus       165 ktvGIIG~G~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~~-------------------~g~~~~~~l~ell~~aDv  223 (351)
T 3jtm_A          165 KTIGTVGAGRIGKLLLQRLKPF--GCNLLYHDRLQMAPELEKE-------------------TGAKFVEDLNEMLPKCDV  223 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGG--CCEEEEECSSCCCHHHHHH-------------------HCCEECSCHHHHGGGCSE
T ss_pred             CEEeEEEeCHHHHHHHHHHHHC--CCEEEEeCCCccCHHHHHh-------------------CCCeEcCCHHHHHhcCCE
Confidence            6899999999999999999887  9999999997543333221                   023455788999999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|......+     ..+        ++..+.++++.++|+.|..++-..+.+.+.|++.
T Consensus       224 V~l~~Plt~~t~~-----li~--------~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  273 (351)
T 3jtm_A          224 IVINMPLTEKTRG-----MFN--------KELIGKLKKGVLIVNNARGAIMERQAVVDAVESG  273 (351)
T ss_dssp             EEECSCCCTTTTT-----CBS--------HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             EEECCCCCHHHHH-----hhc--------HHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhC
Confidence            9999985322110     111        3455668999999999988877778888888764

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=98.91  E-value=3.8e-09  Score=104.62  Aligned_cols=107  Identities=18%  Similarity=0.176  Sum_probs=79.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||.++|..+...  |++|++||++++.......                    +... .++++.++.||+
T Consensus       143 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~~~~~~--------------------g~~~-~~l~ell~~aDv  199 (313)
T 2ekl_A          143 KTIGIVGFGRIGTKVGIIANAM--GMKVLAYDILDIREKAEKI--------------------NAKA-VSLEELLKNSDV  199 (313)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT--TCEEEEECSSCCHHHHHHT--------------------TCEE-CCHHHHHHHCSE
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCCcchhHHHhc--------------------Ccee-cCHHHHHhhCCE
Confidence            6899999999999999999987  9999999998765432111                    1233 378888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|......+     ..+        +...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus       200 Vvl~~P~~~~t~~-----li~--------~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g  249 (313)
T 2ekl_A          200 ISLHVTVSKDAKP-----IID--------YPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKG  249 (313)
T ss_dssp             EEECCCCCTTSCC-----SBC--------HHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTT
T ss_pred             EEEeccCChHHHH-----hhC--------HHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcC
Confidence            9999986432110     111        2345668899999999987777777788888764

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=98.89  E-value=1.1e-08  Score=102.43  Aligned_cols=107  Identities=11%  Similarity=0.135  Sum_probs=80.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|||||+|.||..+|..+...  |++|++||+++...+...                     +.+..+++++.+++||+
T Consensus       174 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~~---------------------g~~~~~~l~ell~~sDv  230 (345)
T 4g2n_A          174 RRLGIFGMGRIGRAIATRARGF--GLAIHYHNRTRLSHALEE---------------------GAIYHDTLDSLLGASDI  230 (345)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTT--TCEEEEECSSCCCHHHHT---------------------TCEECSSHHHHHHTCSE
T ss_pred             CEEEEEEeChhHHHHHHHHHHC--CCEEEEECCCCcchhhhc---------------------CCeEeCCHHHHHhhCCE
Confidence            5899999999999999999876  999999999753222111                     23455688998999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|......+     ..+        ++..+.++++.++|+.|..++-..+.|.+.|++.
T Consensus       231 V~l~~Plt~~T~~-----li~--------~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  280 (345)
T 4g2n_A          231 FLIAAPGRPELKG-----FLD--------HDRIAKIPEGAVVINISRGDLINDDALIEALRSK  280 (345)
T ss_dssp             EEECSCCCGGGTT-----CBC--------HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             EEEecCCCHHHHH-----HhC--------HHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhC
Confidence            9999985322110     111        3455678999999999988777777788888764

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=98.89  E-value=1.3e-08  Score=100.41  Aligned_cols=107  Identities=21%  Similarity=0.218  Sum_probs=78.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||.++|..+...  |++|++||++++. +...+.                   +... .+++++++.||+
T Consensus       143 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~-~~~~~~-------------------g~~~-~~l~ell~~aDv  199 (307)
T 1wwk_A          143 KTIGIIGFGRIGYQVAKIANAL--GMNILLYDPYPNE-ERAKEV-------------------NGKF-VDLETLLKESDV  199 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCH-HHHHHT-------------------TCEE-CCHHHHHHHCSE
T ss_pred             ceEEEEccCHHHHHHHHHHHHC--CCEEEEECCCCCh-hhHhhc-------------------Cccc-cCHHHHHhhCCE
Confidence            5899999999999999999987  9999999998765 222211                   1233 367888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|......+     ..+        +...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus       200 V~l~~p~~~~t~~-----li~--------~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g  249 (307)
T 1wwk_A          200 VTIHVPLVESTYH-----LIN--------EERLKLMKKTAILINTSRGPVVDTNALVKALKEG  249 (307)
T ss_dssp             EEECCCCSTTTTT-----CBC--------HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             EEEecCCChHHhh-----hcC--------HHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhC
Confidence            9999985432100     111        2345668999999999987776677788878764

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=98.87  E-value=1.8e-08  Score=100.13  Aligned_cols=117  Identities=24%  Similarity=0.334  Sum_probs=79.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|||+|.||.++|..|+.+  |+  +|+++|+++++++.+...        +..........++.. ++. +++++|
T Consensus         1 mkI~VIGaG~~G~~la~~l~~~--g~~~~V~l~D~~~~~~~~~~~~--------l~~~~~~~~~~~i~~-~d~-~~~~~a   68 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALLMK--GFAREMVLIDVDKKRAEGDALD--------LIHGTPFTRRANIYA-GDY-ADLKGS   68 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHH--------HHHHGGGSCCCEEEE-CCG-GGGTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEeCChHHHHHHHHH--------HHhhhhhcCCcEEEe-CCH-HHhCCC
Confidence            7999999999999999999998  88  999999999888765421        000000001123554 464 458999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      |+||+|+|++....    ....|     ...++++++.+.++. ++.++++ .|.|.++...
T Consensus        69 DvViiav~~~~~~g----~~r~dl~~~n~~i~~~i~~~i~~~~-~~~~ii~-~tNp~~~~~~  124 (319)
T 1a5z_A           69 DVVIVAAGVPQKPG----ETRLQLLGRNARVMKEIARNVSKYA-PDSIVIV-VTNPVDVLTY  124 (319)
T ss_dssp             SEEEECCCCCCCSS----CCHHHHHHHHHHHHHHHHHHHHHHC-TTCEEEE-CSSSHHHHHH
T ss_pred             CEEEEccCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEE-eCCcHHHHHH
Confidence            99999999875321    00222     234677888888886 4555554 4778776543

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=98.86  E-value=7.9e-09  Score=103.17  Aligned_cols=103  Identities=15%  Similarity=0.152  Sum_probs=65.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |++|++||++++.      .                  .......++++++++||+
T Consensus       172 ktiGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~------~------------------~~~~~~~sl~ell~~aDv  225 (340)
T 4dgs_A          172 KRIGVLGLGQIGRALASRAEAF--GMSVRYWNRSTLS------G------------------VDWIAHQSPVDLARDSDV  225 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSCCT------T------------------SCCEECSSHHHHHHTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCccc------c------------------cCceecCCHHHHHhcCCE
Confidence            6899999999999999999877  9999999997542      0                  113445788999999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|....           +   +..+ ++..+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus       226 Vil~vP~t~~-----------t---~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g  275 (340)
T 4dgs_A          226 LAVCVAASAA-----------T---QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSG  275 (340)
T ss_dssp             EEECC------------------------CHHHHHHTTTTCEEEECSCC--------------C
T ss_pred             EEEeCCCCHH-----------H---HHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcC
Confidence            9999984321           1   2222 4566778999999999887776666677777653

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=98.85  E-value=4.5e-09  Score=104.34  Aligned_cols=107  Identities=13%  Similarity=0.166  Sum_probs=79.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |++|++||++++..+.+                     .......++++.+++||+
T Consensus       138 ktvGIiGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~---------------------~~~~~~~~l~ell~~aDv  194 (324)
T 3evt_A          138 QQLLIYGTGQIGQSLAAKASAL--GMHVIGVNTTGHPADHF---------------------HETVAFTATADALATANF  194 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSCCCCTTC---------------------SEEEEGGGCHHHHHHCSE
T ss_pred             CeEEEECcCHHHHHHHHHHHhC--CCEEEEECCCcchhHhH---------------------hhccccCCHHHHHhhCCE
Confidence            5899999999999999999987  99999999975422110                     012233567888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|......+     ..        -++....++++.++|+.|+.++-..+.|.+.|++.
T Consensus       195 V~l~lPlt~~t~~-----li--------~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  244 (324)
T 3evt_A          195 IVNALPLTPTTHH-----LF--------STELFQQTKQQPMLINIGRGPAVDTTALMTALDHH  244 (324)
T ss_dssp             EEECCCCCGGGTT-----CB--------SHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             EEEcCCCchHHHH-----hc--------CHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhC
Confidence            9999985322110     11        13456678999999999998888888888888764

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=98.83  E-value=1.7e-08  Score=106.96  Aligned_cols=106  Identities=18%  Similarity=0.161  Sum_probs=79.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||.++|..|...  |++|++||++++. +...+                   .++..+ +++++++.||+
T Consensus       143 ~~vgIIG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~-~~a~~-------------------~g~~~~-~l~e~~~~aDv  199 (529)
T 1ygy_A          143 KTVGVVGLGRIGQLVAQRIAAF--GAYVVAYDPYVSP-ARAAQ-------------------LGIELL-SLDDLLARADF  199 (529)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCH-HHHHH-------------------HTCEEC-CHHHHHHHCSE
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC--CCEEEEECCCCCh-hHHHh-------------------cCcEEc-CHHHHHhcCCE
Confidence            6899999999999999999987  9999999997643 21111                   013333 78888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHH-HHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAAR-MIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~-~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|.....              ...+. .+.+.+++++++++.++..+-..+.+.+.+++.
T Consensus       200 V~l~~P~~~~t--------------~~~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g  249 (529)
T 1ygy_A          200 ISVHLPKTPET--------------AGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGG  249 (529)
T ss_dssp             EEECCCCSTTT--------------TTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTS
T ss_pred             EEECCCCchHH--------------HHHhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcC
Confidence            99999864211              11222 356778999999999988887777788878763

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=98.83  E-value=3.1e-08  Score=98.20  Aligned_cols=117  Identities=25%  Similarity=0.304  Sum_probs=80.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHH--HH--HCCCCCCCCCChHHHHHhhcCCCEEEecCHHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIA--AW--NGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK   74 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~--~l--~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~   74 (480)
                      +|||+|||+|.||.++|..|+.+  |+  +|+++|+++++++  .+  ..+ .++..           ..+++.+++.+ 
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~--g~~~~V~l~d~~~~~~~~~~~~~~~~-~~~~~-----------~~~v~~~~~~~-   71 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQR--GIAREIVLEDIAKERVEAEVLDMQHG-SSFYP-----------TVSIDGSDDPE-   71 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSHHHHHHHHHHHHHT-GGGST-----------TCEEEEESCGG-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCChhHHHHHHHHHHhh-hhhcC-----------CeEEEeCCCHH-
Confidence            48999999999999999999998  88  9999999998776  22  222 11110           12455666764 


Q ss_pred             HhccCcEEEEeccCCCCcCCCCCCCC-----CChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHH
Q 011654           75 HVAEADIVFVSVNTPTKTQGLGAGKA-----ADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIE  138 (480)
Q Consensus        75 a~~~aDvVii~Vptp~~~~~~~~~~~-----~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~  138 (480)
                      +++++|+||+|+++|.....   + .     .+...++++++.+.++ .++++|+. .|.|.++...+.
T Consensus        72 ~~~~aD~Vii~v~~~~~~g~---~-r~~~~~~n~~~~~~~~~~i~~~-~~~~~vi~-~~Np~~~~~~~~  134 (319)
T 1lld_A           72 ICRDADMVVITAGPRQKPGQ---S-RLELVGATVNILKAIMPNLVKV-APNAIYML-ITNPVDIATHVA  134 (319)
T ss_dssp             GGTTCSEEEECCCCCCCTTC---C-HHHHHHHHHHHHHHHHHHHHHH-CTTSEEEE-CCSSHHHHHHHH
T ss_pred             HhCCCCEEEECCCCCCCCCC---C-HHHHHHHHHHHHHHHHHHHHHh-CCCceEEE-ecCchHHHHHHH
Confidence            58999999999987653200   0 1     1234455778888876 56666654 577877765543

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=98.82  E-value=2.9e-08  Score=99.49  Aligned_cols=108  Identities=13%  Similarity=0.111  Sum_probs=80.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..|...  |++|++||++++.... ..                   .+.....++++.++.||+
T Consensus       169 ~tvGIIG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~-~~-------------------~g~~~~~~l~ell~~aDv  226 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRAKAF--GFNVLFYDPYLSDGVE-RA-------------------LGLQRVSTLQDLLFHSDC  226 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCTTHH-HH-------------------HTCEECSSHHHHHHHCSE
T ss_pred             CEEEEEeECHHHHHHHHHHHHC--CCEEEEECCCcchhhH-hh-------------------cCCeecCCHHHHHhcCCE
Confidence            5899999999999999999877  9999999986542111 00                   023445678888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|......+     -.+        ++..+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus       227 V~l~~P~t~~t~~-----li~--------~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g  276 (347)
T 1mx3_A          227 VTLHCGLNEHNHH-----LIN--------DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG  276 (347)
T ss_dssp             EEECCCCCTTCTT-----SBS--------HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred             EEEcCCCCHHHHH-----HhH--------HHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhC
Confidence            9999986422110     111        3455678999999999999888888888888775

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=98.82  E-value=3.1e-08  Score=98.88  Aligned_cols=106  Identities=12%  Similarity=0.030  Sum_probs=79.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |++|++||++++.......                    +... .+++++++.||+
T Consensus       166 ~tvgIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~--------------------g~~~-~~l~ell~~aDv  222 (335)
T 2g76_A          166 KTLGILGLGRIGREVATRMQSF--GMKTIGYDPIISPEVSASF--------------------GVQQ-LPLEEIWPLCDF  222 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSSCHHHHHHT--------------------TCEE-CCHHHHGGGCSE
T ss_pred             CEEEEEeECHHHHHHHHHHHHC--CCEEEEECCCcchhhhhhc--------------------Ccee-CCHHHHHhcCCE
Confidence            5899999999999999999876  9999999998654221111                    1233 478888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|.....              +..+ +...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus       223 V~l~~P~t~~t--------------~~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g  272 (335)
T 2g76_A          223 ITVHTPLLPST--------------TGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSG  272 (335)
T ss_dssp             EEECCCCCTTT--------------TTSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred             EEEecCCCHHH--------------HHhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhC
Confidence            99999864321              1112 3456778999999999987776677788878764

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=98.81  E-value=3.7e-08  Score=99.13  Aligned_cols=107  Identities=14%  Similarity=0.154  Sum_probs=78.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|||||+|.||..+|..+...  |++|++||++.........                    +... .++++.++.||+
T Consensus       177 ktvGIIGlG~IG~~vA~~l~~f--G~~V~~~d~~~~~~~~~~~--------------------g~~~-~~l~ell~~aDv  233 (365)
T 4hy3_A          177 SEIGIVGFGDLGKALRRVLSGF--RARIRVFDPWLPRSMLEEN--------------------GVEP-ASLEDVLTKSDF  233 (365)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTS--CCEEEEECSSSCHHHHHHT--------------------TCEE-CCHHHHHHSCSE
T ss_pred             CEEEEecCCcccHHHHHhhhhC--CCEEEEECCCCCHHHHhhc--------------------Ceee-CCHHHHHhcCCE
Confidence            5899999999999999998776  9999999997532211111                    2333 478888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|.....           ..+.  -......++++.++|+.|..++-..+.|.+.|++.
T Consensus       234 V~l~~Plt~~T-----------~~li--~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  283 (365)
T 4hy3_A          234 IFVVAAVTSEN-----------KRFL--GAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSG  283 (365)
T ss_dssp             EEECSCSSCC--------------CC--CHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTT
T ss_pred             EEEcCcCCHHH-----------Hhhc--CHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcC
Confidence            99999854221           1111  13456778999999999988777777888888764

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=98.81  E-value=2.8e-08  Score=98.60  Aligned_cols=116  Identities=17%  Similarity=0.308  Sum_probs=80.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHH-hhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVT-QCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~-~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|||+|.||.++|..|+.+  |+ +|++||+++++++.....        +..... .....+++.++++ +++++|
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~--g~~~V~l~D~~~~~~~~~~~~--------l~~~~~~~~~~~~i~~t~d~-~a~~~a   73 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKD--NLADVVLFDIAEGIPQGKALD--------ITHSMVMFGSTSKVIGTDDY-ADISGS   73 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSHHHHHHHH--------HHHHHHHHTCCCCEEEESCG-GGGTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCchHHHHHHHH--------HHhhhhhcCCCcEEEECCCH-HHhCCC
Confidence            7999999999999999999998  88 999999998877754210        000000 0113467888888 678999


Q ss_pred             cEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           80 DIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      |+||+|++.|.....   .+    .-+...++++++.+.++.+ +.++++.| .|.+.
T Consensus        74 DiVi~avg~p~~~g~---~r~d~~~~~~~i~~~i~~~i~~~~~-~~iii~~s-Np~~~  126 (317)
T 2ewd_A           74 DVVIITASIPGRPKD---DRSELLFGNARILDSVAEGVKKYCP-NAFVICIT-NPLDV  126 (317)
T ss_dssp             SEEEECCCCSSCCSS---CGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEECC-SSHHH
T ss_pred             CEEEEeCCCCCCCCC---cHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEeC-ChHHH
Confidence            999999988764310   10    0123456788888888865 77666543 45444

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=98.81  E-value=2.4e-08  Score=99.12  Aligned_cols=115  Identities=17%  Similarity=0.321  Sum_probs=74.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHH----HHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAA----WNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~----l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a   75 (480)
                      |||+|||+|++|.++|..|+.+  |+  +|+++|+++++++.    +.... ++.             ...+++.+..++
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~~~--~~~~ev~L~Di~~~~~~g~~~dl~~~~-~~~-------------~~~~i~~~~~~a   71 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMALR--QTANELVLIDVFKEKAIGEAMDINHGL-PFM-------------GQMSLYAGDYSD   71 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCSSEEEEECCC---CCHHHHHHTTSC-CCT-------------TCEEEC--CGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCChHHHHHHHHHHHHhH-Hhc-------------CCeEEEECCHHH
Confidence            6899999999999999999987  66  99999999876443    22221 110             123333233456


Q ss_pred             hccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHH
Q 011654           76 VAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAI  137 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l  137 (480)
                      +++||+||+++++|....   .++    ..+.+.++++.+.+.++. ++.+|++ .|+|+++...+
T Consensus        72 ~~~aDvVii~~g~p~k~g---~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv-~tNPv~~~~~~  132 (318)
T 1y6j_A           72 VKDCDVIVVTAGANRKPG---ETRLDLAKKNVMIAKEVTQNIMKYY-NHGVILV-VSNPVDIITYM  132 (318)
T ss_dssp             GTTCSEEEECCCC---------CHHHHHHHHHHHHHHHHHHHHHHC-CSCEEEE-CSSSHHHHHHH
T ss_pred             hCCCCEEEEcCCCCCCCC---cCHHHHHHhhHHHHHHHHHHHHHhC-CCcEEEE-ecCcHHHHHHH
Confidence            999999999999886431   000    223445678888888885 5666666 58999886554

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=98.80  E-value=1.4e-08  Score=103.59  Aligned_cols=105  Identities=14%  Similarity=0.154  Sum_probs=78.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|||||+|.||..+|..+...  |++|++||+++..         .              .+......+++++++.||+
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~--G~~V~~yd~~~~~---------~--------------~~~~~~~~sl~ell~~aDv  211 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESL--GMTVRYYDTSDKL---------Q--------------YGNVKPAASLDELLKTSDV  211 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECTTCCC---------C--------------BTTBEECSSHHHHHHHCSE
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCcchh---------c--------------ccCcEecCCHHHHHhhCCE
Confidence            5899999999999999999887  9999999986320         0              0123455788999999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|......+     ..+        +.....++++.++|+.|+.++-..+.+.+.|++.
T Consensus       212 V~lhvPlt~~T~~-----li~--------~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g  261 (416)
T 3k5p_A          212 VSLHVPSSKSTSK-----LIT--------EAKLRKMKKGAFLINNARGSDVDLEALAKVLQEG  261 (416)
T ss_dssp             EEECCCC-----C-----CBC--------HHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred             EEEeCCCCHHHhh-----hcC--------HHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcC
Confidence            9999986322100     111        3455668999999999998887788888888764

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=98.80  E-value=3.4e-09  Score=105.18  Aligned_cols=107  Identities=13%  Similarity=0.116  Sum_probs=78.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|||||+|.||.++|..|...  |++|++||++++..+.+                     .......++++++++||+
T Consensus       141 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~~---------------------~~~~~~~~l~ell~~aDv  197 (324)
T 3hg7_A          141 RTLLILGTGSIGQHIAHTGKHF--GMKVLGVSRSGRERAGF---------------------DQVYQLPALNKMLAQADV  197 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCCCTTC---------------------SEEECGGGHHHHHHTCSE
T ss_pred             ceEEEEEECHHHHHHHHHHHhC--CCEEEEEcCChHHhhhh---------------------hcccccCCHHHHHhhCCE
Confidence            5899999999999999999887  99999999975211100                     111224578888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|......+     ..+        ++....++++.++|+.|+.++-..+.|.+.|++.
T Consensus       198 V~l~lPlt~~T~~-----li~--------~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  247 (324)
T 3hg7_A          198 IVSVLPATRETHH-----LFT--------ASRFEHCKPGAILFNVGRGNAINEGDLLTALRTG  247 (324)
T ss_dssp             EEECCCCCSSSTT-----SBC--------TTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             EEEeCCCCHHHHH-----HhH--------HHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcC
Confidence            9999985322110     111        2345668899999999998887788888888764

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=98.79  E-value=1.6e-08  Score=99.69  Aligned_cols=102  Identities=15%  Similarity=0.202  Sum_probs=77.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..|...  |++|++||++++  +.   +                    .....++++.++.||+
T Consensus       125 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~dr~~~--~~---~--------------------~~~~~~l~ell~~aDv  177 (303)
T 1qp8_A          125 EKVAVLGLGEIGTRVGKILAAL--GAQVRGFSRTPK--EG---P--------------------WRFTNSLEEALREARA  177 (303)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHT--TCEEEEECSSCC--CS---S--------------------SCCBSCSHHHHTTCSE
T ss_pred             CEEEEEccCHHHHHHHHHHHHC--CCEEEEECCCcc--cc---C--------------------cccCCCHHHHHhhCCE
Confidence            6899999999999999999987  999999999764  11   1                    0112466788899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|.....              +..+ +...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus       178 V~l~~P~~~~t--------------~~~i~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g  227 (303)
T 1qp8_A          178 AVCALPLNKHT--------------RGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKER  227 (303)
T ss_dssp             EEECCCCSTTT--------------TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred             EEEeCcCchHH--------------HHHhCHHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhC
Confidence            99999864321              1111 2466778999999999998777777788888764

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=98.79  E-value=1.5e-08  Score=100.91  Aligned_cols=108  Identities=10%  Similarity=0.080  Sum_probs=79.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |++|++||+++...+....                   .+... .+++++++.||+
T Consensus       146 ~tvGIIG~G~IG~~vA~~l~~~--G~~V~~~d~~~~~~~~~~~-------------------~g~~~-~~l~ell~~aDv  203 (330)
T 4e5n_A          146 ATVGFLGMGAIGLAMADRLQGW--GATLQYHEAKALDTQTEQR-------------------LGLRQ-VACSELFASSDF  203 (330)
T ss_dssp             CEEEEECCSHHHHHHHHHTTTS--CCEEEEECSSCCCHHHHHH-------------------HTEEE-CCHHHHHHHCSE
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCCCCcHhHHHh-------------------cCcee-CCHHHHHhhCCE
Confidence            5899999999999999999876  9999999998632222211                   02343 378888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|......+     ..        -++..+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus       204 V~l~~P~t~~t~~-----li--------~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g  253 (330)
T 4e5n_A          204 ILLALPLNADTLH-----LV--------NAELLALVRPGALLVNPCRGSVVDEAAVLAALERG  253 (330)
T ss_dssp             EEECCCCSTTTTT-----CB--------CHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             EEEcCCCCHHHHH-----Hh--------CHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhC
Confidence            9999985322110     11        13566778999999999988777778888888764

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.79  E-value=2.1e-08  Score=103.04  Aligned_cols=209  Identities=13%  Similarity=0.040  Sum_probs=115.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHc----CCCCeEEEEeCCHH-HHHHHH-CCCCCCCCCChHHHHHhhcCCCEEEecCHHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALK----CPKIEVAVVDISVS-RIAAWN-GDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK   74 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~----~~G~~V~~~D~~~~-~v~~l~-~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~   74 (480)
                      |+||+|||+|.||.++|..|.+.    +.|++|++.+++.+ ..+... .|....              ..  .+.++++
T Consensus        54 iKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~--------------d~--ta~s~aE  117 (525)
T 3fr7_A           54 IKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEE--------------SG--TLGDIWE  117 (525)
T ss_dssp             CSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTT--------------TT--CEEEHHH
T ss_pred             CCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEe--------------cC--CCCCHHH
Confidence            47999999999999999999875    23688886655432 222222 221000              00  1246788


Q ss_pred             HhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCcee-Ee
Q 011654           75 HVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQ-IL  153 (480)
Q Consensus        75 a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~-v~  153 (480)
                      ++++||+||++||..               ...+++++|.++++++++|++.+.+...   .+.+... .. ..+.. +.
T Consensus       118 Aa~~ADVVILaVP~~---------------~~~eVl~eI~p~LK~GaILs~AaGf~I~---~le~~~i-~~-p~dv~VVr  177 (525)
T 3fr7_A          118 TVSGSDLVLLLISDA---------------AQADNYEKIFSHMKPNSILGLSHGFLLG---HLQSAGL-DF-PKNISVIA  177 (525)
T ss_dssp             HHHHCSEEEECSCHH---------------HHHHHHHHHHHHSCTTCEEEESSSHHHH---HHHHTTC-CC-CTTSEEEE
T ss_pred             HHhcCCEEEECCChH---------------HHHHHHHHHHHhcCCCCeEEEeCCCCHH---HHhhhcc-cC-CCCCcEEE
Confidence            899999999999842               2345777899999999997664432221   1211000 11 12222 23


Q ss_pred             eCCcccccccccc-----c----cCCCCeEE-EEeCCCcchHHHHHHHHHHHhccCCCCeEEeCChhHHHHhhhH-H-hH
Q 011654          154 SNPEFLAEGTAIQ-----D----LFNPDRVL-IGGRETPEGQKAIQALKDVYAHWVPEDRIITTNLWSAELSKLA-A-NA  221 (480)
Q Consensus       154 ~~Pe~~~~G~a~~-----~----~~~~~~vv-iG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~~~~ae~~Kl~-~-N~  221 (480)
                      .+|.  .||..+.     .    ....+..+ +..+.   +.+..+.+..++..++. ..++.++...---..++ + ..
T Consensus       178 VmPN--tPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~---tgea~e~alala~aiG~-~~vieTtf~eE~e~DLfgeqtv  251 (525)
T 3fr7_A          178 VCPK--GMGPSVRRLYVQGKEINGAGINSSFAVHQDV---DGRATDVALGWSVALGS-PFTFATTLEQEYKSDIFGERGI  251 (525)
T ss_dssp             EEES--SCHHHHHHHHHHHTTSTTCSCCEEEEEEECS---SSCHHHHHHHHHHHTTC-SEEEECCHHHHHHHHHHHHHTT
T ss_pred             EecC--CCchhHHHHHhcccccccCCccEEEEcCCCC---CHHHHHHHHHHHHHCCC-CeeeeeeeeeehhHhhhhhHhh
Confidence            3453  2332210     0    11223233 22221   35678899999999874 33433443211111111 1 11


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Q 011654          222 FLAQRISSVNAMSALCEATGADVTQVSHAI  251 (480)
Q Consensus       222 ~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~  251 (480)
                      +.....+++.-+.....+.|++++..+...
T Consensus       252 LsG~~pAlieA~~d~lVe~G~~pe~Ay~~~  281 (525)
T 3fr7_A          252 LLGAVHGIVEALFRRYTEQGMDEEMAYKNT  281 (525)
T ss_dssp             TTHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            223334566666677777899988776654

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=98.79  E-value=1.2e-08  Score=103.72  Aligned_cols=108  Identities=14%  Similarity=0.146  Sum_probs=79.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |++|++||+++...+...+                   .++....++++.++.||+
T Consensus       192 ktvGIIGlG~IG~~vA~~l~a~--G~~V~~~d~~~~~~~~~~~-------------------~G~~~~~~l~ell~~aDv  250 (393)
T 2nac_A          192 MHVGTVAAGRIGLAVLRRLAPF--DVHLHYTDRHRLPESVEKE-------------------LNLTWHATREDMYPVCDV  250 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGG--TCEEEEECSSCCCHHHHHH-------------------HTCEECSSHHHHGGGCSE
T ss_pred             CEEEEEeECHHHHHHHHHHHhC--CCEEEEEcCCccchhhHhh-------------------cCceecCCHHHHHhcCCE
Confidence            6899999999999999999877  9999999997543322221                   023444678888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|.....              +..+ +...+.++++.++|+.|+..+-..+.+.+.|++.
T Consensus       251 V~l~~Plt~~t--------------~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g  300 (393)
T 2nac_A          251 VTLNCPLHPET--------------EHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESG  300 (393)
T ss_dssp             EEECSCCCTTT--------------TTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             EEEecCCchHH--------------HHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHcC
Confidence            99999853221              1112 3455778999999999987776777788888764

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=98.78  E-value=6.7e-08  Score=94.63  Aligned_cols=118  Identities=19%  Similarity=0.223  Sum_probs=78.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~~~   78 (480)
                      |||+|||+|.||.++|..|+.+  |+  +|.+||+++++++.....        +....... ...+++.++| .+++++
T Consensus         1 MkI~ViGaG~vG~~la~~l~~~--~~~~~v~L~D~~~~~~~g~~~d--------l~~~~~~~~~~~~i~~t~d-~~a~~~   69 (294)
T 1oju_A            1 MKLGFVGAGRVGSTSAFTCLLN--LDVDEIALVDIAEDLAVGEAMD--------LAHAAAGIDKYPKIVGGAD-YSLLKG   69 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--SCCSEEEEECSSHHHHHHHHHH--------HHHHHHTTTCCCEEEEESC-GGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEECChHHHHHHHHH--------HHhhhhhcCCCCEEEEeCC-HHHhCC
Confidence            8999999999999999999988  77  999999999887632210        00000000 1235777888 667999


Q ss_pred             CcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      ||+||++.+.|..+.   .++    ..+.+.+++..+.+.++. ++.++++- |.|..+.-
T Consensus        70 aDiVViaag~~~kpG---~~R~dl~~~N~~i~~~i~~~i~~~~-p~a~iivv-sNPvd~~t  125 (294)
T 1oju_A           70 SEIIVVTAGLARKPG---MTRLDLAHKNAGIIKDIAKKIVENA-PESKILVV-TNPMDVMT  125 (294)
T ss_dssp             CSEEEECCCCCCCSS---CCHHHHHHHHHHHHHHHHHHHHTTS-TTCEEEEC-SSSHHHHH
T ss_pred             CCEEEECCCCCCCCC---CcHHHHHHHHHHHHHHHHHHHHhhC-CCeEEEEe-CCcchHHH
Confidence            999999999876431   010    113345566677788775 45555544 46776543

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=98.78  E-value=2.4e-08  Score=100.86  Aligned_cols=109  Identities=21%  Similarity=0.190  Sum_probs=81.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIE-VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|+|||+|.||..+|..|...  |++ |++||+++...+...+                   .+.....++++.++.||
T Consensus       165 ~tvgIIG~G~IG~~vA~~l~~~--G~~~V~~~d~~~~~~~~~~~-------------------~g~~~~~~l~ell~~aD  223 (364)
T 2j6i_A          165 KTIATIGAGRIGYRVLERLVPF--NPKELLYYDYQALPKDAEEK-------------------VGARRVENIEELVAQAD  223 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGG--CCSEEEEECSSCCCHHHHHH-------------------TTEEECSSHHHHHHTCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCcEEEEECCCccchhHHHh-------------------cCcEecCCHHHHHhcCC
Confidence            5899999999999999999877  897 9999987644333222                   12445567888889999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      +|++|+|......+     ..+        +...+.++++.++|+.|+.++-..+.|.+.|++.
T Consensus       224 vV~l~~P~t~~t~~-----li~--------~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g  274 (364)
T 2j6i_A          224 IVTVNAPLHAGTKG-----LIN--------KELLSKFKKGAWLVNTARGAICVAEDVAAALESG  274 (364)
T ss_dssp             EEEECCCCSTTTTT-----CBC--------HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             EEEECCCCChHHHH-----HhC--------HHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcC
Confidence            99999986422100     111        3455778999999999988777777788888764

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=98.77  E-value=3e-08  Score=97.77  Aligned_cols=116  Identities=18%  Similarity=0.330  Sum_probs=73.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCC---CCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGD---QLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~---~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      |||+|||+|.||.++|..|+.+  |+  +|+++|+++++++.....   ..++.           ...+++. ++. +++
T Consensus         1 mkI~VIGaG~vG~~la~~la~~--g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~-----------~~~~i~~-~~~-~a~   65 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALVLR--GSCSELVLVDRDEDRAQAEAEDIAHAAPVS-----------HGTRVWH-GGH-SEL   65 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSSHHHHHHHHHHHTTSCCTT-----------SCCEEEE-ECG-GGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCCHHHHHHHHHhhhhhhhhc-----------CCeEEEE-CCH-HHh
Confidence            7999999999999999999998  88  999999999876643221   11110           0123443 455 468


Q ss_pred             ccCcEEEEeccCCCCcCCCC-CCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           77 AEADIVFVSVNTPTKTQGLG-AGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~-~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      ++||+||+|++.|....... +.-..+...++++++.+.++. ++.++++ .|.|.++.
T Consensus        66 ~~aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~-p~~~vi~-~tNP~~~~  122 (304)
T 2v6b_A           66 ADAQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAA-PDAVLLV-TSNPVDLL  122 (304)
T ss_dssp             TTCSEEEECC------------CHHHHHHHHHHHHHHHHHHC-SSSEEEE-CSSSHHHH
T ss_pred             CCCCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhC-CCeEEEE-ecCchHHH
Confidence            99999999998775321000 000124456678888888885 6666665 56777653

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=98.77  E-value=3.2e-08  Score=101.14  Aligned_cols=105  Identities=16%  Similarity=0.127  Sum_probs=79.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|||||+|.||..+|..+...  |++|++||+++..     .                  .+......++++.++.||+
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~-----~------------------~~~~~~~~~l~ell~~aDv  200 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESL--GMYVYFYDIENKL-----P------------------LGNATQVQHLSDLLNMSDV  200 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCC-----C------------------CTTCEECSCHHHHHHHCSE
T ss_pred             CEEEEEeECHHHHHHHHHHHHC--CCEEEEEcCCchh-----c------------------cCCceecCCHHHHHhcCCE
Confidence            5899999999999999999887  9999999986421     0                  0224455688898999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|......+     -.+        +.....++++.++|+.|+..+-..+.+.+.|++.
T Consensus       201 V~l~~P~t~~t~~-----li~--------~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g  250 (404)
T 1sc6_A          201 VSLHVPENPSTKN-----MMG--------AKEISLMKPGSLLINASRGTVVDIPALADALASK  250 (404)
T ss_dssp             EEECCCSSTTTTT-----CBC--------HHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTT
T ss_pred             EEEccCCChHHHH-----Hhh--------HHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcC
Confidence            9999986432110     111        2345678999999999998877777888888764

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=98.74  E-value=5.2e-08  Score=97.38  Aligned_cols=105  Identities=16%  Similarity=0.232  Sum_probs=79.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |++|++||++++.  ...                    ....+. ++++++++||+
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~--~~~--------------------~~~~~~-~l~ell~~aDv  203 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAM--GAKVIAYDVAYNP--EFE--------------------PFLTYT-DFDTVLKEADI  203 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCG--GGT--------------------TTCEEC-CHHHHHHHCSE
T ss_pred             CeEEEEecCHHHHHHHHHHhhC--CCEEEEECCChhh--hhh--------------------cccccc-CHHHHHhcCCE
Confidence            5899999999999999999987  9999999998643  111                    113333 78888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|......+     ..+        +.....++++.++|+.|+.++-..+.|.+.|++.
T Consensus       204 V~l~~Plt~~t~~-----li~--------~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g  253 (343)
T 2yq5_A          204 VSLHTPLFPSTEN-----MIG--------EKQLKEMKKSAYLINCARGELVDTGALIKALQDG  253 (343)
T ss_dssp             EEECCCCCTTTTT-----CBC--------HHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             EEEcCCCCHHHHH-----Hhh--------HHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcC
Confidence            9999985322111     111        2345668999999999998887788888888764

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=98.72  E-value=9.7e-08  Score=94.75  Aligned_cols=120  Identities=21%  Similarity=0.277  Sum_probs=79.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~   78 (480)
                      +|||+|||+|.||.++|..|+.+  |+ +|+++|+++++++....        ++...... ....++++++|+ +++++
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~--~~~~v~L~Di~~~~~~g~~~--------dl~~~~~~~~~~~~v~~t~d~-~a~~~   75 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLK--ELGDVVLFDIAEGTPQGKGL--------DIAESSPVDGFDAKFTGANDY-AAIEG   75 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSHHHHHHH--------HHHHHHHHHTCCCCEEEESSG-GGGTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeCCchhHHHHHH--------HHhchhhhcCCCCEEEEeCCH-HHHCC
Confidence            37999999999999999999988  77 99999999987753321        01111000 013457778888 57999


Q ss_pred             CcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      ||+||++.+.|....   .++    ..+...+++..+.+.++.+ +.++++- |.|..+.-.
T Consensus        76 aDiVIiaag~p~k~G---~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~iivv-tNPvd~~t~  132 (324)
T 3gvi_A           76 ADVVIVTAGVPRKPG---MSRDDLLGINLKVMEQVGAGIKKYAP-EAFVICI-TNPLDAMVW  132 (324)
T ss_dssp             CSEEEECCSCCCC--------CHHHHHHHHHHHHHHHHHHHHCT-TCEEEEC-CSSHHHHHH
T ss_pred             CCEEEEccCcCCCCC---CCHHHHHHhhHHHHHHHHHHHHHHCC-CeEEEec-CCCcHHHHH
Confidence            999999999886541   110    1134556677778888874 5555443 467665433

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=98.71  E-value=1e-07  Score=94.53  Aligned_cols=121  Identities=17%  Similarity=0.219  Sum_probs=79.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|++|.++|..|+.+....+|.++|+++++++.....        +.... ......++++.+..+++++||+
T Consensus         7 ~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~d--------l~~~~-~~~~~~~~v~~~~~~a~~~aDv   77 (317)
T 3d0o_A            7 NKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMD--------LKHAT-PYSPTTVRVKAGEYSDCHDADL   77 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHH--------HHHHG-GGSSSCCEEEECCGGGGTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhh--------HHhhh-hhcCCCeEEEeCCHHHhCCCCE
Confidence            59999999999999999999872125899999999876642210        11100 0111123333344667999999


Q ss_pred             EEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      ||++++.|....   .++    ..+...++++.+.+.++. ++.+|++ .|.|.++.-.
T Consensus        78 Vvi~ag~~~~~g---~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~viv-~tNPv~~~t~  131 (317)
T 3d0o_A           78 VVICAGAAQKPG---ETRLDLVSKNLKIFKSIVGEVMASK-FDGIFLV-ATNPVDILAY  131 (317)
T ss_dssp             EEECCCCCCCTT---CCHHHHHHHHHHHHHHHHHHHHHTT-CCSEEEE-CSSSHHHHHH
T ss_pred             EEECCCCCCCCC---CcHHHHHHHHHHHHHHHHHHHHHhC-CCcEEEE-ecCcHHHHHH
Confidence            999999886431   000    123456777778888885 5666666 6789887544

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=98.70  E-value=6.4e-08  Score=96.12  Aligned_cols=112  Identities=20%  Similarity=0.272  Sum_probs=77.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHH----HHCCCCCCCCCChHHHHHhhcCCCEE-EecCHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAA----WNGDQLPIYEPGLEDVVTQCRGRNLF-FSTDIEK   74 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~----l~~~~~~~~e~~l~~l~~~~~~~~l~-~t~d~~~   74 (480)
                      |||+|||+|+||.++|..|+.+  |+  +|+++|+++++++.    |+.+ .++..            .+++ .++++ +
T Consensus         6 ~kI~ViGaG~vG~~~a~~l~~~--~~~~~l~l~D~~~~k~~g~a~DL~~~-~~~~~------------~~v~i~~~~~-~   69 (326)
T 3pqe_A            6 NKVALIGAGFVGSSYAFALINQ--GITDELVVIDVNKEKAMGDVMDLNHG-KAFAP------------QPVKTSYGTY-E   69 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHHT-GGGSS------------SCCEEEEECG-G
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCceEEEEecchHHHHHHHHHHHhc-ccccc------------CCeEEEeCcH-H
Confidence            7999999999999999999988  65  99999999998776    5543 33221            1223 24455 4


Q ss_pred             HhccCcEEEEeccCCCCcCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           75 HVAEADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        75 a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      ++++||+||+++++|..+..   + +.     +.+.+++..+.+.++.+ +.++++ -|.|..+.-
T Consensus        70 a~~~aDvVvi~ag~p~kpG~---~-R~dL~~~N~~Iv~~i~~~I~~~~p-~a~vlv-vtNPvd~~t  129 (326)
T 3pqe_A           70 DCKDADIVCICAGANQKPGE---T-RLELVEKNLKIFKGIVSEVMASGF-DGIFLV-ATNPVDILT  129 (326)
T ss_dssp             GGTTCSEEEECCSCCCCTTC---C-HHHHHHHHHHHHHHHHHHHHHTTC-CSEEEE-CSSSHHHHH
T ss_pred             HhCCCCEEEEecccCCCCCc---c-HHHHHHHHHHHHHHHHHHHHHhcC-CeEEEE-cCChHHHHH
Confidence            69999999999998865410   1 22     23455667777777765 455544 356766543

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=98.68  E-value=6.7e-09  Score=102.79  Aligned_cols=107  Identities=9%  Similarity=0.106  Sum_probs=78.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |++|++||++++..+.            +.         ......++++.+++||+
T Consensus       140 ~tvGIiG~G~IG~~vA~~l~~~--G~~V~~~dr~~~~~~~------------~~---------~~~~~~~l~ell~~aDi  196 (315)
T 3pp8_A          140 FSVGIMGAGVLGAKVAESLQAW--GFPLRCWSRSRKSWPG------------VE---------SYVGREELRAFLNQTRV  196 (315)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT--TCCEEEEESSCCCCTT------------CE---------EEESHHHHHHHHHTCSE
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEcCCchhhhh------------hh---------hhcccCCHHHHHhhCCE
Confidence            6899999999999999999877  9999999997542110            00         01112467888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|......+     ..        -++....++++.++|+.|..+.-..+.|.+.|++.
T Consensus       197 V~l~~Plt~~t~~-----li--------~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g  246 (315)
T 3pp8_A          197 LINLLPNTAQTVG-----II--------NSELLDQLPDGAYVLNLARGVHVQEADLLAALDSG  246 (315)
T ss_dssp             EEECCCCCGGGTT-----CB--------SHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             EEEecCCchhhhh-----hc--------cHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhC
Confidence            9999984322110     11        13456778999999999988877778888888764

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.68  E-value=1.5e-08  Score=100.28  Aligned_cols=106  Identities=10%  Similarity=0.140  Sum_probs=78.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|+|||+|.||..++..|++.. |+ +|++||+++++.+.+.+..                ..++..+++++++++++|
T Consensus       136 ~~igiIG~G~~g~~~a~~l~~~~-g~~~V~v~dr~~~~~~~l~~~~----------------~~~~~~~~~~~e~v~~aD  198 (312)
T 2i99_A          136 EVLCILGAGVQAYSHYEIFTEQF-SFKEVRIWNRTKENAEKFADTV----------------QGEVRVCSSVQEAVAGAD  198 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC-CCSEEEEECSSHHHHHHHHHHS----------------SSCCEECSSHHHHHTTCS
T ss_pred             cEEEEECCcHHHHHHHHHHHHhC-CCcEEEEEcCCHHHHHHHHHHh----------------hCCeEEeCCHHHHHhcCC
Confidence            68999999999999999998752 44 8999999999988876420                002556788988899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      +|++|+|... .                ++..  +.++++++|++.|+..|.. +++.+.+.+.
T Consensus       199 iVi~atp~~~-~----------------v~~~--~~l~~g~~vi~~g~~~p~~-~el~~~~~~~  242 (312)
T 2i99_A          199 VIITVTLATE-P----------------ILFG--EWVKPGAHINAVGASRPDW-RELDDELMKE  242 (312)
T ss_dssp             EEEECCCCSS-C----------------CBCG--GGSCTTCEEEECCCCSTTC-CSBCHHHHHH
T ss_pred             EEEEEeCCCC-c----------------ccCH--HHcCCCcEEEeCCCCCCCc-eeccHHHHhc
Confidence            9999987421 1                1111  4678899999888888776 4444444443

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=98.67  E-value=7.3e-08  Score=95.26  Aligned_cols=99  Identities=15%  Similarity=0.153  Sum_probs=75.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |++|++||++++..+                         .. ..++++.++.||+
T Consensus       145 ~~vgIIG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~~-------------------------~~-~~~l~ell~~aDv  196 (311)
T 2cuk_A          145 LTLGLVGMGRIGQAVAKRALAF--GMRVVYHARTPKPLP-------------------------YP-FLSLEELLKEADV  196 (311)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSSS-------------------------SC-BCCHHHHHHHCSE
T ss_pred             CEEEEEEECHHHHHHHHHHHHC--CCEEEEECCCCcccc-------------------------cc-cCCHHHHHhhCCE
Confidence            5899999999999999999987  999999999754221                         00 2467778899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecCCccchHHHHHHHHH
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKSTVPVKTAEAIEKILT  142 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~  142 (480)
                      |++|+|.....              +..+ +...+.++++.++|+.|+..+-..+.+.+.|+
T Consensus       197 V~l~~p~~~~t--------------~~li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~  244 (311)
T 2cuk_A          197 VSLHTPLTPET--------------HRLLNRERLFAMKRGAILLNTARGALVDTEALVEALR  244 (311)
T ss_dssp             EEECCCCCTTT--------------TTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT
T ss_pred             EEEeCCCChHH--------------HhhcCHHHHhhCCCCcEEEECCCCCccCHHHHHHHHh
Confidence            99999864221              1111 23456789999999999877766777877777

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=98.67  E-value=1.3e-07  Score=81.11  Aligned_cols=125  Identities=15%  Similarity=0.236  Sum_probs=76.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC-CCCCCCCChHHHHHhhcCCCEEEecCH---HH-Hh
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD-QLPIYEPGLEDVVTQCRGRNLFFSTDI---EK-HV   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~~t~d~---~~-a~   76 (480)
                      |+|.|+|+|.+|..+|..|.+.  |++|+++|+++++++.+.+. .......+               .++.   .+ .+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~--g~~v~~~d~~~~~~~~~~~~~~~~~~~~d---------------~~~~~~l~~~~~   67 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASAEIDALVINGD---------------CTKIKTLEDAGI   67 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCSSEEEESC---------------TTSHHHHHHTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHHhcCcEEEEcC---------------CCCHHHHHHcCc
Confidence            7999999999999999999998  89999999999998887642 11100000               0111   11 25


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCC
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNP  156 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~P  156 (480)
                      .++|+||+|+|.+.               ....+..+.+.++++.+|+.  +..++..+    .+++.+    +..+.+|
T Consensus        68 ~~~d~vi~~~~~~~---------------~~~~~~~~~~~~~~~~ii~~--~~~~~~~~----~l~~~g----~~~v~~p  122 (140)
T 1lss_A           68 EDADMYIAVTGKEE---------------VNLMSSLLAKSYGINKTIAR--ISEIEYKD----VFERLG----VDVVVSP  122 (140)
T ss_dssp             TTCSEEEECCSCHH---------------HHHHHHHHHHHTTCCCEEEE--CSSTTHHH----HHHHTT----CSEEECH
T ss_pred             ccCCEEEEeeCCch---------------HHHHHHHHHHHcCCCEEEEE--ecCHhHHH----HHHHcC----CCEEECH
Confidence            68999999987421               11223344555666676653  23344433    334432    2345778


Q ss_pred             cccccccccccc
Q 011654          157 EFLAEGTAIQDL  168 (480)
Q Consensus       157 e~~~~G~a~~~~  168 (480)
                      ++...+.....+
T Consensus       123 ~~~~~~~~~~~~  134 (140)
T 1lss_A          123 ELIAANYIEKLI  134 (140)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            776655444333

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=98.66  E-value=1.1e-07  Score=94.36  Aligned_cols=120  Identities=16%  Similarity=0.171  Sum_probs=81.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      +|||+|||+|.||.++|..|+.+  |+  +|+++|+++++++.....        +..........++..++|+++ +++
T Consensus        21 ~~kV~ViGaG~vG~~~a~~la~~--g~~~ev~L~Di~~~~~~g~a~D--------L~~~~~~~~~~~i~~t~d~~~-~~d   89 (330)
T 3ldh_A           21 YNKITVVGCDAVGMADAISVLMK--DLADEVALVDVMEDKLKGEMMD--------LEHGSLFLHTAKIVSGKDYSV-SAG   89 (330)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHHH--CCCSEEEEECSCHHHHHHHHHH--------HHHHGGGSCCSEEEEESSSCS-CSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEECCHHHHHHHHHH--------hhhhhhcccCCeEEEcCCHHH-hCC
Confidence            37999999999999999999988  65  999999999877654321        000000001235777889876 999


Q ss_pred             CcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      ||+||++.+.|..+.   .++    .-+.+.+++..+.+.++. ++.++++- |.|..+.-.
T Consensus        90 aDiVIitaG~p~kpG---~tR~dll~~N~~I~k~i~~~I~k~~-P~a~ilvv-tNPvdi~t~  146 (330)
T 3ldh_A           90 SKLVVITAGARQQEG---ESRLNLVQRNVNIFKFIIPNIVKHS-PDCLKELH-PELGTDKNK  146 (330)
T ss_dssp             CSEEEECCSCCCCSS---CCTTGGGHHHHHHHHHHHHHHHHHC-TTCEEEEC-SSSHHHHHH
T ss_pred             CCEEEEeCCCCCCCC---CCHHHHHHhhHHHHHHHHHHHHhhC-CCceEEeC-CCccHHHHH
Confidence            999999999886541   111    123455677778888885 45555443 467665433

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=98.61  E-value=4.9e-07  Score=89.34  Aligned_cols=118  Identities=26%  Similarity=0.340  Sum_probs=78.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCC--HHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHhc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDIS--VSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~--~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~~   77 (480)
                      +||+|||+|.||.++|..|+.+  |+ +|+++|++  +++.+.....        +.+..... ...+++.+++++ +++
T Consensus         9 ~kv~ViGaG~vG~~ia~~l~~~--g~~~v~l~D~~~~~~~~~g~a~d--------l~~~~~~~~~~~~i~~t~d~~-a~~   77 (315)
T 3tl2_A            9 KKVSVIGAGFTGATTAFLLAQK--ELADVVLVDIPQLENPTKGKALD--------MLEASPVQGFDANIIGTSDYA-DTA   77 (315)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCCEEEEECCGGGHHHHHHHHHH--------HHHHHHHHTCCCCEEEESCGG-GGT
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCeEEEEeccchHHHHHHhhhh--------HHHhhhhccCCCEEEEcCCHH-HhC
Confidence            5899999999999999999998  88 99999999  6665544311        11110001 234677788865 599


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      +||+||++.++|..+.   .+ +.     +...+++..+.+.++.+ +.++++- |.|..+.-.
T Consensus        78 ~aDvVIiaag~p~kpg---~~-R~dl~~~N~~i~~~i~~~i~~~~p-~a~vlvv-sNPvd~~t~  135 (315)
T 3tl2_A           78 DSDVVVITAGIARKPG---MS-RDDLVATNSKIMKSITRDIAKHSP-NAIIVVL-TNPVDAMTY  135 (315)
T ss_dssp             TCSEEEECCSCCCCTT---CC-HHHHHHHHHHHHHHHHHHHHHHCT-TCEEEEC-CSSHHHHHH
T ss_pred             CCCEEEEeCCCCCCCC---CC-HHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEC-CChHHHHHH
Confidence            9999999999886541   11 12     23345667777778764 4555443 456665433

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=98.60  E-value=5.8e-08  Score=96.94  Aligned_cols=106  Identities=14%  Similarity=0.185  Sum_probs=78.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |++|++||+++++.  +.+.                    ..+.+++++.++.||+
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~--~~~~--------------------~~~~~~l~ell~~aDv  202 (333)
T 1j4a_A          147 QVVGVVGTGHIGQVFMQIMEGF--GAKVITYDIFRNPE--LEKK--------------------GYYVDSLDDLYKQADV  202 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCHH--HHHT--------------------TCBCSCHHHHHHHCSE
T ss_pred             CEEEEEccCHHHHHHHHHHHHC--CCEEEEECCCcchh--HHhh--------------------CeecCCHHHHHhhCCE
Confidence            5899999999999999999987  99999999987643  1211                    1123467788899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|......+     -.+        +...+.++++.++|+.|+..+-..+.+.+.|++.
T Consensus       203 V~l~~p~~~~t~~-----li~--------~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g  252 (333)
T 1j4a_A          203 ISLHVPDVPANVH-----MIN--------DESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG  252 (333)
T ss_dssp             EEECSCCCGGGTT-----CBS--------HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             EEEcCCCcHHHHH-----HHh--------HHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence            9999985422100     111        2345668899999999988777778888888764

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=98.59  E-value=3.6e-07  Score=91.25  Aligned_cols=117  Identities=19%  Similarity=0.219  Sum_probs=77.6

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH----HHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAA----WNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~----l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      |||+|||+ |++|.++|..++..+...+|+++|+++++++.    |+.+.  +            ...++++++++.+++
T Consensus         9 ~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~--~------------~~~~i~~t~d~~~al   74 (343)
T 3fi9_A            9 EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCG--F------------EGLNLTFTSDIKEAL   74 (343)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHC--C------------TTCCCEEESCHHHHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCc--C------------CCCceEEcCCHHHHh
Confidence            69999998 99999999999987222589999999987765    33321  1            113577889998889


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHH
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAI  137 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l  137 (480)
                      ++||+||+|..+|....    ..+.|     ...+++..+.+.++.++..+|++ -|.|..+.-.+
T Consensus        75 ~dADvVvitaG~p~kpG----~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlv-vsNPvd~~t~i  135 (343)
T 3fi9_A           75 TDAKYIVSSGGAPRKEG----MTREDLLKGNAEIAAQLGKDIKSYCPDCKHVII-IFNPADITGLV  135 (343)
T ss_dssp             TTEEEEEECCC-----------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEE-CSSSHHHHHHH
T ss_pred             CCCCEEEEccCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEE-ecCchHHHHHH
Confidence            99999999998876431    01222     34456666777777765542333 35677665443

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=98.59  E-value=4e-07  Score=90.27  Aligned_cols=120  Identities=21%  Similarity=0.280  Sum_probs=80.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~   78 (480)
                      +|||+|||+|.||.++|..|+.+  |+ +|+++|+++++++.....        +.+.... ....+++.++++ +++++
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~--~~~~v~l~Di~~~~~~g~a~d--------L~~~~~~~~~~~~v~~t~d~-~a~~~   73 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIK--QLGDVVLFDIAQGMPNGKALD--------LLQTCPIEGVDFKVRGTNDY-KDLEN   73 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSSSSHHHHHHHH--------HHTTHHHHTCCCCEEEESCG-GGGTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCceEEEEeCChHHHHHHHHH--------HHhhhhhcCCCcEEEEcCCH-HHHCC
Confidence            37999999999999999999987  66 999999999876533210        0000000 012356667786 56999


Q ss_pred             CcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      ||+||++.+.|....   .++    ..+...+++..+.+.++.+ +.++++- |.|.++.-.
T Consensus        74 aDvVIi~ag~p~k~G---~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~vivv-tNPvd~~t~  130 (321)
T 3p7m_A           74 SDVVIVTAGVPRKPG---MSRDDLLGINIKVMQTVGEGIKHNCP-NAFVICI-TNPLDIMVN  130 (321)
T ss_dssp             CSEEEECCSCCCCTT---CCHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEEC-CSSHHHHHH
T ss_pred             CCEEEEcCCcCCCCC---CCHHHHHHHhHHHHHHHHHHHHHHCC-CcEEEEe-cCchHHHHH
Confidence            999999998876431   110    1134556777788888874 5555543 677776443

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=98.57  E-value=3.7e-07  Score=90.37  Aligned_cols=113  Identities=17%  Similarity=0.225  Sum_probs=80.3

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHH--HHHCCCCCCCCCChHHHHHhhcCCCEEE---ecCHH
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPK--IEVAVVDISVSRIA--AWNGDQLPIYEPGLEDVVTQCRGRNLFF---STDIE   73 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~--~l~~~~~~~~e~~l~~l~~~~~~~~l~~---t~d~~   73 (480)
                      |||+|||+ |++|.+++..|+..  |  ++|.++|+++....  .+....               ...+++.   ++|++
T Consensus         1 mKI~IiGa~G~VG~~la~~L~~~--~~~~ev~L~Di~~~~~~a~dL~~~~---------------~~~~l~~~~~t~d~~   63 (314)
T 1mld_A            1 AKVAVLGASGGIGQPLSLLLKNS--PLVSRLTLYDIAHTPGVAADLSHIE---------------TRATVKGYLGPEQLP   63 (314)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTC--TTCSEEEEEESSSHHHHHHHHTTSS---------------SSCEEEEEESGGGHH
T ss_pred             CEEEEECCCChHHHHHHHHHHhC--CCCcEEEEEeCCccHHHHHHHhccC---------------cCceEEEecCCCCHH
Confidence            79999998 99999999999987  6  79999999872221  222211               0124565   36788


Q ss_pred             HHhccCcEEEEeccCCCCcCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCCEEEEecCCccchHHHH
Q 011654           74 KHVAEADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIANVSNSNKIVVEKSTVPVKTAEAI  137 (480)
Q Consensus        74 ~a~~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l  137 (480)
                      +++++||+||++.+.|....    ....|+     ..++++.+.+.++.+. .++++ .|.|.++.-.+
T Consensus        64 ~a~~~aDvVvi~ag~~~~~g----~~r~dl~~~n~~i~~~i~~~i~~~~p~-a~viv-~sNPv~~~~~i  126 (314)
T 1mld_A           64 DCLKGCDVVVIPAGVPRKPG----MTRDDLFNTNATIVATLTAACAQHCPD-AMICI-ISNPVNSTIPI  126 (314)
T ss_dssp             HHHTTCSEEEECCSCCCCTT----CCGGGGHHHHHHHHHHHHHHHHHHCTT-SEEEE-CSSCHHHHHHH
T ss_pred             HHhCCCCEEEECCCcCCCCC----CcHHHHHHHHHHHHHHHHHHHHhhCCC-eEEEE-ECCCcchhHHH
Confidence            88999999999998876431    113455     6778888888888754 44544 47888876543

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=98.55  E-value=8e-08  Score=95.88  Aligned_cols=105  Identities=12%  Similarity=0.144  Sum_probs=78.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |++|++||++++..  + .                   ....+ .++++.++.||+
T Consensus       146 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~--~-~-------------------~~~~~-~~l~ell~~aDv  200 (333)
T 1dxy_A          146 QTVGVMGTGHIGQVAIKLFKGF--GAKVIAYDPYPMKG--D-H-------------------PDFDY-VSLEDLFKQSDV  200 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSS--C-C-------------------TTCEE-CCHHHHHHHCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCcchh--h-H-------------------hcccc-CCHHHHHhcCCE
Confidence            5899999999999999999987  99999999975421  0 0                   01223 378888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|......+     ..+        +...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus       201 V~~~~P~~~~t~~-----li~--------~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g  250 (333)
T 1dxy_A          201 IDLHVPGIEQNTH-----IIN--------EAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSG  250 (333)
T ss_dssp             EEECCCCCGGGTT-----SBC--------HHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred             EEEcCCCchhHHH-----HhC--------HHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence            9999986432110     111        3345678999999999998777778888888764

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=98.54  E-value=1.1e-07  Score=96.03  Aligned_cols=108  Identities=15%  Similarity=0.118  Sum_probs=77.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|||||+|.||..+|..+...  |++|++||+..+..+   .+                    . ...++++++++||+
T Consensus       120 ktvGIIGlG~IG~~vA~~l~a~--G~~V~~~d~~~~~~~---~~--------------------~-~~~sl~ell~~aDi  173 (381)
T 3oet_A          120 RTIGIVGVGNVGSRLQTRLEAL--GIRTLLCDPPRAARG---DE--------------------G-DFRTLDELVQEADV  173 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECHHHHHTT---CC--------------------S-CBCCHHHHHHHCSE
T ss_pred             CEEEEEeECHHHHHHHHHHHHC--CCEEEEECCChHHhc---cC--------------------c-ccCCHHHHHhhCCE
Confidence            5899999999999999999987  999999997543211   00                    1 13578888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|.....      ..+ +..+.  -++....++++.++|+.|+.++-..+.|.+.|++.
T Consensus       174 V~l~~Plt~~g------~~~-T~~li--~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g  227 (381)
T 3oet_A          174 LTFHTPLYKDG------PYK-TLHLA--DETLIRRLKPGAILINACRGPVVDNAALLARLNAG  227 (381)
T ss_dssp             EEECCCCCCSS------TTC-CTTSB--CHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             EEEcCcCCccc------ccc-chhhc--CHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence            99999854320      000 01111  12455668999999999998887788888888764

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=98.52  E-value=1.4e-07  Score=95.34  Aligned_cols=108  Identities=19%  Similarity=0.163  Sum_probs=78.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|||||+|.||..+|..|...  |++|++||++++..   ..+                    .. ..++++.+++||+
T Consensus       117 ~tvGIIGlG~IG~~vA~~l~~~--G~~V~~~d~~~~~~---~~g--------------------~~-~~~l~ell~~aDv  170 (380)
T 2o4c_A          117 RTYGVVGAGQVGGRLVEVLRGL--GWKVLVCDPPRQAR---EPD--------------------GE-FVSLERLLAEADV  170 (380)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECHHHHHH---STT--------------------SC-CCCHHHHHHHCSE
T ss_pred             CEEEEEeCCHHHHHHHHHHHHC--CCEEEEEcCChhhh---ccC--------------------cc-cCCHHHHHHhCCE
Confidence            5899999999999999999987  99999999866432   111                    01 2467888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|.....      ..+ +..+.  -+...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus       171 V~l~~Plt~~g------~~~-T~~li--~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g  224 (380)
T 2o4c_A          171 ISLHTPLNRDG------EHP-TRHLL--DEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGG  224 (380)
T ss_dssp             EEECCCCCSSS------SSC-CTTSB--CHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             EEEeccCcccc------ccc-hhhhc--CHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhC
Confidence            99999864320      000 11111  13456778999999999998877778888888764

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=98.52  E-value=1.1e-07  Score=94.97  Aligned_cols=105  Identities=11%  Similarity=0.115  Sum_probs=77.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |++|++||++++..  + +                   ....+ .++++.++.||+
T Consensus       147 ~~vgIiG~G~IG~~~A~~l~~~--G~~V~~~d~~~~~~--~-~-------------------~~~~~-~~l~ell~~aDv  201 (331)
T 1xdw_A          147 CTVGVVGLGRIGRVAAQIFHGM--GATVIGEDVFEIKG--I-E-------------------DYCTQ-VSLDEVLEKSDI  201 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCCS--C-T-------------------TTCEE-CCHHHHHHHCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCEEEEECCCccHH--H-H-------------------hcccc-CCHHHHHhhCCE
Confidence            5899999999999999999887  99999999875421  1 0                   01222 378888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++|+|......+     ..+        +...+.++++.++|+.|+.++-..+.+.+.|++.
T Consensus       202 V~~~~p~t~~t~~-----li~--------~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g  251 (331)
T 1xdw_A          202 ITIHAPYIKENGA-----VVT--------RDFLKKMKDGAILVNCARGQLVDTEAVIEAVESG  251 (331)
T ss_dssp             EEECCCCCTTTCC-----SBC--------HHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             EEEecCCchHHHH-----HhC--------HHHHhhCCCCcEEEECCCcccccHHHHHHHHHhC
Confidence            9999985422110     111        2445668999999999988777778888888764

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=98.52  E-value=4.5e-07  Score=90.19  Aligned_cols=113  Identities=19%  Similarity=0.247  Sum_probs=77.7

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCC--CeEEEEeCCHHH--HHHHHCCCCCCCCCChHHHHHhhcCCCEEE---ecCH
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPK--IEVAVVDISVSR--IAAWNGDQLPIYEPGLEDVVTQCRGRNLFF---STDI   72 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G--~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~---t~d~   72 (480)
                      .|||+||| +|++|.+++..|+.+  |  ++|+++|++++.  ...+.....               ...++.   ++|+
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~~~--g~~~ev~l~Di~~~~~~~~dL~~~~~---------------~~~v~~~~~t~d~   70 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMKMN--PLVSVLHLYDVVNAPGVTADISHMDT---------------GAVVRGFLGQQQL   70 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHHHC--TTEEEEEEEESSSHHHHHHHHHTSCS---------------SCEEEEEESHHHH
T ss_pred             CCEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEeCCCcHhHHHHhhcccc---------------cceEEEEeCCCCH
Confidence            37999999 899999999999987  6  899999998762  222332110               113444   4577


Q ss_pred             HHHhccCcEEEEeccCCCCcCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           73 EKHVAEADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      +++++++|+||+|.+.|....    ....|+     ..++++++.+.++.+ +.+|++ +|+|.+++-.
T Consensus        71 ~~al~gaDvVi~~ag~~~~~g----~~r~dl~~~N~~~~~~i~~~i~~~~p-~~~viv-~SNPv~~~~~  133 (326)
T 1smk_A           71 EAALTGMDLIIVPAGVPRKPG----MTRDDLFKINAGIVKTLCEGIAKCCP-RAIVNL-ISNPVNSTVP  133 (326)
T ss_dssp             HHHHTTCSEEEECCCCCCCSS----CCCSHHHHHHHHHHHHHHHHHHHHCT-TSEEEE-CCSSHHHHHH
T ss_pred             HHHcCCCCEEEEcCCcCCCCC----CCHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEE-ECCchHHHHH
Confidence            888999999999998875431    112333     556666777777664 455554 6889887543

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=98.51  E-value=4.3e-07  Score=89.67  Aligned_cols=119  Identities=16%  Similarity=0.229  Sum_probs=73.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~~~   78 (480)
                      |||+|||+|.||.++|..|+.+  |.  +|+++|+++++++....        ++....... ...++..++++ +++++
T Consensus         1 Mkv~ViGaG~vG~~~a~~l~~~--~~~~el~l~D~~~~k~~g~a~--------DL~~~~~~~~~~~~v~~~~~~-~a~~~   69 (314)
T 3nep_X            1 MKVTVIGAGNVGATVAECVARQ--DVAKEVVMVDIKDGMPQGKAL--------DMRESSPIHGFDTRVTGTNDY-GPTED   69 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCSSEEEEECSSTTHHHHHHH--------HHHHHHHHHTCCCEEEEESSS-GGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCCEEEEEeCchHHHHHHHH--------HHhccccccCCCcEEEECCCH-HHhCC
Confidence            8999999999999999999987  55  99999999987654321        111111000 11234445554 56999


Q ss_pred             CcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      ||+||+|.+.|..+.   .++    ..+...+++..+.+.++.+ +.++++ -|.|..+.-.
T Consensus        70 aDvVii~ag~~~kpG---~~R~dl~~~N~~i~~~i~~~i~~~~p-~a~viv-vtNPvd~~t~  126 (314)
T 3nep_X           70 SDVCIITAGLPRSPG---MSRDDLLAKNTEIVGGVTEQFVEGSP-DSTIIV-VANPLDVMTY  126 (314)
T ss_dssp             CSEEEECCCC----------CHHHHHHHHHHHHHHHHHHHTTCT-TCEEEE-CCSSHHHHHH
T ss_pred             CCEEEECCCCCCCCC---CCHHHHHHhhHHHHHHHHHHHHHhCC-CcEEEe-cCCchhHHHH
Confidence            999999999876431   111    1133445666677777754 455544 3567766444

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=98.51  E-value=5.9e-07  Score=93.45  Aligned_cols=79  Identities=20%  Similarity=0.189  Sum_probs=58.3

Q ss_pred             cEEEEEcCChhH--HHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGYVG--GPTMAVIALK--CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~G--~~lA~~La~~--~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~   76 (480)
                      |||+|||+|.||  .++|..|+..  .+|++|++||+++++++.++..        ...++.. ....++++++|+++++
T Consensus         4 ~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~--------~~~~l~~~~~~~~I~~ttD~~eal   75 (480)
T 1obb_A            4 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI--------AKKYVEEVGADLKFEKTMNLDDVI   75 (480)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH--------HHHHHHHTTCCCEEEEESCHHHHH
T ss_pred             CEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHH--------HHHHhccCCCCcEEEEECCHHHHh
Confidence            699999999975  5556677742  2378999999999998876532        1222211 1234688899998889


Q ss_pred             ccCcEEEEeccC
Q 011654           77 AEADIVFVSVNT   88 (480)
Q Consensus        77 ~~aDvVii~Vpt   88 (480)
                      ++||+||+++|.
T Consensus        76 ~dAD~VIiaagv   87 (480)
T 1obb_A           76 IDADFVINTAMV   87 (480)
T ss_dssp             TTCSEEEECCCT
T ss_pred             CCCCEEEECCCc
Confidence            999999999975

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=98.48  E-value=9.5e-07  Score=87.50  Aligned_cols=116  Identities=21%  Similarity=0.256  Sum_probs=74.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~~~   78 (480)
                      |||+|||+|.+|.+++..|+.+  +.  ++.++|+++++++.....           +.... ....++++.+..+++++
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~--~~~~el~L~Di~~~~~~g~~~d-----------l~~~~~~~~~~~v~~~~~~a~~~   72 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQ--GIAEEFVIVDVVKDRTKGDALD-----------LEDAQAFTAPKKIYSGEYSDCKD   72 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSSHHHHHHHHHH-----------HHGGGGGSCCCEEEECCGGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHcC--CCCCEEEEEeCCchHHHHHHHH-----------HHHHHHhcCCeEEEECCHHHhCC
Confidence            6999999999999999999987  54  899999999887653221           10000 00233444444567999


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      ||+||++.+.|... +  .+ ..|+     ..+++..+.+.++.+ +.++++ -|.|.++...
T Consensus        73 aDvVii~ag~~~~~-g--~~-R~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv-~tNPv~~~t~  129 (318)
T 1ez4_A           73 ADLVVITAGAPQKP-G--ES-RLDLVNKNLNILSSIVKPVVDSGF-DGIFLV-AANPVDILTY  129 (318)
T ss_dssp             CSEEEECCCC--------------CHHHHHHHHHHHHHHHHHTTC-CSEEEE-CSSSHHHHHH
T ss_pred             CCEEEECCCCCCCC-C--CC-HHHHHHHHHHHHHHHHHHHHHhCC-CeEEEE-eCCcHHHHHH
Confidence            99999999887543 1  11 2233     566777778888764 555555 3788877544

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=98.48  E-value=4.4e-07  Score=85.92  Aligned_cols=97  Identities=12%  Similarity=0.208  Sum_probs=68.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEV-AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~a   79 (480)
                      |||+|||+|.||..++..|.+.  |++| .+||+++ +.     .                   .  ..+|+++.+ .++
T Consensus         1 m~vgiIG~G~mG~~~~~~l~~~--g~~lv~v~d~~~-~~-----~-------------------~--~~~~~~~l~~~~~   51 (236)
T 2dc1_A            1 MLVGLIGYGAIGKFLAEWLERN--GFEIAAILDVRG-EH-----E-------------------K--MVRGIDEFLQREM   51 (236)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEECSSC-CC-----T-------------------T--EESSHHHHTTSCC
T ss_pred             CEEEEECCCHHHHHHHHHHhcC--CCEEEEEEecCc-ch-----h-------------------h--hcCCHHHHhcCCC
Confidence            7999999999999999999865  8997 6899863 11     0                   1  457788877 689


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH---HHHHHHHHhcC
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA---EAIEKILTHNS  145 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~---~~l~~~l~~~~  145 (480)
                      |+|++|+|+..                  ..+.+...++.|..|+++||..+...   +++.+..++.+
T Consensus        52 DvVv~~~~~~~------------------~~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g  102 (236)
T 2dc1_A           52 DVAVEAASQQA------------------VKDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTG  102 (236)
T ss_dssp             SEEEECSCHHH------------------HHHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHC
T ss_pred             CEEEECCCHHH------------------HHHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcC
Confidence            99999987421                  12222344567888999888654433   56666665543

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=98.47  E-value=1.4e-06  Score=86.18  Aligned_cols=119  Identities=16%  Similarity=0.186  Sum_probs=76.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh--hcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ--CRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~--~~~~~l~~t~d~~~a~~~   78 (480)
                      +|||+|||+|.||.++|..|+.+....+|+++|+++++.+....+           +...  ......+.+++..+++++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~d-----------l~~~~~~~~~~~~i~~~~~~al~~   74 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMD-----------FNHGKVFAPKPVDIWHGDYDDCRD   74 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH-----------HHHHTTSSSSCCEEEECCGGGTTT
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhh-----------HHHHhhhcCCCeEEEcCcHHHhCC
Confidence            379999999999999999998872234899999999866543221           1111  011123333444566999


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      ||+||+|.|.|....   .. ..|     .+.+++.++.+.++.+ +.++++ -|.|.+..-.
T Consensus        75 aDvViia~~~~~~~g---~~-r~dl~~~n~~i~~~i~~~i~~~~p-~a~~iv-~tNPv~~~~~  131 (316)
T 1ldn_A           75 ADLVVICAGANQKPG---ET-RLDLVDKNIAIFRSIVESVMASGF-QGLFLV-ATNPVDILTY  131 (316)
T ss_dssp             CSEEEECCSCCCCTT---TC-SGGGHHHHHHHHHHHHHHHHHHTC-CSEEEE-CSSSHHHHHH
T ss_pred             CCEEEEcCCCCCCCC---CC-HHHHHHcChHHHHHHHHHHHHHCC-CCEEEE-eCCchHHHHH
Confidence            999999998876431   11 122     2555667777777764 555544 4677776544

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=98.44  E-value=8.3e-07  Score=92.34  Aligned_cols=81  Identities=15%  Similarity=0.185  Sum_probs=59.7

Q ss_pred             cEEEEEcCChh-HHHHHHHHHHc--C-CCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGYV-GGPTMAVIALK--C-PKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~-G~~lA~~La~~--~-~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~   76 (480)
                      |||+|||+|.+ |.++|..|+.+  . ++++|++||+++++++.++.-        .+.++.. ....++++++|+++++
T Consensus        29 ~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~--------~~~~l~~~~~~~~I~~t~D~~eal  100 (472)
T 1u8x_X           29 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGA--------CDVFIREKAPDIEFAATTDPEEAF  100 (472)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHH--------HHHHHHHHCTTSEEEEESCHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHH--------HHHHhccCCCCCEEEEECCHHHHH
Confidence            39999999999 66677777765  2 267999999999998876531        0112111 1234688889998889


Q ss_pred             ccCcEEEEeccCCC
Q 011654           77 AEADIVFVSVNTPT   90 (480)
Q Consensus        77 ~~aDvVii~Vptp~   90 (480)
                      ++||+||+++|++.
T Consensus       101 ~~AD~VViaag~~~  114 (472)
T 1u8x_X          101 TDVDFVMAHIRVGK  114 (472)
T ss_dssp             SSCSEEEECCCTTH
T ss_pred             cCCCEEEEcCCCcc
Confidence            99999999998753

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=98.44  E-value=1.9e-06  Score=85.08  Aligned_cols=117  Identities=18%  Similarity=0.265  Sum_probs=77.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC---CCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD---QLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~---~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      |||+|||+|++|.+++..|+.+....++.++|+++++++.....   ..++           ...-+++. ++ .+++++
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~-----------~~~~~v~~-~~-~~a~~~   67 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPF-----------AHPVWVWA-GS-YGDLEG   67 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGG-----------SCCCEEEE-CC-GGGGTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhh-----------cCCeEEEE-CC-HHHhCC
Confidence            79999999999999999999873336899999999877643211   0010           00112333 34 556999


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHH
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAI  137 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l  137 (480)
                      ||+||++.+.|... +  . ...|     ...+++..+.+.++.+ +.++++- |.|.++.-.+
T Consensus        68 aD~Vii~ag~~~~~-g--~-~r~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv~-tNPv~~~t~~  125 (310)
T 2xxj_A           68 ARAVVLAAGVAQRP-G--E-TRLQLLDRNAQVFAQVVPRVLEAAP-EAVLLVA-TNPVDVMTQV  125 (310)
T ss_dssp             EEEEEECCCCCCCT-T--C-CHHHHHHHHHHHHHHHHHHHHHHCT-TCEEEEC-SSSHHHHHHH
T ss_pred             CCEEEECCCCCCCC-C--c-CHHHHHHhhHHHHHHHHHHHHHHCC-CcEEEEe-cCchHHHHHH
Confidence            99999999887643 1  0 0112     4556677777888855 4555553 7888875543

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=98.43  E-value=9.6e-07  Score=87.75  Aligned_cols=117  Identities=19%  Similarity=0.252  Sum_probs=77.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      .+||+|||+|.||.++|..|+.+  |.  +|+++|+++++++.....        +...........+..++|+++ +++
T Consensus        19 ~~kV~ViGaG~vG~~~a~~l~~~--~~~~el~L~Di~~~~~~g~a~D--------L~~~~~~~~~~~i~~~~d~~~-~~~   87 (331)
T 4aj2_A           19 QNKITVVGVGAVGMACAISILMK--DLADELALVDVIEDKLKGEMMD--------LQHGSLFLKTPKIVSSKDYSV-TAN   87 (331)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECSCHHHHHHHHHH--------HHHTGGGCSCCEEEECSSGGG-GTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCceEEEEeCChHHHHHHHHh--------hhhhhhccCCCeEEEcCCHHH-hCC
Confidence            37999999999999999999988  65  899999999877653321        000000000123556788874 999


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      ||+||++...|..+ |  .+ +.|     ...+++..+.+.++.+ +.++++ -|.|..+.
T Consensus        88 aDiVvi~aG~~~kp-G--~t-R~dL~~~N~~I~~~i~~~i~~~~p-~a~vlv-vtNPvdi~  142 (331)
T 4aj2_A           88 SKLVIITAGARQQE-G--ES-RLNLVQRNVNIFKFIIPNVVKYSP-QCKLLI-VSNPVDIL  142 (331)
T ss_dssp             EEEEEECCSCCCCT-T--CC-GGGGHHHHHHHHHHHHHHHHHHCT-TCEEEE-CSSSHHHH
T ss_pred             CCEEEEccCCCCCC-C--cc-HHHHHHHHHHHHHHHHHHHHHHCC-CeEEEE-ecChHHHH
Confidence            99999999887643 1  11 233     3445666677888754 455544 34676654

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=98.41  E-value=1.8e-06  Score=85.78  Aligned_cols=116  Identities=23%  Similarity=0.288  Sum_probs=75.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC---CCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD---QLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~---~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      |||+|||+|.+|.+++..|+.+...-++.++|+++++++.....   ..++             ...++++.+..+++++
T Consensus        10 ~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~-------------~~~~~i~~~~~~a~~~   76 (326)
T 2zqz_A           10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPF-------------TSPKKIYSAEYSDAKD   76 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGG-------------SCCCEEEECCGGGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHh-------------cCCeEEEECCHHHhCC
Confidence            79999999999999999998872123899999999877653221   0011             0233444444567999


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCCh-----HHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADL-----TYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~-----~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      ||+||++.+.|... +  . ...|+     ..+++..+.+.++.+ +.+|++ -|.|.++...
T Consensus        77 aDvVii~ag~~~k~-g--~-~R~dl~~~n~~i~~~i~~~i~~~~p-~a~iiv-~tNPv~~~t~  133 (326)
T 2zqz_A           77 ADLVVITAGAPQKP-G--E-TRLDLVNKNLKILKSIVDPIVDSGF-NGIFLV-AANPVDILTY  133 (326)
T ss_dssp             CSEEEECCCCC---------CHHHHHHHHHHHHHHHHHHHHHHTC-CSEEEE-CSSSHHHHHH
T ss_pred             CCEEEEcCCCCCCC-C--C-CHHHHHHHHHHHHHHHHHHHHHHCC-CeEEEE-eCCcHHHHHH
Confidence            99999999887543 0  0 01122     556677777888864 555555 3788887544

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=98.41  E-value=5.6e-07  Score=74.69  Aligned_cols=74  Identities=20%  Similarity=0.262  Sum_probs=53.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      +|+|.|+|+|.||..++..|.+.  | ++|+++|+++++.+.+.........            ..+.-..+..++++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~--g~~~v~~~~r~~~~~~~~~~~~~~~~~------------~d~~~~~~~~~~~~~~   70 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTS--SNYSVTVADHDLAALAVLNRMGVATKQ------------VDAKDEAGLAKALGGF   70 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHC--SSEEEEEEESCHHHHHHHHTTTCEEEE------------CCTTCHHHHHHHTTTC
T ss_pred             cCeEEEECCCHHHHHHHHHHHhC--CCceEEEEeCCHHHHHHHHhCCCcEEE------------ecCCCHHHHHHHHcCC
Confidence            36899999999999999999998  8 9999999999998887732111100            0010012344556789


Q ss_pred             cEEEEeccC
Q 011654           80 DIVFVSVNT   88 (480)
Q Consensus        80 DvVii~Vpt   88 (480)
                      |+||.|+|.
T Consensus        71 d~vi~~~~~   79 (118)
T 3ic5_A           71 DAVISAAPF   79 (118)
T ss_dssp             SEEEECSCG
T ss_pred             CEEEECCCc
Confidence            999999863

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=98.40  E-value=1.3e-06  Score=86.58  Aligned_cols=114  Identities=23%  Similarity=0.304  Sum_probs=72.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCC---CCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGD---QLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~---~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      |||+|||+|.||.++|..|+.+  |.  ++.++|+++++++.....   ..++            . ...+.+++..+++
T Consensus        10 ~kV~ViGaG~vG~~~a~~l~~~--~~~~el~l~D~~~~k~~g~a~DL~~~~~~------------~-~~~~i~~~~~~a~   74 (326)
T 3vku_A           10 QKVILVGDGAVGSSYAYAMVLQ--GIAQEIGIVDIFKDKTKGDAIDLEDALPF------------T-SPKKIYSAEYSDA   74 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECSCHHHHHHHHHHHHTTGGG------------S-CCCEEEECCGGGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCCCeEEEEeCChHHHHHHHhhHhhhhhh------------c-CCcEEEECcHHHh
Confidence            7999999999999999999987  65  899999999887744321   0111            0 1334444444569


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      ++||+||++.+.|..+.   .++    .-+...+++..+.+.++.+ +.++++- |.|..+.-
T Consensus        75 ~~aDiVvi~ag~~~kpG---~tR~dL~~~N~~I~~~i~~~i~~~~p-~a~ilvv-tNPvdi~t  132 (326)
T 3vku_A           75 KDADLVVITAGAPQKPG---ETRLDLVNKNLKILKSIVDPIVDSGF-NGIFLVA-ANPVDILT  132 (326)
T ss_dssp             TTCSEEEECCCCC-------------------CHHHHHHHHHTTTC-CSEEEEC-SSSHHHHH
T ss_pred             cCCCEEEECCCCCCCCC---chHHHHHHHHHHHHHHHHHHHHhcCC-ceEEEEc-cCchHHHH
Confidence            99999999998875431   111    1133446777778888765 4555443 56776543

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=98.40  E-value=2e-06  Score=84.79  Aligned_cols=118  Identities=21%  Similarity=0.243  Sum_probs=79.2

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHH-hhcCCCEEEecCHHHHhccCc
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVT-QCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~-~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ||+|||+|.||.++|..++.+  |+ +|.++|+++++++.....        +.+... ....-+++.++|+ +++++||
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~--~l~el~L~Di~~~~~~g~~~d--------l~~~~~~~~~~~~i~~t~d~-~a~~~aD   69 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMR--GYDDLLLIARTPGKPQGEALD--------LAHAAAELGVDIRISGSNSY-EDMRGSD   69 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH--TCSCEEEECSSTTHHHHHHHH--------HHHHHHHHTCCCCEEEESCG-GGGTTCS
T ss_pred             CEEEECcCHHHHHHHHHHHhC--CCCEEEEEcCChhhHHHHHHH--------HHHhhhhcCCCeEEEECCCH-HHhCCCC
Confidence            799999999999999999987  66 799999998877643211        111100 0113357777887 5699999


Q ss_pred             EEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      +||++.+.|... +  .++    .-+...+++.++.+.++. ++.++++- |.|.+....
T Consensus        70 ~Vi~~ag~~~k~-G--~~r~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv~-tNPv~~~t~  124 (308)
T 2d4a_B           70 IVLVTAGIGRKP-G--MTREQLLEANANTMADLAEKIKAYA-KDAIVVIT-TNPVDAMTY  124 (308)
T ss_dssp             EEEECCSCCCCS-S--CCTHHHHHHHHHHHHHHHHHHHHHC-TTCEEEEC-CSSHHHHHH
T ss_pred             EEEEeCCCCCCC-C--CcHHHHHHHHHHHHHHHHHHHHHHC-CCeEEEEe-CCchHHHHH
Confidence            999999887643 1  110    112344667777888886 45555553 678776544

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=98.40  E-value=1.2e-06  Score=87.10  Aligned_cols=70  Identities=21%  Similarity=0.238  Sum_probs=56.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--   77 (480)
                      |+||+|||+|.||..++..|.+. ++++++ ++|+++++.+.+.+.                  -++. .+|+++.++  
T Consensus         3 ~~~vgiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~~~------------------~~~~-~~~~~~~l~~~   62 (331)
T 4hkt_A            3 TVRFGLLGAGRIGKVHAKAVSGN-ADARLVAVADAFPAAAEAIAGA------------------YGCE-VRTIDAIEAAA   62 (331)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHH------------------TTCE-ECCHHHHHHCT
T ss_pred             ceEEEEECCCHHHHHHHHHHhhC-CCcEEEEEECCCHHHHHHHHHH------------------hCCC-cCCHHHHhcCC
Confidence            36999999999999999999875 578877 699999988877642                  1234 678888877  


Q ss_pred             cCcEEEEeccCCC
Q 011654           78 EADIVFVSVNTPT   90 (480)
Q Consensus        78 ~aDvVii~Vptp~   90 (480)
                      ++|+|++|+|+..
T Consensus        63 ~~D~V~i~tp~~~   75 (331)
T 4hkt_A           63 DIDAVVICTPTDT   75 (331)
T ss_dssp             TCCEEEECSCGGG
T ss_pred             CCCEEEEeCCchh
Confidence            7999999988643

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=98.40  E-value=8e-07  Score=86.21  Aligned_cols=93  Identities=11%  Similarity=0.134  Sum_probs=70.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||.++|..|++.  |++|+++|+++++.+.+.+..                  ++.+.+++.++++++|+
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~--g~~V~v~~r~~~~~~~l~~~~------------------g~~~~~~~~~~~~~aDi  189 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKE--GAKVFLWNRTKEKAIKLAQKF------------------PLEVVNSPEEVIDKVQV  189 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSHHHHHHHTTTS------------------CEEECSCGGGTGGGCSE
T ss_pred             CEEEEECchHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHc------------------CCeeehhHHhhhcCCCE
Confidence            6899999999999999999998  889999999999988876421                  24455577777889999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      ||.|+|.+...+      ...      .+.  ...++++++|++.++
T Consensus       190 Vi~atp~~~~~~------~~~------~i~--~~~l~~g~~viDv~~  222 (275)
T 2hk9_A          190 IVNTTSVGLKDE------DPE------IFN--YDLIKKDHVVVDIIY  222 (275)
T ss_dssp             EEECSSTTSSTT------CCC------SSC--GGGCCTTSEEEESSS
T ss_pred             EEEeCCCCCCCC------CCC------CCC--HHHcCCCCEEEEcCC
Confidence            999998754210      000      010  245778999988776

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=98.39  E-value=2.4e-06  Score=83.44  Aligned_cols=120  Identities=21%  Similarity=0.250  Sum_probs=76.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|.+|.++|..|+.+..--++.++|+++++.+.....        +....... ....+..++|+++ +++||
T Consensus         1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~D--------L~h~~~~~~~~~~i~~~~d~~~-~~~aD   71 (294)
T 2x0j_A            1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMD--------LAHAAAGIDKYPKIVGGADYSL-LKGSE   71 (294)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH--------HHHHHGGGTCCCEEEEESCGGG-GTTCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhh--------hhcccccCCCCCeEecCCCHHH-hCCCC
Confidence            89999999999999999998762234899999998765532210        11100001 1123566778765 99999


Q ss_pred             EEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      +|+++-..|..+.   .++    ..+.+.+++..+.+.++.+...+++  -|.|..+.-
T Consensus        72 vVvitAG~prkpG---mtR~dLl~~Na~I~~~i~~~i~~~~p~aivlv--vsNPvd~~t  125 (294)
T 2x0j_A           72 IIVVTAGLARKPG---MTRLDLAHKNAGIIKDIAKKIVENAPESKILV--VTNPMDVMT  125 (294)
T ss_dssp             EEEECCCCCCCSS---SCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEE--CSSSHHHHH
T ss_pred             EEEEecCCCCCCC---CchHHHHHHHHHHHHHHHHHHHhcCCceEEEE--ecCcchhhH
Confidence            9999998776541   111    1134455667777887766544333  366766543

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.38  E-value=3.1e-07  Score=79.96  Aligned_cols=70  Identities=14%  Similarity=0.310  Sum_probs=57.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..++..|...  |++|+++|+++++.+.+.+..                .......++..++++++|+
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~--g~~v~v~~r~~~~~~~~a~~~----------------~~~~~~~~~~~~~~~~~Di   83 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYP--QYKVTVAGRNIDHVRAFAEKY----------------EYEYVLINDIDSLIKNNDV   83 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTT--TCEEEEEESCHHHHHHHHHHH----------------TCEEEECSCHHHHHHTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHHHHh----------------CCceEeecCHHHHhcCCCE
Confidence            6899999999999999999886  889999999999988765420                1123456778888899999


Q ss_pred             EEEeccCC
Q 011654           82 VFVSVNTP   89 (480)
Q Consensus        82 Vii~Vptp   89 (480)
                      ||.|+|.+
T Consensus        84 vi~at~~~   91 (144)
T 3oj0_A           84 IITATSSK   91 (144)
T ss_dssp             EEECSCCS
T ss_pred             EEEeCCCC
Confidence            99998865

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=98.38  E-value=1.3e-06  Score=87.37  Aligned_cols=70  Identities=21%  Similarity=0.284  Sum_probs=57.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~   78 (480)
                      +||+|||+|.||..++..|.+. ++++++ ++|+++++.+.+.+..                  +....+|+++.++  +
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~~------------------g~~~~~~~~~~l~~~~   65 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAAN-PDLELVVIADPFIEGAQRLAEAN------------------GAEAVASPDEVFARDD   65 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHTT------------------TCEEESSHHHHTTCSC
T ss_pred             eEEEEECCcHHHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHHc------------------CCceeCCHHHHhcCCC
Confidence            6899999999999999999875 578877 7999999988776421                  2466789999887  8


Q ss_pred             CcEEEEeccCCC
Q 011654           79 ADIVFVSVNTPT   90 (480)
Q Consensus        79 aDvVii~Vptp~   90 (480)
                      +|+|++|+|+..
T Consensus        66 ~D~V~i~tp~~~   77 (344)
T 3euw_A           66 IDGIVIGSPTST   77 (344)
T ss_dssp             CCEEEECSCGGG
T ss_pred             CCEEEEeCCchh
Confidence            999999988643

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=98.37  E-value=2e-06  Score=84.48  Aligned_cols=111  Identities=19%  Similarity=0.302  Sum_probs=71.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCC--eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKI--EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~--~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      ++||+|||+|.||..+|..++.+  |+  +|+++|++++ .....           .++.. ....+++.++|+ +++++
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~~~--g~~~ev~L~Di~~~-~~g~a-----------~dl~~-~~~~~i~~t~d~-~~l~~   77 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAISAK--GIADRLVLLDLSEG-TKGAT-----------MDLEI-FNLPNVEISKDL-SASAH   77 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHH--TCCSEEEEECCC------CH-----------HHHHH-HTCTTEEEESCG-GGGTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhc--CCCCEEEEEcCCcc-hHHHH-----------HHHhh-hcCCCeEEeCCH-HHHCC
Confidence            47999999999999999999988  77  9999999985 21100           11111 122368888898 56999


Q ss_pred             CcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           79 ADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      ||+||+++..+ .+ +  .++    .-+...+++.++.+.++. ++.++++ -|.|...
T Consensus        78 aD~Vi~aag~~-~p-G--~tR~dl~~~n~~i~~~i~~~i~~~~-p~a~iiv-~sNP~~~  130 (303)
T 2i6t_A           78 SKVVIFTVNSL-GS-S--QSYLDVVQSNVDMFRALVPALGHYS-QHSVLLV-ASQPVEI  130 (303)
T ss_dssp             CSEEEECCCC--------CCHHHHHHHHHHHHHHHHHHHHHHT-TTCEEEE-CSSSHHH
T ss_pred             CCEEEEcCCCC-CC-C--CCHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEE-cCChHHH
Confidence            99999998654 11 0  000    113344567778888887 5666554 3456554

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=98.36  E-value=1.4e-06  Score=87.47  Aligned_cols=71  Identities=17%  Similarity=0.280  Sum_probs=57.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~   78 (480)
                      +||+|||+|.||..++..|.+..++++++ ++|+++++.+.+.+.                  -++...+|+++.++  +
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~------------------~~~~~~~~~~~ll~~~~   75 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER------------------TGARGHASLTDMLAQTD   75 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH------------------HCCEEESCHHHHHHHCC
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH------------------cCCceeCCHHHHhcCCC
Confidence            68999999999999999998753478865 789999998876642                  12467789998876  7


Q ss_pred             CcEEEEeccCCC
Q 011654           79 ADIVFVSVNTPT   90 (480)
Q Consensus        79 aDvVii~Vptp~   90 (480)
                      +|+|++|+|+..
T Consensus        76 ~D~V~i~tp~~~   87 (354)
T 3q2i_A           76 ADIVILTTPSGL   87 (354)
T ss_dssp             CSEEEECSCGGG
T ss_pred             CCEEEECCCcHH
Confidence            999999988643

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=98.36  E-value=7.9e-07  Score=87.53  Aligned_cols=70  Identities=17%  Similarity=0.267  Sum_probs=54.8

Q ss_pred             cEEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      +||+|||+|.||.. ++..|.+. ++++++ ++|+++++.+.+.+..                  ++...+|+++.++++
T Consensus         7 ~~igiIG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~~------------------~~~~~~~~~~ll~~~   67 (308)
T 3uuw_A            7 IKMGMIGLGSIAQKAYLPILTKS-ERFEFVGAFTPNKVKREKICSDY------------------RIMPFDSIESLAKKC   67 (308)
T ss_dssp             CEEEEECCSHHHHHHTHHHHTSC-SSSEEEEEECSCHHHHHHHHHHH------------------TCCBCSCHHHHHTTC
T ss_pred             CcEEEEecCHHHHHHHHHHHHhC-CCeEEEEEECCCHHHHHHHHHHc------------------CCCCcCCHHHHHhcC
Confidence            58999999999997 88878764 578877 7999999988776420                  122267888888899


Q ss_pred             cEEEEeccCCC
Q 011654           80 DIVFVSVNTPT   90 (480)
Q Consensus        80 DvVii~Vptp~   90 (480)
                      |+|++|+|+..
T Consensus        68 D~V~i~tp~~~   78 (308)
T 3uuw_A           68 DCIFLHSSTET   78 (308)
T ss_dssp             SEEEECCCGGG
T ss_pred             CEEEEeCCcHh
Confidence            99999988643

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.35  E-value=6.8e-07  Score=77.48  Aligned_cols=98  Identities=18%  Similarity=0.215  Sum_probs=69.7

Q ss_pred             cEEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIGA----GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      .+|+|||+    |.||..++.+|.+.  |++|+.++.+.+.+                        .+..+..++++..+
T Consensus        15 ~~IavIGaS~~~g~~G~~~~~~L~~~--G~~V~~vnp~~~~i------------------------~G~~~~~s~~el~~   68 (138)
T 1y81_A           15 RKIALVGASKNPAKYGNIILKDLLSK--GFEVLPVNPNYDEI------------------------EGLKCYRSVRELPK   68 (138)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHT--TCEEEEECTTCSEE------------------------TTEECBSSGGGSCT
T ss_pred             CeEEEEeecCCCCCHHHHHHHHHHHC--CCEEEEeCCCCCeE------------------------CCeeecCCHHHhCC
Confidence            58999999    99999999999988  99866666542111                        13566778888667


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~  145 (480)
                      .+|++++|||.               ..+.++++++.+ ...+.+++..||.    .+++.+..++.+
T Consensus        69 ~vDlvii~vp~---------------~~v~~v~~~~~~-~g~~~i~~~~~~~----~~~l~~~a~~~G  116 (138)
T 1y81_A           69 DVDVIVFVVPP---------------KVGLQVAKEAVE-AGFKKLWFQPGAE----SEEIRRFLEKAG  116 (138)
T ss_dssp             TCCEEEECSCH---------------HHHHHHHHHHHH-TTCCEEEECTTSC----CHHHHHHHHHHT
T ss_pred             CCCEEEEEeCH---------------HHHHHHHHHHHH-cCCCEEEEcCccH----HHHHHHHHHHCC
Confidence            89999999983               235667776665 4445677765553    466766666654

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=98.35  E-value=1.2e-06  Score=87.51  Aligned_cols=71  Identities=17%  Similarity=0.194  Sum_probs=56.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--   77 (480)
                      |+||+|||+|.||..++..|.+. ++++++ ++|+++++.+.+.+..                 +.....+|+++.++  
T Consensus         2 ~~rvgiIG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~ll~~~   63 (344)
T 3ezy_A            2 SLRIGVIGLGRIGTIHAENLKMI-DDAILYAISDVREDRLREMKEKL-----------------GVEKAYKDPHELIEDP   63 (344)
T ss_dssp             CEEEEEECCSHHHHHHHHHGGGS-TTEEEEEEECSCHHHHHHHHHHH-----------------TCSEEESSHHHHHHCT
T ss_pred             eeEEEEEcCCHHHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHHh-----------------CCCceeCCHHHHhcCC
Confidence            36999999999999999999874 578876 6899999888766420                 11246788888877  


Q ss_pred             cCcEEEEeccCC
Q 011654           78 EADIVFVSVNTP   89 (480)
Q Consensus        78 ~aDvVii~Vptp   89 (480)
                      ++|+|++|+|+.
T Consensus        64 ~~D~V~i~tp~~   75 (344)
T 3ezy_A           64 NVDAVLVCSSTN   75 (344)
T ss_dssp             TCCEEEECSCGG
T ss_pred             CCCEEEEcCCCc
Confidence            799999998864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=98.32  E-value=3.1e-06  Score=83.04  Aligned_cols=95  Identities=16%  Similarity=0.242  Sum_probs=70.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |.+|++||+++++.+.+.+..                 .......++++.++++|+
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~d~~~~~~~~~~~~g-----------------~~~~~~~~l~~~l~~aDv  218 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAAL--GANVKVGARSSAHLARITEMG-----------------LVPFHTDELKEHVKDIDI  218 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHTT-----------------CEEEEGGGHHHHSTTCSE
T ss_pred             CEEEEEcccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCC-----------------CeEEchhhHHHHhhCCCE
Confidence            5899999999999999999987  899999999998776554310                 011112467777889999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      |++++|...          .+    .    .....++++.++|+.+..+.++
T Consensus       219 Vi~~~p~~~----------i~----~----~~~~~mk~g~~lin~a~g~~~~  252 (300)
T 2rir_A          219 CINTIPSMI----------LN----Q----TVLSSMTPKTLILDLASRPGGT  252 (300)
T ss_dssp             EEECCSSCC----------BC----H----HHHTTSCTTCEEEECSSTTCSB
T ss_pred             EEECCChhh----------hC----H----HHHHhCCCCCEEEEEeCCCCCc
Confidence            999988532          11    1    2345688999999988765554

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=98.30  E-value=4.4e-06  Score=73.51  Aligned_cols=40  Identities=23%  Similarity=0.219  Sum_probs=36.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN   43 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~   43 (480)
                      ++|.|+|+|.+|..+|..|.+.  |++|+++|+++++++.++
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~--g~~V~vid~~~~~~~~~~   59 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSS--GHSVVVVDKNEYAFHRLN   59 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCGGGGGGSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHH
Confidence            6899999999999999999998  899999999999887665

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=98.29  E-value=5.2e-06  Score=82.59  Aligned_cols=116  Identities=16%  Similarity=0.245  Sum_probs=78.4

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCC-------eEEEEeCC----HHHHHH----HHCCCCCCCCCChHHHHHhhcCCC
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKI-------EVAVVDIS----VSRIAA----WNGDQLPIYEPGLEDVVTQCRGRN   65 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~----~~~v~~----l~~~~~~~~e~~l~~l~~~~~~~~   65 (480)
                      |||+|+|+ |.+|.+++..|+.+  |+       +|.++|++    +++.+.    +.....++             .+.
T Consensus         6 ~KI~ViGaaG~VG~~l~~~L~~~--~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~-------------~~~   70 (329)
T 1b8p_A            6 MRVAVTGAAGQICYSLLFRIANG--DMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPL-------------LAG   70 (329)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTT--TTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTT-------------EEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhC--CCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccc-------------cCc
Confidence            79999998 99999999999887  64       89999999    655543    33321111             135


Q ss_pred             EEEecCHHHHhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           66 LFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        66 l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      ++.+++..+++++||+||++...|... +  .++    .-+...+++.++.+.++..++.++++.| .|.++...
T Consensus        71 i~~~~~~~~al~~aD~Vi~~ag~~~~~-g--~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~S-NPv~~~t~  141 (329)
T 1b8p_A           71 MTAHADPMTAFKDADVALLVGARPRGP-G--MERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVG-NPANTNAY  141 (329)
T ss_dssp             EEEESSHHHHTTTCSEEEECCCCCCCT-T--CCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS-SSHHHHHH
T ss_pred             EEEecCcHHHhCCCCEEEEeCCCCCCC-C--CCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcc-CchHHHHH
Confidence            677889888899999999998876532 1  000    0123445666777777763455565544 67776544

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=98.29  E-value=1.6e-06  Score=86.98  Aligned_cols=70  Identities=13%  Similarity=0.176  Sum_probs=54.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh--cc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV--AE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~--~~   78 (480)
                      +||+|||+|.||..++..|.+. ++++|+ ++|+++++.+.+.+..                  ++...+|+++.+  .+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~-~~~~lvav~d~~~~~~~~~~~~~------------------g~~~~~~~~~~l~~~~   66 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAYTKS-EKLKLVTCYSRTEDKREKFGKRY------------------NCAGDATMEALLARED   66 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTC-SSEEEEEEECSSHHHHHHHHHHH------------------TCCCCSSHHHHHHCSS
T ss_pred             ceEEEEccCHHHHHHHHHHHhC-CCcEEEEEECCCHHHHHHHHHHc------------------CCCCcCCHHHHhcCCC
Confidence            4899999999999999998865 578865 7899999888765420                  122357888877  56


Q ss_pred             CcEEEEeccCCC
Q 011654           79 ADIVFVSVNTPT   90 (480)
Q Consensus        79 aDvVii~Vptp~   90 (480)
                      +|+|++|+|+..
T Consensus        67 ~D~V~i~tp~~~   78 (354)
T 3db2_A           67 VEMVIITVPNDK   78 (354)
T ss_dssp             CCEEEECSCTTS
T ss_pred             CCEEEEeCChHH
Confidence            899999998754

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=98.29  E-value=4e-06  Score=81.98  Aligned_cols=93  Identities=14%  Similarity=0.147  Sum_probs=68.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE--ecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF--STDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~--t~d~~~a~~~a   79 (480)
                      ++|+|||+|.||..+|..+...  |.+|+++|+++++.+.+.+-                   +...  ..++++.++++
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~--G~~V~~~dr~~~~~~~~~~~-------------------g~~~~~~~~l~~~l~~a  214 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAAL--GAKVKVGARESDLLARIAEM-------------------GMEPFHISKAAQELRDV  214 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHT-------------------TSEEEEGGGHHHHTTTC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHC-------------------CCeecChhhHHHHhcCC
Confidence            5899999999999999999987  89999999999876655431                   1122  24567778999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      |+|++|+|...          .+    .    .....++++.++|+.+..+.++
T Consensus       215 DvVi~~~p~~~----------i~----~----~~l~~mk~~~~lin~ar~~~~~  250 (293)
T 3d4o_A          215 DVCINTIPALV----------VT----A----NVLAEMPSHTFVIDLASKPGGT  250 (293)
T ss_dssp             SEEEECCSSCC----------BC----H----HHHHHSCTTCEEEECSSTTCSB
T ss_pred             CEEEECCChHH----------hC----H----HHHHhcCCCCEEEEecCCCCCC
Confidence            99999987532          11    1    1234578899999988765554

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=98.29  E-value=2.7e-06  Score=85.03  Aligned_cols=72  Identities=22%  Similarity=0.299  Sum_probs=56.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCC-CEEEecCHHHHhcc-
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGR-NLFFSTDIEKHVAE-   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~-~l~~t~d~~~a~~~-   78 (480)
                      +||+|||+|.||..++..|.++.++++++ ++|+++++.+.+.+..                 + .....+|+++.+++ 
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~-----------------g~~~~~~~~~~~ll~~~   65 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQY-----------------QLNATVYPNDDSLLADE   65 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHT-----------------TCCCEEESSHHHHHHCT
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHh-----------------CCCCeeeCCHHHHhcCC
Confidence            69999999999999999998433578866 6899999888776421                 1 14567899988765 


Q ss_pred             -CcEEEEeccCCC
Q 011654           79 -ADIVFVSVNTPT   90 (480)
Q Consensus        79 -aDvVii~Vptp~   90 (480)
                       +|+|++|+|+..
T Consensus        66 ~~D~V~i~tp~~~   78 (344)
T 3mz0_A           66 NVDAVLVTSWGPA   78 (344)
T ss_dssp             TCCEEEECSCGGG
T ss_pred             CCCEEEECCCchh
Confidence             899999988643

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.28  E-value=1.4e-06  Score=87.31  Aligned_cols=108  Identities=10%  Similarity=0.026  Sum_probs=76.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..++..|....+..+|++||+++++.+.+.+....  .++          -.+..+++++++++++|+
T Consensus       130 ~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~--~~g----------~~~~~~~~~~eav~~aDi  197 (350)
T 1x7d_A          130 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE--YSG----------LTIRRASSVAEAVKGVDI  197 (350)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT--CTT----------CEEEECSSHHHHHTTCSE
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHh--ccC----------ceEEEeCCHHHHHhcCCE
Confidence            58999999999999998886533367999999999998887642000  000          124567889998999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHH
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEK  139 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~  139 (480)
                      |++|+|++...        +       ++.  ...+++|++|+..+|..|+. +++.+
T Consensus       198 Vi~aTps~~~~--------p-------vl~--~~~l~~G~~V~~vgs~~p~~-~El~~  237 (350)
T 1x7d_A          198 ITTVTADKAYA--------T-------IIT--PDMLEPGMHLNAVGGDCPGK-TELHA  237 (350)
T ss_dssp             EEECCCCSSEE--------E-------EEC--GGGCCTTCEEEECSCCBTTB-EEECH
T ss_pred             EEEeccCCCCC--------c-------eec--HHHcCCCCEEEECCCCCCCc-eeeCH
Confidence            99998865211        0       010  24578899999999987773 33433

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=98.27  E-value=1.4e-06  Score=83.84  Aligned_cols=103  Identities=18%  Similarity=0.144  Sum_probs=72.3

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEE
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIV   82 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvV   82 (480)
                      +|+|||+|.||.++|..|.+.  |++|+++|+++++.+.+.+.               .  + .. .++++++ +++|+|
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~--g~~v~v~~r~~~~~~~l~~~---------------~--~-~~-~~~~~~~-~~~Div  175 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREA--GLEVWVWNRTPQRALALAEE---------------F--G-LR-AVPLEKA-REARLL  175 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHH---------------H--T-CE-ECCGGGG-GGCSEE
T ss_pred             eEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHH---------------h--c-cc-hhhHhhc-cCCCEE
Confidence            699999999999999999988  78999999999888776531               0  1 12 3566776 899999


Q ss_pred             EEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHh
Q 011654           83 FVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTH  143 (480)
Q Consensus        83 ii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~  143 (480)
                      |+|+|.+...         +..   ..+.  .+.++++++|++.++.+..+ + +.+.+++
T Consensus       176 i~~tp~~~~~---------~~~---~~l~--~~~l~~g~~viD~~~~p~~t-~-l~~~a~~  220 (263)
T 2d5c_A          176 VNATRVGLED---------PSA---SPLP--AELFPEEGAAVDLVYRPLWT-R-FLREAKA  220 (263)
T ss_dssp             EECSSTTTTC---------TTC---CSSC--GGGSCSSSEEEESCCSSSSC-H-HHHHHHH
T ss_pred             EEccCCCCCC---------CCC---CCCC--HHHcCCCCEEEEeecCCccc-H-HHHHHHH
Confidence            9999875422         000   0011  34577899999887765544 3 4444444

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=98.25  E-value=2.7e-06  Score=88.02  Aligned_cols=81  Identities=19%  Similarity=0.199  Sum_probs=59.5

Q ss_pred             cEEEEEcCChh-HHHHHHHHHH--c-CCCCeEEEEeCCH--HHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHH
Q 011654            2 VKICCIGAGYV-GGPTMAVIAL--K-CPKIEVAVVDISV--SRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEK   74 (480)
Q Consensus         2 mkI~VIGlG~~-G~~lA~~La~--~-~~G~~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~   74 (480)
                      |||+|||+|.+ |.+++..|+.  . .++++|++||+++  ++++.++.-        ...++.. ....+++.++|+.+
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~--------~~~~~~~~~~~~~i~~t~D~~e   79 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGAL--------AKRMVEKAGVPIEIHLTLDRRR   79 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHH--------HHHHHHHTTCCCEEEEESCHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHH--------HHHHHhhcCCCcEEEEeCCHHH
Confidence            69999999999 8888888886  2 1257899999999  887775421        0112111 12345788899988


Q ss_pred             HhccCcEEEEeccCCC
Q 011654           75 HVAEADIVFVSVNTPT   90 (480)
Q Consensus        75 a~~~aDvVii~Vptp~   90 (480)
                      ++++||+||+++|.+.
T Consensus        80 al~gAD~VVitagv~~   95 (450)
T 1s6y_A           80 ALDGADFVTTQFRVGG   95 (450)
T ss_dssp             HHTTCSEEEECCCTTH
T ss_pred             HhCCCCEEEEcCCCCC
Confidence            8999999999998753

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=98.25  E-value=4.2e-06  Score=72.21  Aligned_cols=43  Identities=19%  Similarity=0.174  Sum_probs=39.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD   45 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~   45 (480)
                      |++|.|+|+|.+|..+|..|.+.  |++|+++|+++++++.+.+.
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~--g~~V~~id~~~~~~~~~~~~   48 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAA--GKKVLAVDKSKEKIELLEDE   48 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHC
Confidence            35799999999999999999998  99999999999999888753

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=98.24  E-value=3.4e-06  Score=87.05  Aligned_cols=76  Identities=20%  Similarity=0.192  Sum_probs=57.4

Q ss_pred             cEEEEEcCChh--HHHHHHHHHHcC--CCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIGAGYV--GGPTMAVIALKC--PKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGlG~~--G~~lA~~La~~~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      |||+|||+|.|  |..++..|+...  .| +|++||+++++++.++.-...+..          ...++++|+|++++++
T Consensus         6 ~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~----------~~~~I~~TtD~~eAl~   74 (450)
T 3fef_A            6 IKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGN----------GRWRYEAVSTLKKALS   74 (450)
T ss_dssp             EEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTT----------SCEEEEEESSHHHHHT
T ss_pred             CEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhc----------cCCeEEEECCHHHHhc
Confidence            59999999996  678888888621  26 999999999887765431111111          1246889999999999


Q ss_pred             cCcEEEEeccC
Q 011654           78 EADIVFVSVNT   88 (480)
Q Consensus        78 ~aDvVii~Vpt   88 (480)
                      +||+||++++.
T Consensus        75 dADfVI~airv   85 (450)
T 3fef_A           75 AADIVIISILP   85 (450)
T ss_dssp             TCSEEEECCCS
T ss_pred             CCCEEEecccc
Confidence            99999999973

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=98.23  E-value=5.5e-06  Score=82.66  Aligned_cols=71  Identities=15%  Similarity=0.248  Sum_probs=54.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEV-AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~   78 (480)
                      +||+|||+|.||..++..|..+.+++++ .++|+++++.+.+.+..                 +...+.+|+++.++  +
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~-----------------g~~~~~~~~~~~l~~~~   71 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNEL-----------------GVETTYTNYKDMIDTEN   71 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTT-----------------CCSEEESCHHHHHTTSC
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHh-----------------CCCcccCCHHHHhcCCC
Confidence            6899999999999999998822247775 57899999887765420                 11145678888775  6


Q ss_pred             CcEEEEeccCC
Q 011654           79 ADIVFVSVNTP   89 (480)
Q Consensus        79 aDvVii~Vptp   89 (480)
                      +|+|++|+|+.
T Consensus        72 ~D~V~i~tp~~   82 (346)
T 3cea_A           72 IDAIFIVAPTP   82 (346)
T ss_dssp             CSEEEECSCGG
T ss_pred             CCEEEEeCChH
Confidence            99999998854

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=98.23  E-value=1.9e-06  Score=85.80  Aligned_cols=71  Identities=8%  Similarity=0.079  Sum_probs=55.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~   78 (480)
                      +||+|||+|.||..++..|.+. ++++|+ ++|+++++.+.+.+..                 +..+.++|+++.++  +
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~ll~~~~   67 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRES-AQAEVRGIASRRLENAQKMAKEL-----------------AIPVAYGSYEELCKDET   67 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHS-SSEEEEEEBCSSSHHHHHHHHHT-----------------TCCCCBSSHHHHHHCTT
T ss_pred             EEEEEECchHHHHHHHHHHHhC-CCcEEEEEEeCCHHHHHHHHHHc-----------------CCCceeCCHHHHhcCCC
Confidence            5899999999999999999875 477877 6899999887766421                 11134678888776  7


Q ss_pred             CcEEEEeccCCC
Q 011654           79 ADIVFVSVNTPT   90 (480)
Q Consensus        79 aDvVii~Vptp~   90 (480)
                      +|+|++|+|+..
T Consensus        68 ~D~V~i~tp~~~   79 (330)
T 3e9m_A           68 IDIIYIPTYNQG   79 (330)
T ss_dssp             CSEEEECCCGGG
T ss_pred             CCEEEEcCCCHH
Confidence            999999988643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=98.22  E-value=4.2e-06  Score=72.40  Aligned_cols=71  Identities=15%  Similarity=0.256  Sum_probs=52.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCC--CCChHHHHHhhcCCCEEEecCHHH-Hhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIY--EPGLEDVVTQCRGRNLFFSTDIEK-HVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~l~~~~~~~~l~~t~d~~~-a~~~   78 (480)
                      ++|.|+|+|.+|..+|..|.+.  |++|+++|+|+++++.+.+......  +..-.+.              +++ .+.+
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~--------------l~~a~i~~   71 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRTRVDELRERGVRAVLGNAANEEI--------------MQLAHLEC   71 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHH--------------HHHTTGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHH--------------HHhcCccc
Confidence            4799999999999999999998  9999999999999998875321111  1111111              111 2568


Q ss_pred             CcEEEEeccC
Q 011654           79 ADIVFVSVNT   88 (480)
Q Consensus        79 aDvVii~Vpt   88 (480)
                      +|++|+|+|+
T Consensus        72 ad~vi~~~~~   81 (140)
T 3fwz_A           72 AKWLILTIPN   81 (140)
T ss_dssp             CSEEEECCSC
T ss_pred             CCEEEEECCC
Confidence            9999999875

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=98.22  E-value=3.3e-06  Score=83.37  Aligned_cols=67  Identities=21%  Similarity=0.275  Sum_probs=52.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEV-AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~   78 (480)
                      +||+|||+|.||..++..|.+. +++++ .++|+++++.+.+.+.                    +...+|++++++  +
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~-~~~~~v~v~d~~~~~~~~~~~~--------------------~~~~~~~~~~l~~~~   69 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGL-PGAALVRLASSNPDNLALVPPG--------------------CVIESDWRSVVSAPE   69 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHC-TTEEEEEEEESCHHHHTTCCTT--------------------CEEESSTHHHHTCTT
T ss_pred             ceEEEECCcHHHHHHHHHHHhC-CCcEEEEEEeCCHHHHHHHHhh--------------------CcccCCHHHHhhCCC
Confidence            6899999999999999999875 46775 4899999877544321                    345678888775  7


Q ss_pred             CcEEEEeccCC
Q 011654           79 ADIVFVSVNTP   89 (480)
Q Consensus        79 aDvVii~Vptp   89 (480)
                      +|+|++|+|+.
T Consensus        70 ~D~V~i~tp~~   80 (315)
T 3c1a_A           70 VEAVIIATPPA   80 (315)
T ss_dssp             CCEEEEESCGG
T ss_pred             CCEEEEeCChH
Confidence            99999998854

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=98.19  E-value=6.1e-06  Score=83.05  Aligned_cols=69  Identities=20%  Similarity=0.284  Sum_probs=53.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~   78 (480)
                      +||+|||+|.||..++..|.+. ++++|+ ++|+++++.+...+-                   ++...+|+++.++  +
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~-~~~~l~av~d~~~~~~~~a~~~-------------------g~~~~~~~~~ll~~~~   65 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAA-DNLEVHGVFDILAEKREAAAQK-------------------GLKIYESYEAVLADEK   65 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTS-TTEEEEEEECSSHHHHHHHHTT-------------------TCCBCSCHHHHHHCTT
T ss_pred             CcEEEECcCHHHHHHHHHHHhC-CCcEEEEEEcCCHHHHHHHHhc-------------------CCceeCCHHHHhcCCC
Confidence            4799999999999999988765 578876 579999987654331                   2345678888776  7


Q ss_pred             CcEEEEeccCCC
Q 011654           79 ADIVFVSVNTPT   90 (480)
Q Consensus        79 aDvVii~Vptp~   90 (480)
                      .|+|+||+|+..
T Consensus        66 ~D~V~i~tp~~~   77 (359)
T 3e18_A           66 VDAVLIATPNDS   77 (359)
T ss_dssp             CCEEEECSCGGG
T ss_pred             CCEEEEcCCcHH
Confidence            899999988643

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=98.18  E-value=5.4e-06  Score=83.17  Aligned_cols=70  Identities=13%  Similarity=0.184  Sum_probs=54.5

Q ss_pred             cEEEEEcCChhHH-HHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654            2 VKICCIGAGYVGG-PTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--   77 (480)
Q Consensus         2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--   77 (480)
                      +||+|||+|.||. .++..|.+. ++++|+ ++|+++++.+.+.+.                  -++...+|+++.++  
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~------------------~g~~~~~~~~~ll~~~   88 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAE-PLTEVTAIASRRWDRAKRFTER------------------FGGEPVEGYPALLERD   88 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHC-TTEEEEEEEESSHHHHHHHHHH------------------HCSEEEESHHHHHTCT
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhC-CCeEEEEEEcCCHHHHHHHHHH------------------cCCCCcCCHHHHhcCC
Confidence            5899999999998 788888875 578876 789999988876642                  02344588888775  


Q ss_pred             cCcEEEEeccCCC
Q 011654           78 EADIVFVSVNTPT   90 (480)
Q Consensus        78 ~aDvVii~Vptp~   90 (480)
                      +.|+|+||+|+..
T Consensus        89 ~~D~V~i~tp~~~  101 (350)
T 3rc1_A           89 DVDAVYVPLPAVL  101 (350)
T ss_dssp             TCSEEEECCCGGG
T ss_pred             CCCEEEECCCcHH
Confidence            5899999988653

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=98.17  E-value=4e-06  Score=84.38  Aligned_cols=72  Identities=19%  Similarity=0.290  Sum_probs=56.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCC-CEEEecCHHHHhc--
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGR-NLFFSTDIEKHVA--   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~-~l~~t~d~~~a~~--   77 (480)
                      +||+|||+|.||..++..|....++++++ ++|+++++.+.+.+..                 + .....+|+++.++  
T Consensus        24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~-----------------g~~~~~~~~~~~ll~~~   86 (357)
T 3ec7_A           24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKY-----------------AIEAKDYNDYHDLINDK   86 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHH-----------------TCCCEEESSHHHHHHCT
T ss_pred             eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh-----------------CCCCeeeCCHHHHhcCC
Confidence            58999999999999999998433578876 6899999887765420                 1 2456788988776  


Q ss_pred             cCcEEEEeccCCC
Q 011654           78 EADIVFVSVNTPT   90 (480)
Q Consensus        78 ~aDvVii~Vptp~   90 (480)
                      +.|+|+||+|+..
T Consensus        87 ~~D~V~i~tp~~~   99 (357)
T 3ec7_A           87 DVEVVIITASNEA   99 (357)
T ss_dssp             TCCEEEECSCGGG
T ss_pred             CCCEEEEcCCcHH
Confidence            5899999988653

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.16  E-value=1.1e-06  Score=76.73  Aligned_cols=98  Identities=13%  Similarity=0.038  Sum_probs=68.1

Q ss_pred             cEEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654            2 VKICCIGA----GYVGGPTMAVIALKCPKIEVAVVDISV--SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a   75 (480)
                      .+|+|||+    |.||..++.+|.+.  |++|+.+|.+.  +.+                        .++.+..++++.
T Consensus        14 ~~IavIGas~~~g~~G~~~~~~L~~~--G~~v~~vnp~~~g~~i------------------------~G~~~~~sl~el   67 (145)
T 2duw_A           14 RTIALVGASDKPDRPSYRVMKYLLDQ--GYHVIPVSPKVAGKTL------------------------LGQQGYATLADV   67 (145)
T ss_dssp             CCEEEESCCSCTTSHHHHHHHHHHHH--TCCEEEECSSSTTSEE------------------------TTEECCSSTTTC
T ss_pred             CEEEEECcCCCCCChHHHHHHHHHHC--CCEEEEeCCccccccc------------------------CCeeccCCHHHc
Confidence            47999999    89999999999998  89876666543  111                        135666777776


Q ss_pred             hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654           76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~  145 (480)
                      ...+|++++|+|.+               .+.++++++.+ ...+.+++..||.    .+++.+.+++.+
T Consensus        68 ~~~~Dlvii~vp~~---------------~v~~v~~~~~~-~g~~~i~i~~~~~----~~~l~~~a~~~G  117 (145)
T 2duw_A           68 PEKVDMVDVFRNSE---------------AAWGVAQEAIA-IGAKTLWLQLGVI----NEQAAVLAREAG  117 (145)
T ss_dssp             SSCCSEEECCSCST---------------HHHHHHHHHHH-HTCCEEECCTTCC----CHHHHHHHHTTT
T ss_pred             CCCCCEEEEEeCHH---------------HHHHHHHHHHH-cCCCEEEEcCChH----HHHHHHHHHHcC
Confidence            67899999999842               24666766665 3445566654444    466777776654

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=98.15  E-value=8.3e-06  Score=82.07  Aligned_cols=70  Identities=11%  Similarity=0.142  Sum_probs=54.4

Q ss_pred             cEEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc-
Q 011654            2 VKICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE-   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~-   78 (480)
                      +||+|||+|.||.. ++..|.+. ++.+|+ ++|+++++.+.+.+..                 +.....+|+++.+++ 
T Consensus         6 ~rigiIG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~   67 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSLLQM-QDIRIVAACDSDLERARRVHRFI-----------------SDIPVLDNVPAMLNQV   67 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTC-TTEEEEEEECSSHHHHGGGGGTS-----------------CSCCEESSHHHHHHHS
T ss_pred             ceEEEECCCHHHHHHHHHHHHhC-CCcEEEEEEcCCHHHHHHHHHhc-----------------CCCcccCCHHHHhcCC
Confidence            58999999999985 78888764 578876 7899999988776531                 234567889988764 


Q ss_pred             -CcEEEEeccCC
Q 011654           79 -ADIVFVSVNTP   89 (480)
Q Consensus        79 -aDvVii~Vptp   89 (480)
                       .|+|+||+|+.
T Consensus        68 ~vD~V~i~tp~~   79 (359)
T 3m2t_A           68 PLDAVVMAGPPQ   79 (359)
T ss_dssp             CCSEEEECSCHH
T ss_pred             CCCEEEEcCCcH
Confidence             59999998854

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=98.14  E-value=4.7e-06  Score=82.50  Aligned_cols=71  Identities=23%  Similarity=0.259  Sum_probs=50.4

Q ss_pred             CcEEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-cc
Q 011654            1 MVKICCIGAGYVGGP-TMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~   78 (480)
                      +|||+|||+|.||.. ++..|.+. ++++|+++|+++++.+.+.+..                 +.-....+..+.+ .+
T Consensus         2 ~~~igiIG~G~ig~~~~~~~l~~~-~~~~l~v~d~~~~~~~~~a~~~-----------------g~~~~~~~~~~~l~~~   63 (323)
T 1xea_A            2 SLKIAMIGLGDIAQKAYLPVLAQW-PDIELVLCTRNPKVLGTLATRY-----------------RVSATCTDYRDVLQYG   63 (323)
T ss_dssp             CEEEEEECCCHHHHHTHHHHHTTS-TTEEEEEECSCHHHHHHHHHHT-----------------TCCCCCSSTTGGGGGC
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhC-CCceEEEEeCCHHHHHHHHHHc-----------------CCCccccCHHHHhhcC
Confidence            369999999999984 88888764 4788889999999988776421                 0001022333345 68


Q ss_pred             CcEEEEeccCC
Q 011654           79 ADIVFVSVNTP   89 (480)
Q Consensus        79 aDvVii~Vptp   89 (480)
                      +|+|++|+|+.
T Consensus        64 ~D~V~i~tp~~   74 (323)
T 1xea_A           64 VDAVMIHAATD   74 (323)
T ss_dssp             CSEEEECSCGG
T ss_pred             CCEEEEECCch
Confidence            99999998854

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=98.14  E-value=2.2e-06  Score=85.78  Aligned_cols=108  Identities=12%  Similarity=0.138  Sum_probs=67.8

Q ss_pred             CcEEEEEcCChhHHHHHHH-HHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGAGYVGGPTMAV-IALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~-La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      ++||+|||+|.||..+... +....++++|+ ++|+++++.+...+                  ..+....+|+++.+++
T Consensus         2 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~------------------~~~~~~~~~~~~ll~~   63 (345)
T 3f4l_A            2 VINCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPI------------------YSHIHFTSDLDEVLND   63 (345)
T ss_dssp             CEEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGG------------------GTTCEEESCTHHHHTC
T ss_pred             ceEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHh------------------cCCCceECCHHHHhcC
Confidence            4699999999999874444 43333578877 78998775532221                  1235677899988765


Q ss_pred             --CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC--ccchHHHHHHHHHhc
Q 011654           79 --ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV--PVKTAEAIEKILTHN  144 (480)
Q Consensus        79 --aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv--~~gt~~~l~~~l~~~  144 (480)
                        .|+|+||+|+..+.              +-    +...++.|+.|+++..+  .....+++.+..++.
T Consensus        64 ~~~D~V~i~tp~~~h~--------------~~----~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~  115 (345)
T 3f4l_A           64 PDVKLVVVCTHADSHF--------------EY----AKRALEAGKNVLVEKPFTPTLAQAKELFALAKSK  115 (345)
T ss_dssp             TTEEEEEECSCGGGHH--------------HH----HHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEcCChHHHH--------------HH----HHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHHc
Confidence              89999998864321              11    22334457778777533  334444555555554

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=98.12  E-value=7.5e-06  Score=81.90  Aligned_cols=108  Identities=16%  Similarity=0.178  Sum_probs=70.6

Q ss_pred             CcEEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-
Q 011654            1 MVKICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-   77 (480)
                      |+||||||+|.||.. ++..+.+. ++.+|+ ++|+++++.+.+.+..                 +.-++.+|+++.++ 
T Consensus        23 mirigiIG~G~ig~~~~~~~~~~~-~~~~lvav~d~~~~~a~~~a~~~-----------------g~~~~y~d~~ell~~   84 (350)
T 4had_A           23 MLRFGIISTAKIGRDNVVPAIQDA-ENCVVTAIASRDLTRAREMADRF-----------------SVPHAFGSYEEMLAS   84 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHC-SSEEEEEEECSSHHHHHHHHHHH-----------------TCSEEESSHHHHHHC
T ss_pred             ccEEEEEcChHHHHHHHHHHHHhC-CCeEEEEEECCCHHHHHHHHHHc-----------------CCCeeeCCHHHHhcC
Confidence            679999999999975 45566654 577876 6899999988876420                 11246789998775 


Q ss_pred             -cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC--ccchHHHHHHHHHhc
Q 011654           78 -EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV--PVKTAEAIEKILTHN  144 (480)
Q Consensus        78 -~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv--~~gt~~~l~~~l~~~  144 (480)
                       +.|+|+||+|+..+.              .-+.    ..+..|+-|+++-.+  .....++|.+..++.
T Consensus        85 ~~iDaV~I~tP~~~H~--------------~~~~----~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~  136 (350)
T 4had_A           85 DVIDAVYIPLPTSQHI--------------EWSI----KAADAGKHVVCEKPLALKAGDIDAVIAARDRN  136 (350)
T ss_dssp             SSCSEEEECSCGGGHH--------------HHHH----HHHHTTCEEEECSCCCSSGGGGHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCchhH--------------HHHH----HHHhcCCEEEEeCCcccchhhHHHHHHHHHHc
Confidence             579999998865432              2222    223346667766533  333445555555544

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=98.11  E-value=1.5e-05  Score=82.69  Aligned_cols=99  Identities=10%  Similarity=0.034  Sum_probs=72.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |.+|++||+++.+.......                   ++++ .+++++++.||+
T Consensus       258 ktVgIIG~G~IG~~vA~~l~~~--G~~Viv~d~~~~~~~~a~~~-------------------g~~~-~~l~ell~~aDi  315 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSMKGL--GARVYITEIDPICAIQAVME-------------------GFNV-VTLDEIVDKGDF  315 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHHHHHHHTT-------------------TCEE-CCHHHHTTTCSE
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC--cCEEEEEeCChhhHHHHHHc-------------------CCEe-cCHHHHHhcCCE
Confidence            5899999999999999999987  99999999999865332221                   1233 478888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccc-hHHHHHH
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVK-TAEAIEK  139 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g-t~~~l~~  139 (480)
                      |++|+.+..         ..+        +...+.++++.+|++.++.++. ..+.+.+
T Consensus       316 Vi~~~~t~~---------lI~--------~~~l~~MK~gailiNvgrg~~EId~~aL~~  357 (479)
T 1v8b_A          316 FITCTGNVD---------VIK--------LEHLLKMKNNAVVGNIGHFDDEIQVNELFN  357 (479)
T ss_dssp             EEECCSSSS---------SBC--------HHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             EEECCChhh---------hcC--------HHHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence            999964431         111        2344668999999999887663 4455544

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=98.11  E-value=1.4e-05  Score=80.53  Aligned_cols=104  Identities=19%  Similarity=0.266  Sum_probs=67.8

Q ss_pred             cEEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654            2 VKICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--   77 (480)
                      +||+|||+|.||.. .+..+.+. ++++|+ ++|+++++.+.-.                    +...+.+|+++.++  
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~--------------------~~~~~~~~~~~ll~~~   66 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLIRSV-PGLNLAFVASRDEEKVKRDL--------------------PDVTVIASPEAAVQHP   66 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTS-TTEEEEEEECSCHHHHHHHC--------------------TTSEEESCHHHHHTCT
T ss_pred             ceEEEECCCHHHHHHHHHHHhhC-CCeEEEEEEcCCHHHHHhhC--------------------CCCcEECCHHHHhcCC
Confidence            58999999999997 56666553 578876 7899998765211                    23467789999877  


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC--ccchHHHHHHHHHhc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV--PVKTAEAIEKILTHN  144 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv--~~gt~~~l~~~l~~~  144 (480)
                      +.|+|+||+|+..+.              +-    +...+..|+-|+++..+  .....+++.+..++.
T Consensus        67 ~~D~V~i~tp~~~H~--------------~~----~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~  117 (364)
T 3e82_A           67 DVDLVVIASPNATHA--------------PL----ARLALNAGKHVVVDKPFTLDMQEARELIALAEEK  117 (364)
T ss_dssp             TCSEEEECSCGGGHH--------------HH----HHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCChHHHH--------------HH----HHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHHh
Confidence            789999998864321              21    22234456777777633  333344455554443

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=98.09  E-value=1.2e-05  Score=69.00  Aligned_cols=41  Identities=27%  Similarity=0.426  Sum_probs=37.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      ++|.|+|+|.+|..++..|.+.  |++|+++|+++++.+.+.+
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~--g~~v~~~d~~~~~~~~~~~   47 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYAS   47 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHTTTT
T ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            4699999999999999999998  8999999999998877654

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=98.09  E-value=5.1e-06  Score=84.33  Aligned_cols=113  Identities=19%  Similarity=0.222  Sum_probs=70.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE--E--------ecC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF--F--------STD   71 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~--~--------t~d   71 (480)
                      .||+|||+|.+|..+|..+...  |.+|+++|+++++.+.+.+-...+.+-.+.+.-..-..+...  .        ..+
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~  268 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRL--GAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAAL  268 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhH
Confidence            4899999999999999999887  899999999999888776522211110000000000000000  0        124


Q ss_pred             HHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           72 IEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      ++++++++|+||.|+..|-..       .+.+     +.++..+.++++.+||+.|.
T Consensus       269 l~e~l~~aDVVI~tvlipg~~-------ap~L-----vt~emv~~Mk~GsVIVDvA~  313 (405)
T 4dio_A          269 VAEHIAKQDIVITTALIPGRP-------APRL-----VTREMLDSMKPGSVVVDLAV  313 (405)
T ss_dssp             HHHHHHTCSEEEECCCCSSSC-------CCCC-----BCHHHHTTSCTTCEEEETTG
T ss_pred             HHHHhcCCCEEEECCcCCCCC-------CCEE-----ecHHHHhcCCCCCEEEEEeC
Confidence            677889999999997554321       1221     12456677899999998663

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=98.08  E-value=6.7e-06  Score=81.22  Aligned_cols=69  Identities=16%  Similarity=0.233  Sum_probs=51.0

Q ss_pred             cEEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      +||+|||+|.||.. ++..|.+. ++++++ ++|+++++.+.+.+..                  ++.+++++++...++
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~-~~~~lvav~d~~~~~~~~~~~~~------------------g~~~~~~~~~l~~~~   66 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAA-SDWTLQGAWSPTRAKALPICESW------------------RIPYADSLSSLAASC   66 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSC-SSEEEEEEECSSCTTHHHHHHHH------------------TCCBCSSHHHHHTTC
T ss_pred             ceEEEECCCHHHHHHHHHHHHhC-CCeEEEEEECCCHHHHHHHHHHc------------------CCCccCcHHHhhcCC
Confidence            68999999999997 88888753 478876 8999988777655310                  112456776644689


Q ss_pred             cEEEEeccCC
Q 011654           80 DIVFVSVNTP   89 (480)
Q Consensus        80 DvVii~Vptp   89 (480)
                      |+|++|+|+.
T Consensus        67 D~V~i~tp~~   76 (319)
T 1tlt_A           67 DAVFVHSSTA   76 (319)
T ss_dssp             SEEEECSCTT
T ss_pred             CEEEEeCCch
Confidence            9999998854

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=98.08  E-value=5.3e-06  Score=83.54  Aligned_cols=110  Identities=15%  Similarity=0.179  Sum_probs=69.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE---------EecCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF---------FSTDI   72 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~---------~t~d~   72 (480)
                      .||+|||+|.+|..+|..+...  |.+|+++|+++++.+.+.+-...+.+...+. ..  ..+..+         -..++
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~l--Ga~V~v~D~~~~~l~~~~~lGa~~~~l~~~~-~~--~~gya~~~~~~~~~~~~~~l  259 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRL--GAKTTGYDVRPEVAEQVRSVGAQWLDLGIDA-AG--EGGYARELSEAERAQQQQAL  259 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSGGGHHHHHHTTCEECCCC----------------CHHHHHHHHHHH
T ss_pred             CEEEEECchHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHcCCeEEeccccc-cc--cccchhhhhHHHHhhhHHHH
Confidence            4899999999999999999887  8999999999998887765211111100000 00  000000         01346


Q ss_pred             HHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           73 EKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      ++.++++|+||.|+..|...       .+.+     +.++..+.++++.+||+.|.
T Consensus       260 ~e~l~~aDIVI~tv~iPg~~-------ap~L-----vt~emv~~MkpGsVIVDvA~  303 (381)
T 3p2y_A          260 EDAITKFDIVITTALVPGRP-------APRL-----VTAAAATGMQPGSVVVDLAG  303 (381)
T ss_dssp             HHHHTTCSEEEECCCCTTSC-------CCCC-----BCHHHHHTSCTTCEEEETTG
T ss_pred             HHHHhcCCEEEECCCCCCcc-------ccee-----ecHHHHhcCCCCcEEEEEeC
Confidence            67789999999997544211       1111     12456667889999998653

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=98.07  E-value=9.9e-06  Score=76.89  Aligned_cols=107  Identities=16%  Similarity=0.122  Sum_probs=66.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      ||||+|+|+|.||..++..+...  ++++++ +|++++.     .                   .++..++|+++.+ ++
T Consensus         3 MmkI~ViGaGrMG~~i~~~l~~~--~~eLva~~d~~~~~-----~-------------------~gv~v~~dl~~l~-~~   55 (243)
T 3qy9_A            3 SMKILLIGYGAMNQRVARLAEEK--GHEIVGVIENTPKA-----T-------------------TPYQQYQHIADVK-GA   55 (243)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEEECSSCC--------------------------CCSCBCSCTTTCT-TC
T ss_pred             ceEEEEECcCHHHHHHHHHHHhC--CCEEEEEEecCccc-----c-------------------CCCceeCCHHHHh-CC
Confidence            68999999999999999999887  447665 7887541     0                   1234567777766 89


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      |++|-+.. |                 ..+.+.+ . ++.+.-+|+.+|   |.+++-.+.+++..  ....++++|.+.
T Consensus        56 DVvIDft~-p-----------------~a~~~~~-~-l~~g~~vVigTT---G~s~e~~~~l~~aa--~~~~v~~a~N~S  110 (243)
T 3qy9_A           56 DVAIDFSN-P-----------------NLLFPLL-D-EDFHLPLVVATT---GEKEKLLNKLDELS--QNMPVFFSANMS  110 (243)
T ss_dssp             SEEEECSC-H-----------------HHHHHHH-T-SCCCCCEEECCC---SSHHHHHHHHHHHT--TTSEEEECSSCC
T ss_pred             CEEEEeCC-h-----------------HHHHHHH-H-HhcCCceEeCCC---CCCHHHHHHHHHHH--hcCCEEEECCcc
Confidence            99885532 2                 1223333 3 666776776665   33333223333332  134677888764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.06  E-value=2.3e-05  Score=70.72  Aligned_cols=71  Identities=11%  Similarity=0.211  Sum_probs=50.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecC---HHHH--h
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTD---IEKH--V   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d---~~~a--~   76 (480)
                      ++|.|+|+|.||..+|..|.+.. |++|+++|+++++++.+.+.......            +.   .++   +.++  +
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~-g~~V~vid~~~~~~~~~~~~g~~~~~------------gd---~~~~~~l~~~~~~  103 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARY-GKISLGIEIREEAAQQHRSEGRNVIS------------GD---ATDPDFWERILDT  103 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHH-CSCEEEEESCHHHHHHHHHTTCCEEE------------CC---TTCHHHHHTBCSC
T ss_pred             CcEEEECCCHHHHHHHHHHHhcc-CCeEEEEECCHHHHHHHHHCCCCEEE------------cC---CCCHHHHHhccCC
Confidence            47999999999999999998631 68999999999999887753211100            00   012   2232  5


Q ss_pred             ccCcEEEEeccC
Q 011654           77 AEADIVFVSVNT   88 (480)
Q Consensus        77 ~~aDvVii~Vpt   88 (480)
                      .++|+||+|+|.
T Consensus       104 ~~ad~vi~~~~~  115 (183)
T 3c85_A          104 GHVKLVLLAMPH  115 (183)
T ss_dssp             CCCCEEEECCSS
T ss_pred             CCCCEEEEeCCC
Confidence            689999999874

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=98.06  E-value=1.3e-05  Score=79.34  Aligned_cols=98  Identities=11%  Similarity=0.051  Sum_probs=71.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.+|..++..|+...+..+|.+||+++++.+.+.+.           + .. ..-.+. .+++++++ ++|+
T Consensus       126 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~-----------~-~~-~~~~~~-~~~~~e~v-~aDv  190 (322)
T 1omo_A          126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSY-----------C-ED-RGISAS-VQPAEEAS-RCDV  190 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHH-----------H-HH-TTCCEE-ECCHHHHT-SSSE
T ss_pred             CEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHH-----------H-Hh-cCceEE-ECCHHHHh-CCCE
Confidence            58999999999999999998743367899999999998887642           0 00 001245 67888888 9999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      |++|+|+....        .+           ...++++++|+..++..|+.
T Consensus       191 Vi~aTp~~~pv--------~~-----------~~~l~~G~~V~~ig~~~p~~  223 (322)
T 1omo_A          191 LVTTTPSRKPV--------VK-----------AEWVEEGTHINAIGADGPGK  223 (322)
T ss_dssp             EEECCCCSSCC--------BC-----------GGGCCTTCEEEECSCCSTTC
T ss_pred             EEEeeCCCCce--------ec-----------HHHcCCCeEEEECCCCCCCc
Confidence            99998853210        01           14578899999887776663

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=98.05  E-value=7.1e-06  Score=81.46  Aligned_cols=71  Identities=15%  Similarity=0.168  Sum_probs=51.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~   78 (480)
                      +||+|||+|.||..++..|.+. ++.+++ ++|+++++.+.+.+..                 +.-+..+|+++.++  +
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~-~~~~~~av~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~~   67 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLA-GNGEVVAVSSRTLESAQAFANKY-----------------HLPKAYDKLEDMLADES   67 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHH-CSEEEEEEECSCSSTTCC---CC-----------------CCSCEESCHHHHHTCTT
T ss_pred             eEEEEEechHHHHHHHHHHHhC-CCcEEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHHHhcCCC
Confidence            5899999999999999998875 366655 6799987765544320                 11135688888877  7


Q ss_pred             CcEEEEeccCCC
Q 011654           79 ADIVFVSVNTPT   90 (480)
Q Consensus        79 aDvVii~Vptp~   90 (480)
                      +|+|++|+|+..
T Consensus        68 ~D~V~i~tp~~~   79 (329)
T 3evn_A           68 IDVIYVATINQD   79 (329)
T ss_dssp             CCEEEECSCGGG
T ss_pred             CCEEEECCCcHH
Confidence            899999988643

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=98.05  E-value=1.9e-05  Score=79.46  Aligned_cols=111  Identities=16%  Similarity=0.211  Sum_probs=72.0

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEV-AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--   77 (480)
                      ++||+|||+|.||..++..|... +++++ .++|+++++.+.+.+... +             .......+|+++.++  
T Consensus         6 ~~~vgiiG~G~ig~~~~~~l~~~-~~~~lv~v~d~~~~~~~~~a~~~~-~-------------~~~~~~~~~~~~ll~~~   70 (362)
T 1ydw_A            6 QIRIGVMGCADIARKVSRAIHLA-PNATISGVASRSLEKAKAFATANN-Y-------------PESTKIHGSYESLLEDP   70 (362)
T ss_dssp             CEEEEEESCCTTHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHHTT-C-------------CTTCEEESSHHHHHHCT
T ss_pred             ceEEEEECchHHHHHHHHHHhhC-CCcEEEEEEcCCHHHHHHHHHHhC-C-------------CCCCeeeCCHHHHhcCC
Confidence            36899999999999999988875 46776 478999998877654210 0             002356788888775  


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC--ccchHHHHHHHHHhc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV--PVKTAEAIEKILTHN  144 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv--~~gt~~~l~~~l~~~  144 (480)
                      ++|+|++|+|+..+               .+.   +...+..|+.|+++..+  .....++|.+..++.
T Consensus        71 ~~D~V~i~tp~~~h---------------~~~---~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~  121 (362)
T 1ydw_A           71 EIDALYVPLPTSLH---------------VEW---AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEAN  121 (362)
T ss_dssp             TCCEEEECCCGGGH---------------HHH---HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTT
T ss_pred             CCCEEEEcCChHHH---------------HHH---HHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHc
Confidence            58999999875432               122   22335567767766532  333344555555554

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=98.05  E-value=1.7e-05  Score=82.63  Aligned_cols=91  Identities=15%  Similarity=0.055  Sum_probs=68.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |.+|++||+++.+.......                   +.++ .+++++++.+|+
T Consensus       278 ktVgIIG~G~IG~~vA~~l~~~--G~~V~v~d~~~~~~~~a~~~-------------------G~~~-~~l~ell~~aDi  335 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSLRGL--GATVWVTEIDPICALQAAME-------------------GYRV-VTMEYAADKADI  335 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSCHHHHHHHHTT-------------------TCEE-CCHHHHTTTCSE
T ss_pred             CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCChHhHHHHHHc-------------------CCEe-CCHHHHHhcCCE
Confidence            5899999999999999999876  99999999999864222211                   1233 468888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCcc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPV  131 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~  131 (480)
                      |++++.|..         ..+        +...+.++++.+||+.+..+.
T Consensus       336 Vi~~~~t~~---------lI~--------~~~l~~MK~gAilINvgrg~v  368 (494)
T 3d64_A          336 FVTATGNYH---------VIN--------HDHMKAMRHNAIVCNIGHFDS  368 (494)
T ss_dssp             EEECSSSSC---------SBC--------HHHHHHCCTTEEEEECSSSSC
T ss_pred             EEECCCccc---------ccC--------HHHHhhCCCCcEEEEcCCCcc
Confidence            999985431         112        234456899999999887654

>1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A

Probab=98.04  E-value=3.6e-05  Score=75.61  Aligned_cols=117  Identities=22%  Similarity=0.300  Sum_probs=73.0

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCC--eEEEEeC--CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKI--EVAVVDI--SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~--~V~~~D~--~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      |||+|+| +|.+|.+++..|+.+  |+  ++.++|+  ++++++....        ++.+...  .....+++.+..+++
T Consensus         1 mKI~IiGAaG~vG~~l~~~L~~~--~~~~el~L~Di~~~~~~~~~~~~--------dl~~~~~--~~~~~~v~~~~~~a~   68 (303)
T 1o6z_A            1 TKVSVVGAAGTVGAAAGYNIALR--DIADEVVFVDIPDKEDDTVGQAA--------DTNHGIA--YDSNTRVRQGGYEDT   68 (303)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCCSEEEEECCGGGHHHHHHHHH--------HHHHHHT--TTCCCEEEECCGGGG
T ss_pred             CEEEEECCCChHHHHHHHHHHhC--CCCCEEEEEcCCCChhhHHHHHH--------HHHHHHh--hCCCcEEEeCCHHHh
Confidence            7999999 999999999999887  54  7999999  8876543221        1111110  012233332335679


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      +++|+||++.+.|... +   ....|     ...+++.++.+.++. ++.+|++ +|.|.++.-.
T Consensus        69 ~~aDvVi~~ag~~~~~-g---~~r~dl~~~N~~i~~~i~~~i~~~~-p~~~viv-~SNPv~~~~~  127 (303)
T 1o6z_A           69 AGSDVVVITAGIPRQP-G---QTRIDLAGDNAPIMEDIQSSLDEHN-DDYISLT-TSNPVDLLNR  127 (303)
T ss_dssp             TTCSEEEECCCCCCCT-T---CCHHHHHHHHHHHHHHHHHHHHTTC-SCCEEEE-CCSSHHHHHH
T ss_pred             CCCCEEEEcCCCCCCC-C---CCHHHHHHHHHHHHHHHHHHHHHHC-CCcEEEE-eCChHHHHHH
Confidence            9999999999876532 1   00112     234555666666664 4555554 6888876443

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=98.04  E-value=1.2e-05  Score=79.75  Aligned_cols=69  Identities=25%  Similarity=0.233  Sum_probs=52.1

Q ss_pred             cEEEEEcCChhHHHH-HHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654            2 VKICCIGAGYVGGPT-MAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~l-A~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--   77 (480)
                      |||+|||+|.||..+ +..|.+.  +++++ ++|+++++.+.+.+..                 +.....+|+++.++  
T Consensus         1 ~~vgiiG~G~~g~~~~~~~l~~~--~~~~vav~d~~~~~~~~~~~~~-----------------g~~~~~~~~~~~l~~~   61 (332)
T 2glx_A            1 NRWGLIGASTIAREWVIGAIRAT--GGEVVSMMSTSAERGAAYATEN-----------------GIGKSVTSVEELVGDP   61 (332)
T ss_dssp             CEEEEESCCHHHHHTHHHHHHHT--TCEEEEEECSCHHHHHHHHHHT-----------------TCSCCBSCHHHHHTCT
T ss_pred             CeEEEEcccHHHHHhhhHHhhcC--CCeEEEEECCCHHHHHHHHHHc-----------------CCCcccCCHHHHhcCC
Confidence            699999999999998 7777764  88876 7899999887765420                 11123567888775  


Q ss_pred             cCcEEEEeccCC
Q 011654           78 EADIVFVSVNTP   89 (480)
Q Consensus        78 ~aDvVii~Vptp   89 (480)
                      ++|+|++|+|+.
T Consensus        62 ~~D~V~i~tp~~   73 (332)
T 2glx_A           62 DVDAVYVSTTNE   73 (332)
T ss_dssp             TCCEEEECSCGG
T ss_pred             CCCEEEEeCChh
Confidence            599999998854

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.01  E-value=1.3e-05  Score=79.10  Aligned_cols=98  Identities=17%  Similarity=0.135  Sum_probs=69.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+|+|||+|.||..++..|....+..+|++||++  +.+.+.+.           +-... ...+..+ +++++++++|+
T Consensus       122 ~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~-----------l~~~~-g~~~~~~-~~~eav~~aDI  186 (313)
T 3hdj_A          122 SVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY--ASPEILER-----------IGRRC-GVPARMA-APADIAAQADI  186 (313)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHH-----------HHHHH-TSCEEEC-CHHHHHHHCSE
T ss_pred             cEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHH-----------HHHhc-CCeEEEe-CHHHHHhhCCE
Confidence            4799999999999999999875446789999999  44444321           00000 1234566 89999999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      |++|+|...          +-       +.  .+.+++|++|+..++..|+.
T Consensus       187 Vi~aT~s~~----------pv-------l~--~~~l~~G~~V~~vGs~~p~~  219 (313)
T 3hdj_A          187 VVTATRSTT----------PL-------FA--GQALRAGAFVGAIGSSLPHT  219 (313)
T ss_dssp             EEECCCCSS----------CS-------SC--GGGCCTTCEEEECCCSSTTC
T ss_pred             EEEccCCCC----------cc-------cC--HHHcCCCcEEEECCCCCCch
Confidence            999987531          11       11  24688999999888877764

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=98.00  E-value=4e-05  Score=71.26  Aligned_cols=41  Identities=12%  Similarity=0.123  Sum_probs=38.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |||.|+|+|.+|..+|..|.+.  |++|+++|+|+++++.+.+
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~l~~   41 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSR--KYGVVIINKDRELCEEFAK   41 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCeEEEEECCHHHHHHHHH
Confidence            8999999999999999999998  9999999999999988763

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=98.00  E-value=3.1e-05  Score=76.26  Aligned_cols=116  Identities=19%  Similarity=0.235  Sum_probs=72.7

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHc-CCCCeEEEEeCCHH---HHHHHHCCCCCCCCCChHHHHHhhcCCCEEE--ecCHHH
Q 011654            2 VKICCIG-AGYVGGPTMAVIALK-CPKIEVAVVDISVS---RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF--STDIEK   74 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~-~~G~~V~~~D~~~~---~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~--t~d~~~   74 (480)
                      |||+||| +|+||.++|..|+.+ .-..++.++|+++.   ....++..  +.             .-.++.  +++..+
T Consensus         1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~--~~-------------~~~v~~~~~~~~~~   65 (312)
T 3hhp_A            1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHI--PT-------------AVKIKGFSGEDATP   65 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTS--CS-------------SEEEEEECSSCCHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCC--CC-------------CceEEEecCCCcHH
Confidence            8999999 899999999999874 22468999999861   12222221  00             012332  124445


Q ss_pred             HhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHH
Q 011654           75 HVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAI  137 (480)
Q Consensus        75 a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l  137 (480)
                      ++++||+||++.+.|..+.   .++    ..+...+++..+.+.++.+ +.++++- |.|..+.-.+
T Consensus        66 ~~~~aDivii~ag~~rkpG---~~R~dll~~N~~I~~~i~~~i~~~~p-~a~vlvv-tNPvd~~t~~  127 (312)
T 3hhp_A           66 ALEGADVVLISAGVARKPG---MDRSDLFNVNAGIVKNLVQQVAKTCP-KACIGII-TNPVNTTVAI  127 (312)
T ss_dssp             HHTTCSEEEECCSCSCCTT---CCHHHHHHHHHHHHHHHHHHHHHHCT-TSEEEEC-SSCHHHHHHH
T ss_pred             HhCCCCEEEEeCCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHHHCC-CcEEEEe-cCcchhHHHH
Confidence            6999999999998876431   111    1134556667777888765 4445443 5787765444

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=97.99  E-value=1.6e-05  Score=79.07  Aligned_cols=72  Identities=17%  Similarity=0.257  Sum_probs=53.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCC--Ce-EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPK--IE-VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G--~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      ++||+|||+|.||..++..|.+. ++  ++ |.++|+++++.+.+.+..                 +.-+..+|+++.++
T Consensus         2 ~~rigiiG~G~ig~~~~~~l~~~-~~~~~~l~av~d~~~~~a~~~a~~~-----------------~~~~~~~~~~~ll~   63 (334)
T 3ohs_X            2 ALRWGIVSVGLISSDFTAVLQTL-PRSEHQVVAVAARDLSRAKEFAQKH-----------------DIPKAYGSYEELAK   63 (334)
T ss_dssp             CEEEEEECCSHHHHHHHHHHTTS-CTTTEEEEEEECSSHHHHHHHHHHH-----------------TCSCEESSHHHHHH
T ss_pred             ccEEEEECchHHHHHHHHHHHhC-CCCCeEEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHHHhc
Confidence            36999999999999999988764 22  35 456899999888776420                 11135688888776


Q ss_pred             --cCcEEEEeccCCC
Q 011654           78 --EADIVFVSVNTPT   90 (480)
Q Consensus        78 --~aDvVii~Vptp~   90 (480)
                        +.|+|+||+|+..
T Consensus        64 ~~~vD~V~i~tp~~~   78 (334)
T 3ohs_X           64 DPNVEVAYVGTQHPQ   78 (334)
T ss_dssp             CTTCCEEEECCCGGG
T ss_pred             CCCCCEEEECCCcHH
Confidence              6999999988653

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=97.96  E-value=4.1e-05  Score=76.70  Aligned_cols=68  Identities=21%  Similarity=0.347  Sum_probs=51.4

Q ss_pred             cEEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc-
Q 011654            2 VKICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE-   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~-   78 (480)
                      +||+|||+|.||.. .+..+.+. ++.+|+ ++|+++++.+   +.                 .++..+.+|+++.+++ 
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~~~~-~~~~l~av~d~~~~~~~---~~-----------------~~~~~~~~~~~~ll~~~   66 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLIMGT-PGLELAGVSSSDASKVH---AD-----------------WPAIPVVSDPQMLFNDP   66 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTS-TTEEEEEEECSCHHHHH---TT-----------------CSSCCEESCHHHHHHCS
T ss_pred             ceEEEECCCHHHHHHHHHHHhhC-CCcEEEEEECCCHHHHH---hh-----------------CCCCceECCHHHHhcCC
Confidence            58999999999997 67667654 578876 7899998775   11                 0234567899988764 


Q ss_pred             -CcEEEEeccCCC
Q 011654           79 -ADIVFVSVNTPT   90 (480)
Q Consensus        79 -aDvVii~Vptp~   90 (480)
                       .|+|+||+|+..
T Consensus        67 ~vD~V~i~tp~~~   79 (352)
T 3kux_A           67 SIDLIVIPTPNDT   79 (352)
T ss_dssp             SCCEEEECSCTTT
T ss_pred             CCCEEEEeCChHH
Confidence             899999988754

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=97.96  E-value=1.5e-05  Score=79.25  Aligned_cols=70  Identities=13%  Similarity=0.131  Sum_probs=52.1

Q ss_pred             cEEEEEcCChhHH-HHHHHHHHcCCCCeE-EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654            2 VKICCIGAGYVGG-PTMAVIALKCPKIEV-AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--   77 (480)
Q Consensus         2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--   77 (480)
                      +||+|||+|.+|. .++..|...  +++| .++|+++++.+.+.+..                 +...+.+|+++.++  
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l~~~--~~~lvav~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~   65 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQLIDA--GAELAGVFESDSDNRAKFTSLF-----------------PSVPFAASAEQLITDA   65 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHHHHT--TCEEEEEECSCTTSCHHHHHHS-----------------TTCCBCSCHHHHHTCT
T ss_pred             cEEEEECCChHHHHHhhhhhcCC--CcEEEEEeCCCHHHHHHHHHhc-----------------CCCcccCCHHHHhhCC
Confidence            6899999999996 677777654  8885 57899998777665421                 12345678888775  


Q ss_pred             cCcEEEEeccCCC
Q 011654           78 EADIVFVSVNTPT   90 (480)
Q Consensus        78 ~aDvVii~Vptp~   90 (480)
                      +.|+|+||+|+..
T Consensus        66 ~~D~V~i~tp~~~   78 (336)
T 2p2s_A           66 SIDLIACAVIPCD   78 (336)
T ss_dssp             TCCEEEECSCGGG
T ss_pred             CCCEEEEeCChhh
Confidence            6899999988643

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=97.94  E-value=3.9e-05  Score=77.07  Aligned_cols=68  Identities=10%  Similarity=0.208  Sum_probs=50.7

Q ss_pred             cEEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654            2 VKICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--   77 (480)
                      +||+|||+|.||.. .+..+.+. ++++|+ ++|+++++...--                    +...+.+|+++.++  
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~~--------------------~~~~~~~~~~~ll~~~   64 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLLDVL-DEYQISKIMTSRTEEVKRDF--------------------PDAEVVHELEEITNDP   64 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTC-TTEEEEEEECSCHHHHHHHC--------------------TTSEEESSTHHHHTCT
T ss_pred             ceEEEEccCHHHHHHHHHHHhhC-CCeEEEEEEcCCHHHHHhhC--------------------CCCceECCHHHHhcCC
Confidence            58999999999997 56666553 578875 6799987643211                    23466788888876  


Q ss_pred             cCcEEEEeccCCC
Q 011654           78 EADIVFVSVNTPT   90 (480)
Q Consensus        78 ~aDvVii~Vptp~   90 (480)
                      +.|+|+||+|+..
T Consensus        65 ~vD~V~i~tp~~~   77 (358)
T 3gdo_A           65 AIELVIVTTPSGL   77 (358)
T ss_dssp             TCCEEEECSCTTT
T ss_pred             CCCEEEEcCCcHH
Confidence            7899999988754

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=97.93  E-value=1.9e-05  Score=80.29  Aligned_cols=71  Identities=8%  Similarity=0.140  Sum_probs=55.1

Q ss_pred             CcEEEEEcCC-hhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-
Q 011654            1 MVKICCIGAG-YVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-   77 (480)
Q Consensus         1 imkI~VIGlG-~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-   77 (480)
                      ++||+|||+| .||..++..|.+. ++.+++ ++|+++++.+.+.+.                  -++...+|+++.++ 
T Consensus         2 ~~rigiiG~G~~~~~~~~~~l~~~-~~~~l~av~d~~~~~~~~~a~~------------------~g~~~~~~~~ell~~   62 (387)
T 3moi_A            2 KIRFGICGLGFAGSVLMAPAMRHH-PDAQIVAACDPNEDVRERFGKE------------------YGIPVFATLAEMMQH   62 (387)
T ss_dssp             CEEEEEECCSHHHHTTHHHHHHHC-TTEEEEEEECSCHHHHHHHHHH------------------HTCCEESSHHHHHHH
T ss_pred             ceEEEEEeCCHHHHHHHHHHHHhC-CCeEEEEEEeCCHHHHHHHHHH------------------cCCCeECCHHHHHcC
Confidence            3699999999 9999999998875 467766 689999988776542                  02345788888776 


Q ss_pred             -cCcEEEEeccCCC
Q 011654           78 -EADIVFVSVNTPT   90 (480)
Q Consensus        78 -~aDvVii~Vptp~   90 (480)
                       +.|+|+||+|+..
T Consensus        63 ~~vD~V~i~tp~~~   76 (387)
T 3moi_A           63 VQMDAVYIASPHQF   76 (387)
T ss_dssp             SCCSEEEECSCGGG
T ss_pred             CCCCEEEEcCCcHH
Confidence             4899999988643

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=97.92  E-value=4.5e-05  Score=79.58  Aligned_cols=90  Identities=16%  Similarity=0.123  Sum_probs=67.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.||..+|..+...  |.+|+++|+++++.+...+.                   +... .+++++++.+|+
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~--Ga~Viv~d~~~~~~~~A~~~-------------------Ga~~-~~l~e~l~~aDv  332 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQ--GARVSVTEIDPINALQAMME-------------------GFDV-VTVEEAIGDADI  332 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEE-CCHHHHGGGCSE
T ss_pred             CEEEEEccCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHc-------------------CCEE-ecHHHHHhCCCE
Confidence            4799999999999999999887  89999999999887655431                   1222 456777889999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVP  130 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~  130 (480)
                      ||+|++++.-         .+        .+..+.++++.+|++.+..+
T Consensus       333 Vi~atgt~~~---------i~--------~~~l~~mk~ggilvnvG~~~  364 (494)
T 3ce6_A          333 VVTATGNKDI---------IM--------LEHIKAMKDHAILGNIGHFD  364 (494)
T ss_dssp             EEECSSSSCS---------BC--------HHHHHHSCTTCEEEECSSSG
T ss_pred             EEECCCCHHH---------HH--------HHHHHhcCCCcEEEEeCCCC
Confidence            9999876421         11        13345578899998877644

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=97.92  E-value=3.7e-05  Score=75.55  Aligned_cols=88  Identities=17%  Similarity=0.324  Sum_probs=54.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +||+|||+|.||..++..|.+. ++++++ ++|+++++.+.  .|. +                 ....+++.+ ..++|
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~-~~~elvav~d~~~~~~~~--~g~-~-----------------~~~~~~l~~-~~~~D   67 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREA-PDFEIAGIVRRNPAEVPF--ELQ-P-----------------FRVVSDIEQ-LESVD   67 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC-TTEEEEEEECC---------CCT-T-----------------SCEESSGGG-SSSCC
T ss_pred             CEEEEECChHHHHHHHHHHhcC-CCCEEEEEEcCCHHHHHH--cCC-C-----------------cCCHHHHHh-CCCCC
Confidence            5899999999999999999874 578887 68999887654  111 0                 112345544 37899


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv  129 (480)
                      +|++|+|+..+                  .+.+...++.|..|++++.+
T Consensus        68 vViiatp~~~h------------------~~~~~~al~aG~~Vi~ekP~   98 (304)
T 3bio_A           68 VALVCSPSREV------------------ERTALEILKKGICTADSFDI   98 (304)
T ss_dssp             EEEECSCHHHH------------------HHHHHHHHTTTCEEEECCCC
T ss_pred             EEEECCCchhh------------------HHHHHHHHHcCCeEEECCCC
Confidence            99999874321                  22233445567878877643

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=97.91  E-value=1.4e-05  Score=80.62  Aligned_cols=71  Identities=14%  Similarity=0.180  Sum_probs=52.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||.|+|+|.||..+|..|++   .++|+++|++.++++.+++....+.-             .+.-..++.+.++++|+
T Consensus        17 mkilvlGaG~vG~~~~~~L~~---~~~v~~~~~~~~~~~~~~~~~~~~~~-------------d~~d~~~l~~~~~~~Dv   80 (365)
T 3abi_A           17 MKVLILGAGNIGRAIAWDLKD---EFDVYIGDVNNENLEKVKEFATPLKV-------------DASNFDKLVEVMKEFEL   80 (365)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT---TSEEEEEESCHHHHHHHTTTSEEEEC-------------CTTCHHHHHHHHTTCSE
T ss_pred             cEEEEECCCHHHHHHHHHHhc---CCCeEEEEcCHHHHHHHhccCCcEEE-------------ecCCHHHHHHHHhCCCE
Confidence            899999999999999999976   58999999999999988753211100             00001224556789999


Q ss_pred             EEEeccC
Q 011654           82 VFVSVNT   88 (480)
Q Consensus        82 Vii~Vpt   88 (480)
                      ||.|+|.
T Consensus        81 Vi~~~p~   87 (365)
T 3abi_A           81 VIGALPG   87 (365)
T ss_dssp             EEECCCG
T ss_pred             EEEecCC
Confidence            9999984

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.90  E-value=3.1e-05  Score=79.05  Aligned_cols=90  Identities=17%  Similarity=0.109  Sum_probs=66.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.+|.++|..|...  |.+|+++|+++.+.......                   +... .+++++++.+|+
T Consensus       212 ktVgIiG~G~IG~~vA~~Lka~--Ga~Viv~D~~p~~a~~A~~~-------------------G~~~-~sL~eal~~ADV  269 (436)
T 3h9u_A          212 KTACVCGYGDVGKGCAAALRGF--GARVVVTEVDPINALQAAME-------------------GYQV-LLVEDVVEEAHI  269 (436)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEE-CCHHHHTTTCSE
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC--CCEEEEECCChhhhHHHHHh-------------------CCee-cCHHHHHhhCCE
Confidence            4799999999999999999987  99999999998765433321                   2232 478899999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVP  130 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~  130 (480)
                      |+++.++..-         .+        .+..+.++++.+|++.+-.+
T Consensus       270 Vilt~gt~~i---------I~--------~e~l~~MK~gAIVINvgRg~  301 (436)
T 3h9u_A          270 FVTTTGNDDI---------IT--------SEHFPRMRDDAIVCNIGHFD  301 (436)
T ss_dssp             EEECSSCSCS---------BC--------TTTGGGCCTTEEEEECSSSG
T ss_pred             EEECCCCcCc---------cC--------HHHHhhcCCCcEEEEeCCCC
Confidence            9987654321         11        12345678999999876443

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=97.89  E-value=2.2e-05  Score=76.88  Aligned_cols=113  Identities=16%  Similarity=0.126  Sum_probs=73.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|.|||+|.||.+++..|++.  |. +|++++|++++.+.+.+.....             .+.....+++.+.+.++|
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~--G~~~V~v~nR~~~ka~~la~~~~~~-------------~~~~~~~~~~~~~~~~aD  206 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLST--AAERIDMANRTVEKAERLVREGDER-------------RSAYFSLAEAETRLAEYD  206 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCSEEEEECSSHHHHHHHHHHSCSS-------------SCCEECHHHHHHTGGGCS
T ss_pred             CEEEEECcHHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHhhhc-------------cCceeeHHHHHhhhccCC
Confidence            5799999999999999999988  87 9999999999988776421000             001111124555678999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      +||.|+|.+...+.    ..+.+   .      ...++++.+|++.++.|..| + +.+..++.
T Consensus       207 ivIn~t~~~~~~~~----~~~~i---~------~~~l~~~~~v~D~~y~P~~T-~-ll~~A~~~  255 (297)
T 2egg_A          207 IIINTTSVGMHPRV----EVQPL---S------LERLRPGVIVSDIIYNPLET-K-WLKEAKAR  255 (297)
T ss_dssp             EEEECSCTTCSSCC----SCCSS---C------CTTCCTTCEEEECCCSSSSC-H-HHHHHHHT
T ss_pred             EEEECCCCCCCCCC----CCCCC---C------HHHcCCCCEEEEcCCCCCCC-H-HHHHHHHC
Confidence            99999987643200    00000   0      13467889999998865544 3 43444443

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=97.88  E-value=6.1e-05  Score=77.97  Aligned_cols=76  Identities=18%  Similarity=0.184  Sum_probs=54.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec----CHHHHh
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST----DIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~----d~~~a~   76 (480)
                      +||+|||+|.||...+..|.+. ++.+|+ ++|+++++.+.+.+.            +.+..-......+    |+++.+
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~-~~~~lvav~d~~~~~~~~~a~~------------~~~~g~~~~~~~~~~~~~~~~ll   87 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARR-DDVEIVAFADPDPYMVGRAQEI------------LKKNGKKPAKVFGNGNDDYKNML   87 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC-TTEEEEEEECSCHHHHHHHHHH------------HHHTTCCCCEEECSSTTTHHHHT
T ss_pred             ceEEEEecCHHHHHHHHHHHhC-CCcEEEEEEeCCHHHHHHHHHH------------HHhcCCCCCceeccCCCCHHHHh
Confidence            5899999999999999888864 577764 789999988776531            0000001134556    888877


Q ss_pred             c--cCcEEEEeccCCC
Q 011654           77 A--EADIVFVSVNTPT   90 (480)
Q Consensus        77 ~--~aDvVii~Vptp~   90 (480)
                      +  +.|+|+||+|+..
T Consensus        88 ~~~~vD~V~i~tp~~~  103 (444)
T 2ixa_A           88 KDKNIDAVFVSSPWEW  103 (444)
T ss_dssp             TCTTCCEEEECCCGGG
T ss_pred             cCCCCCEEEEcCCcHH
Confidence            6  5899999988643

>3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A*

Probab=97.84  E-value=0.00013  Score=76.06  Aligned_cols=78  Identities=18%  Similarity=0.189  Sum_probs=52.9

Q ss_pred             cEEEEEcCChhHHHHH--HHHHHc--C--CCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHH
Q 011654            2 VKICCIGAGYVGGPTM--AVIALK--C--PKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEK   74 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA--~~La~~--~--~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~   74 (480)
                      |||+|||+|.+|.+..  ..++..  .  .+.+++++|+++++.+....        .+..+.... ..-+++.|+|.++
T Consensus         1 mKI~iIGaGs~~~t~~l~~~~~~~~~l~~~~~ei~L~Di~~~rl~~~~~--------~~~~~~~~~~~~~~i~~t~d~~e   72 (477)
T 3u95_A            1 MKISIVGAGSVRFALQLVEDIAQTDELSREDTHIYLMDVHERRLNASYI--------LARKYVEELNSPVKVVKTESLDE   72 (477)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTCTTTCSTTCEEEEECSCHHHHHHHHH--------HHHHHHHHHTCCCEEEEESCHHH
T ss_pred             CEEEEECCCchhhHHHHHHHHHhhHhcCCCCCEEEEECCCHHHHHHHHH--------HHHHHHHHcCCCeEEEEeCCHHH
Confidence            8999999999987632  223321  1  13579999999998765332        011222221 1235788999999


Q ss_pred             HhccCcEEEEecc
Q 011654           75 HVAEADIVFVSVN   87 (480)
Q Consensus        75 a~~~aDvVii~Vp   87 (480)
                      |+++||+||+++.
T Consensus        73 Al~gAD~Vi~~~g   85 (477)
T 3u95_A           73 AIEGADFIINTAY   85 (477)
T ss_dssp             HHTTCSEEEECCC
T ss_pred             HhCCCCEEEECcc
Confidence            9999999999973

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=97.82  E-value=0.00015  Score=72.11  Aligned_cols=106  Identities=12%  Similarity=0.198  Sum_probs=73.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|||||+|.+|..+|..+..-  |.+|++||+.+....  ..                   ....+ .++++.++.||+
T Consensus       142 ~tvGIiG~G~IG~~va~~~~~f--g~~v~~~d~~~~~~~--~~-------------------~~~~~-~~l~ell~~sDi  197 (334)
T 3kb6_A          142 LTLGVIGTGRIGSRVAMYGLAF--GMKVLCYDVVKREDL--KE-------------------KGCVY-TSLDELLKESDV  197 (334)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCHHH--HH-------------------TTCEE-CCHHHHHHHCSE
T ss_pred             cEEEEECcchHHHHHHHhhccc--CceeeecCCccchhh--hh-------------------cCcee-cCHHHHHhhCCE
Confidence            4799999999999999999876  999999998643211  11                   12232 478888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |.+++|-.....     .-.|-        +....++++.++|+.|=-+.=..+.|.+.|++.
T Consensus       198 vslh~Plt~~T~-----~li~~--------~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g  247 (334)
T 3kb6_A          198 ISLHVPYTKETH-----HMINE--------ERISLMKDGVYLINTARGKVVDTDALYRAYQRG  247 (334)
T ss_dssp             EEECCCCCTTTT-----TCBCH--------HHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             EEEcCCCChhhc-----cCcCH--------HHHhhcCCCeEEEecCccccccHHHHHHHHHhC
Confidence            999998532211     12332        233558999999987654443455677777653

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=97.81  E-value=6.2e-05  Score=75.00  Aligned_cols=72  Identities=14%  Similarity=0.125  Sum_probs=54.9

Q ss_pred             cEEEEEcCC-hhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654            2 VKICCIGAG-YVGGPTMAVIALKCPKIEV-AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--   77 (480)
Q Consensus         2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--   77 (480)
                      +||+|||+| .+|...+..|.+..++.++ .++|+++++.+.+.+..                 +...+.+|+++.++  
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~-----------------~~~~~~~~~~~ll~~~   81 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV-----------------GNPAVFDSYEELLESG   81 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH-----------------SSCEEESCHHHHHHSS
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHh-----------------CCCcccCCHHHHhcCC
Confidence            589999999 8999999888764246776 57899999888766420                 12256788998775  


Q ss_pred             cCcEEEEeccCCC
Q 011654           78 EADIVFVSVNTPT   90 (480)
Q Consensus        78 ~aDvVii~Vptp~   90 (480)
                      +.|+|+||+|+..
T Consensus        82 ~vD~V~i~tp~~~   94 (340)
T 1zh8_A           82 LVDAVDLTLPVEL   94 (340)
T ss_dssp             CCSEEEECCCGGG
T ss_pred             CCCEEEEeCCchH
Confidence            6899999987643

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=97.80  E-value=3e-05  Score=77.88  Aligned_cols=112  Identities=13%  Similarity=0.070  Sum_probs=74.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-cCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-EAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-~aD   80 (480)
                      ++|+|+|+|.||..+|..|...  |.+|+++|+++++++.+.+.               .  + .++. +.++.+. +||
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~--GakVvv~D~~~~~l~~~a~~---------------~--g-a~~v-~~~~ll~~~~D  232 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTE--GAKLVVTDVNKAAVSAAVAE---------------E--G-ADAV-APNAIYGVTCD  232 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHH---------------H--C-CEEC-CGGGTTTCCCS
T ss_pred             CEEEEECchHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHH---------------c--C-CEEE-ChHHHhccCCc
Confidence            5799999999999999999998  99999999999988766541               0  1 1222 2233343 899


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      +++.|....          ..+..    .++    .+  +..+|.+++..|.+.++..++|++.+      +.+.|..+.
T Consensus       233 Ivip~a~~~----------~I~~~----~~~----~l--g~~iV~e~An~p~t~~ea~~~L~~~G------i~~~Pd~~~  286 (364)
T 1leh_A          233 IFAPCALGA----------VLNDF----TIP----QL--KAKVIAGSADNQLKDPRHGKYLHELG------IVYAPDYVI  286 (364)
T ss_dssp             EEEECSCSC----------CBSTT----HHH----HC--CCSEECCSCSCCBSSHHHHHHHHHHT------CEECCHHHH
T ss_pred             EeeccchHH----------HhCHH----HHH----hC--CCcEEEeCCCCCcccHHHHHHHHhCC------CEEecceee
Confidence            999885321          12211    122    23  33456667777777656667777764      456776543

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=97.79  E-value=3.4e-05  Score=79.62  Aligned_cols=73  Identities=12%  Similarity=0.174  Sum_probs=53.3

Q ss_pred             cEEEEEcCChhHH-HHHHHHHHcCCCCeE-EEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEecCHHHHhc-
Q 011654            2 VKICCIGAGYVGG-PTMAVIALKCPKIEV-AVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-   77 (480)
Q Consensus         2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-   77 (480)
                      +||+|||+|.||. .++..|.+. +++++ .++|+++++.+.+.+.. .+              ...+...+|+++.++ 
T Consensus        84 irigiIG~G~~g~~~~~~~l~~~-~~~~lvav~d~~~~~~~~~a~~~g~~--------------~~~~~~~~~~~~ll~~  148 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGFAGC-QHSRIEALVSGNAEKAKIVAAEYGVD--------------PRKIYDYSNFDKIAKD  148 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTC-SSEEEEEEECSCHHHHHHHHHHTTCC--------------GGGEECSSSGGGGGGC
T ss_pred             eEEEEECCcHHHHHHHHHHHhhC-CCcEEEEEEcCCHHHHHHHHHHhCCC--------------cccccccCCHHHHhcC
Confidence            6899999999997 888888764 36775 57899999887765421 00              001345678888776 


Q ss_pred             -cCcEEEEeccCC
Q 011654           78 -EADIVFVSVNTP   89 (480)
Q Consensus        78 -~aDvVii~Vptp   89 (480)
                       ++|+|+||+|+.
T Consensus       149 ~~vD~V~iatp~~  161 (433)
T 1h6d_A          149 PKIDAVYIILPNS  161 (433)
T ss_dssp             TTCCEEEECSCGG
T ss_pred             CCCCEEEEcCCch
Confidence             789999998864

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=97.76  E-value=7.4e-05  Score=76.69  Aligned_cols=73  Identities=14%  Similarity=0.226  Sum_probs=52.0

Q ss_pred             cEEEEEcCCh---hHHHHHHHHHHcCCCCeEE--EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGY---VGGPTMAVIALKCPKIEVA--VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~---~G~~lA~~La~~~~G~~V~--~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      +||+|||+|.   ||...+..+... ++++++  ++|+++++.+.+.+..      ++         ...++.+|+++.+
T Consensus        38 ~rvgiiG~G~~~~ig~~h~~~~~~~-~~~~lva~v~d~~~~~a~~~a~~~------g~---------~~~~~~~~~~~ll  101 (417)
T 3v5n_A           38 IRLGMVGGGSGAFIGAVHRIAARLD-DHYELVAGALSSTPEKAEASGREL------GL---------DPSRVYSDFKEMA  101 (417)
T ss_dssp             EEEEEESCC--CHHHHHHHHHHHHT-SCEEEEEEECCSSHHHHHHHHHHH------TC---------CGGGBCSCHHHHH
T ss_pred             ceEEEEcCCCchHHHHHHHHHHhhC-CCcEEEEEEeCCCHHHHHHHHHHc------CC---------CcccccCCHHHHH
Confidence            4899999998   999988887765 357775  5799999888766420      00         0013457888877


Q ss_pred             cc-------CcEEEEeccCCC
Q 011654           77 AE-------ADIVFVSVNTPT   90 (480)
Q Consensus        77 ~~-------aDvVii~Vptp~   90 (480)
                      ++       .|+|+||+|+..
T Consensus       102 ~~~~~~~~~vD~V~I~tp~~~  122 (417)
T 3v5n_A          102 IREAKLKNGIEAVAIVTPNHV  122 (417)
T ss_dssp             HHHHHCTTCCSEEEECSCTTS
T ss_pred             hcccccCCCCcEEEECCCcHH
Confidence            65       899999988754

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=97.76  E-value=4.1e-05  Score=77.36  Aligned_cols=110  Identities=10%  Similarity=0.151  Sum_probs=70.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .||+|||+| +|...+..+++...+++++ ++|+++++.+++.+.                  -++...+|+++.+++.|
T Consensus         8 ~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~------------------~gv~~~~~~~~l~~~~D   68 (372)
T 4gmf_A            8 QRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHA------------------FGIPLYTSPEQITGMPD   68 (372)
T ss_dssp             EEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHH------------------TTCCEESSGGGCCSCCS
T ss_pred             CEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHH------------------hCCCEECCHHHHhcCCC
Confidence            489999999 6988777776542357776 579999988877652                  12445688998888999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      +++||+|++.+.         .     ...+-....+..|+-|+++--+.+...+++.+..++.
T Consensus        69 ~v~i~~p~~~h~---------~-----~~~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~  118 (372)
T 4gmf_A           69 IACIVVRSTVAG---------G-----AGTQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQ  118 (372)
T ss_dssp             EEEECCC--CTT---------S-----HHHHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCcccc---------h-----hHHHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHc
Confidence            999999987642         0     1111122234467777777655333334444444444

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=97.74  E-value=0.00017  Score=72.46  Aligned_cols=69  Identities=6%  Similarity=0.041  Sum_probs=51.9

Q ss_pred             cEEEEEcCChhHH-HHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc-
Q 011654            2 VKICCIGAGYVGG-PTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE-   78 (480)
Q Consensus         2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~-   78 (480)
                      +||+|||+|.+|. .++..+...  +.+|+ ++|+++++.+.+.+..                 +...+.+|+++.+++ 
T Consensus        27 irvgiiG~G~~~~~~~~~~~~~~--~~~lvav~d~~~~~a~~~a~~~-----------------~~~~~~~~~~~ll~~~   87 (361)
T 3u3x_A           27 LRFAAVGLNHNHIYGQVNCLLRA--GARLAGFHEKDDALAAEFSAVY-----------------ADARRIATAEEILEDE   87 (361)
T ss_dssp             CEEEEECCCSTTHHHHHHHHHHT--TCEEEEEECSCHHHHHHHHHHS-----------------SSCCEESCHHHHHTCT
T ss_pred             cEEEEECcCHHHHHHHHHHhhcC--CcEEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHHHhcCC
Confidence            5899999999995 466666654  88855 6899999988776421                 223467889987764 


Q ss_pred             -CcEEEEeccCC
Q 011654           79 -ADIVFVSVNTP   89 (480)
Q Consensus        79 -aDvVii~Vptp   89 (480)
                       .|+|+||+|+.
T Consensus        88 ~vD~V~I~tp~~   99 (361)
T 3u3x_A           88 NIGLIVSAAVSS   99 (361)
T ss_dssp             TCCEEEECCCHH
T ss_pred             CCCEEEEeCChH
Confidence             89999998764

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=97.74  E-value=4.9e-05  Score=77.46  Aligned_cols=73  Identities=15%  Similarity=0.166  Sum_probs=53.2

Q ss_pred             cEEEEEcCCh---hHHHHHHHHHHcCCCCeEE--EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGY---VGGPTMAVIALKCPKIEVA--VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~---~G~~lA~~La~~~~G~~V~--~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      +||+|||+|.   ||...+..+... ++++++  ++|+++++.+.+.+..      ++         ...++.+|+++.+
T Consensus        13 ~rvgiiG~G~~~~ig~~h~~~~~~~-~~~~lva~v~d~~~~~a~~~a~~~------g~---------~~~~~~~~~~~ll   76 (398)
T 3dty_A           13 IRWAMVGGGSQSQIGYIHRCAALRD-NTFVLVAGAFDIDPIRGSAFGEQL------GV---------DSERCYADYLSMF   76 (398)
T ss_dssp             EEEEEEECCTTCSSHHHHHHHHHGG-GSEEEEEEECCSSHHHHHHHHHHT------TC---------CGGGBCSSHHHHH
T ss_pred             ceEEEEcCCccchhHHHHHHHHhhC-CCeEEEEEEeCCCHHHHHHHHHHh------CC---------CcceeeCCHHHHH
Confidence            4899999999   999999888765 357876  4799999988776421      00         0013467788876


Q ss_pred             cc-------CcEEEEeccCCC
Q 011654           77 AE-------ADIVFVSVNTPT   90 (480)
Q Consensus        77 ~~-------aDvVii~Vptp~   90 (480)
                      ++       .|+|+||+|+..
T Consensus        77 ~~~~~~~~~vD~V~i~tp~~~   97 (398)
T 3dty_A           77 EQEARRADGIQAVSIATPNGT   97 (398)
T ss_dssp             HHHTTCTTCCSEEEEESCGGG
T ss_pred             hcccccCCCCCEEEECCCcHH
Confidence            54       899999988654

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=97.74  E-value=0.00012  Score=74.63  Aligned_cols=89  Identities=15%  Similarity=0.057  Sum_probs=64.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||.|.+|..+|..+...  |.+|+++|+++.+......                   .++++ .+++++++.+|+
T Consensus       248 KTVgVIG~G~IGr~vA~~lraf--Ga~Viv~d~dp~~a~~A~~-------------------~G~~v-v~LeElL~~ADI  305 (464)
T 3n58_A          248 KVAVVCGYGDVGKGSAQSLAGA--GARVKVTEVDPICALQAAM-------------------DGFEV-VTLDDAASTADI  305 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHH-------------------TTCEE-CCHHHHGGGCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCEEEEEeCCcchhhHHHh-------------------cCcee-ccHHHHHhhCCE
Confidence            4799999999999999999887  8999999999875433221                   12333 467888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv  129 (480)
                      |++|.+++-         ..+        ++....++++.+|++.+-.
T Consensus       306 Vv~atgt~~---------lI~--------~e~l~~MK~GAILINvGRg  336 (464)
T 3n58_A          306 VVTTTGNKD---------VIT--------IDHMRKMKDMCIVGNIGHF  336 (464)
T ss_dssp             EEECCSSSS---------SBC--------HHHHHHSCTTEEEEECSSS
T ss_pred             EEECCCCcc---------ccC--------HHHHhcCCCCeEEEEcCCC
Confidence            999876531         112        2334557899999986643

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=97.73  E-value=3.4e-05  Score=74.44  Aligned_cols=74  Identities=22%  Similarity=0.234  Sum_probs=50.6

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      ||||+|+| +|.||..++..+... +++++++ +|++.+...    |.      ++.++.. . ..++.+++|+++++.+
T Consensus         7 mikV~V~Ga~G~MG~~i~~~l~~~-~~~eLv~~~d~~~~~~~----G~------d~gel~g-~-~~gv~v~~dl~~ll~~   73 (272)
T 4f3y_A            7 SMKIAIAGASGRMGRMLIEAVLAA-PDATLVGALDRTGSPQL----GQ------DAGAFLG-K-QTGVALTDDIERVCAE   73 (272)
T ss_dssp             CEEEEESSTTSHHHHHHHHHHHHC-TTEEEEEEBCCTTCTTT----TS------BTTTTTT-C-CCSCBCBCCHHHHHHH
T ss_pred             ccEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEEecCcccc----cc------cHHHHhC-C-CCCceecCCHHHHhcC
Confidence            57999999 899999999998875 5888776 688643210    11      0001100 0 1145667899998889


Q ss_pred             CcEEEEecc
Q 011654           79 ADIVFVSVN   87 (480)
Q Consensus        79 aDvVii~Vp   87 (480)
                      +|+||.+++
T Consensus        74 ~DVVIDfT~   82 (272)
T 4f3y_A           74 ADYLIDFTL   82 (272)
T ss_dssp             CSEEEECSC
T ss_pred             CCEEEEcCC
Confidence            999999853

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=97.71  E-value=6.7e-05  Score=75.43  Aligned_cols=68  Identities=16%  Similarity=0.196  Sum_probs=49.9

Q ss_pred             cEEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc-
Q 011654            2 VKICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE-   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~-   78 (480)
                      +||+|||+|.||.. .+..|.+. ++++|+ ++|++++++   .+.                 -+.....+|+++.+++ 
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~-~~~~l~av~d~~~~~~---~~~-----------------~~~~~~~~~~~~ll~~~   64 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTN-PHFELYKIVERSKELS---KER-----------------YPQASIVRSFKELTEDP   64 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHC-TTEEEEEEECSSCCGG---GTT-----------------CTTSEEESCSHHHHTCT
T ss_pred             eEEEEECCCHHHHHHHHHHHhhC-CCeEEEEEEcCCHHHH---HHh-----------------CCCCceECCHHHHhcCC
Confidence            58999999999997 66667664 578876 679987652   211                 1235677889988765 


Q ss_pred             -CcEEEEeccCCC
Q 011654           79 -ADIVFVSVNTPT   90 (480)
Q Consensus        79 -aDvVii~Vptp~   90 (480)
                       .|+|+||+|+..
T Consensus        65 ~vD~V~i~tp~~~   77 (362)
T 3fhl_A           65 EIDLIVVNTPDNT   77 (362)
T ss_dssp             TCCEEEECSCGGG
T ss_pred             CCCEEEEeCChHH
Confidence             899999988643

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=97.70  E-value=5.9e-05  Score=76.38  Aligned_cols=97  Identities=21%  Similarity=0.296  Sum_probs=66.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC-CCCCCCCCChHHHHHhhcCCCEEE--ecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG-DQLPIYEPGLEDVVTQCRGRNLFF--STDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~l~~~~~~~~l~~--t~d~~~a~~~   78 (480)
                      ++|+|||+|.+|..+|..+...  |.+|+++|+++++.+.+.+ ....+               ....  ..++.+.+..
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~--Ga~V~~~d~~~~~l~~~~~~~g~~~---------------~~~~~~~~~l~~~l~~  231 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGM--GATVTVLDINIDKLRQLDAEFCGRI---------------HTRYSSAYELEGAVKR  231 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTTSS---------------EEEECCHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhcCCee---------------EeccCCHHHHHHHHcC
Confidence            4799999999999999999887  8999999999998877654 11110               0000  1234566789


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +|+||.|++.|...       .+.+     +.+...+.++++.+|++.+
T Consensus       232 aDvVi~~~~~p~~~-------t~~l-----i~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          232 ADLVIGAVLVPGAK-------APKL-----VSNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             CSEEEECCCCTTSC-------CCCC-----BCHHHHTTSCTTCEEEEGG
T ss_pred             CCEEEECCCcCCCC-------Ccce-----ecHHHHhcCCCCcEEEEEe
Confidence            99999999766421       1111     1233456678889888765

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=97.69  E-value=6.8e-05  Score=73.36  Aligned_cols=112  Identities=17%  Similarity=0.098  Sum_probs=79.9

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      +||+++||..          ....+++.|.++|++|.+||......+   .+                   ...+...++
T Consensus         6 ~kIgfIGLG~----------MG~~mA~~L~~~G~~V~v~dr~~~~~~---~l-------------------~~~G~~~~~   53 (297)
T 4gbj_A            6 EKIAFLGLGN----------LGTPIAEILLEAGYELVVWNRTASKAE---PL-------------------TKLGATVVE   53 (297)
T ss_dssp             CEEEEECCST----------THHHHHHHHHHTTCEEEEC-------C---TT-------------------TTTTCEECS
T ss_pred             CcEEEEecHH----------HHHHHHHHHHHCCCeEEEEeCCHHHHH---HH-------------------HHcCCeEeC
Confidence            4899999976          999999999999999999997543321   11                   123567789


Q ss_pred             CHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecCC
Q 011654          405 DAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIGKP  468 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~~  468 (480)
                      |+.++++++|+|+++..-+. .++.-...+...+++..+|||+..+.+..      .+++.|+.|..-+..
T Consensus        54 s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVs  124 (297)
T 4gbj_A           54 NAIDAITPGGIVFSVLADDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIF  124 (297)
T ss_dssp             SGGGGCCTTCEEEECCSSHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEE
T ss_pred             CHHHHHhcCCceeeeccchhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcC
Confidence            99999999999999987754 33333345667777777999999887542      344679999766543

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=97.68  E-value=0.00016  Score=74.24  Aligned_cols=87  Identities=15%  Similarity=0.164  Sum_probs=58.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHC---CC-CCCC-CCChHHHHHhhcCCCEEEecCHHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNG---DQ-LPIY-EPGLEDVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~---~~-~~~~-e~~l~~l~~~~~~~~l~~t~d~~~a   75 (480)
                      +||||||+|.||..++..+.+. ++.+|. ++|+++++.+...+   |. ..+. .....++-.....+...+++|+++.
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~-~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeL  102 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARM-QGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLI  102 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTS-SSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhC-CCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHH
Confidence            5899999999999999888764 577754 68999998877643   20 1110 0111222111223457789999998


Q ss_pred             hc--cCcEEEEeccCC
Q 011654           76 VA--EADIVFVSVNTP   89 (480)
Q Consensus        76 ~~--~aDvVii~Vptp   89 (480)
                      ++  +.|+|++|+|+|
T Consensus       103 L~d~dIDaVviaTp~p  118 (446)
T 3upl_A          103 LSNPLIDVIIDATGIP  118 (446)
T ss_dssp             HTCTTCCEEEECSCCH
T ss_pred             hcCCCCCEEEEcCCCh
Confidence            76  589999998754

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=97.66  E-value=0.00012  Score=74.78  Aligned_cols=72  Identities=14%  Similarity=0.147  Sum_probs=53.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcC-------CCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKC-------PKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIE   73 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~-------~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~   73 (480)
                      +||||||+|.||...+..|.+..       .+.+|+ ++|+++++.+++.+..                 +..++.+|++
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~-----------------~~~~~y~d~~   89 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKL-----------------GAEKAYGDWR   89 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHH-----------------TCSEEESSHH
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHc-----------------CCCeEECCHH
Confidence            48999999999999888887530       134555 6899999988876520                 2235678899


Q ss_pred             HHhc--cCcEEEEeccCCC
Q 011654           74 KHVA--EADIVFVSVNTPT   90 (480)
Q Consensus        74 ~a~~--~aDvVii~Vptp~   90 (480)
                      +.++  +.|+|+||+|+..
T Consensus        90 ~ll~~~~vD~V~I~tp~~~  108 (412)
T 4gqa_A           90 ELVNDPQVDVVDITSPNHL  108 (412)
T ss_dssp             HHHHCTTCCEEEECSCGGG
T ss_pred             HHhcCCCCCEEEECCCcHH
Confidence            8775  6799999988654

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=97.66  E-value=3.7e-05  Score=74.37  Aligned_cols=98  Identities=22%  Similarity=0.233  Sum_probs=66.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +++.|||+|.+|.+++..|++.  |. +|++++|++++.+.+.+..                  .....+++.+++.++|
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~--G~~~v~v~~R~~~~a~~la~~~------------------~~~~~~~~~~~~~~aD  177 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKI--VRPTLTVANRTMSRFNNWSLNI------------------NKINLSHAESHLDEFD  177 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTT--CCSCCEEECSCGGGGTTCCSCC------------------EEECHHHHHHTGGGCS
T ss_pred             CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHhc------------------ccccHhhHHHHhcCCC
Confidence            4799999999999999999988  87 8999999998776655320                  1111234555678999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      +||-|+|.....+       .+     ..+  -...++++.+|++.++.|..|
T Consensus       178 iVInaTp~Gm~~~-------~~-----~~l--~~~~l~~~~~V~D~vY~P~~T  216 (277)
T 3don_A          178 IIINTTPAGMNGN-------TD-----SVI--SLNRLASHTLVSDIVYNPYKT  216 (277)
T ss_dssp             EEEECCC--------------C-----CSS--CCTTCCSSCEEEESCCSSSSC
T ss_pred             EEEECccCCCCCC-------Cc-----CCC--CHHHcCCCCEEEEecCCCCCC
Confidence            9999987542210       00     000  024467889999998886665

>4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major}

Probab=97.63  E-value=0.00025  Score=70.66  Aligned_cols=115  Identities=21%  Similarity=0.288  Sum_probs=73.7

Q ss_pred             EEEEEcC-ChhHHHHHHHHHHcC-CC----CeEEEEeCCHH--HHH----HHHCCCCCCCCCChHHHHHhhcCCCEEEec
Q 011654            3 KICCIGA-GYVGGPTMAVIALKC-PK----IEVAVVDISVS--RIA----AWNGDQLPIYEPGLEDVVTQCRGRNLFFST   70 (480)
Q Consensus         3 kI~VIGl-G~~G~~lA~~La~~~-~G----~~V~~~D~~~~--~v~----~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~   70 (480)
                      ||+|+|+ |.+|.+++..|+... -|    .++.++|+++.  .++    .|...-.+.             ......++
T Consensus        26 KVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~~~~Gva~DL~~~~~~~-------------~~~~~~~~   92 (345)
T 4h7p_A           26 KVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALKALAGVEAELEDCAFPL-------------LDKVVVTA   92 (345)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTTCTT-------------EEEEEEES
T ss_pred             EEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccccchhhhhhhhhcCccC-------------CCcEEEcC
Confidence            8999996 999999999998751 01    27999999763  222    122211111             12356778


Q ss_pred             CHHHHhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           71 DIEKHVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      +..+++++||+||++-.-|..+.   .++    ..+.+.+++..+.|.++..++.+|++ -|.|..+.
T Consensus        93 ~~~~a~~~advVvi~aG~prkpG---mtR~DLl~~Na~I~~~~~~~i~~~a~~~~~vlv-vsNPvd~~  156 (345)
T 4h7p_A           93 DPRVAFDGVAIAIMCGAFPRKAG---MERKDLLEMNARIFKEQGEAIAAVAASDCRVVV-VGNPANTN  156 (345)
T ss_dssp             CHHHHTTTCSEEEECCCCCCCTT---CCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEE-CSSSHHHH
T ss_pred             ChHHHhCCCCEEEECCCCCCCCC---CCHHHHHHHhHHHHHHHHHHHHhhccCceEEEE-eCCCcchH
Confidence            88888999999999987665431   110    11234456666777787777776544 34566553

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=97.62  E-value=0.00013  Score=71.74  Aligned_cols=70  Identities=16%  Similarity=0.090  Sum_probs=51.1

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh--
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIEV-AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV--   76 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~--   76 (480)
                      |+||+|||+ |++|...+..+...  +.++ .++|+++++. .+.+.                 .+...+.+|+++.+  
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~--~~~lvav~d~~~~~~-~~~~~-----------------~~~~~~~~~~~~ll~~   62 (312)
T 3o9z_A            3 MTRFALTGLAGYIAPRHLKAIKEV--GGVLVASLDPATNVG-LVDSF-----------------FPEAEFFTEPEAFEAY   62 (312)
T ss_dssp             CCEEEEECTTSSSHHHHHHHHHHT--TCEEEEEECSSCCCG-GGGGT-----------------CTTCEEESCHHHHHHH
T ss_pred             ceEEEEECCChHHHHHHHHHHHhC--CCEEEEEEcCCHHHH-HHHhh-----------------CCCCceeCCHHHHHHH
Confidence            689999999 79999999999886  6664 5689987752 12211                 12356677887765  


Q ss_pred             --------ccCcEEEEeccCCC
Q 011654           77 --------AEADIVFVSVNTPT   90 (480)
Q Consensus        77 --------~~aDvVii~Vptp~   90 (480)
                              .+.|+|+||+|+..
T Consensus        63 ~~~l~~~~~~vD~V~I~tP~~~   84 (312)
T 3o9z_A           63 LEDLRDRGEGVDYLSIASPNHL   84 (312)
T ss_dssp             HHHHHHTTCCCSEEEECSCGGG
T ss_pred             hhhhcccCCCCcEEEECCCchh
Confidence                    57899999988654

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=97.62  E-value=0.0011  Score=64.52  Aligned_cols=122  Identities=12%  Similarity=0.101  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCC
Q 011654          308 NRFVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPI  387 (480)
Q Consensus       308 ~~~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~  387 (480)
                      ++.+..++..++..+.+++|+|+|+.-          -+..+++.|...|++|.+|||.....+...+++          
T Consensus       139 e~a~~~~l~~~~~~l~g~~v~IiG~G~----------iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g----------  198 (293)
T 3d4o_A          139 EGTIMMAIQHTDFTIHGANVAVLGLGR----------VGMSVARKFAALGAKVKVGARESDLLARIAEMG----------  198 (293)
T ss_dssp             HHHHHHHHHHCSSCSTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT----------
T ss_pred             HHHHHHHHHhcCCCCCCCEEEEEeeCH----------HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCC----------
Confidence            444444444455578999999999743          789999999999999999999765432222221          


Q ss_pred             CCCCCCCCCCCceee--ecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC---CCChHHHhhcCcEE
Q 011654          388 HLQPMSPPASKQVNV--VWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN---ILDVEKLREIGFIV  462 (480)
Q Consensus       388 ~~~~~~~~~~~~~~~--~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~---~~~~~~~~~~g~~y  462 (480)
                                  ...  .+++++.++++|+|+++++...+   +. ...+.|++.+++||.-+   -.+.+..+..|..+
T Consensus       199 ------------~~~~~~~~l~~~l~~aDvVi~~~p~~~i---~~-~~l~~mk~~~~lin~ar~~~~~~~~~a~~~Gv~~  262 (293)
T 3d4o_A          199 ------------MEPFHISKAAQELRDVDVCINTIPALVV---TA-NVLAEMPSHTFVIDLASKPGGTDFRYAEKRGIKA  262 (293)
T ss_dssp             ------------SEEEEGGGHHHHTTTCSEEEECCSSCCB---CH-HHHHHSCTTCEEEECSSTTCSBCHHHHHHHTCEE
T ss_pred             ------------CeecChhhHHHHhcCCCEEEECCChHHh---CH-HHHHhcCCCCEEEEecCCCCCCCHHHHHHCCCEE
Confidence                        122  24678889999999999987543   33 34567888889999874   23445556678887


Q ss_pred             EEe
Q 011654          463 YSI  465 (480)
Q Consensus       463 ~~i  465 (480)
                      +.+
T Consensus       263 ~~~  265 (293)
T 3d4o_A          263 LLV  265 (293)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=97.62  E-value=0.00026  Score=72.07  Aligned_cols=89  Identities=17%  Similarity=0.134  Sum_probs=64.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|+|+|.+|..+|..+...  |.+|+++|+++.+.......                   ++. ..+++++++.+|+
T Consensus       221 ktV~ViG~G~IGk~vA~~Lra~--Ga~Viv~D~dp~ra~~A~~~-------------------G~~-v~~Leeal~~ADI  278 (435)
T 3gvp_A          221 KQVVVCGYGEVGKGCCAALKAM--GSIVYVTEIDPICALQACMD-------------------GFR-LVKLNEVIRQVDI  278 (435)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCE-ECCHHHHTTTCSE
T ss_pred             CEEEEEeeCHHHHHHHHHHHHC--CCEEEEEeCChhhhHHHHHc-------------------CCE-eccHHHHHhcCCE
Confidence            4799999999999999999887  89999999998754432221                   122 2467888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv  129 (480)
                      |++|..++.         ..+        .+....++++.+|++.+-.
T Consensus       279 Vi~atgt~~---------lI~--------~e~l~~MK~gailINvgrg  309 (435)
T 3gvp_A          279 VITCTGNKN---------VVT--------REHLDRMKNSCIVCNMGHS  309 (435)
T ss_dssp             EEECSSCSC---------SBC--------HHHHHHSCTTEEEEECSST
T ss_pred             EEECCCCcc---------cCC--------HHHHHhcCCCcEEEEecCC
Confidence            999844321         112        1233557889999886643

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=97.61  E-value=7.8e-05  Score=71.19  Aligned_cols=67  Identities=16%  Similarity=0.279  Sum_probs=54.1

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +|.|||+|.||.+++..|++.  |. +|++++|++++.+.+.+..                  +....+++.++++++|+
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~--G~~~I~v~nR~~~ka~~la~~~------------------~~~~~~~~~~~~~~aDi  169 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQM--GVKDIWVVNRTIERAKALDFPV------------------KIFSLDQLDEVVKKAKS  169 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT--TCCCEEEEESCHHHHHTCCSSC------------------EEEEGGGHHHHHHTCSE
T ss_pred             eEEEECcHHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHc------------------ccCCHHHHHhhhcCCCE
Confidence            689999999999999999998  87 8999999999988776521                  11233556677889999


Q ss_pred             EEEeccCC
Q 011654           82 VFVSVNTP   89 (480)
Q Consensus        82 Vii~Vptp   89 (480)
                      ||.|+|..
T Consensus       170 VInatp~g  177 (253)
T 3u62_A          170 LFNTTSVG  177 (253)
T ss_dssp             EEECSSTT
T ss_pred             EEECCCCC
Confidence            99998754

>5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A*

Probab=97.60  E-value=0.00033  Score=69.58  Aligned_cols=114  Identities=14%  Similarity=0.270  Sum_probs=73.7

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCC--e-----EEEEeCCH--HHHH----HHHCCCCCCCCCChHHHHHhhcCCCEE
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKI--E-----VAVVDISV--SRIA----AWNGDQLPIYEPGLEDVVTQCRGRNLF   67 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~--~-----V~~~D~~~--~~v~----~l~~~~~~~~e~~l~~l~~~~~~~~l~   67 (480)
                      |||+|+| +|.+|.++|..|+.+  |.  +     +.++|+++  ++.+    .|.....++             ...+.
T Consensus         4 ~kV~V~GaaG~VG~~la~~L~~~--~~~~e~~~~~l~L~Di~~~~~~~~g~a~DL~~~~~~~-------------~~~~~   68 (333)
T 5mdh_A            4 IRVLVTGAAGQIAYSLLYSIGNG--SVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPL-------------LKDVI   68 (333)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTT--TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTT-------------EEEEE
T ss_pred             eEEEEECCCCHHHHHHHHHHHhC--CCccccCCCEEEEEeCCCccccchhhHhhhHhhhhcc-------------cCCEE
Confidence            7999999 799999999999876  44  5     99999974  2332    233221111             02356


Q ss_pred             EecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           68 FSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        68 ~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      .+++..+++++||+||++-..|...   |.+ +.|     ...+++..+.+.++.+++..+++ -|.|..+.-
T Consensus        69 ~~~~~~~~~~daDvVvitAg~prkp---G~t-R~dll~~N~~i~~~i~~~i~~~~~~~~~viv-vsNPvd~~t  136 (333)
T 5mdh_A           69 ATDKEEIAFKDLDVAILVGSMPRRD---GME-RKDLLKANVKIFKCQGAALDKYAKKSVKVIV-VGNPANTNC  136 (333)
T ss_dssp             EESCHHHHTTTCSEEEECCSCCCCT---TCC-TTTTHHHHHHHHHHHHHHHHHHSCTTCEEEE-CSSSHHHHH
T ss_pred             EcCCcHHHhCCCCEEEEeCCCCCCC---CCC-HHHHHHHHHHHHHHHHHHHHHhCCCCeEEEE-cCCchHHHH
Confidence            6777777799999999997665432   111 223     45566677777777766643433 356766543

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=97.60  E-value=0.00015  Score=71.69  Aligned_cols=70  Identities=24%  Similarity=0.184  Sum_probs=50.8

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCe-EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh--
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIE-VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV--   76 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~--   76 (480)
                      |+||+|||+ |++|...+..|...  +.+ |.++|+++++. .+.+.                 .+...+.+|+++.+  
T Consensus         3 mirvgiIG~gG~i~~~h~~~l~~~--~~~lvav~d~~~~~~-~~~~~-----------------~~~~~~~~~~~~ll~~   62 (318)
T 3oa2_A            3 MKNFALIGAAGYIAPRHMRAIKDT--GNCLVSAYDINDSVG-IIDSI-----------------SPQSEFFTEFEFFLDH   62 (318)
T ss_dssp             CCEEEEETTTSSSHHHHHHHHHHT--TCEEEEEECSSCCCG-GGGGT-----------------CTTCEEESSHHHHHHH
T ss_pred             ceEEEEECCCcHHHHHHHHHHHhC--CCEEEEEEcCCHHHH-HHHhh-----------------CCCCcEECCHHHHHHh
Confidence            689999999 79999999999886  666 45689887642 22211                 12356677887755  


Q ss_pred             ---------ccCcEEEEeccCCC
Q 011654           77 ---------AEADIVFVSVNTPT   90 (480)
Q Consensus        77 ---------~~aDvVii~Vptp~   90 (480)
                               .+.|+|+||+|+..
T Consensus        63 ~~~l~~~~~~~vD~V~I~tP~~~   85 (318)
T 3oa2_A           63 ASNLKRDSATALDYVSICSPNYL   85 (318)
T ss_dssp             HHHHTTSTTTSCCEEEECSCGGG
T ss_pred             hhhhhhccCCCCcEEEECCCcHH
Confidence                     47899999988654

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=97.59  E-value=0.00017  Score=72.23  Aligned_cols=101  Identities=9%  Similarity=0.126  Sum_probs=76.0

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          -...+++.|...|.+|.+|||....+. ...                      .+
T Consensus       156 ~~l~g~tvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~----------------------~g  202 (352)
T 3gg9_A          156 RVLKGQTLGIFGYGK----------IGQLVAGYGRAFGMNVLVWGRENSKER-ARA----------------------DG  202 (352)
T ss_dssp             CCCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSHHHHHH-HHH----------------------TT
T ss_pred             ccCCCCEEEEEeECH----------HHHHHHHHHHhCCCEEEEECCCCCHHH-HHh----------------------cC
Confidence            357899999999854          789999999999999999999753322 111                      23


Q ss_pred             eeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCC--CCChH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRN--ILDVE  453 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~  453 (480)
                      +++.++++++++++|+|+++++-. +-+.+--....+.|++.+++||+.+  +.+.+
T Consensus       203 ~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~  259 (352)
T 3gg9_A          203 FAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEEN  259 (352)
T ss_dssp             CEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTT
T ss_pred             ceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHH
Confidence            456678999999999999998763 4444333566788998889999975  45543

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=97.58  E-value=0.00029  Score=70.39  Aligned_cols=71  Identities=15%  Similarity=0.345  Sum_probs=47.8

Q ss_pred             cEEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc-
Q 011654            2 VKICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE-   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~-   78 (480)
                      +||+|||+|.||.. .+..+.+. ++++|+ ++|++  +.+.+.+               +....+....+|+++.+++ 
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l~~~-~~~~l~av~d~~--~~~~~a~---------------~~~~~~~~~~~~~~~ll~~~   64 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYVMIR-ETLEVKTIFDLH--VNEKAAA---------------PFKEKGVNFTADLNELLTDP   64 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHHTTC-TTEEEEEEECTT--CCHHHHH---------------HHHTTTCEEESCTHHHHSCT
T ss_pred             eEEEEEccCHHHHHHHHHHHhhC-CCeEEEEEECCC--HHHHHHH---------------hhCCCCCeEECCHHHHhcCC
Confidence            59999999999984 55556553 578876 67887  2222221               0001235677899988764 


Q ss_pred             -CcEEEEeccCCC
Q 011654           79 -ADIVFVSVNTPT   90 (480)
Q Consensus        79 -aDvVii~Vptp~   90 (480)
                       .|+|++|+|+..
T Consensus        65 ~~D~V~i~tp~~~   77 (349)
T 3i23_A           65 EIELITICTPAHT   77 (349)
T ss_dssp             TCCEEEECSCGGG
T ss_pred             CCCEEEEeCCcHH
Confidence             899999988643

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=97.58  E-value=8.4e-05  Score=73.49  Aligned_cols=65  Identities=18%  Similarity=0.486  Sum_probs=48.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEV-AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +||+|||+|.||..++..+.+. ++.++ .++|+++++  .+.                    -++..++|+++.+.++|
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~-~~~elvav~d~~~~~--~~~--------------------~gv~~~~d~~~ll~~~D   60 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQ-PDMDLVGIFSRRATL--DTK--------------------TPVFDVADVDKHADDVD   60 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTC-SSEEEEEEEESSSCC--SSS--------------------SCEEEGGGGGGTTTTCS
T ss_pred             CEEEEEeecHHHHHHHHHHhcC-CCCEEEEEEcCCHHH--hhc--------------------CCCceeCCHHHHhcCCC
Confidence            6899999999999999988865 46675 578987543  111                    02556677777667899


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +|++|+|+.
T Consensus        61 vViiatp~~   69 (320)
T 1f06_A           61 VLFLCMGSA   69 (320)
T ss_dssp             EEEECSCTT
T ss_pred             EEEEcCCcH
Confidence            999998753

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=97.57  E-value=0.00033  Score=70.06  Aligned_cols=104  Identities=13%  Similarity=0.155  Sum_probs=78.8

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          -...+++.|...|.+|.+||+.....+...++                      +
T Consensus       160 ~~l~gktvGIIG~G~----------IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~----------------------g  207 (351)
T 3jtm_A          160 YDLEGKTIGTVGAGR----------IGKLLLQRLKPFGCNLLYHDRLQMAPELEKET----------------------G  207 (351)
T ss_dssp             CCSTTCEEEEECCSH----------HHHHHHHHHGGGCCEEEEECSSCCCHHHHHHH----------------------C
T ss_pred             ccccCCEEeEEEeCH----------HHHHHHHHHHHCCCEEEEeCCCccCHHHHHhC----------------------C
Confidence            357899999999854          78999999999999999999976443333322                      2


Q ss_pred             eeeecCHHHhcccccEEEEEecc-cccccccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEW-DEFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      +.+.+++++.++.+|+|+++++. ++-+++=-.+..+.|++.++|||+.+  +.|.+.+
T Consensus       208 ~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL  266 (351)
T 3jtm_A          208 AKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQAV  266 (351)
T ss_dssp             CEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHH
T ss_pred             CeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECcCchhhCHHHH
Confidence            34567899999999999999986 45555433566688998889999875  5565443

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=97.57  E-value=0.00021  Score=74.64  Aligned_cols=73  Identities=12%  Similarity=0.213  Sum_probs=55.1

Q ss_pred             cEEEEEcC----ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            2 VKICCIGA----GYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      +||+|||+    |.||..++..|.+..++++|+ ++|+++++.+.+.+..      +         ....++.+|+++.+
T Consensus        40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~------g---------~~~~~~~~d~~ell  104 (479)
T 2nvw_A           40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQL------Q---------LKHATGFDSLESFA  104 (479)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHT------T---------CTTCEEESCHHHHH
T ss_pred             CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHc------C---------CCcceeeCCHHHHh
Confidence            58999999    999999999998742477765 7899999888766421      0         01234678898877


Q ss_pred             c--cCcEEEEeccCC
Q 011654           77 A--EADIVFVSVNTP   89 (480)
Q Consensus        77 ~--~aDvVii~Vptp   89 (480)
                      +  +.|+|+||+|+.
T Consensus       105 ~~~~vD~V~I~tp~~  119 (479)
T 2nvw_A          105 QYKDIDMIVVSVKVP  119 (479)
T ss_dssp             HCTTCSEEEECSCHH
T ss_pred             cCCCCCEEEEcCCcH
Confidence            5  689999998854

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=97.56  E-value=0.00017  Score=72.93  Aligned_cols=72  Identities=17%  Similarity=0.270  Sum_probs=52.1

Q ss_pred             cEEEEEc-CChhHHH-HH----HHHHHcCCCCeE----------EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCC
Q 011654            2 VKICCIG-AGYVGGP-TM----AVIALKCPKIEV----------AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRN   65 (480)
Q Consensus         2 mkI~VIG-lG~~G~~-lA----~~La~~~~G~~V----------~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~   65 (480)
                      +||+||| +|.||.. .+    ..+.+. ++..+          .++|+++++.+.+.+..                 +.
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~-~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~-----------------~~   68 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQ-GGVRLKNGDRIMPDPILVGRSAEKVEALAKRF-----------------NI   68 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHH-TSEECTTSCEEEEEEEEECSSSHHHHHHHHHT-----------------TC
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhc-CceeecCCcccceeeEEEcCCHHHHHHHHHHh-----------------CC
Confidence            5899999 9999998 66    666655 23333          38999999988776421                 11


Q ss_pred             EEEecCHHHHhcc--CcEEEEeccCCCC
Q 011654           66 LFFSTDIEKHVAE--ADIVFVSVNTPTK   91 (480)
Q Consensus        66 l~~t~d~~~a~~~--aDvVii~Vptp~~   91 (480)
                      -.+++|+++.+++  .|+|+||+|+..+
T Consensus        69 ~~~~~~~~~ll~~~~iD~V~i~tp~~~h   96 (383)
T 3oqb_A           69 ARWTTDLDAALADKNDTMFFDAATTQAR   96 (383)
T ss_dssp             CCEESCHHHHHHCSSCCEEEECSCSSSS
T ss_pred             CcccCCHHHHhcCCCCCEEEECCCchHH
Confidence            1356888887754  8999999887543

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=97.54  E-value=0.00036  Score=69.54  Aligned_cols=102  Identities=9%  Similarity=0.059  Sum_probs=77.7

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          -...+++.|...|.+|.+|||.....+...                        +
T Consensus       169 ~~l~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~------------------------g  214 (345)
T 4g2n_A          169 MGLTGRRLGIFGMGR----------IGRAIATRARGFGLAIHYHNRTRLSHALEE------------------------G  214 (345)
T ss_dssp             CCCTTCEEEEESCSH----------HHHHHHHHHHTTTCEEEEECSSCCCHHHHT------------------------T
T ss_pred             cccCCCEEEEEEeCh----------hHHHHHHHHHHCCCEEEEECCCCcchhhhc------------------------C
Confidence            467899999999854          789999999999999999999864432211                        2


Q ss_pred             eeeecCHHHhcccccEEEEEecc-cccccccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEW-DEFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      ..+.+++++.++++|+|+++++. ++-+.+=-.+....|++.+++||+.+  ++|.+.+
T Consensus       215 ~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL  273 (345)
T 4g2n_A          215 AIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGDLINDDAL  273 (345)
T ss_dssp             CEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHH
T ss_pred             CeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHH
Confidence            45567899999999999999986 34444323566688998889999865  6665543

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.53  E-value=7.6e-05  Score=75.32  Aligned_cols=101  Identities=17%  Similarity=0.240  Sum_probs=64.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC-CCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG-DQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~-~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|+|+|+|.+|..+|..+...  |++|+++|+++++.+.+.+ ....+.             ....-..++++.+.++|
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~--Ga~V~~~d~~~~~~~~~~~~~g~~~~-------------~~~~~~~~l~~~~~~~D  231 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGM--GAQVTILDVNHKRLQYLDDVFGGRVI-------------TLTATEANIKKSVQHAD  231 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTTSEE-------------EEECCHHHHHHHHHHCS
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEEECCHHHHHHHHHhcCceEE-------------EecCCHHHHHHHHhCCC
Confidence            5899999999999999999987  8999999999998877653 111000             00000123456678999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv  129 (480)
                      +||.|++.+...       .+.     -..+...+.++++.+||+.|..
T Consensus       232 vVi~~~g~~~~~-------~~~-----li~~~~l~~mk~gg~iV~v~~~  268 (369)
T 2eez_A          232 LLIGAVLVPGAK-------APK-----LVTRDMLSLMKEGAVIVDVAVD  268 (369)
T ss_dssp             EEEECCC--------------C-----CSCHHHHTTSCTTCEEEECC--
T ss_pred             EEEECCCCCccc-------cch-----hHHHHHHHhhcCCCEEEEEecC
Confidence            999999864210       000     0123445667788888876643

>1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A*

Probab=97.52  E-value=0.0007  Score=66.60  Aligned_cols=121  Identities=21%  Similarity=0.368  Sum_probs=70.6

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecC-HHHHh
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDI--SVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTD-IEKHV   76 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~--~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d-~~~a~   76 (480)
                      |||+|+|+ |.+|.+++..|+.+....++.++|+  ++++.+.....        +....... ....++.++| +.+++
T Consensus         1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~d--------l~~~~~~~~~~~~i~~~~d~l~~al   72 (313)
T 1hye_A            1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLRED--------IYDALAGTRSDANIYVESDENLRII   72 (313)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHH--------HHHHHTTSCCCCEEEEEETTCGGGG
T ss_pred             CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHHHHHH--------HHHhHHhcCCCeEEEeCCcchHHHh
Confidence            79999999 9999999999987621247999999  87655431110        00000000 0113444343 56679


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      +++|+||++...|... +  ..+    ..+...+++.++.+.++.  +.+|++ +|.|..+.-.
T Consensus        73 ~gaD~Vi~~Ag~~~~~-g--~~r~dl~~~N~~i~~~i~~~i~~~~--~~~vlv-~SNPv~~~t~  130 (313)
T 1hye_A           73 DESDVVIITSGVPRKE-G--MSRMDLAKTNAKIVGKYAKKIAEIC--DTKIFV-ITNPVDVMTY  130 (313)
T ss_dssp             TTCSEEEECCSCCCCT-T--CCHHHHHHHHHHHHHHHHHHHHHHC--CCEEEE-CSSSHHHHHH
T ss_pred             CCCCEEEECCCCCCCC-C--CcHHHHHHHHHHHHHHHHHHHHHhC--CeEEEE-ecCcHHHHHH
Confidence            9999999998765432 1  000    112233455556666665  444444 5678776533

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=97.51  E-value=7.7e-05  Score=76.40  Aligned_cols=71  Identities=15%  Similarity=0.309  Sum_probs=53.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCC--CCChHHHHHhhcCCCEEEecCHHHH-hcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIY--EPGLEDVVTQCRGRNLFFSTDIEKH-VAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~l~~~~~~~~l~~t~d~~~a-~~~   78 (480)
                      |+|.|+|+|.+|..+|..|.+.  |++|+++|.|+++++.+++...++.  +..-.+.              +.++ +.+
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~--g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~--------------L~~agi~~   68 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSS--GVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDL--------------LESAGAAK   68 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT--TCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHH--------------HHHTTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHH--------------HHhcCCCc
Confidence            6799999999999999999998  9999999999999999886433221  1111111              1222 578


Q ss_pred             CcEEEEeccC
Q 011654           79 ADIVFVSVNT   88 (480)
Q Consensus        79 aDvVii~Vpt   88 (480)
                      +|+||+|++.
T Consensus        69 A~~viv~~~~   78 (413)
T 3l9w_A           69 AEVLINAIDD   78 (413)
T ss_dssp             CSEEEECCSS
T ss_pred             cCEEEECCCC
Confidence            9999999864

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.49  E-value=0.00023  Score=62.06  Aligned_cols=40  Identities=13%  Similarity=0.091  Sum_probs=34.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC-HHHHHHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS-VSRIAAWN   43 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~-~~~v~~l~   43 (480)
                      ++|.|+|+|.+|..++..|.+.  |++|+++|++ +++.+.+.
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~~--g~~V~vid~~~~~~~~~~~   44 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQR--GQNVTVISNLPEDDIKQLE   44 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCHHHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHHC--CCCEEEEECCChHHHHHHH
Confidence            4799999999999999999998  9999999998 56555554

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=97.49  E-value=0.00051  Score=68.93  Aligned_cols=101  Identities=18%  Similarity=0.270  Sum_probs=74.9

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          -...+++.|...|.+|.+|||....+.. ...                      +
T Consensus       172 ~~l~gktvGIIGlG~----------IG~~vA~~l~~fG~~V~~~d~~~~~~~~-~~~----------------------g  218 (365)
T 4hy3_A          172 RLIAGSEIGIVGFGD----------LGKALRRVLSGFRARIRVFDPWLPRSML-EEN----------------------G  218 (365)
T ss_dssp             CCSSSSEEEEECCSH----------HHHHHHHHHTTSCCEEEEECSSSCHHHH-HHT----------------------T
T ss_pred             cccCCCEEEEecCCc----------ccHHHHHhhhhCCCEEEEECCCCCHHHH-hhc----------------------C
Confidence            457899999999854          7899999999999999999999654432 221                      2


Q ss_pred             eeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCC--CCChHH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEK  454 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~  454 (480)
                      +.+ .++++.++.+|+|++++.-. +-+.+--....+.|++.+++||+.+  ++|.+.
T Consensus       219 ~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~a  275 (365)
T 4hy3_A          219 VEP-ASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDA  275 (365)
T ss_dssp             CEE-CCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHH
T ss_pred             eee-CCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHH
Confidence            233 58999999999999988764 4444333566788998889999974  666543

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=97.49  E-value=0.00025  Score=72.28  Aligned_cols=41  Identities=20%  Similarity=0.164  Sum_probs=36.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      .+|+|||+|.+|..++..+...  |.+|+++|+++++.+.+.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~--Ga~V~v~D~~~~~~~~~~~  213 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSL--GAIVRAFDTRPEVKEQVQS  213 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCGGGHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHH
Confidence            4799999999999999988877  8899999999988776653

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=97.48  E-value=0.00022  Score=73.67  Aligned_cols=73  Identities=11%  Similarity=0.169  Sum_probs=54.8

Q ss_pred             cEEEEEcC----ChhHHHHHHHHHHcCCCCeE-EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            2 VKICCIGA----GYVGGPTMAVIALKCPKIEV-AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      +||+|||+    |.||..++..|.+..++++| .++|+++++.+.+.+..      +         ....+..+|+++.+
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~------g---------~~~~~~~~~~~~ll   85 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRL------K---------LSNATAFPTLESFA   85 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHT------T---------CTTCEEESSHHHHH
T ss_pred             CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHc------C---------CCcceeeCCHHHHh
Confidence            58999999    99999999999864247776 57899999887766420      0         01234678898877


Q ss_pred             c--cCcEEEEeccCC
Q 011654           77 A--EADIVFVSVNTP   89 (480)
Q Consensus        77 ~--~aDvVii~Vptp   89 (480)
                      +  +.|+|+||+|+.
T Consensus        86 ~~~~vD~V~i~tp~~  100 (438)
T 3btv_A           86 SSSTIDMIVIAIQVA  100 (438)
T ss_dssp             HCSSCSEEEECSCHH
T ss_pred             cCCCCCEEEEeCCcH
Confidence            5  689999998754

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=97.45  E-value=0.00018  Score=72.40  Aligned_cols=71  Identities=15%  Similarity=0.159  Sum_probs=52.0

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCC-------Ce-EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPK-------IE-VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK   74 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G-------~~-V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~   74 (480)
                      ||||||+|.||...+..+... |+       .+ |.++|+++++.+.+.+..                 +.-++.+|+++
T Consensus         8 rvgiIG~G~ig~~h~~~~~~~-~~~~~~~~~~~l~av~d~~~~~a~~~a~~~-----------------g~~~~~~d~~~   69 (390)
T 4h3v_A            8 GIGLIGYAFMGAAHSQAWRSA-PRFFDLPLHPDLNVLCGRDAEAVRAAAGKL-----------------GWSTTETDWRT   69 (390)
T ss_dssp             EEEEECHHHHHHHHHHHHHHH-HHHSCCSSEEEEEEEECSSHHHHHHHHHHH-----------------TCSEEESCHHH
T ss_pred             cEEEEcCCHHHHHHHHHHHhC-ccccccccCceEEEEEcCCHHHHHHHHHHc-----------------CCCcccCCHHH
Confidence            689999999999888877653 11       24 446899999988776420                 12256789998


Q ss_pred             Hhc--cCcEEEEeccCCCC
Q 011654           75 HVA--EADIVFVSVNTPTK   91 (480)
Q Consensus        75 a~~--~aDvVii~Vptp~~   91 (480)
                      .++  +.|+|+||+|+..+
T Consensus        70 ll~~~~iDaV~I~tP~~~H   88 (390)
T 4h3v_A           70 LLERDDVQLVDVCTPGDSH   88 (390)
T ss_dssp             HTTCTTCSEEEECSCGGGH
T ss_pred             HhcCCCCCEEEEeCChHHH
Confidence            775  57999999886543

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=97.44  E-value=0.00043  Score=69.48  Aligned_cols=112  Identities=14%  Similarity=0.192  Sum_probs=83.5

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      +..+|+|+|+..          ....++..|.+.|.+|.+||......+....                      .++..
T Consensus        21 ~~mkIgiIGlG~----------mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~----------------------~g~~~   68 (358)
T 4e21_A           21 QSMQIGMIGLGR----------MGADMVRRLRKGGHECVVYDLNVNAVQALER----------------------EGIAG   68 (358)
T ss_dssp             -CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHT----------------------TTCBC
T ss_pred             cCCEEEEECchH----------HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----------------------CCCEE
Confidence            457999999976          8899999999999999999986443222211                      23556


Q ss_pred             ecCHHHhcccc---cEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecC
Q 011654          403 VWDAYQAAKDA---HGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIGK  467 (480)
Q Consensus       403 ~~~~~~a~~~a---d~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~  467 (480)
                      .++++++++++   |+|++++..+..++ -.+.+...+++..+|||+.+.....      .+.+.|+.|...+.
T Consensus        69 ~~s~~e~~~~a~~~DvVi~~vp~~~v~~-vl~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapV  141 (358)
T 4e21_A           69 ARSIEEFCAKLVKPRVVWLMVPAAVVDS-MLQRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGT  141 (358)
T ss_dssp             CSSHHHHHHHSCSSCEEEECSCGGGHHH-HHHHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred             eCCHHHHHhcCCCCCEEEEeCCHHHHHH-HHHHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCC
Confidence            77899999999   99999998885443 2356777777777999999988532      34456888887654

>1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A

Probab=97.44  E-value=0.00061  Score=69.68  Aligned_cols=78  Identities=17%  Similarity=0.143  Sum_probs=51.8

Q ss_pred             CcEEEEEcCChhHHHH--HHHHHH--c-CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654            1 MVKICCIGAGYVGGPT--MAVIAL--K-CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         1 imkI~VIGlG~~G~~l--A~~La~--~-~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a   75 (480)
                      +|||+|||+|.+ .+.  +..|+.  . .++.+|+++|+++++++....         +...+... .-+++.++|+.++
T Consensus         2 ~~KI~IIGaG~v-~~~~l~~~l~~~~~~l~~~el~L~Di~~~~~~~~~~---------~~~~~~~~-~~~v~~t~d~~~a   70 (417)
T 1up7_A            2 HMRIAVIGGGSS-YTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD---------FVKRLVKD-RFKVLISDTFEGA   70 (417)
T ss_dssp             CCEEEEETTTCT-THHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH---------HHHHHHTT-SSEEEECSSHHHH
T ss_pred             CCEEEEECCCHH-HHHHHHHHHHhcccCCCcCEEEEEeCCHHHHHHHHH---------HHHHHhhC-CeEEEEeCCHHHH
Confidence            589999999996 332  223454  3 136789999999998775331         11111000 1356777898788


Q ss_pred             hccCcEEEEeccCC
Q 011654           76 VAEADIVFVSVNTP   89 (480)
Q Consensus        76 ~~~aDvVii~Vptp   89 (480)
                      +++||+||++...+
T Consensus        71 l~~AD~Viitagvg   84 (417)
T 1up7_A           71 VVDAKYVIFQFRPG   84 (417)
T ss_dssp             HTTCSEEEECCCTT
T ss_pred             hCCCCEEEEcCCCC
Confidence            99999999998654

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=97.42  E-value=9.1e-05  Score=71.54  Aligned_cols=73  Identities=10%  Similarity=0.136  Sum_probs=47.6

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|+|+ |.||..++..+... ++++++ ++|++++...    +..--...++       ...++..++|+++++.++
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~-~~~elva~~d~~~~~~~----g~d~~~~~g~-------~~~~v~~~~dl~~~l~~~   73 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALEREGSSLL----GSDAGELAGA-------GKTGVTVQSSLDAVKDDF   73 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECCTTCTTC----SCCTTCSSSS-------SCCSCCEESCSTTTTTSC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCchhhh----hhhHHHHcCC-------CcCCceecCCHHHHhcCC
Confidence            79999998 99999999988764 588877 6787654211    1000000000       012345677888777899


Q ss_pred             cEEEEec
Q 011654           80 DIVFVSV   86 (480)
Q Consensus        80 DvVii~V   86 (480)
                      |+||-+.
T Consensus        74 DvVIDft   80 (273)
T 1dih_A           74 DVFIDFT   80 (273)
T ss_dssp             SEEEECS
T ss_pred             CEEEEcC
Confidence            9999554

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=97.41  E-value=0.00068  Score=67.74  Aligned_cols=105  Identities=15%  Similarity=0.197  Sum_probs=78.2

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHH-hCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLL-GDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~-~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      +..+.+++|+|+|+..          ....+++.|. ..|.+|.+||+.....+...++                     
T Consensus       158 ~~~l~g~~vgIIG~G~----------IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~---------------------  206 (348)
T 2w2k_A          158 AHNPRGHVLGAVGLGA----------IQKEIARKAVHGLGMKLVYYDVAPADAETEKAL---------------------  206 (348)
T ss_dssp             CCCSTTCEEEEECCSH----------HHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHH---------------------
T ss_pred             CcCCCCCEEEEEEECH----------HHHHHHHHHHHhcCCEEEEECCCCcchhhHhhc---------------------
Confidence            3467899999999865          8899999999 9999999999986543322222                     


Q ss_pred             CceeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCC--CChHHH
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNI--LDVEKL  455 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~--~~~~~~  455 (480)
                       ++.+.+++++.++++|+|++++... +.+.+=-.++...|++.++|+|+.+.  .+.+.+
T Consensus       207 -g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL  266 (348)
T 2w2k_A          207 -GAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDAL  266 (348)
T ss_dssp             -TCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHH
T ss_pred             -CcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHH
Confidence             2344567889999999999999874 35554324566789888899998775  554433

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=97.41  E-value=0.0019  Score=59.40  Aligned_cols=71  Identities=21%  Similarity=0.196  Sum_probs=52.0

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||.|.|+ |.+|..++..|+++  |++|++++|++++.+.+......+..-++.              +...+++.++|
T Consensus         1 MkilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~--------------d~~~~~~~~~d   64 (224)
T 3h2s_A            1 MKIAVLGATGRAGSAIVAEARRR--GHEVLAVVRDPQKAADRLGATVATLVKEPL--------------VLTEADLDSVD   64 (224)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHTCTTSEEEECCGG--------------GCCHHHHTTCS
T ss_pred             CEEEEEcCCCHHHHHHHHHHHHC--CCEEEEEEecccccccccCCCceEEecccc--------------cccHhhcccCC
Confidence            79999997 99999999999998  999999999999887765422111111110              00014578999


Q ss_pred             EEEEeccC
Q 011654           81 IVFVSVNT   88 (480)
Q Consensus        81 vVii~Vpt   88 (480)
                      +||-|...
T Consensus        65 ~vi~~ag~   72 (224)
T 3h2s_A           65 AVVDALSV   72 (224)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCcc
Confidence            99999865

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=97.41  E-value=0.00053  Score=67.97  Aligned_cols=102  Identities=12%  Similarity=0.175  Sum_probs=75.8

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.          .....+++.|...|.+|.+|||.....+....++                      
T Consensus       141 ~~l~g~tvGIIG~G----------~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g----------------------  188 (330)
T 4e5n_A          141 TGLDNATVGFLGMG----------AIGLAMADRLQGWGATLQYHEAKALDTQTEQRLG----------------------  188 (330)
T ss_dssp             CCSTTCEEEEECCS----------HHHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHT----------------------
T ss_pred             CccCCCEEEEEeeC----------HHHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcC----------------------
Confidence            35789999999985          4789999999999999999999873333222222                      


Q ss_pred             eeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCC--CCChHH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEK  454 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~  454 (480)
                      +.+ .++++.++.+|+|++++... +.+.+=-.+....|++.++|||+.+  +.|.+.
T Consensus       189 ~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~a  245 (330)
T 4e5n_A          189 LRQ-VACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSVVDEAA  245 (330)
T ss_dssp             EEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHH
T ss_pred             cee-CCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCchhCHHH
Confidence            333 37899999999999998863 4444333567788998889999865  555443

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=97.40  E-value=0.0044  Score=60.35  Aligned_cols=114  Identities=11%  Similarity=0.080  Sum_probs=79.7

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+..+.+++|+|+|+.          .-+..+++.|...|++|.+|||.....+...+++                    
T Consensus       151 ~~~~l~g~~v~IiG~G----------~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g--------------------  200 (300)
T 2rir_A          151 TDYTIHGSQVAVLGLG----------RTGMTIARTFAALGANVKVGARSSAHLARITEMG--------------------  200 (300)
T ss_dssp             CSSCSTTSEEEEECCS----------HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTT--------------------
T ss_pred             cCCCCCCCEEEEEccc----------HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC--------------------
Confidence            3457889999999974          3789999999999999999999764332211211                    


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC---CChHHHhhcCcEEEEe
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI---LDVEKLREIGFIVYSI  465 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~~i  465 (480)
                      .......++++.++++|+|++++....+   +- ...+.|++..++||+-.-   .+-+..+..|..++.+
T Consensus       201 ~~~~~~~~l~~~l~~aDvVi~~~p~~~i---~~-~~~~~mk~g~~lin~a~g~~~~~~~~a~~~G~~~i~~  267 (300)
T 2rir_A          201 LVPFHTDELKEHVKDIDICINTIPSMIL---NQ-TVLSSMTPKTLILDLASRPGGTDFKYAEKQGIKALLA  267 (300)
T ss_dssp             CEEEEGGGHHHHSTTCSEEEECCSSCCB---CH-HHHTTSCTTCEEEECSSTTCSBCHHHHHHHTCEEEEC
T ss_pred             CeEEchhhHHHHhhCCCEEEECCChhhh---CH-HHHHhCCCCCEEEEEeCCCCCcCHHHHHHCCCEEEEC
Confidence            0011125688889999999999997543   32 355788888899998652   1224455678887654

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=97.40  E-value=0.0013  Score=60.12  Aligned_cols=71  Identities=17%  Similarity=0.238  Sum_probs=51.6

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||.|.| .|.+|..++..|+++  |++|++++|++++.+.+..+ ..+..-++              ++...+++.++|
T Consensus         1 MkvlVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~-~~~~~~D~--------------~d~~~~~~~~~d   63 (221)
T 3ew7_A            1 MKIGIIGATGRAGSRILEEAKNR--GHEVTAIVRNAGKITQTHKD-INILQKDI--------------FDLTLSDLSDQN   63 (221)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCSHHHHHHCSS-SEEEECCG--------------GGCCHHHHTTCS
T ss_pred             CeEEEEcCCchhHHHHHHHHHhC--CCEEEEEEcCchhhhhccCC-CeEEeccc--------------cChhhhhhcCCC
Confidence            8999999 599999999999998  99999999999888766422 11111111              010015678999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||-|...+
T Consensus        64 ~vi~~ag~~   72 (221)
T 3ew7_A           64 VVVDAYGIS   72 (221)
T ss_dssp             EEEECCCSS
T ss_pred             EEEECCcCC
Confidence            999998754

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=97.39  E-value=0.00045  Score=67.19  Aligned_cols=97  Identities=14%  Similarity=0.152  Sum_probs=74.9

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.          .....+++.|...|.+|.+|||......                           ..
T Consensus       119 ~l~g~tvGIIGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~---------------------------~~  161 (290)
T 3gvx_A          119 LLYGKALGILGYG----------GIGRRVAHLAKAFGMRVIAYTRSSVDQN---------------------------VD  161 (290)
T ss_dssp             CCTTCEEEEECCS----------HHHHHHHHHHHHHTCEEEEECSSCCCTT---------------------------CS
T ss_pred             eeecchheeeccC----------chhHHHHHHHHhhCcEEEEEeccccccc---------------------------cc
Confidence            4688999999985          4889999999999999999999754321                           13


Q ss_pred             eeecCHHHhcccccEEEEEecc-cccccccHHHHHHhcCCCCEEEEcCC--CCChHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEW-DEFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEK  454 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~  454 (480)
                      ...+++++.++++|+|+++++. ++.+.+=-....+.|++.++|||+.+  +.+.+.
T Consensus       162 ~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~a  218 (290)
T 3gvx_A          162 VISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPD  218 (290)
T ss_dssp             EECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHH
T ss_pred             cccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcc
Confidence            4556899999999999999986 44555433567788998889999864  445443

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.38  E-value=0.00017  Score=62.41  Aligned_cols=100  Identities=10%  Similarity=0.010  Sum_probs=64.9

Q ss_pred             cEEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIGA----GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      .+|+|||+    |.+|..++.+|.+.  ||+  +|++|+.+..    .  .+              .++.+..++++.-.
T Consensus        14 ~~vaVvGas~~~g~~G~~~~~~l~~~--G~~--v~~vnp~~~~----~--~i--------------~G~~~~~sl~el~~   69 (140)
T 1iuk_A           14 KTIAVLGAHKDPSRPAHYVPRYLREQ--GYR--VLPVNPRFQG----E--EL--------------FGEEAVASLLDLKE   69 (140)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHT--TCE--EEEECGGGTT----S--EE--------------TTEECBSSGGGCCS
T ss_pred             CEEEEECCCCCCCChHHHHHHHHHHC--CCE--EEEeCCCccc----C--cC--------------CCEEecCCHHHCCC
Confidence            47999999    89999999999988  897  6667765310    0  00              24666777887556


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~  145 (480)
                      ..|++++|+|..               .+.++++++.+.-. ..+++..++.    .+++.+..++.+
T Consensus        70 ~vDlavi~vp~~---------------~~~~v~~~~~~~gi-~~i~~~~g~~----~~~~~~~a~~~G  117 (140)
T 1iuk_A           70 PVDILDVFRPPS---------------ALMDHLPEVLALRP-GLVWLQSGIR----HPEFEKALKEAG  117 (140)
T ss_dssp             CCSEEEECSCHH---------------HHTTTHHHHHHHCC-SCEEECTTCC----CHHHHHHHHHTT
T ss_pred             CCCEEEEEeCHH---------------HHHHHHHHHHHcCC-CEEEEcCCcC----HHHHHHHHHHcC
Confidence            899999999842               23444555554332 3555543332    355666666543

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=97.38  E-value=0.0006  Score=66.03  Aligned_cols=108  Identities=6%  Similarity=0.074  Sum_probs=78.6

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      .+|+|+|+..          ....++..|.+.|.+|.+||+.....+...+                      .++...+
T Consensus         2 ~~i~iIG~G~----------mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~~~~   49 (287)
T 3pef_A            2 QKFGFIGLGI----------MGSAMAKNLVKAGCSVTIWNRSPEKAEELAA----------------------LGAERAA   49 (287)
T ss_dssp             CEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSGGGGHHHHH----------------------TTCEECS
T ss_pred             CEEEEEeecH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCeecC
Confidence            5899999876          8899999999999999999997554332221                      2456778


Q ss_pred             CHHHhcccccEEEEEeccc-ccccccH--HHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEE
Q 011654          405 DAYQAAKDAHGVCILTEWD-EFKTLDY--QKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYS  464 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~-~~~~~~~--~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~  464 (480)
                      +++++++++|+|++++..+ ..++.-.  +.+...+++..+|+|..+.....      .+++.|..|..
T Consensus        50 ~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~  118 (287)
T 3pef_A           50 TPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLE  118 (287)
T ss_dssp             SHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence            9999999999999999865 3333211  45556777777999998766432      23355777764

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=97.38  E-value=0.00068  Score=69.16  Aligned_cols=70  Identities=20%  Similarity=0.353  Sum_probs=52.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|+|||+|.||..++..|...  |. +|+++|+++++.+.+.+.           +     .......+++.+.+.++|
T Consensus       168 ~~VlIiGaG~iG~~~a~~l~~~--G~~~V~v~~r~~~ra~~la~~-----------~-----g~~~~~~~~l~~~l~~aD  229 (404)
T 1gpj_A          168 KTVLVVGAGEMGKTVAKSLVDR--GVRAVLVANRTYERAVELARD-----------L-----GGEAVRFDELVDHLARSD  229 (404)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH--CCSEEEEECSSHHHHHHHHHH-----------H-----TCEECCGGGHHHHHHTCS
T ss_pred             CEEEEEChHHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHH-----------c-----CCceecHHhHHHHhcCCC
Confidence            4799999999999999999987  87 999999999887555421           0     000001135566678999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||.|+|.+
T Consensus       230 vVi~at~~~  238 (404)
T 1gpj_A          230 VVVSATAAP  238 (404)
T ss_dssp             EEEECCSSS
T ss_pred             EEEEccCCC
Confidence            999998764

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=97.37  E-value=0.00028  Score=69.05  Aligned_cols=110  Identities=15%  Similarity=0.172  Sum_probs=78.2

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      +||+++||..          +...+++.|.+.|++|.+||......+...+                      .+...++
T Consensus         4 ~kIgfIGlG~----------MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~----------------------~Ga~~a~   51 (300)
T 3obb_A            4 KQIAFIGLGH----------MGAPMATNLLKAGYLLNVFDLVQSAVDGLVA----------------------AGASAAR   51 (300)
T ss_dssp             CEEEEECCST----------THHHHHHHHHHTTCEEEEECSSHHHHHHHHH----------------------TTCEECS
T ss_pred             CEEEEeeehH----------HHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH----------------------cCCEEcC
Confidence            5899999965          8999999999999999999986443322221                      2456788


Q ss_pred             CHHHhcccccEEEEEecccc-ccccc--HHHHHHhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEec
Q 011654          405 DAYQAAKDAHGVCILTEWDE-FKTLD--YQKIFDNMRKPAYIFDGRNILDV------EKLREIGFIVYSIG  466 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~-~~~~~--~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG  466 (480)
                      |+.++++++|+|+++...++ .++.-  ...+.+.+++..+|||+..+-+.      +.+++.|+.|.--.
T Consensus        52 s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~~lDaP  122 (300)
T 3obb_A           52 SARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAP  122 (300)
T ss_dssp             SHHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCEEEECC
T ss_pred             CHHHHHhcCCceeecCCchHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEecC
Confidence            99999999999999877654 22211  11233455666799999988753      23446789887543

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=97.36  E-value=0.00027  Score=71.21  Aligned_cols=72  Identities=19%  Similarity=0.206  Sum_probs=49.6

Q ss_pred             EEEEEcCChhHHHHHHHHHHc------CCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654            3 KICCIGAGYVGGPTMAVIALK------CPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~------~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a   75 (480)
                      ||||||+|.||...+..+...      .++.+|+ ++|+++++.+.+.+..                 +.-++.+|+++.
T Consensus        27 rvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~-----------------g~~~~y~d~~el   89 (393)
T 4fb5_A           27 GIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEF-----------------GFEKATADWRAL   89 (393)
T ss_dssp             EEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHH-----------------TCSEEESCHHHH
T ss_pred             cEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHh-----------------CCCeecCCHHHH
Confidence            699999999998777665431      1355655 6799999888776420                 122567899987


Q ss_pred             hc--cCcEEEEeccCCCC
Q 011654           76 VA--EADIVFVSVNTPTK   91 (480)
Q Consensus        76 ~~--~aDvVii~Vptp~~   91 (480)
                      ++  +.|+|+||+|+..+
T Consensus        90 l~~~~iDaV~IatP~~~H  107 (393)
T 4fb5_A           90 IADPEVDVVSVTTPNQFH  107 (393)
T ss_dssp             HHCTTCCEEEECSCGGGH
T ss_pred             hcCCCCcEEEECCChHHH
Confidence            75  57999999886543

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=97.35  E-value=0.00068  Score=66.83  Aligned_cols=110  Identities=17%  Similarity=0.188  Sum_probs=79.2

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      +..+|+|+|+..          ....++..|.+.|.+|.+||+.....+...+                      .++..
T Consensus        30 ~~~~I~iIG~G~----------mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~----------------------~g~~~   77 (320)
T 4dll_A           30 YARKITFLGTGS----------MGLPMARRLCEAGYALQVWNRTPARAASLAA----------------------LGATI   77 (320)
T ss_dssp             CCSEEEEECCTT----------THHHHHHHHHHTTCEEEEECSCHHHHHHHHT----------------------TTCEE
T ss_pred             CCCEEEEECccH----------HHHHHHHHHHhCCCeEEEEcCCHHHHHHHHH----------------------CCCEe
Confidence            456999999966          8899999999999999999986543222211                      24567


Q ss_pred             ecCHHHhcccccEEEEEecccc-cccccHH--HHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011654          403 VWDAYQAAKDAHGVCILTEWDE-FKTLDYQ--KIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSI  465 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~--~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i  465 (480)
                      .++++++++++|+|++++..+. .+.. ..  .+...+++..+|||..+.....      .+++.|..|..-
T Consensus        78 ~~~~~e~~~~aDvVi~~vp~~~~~~~v-~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~~~~  148 (320)
T 4dll_A           78 HEQARAAARDADIVVSMLENGAVVQDV-LFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAHLDT  148 (320)
T ss_dssp             ESSHHHHHTTCSEEEECCSSHHHHHHH-HTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             eCCHHHHHhcCCEEEEECCCHHHHHHH-HcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            7899999999999999998753 3321 11  4455677777999998876532      234557777643

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.34  E-value=0.0003  Score=67.58  Aligned_cols=96  Identities=9%  Similarity=0.039  Sum_probs=65.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .++.|||+|-+|.+++..|++.  |.+|++++|++++.+.+.+-                  + +... ++++ +.++|+
T Consensus       119 k~vlvlGaGGaaraia~~L~~~--G~~v~V~nRt~~ka~~la~~------------------~-~~~~-~~~~-l~~~Di  175 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQ--GLQVSVLNRSSRGLDFFQRL------------------G-CDCF-MEPP-KSAFDL  175 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCTTHHHHHHH------------------T-CEEE-SSCC-SSCCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHC------------------C-CeEe-cHHH-hccCCE
Confidence            4799999999999999999998  89999999999888776520                  0 1121 2223 348999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      ||-|+|.....+     ...+.+       .+...++++.+|++.++.| .|
T Consensus       176 VInaTp~Gm~~~-----~~l~~~-------~l~~~l~~~~~v~D~vY~P-~T  214 (269)
T 3phh_A          176 IINATSASLHNE-----LPLNKE-------VLKGYFKEGKLAYDLAYGF-LT  214 (269)
T ss_dssp             EEECCTTCCCCS-----CSSCHH-------HHHHHHHHCSEEEESCCSS-CC
T ss_pred             EEEcccCCCCCC-----CCCChH-------HHHhhCCCCCEEEEeCCCC-ch
Confidence            999987653220     011211       1222345678999988876 44

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=97.33  E-value=0.00077  Score=66.99  Aligned_cols=93  Identities=8%  Similarity=0.074  Sum_probs=67.8

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +..+.+++|+|+|+.-          ....+++.|...|.+|.+|||.....                           .
T Consensus       166 ~~~l~gktiGIIGlG~----------IG~~vA~~l~~~G~~V~~~dr~~~~~---------------------------~  208 (340)
T 4dgs_A          166 GHSPKGKRIGVLGLGQ----------IGRALASRAEAFGMSVRYWNRSTLSG---------------------------V  208 (340)
T ss_dssp             CCCCTTCEEEEECCSH----------HHHHHHHHHHTTTCEEEEECSSCCTT---------------------------S
T ss_pred             cccccCCEEEEECCCH----------HHHHHHHHHHHCCCEEEEEcCCcccc---------------------------c
Confidence            3567899999999854          88999999999999999999975431                           1


Q ss_pred             ceeeecCHHHhcccccEEEEEecc-cccccccHHHHHHhcCCCCEEEEcCC
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEW-DEFKTLDYQKIFDNMRKPAYIFDGRN  448 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h-~~~~~~~~~~~~~~~~~~~~i~D~~~  448 (480)
                      ......+++++++++|+|+++++- ++-+.+=-.+..+.|++.+++||+.+
T Consensus       209 ~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aR  259 (340)
T 4dgs_A          209 DWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVAR  259 (340)
T ss_dssp             CCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSC
T ss_pred             CceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCC
Confidence            234457899999999999999885 33344322456678898889999854

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=97.33  E-value=0.00095  Score=65.00  Aligned_cols=108  Identities=11%  Similarity=0.079  Sum_probs=80.1

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      ..+|+|+|+.+          ....++..|.+.|.+|.+||+.....+...+                      .++...
T Consensus        15 ~~~I~vIG~G~----------mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~~~   62 (296)
T 3qha_A           15 QLKLGYIGLGN----------MGAPMATRMTEWPGGVTVYDIRIEAMTPLAE----------------------AGATLA   62 (296)
T ss_dssp             CCCEEEECCST----------THHHHHHHHTTSTTCEEEECSSTTTSHHHHH----------------------TTCEEC
T ss_pred             CCeEEEECcCH----------HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----------------------CCCEEc
Confidence            35899999976          8899999999999999999987654332222                      235677


Q ss_pred             cCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011654          404 WDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSI  465 (480)
Q Consensus       404 ~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i  465 (480)
                      ++++++++ +|+|++++..+. .++ -.+.+...+++..+|+|..+.....      .+.+.|+.|..-
T Consensus        63 ~~~~~~~~-aDvvi~~vp~~~~~~~-v~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~~  129 (296)
T 3qha_A           63 DSVADVAA-ADLIHITVLDDAQVRE-VVGELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDA  129 (296)
T ss_dssp             SSHHHHTT-SSEEEECCSSHHHHHH-HHHHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred             CCHHHHHh-CCEEEEECCChHHHHH-HHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEEEeC
Confidence            89999999 999999998763 333 2366777777778999998876432      233457777643

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=97.32  E-value=0.0012  Score=65.46  Aligned_cols=100  Identities=17%  Similarity=0.168  Sum_probs=75.1

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          -...+++.|...|.+|.+|||....+. ...+                      +
T Consensus       161 ~~l~g~tvgIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------g  207 (335)
T 2g76_A          161 TELNGKTLGILGLGR----------IGREVATRMQSFGMKTIGYDPIISPEV-SASF----------------------G  207 (335)
T ss_dssp             CCCTTCEEEEECCSH----------HHHHHHHHHHTTTCEEEEECSSSCHHH-HHHT----------------------T
T ss_pred             cCCCcCEEEEEeECH----------HHHHHHHHHHHCCCEEEEECCCcchhh-hhhc----------------------C
Confidence            467899999999854          788999999999999999999876542 2222                      1


Q ss_pred             eeeecCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCC--CCChH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRN--ILDVE  453 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~  453 (480)
                      +.+ .++++.++++|+|+++++... .+.+=-..+.+.|++.+++||+.+  +.+.+
T Consensus       208 ~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~~  263 (335)
T 2g76_A          208 VQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEG  263 (335)
T ss_dssp             CEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCHH
T ss_pred             cee-CCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCHH
Confidence            233 478999999999999988853 454322466788998889999755  44543

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=97.32  E-value=0.00071  Score=67.53  Aligned_cols=101  Identities=16%  Similarity=0.198  Sum_probs=75.6

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.-          ....+++.|...|++|.+|||...... ...+                      ++
T Consensus       165 ~l~g~tvGIIG~G~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------g~  211 (347)
T 1mx3_A          165 RIRGETLGIIGLGR----------VGQAVALRAKAFGFNVLFYDPYLSDGV-ERAL----------------------GL  211 (347)
T ss_dssp             CCTTCEEEEECCSH----------HHHHHHHHHHTTTCEEEEECTTSCTTH-HHHH----------------------TC
T ss_pred             CCCCCEEEEEeECH----------HHHHHHHHHHHCCCEEEEECCCcchhh-Hhhc----------------------CC
Confidence            57899999999854          789999999999999999999865432 2222                      23


Q ss_pred             eeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCC--CChHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNI--LDVEK  454 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~--~~~~~  454 (480)
                      .+..++++.++++|+|++++.-. +.+++=-.+..+.|++.+++||+.+-  .+.+.
T Consensus       212 ~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~a  268 (347)
T 1mx3_A          212 QRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKA  268 (347)
T ss_dssp             EECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHH
T ss_pred             eecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHH
Confidence            44568899999999999998874 45553225566789988899998663  45443

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=97.32  E-value=0.00036  Score=67.00  Aligned_cols=69  Identities=9%  Similarity=0.053  Sum_probs=50.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ||||.|.|+|++|..++..|.++  |++|++++++++..+.+......+..            +.+   +|++  +.++|
T Consensus         5 ~~~ilVtGaG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~------------~D~---~d~~--~~~~d   65 (286)
T 3ius_A            5 TGTLLSFGHGYTARVLSRALAPQ--GWRIIGTSRNPDQMEAIRASGAEPLL------------WPG---EEPS--LDGVT   65 (286)
T ss_dssp             CCEEEEETCCHHHHHHHHHHGGG--TCEEEEEESCGGGHHHHHHTTEEEEE------------SSS---SCCC--CTTCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHC--CCEEEEEEcChhhhhhHhhCCCeEEE------------ecc---cccc--cCCCC
Confidence            47999999999999999999998  99999999999877766542111100            001   1222  57899


Q ss_pred             EEEEeccC
Q 011654           81 IVFVSVNT   88 (480)
Q Consensus        81 vVii~Vpt   88 (480)
                      +||-|...
T Consensus        66 ~vi~~a~~   73 (286)
T 3ius_A           66 HLLISTAP   73 (286)
T ss_dssp             EEEECCCC
T ss_pred             EEEECCCc
Confidence            99998763

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=97.31  E-value=0.0018  Score=63.93  Aligned_cols=115  Identities=14%  Similarity=0.083  Sum_probs=70.7

Q ss_pred             CcEEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHH--HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-
Q 011654            1 MVKICCIGAGYVGGP-TMAVIALKCPKIEVAVVDISVS--RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-   76 (480)
Q Consensus         1 imkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-   76 (480)
                      |+||.|||+|-+|.+ +|..|.++  |++|+++|.++.  ..+.|.+...                 .+..-.+++... 
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~--G~~V~~~D~~~~~~~~~~L~~~gi-----------------~v~~g~~~~~l~~   64 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEA--GFEVSGCDAKMYPPMSTQLEALGI-----------------DVYEGFDAAQLDE   64 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHT--TCEEEEEESSCCTTHHHHHHHTTC-----------------EEEESCCGGGGGS
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhC--CCEEEEEcCCCCcHHHHHHHhCCC-----------------EEECCCCHHHcCC
Confidence            689999999999996 88888888  999999998642  3344443211                 122223444422 


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHH----------HHHhhC-CCCCEEEEecCCccchHHH-HHHHHHhc
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------MIANVS-NSNKIVVEKSTVPVKTAEA-IEKILTHN  144 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l-~~~~iVi~~STv~~gt~~~-l~~~l~~~  144 (480)
                      .++|+||++-.-|.           |...++.+.+          -+...+ +...+|-+..|..-.||.. +..+|++.
T Consensus        65 ~~~d~vV~Spgi~~-----------~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~  133 (326)
T 3eag_A           65 FKADVYVIGNVAKR-----------GMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYA  133 (326)
T ss_dssp             CCCSEEEECTTCCT-----------TCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCcCC-----------CCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence            47999998743332           2223333322          123322 3346777777877666665 56778765


Q ss_pred             C
Q 011654          145 S  145 (480)
Q Consensus       145 ~  145 (480)
                      +
T Consensus       134 g  134 (326)
T 3eag_A          134 G  134 (326)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=97.29  E-value=0.00097  Score=65.83  Aligned_cols=100  Identities=12%  Similarity=0.110  Sum_probs=75.6

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECC-CCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDP-QVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      .+.+++|+|+|+.-          ....+++.|...|.+|.+||| ....+ ...++                      +
T Consensus       143 ~l~g~~vgIIG~G~----------IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~~----------------------g  189 (320)
T 1gdh_A          143 KLDNKTLGIYGFGS----------IGQALAKRAQGFDMDIDYFDTHRASSS-DEASY----------------------Q  189 (320)
T ss_dssp             CCTTCEEEEECCSH----------HHHHHHHHHHTTTCEEEEECSSCCCHH-HHHHH----------------------T
T ss_pred             CCCCCEEEEECcCH----------HHHHHHHHHHHCCCEEEEECCCCcChh-hhhhc----------------------C
Confidence            56899999999854          789999999999999999999 77653 22222                      2


Q ss_pred             eeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCC--CChH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNI--LDVE  453 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~--~~~~  453 (480)
                      +.+.+++++.++++|+|+++++.. +.+++=-....+.|++.+++||+.+-  .+.+
T Consensus       190 ~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg~~vd~~  246 (320)
T 1gdh_A          190 ATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNE  246 (320)
T ss_dssp             CEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHH
T ss_pred             cEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCCcccCHH
Confidence            344557899999999999999874 45543224566889988899999764  5644

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=97.29  E-value=0.001  Score=67.32  Aligned_cols=102  Identities=11%  Similarity=0.127  Sum_probs=76.8

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.          .....+++.|...|.+|.+||+.....+....++                      
T Consensus       187 ~~l~gktvGIIGlG----------~IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G----------------------  234 (393)
T 2nac_A          187 YDLEAMHVGTVAAG----------RIGLAVLRRLAPFDVHLHYTDRHRLPESVEKELN----------------------  234 (393)
T ss_dssp             CCCTTCEEEEECCS----------HHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHT----------------------
T ss_pred             ccCCCCEEEEEeEC----------HHHHHHHHHHHhCCCEEEEEcCCccchhhHhhcC----------------------
Confidence            46789999999985          4889999999999999999999865443333322                      


Q ss_pred             eeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCC--CCChH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRN--ILDVE  453 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~  453 (480)
                      +.+..++++.++++|+|++++... +.+++=-....+.|++.+++||+.+  +.+.+
T Consensus       235 ~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~  291 (393)
T 2nac_A          235 LTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRD  291 (393)
T ss_dssp             CEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHH
T ss_pred             ceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHH
Confidence            344467899999999999999863 4454322566788998889999876  45543

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=97.28  E-value=0.0012  Score=65.48  Aligned_cols=95  Identities=18%  Similarity=0.223  Sum_probs=73.4

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+..          .+..+++.|...|.+|.+||+.... +....++                      
T Consensus       146 ~~l~g~~vgIIG~G~----------iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g----------------------  192 (334)
T 2dbq_A          146 YDVYGKTIGIIGLGR----------IGQAIAKRAKGFNMRILYYSRTRKE-EVERELN----------------------  192 (334)
T ss_dssp             CCCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHC----------------------
T ss_pred             cCCCCCEEEEEccCH----------HHHHHHHHHHhCCCEEEEECCCcch-hhHhhcC----------------------
Confidence            457889999999866          8899999999999999999998766 3222221                      


Q ss_pred             eeeecCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCC
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRN  448 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~  448 (480)
                      +.+ .+++++++++|+|++++.... .+.+=-.++...|++..+|+|+.+
T Consensus       193 ~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~sr  241 (334)
T 2dbq_A          193 AEF-KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIAR  241 (334)
T ss_dssp             CEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSC
T ss_pred             ccc-CCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECCC
Confidence            233 478899999999999998765 454332566778988889999865

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=97.28  E-value=0.00091  Score=66.30  Aligned_cols=102  Identities=11%  Similarity=0.161  Sum_probs=75.0

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+..          .+..+++.|...|.+|.+||+.....+....+                      +
T Consensus       151 ~~l~g~~vgIIG~G~----------iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~----------------------g  198 (330)
T 2gcg_A          151 YGLTQSTVGIIGLGR----------IGQAIARRLKPFGVQRFLYTGRQPRPEEAAEF----------------------Q  198 (330)
T ss_dssp             CCCTTCEEEEECCSH----------HHHHHHHHHGGGTCCEEEEESSSCCHHHHHTT----------------------T
T ss_pred             cCCCCCEEEEECcCH----------HHHHHHHHHHHCCCEEEEECCCCcchhHHHhc----------------------C
Confidence            357889999999866          88999999999999999999976532222211                      2


Q ss_pred             eeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCC--CChHH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNI--LDVEK  454 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~--~~~~~  454 (480)
                      +.+. +++++++++|+|++++... +.+.+=-.++.+.|++.+++||+.+.  .+.+.
T Consensus       199 ~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~srg~~v~~~a  255 (330)
T 2gcg_A          199 AEFV-STPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINISRGDVVNQDD  255 (330)
T ss_dssp             CEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHH
T ss_pred             ceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECCCCcccCHHH
Confidence            3444 7889999999999999875 34443225566788887899998764  55443

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.27  E-value=0.00075  Score=58.54  Aligned_cols=98  Identities=9%  Similarity=-0.034  Sum_probs=63.7

Q ss_pred             cEEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIGA----GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      .+|+|||+    |.+|..++..|.+.  |++  +|++|+.. +.+                     .++.+..++++...
T Consensus        23 ~~iaVVGas~~~g~~G~~~~~~l~~~--G~~--v~~Vnp~~-~~i---------------------~G~~~y~sl~~l~~   76 (144)
T 2d59_A           23 KKIALVGASPKPERDANIVMKYLLEH--GYD--VYPVNPKY-EEV---------------------LGRKCYPSVLDIPD   76 (144)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHT--TCE--EEEECTTC-SEE---------------------TTEECBSSGGGCSS
T ss_pred             CEEEEEccCCCCCchHHHHHHHHHHC--CCE--EEEECCCC-CeE---------------------CCeeccCCHHHcCC
Confidence            47999999    79999999999987  897  55666542 100                     24566677887556


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~  145 (480)
                      ..|++++|||.+               .+.++++++.+.-. ..++ +.++..   .+++.+.+++.+
T Consensus        77 ~vDlvvi~vp~~---------------~~~~vv~~~~~~gi-~~i~-~~~g~~---~~~l~~~a~~~G  124 (144)
T 2d59_A           77 KIEVVDLFVKPK---------------LTMEYVEQAIKKGA-KVVW-FQYNTY---NREASKKADEAG  124 (144)
T ss_dssp             CCSEEEECSCHH---------------HHHHHHHHHHHHTC-SEEE-ECTTCC---CHHHHHHHHHTT
T ss_pred             CCCEEEEEeCHH---------------HHHHHHHHHHHcCC-CEEE-ECCCch---HHHHHHHHHHcC
Confidence            899999998842               34566666555332 3444 333322   355666666543

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=97.26  E-value=0.0008  Score=66.02  Aligned_cols=110  Identities=8%  Similarity=0.043  Sum_probs=78.7

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      +-.+|+|+|+..          ....++..|.+.|.+|.+||+.....+...+                      .++..
T Consensus        20 ~m~~I~iIG~G~----------mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~----------------------~g~~~   67 (310)
T 3doj_A           20 HMMEVGFLGLGI----------MGKAMSMNLLKNGFKVTVWNRTLSKCDELVE----------------------HGASV   67 (310)
T ss_dssp             CSCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSGGGGHHHHH----------------------TTCEE
T ss_pred             cCCEEEEECccH----------HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----------------------CCCeE
Confidence            446999999976          8999999999999999999997654332222                      23566


Q ss_pred             ecCHHHhcccccEEEEEecccc-ccccc--HHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEE
Q 011654          403 VWDAYQAAKDAHGVCILTEWDE-FKTLD--YQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYS  464 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~-~~~~~--~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~  464 (480)
                      .+++.++++++|+|++++..+. .++.-  .+.+...+++..+|+|+.++....      .+.+.|..|..
T Consensus        68 ~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~v~  138 (310)
T 3doj_A           68 CESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGRFVE  138 (310)
T ss_dssp             CSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             cCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEe
Confidence            7899999999999999997653 33211  033445666777999998876432      23355777755

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=97.25  E-value=0.0016  Score=63.93  Aligned_cols=100  Identities=22%  Similarity=0.265  Sum_probs=74.8

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          ....+++.|...|++|.+|||....+ ...++                      +
T Consensus       138 ~~l~g~~vgIiG~G~----------IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~----------------------g  184 (307)
T 1wwk_A          138 IELEGKTIGIIGFGR----------IGYQVAKIANALGMNILLYDPYPNEE-RAKEV----------------------N  184 (307)
T ss_dssp             CCCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSCCHH-HHHHT----------------------T
T ss_pred             cccCCceEEEEccCH----------HHHHHHHHHHHCCCEEEEECCCCChh-hHhhc----------------------C
Confidence            357899999999854          78999999999999999999988763 22222                      1


Q ss_pred             eeeecCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCC--CCChH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRN--ILDVE  453 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~  453 (480)
                      +.+ .++++.++++|+|+++++... .+++=-....+.|++.+++||+.+  +.+.+
T Consensus       185 ~~~-~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~  240 (307)
T 1wwk_A          185 GKF-VDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTN  240 (307)
T ss_dssp             CEE-CCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHH
T ss_pred             ccc-cCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHH
Confidence            233 378899999999999988743 454322456678998889999876  45544

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=97.23  E-value=0.00076  Score=68.34  Aligned_cols=41  Identities=15%  Similarity=0.195  Sum_probs=35.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      .+|+|||+|.+|...+..+...  |.+|+++|+++++.+.+.+
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~--Ga~V~~~d~~~~~~~~~~~  213 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVES  213 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHH
Confidence            4799999999999999988877  8899999999887766654

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=97.23  E-value=0.00038  Score=69.05  Aligned_cols=61  Identities=15%  Similarity=0.201  Sum_probs=46.5

Q ss_pred             cEEEEEcCChhHH-HHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc-
Q 011654            2 VKICCIGAGYVGG-PTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE-   78 (480)
Q Consensus         2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~-   78 (480)
                      +||+|||+|.||. ..+..|.+. ++.+|+ ++|+++++                         .++...+|+++.+++ 
T Consensus        26 ~rvgiiG~G~ig~~~~~~~l~~~-~~~~lvav~d~~~~~-------------------------~g~~~~~~~~~ll~~~   79 (330)
T 4ew6_A           26 INLAIVGVGKIVRDQHLPSIAKN-ANFKLVATASRHGTV-------------------------EGVNSYTTIEAMLDAE   79 (330)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHHC-TTEEEEEEECSSCCC-------------------------TTSEEESSHHHHHHHC
T ss_pred             ceEEEEecCHHHHHHHHHHHHhC-CCeEEEEEEeCChhh-------------------------cCCCccCCHHHHHhCC
Confidence            5899999999998 688888875 578865 57887431                         124567888887764 


Q ss_pred             --CcEEEEeccC
Q 011654           79 --ADIVFVSVNT   88 (480)
Q Consensus        79 --aDvVii~Vpt   88 (480)
                        .|+|+||+|+
T Consensus        80 ~~vD~V~i~tp~   91 (330)
T 4ew6_A           80 PSIDAVSLCMPP   91 (330)
T ss_dssp             TTCCEEEECSCH
T ss_pred             CCCCEEEEeCCc
Confidence              8999999875

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.23  E-value=0.0021  Score=65.12  Aligned_cols=93  Identities=12%  Similarity=0.151  Sum_probs=66.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHH---HHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRI---AAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v---~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      +||+|||.|.-|.+-|.+|.+.  |.+|++=-|.....   ..+.+                ....++++. +++++++.
T Consensus        38 K~IaVIGyGsQG~AqAlNLRDS--Gv~V~Vglr~~s~~e~~~S~~~----------------A~~~Gf~v~-~~~eA~~~   98 (491)
T 3ulk_A           38 KKVVIVGCGAQGLNQGLNMRDS--GLDISYALRKEAIAEKRASWRK----------------ATENGFKVG-TYEELIPQ   98 (491)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHT--TCEEEEEECHHHHHTTCHHHHH----------------HHHTTCEEE-EHHHHGGG
T ss_pred             CEEEEeCCChHhHHHHhHHHhc--CCcEEEEeCCCCcccccchHHH----------------HHHCCCEec-CHHHHHHh
Confidence            5899999999999999999998  99998765522210   01110                001245544 57889999


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      +|+|++-+|...+               ..+.+.|.+++++|..+.....
T Consensus        99 ADvV~~L~PD~~q---------------~~vy~~I~p~lk~G~~L~faHG  133 (491)
T 3ulk_A           99 ADLVINLTPDKQH---------------SDVVRTVQPLMKDGAALGYSHG  133 (491)
T ss_dssp             CSEEEECSCGGGH---------------HHHHHHHGGGSCTTCEEEESSC
T ss_pred             CCEEEEeCChhhH---------------HHHHHHHHhhCCCCCEEEecCc
Confidence            9999999885321               3456789999999999987544

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=97.22  E-value=0.00017  Score=71.72  Aligned_cols=86  Identities=19%  Similarity=0.183  Sum_probs=51.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHC-CCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNG-DQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~-~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      |+||+|+|+|+||..++..|.++ +++++++ .|++++....+.. .....+. .+...+.......+.+..++++.+.+
T Consensus         1 mikVgIiGaG~iG~~l~r~L~~~-~~~elvav~d~~~~~~~~~~~~~g~~~~~-~~~~~v~~~~~~~l~v~~~~~~~~~~   78 (337)
T 1cf2_P            1 MKAVAINGYGTVGKRVADAIAQQ-DDMKVIGVSKTRPDFEARMALKKGYDLYV-AIPERVKLFEKAGIEVAGTVDDMLDE   78 (337)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTS-SSEEEEEEEESSCSHHHHHHHHTTCCEEE-SSGGGHHHHHHTTCCCCEEHHHHHHT
T ss_pred             CeEEEEEeECHHHHHHHHHHHcC-CCcEEEEEEcCChhHHHHhcCCcchhhcc-ccccceeeecCCceEEcCCHHHHhcC
Confidence            68999999999999999999875 4777755 5776554443332 1111111 00000000001234444466666679


Q ss_pred             CcEEEEeccC
Q 011654           79 ADIVFVSVNT   88 (480)
Q Consensus        79 aDvVii~Vpt   88 (480)
                      +|+||.|+|.
T Consensus        79 vDvV~~atp~   88 (337)
T 1cf2_P           79 ADIVIDCTPE   88 (337)
T ss_dssp             CSEEEECCST
T ss_pred             CCEEEECCCc
Confidence            9999999774

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=97.22  E-value=0.0008  Score=66.98  Aligned_cols=84  Identities=20%  Similarity=0.270  Sum_probs=54.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHH-CCCCCCCCC-ChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWN-GDQLPIYEP-GLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~-~~~~~~~e~-~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      |+||||+|+|+||..++..|..+ ++.+|+ +.|++++....+. ....+.+.. ..++++.   ..++..+.+.++...
T Consensus         1 ~ikVgIiGaG~iG~~~~r~L~~~-p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~---~~~v~v~~~~e~l~~   76 (340)
T 1b7g_O            1 MVNVAVNGYGTIGKRVADAIIKQ-PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFE---ESGIPVAGTVEDLIK   76 (340)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC-TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHH---TTTCCCCCCHHHHHH
T ss_pred             CeEEEEEecCHHHHHHHHHHHcC-CCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhc---ccccccccCHhHhhc
Confidence            57999999999999999998865 567765 4577755443332 222333221 2333332   234555667777667


Q ss_pred             cCcEEEEeccC
Q 011654           78 EADIVFVSVNT   88 (480)
Q Consensus        78 ~aDvVii~Vpt   88 (480)
                      ++|+||+|+|.
T Consensus        77 ~vDvV~~aTp~   87 (340)
T 1b7g_O           77 TSDIVVDTTPN   87 (340)
T ss_dssp             HCSEEEECCST
T ss_pred             CCCEEEECCCC
Confidence            89999999774

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=97.22  E-value=0.0013  Score=65.27  Aligned_cols=93  Identities=14%  Similarity=0.224  Sum_probs=72.3

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+..          ....+++.|...|.+|.+||+....+ ...++                      ++
T Consensus       143 ~l~g~~vgIIG~G~----------iG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~----------------------g~  189 (333)
T 2d0i_A          143 SLYGKKVGILGMGA----------IGKAIARRLIPFGVKLYYWSRHRKVN-VEKEL----------------------KA  189 (333)
T ss_dssp             CSTTCEEEEECCSH----------HHHHHHHHHGGGTCEEEEECSSCCHH-HHHHH----------------------TE
T ss_pred             CCCcCEEEEEccCH----------HHHHHHHHHHHCCCEEEEECCCcchh-hhhhc----------------------Cc
Confidence            57899999999865          88999999999999999999987752 22222                      13


Q ss_pred             eeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCC
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRN  448 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~  448 (480)
                      .+ .+++++++++|+|++++... +.+.+=-+.+...|++. +++|+.+
T Consensus       190 ~~-~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~sr  236 (333)
T 2d0i_A          190 RY-MDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGR  236 (333)
T ss_dssp             EE-CCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSC
T ss_pred             ee-cCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCC
Confidence            33 37888999999999999987 56654334566788888 9999865

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=97.20  E-value=0.0002  Score=71.18  Aligned_cols=83  Identities=13%  Similarity=0.180  Sum_probs=53.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHC-CCCCCCC--C-ChHHHHHhhcCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNG-DQLPIYE--P-GLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~-~~~~~~e--~-~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      +||||+|+|+||..++..|... ++.+++ +.|++++....+.+ .....+.  + .+..+ .   .+.+.+.+++++.+
T Consensus         3 irVgIiG~G~iG~~~~r~l~~~-~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~-~---~~~~~v~~d~~~l~   77 (334)
T 2czc_A            3 VKVGVNGYGTIGKRVAYAVTKQ-DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRF-E---KEGFEVAGTLNDLL   77 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC-TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHH-H---HHTCCCSCBHHHHH
T ss_pred             cEEEEEeEhHHHHHHHHHHhcC-CCCEEEEEEcCCHHHHHHHHHhcCccccccccccceec-c---CCceEEcCcHHHhc
Confidence            5999999999999999998875 567765 46887766655443 1111110  0 01011 0   11234556888877


Q ss_pred             ccCcEEEEeccCC
Q 011654           77 AEADIVFVSVNTP   89 (480)
Q Consensus        77 ~~aDvVii~Vptp   89 (480)
                      .++|+|++|+|..
T Consensus        78 ~~vDvV~~aTp~~   90 (334)
T 2czc_A           78 EKVDIIVDATPGG   90 (334)
T ss_dssp             TTCSEEEECCSTT
T ss_pred             cCCCEEEECCCcc
Confidence            8999999997753

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=97.20  E-value=0.00096  Score=66.41  Aligned_cols=99  Identities=18%  Similarity=0.238  Sum_probs=74.1

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.-          -...+++.|...|.+|.+|||..... . .                       ...
T Consensus       145 ~l~gktvgIiGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~-~-~-----------------------~~~  189 (343)
T 2yq5_A          145 EIYNLTVGLIGVGH----------IGSAVAEIFSAMGAKVIAYDVAYNPE-F-E-----------------------PFL  189 (343)
T ss_dssp             CGGGSEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSCCGG-G-T-----------------------TTC
T ss_pred             ccCCCeEEEEecCH----------HHHHHHHHHhhCCCEEEEECCChhhh-h-h-----------------------ccc
Confidence            46789999999854          78999999999999999999987542 1 0                       112


Q ss_pred             eeecCHHHhcccccEEEEEecc-cccccccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEW-DEFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      .+. +++++++++|+|+++++. ++-+.+=-.+..+.|++.+++||+.+  +.|.+.+
T Consensus       190 ~~~-~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL  246 (343)
T 2yq5_A          190 TYT-DFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARGELVDTGAL  246 (343)
T ss_dssp             EEC-CHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHHH
T ss_pred             ccc-CHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCChhhhHHHH
Confidence            333 899999999999999986 33344322456678998889999975  5565443

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=97.19  E-value=0.0013  Score=66.17  Aligned_cols=103  Identities=20%  Similarity=0.224  Sum_probs=77.1

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCE-EEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAK-LSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~-V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      ..+.+++|+|+|+.          .....+++.|...|++ |.+||+.....+....+                      
T Consensus       160 ~~l~g~tvgIIG~G----------~IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~----------------------  207 (364)
T 2j6i_A          160 YDIEGKTIATIGAG----------RIGYRVLERLVPFNPKELLYYDYQALPKDAEEKV----------------------  207 (364)
T ss_dssp             CCSTTCEEEEECCS----------HHHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHT----------------------
T ss_pred             ccCCCCEEEEECcC----------HHHHHHHHHHHhCCCcEEEEECCCccchhHHHhc----------------------
Confidence            46789999999985          4889999999999997 99999876443332222                      


Q ss_pred             ceeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCC--CCChHH
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEK  454 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~  454 (480)
                      ++....++++.++++|+|++++... +.+.+=-....+.|++.++|||+.+  +.+.+.
T Consensus       208 g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~a  266 (364)
T 2j6i_A          208 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAICVAED  266 (364)
T ss_dssp             TEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHH
T ss_pred             CcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEEECCCCchhCHHH
Confidence            2344568899999999999999885 4444322456688998889999876  456543

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=97.18  E-value=0.0012  Score=65.38  Aligned_cols=93  Identities=11%  Similarity=0.152  Sum_probs=72.3

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          ....+++.|...|.+|.+||+.....                           .+
T Consensus       160 ~~l~g~~vgIIG~G~----------iG~~vA~~l~~~G~~V~~~dr~~~~~---------------------------~g  202 (333)
T 3ba1_A          160 TKFSGKRVGIIGLGR----------IGLAVAERAEAFDCPISYFSRSKKPN---------------------------TN  202 (333)
T ss_dssp             CCCTTCCEEEECCSH----------HHHHHHHHHHTTTCCEEEECSSCCTT---------------------------CC
T ss_pred             cccCCCEEEEECCCH----------HHHHHHHHHHHCCCEEEEECCCchhc---------------------------cC
Confidence            467899999999855          88999999999999999999975421                           12


Q ss_pred             eeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCC
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNI  449 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~  449 (480)
                      .....+++++++++|+|++++... +.+.+=-.++.+.|++.++|||+.+-
T Consensus       203 ~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG  253 (333)
T 3ba1_A          203 YTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRG  253 (333)
T ss_dssp             SEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCG
T ss_pred             ceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence            234568899999999999999874 45554324556788887899998764

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=97.18  E-value=0.00074  Score=62.30  Aligned_cols=73  Identities=19%  Similarity=0.326  Sum_probs=50.2

Q ss_pred             CcE-EEEEc-CChhHHHHHHHHH-HcCCCCeEEEEeCCHH-HHHHHH-CC-CCCCCCCChHHHHHhhcCCCEEEecCHHH
Q 011654            1 MVK-ICCIG-AGYVGGPTMAVIA-LKCPKIEVAVVDISVS-RIAAWN-GD-QLPIYEPGLEDVVTQCRGRNLFFSTDIEK   74 (480)
Q Consensus         1 imk-I~VIG-lG~~G~~lA~~La-~~~~G~~V~~~D~~~~-~v~~l~-~~-~~~~~e~~l~~l~~~~~~~~l~~t~d~~~   74 (480)
                      ||| |.|.| .|.+|..++..|+ +.  |++|++++++++ +.+.+. .+ ...+.            .+.+.-..++.+
T Consensus         4 mmk~vlVtGasg~iG~~~~~~l~~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~~~------------~~D~~d~~~~~~   69 (221)
T 3r6d_A            4 MYXYITILGAAGQIAQXLTATLLTYT--DMHITLYGRQLKTRIPPEIIDHERVTVI------------EGSFQNPGXLEQ   69 (221)
T ss_dssp             SCSEEEEESTTSHHHHHHHHHHHHHC--CCEEEEEESSHHHHSCHHHHTSTTEEEE------------ECCTTCHHHHHH
T ss_pred             eEEEEEEEeCCcHHHHHHHHHHHhcC--CceEEEEecCccccchhhccCCCceEEE------------ECCCCCHHHHHH
Confidence            566 99999 5999999999999 77  999999999998 776663 11 10000            001110123345


Q ss_pred             HhccCcEEEEecc
Q 011654           75 HVAEADIVFVSVN   87 (480)
Q Consensus        75 a~~~aDvVii~Vp   87 (480)
                      +++++|+||.+.+
T Consensus        70 ~~~~~d~vv~~ag   82 (221)
T 3r6d_A           70 AVTNAEVVFVGAM   82 (221)
T ss_dssp             HHTTCSEEEESCC
T ss_pred             HHcCCCEEEEcCC
Confidence            6788999999975

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=97.17  E-value=0.0019  Score=63.54  Aligned_cols=100  Identities=15%  Similarity=0.148  Sum_probs=74.8

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          ....+++.|...|++|.+|||...... ...+                      +
T Consensus       138 ~~l~g~~vgIIG~G~----------IG~~~A~~l~~~G~~V~~~d~~~~~~~-~~~~----------------------g  184 (313)
T 2ekl_A          138 LELAGKTIGIVGFGR----------IGTKVGIIANAMGMKVLAYDILDIREK-AEKI----------------------N  184 (313)
T ss_dssp             CCCTTCEEEEESCSH----------HHHHHHHHHHHTTCEEEEECSSCCHHH-HHHT----------------------T
T ss_pred             CCCCCCEEEEEeeCH----------HHHHHHHHHHHCCCEEEEECCCcchhH-HHhc----------------------C
Confidence            467899999999854          889999999999999999999877542 2222                      1


Q ss_pred             eeeecCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCC--CCChH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRN--ILDVE  453 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~  453 (480)
                      +.+ .++++.++++|+|+++++... .+++=-....+.|++.+++||+.+  +.+.+
T Consensus       185 ~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~  240 (313)
T 2ekl_A          185 AKA-VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGK  240 (313)
T ss_dssp             CEE-CCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHH
T ss_pred             cee-cCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHH
Confidence            233 378899999999999998743 444322456678998889999866  45544

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=97.16  E-value=0.0012  Score=69.66  Aligned_cols=95  Identities=15%  Similarity=0.187  Sum_probs=73.8

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          ....+++.|.+.|.+|.+|||....+. ..+++                      
T Consensus       138 ~~l~g~~vgIIG~G~----------IG~~vA~~l~~~G~~V~~~d~~~~~~~-a~~~g----------------------  184 (529)
T 1ygy_A          138 TEIFGKTVGVVGLGR----------IGQLVAQRIAAFGAYVVAYDPYVSPAR-AAQLG----------------------  184 (529)
T ss_dssp             CCCTTCEEEEECCSH----------HHHHHHHHHHTTTCEEEEECTTSCHHH-HHHHT----------------------
T ss_pred             cccCCCEEEEEeeCH----------HHHHHHHHHHhCCCEEEEECCCCChhH-HHhcC----------------------
Confidence            357899999999865          788999999999999999999875433 22222                      


Q ss_pred             eeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCC
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRN  448 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~  448 (480)
                      +... +++++++++|+|+++++.. +.+++=-+.+...|++.++|+|+..
T Consensus       185 ~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~ar  233 (529)
T 1ygy_A          185 IELL-SLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAAR  233 (529)
T ss_dssp             CEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSC
T ss_pred             cEEc-CHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCC
Confidence            2333 7889999999999999886 6666433456778988889999865

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=97.13  E-value=0.00061  Score=65.98  Aligned_cols=122  Identities=11%  Similarity=0.149  Sum_probs=71.0

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      +||+|+| +|.||..++..+... ++.++++ +|+++...    .|.      ++.++.. ....++.+++|+++.+.++
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~-~~~eLvg~vd~~~~~~----~G~------d~gel~G-~~~~gv~v~~dl~~ll~~a   89 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRR-KDVELCAVLVRKGSSF----VDK------DASILIG-SDFLGVRITDDPESAFSNT   89 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTC-SSEEEEEEBCCTTCTT----TTS------BGGGGTT-CSCCSCBCBSCHHHHTTSC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecCCccc----ccc------chHHhhc-cCcCCceeeCCHHHHhcCC
Confidence            6899999 999999999988865 5788665 58764210    010      1111100 0113466788999988999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC-ccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV-PVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      |++|-+.+ |                 ..+.+.+...++.+.-+|+.||- .+...++|.+..+      ...++++|.+
T Consensus        90 DVvIDFT~-p-----------------~a~~~~~~~~l~~Gv~vViGTTG~~~e~~~~L~~aa~------~~~~~~a~N~  145 (288)
T 3ijp_A           90 EGILDFSQ-P-----------------QASVLYANYAAQKSLIHIIGTTGFSKTEEAQIADFAK------YTTIVKSGNM  145 (288)
T ss_dssp             SEEEECSC-H-----------------HHHHHHHHHHHHHTCEEEECCCCCCHHHHHHHHHHHT------TSEEEECSCC
T ss_pred             CEEEEcCC-H-----------------HHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHhC------cCCEEEECCC
Confidence            99998753 2                 22333344444456667766653 2212222333222      2457788875


Q ss_pred             c
Q 011654          159 L  159 (480)
Q Consensus       159 ~  159 (480)
                      .
T Consensus       146 S  146 (288)
T 3ijp_A          146 S  146 (288)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=97.13  E-value=0.0029  Score=65.39  Aligned_cols=114  Identities=12%  Similarity=0.098  Sum_probs=69.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH----HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS----RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~----~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      +||.|||+|..|.+.|..|+++  |++|+++|.++.    ..+.|.+...                 .+..-.+.++.+.
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~--G~~V~~~D~~~~~~~~~~~~L~~~gi-----------------~~~~g~~~~~~~~   70 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKL--GAIVTVNDGKPFDENPTAQSLLEEGI-----------------KVVCGSHPLELLD   70 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHT--TCEEEEEESSCGGGCHHHHHHHHTTC-----------------EEEESCCCGGGGG
T ss_pred             CEEEEEeeCHHHHHHHHHHHhC--CCEEEEEeCCcccCChHHHHHHhCCC-----------------EEEECCChHHhhc
Confidence            4899999999999999999998  999999998542    2334432111                 1222223333345


Q ss_pred             c-CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHH---------HHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654           78 E-ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR---------MIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS  145 (480)
Q Consensus        78 ~-aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~  145 (480)
                      + +|+||++..-|.+           ...+..+.+         ++...+.+..+|-+..|..-.||.. +..+|++.+
T Consensus        71 ~~~d~vv~spgi~~~-----------~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  138 (451)
T 3lk7_A           71 EDFCYMIKNPGIPYN-----------NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG  138 (451)
T ss_dssp             SCEEEEEECTTSCTT-----------SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEECCcCCCC-----------ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            5 8999988544322           122333322         1222222456777777877666655 567777654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=97.12  E-value=0.00097  Score=65.89  Aligned_cols=101  Identities=9%  Similarity=0.036  Sum_probs=74.3

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          ....+++.|...|.+|.+||+.....+.                        ...
T Consensus       133 ~~l~gktvGIiGlG~----------IG~~vA~~l~~~G~~V~~~dr~~~~~~~------------------------~~~  178 (324)
T 3evt_A          133 STLTGQQLLIYGTGQ----------IGQSLAAKASALGMHVIGVNTTGHPADH------------------------FHE  178 (324)
T ss_dssp             CCSTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEEESSCCCCTT------------------------CSE
T ss_pred             ccccCCeEEEECcCH----------HHHHHHHHHHhCCCEEEEECCCcchhHh------------------------Hhh
Confidence            467899999999854          7899999999999999999997543210                        011


Q ss_pred             eeeecCHHHhcccccEEEEEecc-cccccccHHHHHHhcCCCCEEEEcCC--CCChHH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEW-DEFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEK  454 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~  454 (480)
                      .....++++.++++|+|++++.. ++-+.+=-.+..+.|++.+++||+.+  +.+.+.
T Consensus       179 ~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~a  236 (324)
T 3evt_A          179 TVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTA  236 (324)
T ss_dssp             EEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCHHH
T ss_pred             ccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhHHH
Confidence            12245788999999999999886 34444323566778998889999875  556544

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=97.10  E-value=0.0014  Score=66.72  Aligned_cols=98  Identities=13%  Similarity=0.107  Sum_probs=74.9

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          -...+++.|...|.+|.+|||.....                          ...
T Consensus       141 ~el~gktlGiIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~--------------------------~~~  184 (404)
T 1sc6_A          141 FEARGKKLGIIGYGH----------IGTQLGILAESLGMYVYFYDIENKLP--------------------------LGN  184 (404)
T ss_dssp             CCSTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSCCCC--------------------------CTT
T ss_pred             cccCCCEEEEEeECH----------HHHHHHHHHHHCCCEEEEEcCCchhc--------------------------cCC
Confidence            457899999999854          78999999999999999999964321                          012


Q ss_pred             eeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCC--CCChH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRN--ILDVE  453 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~  453 (480)
                      .....++++.++++|+|+++++.. +-+++=-....+.|++.+++||+.+  +.+.+
T Consensus       185 ~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~vd~~  241 (404)
T 1sc6_A          185 ATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIP  241 (404)
T ss_dssp             CEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHH
T ss_pred             ceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHHhHH
Confidence            345568999999999999999885 4454322456688998889999976  45544

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=97.09  E-value=0.0032  Score=62.17  Aligned_cols=73  Identities=19%  Similarity=0.311  Sum_probs=52.5

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCC-------eEEEEeCCH--HHHH----HHHCCCCCCCCCChHHHHHhhcCCCEE
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKI-------EVAVVDISV--SRIA----AWNGDQLPIYEPGLEDVVTQCRGRNLF   67 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~-------~V~~~D~~~--~~v~----~l~~~~~~~~e~~l~~l~~~~~~~~l~   67 (480)
                      |||.|+|. |.+|.+++..|..+  |+       +|+++|+++  ++.+    .+.....++            . +.++
T Consensus         5 mkVlVtGaaGfIG~~l~~~L~~~--g~~~~~~~~ev~l~D~~~~~~~~~g~~~dl~~~~~~~------------~-~di~   69 (327)
T 1y7t_A            5 VRVAVTGAAGQIGYSLLFRIAAG--EMLGKDQPVILQLLEIPQAMKALEGVVMELEDCAFPL------------L-AGLE   69 (327)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTT--TTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT------------E-EEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC--CCCCCCCCCEEEEEeCCCchhhccchhhhhhcccccc------------c-CCeE
Confidence            79999996 99999999999987  75       899999974  2222    222211111            0 2456


Q ss_pred             EecCHHHHhccCcEEEEeccCC
Q 011654           68 FSTDIEKHVAEADIVFVSVNTP   89 (480)
Q Consensus        68 ~t~d~~~a~~~aDvVii~Vptp   89 (480)
                      .+++..++++++|+||.+...+
T Consensus        70 ~~~~~~~a~~~~D~Vih~Ag~~   91 (327)
T 1y7t_A           70 ATDDPKVAFKDADYALLVGAAP   91 (327)
T ss_dssp             EESCHHHHTTTCSEEEECCCCC
T ss_pred             eccChHHHhCCCCEEEECCCcC
Confidence            6677788899999999997654

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.08  E-value=0.0015  Score=65.47  Aligned_cols=99  Identities=22%  Similarity=0.316  Sum_probs=66.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCE-EEe---cCHHHHhc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNL-FFS---TDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l-~~t---~d~~~a~~   77 (480)
                      .+|.|+|+|.+|...+..+...  |.+|+++|+++++.+.+.+-.            .    ..+ ...   .++.+.+.
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~--Ga~V~v~dr~~~r~~~~~~~~------------~----~~~~~~~~~~~~~~~~~~  229 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLF------------G----SRVELLYSNSAEIETAVA  229 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH------------G----GGSEEEECCHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHHHHhh------------C----ceeEeeeCCHHHHHHHHc
Confidence            4799999999999999999887  889999999999988775310            0    011 111   23445567


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVP  130 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~  130 (480)
                      ++|+||-|++.|...       .+.+     ..+...+.++++.+|++.+..+
T Consensus       230 ~~DvVI~~~~~~~~~-------~~~l-----i~~~~~~~~~~g~~ivdv~~~~  270 (361)
T 1pjc_A          230 EADLLIGAVLVPGRR-------APIL-----VPASLVEQMRTGSVIVDVAVDQ  270 (361)
T ss_dssp             TCSEEEECCCCTTSS-------CCCC-----BCHHHHTTSCTTCEEEETTCTT
T ss_pred             CCCEEEECCCcCCCC-------CCee-----cCHHHHhhCCCCCEEEEEecCC
Confidence            899999998765321       1110     0122345677888888765443

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=97.07  E-value=0.0028  Score=65.49  Aligned_cols=75  Identities=17%  Similarity=0.234  Sum_probs=51.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|.|+|+|.+|..++..|++.  |++|+++|+++++.+.+.+....+.         . ....+.-..++.++++++|+
T Consensus         4 k~VlViGaG~iG~~ia~~L~~~--G~~V~v~~R~~~~a~~la~~~~~~~---------~-~~~Dv~d~~~l~~~l~~~Dv   71 (450)
T 1ff9_A            4 KSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTLESAKKLSAGVQHST---------P-ISLDVNDDAALDAEVAKHDL   71 (450)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTT--TCEEEEEESSHHHHHHTTTTCTTEE---------E-EECCTTCHHHHHHHHTTSSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--cCEEEEEECCHHHHHHHHHhcCCce---------E-EEeecCCHHHHHHHHcCCcE
Confidence            5899999999999999999987  8999999999998887764210000         0 00000000123455678999


Q ss_pred             EEEeccC
Q 011654           82 VFVSVNT   88 (480)
Q Consensus        82 Vii~Vpt   88 (480)
                      ||.|+|.
T Consensus        72 VIn~a~~   78 (450)
T 1ff9_A           72 VISLIPY   78 (450)
T ss_dssp             EEECCC-
T ss_pred             EEECCcc
Confidence            9999874

>2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A*

Probab=97.07  E-value=0.11  Score=49.47  Aligned_cols=108  Identities=19%  Similarity=0.171  Sum_probs=74.6

Q ss_pred             CCEEEecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHh
Q 011654           64 RNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTH  143 (480)
Q Consensus        64 ~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~  143 (480)
                      -++++++|-.||++++|++|+-+|  ...            .-..+++.+.++++.|.+|....|+||-.   +..+++.
T Consensus       127 aGVkVtsDD~EAvk~AEi~IlftP--fG~------------~t~~Iakkii~~lpEgAII~nTCTipp~~---ly~~le~  189 (358)
T 2b0j_A          127 VGLKVTSDDREAVEGADIVITWLP--KGN------------KQPDIIKKFADAIPEGAIVTHACTIPTTK---FAKIFKD  189 (358)
T ss_dssp             GTCEEESCHHHHHTTCSEEEECCT--TCT------------THHHHHHHHGGGSCTTCEEEECSSSCHHH---HHHHHHH
T ss_pred             cCcEeecchHHHhcCCCEEEEecC--CCC------------CcHHHHHHHHhhCcCCCEEecccCCCHHH---HHHHHHH
Confidence            467899998999999999999965  321            12567899999999999999989998754   3444554


Q ss_pred             cCCCCceeEe-eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccC
Q 011654          144 NSREIKYQIL-SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWV  199 (480)
Q Consensus       144 ~~~g~~~~v~-~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~  199 (480)
                      .. ..|+.+. ++|- .-||..-       +..+|-.  -.+++.++++.+|-++..
T Consensus       190 l~-R~DvgIsS~HPa-aVPgt~G-------q~~~g~~--yAtEEqIeklveLaksa~  235 (358)
T 2b0j_A          190 LG-REDLNITSYHPG-CVPEMKG-------QVYIAEG--YASEEAVNKLYEIGKIAR  235 (358)
T ss_dssp             TT-CTTSEEEECBCS-SCTTTCC-------CEEEEES--SSCHHHHHHHHHHHHHHH
T ss_pred             hC-cccCCeeccCCC-CCCCCCC-------ccccccc--cCCHHHHHHHHHHHHHhC
Confidence            33 2345554 5774 3354421       2345532  236889999999988875

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=97.06  E-value=0.00049  Score=67.69  Aligned_cols=70  Identities=23%  Similarity=0.294  Sum_probs=46.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeE-EEEeCCHHH-HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh---
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEV-AVVDISVSR-IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV---   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V-~~~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~---   76 (480)
                      +||+|||+|++|..++..+.++.++.++ .++|+++++ ...+.+..                 +....+++.++.+   
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~-----------------g~~~~~~~~e~ll~~~   67 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM-----------------GVTTTYAGVEGLIKLP   67 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT-----------------TCCEESSHHHHHHHSG
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHc-----------------CCCcccCCHHHHHhcc
Confidence            5899999999999999998663356664 468998776 34432210                 1112234455543   


Q ss_pred             --ccCcEEEEeccC
Q 011654           77 --AEADIVFVSVNT   88 (480)
Q Consensus        77 --~~aDvVii~Vpt   88 (480)
                        .+.|+||+|+|+
T Consensus        68 ~~~~iDvV~~atp~   81 (312)
T 1nvm_B           68 EFADIDFVFDATSA   81 (312)
T ss_dssp             GGGGEEEEEECSCH
T ss_pred             CCCCCcEEEECCCh
Confidence              458999999874

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=97.06  E-value=0.0018  Score=62.88  Aligned_cols=65  Identities=18%  Similarity=0.163  Sum_probs=48.4

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E   78 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~   78 (480)
                      +||+|+|+ |.||..++..+.+.  |++ .++++|+.+.     +..               ..++.+.++++++.+  +
T Consensus         8 ~rVaViG~sG~~G~~~~~~l~~~--g~~-~V~~V~p~~~-----g~~---------------~~G~~vy~sl~el~~~~~   64 (288)
T 2nu8_A            8 TKVICQGFTGSQGTFHSEQAIAY--GTK-MVGGVTPGKG-----GTT---------------HLGLPVFNTVREAVAATG   64 (288)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCT-----TCE---------------ETTEEEESSHHHHHHHHC
T ss_pred             CEEEEECCCChHHHHHHHHHHHC--CCe-EEEEeCCCcc-----cce---------------eCCeeccCCHHHHhhcCC
Confidence            58999998 99999999999887  788 4455555321     100               024677888888777  8


Q ss_pred             CcEEEEeccCC
Q 011654           79 ADIVFVSVNTP   89 (480)
Q Consensus        79 aDvVii~Vptp   89 (480)
                      +|++++|+|.+
T Consensus        65 ~D~viI~tP~~   75 (288)
T 2nu8_A           65 ATASVIYVPAP   75 (288)
T ss_dssp             CCEEEECCCGG
T ss_pred             CCEEEEecCHH
Confidence            99999999864

>7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A*

Probab=97.06  E-value=0.0026  Score=63.83  Aligned_cols=116  Identities=16%  Similarity=0.194  Sum_probs=68.7

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCC-C--CeEEEEeCCHH----HHH----HHHCCCCCCCCCChHHHHHhhcCCCEEEe
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCP-K--IEVAVVDISVS----RIA----AWNGDQLPIYEPGLEDVVTQCRGRNLFFS   69 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~-G--~~V~~~D~~~~----~v~----~l~~~~~~~~e~~l~~l~~~~~~~~l~~t   69 (480)
                      +||+||| +|.+|.++|..|+.+.- +  .++.++|.+.+    +++    .|+....++             ..+.+.+
T Consensus        33 ~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~~~~G~amDL~h~~~p~-------------~~~v~i~   99 (375)
T 7mdh_A           33 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPL-------------LREVSIG   99 (375)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTT-------------EEEEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhhhhHHHHHhHHhhhhhh-------------cCCcEEe
Confidence            6899999 79999999999987621 1  12777665432    222    223221111             0134566


Q ss_pred             cCHHHHhccCcEEEEeccCCCCcCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           70 TDIEKHVAEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      ++..+++++||+||++-..|..+ |  .+ +.|     .+.+++..+.|.++..++.+|++- |.|..+.-
T Consensus       100 ~~~y~~~~daDvVVitag~prkp-G--~t-R~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVv-sNPvD~~t  165 (375)
T 7mdh_A          100 IDPYEVFEDVDWALLIGAKPRGP-G--ME-RAALLDINGQIFADQGKALNAVASKNVKVLVV-GNPCNTNA  165 (375)
T ss_dssp             SCHHHHTTTCSEEEECCCCCCCT-T--CC-HHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEC-SSSHHHHH
T ss_pred             cCCHHHhCCCCEEEEcCCCCCCC-C--CC-HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe-cCchhHHH
Confidence            66667799999999987666433 1  11 222     244555556677765555655543 46766543

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=97.03  E-value=0.0025  Score=54.72  Aligned_cols=106  Identities=15%  Similarity=0.087  Sum_probs=73.9

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      +.++|+|+|+|-++      ++++..+++.|.+.|++|...||....  +                         .++..
T Consensus        13 ~p~~IavIGaS~~~------g~~G~~~~~~L~~~G~~V~~vnp~~~~--i-------------------------~G~~~   59 (138)
T 1y81_A           13 EFRKIALVGASKNP------AKYGNIILKDLLSKGFEVLPVNPNYDE--I-------------------------EGLKC   59 (138)
T ss_dssp             -CCEEEEETCCSCT------TSHHHHHHHHHHHTTCEEEEECTTCSE--E-------------------------TTEEC
T ss_pred             CCCeEEEEeecCCC------CCHHHHHHHHHHHCCCEEEEeCCCCCe--E-------------------------CCeee
Confidence            56899999998765      578999999999999999999997421  1                         13455


Q ss_pred             ecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH---HHhhcCcEEEE
Q 011654          403 VWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE---KLREIGFIVYS  464 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~~~~~g~~y~~  464 (480)
                      ..|+.+..+..|++++.+.-+.-.++ ..++.+ .+.+.++++... +.++   ..++.|++|.|
T Consensus        60 ~~s~~el~~~vDlvii~vp~~~v~~v-~~~~~~-~g~~~i~~~~~~-~~~~l~~~a~~~Gi~~ig  121 (138)
T 1y81_A           60 YRSVRELPKDVDVIVFVVPPKVGLQV-AKEAVE-AGFKKLWFQPGA-ESEEIRRFLEKAGVEYSF  121 (138)
T ss_dssp             BSSGGGSCTTCCEEEECSCHHHHHHH-HHHHHH-TTCCEEEECTTS-CCHHHHHHHHHHTCEEEC
T ss_pred             cCCHHHhCCCCCEEEEEeCHHHHHHH-HHHHHH-cCCCEEEEcCcc-HHHHHHHHHHHCCCEEEc
Confidence            66888887889999999984332222 233444 344568888755 4443   34467999865

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=97.02  E-value=0.0014  Score=68.13  Aligned_cols=76  Identities=17%  Similarity=0.254  Sum_probs=52.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +++|.|+|+|.+|.+++..|++. +|++|++++|++++.+.+.+.. .+.   .      . ...+.-.+++.++++++|
T Consensus        23 ~k~VlIiGAGgiG~aia~~L~~~-~g~~V~v~~R~~~ka~~la~~~-~~~---~------~-~~D~~d~~~l~~~l~~~D   90 (467)
T 2axq_A           23 GKNVLLLGSGFVAQPVIDTLAAN-DDINVTVACRTLANAQALAKPS-GSK---A------I-SLDVTDDSALDKVLADND   90 (467)
T ss_dssp             CEEEEEECCSTTHHHHHHHHHTS-TTEEEEEEESSHHHHHHHHGGG-TCE---E------E-ECCTTCHHHHHHHHHTSS
T ss_pred             CCEEEEECChHHHHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhc-CCc---E------E-EEecCCHHHHHHHHcCCC
Confidence            35899999999999999999976 3689999999999988876420 000   0      0 000000013445577899


Q ss_pred             EEEEeccC
Q 011654           81 IVFVSVNT   88 (480)
Q Consensus        81 vVii~Vpt   88 (480)
                      +||.|+|.
T Consensus        91 vVIn~tp~   98 (467)
T 2axq_A           91 VVISLIPY   98 (467)
T ss_dssp             EEEECSCG
T ss_pred             EEEECCch
Confidence            99999874

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=97.02  E-value=0.00096  Score=65.16  Aligned_cols=109  Identities=10%  Similarity=0.035  Sum_probs=75.7

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee-
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV-  402 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  402 (480)
                      ..+|+|+|+..          ....++..|.+.|.+|.+||+.....+...+.                      +... 
T Consensus         7 ~~~I~iIG~G~----------mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~----------------------g~~~~   54 (303)
T 3g0o_A            7 DFHVGIVGLGS----------MGMGAARSCLRAGLSTWGADLNPQACANLLAE----------------------GACGA   54 (303)
T ss_dssp             CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----------------------TCSEE
T ss_pred             CCeEEEECCCH----------HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHc----------------------CCccc
Confidence            46899999876          88999999999999999999865432222211                      2233 


Q ss_pred             ecCHHHhcccccEEEEEecccc-cccccH--HHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEE
Q 011654          403 VWDAYQAAKDAHGVCILTEWDE-FKTLDY--QKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYS  464 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~-~~~~~~--~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~  464 (480)
                      .+++.++++++|+|++++..+. .+..-+  +.+...+++..+|+|+.+.....      .+.+.|..|..
T Consensus        55 ~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~~~  125 (303)
T 3g0o_A           55 AASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLD  125 (303)
T ss_dssp             ESSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             cCCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCeEEe
Confidence            6788999999999999998753 322100  23445666677999998876422      22345777765

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=97.02  E-value=0.0018  Score=65.92  Aligned_cols=98  Identities=17%  Similarity=0.168  Sum_probs=72.0

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.-          -...+++.|...|.+|.+|||.....                          ....
T Consensus       153 el~gktvGIIGlG~----------IG~~vA~~l~~~G~~V~~yd~~~~~~--------------------------~~~~  196 (416)
T 3k5p_A          153 EVRGKTLGIVGYGN----------IGSQVGNLAESLGMTVRYYDTSDKLQ--------------------------YGNV  196 (416)
T ss_dssp             CSTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECTTCCCC--------------------------BTTB
T ss_pred             cCCCCEEEEEeeCH----------HHHHHHHHHHHCCCEEEEECCcchhc--------------------------ccCc
Confidence            46899999999854          78999999999999999999963210                          0123


Q ss_pred             eeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCC--CCChHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEK  454 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~  454 (480)
                      ....++++.++.+|+|+++++.. +-+.+=-....+.|++.+++||+.+  +.|.+.
T Consensus       197 ~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~a  253 (416)
T 3k5p_A          197 KPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDVDLEA  253 (416)
T ss_dssp             EECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTSBCHHH
T ss_pred             EecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHH
Confidence            44578999999999999998873 3444322456678998889999865  555543

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=97.02  E-value=0.00047  Score=64.55  Aligned_cols=68  Identities=13%  Similarity=0.090  Sum_probs=49.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecC---HHHH-hc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTD---IEKH-VA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d---~~~a-~~   77 (480)
                      ++|.|+|+|.+|..+|..|.+.  |+ |+++|+++++++.+..+...+.             +.   .++   ++++ +.
T Consensus        10 ~~viI~G~G~~G~~la~~L~~~--g~-v~vid~~~~~~~~~~~~~~~i~-------------gd---~~~~~~l~~a~i~   70 (234)
T 2aef_A           10 RHVVICGWSESTLECLRELRGS--EV-FVLAEDENVRKKVLRSGANFVH-------------GD---PTRVSDLEKANVR   70 (234)
T ss_dssp             CEEEEESCCHHHHHHHHHSTTS--EE-EEEESCGGGHHHHHHTTCEEEE-------------SC---TTCHHHHHHTTCT
T ss_pred             CEEEEECCChHHHHHHHHHHhC--Ce-EEEEECCHHHHHHHhcCCeEEE-------------cC---CCCHHHHHhcCcc
Confidence            5799999999999999999887  89 9999999999887763211110             00   112   2222 67


Q ss_pred             cCcEEEEeccC
Q 011654           78 EADIVFVSVNT   88 (480)
Q Consensus        78 ~aDvVii~Vpt   88 (480)
                      ++|.||++++.
T Consensus        71 ~ad~vi~~~~~   81 (234)
T 2aef_A           71 GARAVIVDLES   81 (234)
T ss_dssp             TCSEEEECCSC
T ss_pred             hhcEEEEcCCC
Confidence            89999999764

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=97.01  E-value=0.0013  Score=64.12  Aligned_cols=65  Identities=11%  Similarity=0.234  Sum_probs=44.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHc--CCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-
Q 011654            2 VKICCIGAGYVGGPTMAVIALK--CPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~--~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-   77 (480)
                      +||+|||+|.||...+..|...  .++.+++ ++|+++     ..+                  ..++. .+|+++.++ 
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~-----~a~------------------~~g~~-~~~~~ell~~   63 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE-----LGS------------------LDEVR-QISLEDALRS   63 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC-----CCE------------------ETTEE-BCCHHHHHHC
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchH-----HHH------------------HcCCC-CCCHHHHhcC
Confidence            6899999999999999888641  1366765 567642     000                  01233 368888775 


Q ss_pred             -cCcEEEEeccCCC
Q 011654           78 -EADIVFVSVNTPT   90 (480)
Q Consensus        78 -~aDvVii~Vptp~   90 (480)
                       +.|+|++|+|+..
T Consensus        64 ~~vD~V~i~tp~~~   77 (294)
T 1lc0_A           64 QEIDVAYICSESSS   77 (294)
T ss_dssp             SSEEEEEECSCGGG
T ss_pred             CCCCEEEEeCCcHh
Confidence             6899999988643

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=96.99  E-value=0.0018  Score=63.60  Aligned_cols=108  Identities=14%  Similarity=0.065  Sum_probs=79.4

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-EEEEECCCC--ChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA-KLSIYDPQV--TEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      ..+|+|+|+..          ....++..|.+.|. +|.+||+..  ...+...+                      .++
T Consensus        24 ~~~I~iIG~G~----------mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~----------------------~g~   71 (312)
T 3qsg_A           24 AMKLGFIGFGE----------AASAIASGLRQAGAIDMAAYDAASAESWRPRAEE----------------------LGV   71 (312)
T ss_dssp             -CEEEEECCSH----------HHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHH----------------------TTC
T ss_pred             CCEEEEECccH----------HHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHH----------------------CCC
Confidence            46899999976          88999999999999 999999963  22221111                      235


Q ss_pred             eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhc--CcEEEE
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREI--GFIVYS  464 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~--g~~y~~  464 (480)
                      ...+++.++++++|+|++++.-+...+ -.+.+...+++..+|||+..+....      .+.+.  |..|..
T Consensus        72 ~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd  142 (312)
T 3qsg_A           72 SCKASVAEVAGECDVIFSLVTAQAALE-VAQQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAA  142 (312)
T ss_dssp             EECSCHHHHHHHCSEEEECSCTTTHHH-HHHHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             EEeCCHHHHHhcCCEEEEecCchhHHH-HHHhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEe
Confidence            667899999999999999998877554 2466777777777999999877532      23344  777754

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=96.97  E-value=0.0022  Score=66.70  Aligned_cols=118  Identities=13%  Similarity=0.121  Sum_probs=84.2

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      ..+|+|+|+..          ....++..|.++|.+|.+||......+...+.+.                 ....+...
T Consensus         4 ~~kIgiIGlG~----------MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~-----------------~g~~i~~~   56 (484)
T 4gwg_A            4 QADIALIGLAV----------MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEA-----------------KGTKVVGA   56 (484)
T ss_dssp             CBSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTT-----------------TTSSCEEC
T ss_pred             CCEEEEEChhH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhccc-----------------CCCceecc
Confidence            45899999976          8999999999999999999997654332221100                 00134446


Q ss_pred             cCHHHhcc---cccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecCCC
Q 011654          404 WDAYQAAK---DAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIGKPL  469 (480)
Q Consensus       404 ~~~~~a~~---~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~~~  469 (480)
                      .+++++++   ++|+|+++++.+ ..++ -.+.+...+++..+|||+.+.....      .+.+.|+.|.+.+...
T Consensus        57 ~s~~e~v~~l~~aDvVil~Vp~~~~v~~-vl~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsG  131 (484)
T 4gwg_A           57 QSLKEMVSKLKKPRRIILLVKAGQAVDD-FIEKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSG  131 (484)
T ss_dssp             SSHHHHHHTBCSSCEEEECSCSSHHHHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             CCHHHHHhhccCCCEEEEecCChHHHHH-HHHHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccC
Confidence            78888776   599999999986 3443 2367777887778999999988532      3445699998876433

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=96.95  E-value=0.00089  Score=64.79  Aligned_cols=109  Identities=6%  Similarity=0.015  Sum_probs=77.1

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      ++|+|+|+..          ....++..|.+.|.+|.+||+.....+...+                      .++...+
T Consensus         2 ~~I~iiG~G~----------mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~~~~   49 (287)
T 3pdu_A            2 TTYGFLGLGI----------MGGPMAANLVRAGFDVTVWNRNPAKCAPLVA----------------------LGARQAS   49 (287)
T ss_dssp             CCEEEECCST----------THHHHHHHHHHHTCCEEEECSSGGGGHHHHH----------------------HTCEECS
T ss_pred             CeEEEEccCH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHH----------------------CCCeecC
Confidence            4799999865          8899999999999999999987654332222                      1356678


Q ss_pred             CHHHhcccccEEEEEeccc-ccccccH--HHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011654          405 DAYQAAKDAHGVCILTEWD-EFKTLDY--QKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSI  465 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~-~~~~~~~--~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i  465 (480)
                      ++.++++++|+|++++..+ ..++.-.  +.+...+++..+|+|+.......      .+.+.|+.|..-
T Consensus        50 ~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~~~~~  119 (287)
T 3pdu_A           50 SPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEA  119 (287)
T ss_dssp             CHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEC
T ss_pred             CHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEEC
Confidence            9999999999999999876 3333110  33445566677999998865432      223457777543

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=96.95  E-value=0.001  Score=65.73  Aligned_cols=101  Identities=14%  Similarity=0.054  Sum_probs=73.2

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.          .-...+++.|...|.+|.+||+.......                        ...
T Consensus       136 ~~l~g~tvGIIGlG----------~IG~~vA~~l~~~G~~V~~~dr~~~~~~~------------------------~~~  181 (324)
T 3hg7_A          136 QGLKGRTLLILGTG----------SIGQHIAHTGKHFGMKVLGVSRSGRERAG------------------------FDQ  181 (324)
T ss_dssp             CCSTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCCCTT------------------------CSE
T ss_pred             cccccceEEEEEEC----------HHHHHHHHHHHhCCCEEEEEcCChHHhhh------------------------hhc
Confidence            35789999999984          48899999999999999999997532110                        011


Q ss_pred             eeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCC--CCChHH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEK  454 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~  454 (480)
                      .....++++.++++|+|+++++.. +-+.+=-.+..+.|++.+++||+.+  ++|.+.
T Consensus       182 ~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~a  239 (324)
T 3hg7_A          182 VYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAINEGD  239 (324)
T ss_dssp             EECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBCHHH
T ss_pred             ccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhCHHH
Confidence            222468899999999999998863 3333222345678898889999965  556543

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=96.94  E-value=0.0021  Score=64.73  Aligned_cols=99  Identities=12%  Similarity=0.138  Sum_probs=73.1

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +..+.+++|+|+|+.-          -...+++.|...|.+|.+|||.....    .                      .
T Consensus       114 g~~l~gktvGIIGlG~----------IG~~vA~~l~a~G~~V~~~d~~~~~~----~----------------------~  157 (381)
T 3oet_A          114 GFSLRDRTIGIVGVGN----------VGSRLQTRLEALGIRTLLCDPPRAAR----G----------------------D  157 (381)
T ss_dssp             TCCGGGCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECHHHHHT----T----------------------C
T ss_pred             CCccCCCEEEEEeECH----------HHHHHHHHHHHCCCEEEEECCChHHh----c----------------------c
Confidence            4577899999999854          78999999999999999999942111    0                      0


Q ss_pred             ceeeecCHHHhcccccEEEEEeccc-c----ccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWD-E----FKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~-~----~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      . ....+++++++++|+|+++++.. +    -+. ++ ....+.|++.+++||+.+  ++|.+.+
T Consensus       158 ~-~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~-~~~l~~mk~gailIN~aRG~vvde~aL  220 (381)
T 3oet_A          158 E-GDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLAD-ETLIRRLKPGAILINACRGPVVDNAAL  220 (381)
T ss_dssp             C-SCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBC-HHHHHHSCTTEEEEECSCGGGBCHHHH
T ss_pred             C-cccCCHHHHHhhCCEEEEcCcCCccccccchhhcC-HHHHhcCCCCcEEEECCCCcccCHHHH
Confidence            1 12358999999999999999764 2    223 44 456678998889999865  5665543

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.94  E-value=0.00035  Score=64.61  Aligned_cols=74  Identities=23%  Similarity=0.264  Sum_probs=49.7

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      ||||.|.| .|.+|..++..|+++  |++|+++++++++.+.+..+ ..+.            .+.+.-..++.++++++
T Consensus         4 m~~ilItGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~~~-~~~~------------~~Dl~d~~~~~~~~~~~   68 (227)
T 3dhn_A            4 VKKIVLIGASGFVGSALLNEALNR--GFEVTAVVRHPEKIKIENEH-LKVK------------KADVSSLDEVCEVCKGA   68 (227)
T ss_dssp             CCEEEEETCCHHHHHHHHHHHHTT--TCEEEEECSCGGGCCCCCTT-EEEE------------CCCTTCHHHHHHHHTTC
T ss_pred             CCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEEcCcccchhccCc-eEEE------------EecCCCHHHHHHHhcCC
Confidence            57999999 599999999999998  99999999997754322111 0000            01111112344567889


Q ss_pred             cEEEEeccCC
Q 011654           80 DIVFVSVNTP   89 (480)
Q Consensus        80 DvVii~Vptp   89 (480)
                      |+||-|....
T Consensus        69 d~vi~~a~~~   78 (227)
T 3dhn_A           69 DAVISAFNPG   78 (227)
T ss_dssp             SEEEECCCC-
T ss_pred             CEEEEeCcCC
Confidence            9999997643

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=96.92  E-value=0.0024  Score=66.59  Aligned_cols=118  Identities=14%  Similarity=0.220  Sum_probs=81.9

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+..++|+|+|+.-          ....++..|.++|.+|.+||......+......        +          ..++
T Consensus        12 ~~~~~~IgvIGlG~----------MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~--------~----------~~gi   63 (480)
T 2zyd_A           12 HMSKQQIGVVGMAV----------MGRNLALNIESRGYTVSIFNRSREKTEEVIAEN--------P----------GKKL   63 (480)
T ss_dssp             ---CBSEEEECCSH----------HHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHS--------T----------TSCE
T ss_pred             ccCCCeEEEEccHH----------HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhC--------C----------CCCe
Confidence            35678999999864          899999999999999999998644322111100        0          0246


Q ss_pred             eeecCHHHhccc---ccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEecC
Q 011654          401 NVVWDAYQAAKD---AHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIGK  467 (480)
Q Consensus       401 ~~~~~~~~a~~~---ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG~  467 (480)
                      ....++++++++   +|+|+++++.+ ..++. .+.+...+++..+|||+.+.....      .+.+.|+.|.+.+.
T Consensus        64 ~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~v-l~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv  139 (480)
T 2zyd_A           64 VPYYTVKEFVESLETPRRILLMVKAGAGTDAA-IDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGV  139 (480)
T ss_dssp             EECSSHHHHHHTBCSSCEEEECSCSSSHHHHH-HHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEeCCHHHHHhCCCCCCEEEEECCCHHHHHHH-HHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCcc
Confidence            677889998887   99999999985 45542 356667777667999999988542      23345888866543

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=96.92  E-value=0.00083  Score=66.62  Aligned_cols=73  Identities=10%  Similarity=0.091  Sum_probs=47.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCH-HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISV-SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~-~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-   77 (480)
                      |+||+|||+|.+|...+..| .  ++.+|+ ++|+++ ++.+.+.+.            ..+. .-.....+|+++.++ 
T Consensus         2 ~~rvgiiG~G~~~~~~~~~l-~--~~~~lvav~d~~~~~~~~~~~~~------------~~~~-~~~~~~~~~~~~ll~~   65 (337)
T 3ip3_A            2 SLKICVIGSSGHFRYALEGL-D--EECSITGIAPGVPEEDLSKLEKA------------ISEM-NIKPKKYNNWWEMLEK   65 (337)
T ss_dssp             CEEEEEECSSSCHHHHHTTC-C--TTEEEEEEECSSTTCCCHHHHHH------------HHTT-TCCCEECSSHHHHHHH
T ss_pred             ceEEEEEccchhHHHHHHhc-C--CCcEEEEEecCCchhhHHHHHHH------------HHHc-CCCCcccCCHHHHhcC
Confidence            46999999999988777666 3  478877 588886 333332210            0000 001356788888775 


Q ss_pred             -cCcEEEEeccCC
Q 011654           78 -EADIVFVSVNTP   89 (480)
Q Consensus        78 -~aDvVii~Vptp   89 (480)
                       +.|+|+||+|+.
T Consensus        66 ~~vD~V~I~tp~~   78 (337)
T 3ip3_A           66 EKPDILVINTVFS   78 (337)
T ss_dssp             HCCSEEEECSSHH
T ss_pred             CCCCEEEEeCCcc
Confidence             589999998754

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=96.91  E-value=0.0009  Score=62.56  Aligned_cols=74  Identities=15%  Similarity=0.236  Sum_probs=48.5

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      ||+|.|.| .|.+|..++..|++.  | ++|++++|++++.+.+......+.            .+.++-..++++++++
T Consensus        23 mk~vlVtGatG~iG~~l~~~L~~~--G~~~V~~~~R~~~~~~~~~~~~~~~~------------~~Dl~d~~~~~~~~~~   88 (236)
T 3qvo_A           23 MKNVLILGAGGQIARHVINQLADK--QTIKQTLFARQPAKIHKPYPTNSQII------------MGDVLNHAALKQAMQG   88 (236)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHTTC--TTEEEEEEESSGGGSCSSCCTTEEEE------------ECCTTCHHHHHHHHTT
T ss_pred             ccEEEEEeCCcHHHHHHHHHHHhC--CCceEEEEEcChhhhcccccCCcEEE------------EecCCCHHHHHHHhcC
Confidence            45789999 699999999999998  8 899999999875433221100000            0111111224456788


Q ss_pred             CcEEEEeccC
Q 011654           79 ADIVFVSVNT   88 (480)
Q Consensus        79 aDvVii~Vpt   88 (480)
                      +|+||.+.+.
T Consensus        89 ~D~vv~~a~~   98 (236)
T 3qvo_A           89 QDIVYANLTG   98 (236)
T ss_dssp             CSEEEEECCS
T ss_pred             CCEEEEcCCC
Confidence            9999988753

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=96.91  E-value=0.001  Score=69.10  Aligned_cols=41  Identities=27%  Similarity=0.438  Sum_probs=38.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |||-|+|+|.+|..+|..|...  ||+|+++|.|+++++.+.+
T Consensus         4 M~iiI~G~G~vG~~la~~L~~~--~~~v~vId~d~~~~~~~~~   44 (461)
T 4g65_A            4 MKIIILGAGQVGGTLAENLVGE--NNDITIVDKDGDRLRELQD   44 (461)
T ss_dssp             EEEEEECCSHHHHHHHHHTCST--TEEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHH
Confidence            8999999999999999999987  9999999999999998874

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=96.90  E-value=0.0012  Score=65.50  Aligned_cols=34  Identities=21%  Similarity=0.580  Sum_probs=28.9

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      ||||+|+| .|++|..+...|..+ |.+++..+..+
T Consensus         4 M~kv~IvGatG~vG~~l~~~L~~~-p~~el~~l~s~   38 (337)
T 3dr3_A            4 MLNTLIVGASGYAGAELVTYVNRH-PHMNITALTVS   38 (337)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHC-TTEEEEEEEEE
T ss_pred             ceEEEEECCCChHHHHHHHHHHhC-CCCcEEEEEec
Confidence            68999999 599999999999885 67888877543

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=96.90  E-value=0.0033  Score=61.45  Aligned_cols=94  Identities=17%  Similarity=0.162  Sum_probs=71.9

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.          .....+++.|...|.+|.+|||... +.                           ..
T Consensus       121 ~l~g~~vgIIG~G----------~IG~~~A~~l~~~G~~V~~~dr~~~-~~---------------------------~~  162 (303)
T 1qp8_A          121 LIQGEKVAVLGLG----------EIGTRVGKILAALGAQVRGFSRTPK-EG---------------------------PW  162 (303)
T ss_dssp             CCTTCEEEEESCS----------THHHHHHHHHHHTTCEEEEECSSCC-CS---------------------------SS
T ss_pred             CCCCCEEEEEccC----------HHHHHHHHHHHHCCCEEEEECCCcc-cc---------------------------Cc
Confidence            5789999999984          4889999999999999999999754 11                           01


Q ss_pred             eeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCC--CCCh
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRN--ILDV  452 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~  452 (480)
                      ....++++.++.+|+|+++++.. +.+++=-..+.+.|++.+++||+.+  +.+.
T Consensus       163 ~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~  217 (303)
T 1qp8_A          163 RFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDR  217 (303)
T ss_dssp             CCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCH
T ss_pred             ccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCH
Confidence            12357889999999999999885 4454322466788998889999976  3454

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=96.87  E-value=0.0033  Score=62.29  Aligned_cols=101  Identities=14%  Similarity=0.189  Sum_probs=76.0

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          -...+++.|..-|.+|.+|||+..+.....                        .
T Consensus       137 ~~l~g~tvGIiG~G~----------IG~~va~~~~~fg~~v~~~d~~~~~~~~~~------------------------~  182 (334)
T 3kb6_A          137 RELNRLTLGVIGTGR----------IGSRVAMYGLAFGMKVLCYDVVKREDLKEK------------------------G  182 (334)
T ss_dssp             CCGGGSEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSCCHHHHHT------------------------T
T ss_pred             ceecCcEEEEECcch----------HHHHHHHhhcccCceeeecCCccchhhhhc------------------------C
Confidence            356789999999854          678999999999999999999876532211                        1


Q ss_pred             eeeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHHh
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKLR  456 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~  456 (480)
                      .. ..++++.++.+|+|+++++. ++-+. ++-+. .+.|++.+++|.+.+  ++|.+.+-
T Consensus       183 ~~-~~~l~ell~~sDivslh~Plt~~T~~li~~~~-l~~mk~~a~lIN~aRG~iVde~aL~  241 (334)
T 3kb6_A          183 CV-YTSLDELLKESDVISLHVPYTKETHHMINEER-ISLMKDGVYLINTARGKVVDTDALY  241 (334)
T ss_dssp             CE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCHHH-HHHSCTTEEEEECSCGGGBCHHHHH
T ss_pred             ce-ecCHHHHHhhCCEEEEcCCCChhhccCcCHHH-HhhcCCCeEEEecCccccccHHHHH
Confidence            22 35889999999999999887 44444 55544 578998889999865  77765443

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=96.87  E-value=0.0028  Score=65.59  Aligned_cols=88  Identities=20%  Similarity=0.126  Sum_probs=64.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +++.|+|+|.+|..+|..|+..  |.+|+++|+++.+.+.....                   ... ..+.++++..+|+
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~--GA~Viv~D~~~~~a~~Aa~~-------------------g~d-v~~lee~~~~aDv  323 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQA--GARVIVTEIDPICALQATME-------------------GLQ-VLTLEDVVSEADI  323 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCE-ECCGGGTTTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh-------------------CCc-cCCHHHHHHhcCE
Confidence            4789999999999999999998  89999999999876554431                   122 2456777889999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      ++.+.++..-         .+        ....+.++++.+|++.+-
T Consensus       324 Vi~atG~~~v---------l~--------~e~l~~mk~gaiVvNaG~  353 (488)
T 3ond_A          324 FVTTTGNKDI---------IM--------LDHMKKMKNNAIVCNIGH  353 (488)
T ss_dssp             EEECSSCSCS---------BC--------HHHHTTSCTTEEEEESSS
T ss_pred             EEeCCCChhh---------hh--------HHHHHhcCCCeEEEEcCC
Confidence            9988664311         11        123456788888887653

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=96.87  E-value=0.0011  Score=61.09  Aligned_cols=104  Identities=12%  Similarity=0.189  Sum_probs=61.3

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-ecCHHHHhccC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-STDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t~d~~~a~~~a   79 (480)
                      |||.|.| .|.+|..++..|+++  |++|++++|++++.+.+ .+ ..+.            .+.+.- ..++.++++++
T Consensus         1 M~ilItGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~-~~-~~~~------------~~D~~d~~~~~~~~~~~~   64 (219)
T 3dqp_A            1 MKIFIVGSTGRVGKSLLKSLSTT--DYQIYAGARKVEQVPQY-NN-VKAV------------HFDVDWTPEEMAKQLHGM   64 (219)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTS--SCEEEEEESSGGGSCCC-TT-EEEE------------ECCTTSCHHHHHTTTTTC
T ss_pred             CeEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCccchhhc-CC-ceEE------------EecccCCHHHHHHHHcCC
Confidence            7999999 799999999999998  99999999998654322 00 0000            011100 11234456789


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      |+||-|.......     ....++.....+++...+. ..+.+|..+|
T Consensus        65 d~vi~~ag~~~~~-----~~~~n~~~~~~l~~a~~~~-~~~~iv~~SS  106 (219)
T 3dqp_A           65 DAIINVSGSGGKS-----LLKVDLYGAVKLMQAAEKA-EVKRFILLST  106 (219)
T ss_dssp             SEEEECCCCTTSS-----CCCCCCHHHHHHHHHHHHT-TCCEEEEECC
T ss_pred             CEEEECCcCCCCC-----cEeEeHHHHHHHHHHHHHh-CCCEEEEECc
Confidence            9999998654311     1133444444555444332 2234554443

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=96.86  E-value=0.0038  Score=61.38  Aligned_cols=108  Identities=19%  Similarity=0.118  Sum_probs=76.9

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEECCCCC----hHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDK-AKLSIYDPQVT----EDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      .+|+|+|+.+          ....++..|.+.| .+|.+||+...    .++....+.                   ..+
T Consensus        25 m~IgvIG~G~----------mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~-------------------~~g   75 (317)
T 4ezb_A           25 TTIAFIGFGE----------AAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAA-------------------ELG   75 (317)
T ss_dssp             CEEEEECCSH----------HHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHH-------------------HTT
T ss_pred             CeEEEECccH----------HHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHH-------------------HCC
Confidence            5899999976          8899999999999 99999998642    111111111                   012


Q ss_pred             eeeec-CHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEE
Q 011654          400 VNVVW-DAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYS  464 (480)
Q Consensus       400 ~~~~~-~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~  464 (480)
                      +  .+ ++.++++++|+|++++.-+...+ ..+.+...+++..+|||..++....      .+++.|..|..
T Consensus        76 ~--~~~s~~e~~~~aDvVi~avp~~~~~~-~~~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d  144 (317)
T 4ezb_A           76 V--EPLDDVAGIACADVVLSLVVGAATKA-VAASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVE  144 (317)
T ss_dssp             C--EEESSGGGGGGCSEEEECCCGGGHHH-HHHHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEE
T ss_pred             C--CCCCHHHHHhcCCEEEEecCCHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEe
Confidence            2  45 78899999999999998877554 2366777777777999998766432      23345777754

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=96.85  E-value=0.0082  Score=61.19  Aligned_cols=116  Identities=15%  Similarity=0.126  Sum_probs=80.5

Q ss_pred             HHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCC
Q 011654          315 VSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSP  394 (480)
Q Consensus       315 ~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (480)
                      .+..+..+.+++|+|+|+.-          -...+++.|...|++|.+|||..........                   
T Consensus       202 ~ratg~~L~GktVgIiG~G~----------IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~-------------------  252 (436)
T 3h9u_A          202 KRATDVMIAGKTACVCGYGD----------VGKGCAAALRGFGARVVVTEVDPINALQAAM-------------------  252 (436)
T ss_dssp             HHHHCCCCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-------------------
T ss_pred             HHhcCCcccCCEEEEEeeCH----------HHHHHHHHHHHCCCEEEEECCChhhhHHHHH-------------------
Confidence            33445678899999999643          6889999999999999999996432211111                   


Q ss_pred             CCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC---CChHHHhhcCcEEEEec
Q 011654          395 PASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI---LDVEKLREIGFIVYSIG  466 (480)
Q Consensus       395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~~iG  466 (480)
                         .+..+ .+++++++++|+|++.+....+  ++. +..+.|++.++|++.-+-   +|.+.+........++-
T Consensus       253 ---~G~~~-~sL~eal~~ADVVilt~gt~~i--I~~-e~l~~MK~gAIVINvgRg~vEID~~~L~~~~~~~~~ir  320 (436)
T 3h9u_A          253 ---EGYQV-LLVEDVVEEAHIFVTTTGNDDI--ITS-EHFPRMRDDAIVCNIGHFDTEIQVAWLKANAKERVEVK  320 (436)
T ss_dssp             ---TTCEE-CCHHHHTTTCSEEEECSSCSCS--BCT-TTGGGCCTTEEEEECSSSGGGBCHHHHHHHCSEEEEEE
T ss_pred             ---hCCee-cCHHHHHhhCCEEEECCCCcCc--cCH-HHHhhcCCCcEEEEeCCCCCccCHHHHHhhcCceEeec
Confidence               12222 4899999999999986654432  332 345778888899998652   46666766666666664

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.84  E-value=0.00042  Score=64.31  Aligned_cols=69  Identities=22%  Similarity=0.365  Sum_probs=44.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|+|||+|.+|..++..+....+|++++ ++|.|+++......+                  -.+...+++++.+++.|
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~g------------------v~V~~~~dl~eli~~~D  147 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGG------------------VPVYNLDDLEQHVKDES  147 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETT------------------EEEEEGGGHHHHCSSCC
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcC------------------CeeechhhHHHHHHhCC
Confidence            57999999999999999422111377766 579998765432221                  01334567777676569


Q ss_pred             EEEEeccC
Q 011654           81 IVFVSVNT   88 (480)
Q Consensus        81 vVii~Vpt   88 (480)
                      ++++|+|+
T Consensus       148 ~ViIAvPs  155 (215)
T 2vt3_A          148 VAILTVPA  155 (215)
T ss_dssp             EEEECSCH
T ss_pred             EEEEecCc
Confidence            99999884

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=96.83  E-value=0.0039  Score=61.82  Aligned_cols=100  Identities=13%  Similarity=0.078  Sum_probs=74.6

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          ....+++.|...|++|.+|||..... . .++                       
T Consensus       142 ~~l~g~~vgIiG~G~----------IG~~~A~~l~~~G~~V~~~d~~~~~~-~-~~~-----------------------  186 (333)
T 1j4a_A          142 REVRDQVVGVVGTGH----------IGQVFMQIMEGFGAKVITYDIFRNPE-L-EKK-----------------------  186 (333)
T ss_dssp             CCGGGSEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSCCHH-H-HHT-----------------------
T ss_pred             ccCCCCEEEEEccCH----------HHHHHHHHHHHCCCEEEEECCCcchh-H-Hhh-----------------------
Confidence            356789999999854          78899999999999999999987654 2 111                       


Q ss_pred             eeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCC--CCChHH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEK  454 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~  454 (480)
                      +.+.+++++.++++|+|++++... +.+++=-....+.|++.+++||+.+  +.+.+.
T Consensus       187 ~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~a  244 (333)
T 1j4a_A          187 GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDA  244 (333)
T ss_dssp             TCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHH
T ss_pred             CeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCcccCHHH
Confidence            123457889999999999999874 3554322456678988889999865  455443

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=96.81  E-value=0.005  Score=59.53  Aligned_cols=75  Identities=21%  Similarity=0.233  Sum_probs=55.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEec--CHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFST--DIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~--d~~~a~~~   78 (480)
                      .++.|+|+|-+|.+++..|++.  |. +|++++|++++.+.+.+.           +-.......+...+  ++.+.+.+
T Consensus       128 k~vlVlGaGG~g~aia~~L~~~--G~~~v~i~~R~~~~a~~la~~-----------~~~~~~~~~i~~~~~~~l~~~l~~  194 (283)
T 3jyo_A          128 DSVVQVGAGGVGNAVAYALVTH--GVQKLQVADLDTSRAQALADV-----------INNAVGREAVVGVDARGIEDVIAA  194 (283)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCSEEEEECSSHHHHHHHHHH-----------HHHHHTSCCEEEECSTTHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEECCHHHHHHHHHH-----------HHhhcCCceEEEcCHHHHHHHHhc
Confidence            4789999999999999999998  87 799999999988877542           10000011244444  67777889


Q ss_pred             CcEEEEeccCC
Q 011654           79 ADIVFVSVNTP   89 (480)
Q Consensus        79 aDvVii~Vptp   89 (480)
                      +|+||-|+|..
T Consensus       195 ~DiVInaTp~G  205 (283)
T 3jyo_A          195 ADGVVNATPMG  205 (283)
T ss_dssp             SSEEEECSSTT
T ss_pred             CCEEEECCCCC
Confidence            99999998754

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=96.80  E-value=0.0042  Score=60.72  Aligned_cols=111  Identities=8%  Similarity=-0.001  Sum_probs=77.6

Q ss_pred             CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCcee
Q 011654          322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVN  401 (480)
Q Consensus       322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (480)
                      ....+|+|+|+..          ....+++.|.+.|.+|.+||+.....+...+                      .++.
T Consensus         7 ~~~~~IgiIG~G~----------mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~----------------------~g~~   54 (306)
T 3l6d_A            7 SFEFDVSVIGLGA----------MGTIMAQVLLKQGKRVAIWNRSPGKAAALVA----------------------AGAH   54 (306)
T ss_dssp             CCSCSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSHHHHHHHHH----------------------HTCE
T ss_pred             cCCCeEEEECCCH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----------------------CCCe
Confidence            3457899999866          8899999999999999999986543222221                      1345


Q ss_pred             eecCHHHhcccccEEEEEecccc-cccc-cHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011654          402 VVWDAYQAAKDAHGVCILTEWDE-FKTL-DYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSI  465 (480)
Q Consensus       402 ~~~~~~~a~~~ad~vvi~t~h~~-~~~~-~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i  465 (480)
                      ..+++.++++++|+|++++..+. .+++ ..+.+.. +.+..+|||+...-...      .+++.|..|..-
T Consensus        55 ~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~~l~~-~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vda  125 (306)
T 3l6d_A           55 LCESVKAALSASPATIFVLLDNHATHEVLGMPGVAR-ALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKG  125 (306)
T ss_dssp             ECSSHHHHHHHSSEEEECCSSHHHHHHHHTSTTHHH-HTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEE
T ss_pred             ecCCHHHHHhcCCEEEEEeCCHHHHHHHhcccchhh-ccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEec
Confidence            67899999999999999998764 4331 1013333 34566999998876532      234568888653

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=96.79  E-value=0.0023  Score=60.48  Aligned_cols=99  Identities=16%  Similarity=0.023  Sum_probs=66.3

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChH-------HH----HHhhhccccCCCCCCCC
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTED-------QI----QRDLSMKKFDWDHPIHL  389 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-------~~----~~~~~~~~~~~~~~~~~  389 (480)
                      .+..++|+|+|+..          ....++..|.+.|.+|.+||......       +.    ...+..           
T Consensus        16 ~~~~~kIgiIG~G~----------mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-----------   74 (245)
T 3dtt_A           16 YFQGMKIAVLGTGT----------VGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLP-----------   74 (245)
T ss_dssp             ---CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGG-----------
T ss_pred             ccCCCeEEEECCCH----------HHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHh-----------
Confidence            56789999999865          88999999999999999999864320       00    011100           


Q ss_pred             CCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHH-HHhcCCCCEEEEcCCC
Q 011654          390 QPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKI-FDNMRKPAYIFDGRNI  449 (480)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~-~~~~~~~~~i~D~~~~  449 (480)
                            ... .....++.++++++|+|++++..+...+. ...+ ...+ +..+|||+.|-
T Consensus        75 ------~~~-~~~~~~~~e~~~~aDvVilavp~~~~~~~-~~~i~~~~l-~g~ivi~~s~~  126 (245)
T 3dtt_A           75 ------EHP-HVHLAAFADVAAGAELVVNATEGASSIAA-LTAAGAENL-AGKILVDIANP  126 (245)
T ss_dssp             ------GST-TCEEEEHHHHHHHCSEEEECSCGGGHHHH-HHHHCHHHH-TTSEEEECCCC
T ss_pred             ------hcC-ceeccCHHHHHhcCCEEEEccCcHHHHHH-HHHhhhhhc-CCCEEEECCCC
Confidence                  001 12356788999999999999998876542 2234 3444 44599999963

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=96.79  E-value=0.005  Score=58.89  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=55.3

Q ss_pred             cEEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAG-YVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .++.|||.| .+|.++|..|...  |.+|+++++.                                 |.++++.+++||
T Consensus       151 k~vvVvG~s~iVG~plA~lL~~~--gAtVtv~~~~---------------------------------t~~L~~~~~~AD  195 (276)
T 3ngx_A          151 NTVTIVNRSPVVGRPLSMMLLNR--NYTVSVCHSK---------------------------------TKDIGSMTRSSK  195 (276)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSCHHHHHHHSS
T ss_pred             CEEEEEcCChHHHHHHHHHHHHC--CCeEEEEeCC---------------------------------cccHHHhhccCC
Confidence            479999987 5899999999998  8999999752                                 245667789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      +||.+++.|.-.         +           ...+++|.+||+.++
T Consensus       196 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDvgi  223 (276)
T 3ngx_A          196 IVVVAVGRPGFL---------N-----------REMVTPGSVVIDVGI  223 (276)
T ss_dssp             EEEECSSCTTCB---------C-----------GGGCCTTCEEEECCC
T ss_pred             EEEECCCCCccc---------c-----------HhhccCCcEEEEecc
Confidence            999999876311         1           134688999887543

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=96.77  E-value=0.0029  Score=62.26  Aligned_cols=102  Identities=11%  Similarity=0.042  Sum_probs=73.9

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          -...+++.|...|.+|.+||+.....+   .+                     ..
T Consensus       135 ~~l~g~tvGIiG~G~----------IG~~vA~~l~~~G~~V~~~dr~~~~~~---~~---------------------~~  180 (315)
T 3pp8_A          135 YTREEFSVGIMGAGV----------LGAKVAESLQAWGFPLRCWSRSRKSWP---GV---------------------ES  180 (315)
T ss_dssp             CCSTTCCEEEECCSH----------HHHHHHHHHHTTTCCEEEEESSCCCCT---TC---------------------EE
T ss_pred             CCcCCCEEEEEeeCH----------HHHHHHHHHHHCCCEEEEEcCCchhhh---hh---------------------hh
Confidence            467899999999854          789999999999999999998654210   00                     00


Q ss_pred             eeeecCHHHhcccccEEEEEecc-cccccccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEW-DEFKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h-~~~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      .....++++.++++|+|+++++. ++-+.+=-.+..+.|++.+++||+.+  ++|.+.+
T Consensus       181 ~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL  239 (315)
T 3pp8_A          181 YVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADL  239 (315)
T ss_dssp             EESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHH
T ss_pred             hcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHH
Confidence            11125789999999999999885 34444333566788998889999865  5665443

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.76  E-value=0.0059  Score=60.51  Aligned_cols=42  Identities=17%  Similarity=0.207  Sum_probs=33.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eC--CHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVV-DI--SVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~--~~~~v~~l~~   44 (480)
                      +||+|+|.|++|.-++..|..+ ++.+|+++ |+  +++....+.+
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~-~~vevvaI~d~~~~~~~~a~l~~   48 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNS-GKVDIVAINDPFIDLNYMVYMFQ   48 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH-CSSEEEEEECSSSCHHHHHHHHH
T ss_pred             eEEEEEccCHHHHHHHHHHHcC-CCcEEEEecCCCCCHHHHHHHhh
Confidence            4999999999999999998876 57887765 53  7777766553

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.74  E-value=0.0076  Score=62.11  Aligned_cols=110  Identities=17%  Similarity=0.198  Sum_probs=74.5

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCC------CC
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPP------AS  397 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~  397 (480)
                      .-||+|+|+.|          ..+.++..|.+.|.+|.+||-.....+.... +      ..|+. .|....      ..
T Consensus         8 ~~~~~vIGlG~----------vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~-g------~~~~~-epgl~~~~~~~~~~   69 (446)
T 4a7p_A            8 SVRIAMIGTGY----------VGLVSGACFSDFGHEVVCVDKDARKIELLHQ-N------VMPIY-EPGLDALVASNVKA   69 (446)
T ss_dssp             CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCSTTHHHHTT-T------CCSSC-CTTHHHHHHHHHHT
T ss_pred             ceEEEEEcCCH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHhc-C------CCCcc-CCCHHHHHHhhccc
Confidence            46999999988          8899999999999999999987654332221 0      01110 000000      12


Q ss_pred             CceeeecCHHHhcccccEEEEEecccc---cccccH-------HHHHHhcCCCCEEEEcCCCCC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDE---FKTLDY-------QKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~---~~~~~~-------~~~~~~~~~~~~i~D~~~~~~  451 (480)
                      .++..++++.+++++||+++++++-|.   ....|.       +.+...+++..+||+...+..
T Consensus        70 g~l~~ttd~~ea~~~aDvvii~Vptp~~~~~~~~Dl~~v~~v~~~i~~~l~~g~iVV~~STv~p  133 (446)
T 4a7p_A           70 GRLSFTTDLAEGVKDADAVFIAVGTPSRRGDGHADLSYVFAAAREIAENLTKPSVIVTKSTVPV  133 (446)
T ss_dssp             TCEEEESCHHHHHTTCSEEEECCCCCBCTTTCCBCTHHHHHHHHHHHHSCCSCCEEEECSCCCT
T ss_pred             CCEEEECCHHHHHhcCCEEEEEcCCCCccccCCccHHHHHHHHHHHHHhcCCCCEEEEeCCCCc
Confidence            457788999999999999999965553   222332       456667777789999875543

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=96.74  E-value=0.0048  Score=64.58  Aligned_cols=114  Identities=13%  Similarity=0.131  Sum_probs=81.7

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHh-hhccccCCCCCCCCCCCCCCCCCceee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRD-LSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      ..+|+|+|+..          ....++..|.++|.+|.+||......+.... .        ++          ..++..
T Consensus        10 ~~~IgvIGlG~----------MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~--------~~----------~~gi~~   61 (497)
T 2p4q_A           10 SADFGLIGLAV----------MGQNLILNAADHGFTVCAYNRTQSKVDHFLANE--------AK----------GKSIIG   61 (497)
T ss_dssp             CCSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTT--------TT----------TSSEEC
T ss_pred             CCCEEEEeeHH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHccc--------cc----------CCCeEE
Confidence            45899999965          8999999999999999999987554322211 0        00          024666


Q ss_pred             ecCHHHhccc---ccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEec
Q 011654          403 VWDAYQAAKD---AHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIG  466 (480)
Q Consensus       403 ~~~~~~a~~~---ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG  466 (480)
                      +.++.+++++   +|+|++++..+ ..++ -.+.+...+++..+|||+.+.....      .+.+.|+.|.+.+
T Consensus        62 ~~s~~e~v~~l~~aDvVil~Vp~~~~v~~-vl~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~p  134 (497)
T 2p4q_A           62 ATSIEDFISKLKRPRKVMLLVKAGAPVDA-LINQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSG  134 (497)
T ss_dssp             CSSHHHHHHTSCSSCEEEECCCSSHHHHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             eCCHHHHHhcCCCCCEEEEEcCChHHHHH-HHHHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCC
Confidence            7889998887   99999999985 4444 2256667777667999999988642      1334588887654

>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*

Probab=96.71  E-value=0.0057  Score=57.83  Aligned_cols=32  Identities=22%  Similarity=0.483  Sum_probs=26.4

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEE-EeC
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAV-VDI   34 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~-~D~   34 (480)
                      |||+|+|+ |.||..++..+... +++++.+ +|+
T Consensus         1 mkV~V~Ga~G~mG~~i~~~~~~~-~~~elva~~d~   34 (245)
T 1p9l_A            1 MRVGVLGAKGKVGTTMVRAVAAA-DDLTLSAELDA   34 (245)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHC-TTCEEEEEECT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEcc
Confidence            79999997 99999999988764 5888874 554

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=96.69  E-value=0.0049  Score=59.67  Aligned_cols=108  Identities=14%  Similarity=0.151  Sum_probs=74.4

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      .+|+|+|+..          .+..++..|.+.|.+|.+||+.....+....                      .++....
T Consensus         6 m~i~iiG~G~----------~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~----------------------~g~~~~~   53 (299)
T 1vpd_A            6 MKVGFIGLGI----------MGKPMSKNLLKAGYSLVVSDRNPEAIADVIA----------------------AGAETAS   53 (299)
T ss_dssp             CEEEEECCST----------THHHHHHHHHHTTCEEEEECSCHHHHHHHHH----------------------TTCEECS
T ss_pred             ceEEEECchH----------HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----------------------CCCeecC
Confidence            3899999855          7889999999999999999986433222111                      1345667


Q ss_pred             CHHHhcccccEEEEEecccc-cccccH--HHHHHhcCCCCEEEEcCCCCCh--HH----HhhcCcEEEE
Q 011654          405 DAYQAAKDAHGVCILTEWDE-FKTLDY--QKIFDNMRKPAYIFDGRNILDV--EK----LREIGFIVYS  464 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~-~~~~~~--~~~~~~~~~~~~i~D~~~~~~~--~~----~~~~g~~y~~  464 (480)
                      +++++++++|+|+++++.+. ++..-.  +.+...+++..+|+|..+....  +.    +.+.|+.|..
T Consensus        54 ~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~  122 (299)
T 1vpd_A           54 TAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLD  122 (299)
T ss_dssp             SHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEE
T ss_pred             CHHHHHhCCCEEEEECCCHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE
Confidence            88899999999999998654 332111  2455666766799999887642  22    2334777754

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=96.67  E-value=0.0027  Score=57.29  Aligned_cols=73  Identities=29%  Similarity=0.323  Sum_probs=48.2

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |+|.|.|+ |.+|..++..|+++  |++|+++++++++.+.+......+..            +.+.-..++.++++++|
T Consensus         4 ~~ilVtGatG~iG~~l~~~l~~~--g~~V~~~~r~~~~~~~~~~~~~~~~~------------~D~~~~~~~~~~~~~~d   69 (206)
T 1hdo_A            4 KKIAIFGATGQTGLTTLAQAVQA--GYEVTVLVRDSSRLPSEGPRPAHVVV------------GDVLQAADVDKTVAGQD   69 (206)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCGGGSCSSSCCCSEEEE------------SCTTSHHHHHHHHTTCS
T ss_pred             CEEEEEcCCcHHHHHHHHHHHHC--CCeEEEEEeChhhcccccCCceEEEE------------ecCCCHHHHHHHHcCCC
Confidence            68999997 99999999999998  99999999997654321111000000            00100112345677899


Q ss_pred             EEEEeccC
Q 011654           81 IVFVSVNT   88 (480)
Q Consensus        81 vVii~Vpt   88 (480)
                      +||-+...
T Consensus        70 ~vi~~a~~   77 (206)
T 1hdo_A           70 AVIVLLGT   77 (206)
T ss_dssp             EEEECCCC
T ss_pred             EEEECccC
Confidence            99999764

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=96.65  E-value=0.0023  Score=61.55  Aligned_cols=103  Identities=8%  Similarity=0.044  Sum_probs=64.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-cCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-EAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-~aD   80 (480)
                      ++|.|+|+|.+|.+++..|++.  |.+|++++|++++.+.+.+..            ..  .+.+.+ .++++..+ ++|
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~--G~~v~v~~R~~~~a~~l~~~~------------~~--~~~~~~-~~~~~~~~~~~D  182 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQA--QQNIVLANRTFSKTKELAERF------------QP--YGNIQA-VSMDSIPLQTYD  182 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHT--TCEEEEEESSHHHHHHHHHHH------------GG--GSCEEE-EEGGGCCCSCCS
T ss_pred             CEEEEECCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHc------------cc--cCCeEE-eeHHHhccCCCC
Confidence            5799999999999999999998  899999999999888776320            00  012322 23343223 899


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      +||-|+|.+...+      .+++.      ..   .++++.+|++.++.|...++.
T Consensus       183 ivIn~t~~~~~~~------~~~i~------~~---~l~~~~~v~D~~y~p~~~t~l  223 (272)
T 1p77_A          183 LVINATSAGLSGG------TASVD------AE---ILKLGSAFYDMQYAKGTDTPF  223 (272)
T ss_dssp             EEEECCCC-------------CCC------HH---HHHHCSCEEESCCCTTSCCHH
T ss_pred             EEEECCCCCCCCC------CCCCC------HH---HcCCCCEEEEeeCCCCcCCHH
Confidence            9999987643210      00010      01   123577888888876652343

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=96.65  E-value=0.0046  Score=61.09  Aligned_cols=118  Identities=19%  Similarity=0.206  Sum_probs=67.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcC-------CCCeEEE-EeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEec-
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKC-------PKIEVAV-VDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFST-   70 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~-------~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~-   70 (480)
                      |+||+|||+|.||..++..|.++.       ++.+|++ +|+++++.+.          ..+.+.+.. ...+  .+++ 
T Consensus         2 mirvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~----------id~~~~~~~~~~~~--~~~~~   69 (327)
T 3do5_A            2 MIKIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGD----------FSLVEALRMKRETG--MLRDD   69 (327)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESS----------CCHHHHHHHHHHHS--SCSBC
T ss_pred             cEEEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccc----------cCHHHHHhhhccCc--cccCC
Confidence            689999999999999999987641       3666664 5776433211          011111110 0001  1233 


Q ss_pred             -CHHHHhc--cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccc-hHHHHHHHHHhc
Q 011654           71 -DIEKHVA--EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVK-TAEAIEKILTHN  144 (480)
Q Consensus        71 -d~~~a~~--~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g-t~~~l~~~l~~~  144 (480)
                       |+++.+.  +.|+|++|+|+..+.             .+ +.+.+...+..|.-|+.+++-|.. ..++|.+..++.
T Consensus        70 ~d~~~ll~~~~iDvVv~~tp~~~h~-------------~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~  133 (327)
T 3do5_A           70 AKAIEVVRSADYDVLIEASVTRVDG-------------GE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERN  133 (327)
T ss_dssp             CCHHHHHHHSCCSEEEECCCCC-----------------C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHhcCCCCCEEEECCCCcccc-------------hh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhh
Confidence             7777664  589999998865321             12 344455567788888876554433 234455555544

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=96.65  E-value=0.006  Score=59.88  Aligned_cols=98  Identities=16%  Similarity=0.110  Sum_probs=72.0

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC--EEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA--KLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      ...+|+|+|+.-          ....++..|.+.|.  +|.+||+.....+...+++.                    .-
T Consensus        32 ~~~kI~IIG~G~----------mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~--------------------~~   81 (314)
T 3ggo_A           32 SMQNVLIVGVGF----------MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI--------------------ID   81 (314)
T ss_dssp             SCSEEEEESCSH----------HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS--------------------CS
T ss_pred             CCCEEEEEeeCH----------HHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCC--------------------cc
Confidence            357999999855          78899999999999  99999997543332222210                    00


Q ss_pred             eeecCHHH-hcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011654          401 NVVWDAYQ-AAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       401 ~~~~~~~~-a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~  451 (480)
                      ...+++++ +++++|+||++++-....++ .+++...+++..+|+|..++-.
T Consensus        82 ~~~~~~~~~~~~~aDvVilavp~~~~~~v-l~~l~~~l~~~~iv~d~~Svk~  132 (314)
T 3ggo_A           82 EGTTSIAKVEDFSPDFVMLSSPVRTFREI-AKKLSYILSEDATVTDQGSVKG  132 (314)
T ss_dssp             EEESCTTGGGGGCCSEEEECSCGGGHHHH-HHHHHHHSCTTCEEEECCSCCT
T ss_pred             hhcCCHHHHhhccCCEEEEeCCHHHHHHH-HHHHhhccCCCcEEEECCCCcH
Confidence            34567788 89999999999987765542 3567777877789999987753

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.62  E-value=0.011  Score=56.85  Aligned_cols=67  Identities=13%  Similarity=0.122  Sum_probs=51.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|.|||+|-+|.+++..|++.  |. +|++++|++++.+.+.+..                 + ..+..++.  +.++|
T Consensus       120 ~~vlvlGaGgaarav~~~L~~~--G~~~i~v~nRt~~ka~~la~~~-----------------~-~~~~~~~~--~~~~D  177 (271)
T 1npy_A          120 AKVIVHGSGGMAKAVVAAFKNS--GFEKLKIYARNVKTGQYLAALY-----------------G-YAYINSLE--NQQAD  177 (271)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHT--TCCCEEEECSCHHHHHHHHHHH-----------------T-CEEESCCT--TCCCS
T ss_pred             CEEEEECCcHHHHHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHc-----------------C-Cccchhhh--cccCC
Confidence            4799999999999999999988  76 8999999999888776420                 0 12222222  46899


Q ss_pred             EEEEeccCCC
Q 011654           81 IVFVSVNTPT   90 (480)
Q Consensus        81 vVii~Vptp~   90 (480)
                      +||-|+|...
T Consensus       178 ivInaTp~gm  187 (271)
T 1npy_A          178 ILVNVTSIGM  187 (271)
T ss_dssp             EEEECSSTTC
T ss_pred             EEEECCCCCc
Confidence            9999988654

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=96.61  E-value=0.0048  Score=61.17  Aligned_cols=99  Identities=14%  Similarity=0.184  Sum_probs=73.8

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          -...+++.|...|++|.+|||..... . .                       ..
T Consensus       141 ~~l~g~~vgIiG~G~----------IG~~~A~~l~~~G~~V~~~d~~~~~~-~-~-----------------------~~  185 (333)
T 1dxy_A          141 KELGQQTVGVMGTGH----------IGQVAIKLFKGFGAKVIAYDPYPMKG-D-H-----------------------PD  185 (333)
T ss_dssp             CCGGGSEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSCCSS-C-C-----------------------TT
T ss_pred             cCCCCCEEEEECcCH----------HHHHHHHHHHHCCCEEEEECCCcchh-h-H-----------------------hc
Confidence            467899999999854          78999999999999999999976432 0 0                       01


Q ss_pred             eeeecCHHHhcccccEEEEEecccc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDE-FKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~-~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      ..+ .++++.++++|+|++++.... .+. ++ ....+.|++.+++||+.+  +.+.+.+
T Consensus       186 ~~~-~~l~ell~~aDvV~~~~P~~~~t~~li~-~~~l~~mk~ga~lIn~srg~~vd~~aL  243 (333)
T 1dxy_A          186 FDY-VSLEDLFKQSDVIDLHVPGIEQNTHIIN-EAAFNLMKPGAIVINTARPNLIDTQAM  243 (333)
T ss_dssp             CEE-CCHHHHHHHCSEEEECCCCCGGGTTSBC-HHHHHHSCTTEEEEECSCTTSBCHHHH
T ss_pred             ccc-CCHHHHHhcCCEEEEcCCCchhHHHHhC-HHHHhhCCCCcEEEECCCCcccCHHHH
Confidence            233 378999999999999988744 444 34 456688998889999865  4565443

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=96.61  E-value=0.005  Score=60.41  Aligned_cols=90  Identities=14%  Similarity=0.100  Sum_probs=69.1

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          .+..+++.|...|.+|.+|||......                            
T Consensus       140 ~~l~g~~vgIIG~G~----------IG~~~A~~l~~~G~~V~~~d~~~~~~~----------------------------  181 (311)
T 2cuk_A          140 LDLQGLTLGLVGMGR----------IGQAVAKRALAFGMRVVYHARTPKPLP----------------------------  181 (311)
T ss_dssp             CCCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSCCSSS----------------------------
T ss_pred             cCCCCCEEEEEEECH----------HHHHHHHHHHHCCCEEEEECCCCcccc----------------------------
Confidence            356889999999854          788999999999999999999754311                            


Q ss_pred             eeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCC
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRN  448 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~  448 (480)
                      +. ..++++.++++|+|+++++.. +.+++=-......|++.+++||+.+
T Consensus       182 ~~-~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~sr  230 (311)
T 2cuk_A          182 YP-FLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTAR  230 (311)
T ss_dssp             SC-BCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSC
T ss_pred             cc-cCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCC
Confidence            11 347889999999999998775 3444322345678988889999976

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=96.60  E-value=0.0038  Score=63.64  Aligned_cols=42  Identities=26%  Similarity=0.408  Sum_probs=36.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCC---CeEEEEeCCHHHHHHHHC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPK---IEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G---~~V~~~D~~~~~v~~l~~   44 (480)
                      |+||.|||+|.+|..++..|++.  |   .+|+++|+++++.+.+.+
T Consensus         1 M~kVlIiGaGgiG~~ia~~L~~~--g~~~~~V~v~~r~~~~~~~la~   45 (405)
T 4ina_A            1 MAKVLQIGAGGVGGVVAHKMAMN--REVFSHITLASRTLSKCQEIAQ   45 (405)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTC--TTTCCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC--CCCceEEEEEECCHHHHHHHHH
Confidence            78999999999999999999987  5   389999999998887664

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=96.60  E-value=0.004  Score=59.77  Aligned_cols=100  Identities=13%  Similarity=0.114  Sum_probs=66.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~aD   80 (480)
                      +++.|+|+|.+|.++|..|++.  |.+|++++|++++.+.+.+...            .  .+.+.. .+.++.. ..+|
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~--G~~V~v~~R~~~~~~~la~~~~------------~--~~~~~~-~~~~~~~~~~~D  182 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSL--DCAVTITNRTVSRAEELAKLFA------------H--TGSIQA-LSMDELEGHEFD  182 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHTG------------G--GSSEEE-CCSGGGTTCCCS
T ss_pred             CEEEEECCcHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHHHhh------------c--cCCeeE-ecHHHhccCCCC
Confidence            5799999999999999999998  8999999999998877764210            0  012322 2333322 4899


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      +||-|+|.+...+      .+++.         ...++++.++++.++.|..|
T Consensus       183 ivVn~t~~~~~~~------~~~i~---------~~~l~~~~~v~D~~y~p~~t  220 (271)
T 1nyt_A          183 LIINATSSGISGD------IPAIP---------SSLIHPGIYCYDMFYQKGKT  220 (271)
T ss_dssp             EEEECCSCGGGTC------CCCCC---------GGGCCTTCEEEESCCCSSCC
T ss_pred             EEEECCCCCCCCC------CCCCC---------HHHcCCCCEEEEeccCCcCC
Confidence            9999987643210      01110         12356788899888876444

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=96.60  E-value=0.0087  Score=57.93  Aligned_cols=72  Identities=17%  Similarity=0.335  Sum_probs=55.9

Q ss_pred             cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .++.|||.|. +|.++|..|...  |.+|+++++.                                 +.++.+.++.||
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~hs~---------------------------------t~~L~~~~~~AD  210 (301)
T 1a4i_A          166 RHAVVVGRSKIVGAPMHDLLLWN--NATVTTCHSK---------------------------------TAHLDEEVNKGD  210 (301)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSSHHHHHTTCS
T ss_pred             CEEEEECCCchHHHHHHHHHHhC--CCeEEEEECC---------------------------------cccHHHHhccCC
Confidence            4799999995 899999999998  8999999742                                 245667789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      +||.+++.|.-.         .           ...+++|.+||+.+.
T Consensus       211 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDVgi  238 (301)
T 1a4i_A          211 ILVVATGQPEMV---------K-----------GEWIKPGAIVIDCGI  238 (301)
T ss_dssp             EEEECCCCTTCB---------C-----------GGGSCTTCEEEECCC
T ss_pred             EEEECCCCcccC---------C-----------HHHcCCCcEEEEccC
Confidence            999999876311         1           123578999997654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=96.57  E-value=0.0031  Score=58.63  Aligned_cols=71  Identities=18%  Similarity=0.167  Sum_probs=54.1

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCC-CCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQL-PIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~-~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |+|.|.|+ |.+|..++..|++.  |++|++++|++++.+.+..... .+..            +.++  .++.+++.++
T Consensus        22 ~~ilVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~~~~~~~~~~~~~~~~~------------~Dl~--~~~~~~~~~~   85 (236)
T 3e8x_A           22 MRVLVVGANGKVARYLLSELKNK--GHEPVAMVRNEEQGPELRERGASDIVV------------ANLE--EDFSHAFASI   85 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHHTTCSEEEE------------CCTT--SCCGGGGTTC
T ss_pred             CeEEEECCCChHHHHHHHHHHhC--CCeEEEEECChHHHHHHHhCCCceEEE------------cccH--HHHHHHHcCC
Confidence            78999997 99999999999998  9999999999988877664321 1111            1111  4456678899


Q ss_pred             cEEEEeccC
Q 011654           80 DIVFVSVNT   88 (480)
Q Consensus        80 DvVii~Vpt   88 (480)
                      |+||-+...
T Consensus        86 D~vi~~ag~   94 (236)
T 3e8x_A           86 DAVVFAAGS   94 (236)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEECCCC
Confidence            999999764

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.57  E-value=0.0038  Score=59.10  Aligned_cols=95  Identities=14%  Similarity=0.092  Sum_probs=62.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |+|++||+|.||..++..   .  ++++. +|+   ++.     +..                 +..+++|+++.++++|
T Consensus        13 ~rV~i~G~GaIG~~v~~~---~--~leLv~v~~---~k~-----gel-----------------gv~a~~d~d~lla~pD   62 (253)
T 1j5p_A           13 MTVLIIGMGNIGKKLVEL---G--NFEKIYAYD---RIS-----KDI-----------------PGVVRLDEFQVPSDVS   62 (253)
T ss_dssp             CEEEEECCSHHHHHHHHH---S--CCSEEEEEC---SSC-----CCC-----------------SSSEECSSCCCCTTCC
T ss_pred             ceEEEECcCHHHHHHHhc---C--CcEEEEEEe---ccc-----ccc-----------------CceeeCCHHHHhhCCC
Confidence            899999999999998887   3  67764 566   221     110                 2346788888778999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC---ccchHHHHHHHHHhc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV---PVKTAEAIEKILTHN  144 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv---~~gt~~~l~~~l~~~  144 (480)
                      +|+.|-+.                  ..+.+.+.+.|+.|.-|+..|..   ++...++|.+..++.
T Consensus        63 ~VVe~A~~------------------~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~g  111 (253)
T 1j5p_A           63 TVVECASP------------------EAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNS  111 (253)
T ss_dssp             EEEECSCH------------------HHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTC
T ss_pred             EEEECCCH------------------HHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHC
Confidence            99999531                  22333477788888888776643   333344454444443

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=96.56  E-value=0.0041  Score=62.66  Aligned_cols=98  Identities=12%  Similarity=0.173  Sum_probs=71.7

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +..+.+++|+|+|+.-          -...+++.|...|.+|.+|||.....    ..                      
T Consensus       111 ~~~l~g~tvGIIGlG~----------IG~~vA~~l~~~G~~V~~~d~~~~~~----~~----------------------  154 (380)
T 2o4c_A          111 GADLAERTYGVVGAGQ----------VGGRLVEVLRGLGWKVLVCDPPRQAR----EP----------------------  154 (380)
T ss_dssp             TCCGGGCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECHHHHHH----ST----------------------
T ss_pred             hcccCCCEEEEEeCCH----------HHHHHHHHHHHCCCEEEEEcCChhhh----cc----------------------
Confidence            4567899999999754          78899999999999999999853211    11                      


Q ss_pred             ceeeecCHHHhcccccEEEEEecccc-----ccc-ccHHHHHHhcCCCCEEEEcCC--CCChHH
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDE-----FKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEK  454 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~-----~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~  454 (480)
                      +.. ..++++.++++|+|++++....     -+. ++ ..+.+.|++.+++||+.+  +.+.+.
T Consensus       155 g~~-~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~-~~~l~~mk~gailIN~sRG~vvd~~a  216 (380)
T 2o4c_A          155 DGE-FVSLERLLAEADVISLHTPLNRDGEHPTRHLLD-EPRLAALRPGTWLVNASRGAVVDNQA  216 (380)
T ss_dssp             TSC-CCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBC-HHHHHTSCTTEEEEECSCGGGBCHHH
T ss_pred             Ccc-cCCHHHHHHhCCEEEEeccCccccccchhhhcC-HHHHhhCCCCcEEEECCCCcccCHHH
Confidence            111 2478999999999999987643     223 34 456788998889999875  455443

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=96.55  E-value=0.0043  Score=61.68  Aligned_cols=104  Identities=13%  Similarity=0.113  Sum_probs=60.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHHHHHHCCC-CCCCCCC--hHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISVSRIAAWNGDQ-LPIYEPG--LEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v~~l~~~~-~~~~e~~--l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      +||+|+|+|.+|..++..|..+ ++++|++ .|.+++....+.+-. ...+..-  -.++.. ...+.+....+..+...
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~-~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~-~~~~~l~v~~~~~~~~~   80 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQ-DDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKL-FEDAGIPVEGTILDIIE   80 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHS-SSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHH-HHHTTCCCCCBGGGTGG
T ss_pred             eEEEEECCCHHHHHHHHHHHhC-CCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeec-ccCCeEEECCchHHhcc
Confidence            5999999999999999998875 4678665 466665554443210 0111110  011100 01123444445555567


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHH-HhhCCCCCEEEE
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMI-ANVSNSNKIVVE  125 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i-~~~l~~~~iVi~  125 (480)
                      ++|+||.|+|...                  ..+.. ..+++.|..||+
T Consensus        81 ~vDiV~eatg~~~------------------s~~~a~~~~l~aG~~VI~  111 (343)
T 2yyy_A           81 DADIVVDGAPKKI------------------GKQNLENIYKPHKVKAIL  111 (343)
T ss_dssp             GCSEEEECCCTTH------------------HHHHHHHTTTTTTCEEEE
T ss_pred             CCCEEEECCCccc------------------cHHHHHHHHHHCCCEEEE
Confidence            9999999976321                  01222 367788887775

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=96.55  E-value=0.036  Score=53.60  Aligned_cols=105  Identities=15%  Similarity=0.092  Sum_probs=66.9

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E   78 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~   78 (480)
                      +||+|+|+ |.||..++..+.+.  |++ .++.+|+.+.     +..               ..++.+..+++++.+  .
T Consensus         8 ~~VaVvGasG~~G~~~~~~l~~~--g~~-~v~~VnP~~~-----g~~---------------i~G~~vy~sl~el~~~~~   64 (288)
T 1oi7_A            8 TRVLVQGITGREGQFHTKQMLTY--GTK-IVAGVTPGKG-----GME---------------VLGVPVYDTVKEAVAHHE   64 (288)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCT-----TCE---------------ETTEEEESSHHHHHHHSC
T ss_pred             CEEEEECCCCCHHHHHHHHHHHc--CCe-EEEEECCCCC-----Cce---------------ECCEEeeCCHHHHhhcCC
Confidence            58999998 99999999999887  888 4456655421     100               024677888888777  8


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~  145 (480)
                      +|++++++|.+               ...+++++..+. .-..+|+..+.++....+++.+..++.+
T Consensus        65 ~Dv~Ii~vp~~---------------~~~~~~~ea~~~-Gi~~vVi~t~G~~~~~~~~l~~~a~~~g  115 (288)
T 1oi7_A           65 VDASIIFVPAP---------------AAADAALEAAHA-GIPLIVLITEGIPTLDMVRAVEEIKALG  115 (288)
T ss_dssp             CSEEEECCCHH---------------HHHHHHHHHHHT-TCSEEEECCSCCCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEecCHH---------------HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence            99999998742               234455554442 1223444444444433456666666653

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.55  E-value=0.011  Score=57.00  Aligned_cols=118  Identities=14%  Similarity=0.019  Sum_probs=76.0

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhh-----h---ccccCCCCCCCCCCCCCC
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDL-----S---MKKFDWDHPIHLQPMSPP  395 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~  395 (480)
                      -++|+|+|...          ....++..|.+.|++|.+||+.....+.....     .   ..+......     ....
T Consensus         4 ~~kV~VIGaG~----------mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~-----~~~~   68 (283)
T 4e12_A            4 ITNVTVLGTGV----------LGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADG-----AAQK   68 (283)
T ss_dssp             CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTT-----HHHH
T ss_pred             CCEEEEECCCH----------HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHH-----HHHH
Confidence            46999999854          88999999999999999999865432211110     0   000000000     0000


Q ss_pred             CCCceeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCCCChHHHh
Q 011654          396 ASKQVNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLR  456 (480)
Q Consensus       396 ~~~~~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~  456 (480)
                      ...++...+++.++++++|.||+++.-+ +.+..-++++...+++..+|++..+.++...+.
T Consensus        69 ~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~~~~~la  130 (283)
T 4e12_A           69 ALGGIRYSDDLAQAVKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTLLPSDLV  130 (283)
T ss_dssp             HHHHCEEESCHHHHTTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHH
T ss_pred             HHcCeEEeCCHHHHhccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHH
Confidence            0123566789999999999999998765 233333567777888777899888877766543

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=96.53  E-value=0.004  Score=59.26  Aligned_cols=102  Identities=14%  Similarity=0.146  Sum_probs=73.3

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCE-EEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCcee
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAK-LSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVN  401 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~-V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (480)
                      ...+|+|+|...          .+..++..|.+.|.+ |.+||+.....+.....                     .++.
T Consensus         9 ~~m~i~iiG~G~----------mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~---------------------~g~~   57 (266)
T 3d1l_A            9 EDTPIVLIGAGN----------LATNLAKALYRKGFRIVQVYSRTEESARELAQK---------------------VEAE   57 (266)
T ss_dssp             GGCCEEEECCSH----------HHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHH---------------------TTCE
T ss_pred             CCCeEEEEcCCH----------HHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHH---------------------cCCc
Confidence            346899999855          788899999999998 99999854332211110                     1245


Q ss_pred             eecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHh
Q 011654          402 VVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLR  456 (480)
Q Consensus       402 ~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~  456 (480)
                      ...+++++++++|+|++++..+..+++ .+.+...+++..+|+|+.+.++.+.+.
T Consensus        58 ~~~~~~~~~~~~Dvvi~av~~~~~~~v-~~~l~~~~~~~~ivv~~s~~~~~~~l~  111 (266)
T 3d1l_A           58 YTTDLAEVNPYAKLYIVSLKDSAFAEL-LQGIVEGKREEALMVHTAGSIPMNVWE  111 (266)
T ss_dssp             EESCGGGSCSCCSEEEECCCHHHHHHH-HHHHHTTCCTTCEEEECCTTSCGGGST
T ss_pred             eeCCHHHHhcCCCEEEEecCHHHHHHH-HHHHHhhcCCCcEEEECCCCCchHHHH
Confidence            567888889999999999988865432 245666665667999999988766554

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=96.51  E-value=0.008  Score=58.19  Aligned_cols=72  Identities=21%  Similarity=0.338  Sum_probs=54.6

Q ss_pred             cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHH--HHhcc
Q 011654            2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIE--KHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~--~a~~~   78 (480)
                      .++.|||.|. +|.++|..|...  |.+|+++++..                                 .+++  +.+++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~~~~T---------------------------------~~l~l~~~~~~  210 (300)
T 4a26_A          166 KRAVVLGRSNIVGAPVAALLMKE--NATVTIVHSGT---------------------------------STEDMIDYLRT  210 (300)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTTS---------------------------------CHHHHHHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCCC---------------------------------CCchhhhhhcc
Confidence            4799999876 899999999998  89999998621                                 1233  56889


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      ||+||.+++.|.-.         .           ...+++|.+||+.++
T Consensus       211 ADIVI~Avg~p~~I---------~-----------~~~vk~GavVIDvgi  240 (300)
T 4a26_A          211 ADIVIAAMGQPGYV---------K-----------GEWIKEGAAVVDVGT  240 (300)
T ss_dssp             CSEEEECSCCTTCB---------C-----------GGGSCTTCEEEECCC
T ss_pred             CCEEEECCCCCCCC---------c-----------HHhcCCCcEEEEEec
Confidence            99999999876311         1           134688999997554

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=96.51  E-value=0.0027  Score=61.37  Aligned_cols=103  Identities=11%  Similarity=0.046  Sum_probs=67.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +++.|+|+|.+|.+++..|++.  |. +|++++|++++.+.+.+..            ..  .+.+.+. ++++...++|
T Consensus       127 k~vlvlGaGg~g~aia~~L~~~--G~~~v~v~~R~~~~a~~la~~~------------~~--~~~~~~~-~~~~l~~~aD  189 (281)
T 3o8q_A          127 ATILLIGAGGAARGVLKPLLDQ--QPASITVTNRTFAKAEQLAELV------------AA--YGEVKAQ-AFEQLKQSYD  189 (281)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--CCSEEEEEESSHHHHHHHHHHH------------GG--GSCEEEE-EGGGCCSCEE
T ss_pred             CEEEEECchHHHHHHHHHHHhc--CCCeEEEEECCHHHHHHHHHHh------------hc--cCCeeEe-eHHHhcCCCC
Confidence            4799999999999999999988  85 9999999999888776420            00  0123332 3344336899


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHH
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAI  137 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l  137 (480)
                      +||-|+|.....+      .+.+.         ...++++.+|++.+..|..| ..+
T Consensus       190 iIInaTp~gm~~~------~~~l~---------~~~l~~~~~V~DlvY~P~~T-~ll  230 (281)
T 3o8q_A          190 VIINSTSASLDGE------LPAID---------PVIFSSRSVCYDMMYGKGYT-VFN  230 (281)
T ss_dssp             EEEECSCCCC----------CSCC---------GGGEEEEEEEEESCCCSSCC-HHH
T ss_pred             EEEEcCcCCCCCC------CCCCC---------HHHhCcCCEEEEecCCCccC-HHH
Confidence            9999987653210      01110         12456788888888776444 444

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=96.50  E-value=0.0061  Score=60.33  Aligned_cols=98  Identities=12%  Similarity=0.120  Sum_probs=72.8

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          ....+++.|...|++|.+|||..... . .                       ..
T Consensus       142 ~~l~g~~vgIiG~G~----------IG~~~A~~l~~~G~~V~~~d~~~~~~-~-~-----------------------~~  186 (331)
T 1xdw_A          142 KEVRNCTVGVVGLGR----------IGRVAAQIFHGMGATVIGEDVFEIKG-I-E-----------------------DY  186 (331)
T ss_dssp             CCGGGSEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSCCCS-C-T-----------------------TT
T ss_pred             cCCCCCEEEEECcCH----------HHHHHHHHHHHCCCEEEEECCCccHH-H-H-----------------------hc
Confidence            356789999999854          78899999999999999999976432 0 0                       01


Q ss_pred             eeeecCHHHhcccccEEEEEeccc-cccc-ccHHHHHHhcCCCCEEEEcCC--CCChHH
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWD-EFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEK  454 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~-~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~  454 (480)
                      +.+ .++++.++++|+|++++... +.+. ++ ....+.|++.+++||+.+  +.+.+.
T Consensus       187 ~~~-~~l~ell~~aDvV~~~~p~t~~t~~li~-~~~l~~mk~ga~lin~srg~~vd~~a  243 (331)
T 1xdw_A          187 CTQ-VSLDEVLEKSDIITIHAPYIKENGAVVT-RDFLKKMKDGAILVNCARGQLVDTEA  243 (331)
T ss_dssp             CEE-CCHHHHHHHCSEEEECCCCCTTTCCSBC-HHHHHTSCTTEEEEECSCGGGBCHHH
T ss_pred             ccc-CCHHHHHhhCCEEEEecCCchHHHHHhC-HHHHhhCCCCcEEEECCCcccccHHH
Confidence            223 37899999999999988764 3444 34 456678998889999976  556543

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=96.49  E-value=0.0035  Score=62.26  Aligned_cols=93  Identities=22%  Similarity=0.149  Sum_probs=67.9

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCCh-HHHHHhhhccccCCCCCCCCCCCCCCCCCcee
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTE-DQIQRDLSMKKFDWDHPIHLQPMSPPASKQVN  401 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (480)
                      ++.+|+|+|+..          .+..++..|.+.|.+|.+||+.... .+....+                      ++.
T Consensus        15 ~~~~I~IIG~G~----------mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~----------------------G~~   62 (338)
T 1np3_A           15 QGKKVAIIGYGS----------QGHAHACNLKDSGVDVTVGLRSGSATVAKAEAH----------------------GLK   62 (338)
T ss_dssp             HTSCEEEECCSH----------HHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHT----------------------TCE
T ss_pred             cCCEEEEECchH----------HHHHHHHHHHHCcCEEEEEECChHHHHHHHHHC----------------------CCE
Confidence            467899999854          8889999999999999999997654 2222221                      234


Q ss_pred             eecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC
Q 011654          402 VVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN  448 (480)
Q Consensus       402 ~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~  448 (480)
                      .. +..++++++|+|+++++.....++--+++...+++.++|+|+.+
T Consensus        63 ~~-~~~e~~~~aDvVilavp~~~~~~v~~~~i~~~l~~~~ivi~~~g  108 (338)
T 1np3_A           63 VA-DVKTAVAAADVVMILTPDEFQGRLYKEEIEPNLKKGATLAFAHG  108 (338)
T ss_dssp             EE-CHHHHHHTCSEEEECSCHHHHHHHHHHHTGGGCCTTCEEEESCC
T ss_pred             Ec-cHHHHHhcCCEEEEeCCcHHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence            44 78889999999999998876543211255566776679999865

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=96.48  E-value=0.0099  Score=61.36  Aligned_cols=108  Identities=14%  Similarity=0.091  Sum_probs=72.9

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCC------CCC
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPP------ASK  398 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  398 (480)
                      .||+|+|+.|          ....++..|.+.|.+|.+||......+.... +      ..|+. .+....      ...
T Consensus         3 mkI~VIG~G~----------vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~-g------~~~i~-e~gl~~~l~~~~~~~   64 (450)
T 3gg2_A            3 LDIAVVGIGY----------VGLVSATCFAELGANVRCIDTDRNKIEQLNS-G------TIPIY-EPGLEKMIARNVKAG   64 (450)
T ss_dssp             CEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-T------CSCCC-STTHHHHHHHHHHTT
T ss_pred             CEEEEECcCH----------HHHHHHHHHHhcCCEEEEEECCHHHHHHHHc-C------CCccc-CCCHHHHHHhhcccC
Confidence            4899999988          8899999999999999999986433222111 0      00110 000000      023


Q ss_pred             ceeeecCHHHhcccccEEEEEecccc----------cccccHHHHHHhcCCCCEEEEcCCCCC
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDE----------FKTLDYQKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~----------~~~~~~~~~~~~~~~~~~i~D~~~~~~  451 (480)
                      ++..++++.++++++|+++++++-+.          .++ -.+.+...+++..+|++...+..
T Consensus        65 ~l~~t~d~~ea~~~aDvViiaVptp~~~~~~~dl~~v~~-v~~~i~~~l~~g~iVV~~STv~p  126 (450)
T 3gg2_A           65 RLRFGTEIEQAVPEADIIFIAVGTPAGEDGSADMSYVLD-AARSIGRAMSRYILIVTKSTVPV  126 (450)
T ss_dssp             SEEEESCHHHHGGGCSEEEECCCCCBCTTSSBCCHHHHH-HHHHHHHHCCSCEEEEECSCCCT
T ss_pred             cEEEECCHHHHHhcCCEEEEEcCCCcccCCCcChHHHHH-HHHHHHhhCCCCCEEEEeeeCCC
Confidence            57788899999999999999997762          222 23466677777789999987553

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=96.48  E-value=0.014  Score=61.05  Aligned_cols=114  Identities=19%  Similarity=0.211  Sum_probs=69.9

Q ss_pred             CcEEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHH-HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGAGYVGGP-TMAVIALKCPKIEVAVVDISVS-RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      +++|.|||+|-.|.+ +|..|.++  |++|+++|..+. ..+.|.+...+                 +..-.+.+ .+.+
T Consensus        22 ~~~v~viGiG~sG~s~~A~~l~~~--G~~V~~~D~~~~~~~~~l~~~gi~-----------------~~~g~~~~-~~~~   81 (494)
T 4hv4_A           22 VRHIHFVGIGGAGMGGIAEVLANE--GYQISGSDLAPNSVTQHLTALGAQ-----------------IYFHHRPE-NVLD   81 (494)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHT--TCEEEEECSSCCHHHHHHHHTTCE-----------------EESSCCGG-GGTT
T ss_pred             CCEEEEEEEcHhhHHHHHHHHHhC--CCeEEEEECCCCHHHHHHHHCCCE-----------------EECCCCHH-HcCC
Confidence            368999999999996 89999998  999999998643 23344432111                 11112333 3678


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHH----------HHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAAR----------MIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS  145 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~----------~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~  145 (480)
                      +|+||++-.-|.           |...+..+.+          -+...++...+|.+..|..-.||.. +..+|++.+
T Consensus        82 ~d~vV~Spgi~~-----------~~p~~~~a~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  148 (494)
T 4hv4_A           82 ASVVVVSTAISA-----------DNPEIVAAREARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAEAG  148 (494)
T ss_dssp             CSEEEECTTSCT-----------TCHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred             CCEEEECCCCCC-----------CCHHHHHHHHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHhcC
Confidence            999998743332           1122333322          2333444445777777877666665 567887654

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=96.47  E-value=0.015  Score=60.41  Aligned_cols=101  Identities=16%  Similarity=0.091  Sum_probs=72.6

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +..+.+++|+|+|+.-          -...+++.|...|++|.+|||..........                      .
T Consensus       272 g~~L~GktVgIIG~G~----------IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~----------------------~  319 (494)
T 3d64_A          272 DVMIAGKIAVVAGYGD----------VGKGCAQSLRGLGATVWVTEIDPICALQAAM----------------------E  319 (494)
T ss_dssp             CCCCTTCEEEEECCSH----------HHHHHHHHHHTTTCEEEEECSCHHHHHHHHT----------------------T
T ss_pred             ccccCCCEEEEEccCH----------HHHHHHHHHHHCCCEEEEEeCChHhHHHHHH----------------------c
Confidence            4468999999999744          7788999999999999999998653211111                      1


Q ss_pred             ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC---CChHHH
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI---LDVEKL  455 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~  455 (480)
                      +..+ .+++++++.+|+|++++.-..+  ++ .+..+.|++.++|+|+-+.   +|.+.+
T Consensus       320 G~~~-~~l~ell~~aDiVi~~~~t~~l--I~-~~~l~~MK~gAilINvgrg~veID~~aL  375 (494)
T 3d64_A          320 GYRV-VTMEYAADKADIFVTATGNYHV--IN-HDHMKAMRHNAIVCNIGHFDSEIDVAST  375 (494)
T ss_dssp             TCEE-CCHHHHTTTCSEEEECSSSSCS--BC-HHHHHHCCTTEEEEECSSSSCSBCCGGG
T ss_pred             CCEe-CCHHHHHhcCCEEEECCCcccc--cC-HHHHhhCCCCcEEEEcCCCcchhchHHH
Confidence            2232 4789999999999999832222  44 3556789988899998653   365555

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=96.46  E-value=0.013  Score=56.19  Aligned_cols=99  Identities=16%  Similarity=0.110  Sum_probs=65.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~a   79 (480)
                      .++.|+|+|-+|.+++..|++.  |. +|++++|++++.+.+.+...               .+.+.+. ++++.- .++
T Consensus       121 k~~lvlGaGg~~~aia~~L~~~--G~~~v~i~~R~~~~a~~la~~~~---------------~~~~~~~-~~~~l~~~~~  182 (272)
T 3pwz_A          121 RRVLLLGAGGAVRGALLPFLQA--GPSELVIANRDMAKALALRNELD---------------HSRLRIS-RYEALEGQSF  182 (272)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--CCSEEEEECSCHHHHHHHHHHHC---------------CTTEEEE-CSGGGTTCCC
T ss_pred             CEEEEECccHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHHhc---------------cCCeeEe-eHHHhcccCC
Confidence            4799999999999999999998  85 99999999999888764210               0123332 222311 689


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      |+||-|+|.....+      .+.+.         ...++++.+|++....|..|
T Consensus       183 DivInaTp~gm~~~------~~~i~---------~~~l~~~~~V~DlvY~P~~T  221 (272)
T 3pwz_A          183 DIVVNATSASLTAD------LPPLP---------ADVLGEAALAYELAYGKGLT  221 (272)
T ss_dssp             SEEEECSSGGGGTC------CCCCC---------GGGGTTCSEEEESSCSCCSC
T ss_pred             CEEEECCCCCCCCC------CCCCC---------HHHhCcCCEEEEeecCCCCC
Confidence            99999987543210      11110         12456788888877665444

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=96.45  E-value=0.0042  Score=53.83  Aligned_cols=108  Identities=16%  Similarity=0.133  Sum_probs=73.0

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      .++|+|+|+|-++      ++++..+++.|.+.|++|...||....+++                         .++...
T Consensus        13 p~~IavIGas~~~------g~~G~~~~~~L~~~G~~v~~vnp~~~g~~i-------------------------~G~~~~   61 (145)
T 2duw_A           13 TRTIALVGASDKP------DRPSYRVMKYLLDQGYHVIPVSPKVAGKTL-------------------------LGQQGY   61 (145)
T ss_dssp             CCCEEEESCCSCT------TSHHHHHHHHHHHHTCCEEEECSSSTTSEE-------------------------TTEECC
T ss_pred             CCEEEEECcCCCC------CChHHHHHHHHHHCCCEEEEeCCccccccc-------------------------CCeecc
Confidence            5789999998766      468899999999999999999997521111                         134455


Q ss_pred             cCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH---HHhhcCcEEEEe
Q 011654          404 WDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE---KLREIGFIVYSI  465 (480)
Q Consensus       404 ~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~~~~~g~~y~~i  465 (480)
                      .|+.+..+..|++++++.-+.-.++ ..++.+. ....++++. +.+..+   ..++.|++|.|-
T Consensus        62 ~sl~el~~~~Dlvii~vp~~~v~~v-~~~~~~~-g~~~i~i~~-~~~~~~l~~~a~~~Gi~~igp  123 (145)
T 2duw_A           62 ATLADVPEKVDMVDVFRNSEAAWGV-AQEAIAI-GAKTLWLQL-GVINEQAAVLAREAGLSVVMD  123 (145)
T ss_dssp             SSTTTCSSCCSEEECCSCSTHHHHH-HHHHHHH-TCCEEECCT-TCCCHHHHHHHHTTTCEEECS
T ss_pred             CCHHHcCCCCCEEEEEeCHHHHHHH-HHHHHHc-CCCEEEEcC-ChHHHHHHHHHHHcCCEEEcC
Confidence            6777777789999999984332221 2334442 445577776 444543   345679999663

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=96.44  E-value=0.012  Score=57.91  Aligned_cols=100  Identities=9%  Similarity=0.143  Sum_probs=72.2

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC----CEEEEECCCCC--hHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDK----AKLSIYDPQVT--EDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g----~~V~~~DP~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      ..+|+|+|+..          ....++..|.+.|    .+|.+||+...  ..+....+                     
T Consensus        22 ~mkI~iIG~G~----------mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~---------------------   70 (322)
T 2izz_A           22 SMSVGFIGAGQ----------LAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKM---------------------   70 (322)
T ss_dssp             CCCEEEESCSH----------HHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHH---------------------
T ss_pred             CCEEEEECCCH----------HHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHc---------------------
Confidence            44899999854          8899999999999    79999998754  21111221                     


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHh
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLR  456 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~  456 (480)
                       ++....+..++++++|+|++++....+++. ...+...+++..+|+|..+-++.+.+.
T Consensus        71 -G~~~~~~~~e~~~~aDvVilav~~~~~~~v-l~~l~~~l~~~~ivvs~s~gi~~~~l~  127 (322)
T 2izz_A           71 -GVKLTPHNKETVQHSDVLFLAVKPHIIPFI-LDEIGADIEDRHIVVSCAAGVTISSIE  127 (322)
T ss_dssp             -TCEEESCHHHHHHHCSEEEECSCGGGHHHH-HHHHGGGCCTTCEEEECCTTCCHHHHH
T ss_pred             -CCEEeCChHHHhccCCEEEEEeCHHHHHHH-HHHHHhhcCCCCEEEEeCCCCCHHHHH
Confidence             355667888999999999999985544442 235555566566999998888765433

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=96.43  E-value=0.0097  Score=57.04  Aligned_cols=96  Identities=16%  Similarity=0.120  Sum_probs=68.8

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC--EEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA--KLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      ++|+|+|+..          .+..++..|.+.|.  +|.+||+.....+....++                  .  ....
T Consensus         2 ~~I~iIG~G~----------mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g------------------~--~~~~   51 (281)
T 2g5c_A            2 QNVLIVGVGF----------MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG------------------I--IDEG   51 (281)
T ss_dssp             CEEEEESCSH----------HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT------------------S--CSEE
T ss_pred             cEEEEEecCH----------HHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCC------------------C--cccc
Confidence            4799999855          88899999999998  9999999754332222221                  0  0013


Q ss_pred             ecCHHHhcc-cccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011654          403 VWDAYQAAK-DAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       403 ~~~~~~a~~-~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~  451 (480)
                      .+++.++++ ++|+|+++++.....++ ..++...+++..+|+|..+.-.
T Consensus        52 ~~~~~~~~~~~aDvVilavp~~~~~~v-~~~l~~~l~~~~iv~~~~~~~~  100 (281)
T 2g5c_A           52 TTSIAKVEDFSPDFVMLSSPVRTFREI-AKKLSYILSEDATVTDQGSVKG  100 (281)
T ss_dssp             ESCGGGGGGTCCSEEEECSCHHHHHHH-HHHHHHHSCTTCEEEECCSCCT
T ss_pred             cCCHHHHhcCCCCEEEEcCCHHHHHHH-HHHHHhhCCCCcEEEECCCCcH
Confidence            457778899 99999999988765542 2456667777779999887654

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=96.42  E-value=0.011  Score=56.94  Aligned_cols=53  Identities=28%  Similarity=0.470  Sum_probs=44.7

Q ss_pred             cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .++.|||.|. +|.++|..|...  |.+|+++++.                                 +.++.+.+++||
T Consensus       160 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~hs~---------------------------------t~~L~~~~~~AD  204 (288)
T 1b0a_A          160 LNAVVIGASNIVGRPMSMELLLA--GCTTTVTHRF---------------------------------TKNLRHHVENAD  204 (288)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTT--TCEEEEECSS---------------------------------CSCHHHHHHHCS
T ss_pred             CEEEEECCChHHHHHHHHHHHHC--CCeEEEEeCC---------------------------------chhHHHHhccCC
Confidence            4799999996 799999999988  8999999742                                 245667789999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||.+++.|
T Consensus       205 IVI~Avg~p  213 (288)
T 1b0a_A          205 LLIVAVGKP  213 (288)
T ss_dssp             EEEECSCCT
T ss_pred             EEEECCCCc
Confidence            999999876

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.40  E-value=0.0065  Score=57.56  Aligned_cols=33  Identities=15%  Similarity=0.362  Sum_probs=30.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~   36 (480)
                      .+|.|||+|.+|..+|..|+..  |. +++++|.+.
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~--Gv~~i~lvD~d~   65 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASA--GVGNLTLLDFDT   65 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCSEEEEECCCB
T ss_pred             CeEEEEeeCHHHHHHHHHHHHc--CCCeEEEEcCCC
Confidence            4899999999999999999998  76 899999986

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=96.39  E-value=0.0082  Score=62.42  Aligned_cols=114  Identities=10%  Similarity=0.151  Sum_probs=78.5

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      ..+|+|+|+..          ....++..|.+.|.+|.+||+.....+......        +          ..++...
T Consensus         5 ~~~IgvIG~G~----------mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~--------~----------~~gi~~~   56 (474)
T 2iz1_A            5 QANFGVVGMAV----------MGKNLALNVESRGYTVAIYNRTTSKTEEVFKEH--------Q----------DKNLVFT   56 (474)
T ss_dssp             TBSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT--------T----------TSCEEEC
T ss_pred             CCcEEEEeeHH----------HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhC--------c----------CCCeEEe
Confidence            45899999855          889999999999999999998644322111100        0          0246667


Q ss_pred             cCHHHhccc---ccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCCCChH--H----HhhcCcEEEEec
Q 011654          404 WDAYQAAKD---AHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNILDVE--K----LREIGFIVYSIG  466 (480)
Q Consensus       404 ~~~~~a~~~---ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~--~----~~~~g~~y~~iG  466 (480)
                      .++++++++   +|+|+++++.+ ..++ -.+.+...+++..+|||+.+.....  +    +.+.|+.|.+.+
T Consensus        57 ~s~~e~v~~l~~aDvVilavp~~~~v~~-vl~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~p  128 (474)
T 2iz1_A           57 KTLEEFVGSLEKPRRIMLMVQAGAATDA-TIKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTG  128 (474)
T ss_dssp             SSHHHHHHTBCSSCEEEECCCTTHHHHH-HHHHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEE
T ss_pred             CCHHHHHhhccCCCEEEEEccCchHHHH-HHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCC
Confidence            889888776   99999999985 3443 2345666776667999999887432  1    223477776654

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.38  E-value=0.035  Score=56.48  Aligned_cols=118  Identities=11%  Similarity=0.115  Sum_probs=78.6

Q ss_pred             HHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCC
Q 011654          313 RIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPM  392 (480)
Q Consensus       313 ~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (480)
                      -+.+..+..+.+++|+|+|..-          -...+++.|+..|++|.++|+..........                 
T Consensus       209 gi~rat~~~L~GktV~ViG~G~----------IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~-----------------  261 (435)
T 3gvp_A          209 GLKRTTDMMFGGKQVVVCGYGE----------VGKGCCAALKAMGSIVYVTEIDPICALQACM-----------------  261 (435)
T ss_dssp             HHHHHHCCCCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHH-----------------
T ss_pred             HHHHhhCceecCCEEEEEeeCH----------HHHHHHHHHHHCCCEEEEEeCChhhhHHHHH-----------------
Confidence            3344445567999999999854          7889999999999999999975321111111                 


Q ss_pred             CCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC---CChHHHhhcCcEEEEec
Q 011654          393 SPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI---LDVEKLREIGFIVYSIG  466 (480)
Q Consensus       393 ~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~~g~~y~~iG  466 (480)
                           .+.. ..+++++++++|+++.++..+..  ++.+. .+.|++.++|++.-+-   ++.+.+...++.+..+.
T Consensus       262 -----~G~~-v~~Leeal~~ADIVi~atgt~~l--I~~e~-l~~MK~gailINvgrg~~EId~~~L~~~~~~~~~ir  329 (435)
T 3gvp_A          262 -----DGFR-LVKLNEVIRQVDIVITCTGNKNV--VTREH-LDRMKNSCIVCNMGHSNTEIDVASLRTPELTWERVR  329 (435)
T ss_dssp             -----TTCE-ECCHHHHTTTCSEEEECSSCSCS--BCHHH-HHHSCTTEEEEECSSTTTTBTGGGGCSTTCEEEEEE
T ss_pred             -----cCCE-eccHHHHHhcCCEEEECCCCccc--CCHHH-HHhcCCCcEEEEecCCCccCCHHHHHhhcceeEEEE
Confidence                 1122 24789999999999997654432  44444 5678888899998553   33344444466666654

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=96.38  E-value=0.011  Score=60.46  Aligned_cols=111  Identities=15%  Similarity=0.057  Sum_probs=70.8

Q ss_pred             CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCC--CCCC-CCCCCC
Q 011654          322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIH--LQPM-SPPASK  398 (480)
Q Consensus       322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~  398 (480)
                      .+-.+|+|+|+.|          ..+.++..|.+ |.+|.+||......+....   .    ..|+.  ..+. ......
T Consensus        34 ~~~mkIaVIGlG~----------mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~---g----~~~i~e~~l~~ll~~~~~   95 (432)
T 3pid_A           34 SEFMKITISGTGY----------VGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQ---K----ISPIVDKEIQEYLAEKPL   95 (432)
T ss_dssp             -CCCEEEEECCSH----------HHHHHHHHHHT-TSEEEEECSCHHHHHHHHT---T----CCSSCCHHHHHHHHHSCC
T ss_pred             cCCCEEEEECcCH----------HHHHHHHHHHc-CCeEEEEecCHHHhhHHhc---c----CCccccccHHHHHhhccC
Confidence            3556999999988          88999998887 9999999986443222111   0    00100  0000 000013


Q ss_pred             ceeeecCHHHhcccccEEEEEeccccc---cccc-------HHHHHHhcCCCCEEEEcCCCCC
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDEF---KTLD-------YQKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~---~~~~-------~~~~~~~~~~~~~i~D~~~~~~  451 (480)
                      ++..++++++++++||+|+++++-+.=   ...|       .+.+.. +++..+|||...+..
T Consensus        96 ~l~~ttd~~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~p  157 (432)
T 3pid_A           96 NFRATTDKHDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPV  157 (432)
T ss_dssp             CEEEESCHHHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCT
T ss_pred             CeEEEcCHHHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCCh
Confidence            577888999999999999999877621   0122       245666 777779999776654

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=96.37  E-value=0.009  Score=57.81  Aligned_cols=109  Identities=12%  Similarity=0.099  Sum_probs=74.4

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      ..+|+|+|+..          .+..+++.|.+.|.+|.+||+.....+   .+.                   ..++...
T Consensus         4 ~~~i~iiG~G~----------~G~~~a~~l~~~g~~V~~~~~~~~~~~---~~~-------------------~~g~~~~   51 (301)
T 3cky_A            4 SIKIGFIGLGA----------MGKPMAINLLKEGVTVYAFDLMEANVA---AVV-------------------AQGAQAC   51 (301)
T ss_dssp             CCEEEEECCCT----------THHHHHHHHHHTTCEEEEECSSHHHHH---HHH-------------------TTTCEEC
T ss_pred             CCEEEEECccH----------HHHHHHHHHHHCCCeEEEEeCCHHHHH---HHH-------------------HCCCeec
Confidence            35899999854          788999999999999999998643221   111                   0134566


Q ss_pred             cCHHHhcccccEEEEEecccc-cccccH--HHHHHhcCCCCEEEEcCCCCC--hHHH----hhcCcEEEE
Q 011654          404 WDAYQAAKDAHGVCILTEWDE-FKTLDY--QKIFDNMRKPAYIFDGRNILD--VEKL----REIGFIVYS  464 (480)
Q Consensus       404 ~~~~~a~~~ad~vvi~t~h~~-~~~~~~--~~~~~~~~~~~~i~D~~~~~~--~~~~----~~~g~~y~~  464 (480)
                      ++++++++++|+|++++..+. .+..-.  +.+...+++..+|+|..+...  .+.+    .+.|+.|..
T Consensus        52 ~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~g~~~~~  121 (301)
T 3cky_A           52 ENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVD  121 (301)
T ss_dssp             SSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEE
Confidence            788999999999999996544 333211  145556666679999988873  2222    234777754

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=96.37  E-value=0.017  Score=59.73  Aligned_cols=103  Identities=15%  Similarity=0.071  Sum_probs=73.5

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +..+.+++|+|+|+.-          -...+++.|...|++|.+|||..........                      .
T Consensus       252 ~~~l~GktVgIIG~G~----------IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~----------------------~  299 (479)
T 1v8b_A          252 DFLISGKIVVICGYGD----------VGKGCASSMKGLGARVYITEIDPICAIQAVM----------------------E  299 (479)
T ss_dssp             CCCCTTSEEEEECCSH----------HHHHHHHHHHHHTCEEEEECSCHHHHHHHHT----------------------T
T ss_pred             ccccCCCEEEEEeeCH----------HHHHHHHHHHhCcCEEEEEeCChhhHHHHHH----------------------c
Confidence            4468999999999743          6788999999999999999998654211111                      1


Q ss_pred             ceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC---CChHHHhh
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI---LDVEKLRE  457 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~~  457 (480)
                      ++. ..+++++++.+|+|++++.-..+  ++- +..+.|++.++|+|+.+.   ++.+.+.+
T Consensus       300 g~~-~~~l~ell~~aDiVi~~~~t~~l--I~~-~~l~~MK~gailiNvgrg~~EId~~aL~~  357 (479)
T 1v8b_A          300 GFN-VVTLDEIVDKGDFFITCTGNVDV--IKL-EHLLKMKNNAVVGNIGHFDDEIQVNELFN  357 (479)
T ss_dssp             TCE-ECCHHHHTTTCSEEEECCSSSSS--BCH-HHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             CCE-ecCHHHHHhcCCEEEECCChhhh--cCH-HHHhhcCCCcEEEEeCCCCccccchhhhc
Confidence            222 24789999999999999743332  443 455789988899998764   45555544

>3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp}

Probab=96.32  E-value=0.0035  Score=60.13  Aligned_cols=74  Identities=11%  Similarity=0.087  Sum_probs=50.1

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||.|.| .|.+|..++..|++. +|++|++.++++++.+.+......+..            +.+.-..++.++++++|
T Consensus         1 M~ilVtGatG~iG~~l~~~L~~~-~g~~V~~~~R~~~~~~~~~~~~v~~~~------------~D~~d~~~l~~~~~~~d   67 (289)
T 3e48_A            1 MNIMLTGATGHLGTHITNQAIAN-HIDHFHIGVRNVEKVPDDWRGKVSVRQ------------LDYFNQESMVEAFKGMD   67 (289)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHT-TCTTEEEEESSGGGSCGGGBTTBEEEE------------CCTTCHHHHHHHTTTCS
T ss_pred             CEEEEEcCCchHHHHHHHHHhhC-CCCcEEEEECCHHHHHHhhhCCCEEEE------------cCCCCHHHHHHHHhCCC
Confidence            7899999 599999999999875 379999999998765544332111100            11111123455678999


Q ss_pred             EEEEeccC
Q 011654           81 IVFVSVNT   88 (480)
Q Consensus        81 vVii~Vpt   88 (480)
                      +||.|.+.
T Consensus        68 ~vi~~a~~   75 (289)
T 3e48_A           68 TVVFIPSI   75 (289)
T ss_dssp             EEEECCCC
T ss_pred             EEEEeCCC
Confidence            99998753

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=96.31  E-value=0.008  Score=61.76  Aligned_cols=66  Identities=27%  Similarity=0.353  Sum_probs=48.2

Q ss_pred             EEEEEcCChhHHHHHHHHHHc--------CCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHH
Q 011654            3 KICCIGAGYVGGPTMAVIALK--------CPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIE   73 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~--------~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~   73 (480)
                      ||+|||+|.||..++..|.++        +++.+|. ++|+++++.+.+..                    ...+++|++
T Consensus        12 rIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~--------------------~~~~~~d~~   71 (444)
T 3mtj_A           12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAG--------------------GLPLTTNPF   71 (444)
T ss_dssp             EEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHT--------------------TCCEESCTH
T ss_pred             cEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcc--------------------cCcccCCHH
Confidence            799999999999998877531        2355654 57999887665532                    123577888


Q ss_pred             HHhc--cCcEEEEeccC
Q 011654           74 KHVA--EADIVFVSVNT   88 (480)
Q Consensus        74 ~a~~--~aDvVii~Vpt   88 (480)
                      +.+.  +.|+|++|+|+
T Consensus        72 ell~d~diDvVve~tp~   88 (444)
T 3mtj_A           72 DVVDDPEIDIVVELIGG   88 (444)
T ss_dssp             HHHTCTTCCEEEECCCS
T ss_pred             HHhcCCCCCEEEEcCCC
Confidence            8775  57999999875

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=96.30  E-value=0.016  Score=55.76  Aligned_cols=71  Identities=23%  Similarity=0.332  Sum_probs=54.4

Q ss_pred             cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .++.|||.|. +|.++|..|...  |.+|++.++.                                 |.++++.+++||
T Consensus       161 k~vvVvGrs~iVG~p~A~lL~~~--gAtVtv~h~~---------------------------------t~~L~~~~~~AD  205 (285)
T 3p2o_A          161 KDAVIIGASNIVGRPMATMLLNA--GATVSVCHIK---------------------------------TKDLSLYTRQAD  205 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSCHHHHHTTCS
T ss_pred             CEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCC---------------------------------chhHHHHhhcCC
Confidence            4799999876 799999999998  8899998752                                 235667789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +||.+++.|.-.         .           ...+++|.+||+..
T Consensus       206 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDVg  232 (285)
T 3p2o_A          206 LIIVAAGCVNLL---------R-----------SDMVKEGVIVVDVG  232 (285)
T ss_dssp             EEEECSSCTTCB---------C-----------GGGSCTTEEEEECC
T ss_pred             EEEECCCCCCcC---------C-----------HHHcCCCeEEEEec
Confidence            999999865211         1           13468899888643

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=96.29  E-value=0.017  Score=55.40  Aligned_cols=71  Identities=25%  Similarity=0.419  Sum_probs=54.3

Q ss_pred             cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .++.|||.|. +|.++|..|...  |.+|++.++.                                 |.++++.+++||
T Consensus       162 k~vvVIG~s~iVG~p~A~lL~~~--gAtVtv~hs~---------------------------------t~~L~~~~~~AD  206 (285)
T 3l07_A          162 AYAVVVGASNVVGKPVSQLLLNA--KATVTTCHRF---------------------------------TTDLKSHTTKAD  206 (285)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSSHHHHHTTCS
T ss_pred             CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCC---------------------------------chhHHHhcccCC
Confidence            4799999876 799999999998  8899998742                                 235667789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +||.+++.|.-.         .           ...+++|.+||+.+
T Consensus       207 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDvg  233 (285)
T 3l07_A          207 ILIVAVGKPNFI---------T-----------ADMVKEGAVVIDVG  233 (285)
T ss_dssp             EEEECCCCTTCB---------C-----------GGGSCTTCEEEECC
T ss_pred             EEEECCCCCCCC---------C-----------HHHcCCCcEEEEec
Confidence            999999865211         1           13468899888644

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=96.29  E-value=0.015  Score=60.66  Aligned_cols=114  Identities=13%  Similarity=0.142  Sum_probs=78.9

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      .+|+|+|+..          ....++..|.+.|.+|.+||......+....-.       ++        +  .++....
T Consensus         3 m~IgvIG~G~----------mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~-------~~--------g--~gi~~~~   55 (482)
T 2pgd_A            3 ADIALIGLAV----------MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANE-------AK--------G--TKVLGAH   55 (482)
T ss_dssp             BSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTT-------TT--------T--SSCEECS
T ss_pred             CeEEEEChHH----------HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcc-------cc--------C--CCeEEeC
Confidence            4799999865          889999999999999999998654322211100       00        0  2455667


Q ss_pred             CHHHhcc---cccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEec
Q 011654          405 DAYQAAK---DAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIG  466 (480)
Q Consensus       405 ~~~~a~~---~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG  466 (480)
                      +++++++   ++|+|+++++.+ ..++ -.+.+...+++..+|||+.+.....      .+.+.|+.|.+.+
T Consensus        56 ~~~e~v~~l~~aDvVilaVp~~~~v~~-vl~~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~p  126 (482)
T 2pgd_A           56 SLEEMVSKLKKPRRIILLVKAGQAVDN-FIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSG  126 (482)
T ss_dssp             SHHHHHHHBCSSCEEEECSCTTHHHHH-HHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CHHHHHhhccCCCEEEEeCCChHHHHH-HHHHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCC
Confidence            8888764   899999999986 4444 2356777777667999998887532      1234577777654

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=96.28  E-value=0.018  Score=55.33  Aligned_cols=72  Identities=25%  Similarity=0.382  Sum_probs=54.7

Q ss_pred             cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .++.|||.|. +|.++|..|+..  |.+|++..+.                                 |.++++.+++||
T Consensus       162 k~vvVvGrs~iVG~plA~lL~~~--gAtVtv~hs~---------------------------------T~~L~~~~~~AD  206 (286)
T 4a5o_A          162 MDAVVVGASNIVGRPMALELLLG--GCTVTVTHRF---------------------------------TRDLADHVSRAD  206 (286)
T ss_dssp             CEEEEECTTSTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSCHHHHHHTCS
T ss_pred             CEEEEECCCchhHHHHHHHHHHC--CCeEEEEeCC---------------------------------CcCHHHHhccCC
Confidence            4799999875 899999999998  8899998641                                 235667789999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      +||.+++.|.-.         .           ...+++|.+||+.+.
T Consensus       207 IVI~Avg~p~~I---------~-----------~~~vk~GavVIDvgi  234 (286)
T 4a5o_A          207 LVVVAAGKPGLV---------K-----------GEWIKEGAIVIDVGI  234 (286)
T ss_dssp             EEEECCCCTTCB---------C-----------GGGSCTTCEEEECCS
T ss_pred             EEEECCCCCCCC---------C-----------HHHcCCCeEEEEecc
Confidence            999999866211         1           134688999987543

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=96.25  E-value=0.017  Score=57.25  Aligned_cols=41  Identities=22%  Similarity=0.243  Sum_probs=31.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eC--CHHHHHHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVV-DI--SVSRIAAWN   43 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~--~~~~v~~l~   43 (480)
                      +||+|+|+|++|.-++..|..+ ++.+|+.+ |.  +++....+.
T Consensus         4 ikVgI~G~GrIGr~l~R~l~~~-p~vevvaI~d~~~~~~~~~~ll   47 (337)
T 3e5r_O            4 IKIGINGFGRIGRLVARVALQS-EDVELVAVNDPFITTDYMTYMF   47 (337)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC-SSEEEEEEECSSSCHHHHHHHH
T ss_pred             eEEEEECcCHHHHHHHHHHhCC-CCeEEEEEECCCCCHHHHHHhh
Confidence            4999999999999999998875 57787765 42  566555553

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.23  E-value=0.001  Score=61.51  Aligned_cols=68  Identities=13%  Similarity=0.220  Sum_probs=46.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-cC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-EA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-~a   79 (480)
                      ++|+|||+|.+|..++..+.... |++++ ++|.|+++......+ .                 .+...+++++.++ +.
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~g-v-----------------~V~~~~dl~ell~~~I  141 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRG-G-----------------VIEHVDLLPQRVPGRI  141 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETT-E-----------------EEEEGGGHHHHSTTTC
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcC-C-----------------eeecHHhHHHHHHcCC
Confidence            58999999999999998643333 67755 579988765432221 0                 1223567777654 58


Q ss_pred             cEEEEeccC
Q 011654           80 DIVFVSVNT   88 (480)
Q Consensus        80 DvVii~Vpt   88 (480)
                      |+|++|+|+
T Consensus       142 D~ViIA~Ps  150 (211)
T 2dt5_A          142 EIALLTVPR  150 (211)
T ss_dssp             CEEEECSCH
T ss_pred             CEEEEeCCc
Confidence            999999885

>3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus}

Probab=96.19  E-value=0.0073  Score=58.55  Aligned_cols=70  Identities=21%  Similarity=0.267  Sum_probs=48.4

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      +|+|.|.| .|++|..++..|.++  |++|+++++++...+ +. + ..+            ..+.+. ..++.++++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~-~~-~-~~~------------~~~Dl~-~~~~~~~~~~~   63 (311)
T 3m2p_A            2 SLKIAVTGGTGFLGQYVVESIKND--GNTPIILTRSIGNKA-IN-D-YEY------------RVSDYT-LEDLINQLNDV   63 (311)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCC-------C-CEE------------EECCCC-HHHHHHHTTTC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHhC--CCEEEEEeCCCCccc-CC-c-eEE------------EEcccc-HHHHHHhhcCC
Confidence            37899999 699999999999998  999999999854433 32 1 110            012333 34556677899


Q ss_pred             cEEEEeccC
Q 011654           80 DIVFVSVNT   88 (480)
Q Consensus        80 DvVii~Vpt   88 (480)
                      |+||-|...
T Consensus        64 d~Vih~a~~   72 (311)
T 3m2p_A           64 DAVVHLAAT   72 (311)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEcccc
Confidence            999998753

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=96.16  E-value=0.042  Score=56.08  Aligned_cols=103  Identities=15%  Similarity=0.102  Sum_probs=70.9

Q ss_pred             HHHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCC
Q 011654          310 FVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHL  389 (480)
Q Consensus       310 ~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~  389 (480)
                      ++.-+.+..+..+.+++|+|+|..-          -...+++.|...|++|.+||+..........              
T Consensus       233 lvdgI~Ratg~~L~GKTVgVIG~G~----------IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~--------------  288 (464)
T 3n58_A          233 LVDGIRRGTDVMMAGKVAVVCGYGD----------VGKGSAQSLAGAGARVKVTEVDPICALQAAM--------------  288 (464)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSHHHHHHHHH--------------
T ss_pred             HHHHHHHhcCCcccCCEEEEECcCH----------HHHHHHHHHHHCCCEEEEEeCCcchhhHHHh--------------
Confidence            3344445455678999999999743          6788999999999999999763221111111              


Q ss_pred             CCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC
Q 011654          390 QPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN  448 (480)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~  448 (480)
                              .++.+ .+++++++.+|+|+..+..+..  ++- +..+.|++.++|+++-+
T Consensus       289 --------~G~~v-v~LeElL~~ADIVv~atgt~~l--I~~-e~l~~MK~GAILINvGR  335 (464)
T 3n58_A          289 --------DGFEV-VTLDDAASTADIVVTTTGNKDV--ITI-DHMRKMKDMCIVGNIGH  335 (464)
T ss_dssp             --------TTCEE-CCHHHHGGGCSEEEECCSSSSS--BCH-HHHHHSCTTEEEEECSS
T ss_pred             --------cCcee-ccHHHHHhhCCEEEECCCCccc--cCH-HHHhcCCCCeEEEEcCC
Confidence                    12233 4789999999999998765432  344 44578898889988755

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=96.16  E-value=0.011  Score=57.11  Aligned_cols=94  Identities=18%  Similarity=0.216  Sum_probs=63.6

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      +|+|+|+..          .+..++..|.+.|.+|.+||+.....+....                      .++...++
T Consensus         2 ~i~iiG~G~----------mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~----------------------~g~~~~~~   49 (296)
T 2gf2_A            2 PVGFIGLGN----------MGNPMAKNLMKHGYPLIIYDVFPDACKEFQD----------------------AGEQVVSS   49 (296)
T ss_dssp             CEEEECCST----------THHHHHHHHHHTTCCEEEECSSTHHHHHHHT----------------------TTCEECSS
T ss_pred             eEEEEeccH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----------------------cCCeecCC
Confidence            699999855          7889999999999999999986543222111                      23556678


Q ss_pred             HHHhcccccEEEEEecccc-cccccHHH---HHHhcCCCCEEEEcCCCCChH
Q 011654          406 AYQAAKDAHGVCILTEWDE-FKTLDYQK---IFDNMRKPAYIFDGRNILDVE  453 (480)
Q Consensus       406 ~~~a~~~ad~vvi~t~h~~-~~~~~~~~---~~~~~~~~~~i~D~~~~~~~~  453 (480)
                      +.++++++|+|++++..+. .++. ...   +...+++..+|+|..+ +++.
T Consensus        50 ~~~~~~~~Dvvi~~vp~~~~~~~v-~~~~~~~~~~l~~~~~vv~~s~-~~~~   99 (296)
T 2gf2_A           50 PADVAEKADRIITMLPTSINAIEA-YSGANGILKKVKKGSLLIDSST-IDPA   99 (296)
T ss_dssp             HHHHHHHCSEEEECCSSHHHHHHH-HHSTTSGGGTCCTTCEEEECSC-CCHH
T ss_pred             HHHHHhcCCEEEEeCCCHHHHHHH-HhCchhHHhcCCCCCEEEECCC-CCHH
Confidence            8999999999999986543 3221 111   2224555669999544 4443

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=96.06  E-value=0.0092  Score=57.60  Aligned_cols=66  Identities=9%  Similarity=0.176  Sum_probs=50.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .++.|+|+|-+|.+++..|++.  |. +|++++|++++.+.+.+..                  .....+++.+ + ++|
T Consensus       123 k~vlvlGaGGaaraia~~L~~~--G~~~v~v~nRt~~ka~~La~~~------------------~~~~~~~l~~-l-~~D  180 (282)
T 3fbt_A          123 NICVVLGSGGAARAVLQYLKDN--FAKDIYVVTRNPEKTSEIYGEF------------------KVISYDELSN-L-KGD  180 (282)
T ss_dssp             SEEEEECSSTTHHHHHHHHHHT--TCSEEEEEESCHHHHHHHCTTS------------------EEEEHHHHTT-C-CCS
T ss_pred             CEEEEECCcHHHHHHHHHHHHc--CCCEEEEEeCCHHHHHHHHHhc------------------CcccHHHHHh-c-cCC
Confidence            4799999999999999999998  87 8999999999998887531                  0111122333 4 799


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||-|+|..
T Consensus       181 ivInaTp~G  189 (282)
T 3fbt_A          181 VIINCTPKG  189 (282)
T ss_dssp             EEEECSSTT
T ss_pred             EEEECCccC
Confidence            999998754

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=96.06  E-value=0.0037  Score=62.75  Aligned_cols=33  Identities=21%  Similarity=0.255  Sum_probs=31.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      |||.|||+|..|+.+|..|+++  |++|+++|+++
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~--G~~v~v~Er~~   34 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKH--GIKVTIYERNS   34 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCCEEEEecCC
Confidence            8999999999999999999998  99999999864

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=96.05  E-value=0.02  Score=58.85  Aligned_cols=108  Identities=18%  Similarity=0.152  Sum_probs=69.2

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCC------CCc
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPA------SKQ  399 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  399 (480)
                      +|+|+|+.|          ....++..|.+.|.+|.++|......+.   +....    -|+. .+.....      ...
T Consensus         2 kI~VIG~G~----------vG~~~A~~la~~G~~V~~~d~~~~~~~~---l~~~~----~~i~-e~~l~~~~~~~~~~g~   63 (436)
T 1mv8_A            2 RISIFGLGY----------VGAVCAGCLSARGHEVIGVDVSSTKIDL---INQGK----SPIV-EPGLEALLQQGRQTGR   63 (436)
T ss_dssp             EEEEECCST----------THHHHHHHHHHTTCEEEEECSCHHHHHH---HHTTC----CSSC-CTTHHHHHHHHHHTTC
T ss_pred             EEEEECCCH----------HHHHHHHHHHHCCCEEEEEECCHHHHHH---HhCCC----CCcC-CCCHHHHHHhhcccCc
Confidence            799999988          8899999999999999999985433221   11100    0110 0000000      123


Q ss_pred             eeeecCHHHhcccccEEEEEecccc--ccccc-------HHHHHHhcCC---CCEEEEcCCCCC
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDE--FKTLD-------YQKIFDNMRK---PAYIFDGRNILD  451 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~--~~~~~-------~~~~~~~~~~---~~~i~D~~~~~~  451 (480)
                      +...+++.++++++|+|+++++-+.  ....|       .+.+...+++   ..+|++...+..
T Consensus        64 l~~t~~~~~~~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~  127 (436)
T 1mv8_A           64 LSGTTDFKKAVLDSDVSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLP  127 (436)
T ss_dssp             EEEESCHHHHHHTCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCT
T ss_pred             eEEeCCHHHHhccCCEEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCC
Confidence            6777889999999999999997654  11222       2455566666   678999866553

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=96.03  E-value=0.042  Score=53.27  Aligned_cols=104  Identities=15%  Similarity=0.152  Sum_probs=66.5

Q ss_pred             EEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--cC
Q 011654            3 KICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--EA   79 (480)
Q Consensus         3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~a   79 (480)
                      +|.|+|+ |.+|..++..+.+.  |++ .++++||.+.     +. .+              .++.+..+++++.+  ++
T Consensus        15 ~v~V~Gasg~~G~~~~~~l~~~--g~~-~V~~VnP~~~-----g~-~i--------------~G~~vy~sl~el~~~~~~   71 (294)
T 2yv1_A           15 KAIVQGITGRQGSFHTKKMLEC--GTK-IVGGVTPGKG-----GQ-NV--------------HGVPVFDTVKEAVKETDA   71 (294)
T ss_dssp             CEEEETTTSHHHHHHHHHHHHT--TCC-EEEEECTTCT-----TC-EE--------------TTEEEESSHHHHHHHHCC
T ss_pred             EEEEECCCCCHHHHHHHHHHhC--CCe-EEEEeCCCCC-----Cc-eE--------------CCEeeeCCHHHHhhcCCC
Confidence            5888898 99999999999887  888 6667765421     10 00              24677888888777  89


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~  145 (480)
                      |++++++|.+               ...+++++..+. ....+|+..+.++....+++.+..++.+
T Consensus        72 Dv~ii~vp~~---------------~~~~~v~ea~~~-Gi~~vVi~t~G~~~~~~~~l~~~A~~~g  121 (294)
T 2yv1_A           72 NASVIFVPAP---------------FAKDAVFEAIDA-GIELIVVITEHIPVHDTMEFVNYAEDVG  121 (294)
T ss_dssp             CEEEECCCHH---------------HHHHHHHHHHHT-TCSEEEECCSCCCHHHHHHHHHHHHHHT
T ss_pred             CEEEEccCHH---------------HHHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence            9999998742               234445544442 2223444444454443456766666654

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=96.03  E-value=0.023  Score=53.62  Aligned_cols=96  Identities=16%  Similarity=0.154  Sum_probs=67.6

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHH-HhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQ-RDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      .+|+|+|+..          .+..+++.|.+.|.+|.+||+.....+.. ..+                      ++...
T Consensus         4 m~i~iiG~G~----------mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~----------------------g~~~~   51 (259)
T 2ahr_A            4 MKIGIIGVGK----------MASAIIKGLKQTPHELIISGSSLERSKEIAEQL----------------------ALPYA   51 (259)
T ss_dssp             CEEEEECCSH----------HHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH----------------------TCCBC
T ss_pred             cEEEEECCCH----------HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHc----------------------CCEee
Confidence            4899999855          78899999999999999999864322211 111                      23445


Q ss_pred             cCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhh
Q 011654          404 WDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLRE  457 (480)
Q Consensus       404 ~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~  457 (480)
                      .+..++++++|+|+++++....     ..+...+++..+|+|..+-++.+.+++
T Consensus        52 ~~~~~~~~~~D~Vi~~v~~~~~-----~~v~~~l~~~~~vv~~~~~~~~~~l~~  100 (259)
T 2ahr_A           52 MSHQDLIDQVDLVILGIKPQLF-----ETVLKPLHFKQPIISMAAGISLQRLAT  100 (259)
T ss_dssp             SSHHHHHHTCSEEEECSCGGGH-----HHHHTTSCCCSCEEECCTTCCHHHHHH
T ss_pred             CCHHHHHhcCCEEEEEeCcHhH-----HHHHHHhccCCEEEEeCCCCCHHHHHH
Confidence            6788889999999999984432     234444555568999987777665543

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=96.01  E-value=0.0068  Score=58.62  Aligned_cols=108  Identities=16%  Similarity=0.221  Sum_probs=66.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +++.|+|+|.+|.++|..|++.  | +|+++++++++.+.+.+.        +.........-.+.++ +..+.+.++|+
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~--G-~V~v~~r~~~~~~~l~~~--------~~~~~~~~~~~~~d~~-~~~~~~~~~Di  196 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKD--N-NIIIANRTVEKAEALAKE--------IAEKLNKKFGEEVKFS-GLDVDLDGVDI  196 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSS--S-EEEEECSSHHHHHHHHHH--------HHHHHTCCHHHHEEEE-CTTCCCTTCCE
T ss_pred             CEEEEECchHHHHHHHHHHHHC--C-CEEEEECCHHHHHHHHHH--------HhhhcccccceeEEEe-eHHHhhCCCCE
Confidence            4789999999999999999998  9 999999999888776531        0000000000012232 23344678999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      +|-|+|.....+       .+...+.     -...++++.+|++.++.|..|
T Consensus       197 lVn~ag~~~~~~-------~~~~~~~-----~~~~l~~~~~v~Dv~y~p~~t  236 (287)
T 1nvt_A          197 IINATPIGMYPN-------IDVEPIV-----KAEKLREDMVVMDLIYNPLET  236 (287)
T ss_dssp             EEECSCTTCTTC-------CSSCCSS-----CSTTCCSSSEEEECCCSSSSC
T ss_pred             EEECCCCCCCCC-------CCCCCCC-----CHHHcCCCCEEEEeeeCCccC
Confidence            999987643210       0000000     013456788899888765443

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=95.98  E-value=0.037  Score=53.21  Aligned_cols=102  Identities=13%  Similarity=0.148  Sum_probs=72.6

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC---EEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA---KLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~---~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      ..||+|+|..          +.+..++..|.+.|.   +|.+||+.....+....                     ..++
T Consensus         3 ~~~I~iIG~G----------~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~---------------------~~gi   51 (280)
T 3tri_A            3 TSNITFIGGG----------NMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKE---------------------KCGV   51 (280)
T ss_dssp             CSCEEEESCS----------HHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHH---------------------TTCC
T ss_pred             CCEEEEEccc----------HHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHH---------------------HcCC
Confidence            4689999974          488999999999998   99999997654322211                     0145


Q ss_pred             eeecCHHHhcccccEEEEEecccccccccHHHHHHh-cCCCCEEEEcCCCCChHHHhh
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDN-MRKPAYIFDGRNILDVEKLRE  457 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~-~~~~~~i~D~~~~~~~~~~~~  457 (480)
                      ....+..++++++|+|+++++...+++ -++++... +++..+|+..-+-+..+.+.+
T Consensus        52 ~~~~~~~~~~~~aDvVilav~p~~~~~-vl~~l~~~~l~~~~iiiS~~agi~~~~l~~  108 (280)
T 3tri_A           52 HTTQDNRQGALNADVVVLAVKPHQIKM-VCEELKDILSETKILVISLAVGVTTPLIEK  108 (280)
T ss_dssp             EEESCHHHHHSSCSEEEECSCGGGHHH-HHHHHHHHHHTTTCEEEECCTTCCHHHHHH
T ss_pred             EEeCChHHHHhcCCeEEEEeCHHHHHH-HHHHHHhhccCCCeEEEEecCCCCHHHHHH
Confidence            667789999999999999997655544 23456554 554448888777666665543

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=95.95  E-value=0.0085  Score=59.87  Aligned_cols=31  Identities=26%  Similarity=0.515  Sum_probs=26.6

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEe
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVD   33 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D   33 (480)
                      |||+|+| .|++|..++..|.++ +.++|+.+.
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~-p~~ev~~i~   40 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADH-PMFELTALA   40 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTC-SSEEEEEEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcC-CCCEEEEEE
Confidence            6999999 899999999999875 567888774

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=95.95  E-value=0.013  Score=55.25  Aligned_cols=100  Identities=14%  Similarity=0.169  Sum_probs=69.0

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC----EEEEECCCCChHHHH-HhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA----KLSIYDPQVTEDQIQ-RDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~----~V~~~DP~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      .||+|+|...          ....+++.|.+.|.    +|.+||+.-...+.. ..+                      +
T Consensus         3 ~~i~iIG~G~----------mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~----------------------g   50 (247)
T 3gt0_A            3 KQIGFIGCGN----------MGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKY----------------------G   50 (247)
T ss_dssp             CCEEEECCSH----------HHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHH----------------------C
T ss_pred             CeEEEECccH----------HHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHh----------------------C
Confidence            4799999855          88999999999998    999999964332221 111                      3


Q ss_pred             eeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhh
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLRE  457 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~  457 (480)
                      +....+..++++++|+|+++++...++++- +.+...+++..+|+..-+-+..+.+++
T Consensus        51 ~~~~~~~~e~~~~aDvVilav~~~~~~~v~-~~l~~~l~~~~~vvs~~~gi~~~~l~~  107 (247)
T 3gt0_A           51 LTTTTDNNEVAKNADILILSIKPDLYASII-NEIKEIIKNDAIIVTIAAGKSIESTEN  107 (247)
T ss_dssp             CEECSCHHHHHHHCSEEEECSCTTTHHHHC----CCSSCTTCEEEECSCCSCHHHHHH
T ss_pred             CEEeCChHHHHHhCCEEEEEeCHHHHHHHH-HHHHhhcCCCCEEEEecCCCCHHHHHH
Confidence            456778999999999999999655444322 345445555558887666666665543

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=95.90  E-value=0.0029  Score=62.02  Aligned_cols=73  Identities=19%  Similarity=0.192  Sum_probs=49.7

Q ss_pred             cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE-E--e--cCHHHH
Q 011654            2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF-F--S--TDIEKH   75 (480)
Q Consensus         2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~-~--t--~d~~~a   75 (480)
                      .++.|||.|. +|.++|..|...  |.+|+++|++..+.......   +..        .  ....+ +  +  .++++.
T Consensus       178 k~vvVIG~G~iVG~~~A~~L~~~--gAtVtv~nR~~~~l~~ra~~---la~--------~--~~~~t~~~~t~~~~L~e~  242 (320)
T 1edz_A          178 KKCIVINRSEIVGRPLAALLAND--GATVYSVDVNNIQKFTRGES---LKL--------N--KHHVEDLGEYSEDLLKKC  242 (320)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTT--SCEEEEECSSEEEEEESCCC---SSC--------C--CCEEEEEEECCHHHHHHH
T ss_pred             CEEEEECCCcchHHHHHHHHHHC--CCEEEEEeCchHHHHhHHHH---Hhh--------h--cccccccccccHhHHHHH
Confidence            4799999996 599999999988  88999999874322111110   000        0  00111 1  2  567888


Q ss_pred             hccCcEEEEeccCC
Q 011654           76 VAEADIVFVSVNTP   89 (480)
Q Consensus        76 ~~~aDvVii~Vptp   89 (480)
                      +.+||+||.+++.|
T Consensus       243 l~~ADIVIsAtg~p  256 (320)
T 1edz_A          243 SLDSDVVITGVPSE  256 (320)
T ss_dssp             HHHCSEEEECCCCT
T ss_pred             hccCCEEEECCCCC
Confidence            99999999999876

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=95.90  E-value=0.021  Score=54.50  Aligned_cols=92  Identities=13%  Similarity=0.074  Sum_probs=64.4

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      +|+|+|...          .+..++..|.+.|.+|.+||+.....+....++                  ..  ....++
T Consensus         2 ~i~iiG~G~----------~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g------------------~~--~~~~~~   51 (279)
T 2f1k_A            2 KIGVVGLGL----------IGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQ------------------LV--DEAGQD   51 (279)
T ss_dssp             EEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT------------------SC--SEEESC
T ss_pred             EEEEEcCcH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCC------------------CC--ccccCC
Confidence            799999754          788999999999999999998644322222111                  00  023467


Q ss_pred             HHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC
Q 011654          406 AYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI  449 (480)
Q Consensus       406 ~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~  449 (480)
                      ++++ +++|+|+++++.+...++ .+++...+++..+|+|..++
T Consensus        52 ~~~~-~~~D~vi~av~~~~~~~~-~~~l~~~~~~~~~vv~~~~~   93 (279)
T 2f1k_A           52 LSLL-QTAKIIFLCTPIQLILPT-LEKLIPHLSPTAIVTDVASV   93 (279)
T ss_dssp             GGGG-TTCSEEEECSCHHHHHHH-HHHHGGGSCTTCEEEECCSC
T ss_pred             HHHh-CCCCEEEEECCHHHHHHH-HHHHHhhCCCCCEEEECCCC
Confidence            7787 999999999997765442 34566667766799998553

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.89  E-value=0.024  Score=58.95  Aligned_cols=108  Identities=15%  Similarity=0.085  Sum_probs=71.0

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCC-C-----C
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPP-A-----S  397 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~  397 (480)
                      .-+|+|+|+.|          ..+.++..|.+.|.+|.+||..-...+....   ..    .|+. .+.... .     .
T Consensus         8 ~~~I~VIG~G~----------vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~---~~----~~i~-e~gl~~~l~~~~~~   69 (478)
T 2y0c_A            8 SMNLTIIGSGS----------VGLVTGACLADIGHDVFCLDVDQAKIDILNN---GG----VPIH-EPGLKEVIARNRSA   69 (478)
T ss_dssp             CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHT---TC----CSSC-CTTHHHHHHHHHHT
T ss_pred             CceEEEECcCH----------HHHHHHHHHHhCCCEEEEEECCHHHHHHHHC---CC----CCcC-CCCHHHHHHHhccc
Confidence            46999999998          8899999999999999999975332222111   00    0110 000000 0     1


Q ss_pred             CceeeecCHHHhcccccEEEEEeccc---------ccccccHHHHHHhcCCCCEEEEcCCC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWD---------EFKTLDYQKIFDNMRKPAYIFDGRNI  449 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~---------~~~~~~~~~~~~~~~~~~~i~D~~~~  449 (480)
                      .++..++++.++++++|+++++++-|         .+..--.+.+...+++..+|++...+
T Consensus        70 ~~l~~ttd~~~a~~~aDvviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~iVV~~STv  130 (478)
T 2y0c_A           70 GRLRFSTDIEAAVAHGDVQFIAVGTPPDEDGSADLQYVLAAARNIGRYMTGFKVIVDKSTV  130 (478)
T ss_dssp             TCEEEECCHHHHHHHCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECSCC
T ss_pred             CCEEEECCHHHHhhcCCEEEEEeCCCcccCCCccHHHHHHHHHHHHHhcCCCCEEEEeCCc
Confidence            24677889989999999999998875         22221224566677777789998754

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=95.89  E-value=0.051  Score=56.61  Aligned_cols=115  Identities=17%  Similarity=0.159  Sum_probs=67.7

Q ss_pred             CcEEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHHH-HHHHHCCCCCCCCCChHHHHHhhcCCCEEEe--cCHHHHh
Q 011654            1 MVKICCIGAGYVGGP-TMAVIALKCPKIEVAVVDISVSR-IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS--TDIEKHV   76 (480)
Q Consensus         1 imkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t--~d~~~a~   76 (480)
                      ++||.|||+|..|.+ +|..|.+.  |++|+++|..... .+.+.+.                   ++.+.  .+.+ .+
T Consensus        19 ~~~v~viGiG~sG~s~~A~~l~~~--G~~V~~~D~~~~~~~~~l~~~-------------------gi~~~~g~~~~-~~   76 (491)
T 2f00_A           19 VRHIHFVGIGGAGMGGIAEVLANE--GYQISGSDLAPNPVTQQLMNL-------------------GATIYFNHRPE-NV   76 (491)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHT--TCEEEEECSSCCHHHHHHHHT-------------------TCEEESSCCGG-GG
T ss_pred             CCEEEEEEcCHHHHHHHHHHHHhC--CCeEEEECCCCCHHHHHHHHC-------------------CCEEECCCCHH-Hc
Confidence            368999999999997 89999888  9999999986532 2333321                   12221  2232 35


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCCChHH-------HHHHHHHHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAADLTY-------WESAARMIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS  145 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~-------v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~  145 (480)
                      .++|+||+.-.-|.+        .+.+..       +....+.+...++...+|-+..|..-+||.. +..+|++.+
T Consensus        77 ~~a~~vv~s~~i~~~--------~p~~~~a~~~~ipvl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G  145 (491)
T 2f00_A           77 RDASVVVVSSAISAD--------NPEIVAAHEARIPVIRRAEMLAELMRFRHGIAIAGTHGKTTTTAMVSSIYAEAG  145 (491)
T ss_dssp             TTCSEEEECTTCCTT--------CHHHHHHHHTTCCEEEHHHHHHHHHTTSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEECCCCCCC--------CHHHHHHHHcCCcEEEHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            788988887332211        111100       0011122333344345777777887777665 677887653

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=95.89  E-value=0.0062  Score=60.66  Aligned_cols=32  Identities=28%  Similarity=0.537  Sum_probs=26.5

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      |||+|+| .|++|.-+...|.++ +..+++.+..
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~-p~~elv~v~s   37 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSH-PYLEVKQVTS   37 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTC-TTEEEEEEBC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcC-CCcEEEEEEC
Confidence            6899999 699999999999876 4668777654

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=95.87  E-value=0.013  Score=56.38  Aligned_cols=97  Identities=15%  Similarity=0.105  Sum_probs=68.1

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhC--CCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCcee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGD--KAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVN  401 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~--g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (480)
                      ..+|+|+|+..          .+..++..|.+.  |.+|.+||+.....+....++                  .  ...
T Consensus         6 ~~~I~iIG~G~----------mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g------------------~--~~~   55 (290)
T 3b1f_A            6 EKTIYIAGLGL----------IGASLALGIKRDHPHYKIVGYNRSDRSRDIALERG------------------I--VDE   55 (290)
T ss_dssp             CCEEEEECCSH----------HHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTT------------------S--CSE
T ss_pred             cceEEEEeeCH----------HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcC------------------C--ccc
Confidence            46899999865          788899999887  689999998643322221111                  0  002


Q ss_pred             eecCHHHhcccccEEEEEecccccccccHHHHHHh-cCCCCEEEEcCCCCC
Q 011654          402 VVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDN-MRKPAYIFDGRNILD  451 (480)
Q Consensus       402 ~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~-~~~~~~i~D~~~~~~  451 (480)
                      ...+++++++++|+|+++++.+..+++ .+++... +++..+|+|..+...
T Consensus        56 ~~~~~~~~~~~aDvVilavp~~~~~~v-~~~l~~~~l~~~~ivi~~~~~~~  105 (290)
T 3b1f_A           56 ATADFKVFAALADVIILAVPIKKTIDF-IKILADLDLKEDVIITDAGSTKY  105 (290)
T ss_dssp             EESCTTTTGGGCSEEEECSCHHHHHHH-HHHHHTSCCCTTCEEECCCSCHH
T ss_pred             ccCCHHHhhcCCCEEEEcCCHHHHHHH-HHHHHhcCCCCCCEEEECCCCch
Confidence            446777888999999999998776442 3456666 666679999887653

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=95.87  E-value=0.063  Score=56.40  Aligned_cols=115  Identities=12%  Similarity=0.019  Sum_probs=68.8

Q ss_pred             CcEEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCH--HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            1 MVKICCIGAGYVGGP-TMAVIALKCPKIEVAVVDISV--SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         1 imkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      +++|-|||.|-.|.+ +|..|.++  |++|+++|.++  ...+.|.+...                 .+..-.+.+....
T Consensus        19 ~~~i~~iGiGg~Gms~lA~~l~~~--G~~V~~sD~~~~~~~~~~L~~~gi-----------------~~~~G~~~~~~~~   79 (524)
T 3hn7_A           19 GMHIHILGICGTFMGSLALLARAL--GHTVTGSDANIYPPMSTQLEQAGV-----------------TIEEGYLIAHLQP   79 (524)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCCCTTHHHHHHHTTC-----------------EEEESCCGGGGCS
T ss_pred             CCEEEEEEecHhhHHHHHHHHHhC--CCEEEEECCCCCcHHHHHHHHCCC-----------------EEECCCCHHHcCC
Confidence            378999999999997 67777777  99999999863  23344443211                 1222233444235


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHH----------HHhhC-CCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARM----------IANVS-NSNKIVVEKSTVPVKTAEA-IEKILTHNS  145 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~----------i~~~l-~~~~iVi~~STv~~gt~~~-l~~~l~~~~  145 (480)
                      ++|+||++-.-|.           +...++.+.+.          +...+ +...+|.+..|..-.||.. +..+|++.+
T Consensus        80 ~~d~vV~Spgi~~-----------~~p~l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~~G  148 (524)
T 3hn7_A           80 APDLVVVGNAMKR-----------GMDVIEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHYAG  148 (524)
T ss_dssp             CCSEEEECTTCCT-----------TSHHHHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCcCC-----------CCHHHHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            7899988733322           22233433321          23323 3345777777887766665 567787653

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=95.85  E-value=0.15  Score=49.46  Aligned_cols=105  Identities=12%  Similarity=0.147  Sum_probs=66.0

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E   78 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~   78 (480)
                      .+|.|+|+ |.+|..++..+.+.  |++ .++.+||.+.     +. .+              .++.+..+++++.+  .
T Consensus        14 ~~vvV~Gasg~~G~~~~~~l~~~--g~~-~v~~VnP~~~-----g~-~i--------------~G~~vy~sl~el~~~~~   70 (297)
T 2yv2_A           14 TRVLVQGITGREGSFHAKAMLEY--GTK-VVAGVTPGKG-----GS-EV--------------HGVPVYDSVKEALAEHP   70 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCT-----TC-EE--------------TTEEEESSHHHHHHHCT
T ss_pred             CEEEEECCCCCHHHHHHHHHHhC--CCc-EEEEeCCCCC-----Cc-eE--------------CCEeeeCCHHHHhhcCC
Confidence            36888898 99999999999887  888 5566665421     10 00              24677888888665  4


Q ss_pred             -CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654           79 -ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        79 -aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~  145 (480)
                       +|++++++|.+.               ..+++++..+. .-..+|+..+.++....+++.+..++.+
T Consensus        71 ~~DvaIi~vp~~~---------------~~~~v~ea~~~-Gi~~vVi~t~G~~~~~~~~l~~~A~~~g  122 (297)
T 2yv2_A           71 EINTSIVFVPAPF---------------APDAVYEAVDA-GIRLVVVITEGIPVHDTMRFVNYARQKG  122 (297)
T ss_dssp             TCCEEEECCCGGG---------------HHHHHHHHHHT-TCSEEEECCCCCCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEecCHHH---------------HHHHHHHHHHC-CCCEEEEECCCCCHHHHHHHHHHHHHcC
Confidence             999999988532               24445544442 2223444444454433456766666654

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=95.83  E-value=0.017  Score=55.45  Aligned_cols=104  Identities=12%  Similarity=0.129  Sum_probs=70.0

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      +|+|+|+..          .+..++..|.+ |.+|.+||+.....+.....                      ++...+ 
T Consensus         3 ~i~iiG~G~----------~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~----------------------g~~~~~-   48 (289)
T 2cvz_A            3 KVAFIGLGA----------MGYPMAGHLAR-RFPTLVWNRTFEKALRHQEE----------------------FGSEAV-   48 (289)
T ss_dssp             CEEEECCST----------THHHHHHHHHT-TSCEEEECSSTHHHHHHHHH----------------------HCCEEC-
T ss_pred             eEEEEcccH----------HHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHC----------------------CCcccC-
Confidence            799999754          78899999999 99999999865432222211                      122333 


Q ss_pred             HHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCCCCCh--HH----HhhcCcEEEE
Q 011654          406 AYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRNILDV--EK----LREIGFIVYS  464 (480)
Q Consensus       406 ~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~~~~~--~~----~~~~g~~y~~  464 (480)
                      +.++++++|+|++++..+. .++ -.+.+...+++..+|+|..+....  +.    +.+.|..|.+
T Consensus        49 ~~~~~~~~D~vi~~v~~~~~~~~-v~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~~~~~  113 (289)
T 2cvz_A           49 PLERVAEARVIFTCLPTTREVYE-VAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLD  113 (289)
T ss_dssp             CGGGGGGCSEEEECCSSHHHHHH-HHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEE
T ss_pred             HHHHHhCCCEEEEeCCChHHHHH-HHHHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCEEEE
Confidence            6677889999999999875 443 224555566666799999876532  12    2234677754

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=95.83  E-value=0.052  Score=56.28  Aligned_cols=114  Identities=19%  Similarity=0.217  Sum_probs=67.2

Q ss_pred             CcEEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHHH-HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGAGYVGGP-TMAVIALKCPKIEVAVVDISVSR-IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      +++|.|||+|..|.+ +|..|.+.  |++|+++|..... .+.+.+...                 .+..-.+.+ .+.+
T Consensus        18 ~~~i~viG~G~sG~s~~A~~l~~~--G~~V~~~D~~~~~~~~~l~~~gi-----------------~~~~g~~~~-~~~~   77 (475)
T 1p3d_A           18 VQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQAGA-----------------KIYIGHAEE-HIEG   77 (475)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHHTTC-----------------EEEESCCGG-GGTT
T ss_pred             CCEEEEEeecHHHHHHHHHHHHhC--CCEEEEECCCCCHHHHHHHhCCC-----------------EEECCCCHH-HcCC
Confidence            368999999999997 99999888  9999999986532 223332111                 111112333 3678


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHH----------HHHHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESA----------ARMIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS  145 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~----------~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~  145 (480)
                      +|+||+.-.-|.+        .+   .+..+          .+.+...++...+|-+..|..-+||.. +..+|++.+
T Consensus        78 a~~vv~s~~i~~~--------~~---~~~~a~~~~i~vl~~~~~l~~~~~~~~vI~VTGTnGKTTTt~ml~~iL~~~G  144 (475)
T 1p3d_A           78 ASVVVVSSAIKDD--------NP---ELVTSKQKRIPVIQRAQMLAEIMRFRHGIAVAGTHGKTTTTAMISMIYTQAK  144 (475)
T ss_dssp             CSEEEECTTSCTT--------CH---HHHHHHHTTCCEEEHHHHHHHHHHTSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred             CCEEEECCCCCCC--------CH---HHHHHHHcCCcEEEHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            9988887332211        01   11111          112223333335777777887777665 677887653

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=95.83  E-value=0.013  Score=56.58  Aligned_cols=74  Identities=16%  Similarity=0.170  Sum_probs=48.9

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCC------HHHHHHH---HCCCCCCCCCChHHHHHhhcCCCEEEec
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDIS------VSRIAAW---NGDQLPIYEPGLEDVVTQCRGRNLFFST   70 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~------~~~v~~l---~~~~~~~~e~~l~~l~~~~~~~~l~~t~   70 (480)
                      ||+|.|.|+ |.+|..++..|++.  |++|++++|+      +++.+.+   ......+..            +.+.-..
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~------------~D~~d~~   69 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASLDL--GHPTFLLVRESTASSNSEKAQLLESFKASGANIVH------------GSIDDHA   69 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEEC------------CCTTCHH
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC--CCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEE------------eccCCHH
Confidence            468999996 99999999999998  8999999997      4444322   221111111            1111112


Q ss_pred             CHHHHhccCcEEEEeccC
Q 011654           71 DIEKHVAEADIVFVSVNT   88 (480)
Q Consensus        71 d~~~a~~~aDvVii~Vpt   88 (480)
                      ++.++++++|+||.|.+.
T Consensus        70 ~l~~~~~~~d~vi~~a~~   87 (308)
T 1qyc_A           70 SLVEAVKNVDVVISTVGS   87 (308)
T ss_dssp             HHHHHHHTCSEEEECCCG
T ss_pred             HHHHHHcCCCEEEECCcc
Confidence            345567889999998753

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=95.83  E-value=0.014  Score=57.00  Aligned_cols=95  Identities=12%  Similarity=0.126  Sum_probs=66.0

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      ..+|+|+|+..          .+..++..|.+.|.+|.+||+.....+...+                      .++...
T Consensus        30 ~~~I~iIG~G~----------mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~----------------------~g~~~~   77 (316)
T 2uyy_A           30 DKKIGFLGLGL----------MGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQ----------------------EGARLG   77 (316)
T ss_dssp             SSCEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSGGGGHHHHH----------------------TTCEEC
T ss_pred             CCeEEEEcccH----------HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHH----------------------cCCEEc
Confidence            36899999855          7889999999999999999986543322221                      123456


Q ss_pred             cCHHHhcccccEEEEEecccc-cccccHH--HHHHhcCCCCEEEEcCCCC
Q 011654          404 WDAYQAAKDAHGVCILTEWDE-FKTLDYQ--KIFDNMRKPAYIFDGRNIL  450 (480)
Q Consensus       404 ~~~~~a~~~ad~vvi~t~h~~-~~~~~~~--~~~~~~~~~~~i~D~~~~~  450 (480)
                      .+.+++++++|+|++++..+. .++.-.+  .+...+++..+|+|+.+..
T Consensus        78 ~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~  127 (316)
T 2uyy_A           78 RTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVD  127 (316)
T ss_dssp             SCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCC
T ss_pred             CCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEEEECCCCC
Confidence            688899999999999998543 3221000  1124456667999999865

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=95.83  E-value=0.031  Score=55.81  Aligned_cols=110  Identities=13%  Similarity=0.055  Sum_probs=74.6

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      ..||+|+|...          ....++..|.+.|.+|.+||......+.....+....|    .|..    ....++...
T Consensus        29 ~mkI~VIGaG~----------mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~----l~g~----~l~~~i~~t   90 (356)
T 3k96_A           29 KHPIAILGAGS----------WGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRY----LPNY----PFPETLKAY   90 (356)
T ss_dssp             CSCEEEECCSH----------HHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTT----BTTC----CCCTTEEEE
T ss_pred             CCeEEEECccH----------HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCccc----CCCC----ccCCCeEEE
Confidence            45899999854          88999999999999999999853322211111100000    0111    123457778


Q ss_pred             cCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011654          404 WDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDV  452 (480)
Q Consensus       404 ~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~  452 (480)
                      +++.++++++|+|+++++....++ -.+++...+++..+|++..+=+++
T Consensus        91 ~d~~ea~~~aDvVilaVp~~~~~~-vl~~i~~~l~~~~ivvs~~kGi~~  138 (356)
T 3k96_A           91 CDLKASLEGVTDILIVVPSFAFHE-VITRMKPLIDAKTRIAWGTKGLAK  138 (356)
T ss_dssp             SCHHHHHTTCCEEEECCCHHHHHH-HHHHHGGGCCTTCEEEECCCSCBT
T ss_pred             CCHHHHHhcCCEEEECCCHHHHHH-HHHHHHHhcCCCCEEEEEeCCCCc
Confidence            899999999999999998876554 235666667666789998875554

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=95.82  E-value=0.03  Score=58.20  Aligned_cols=115  Identities=10%  Similarity=0.183  Sum_probs=77.9

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHH-HHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQI-QRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      +|+|+|+..          ....++..|.++|.+|.+||......+. ...++   .   .|         ...++....
T Consensus         3 kIgVIG~G~----------mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g---~---~~---------~~~~i~~~~   57 (478)
T 1pgj_A            3 DVGVVGLGV----------MGANLALNIAEKGFKVAVFNRTYSKSEEFMKANA---S---AP---------FAGNLKAFE   57 (478)
T ss_dssp             SEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTT---T---ST---------TGGGEEECS
T ss_pred             EEEEEChHH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcC---C---CC---------CCCCeEEEC
Confidence            699999865          8899999999999999999986433221 11111   0   00         012356677


Q ss_pred             CHHHhccc---ccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCCCChH--H----HhhcCcEEEEec
Q 011654          405 DAYQAAKD---AHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNILDVE--K----LREIGFIVYSIG  466 (480)
Q Consensus       405 ~~~~a~~~---ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~--~----~~~~g~~y~~iG  466 (480)
                      ++++++++   +|+|+++++.+ ..++ -.+.+...+++..+|||+.+.....  +    +.+.|+.|.+.+
T Consensus        58 ~~~e~v~~l~~aDvVilaVp~~~~v~~-vl~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~p  128 (478)
T 1pgj_A           58 TMEAFAASLKKPRKALILVQAGAATDS-TIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMG  128 (478)
T ss_dssp             CHHHHHHHBCSSCEEEECCCCSHHHHH-HHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             CHHHHHhcccCCCEEEEecCChHHHHH-HHHHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEee
Confidence            88888774   99999999986 4444 2356777777667999999887432  1    234577776654

>2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D

Probab=95.81  E-value=0.0062  Score=58.17  Aligned_cols=74  Identities=15%  Similarity=0.254  Sum_probs=49.1

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |+|.|.|+ |.+|..++..|++..+|++|+++++++++.+.+......+..            +.+.-..++.++++++|
T Consensus         1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~------------~D~~d~~~l~~~~~~~d   68 (287)
T 2jl1_A            1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRH------------GDYNQPESLQKAFAGVS   68 (287)
T ss_dssp             CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEE------------CCTTCHHHHHHHTTTCS
T ss_pred             CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEE------------eccCCHHHHHHHHhcCC
Confidence            68999996 999999999998753479999999987765554422111100            11110122445677899


Q ss_pred             EEEEecc
Q 011654           81 IVFVSVN   87 (480)
Q Consensus        81 vVii~Vp   87 (480)
                      +||-+..
T Consensus        69 ~vi~~a~   75 (287)
T 2jl1_A           69 KLLFISG   75 (287)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9998865

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=95.80  E-value=0.045  Score=54.48  Aligned_cols=35  Identities=26%  Similarity=0.393  Sum_probs=32.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR   38 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~   38 (480)
                      ++|+|+|+|.+|..+|..+...  |.+|+++|+++++
T Consensus       176 ktV~I~G~GnVG~~~A~~l~~~--GakVvvsD~~~~~  210 (355)
T 1c1d_A          176 LTVLVQGLGAVGGSLASLAAEA--GAQLLVADTDTER  210 (355)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCEEEEEeCCccH
Confidence            4799999999999999999987  8999999999875

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=95.79  E-value=0.022  Score=54.75  Aligned_cols=33  Identities=18%  Similarity=0.392  Sum_probs=30.9

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      |||.|.|+ |++|..++..|.++  ||+|+++.|++
T Consensus         1 MkILVTGatGfIG~~L~~~L~~~--G~~V~~l~R~~   34 (298)
T 4b4o_A            1 MRVLVGGGTGFIGTALTQLLNAR--GHEVTLVSRKP   34 (298)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCC
Confidence            89999997 99999999999998  99999999864

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=95.76  E-value=0.012  Score=57.51  Aligned_cols=40  Identities=20%  Similarity=0.248  Sum_probs=35.2

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN   43 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~   43 (480)
                      |+|.|.|+ |.+|..++..|++.  |++|++++++++..+.+.
T Consensus        12 ~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~~~   52 (342)
T 1y1p_A           12 SLVLVTGANGFVASHVVEQLLEH--GYKVRGTARSASKLANLQ   52 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH
T ss_pred             CEEEEECCccHHHHHHHHHHHHC--CCEEEEEeCCcccHHHHH
Confidence            68999997 99999999999998  999999999988765543

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.75  E-value=0.11  Score=53.93  Aligned_cols=111  Identities=12%  Similarity=0.125  Sum_probs=72.6

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhC-CC-EEEEECCCCC----hHHHHHhhhccccCCCCCCC-CCCCCCC
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGD-KA-KLSIYDPQVT----EDQIQRDLSMKKFDWDHPIH-LQPMSPP  395 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~-g~-~V~~~DP~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~  395 (480)
                      .-.||+|+|+.|          ....++..|.+. |. +|.+||..-.    ..+....       ...|++ ..+....
T Consensus        17 ~~mkIaVIGlG~----------mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~-------g~~~i~~~e~gl~~   79 (478)
T 3g79_A           17 PIKKIGVLGMGY----------VGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNR-------GESPLKGEEPGLEE   79 (478)
T ss_dssp             SCCEEEEECCST----------THHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTT-------TCCCSSCCGGGHHH
T ss_pred             CCCEEEEECcCH----------HHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHh-------cCCCccccCCCHHH
Confidence            446999999988          889999999999 99 9999998765    3222111       001110 0000000


Q ss_pred             ------CCCceeeecCHHHhcccccEEEEEeccccccc----cc-------HHHHHHhcCCCCEEEEcCCCCC
Q 011654          396 ------ASKQVNVVWDAYQAAKDAHGVCILTEWDEFKT----LD-------YQKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       396 ------~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~----~~-------~~~~~~~~~~~~~i~D~~~~~~  451 (480)
                            ...++..+++ .+++++||+++++++-+.-.+    .|       .+.+...+++..+|||...+..
T Consensus        80 l~~~~~~~g~l~~ttd-~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~p  151 (478)
T 3g79_A           80 LIGKVVKAGKFECTPD-FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITP  151 (478)
T ss_dssp             HHHHHHHTTCEEEESC-GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCT
T ss_pred             HHHhhcccCCeEEeCc-HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCCh
Confidence                  0245667777 789999999999987663111    12       2466777887889999876554

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=95.74  E-value=0.1  Score=52.40  Aligned_cols=131  Identities=12%  Similarity=0.011  Sum_probs=77.1

Q ss_pred             CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC---
Q 011654          322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK---  398 (480)
Q Consensus       322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  398 (480)
                      +.+++|+|+|..          .-.+..++.|...|++|.+||+.....+...+++   ..+..-.. .....+.+.   
T Consensus       182 v~~~kV~ViG~G----------~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lG---a~~~~l~~-~~~~~~gya~~~  247 (381)
T 3p2y_A          182 VKPASALVLGVG----------VAGLQALATAKRLGAKTTGYDVRPEVAEQVRSVG---AQWLDLGI-DAAGEGGYAREL  247 (381)
T ss_dssp             ECCCEEEEESCS----------HHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTT---CEECCCC--------------
T ss_pred             cCCCEEEEECch----------HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC---CeEEeccc-cccccccchhhh
Confidence            478899999974          3778899999999999999999876544333332   11100000 000000000   


Q ss_pred             ----ceeeecCHHHhcccccEEEEEecccc--cccccHHHHHHhcCCCCEEEEcC----CCCCh----HHHhhcCcEEEE
Q 011654          399 ----QVNVVWDAYQAAKDAHGVCILTEWDE--FKTLDYQKIFDNMRKPAYIFDGR----NILDV----EKLREIGFIVYS  464 (480)
Q Consensus       399 ----~~~~~~~~~~a~~~ad~vvi~t~h~~--~~~~~~~~~~~~~~~~~~i~D~~----~~~~~----~~~~~~g~~y~~  464 (480)
                          ......++.++++++|+||..+..|.  -..+=.++..+.|++..+|||..    +.++-    +.....|+.+++
T Consensus       248 ~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~t~~~~~~~~~gV~~~~  327 (381)
T 3p2y_A          248 SEAERAQQQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDLAGETGGNCELTEPGRTIVHHGVTITS  327 (381)
T ss_dssp             CHHHHHHHHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTCEEEETTEEEEC
T ss_pred             hHHHHhhhHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEEeCCCCCccccccCCCeEEECCEEEEe
Confidence                00012367789999999997654442  11122256778899888999985    34431    112345777766


Q ss_pred             ec
Q 011654          465 IG  466 (480)
Q Consensus       465 iG  466 (480)
                      +-
T Consensus       328 v~  329 (381)
T 3p2y_A          328 PL  329 (381)
T ss_dssp             CS
T ss_pred             eC
Confidence            54

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=95.74  E-value=0.015  Score=55.91  Aligned_cols=106  Identities=10%  Similarity=0.077  Sum_probs=71.4

Q ss_pred             CEEEEEee-ccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          325 KKIAILGF-AFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       325 ~~v~ilGl-a~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      .+|+|+|+ ..          .+..+++.|.+.|.+|.+||+.....+...++                      ++.. 
T Consensus        12 m~I~iIG~tG~----------mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~----------------------g~~~-   58 (286)
T 3c24_A           12 KTVAILGAGGK----------MGARITRKIHDSAHHLAAIEIAPEGRDRLQGM----------------------GIPL-   58 (286)
T ss_dssp             CEEEEETTTSH----------HHHHHHHHHHHSSSEEEEECCSHHHHHHHHHT----------------------TCCC-
T ss_pred             CEEEEECCCCH----------HHHHHHHHHHhCCCEEEEEECCHHHHHHHHhc----------------------CCCc-
Confidence            48999997 54          78899999999999999999864322211111                      1222 


Q ss_pred             cCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhh--cCcEEEE
Q 011654          404 WDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLRE--IGFIVYS  464 (480)
Q Consensus       404 ~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~--~g~~y~~  464 (480)
                      .+..++++++|+|++++..+..+++ .+.+...+++..+|+|+.+..+.+.+.+  .+..|.+
T Consensus        59 ~~~~~~~~~aDvVi~av~~~~~~~v-~~~l~~~l~~~~ivv~~s~~~~~~~l~~~~~~~~~v~  120 (286)
T 3c24_A           59 TDGDGWIDEADVVVLALPDNIIEKV-AEDIVPRVRPGTIVLILDAAAPYAGVMPERADITYFI  120 (286)
T ss_dssp             CCSSGGGGTCSEEEECSCHHHHHHH-HHHHGGGSCTTCEEEESCSHHHHHTCSCCCTTSEEEE
T ss_pred             CCHHHHhcCCCEEEEcCCchHHHHH-HHHHHHhCCCCCEEEECCCCchhHHHHhhhCCCeEEe
Confidence            2566788999999999988775542 2456566666679999887664333322  2456653

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=95.70  E-value=0.032  Score=54.68  Aligned_cols=74  Identities=16%  Similarity=0.169  Sum_probs=52.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCC---HHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe--cC---H
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDIS---VSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS--TD---I   72 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~---~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t--~d---~   72 (480)
                      .++.|+|+|-+|.+++..|++.  |. +|++++|+   .++.+.+.+.           +-.. ....+.+.  ++   +
T Consensus       155 k~~lVlGaGG~g~aia~~L~~~--Ga~~V~i~nR~~~~~~~a~~la~~-----------~~~~-~~~~~~~~~~~~~~~l  220 (315)
T 3tnl_A          155 KKMTICGAGGAATAICIQAALD--GVKEISIFNRKDDFYANAEKTVEK-----------INSK-TDCKAQLFDIEDHEQL  220 (315)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCSEEEEEECSSTTHHHHHHHHHH-----------HHHH-SSCEEEEEETTCHHHH
T ss_pred             CEEEEECCChHHHHHHHHHHHC--CCCEEEEEECCCchHHHHHHHHHH-----------hhhh-cCCceEEeccchHHHH
Confidence            4789999999999999999998  87 89999999   8887776531           1000 00112221  22   3


Q ss_pred             HHHhccCcEEEEeccCC
Q 011654           73 EKHVAEADIVFVSVNTP   89 (480)
Q Consensus        73 ~~a~~~aDvVii~Vptp   89 (480)
                      .+.+.++|+||-|+|..
T Consensus       221 ~~~l~~aDiIINaTp~G  237 (315)
T 3tnl_A          221 RKEIAESVIFTNATGVG  237 (315)
T ss_dssp             HHHHHTCSEEEECSSTT
T ss_pred             HhhhcCCCEEEECccCC
Confidence            45577999999998754

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=95.70  E-value=0.014  Score=56.30  Aligned_cols=74  Identities=11%  Similarity=0.134  Sum_probs=50.1

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCC-----HHHHHHHH---CCCCCCCCCChHHHHHhhcCCCEEEecC
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDIS-----VSRIAAWN---GDQLPIYEPGLEDVVTQCRGRNLFFSTD   71 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~-----~~~v~~l~---~~~~~~~e~~l~~l~~~~~~~~l~~t~d   71 (480)
                      +|+|.|.|+ |.+|..++..|.+.  |++|++++|+     +++.+.+.   .....+.            .+.+.-..+
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~------------~~D~~d~~~   69 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASISL--GHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLI------------EASLDDHQR   69 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEE------------CCCSSCHHH
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhC--CCcEEEEECCCcccchhHHHHHHHHHhCCeEEE------------eCCCCCHHH
Confidence            478999995 99999999999998  9999999998     55544332   2111111            111111123


Q ss_pred             HHHHhccCcEEEEeccC
Q 011654           72 IEKHVAEADIVFVSVNT   88 (480)
Q Consensus        72 ~~~a~~~aDvVii~Vpt   88 (480)
                      +.++++++|+||.+.+.
T Consensus        70 l~~~~~~~d~vi~~a~~   86 (313)
T 1qyd_A           70 LVDALKQVDVVISALAG   86 (313)
T ss_dssp             HHHHHTTCSEEEECCCC
T ss_pred             HHHHHhCCCEEEECCcc
Confidence            45667899999999764

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=95.69  E-value=0.0037  Score=61.83  Aligned_cols=64  Identities=19%  Similarity=0.236  Sum_probs=44.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCC--------CCeE-EEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCP--------KIEV-AVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDI   72 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~--------G~~V-~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~   72 (480)
                      +||+|||+|.||..++..+.++ +        +.+| .++|+++++.+    +   +   +.           -.+++|+
T Consensus         4 irvgIiG~G~VG~~~~~~l~~~-~~~l~~~g~~~~lvaV~d~~~~~~~----~---~---~~-----------~~~~~d~   61 (332)
T 2ejw_A            4 LKIALLGGGTVGSAFYNLVLER-AEELSAFGVVPRFLGVLVRDPRKPR----A---I---PQ-----------ELLRAEP   61 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT-GGGGGGGTEEEEEEEEECSCTTSCC----S---S---CG-----------GGEESSC
T ss_pred             eEEEEEcCCHHHHHHHHHHHhC-hhhHhhcCCCEEEEEEEECCHHHhh----c---c---Cc-----------ccccCCH
Confidence            6899999999999999998875 2        2454 45687744211    1   0   00           1246777


Q ss_pred             HHHhccCcEEEEeccC
Q 011654           73 EKHVAEADIVFVSVNT   88 (480)
Q Consensus        73 ~~a~~~aDvVii~Vpt   88 (480)
                      ++.+ +.|+|++|+|+
T Consensus        62 ~~ll-~iDvVve~t~~   76 (332)
T 2ejw_A           62 FDLL-EADLVVEAMGG   76 (332)
T ss_dssp             CCCT-TCSEEEECCCC
T ss_pred             HHHh-CCCEEEECCCC
Confidence            7767 99999999774

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.68  E-value=0.021  Score=56.81  Aligned_cols=94  Identities=18%  Similarity=0.314  Sum_probs=58.3

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHHhcc
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a~~~   78 (480)
                      |.||+||| .|++|.-+...|..+ |..++..+.-..+.      |+      .+.+...... ..+.+. .+.++...+
T Consensus        13 ~~~V~IvGAtG~vG~ellrlL~~h-P~~el~~l~S~~~a------G~------~~~~~~p~~~-~~l~~~~~~~~~~~~~   78 (351)
T 1vkn_A           13 MIRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRTYA------GK------KLEEIFPSTL-ENSILSEFDPEKVSKN   78 (351)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECSTTT------TS------BHHHHCGGGC-CCCBCBCCCHHHHHHH
T ss_pred             eeEEEEECCCCHHHHHHHHHHHcC-CCcEEEEEeCcccc------cC------ChHHhChhhc-cCceEEeCCHHHhhcC
Confidence            56899998 599999999999987 67788777643211      10      0111100000 112222 244443378


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      +|++|+|+|..                   +..++.+.+ .|..||+.|+
T Consensus        79 ~Dvvf~alp~~-------------------~s~~~~~~~-~g~~VIDlSs  108 (351)
T 1vkn_A           79 CDVLFTALPAG-------------------ASYDLVREL-KGVKIIDLGA  108 (351)
T ss_dssp             CSEEEECCSTT-------------------HHHHHHTTC-CSCEEEESSS
T ss_pred             CCEEEECCCcH-------------------HHHHHHHHh-CCCEEEECCh
Confidence            99999998742                   344556666 7899998876

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=95.67  E-value=0.0036  Score=59.98  Aligned_cols=36  Identities=22%  Similarity=0.194  Sum_probs=32.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR   38 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~   38 (480)
                      +|||.|.|+|++|..++..|.++  |++|++++++++.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~--g~~V~~~~r~~~~   38 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQ--GHEVTGLRRSAQP   38 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHT--TCCEEEEECTTSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHC--CCEEEEEeCCccc
Confidence            47899999999999999999998  9999999998653

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=95.63  E-value=0.013  Score=54.53  Aligned_cols=75  Identities=11%  Similarity=0.114  Sum_probs=51.2

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      +|+|.|.| .|.+|..++..|+++++|++|++.++++++.+.+..+ ..+..-+            +.-..++.++++++
T Consensus         4 ~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~-~~~~~~D------------~~d~~~~~~~~~~~   70 (253)
T 1xq6_A            4 LPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGE-ADVFIGD------------ITDADSINPAFQGI   70 (253)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCC-TTEEECC------------TTSHHHHHHHHTTC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCC-eeEEEec------------CCCHHHHHHHHcCC
Confidence            47899998 5999999999999873369999999999887765221 1111111            10012344567789


Q ss_pred             cEEEEeccC
Q 011654           80 DIVFVSVNT   88 (480)
Q Consensus        80 DvVii~Vpt   88 (480)
                      |+||-+...
T Consensus        71 d~vi~~a~~   79 (253)
T 1xq6_A           71 DALVILTSA   79 (253)
T ss_dssp             SEEEECCCC
T ss_pred             CEEEEeccc
Confidence            999998753

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=95.63  E-value=0.01  Score=59.39  Aligned_cols=32  Identities=25%  Similarity=0.629  Sum_probs=26.8

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      +||+|+| .|++|.-+...|.++ +..+++.+..
T Consensus        17 ~kV~IiGAtG~iG~~llr~L~~~-p~~elvai~~   49 (359)
T 1xyg_A           17 IRIGLLGASGYTGAEIVRLLANH-PHFQVTLMTA   49 (359)
T ss_dssp             EEEEEECCSSHHHHHHHHHHHTC-SSEEEEEEBC
T ss_pred             cEEEEECcCCHHHHHHHHHHHcC-CCcEEEEEeC
Confidence            5899999 899999999999876 5568777754

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=95.63  E-value=0.073  Score=51.45  Aligned_cols=84  Identities=11%  Similarity=0.079  Sum_probs=63.7

Q ss_pred             HHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCC
Q 011654          315 VSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSP  394 (480)
Q Consensus       315 ~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (480)
                      ++..+.++.+++|.|+|-+-         .-...++..|...|++|++.+-.                            
T Consensus       156 l~~~~i~l~gk~vvVIG~s~---------iVG~p~A~lL~~~gAtVtv~hs~----------------------------  198 (301)
T 1a4i_A          156 IKETGVPIAGRHAVVVGRSK---------IVGAPMHDLLLWNNATVTTCHSK----------------------------  198 (301)
T ss_dssp             HHTTTCCCTTCEEEEECCCT---------TTHHHHHHHHHHTTCEEEEECTT----------------------------
T ss_pred             HHHcCCCCCCCEEEEECCCc---------hHHHHHHHHHHhCCCeEEEEECC----------------------------
Confidence            34445578999999999632         34688999999999999998632                            


Q ss_pred             CCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC
Q 011654          395 PASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI  449 (480)
Q Consensus       395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~  449 (480)
                              ..++.+.++.||+||.++..+.|-  ..+.    .++.++|||.---
T Consensus       199 --------t~~L~~~~~~ADIVI~Avg~p~~I--~~~~----vk~GavVIDVgi~  239 (301)
T 1a4i_A          199 --------TAHLDEEVNKGDILVVATGQPEMV--KGEW----IKPGAIVIDCGIN  239 (301)
T ss_dssp             --------CSSHHHHHTTCSEEEECCCCTTCB--CGGG----SCTTCEEEECCCB
T ss_pred             --------cccHHHHhccCCEEEECCCCcccC--CHHH----cCCCcEEEEccCC
Confidence                    135678899999999999999873  3323    3566799998653

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=95.60  E-value=0.011  Score=56.96  Aligned_cols=74  Identities=14%  Similarity=0.113  Sum_probs=49.6

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCH-------HHHHHHH---CCCCCCCCCChHHHHHhhcCCCEEEe
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISV-------SRIAAWN---GDQLPIYEPGLEDVVTQCRGRNLFFS   69 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~-------~~v~~l~---~~~~~~~e~~l~~l~~~~~~~~l~~t   69 (480)
                      ||+|.|.|+ |.+|..++..|++.  |++|++++|++       ++.+.+.   .....+..            +.+.-.
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~------------~D~~d~   67 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASIKA--GNPTYALVRKTITAANPETKEELIDNYQSLGVILLE------------GDINDH   67 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHH--TCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEE------------CCTTCH
T ss_pred             CcEEEEECCCchHHHHHHHHHHhC--CCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEE------------eCCCCH
Confidence            578999996 99999999999998  89999999986       5544332   11111000            111001


Q ss_pred             cCHHHHhccCcEEEEeccC
Q 011654           70 TDIEKHVAEADIVFVSVNT   88 (480)
Q Consensus        70 ~d~~~a~~~aDvVii~Vpt   88 (480)
                      .++.++++++|+||-|.+.
T Consensus        68 ~~l~~~~~~~d~vi~~a~~   86 (307)
T 2gas_A           68 ETLVKAIKQVDIVICAAGR   86 (307)
T ss_dssp             HHHHHHHTTCSEEEECSSS
T ss_pred             HHHHHHHhCCCEEEECCcc
Confidence            2345567889999999763

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=95.60  E-value=0.013  Score=56.34  Aligned_cols=93  Identities=13%  Similarity=0.024  Sum_probs=64.4

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      .+|+|+|+..          .+..++..|.+.|.+|.+|| .....+...+                      .++....
T Consensus         4 m~i~iiG~G~----------~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~----------------------~g~~~~~   50 (295)
T 1yb4_A            4 MKLGFIGLGI----------MGSPMAINLARAGHQLHVTT-IGPVADELLS----------------------LGAVNVE   50 (295)
T ss_dssp             CEEEECCCST----------THHHHHHHHHHTTCEEEECC-SSCCCHHHHT----------------------TTCBCCS
T ss_pred             CEEEEEccCH----------HHHHHHHHHHhCCCEEEEEc-CHHHHHHHHH----------------------cCCcccC
Confidence            4899999855          78899999999999999999 5433221111                      1344567


Q ss_pred             CHHHhcccccEEEEEecccc-cccccH--HHHHHhcCCCCEEEEcCCCC
Q 011654          405 DAYQAAKDAHGVCILTEWDE-FKTLDY--QKIFDNMRKPAYIFDGRNIL  450 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~-~~~~~~--~~~~~~~~~~~~i~D~~~~~  450 (480)
                      +++++++++|+|++++..+. .+.+-.  +.+...+++..+|+|..+..
T Consensus        51 ~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~   99 (295)
T 1yb4_A           51 TARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKTIVDMSSIS   99 (295)
T ss_dssp             SHHHHHHTCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEEEEECSCCC
T ss_pred             CHHHHHhcCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCEEEECCCCC
Confidence            88899999999999997764 222110  02233455667899998875

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=95.59  E-value=0.0025  Score=63.07  Aligned_cols=39  Identities=5%  Similarity=-0.093  Sum_probs=35.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      ++|.|+|+|.+|..++..|.+.  |+ |+++|+|+++++ +++
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~--g~-v~vid~~~~~~~-~~~  154 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGS--EV-FVLAEDENVRKK-VLR  154 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGS--CE-EEEESCGGGHHH-HHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhC--Cc-EEEEeCChhhhh-HHh
Confidence            4799999999999999999987  89 999999999998 764

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=95.59  E-value=0.026  Score=52.02  Aligned_cols=95  Identities=17%  Similarity=0.168  Sum_probs=66.2

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      ...+|+|+|...          .+..+++.|.+.|.+|.++|......   ..+.                   ..++..
T Consensus        27 ~~~~I~iiG~G~----------~G~~la~~l~~~g~~V~~~~r~~~~~---~~~~-------------------~~g~~~   74 (215)
T 2vns_A           27 EAPKVGILGSGD----------FARSLATRLVGSGFKVVVGSRNPKRT---ARLF-------------------PSAAQV   74 (215)
T ss_dssp             --CCEEEECCSH----------HHHHHHHHHHHTTCCEEEEESSHHHH---HHHS-------------------BTTSEE
T ss_pred             CCCEEEEEccCH----------HHHHHHHHHHHCCCEEEEEeCCHHHH---HHHH-------------------HcCCce
Confidence            346899999755          77899999999999999999853321   1221                   012344


Q ss_pred             ecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH
Q 011654          403 VWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE  453 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~  453 (480)
                      . +..++++++|+|++++....++++- + +.... +..+|+|..+.+...
T Consensus        75 ~-~~~~~~~~~DvVi~av~~~~~~~v~-~-l~~~~-~~~~vv~~s~g~~~~  121 (215)
T 2vns_A           75 T-FQEEAVSSPEVIFVAVFREHYSSLC-S-LSDQL-AGKILVDVSNPTEQE  121 (215)
T ss_dssp             E-EHHHHTTSCSEEEECSCGGGSGGGG-G-GHHHH-TTCEEEECCCCCHHH
T ss_pred             e-cHHHHHhCCCEEEECCChHHHHHHH-H-HHHhc-CCCEEEEeCCCcccc
Confidence            3 6788899999999999976665532 2 43333 345999999988654

>2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa}

Probab=95.58  E-value=0.0063  Score=59.64  Aligned_cols=73  Identities=18%  Similarity=0.195  Sum_probs=47.2

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      +|+|.|.|+ |.+|..++..|++.  |++|++++++++..+.+......+..            +.+.-..++.++++++
T Consensus        13 ~M~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~~~~~l~~~~~~~~~------------~Dl~d~~~~~~~~~~~   78 (342)
T 2x4g_A           13 HVKYAVLGATGLLGHHAARAIRAA--GHDLVLIHRPSSQIQRLAYLEPECRV------------AEMLDHAGLERALRGL   78 (342)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEECTTSCGGGGGGGCCEEEE------------CCTTCHHHHHHHTTTC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEecChHhhhhhccCCeEEEE------------ecCCCHHHHHHHHcCC
Confidence            379999995 99999999999998  99999999987654433321100000            1110011234556789


Q ss_pred             cEEEEecc
Q 011654           80 DIVFVSVN   87 (480)
Q Consensus        80 DvVii~Vp   87 (480)
                      |+||-|..
T Consensus        79 d~vih~a~   86 (342)
T 2x4g_A           79 DGVIFSAG   86 (342)
T ss_dssp             SEEEEC--
T ss_pred             CEEEECCc
Confidence            99998875

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=95.57  E-value=0.026  Score=53.38  Aligned_cols=90  Identities=12%  Similarity=0.004  Sum_probs=62.0

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      +|+|+|+..          ....++..|.+.|.+|.+||+.-.++.. ..+..                   .++.  ++
T Consensus         2 ~I~iIG~G~----------mG~~la~~l~~~g~~V~~~~~~~~~~~~-~~~~~-------------------~g~~--~~   49 (264)
T 1i36_A            2 RVGFIGFGE----------VAQTLASRLRSRGVEVVTSLEGRSPSTI-ERART-------------------VGVT--ET   49 (264)
T ss_dssp             EEEEESCSH----------HHHHHHHHHHHTTCEEEECCTTCCHHHH-HHHHH-------------------HTCE--EC
T ss_pred             eEEEEechH----------HHHHHHHHHHHCCCeEEEeCCccCHHHH-HHHHH-------------------CCCc--CC
Confidence            799999855          8899999999999999999984222222 11110                   1222  56


Q ss_pred             HHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCC
Q 011654          406 AYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNIL  450 (480)
Q Consensus       406 ~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~  450 (480)
                      +.++++++|+|+++++.+...+. ...+...++ + +|+|..+.-
T Consensus        50 ~~~~~~~aDvvi~~v~~~~~~~~-~~~~~~~~~-~-~vi~~s~~~   91 (264)
T 1i36_A           50 SEEDVYSCPVVISAVTPGVALGA-ARRAGRHVR-G-IYVDINNIS   91 (264)
T ss_dssp             CHHHHHTSSEEEECSCGGGHHHH-HHHHHTTCC-S-EEEECSCCC
T ss_pred             HHHHHhcCCEEEEECCCHHHHHH-HHHHHHhcC-c-EEEEccCCC
Confidence            77888999999999988753321 245655554 4 899996553

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.57  E-value=0.054  Score=52.46  Aligned_cols=119  Identities=10%  Similarity=0.084  Sum_probs=70.7

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHh--------hhccccCCCCC--CCCCCCCC
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRD--------LSMKKFDWDHP--IHLQPMSP  394 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~--------~~~~~~~~~~~--~~~~~~~~  394 (480)
                      ++|+|+|+..          ....++..|.+.|++|.+||+.....+....        +...+. ....  .+.  ...
T Consensus        16 ~~I~VIG~G~----------mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~-~~~~~~~~~--~~~   82 (302)
T 1f0y_A           16 KHVTVIGGGL----------MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKF-AENPKAGDE--FVE   82 (302)
T ss_dssp             CEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTS-SSCHHHHHH--HHH
T ss_pred             CEEEEECCCH----------HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCC-CCccccchh--hHH
Confidence            6899999865          8889999999999999999986433211000        000000 0000  000  000


Q ss_pred             CCCCceeeecCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCCCCChHHHh
Q 011654          395 PASKQVNVVWDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRNILDVEKLR  456 (480)
Q Consensus       395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~  456 (480)
                      ....++...+++.+++++||+||+++.-+. .+.--++++...+++..+|+...+-++...+.
T Consensus        83 ~~~~~i~~~~~~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i~~~~l~  145 (302)
T 1f0y_A           83 KTLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIA  145 (302)
T ss_dssp             HHHHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHH
T ss_pred             HHHhceEEecCHHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHH
Confidence            001246677888889999999999986542 22212344555555556788777777766553

>3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri}

Probab=95.56  E-value=0.012  Score=57.25  Aligned_cols=34  Identities=21%  Similarity=0.215  Sum_probs=31.3

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      ||+|.|.|+ |.+|..++..|++.  |++|++++|++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~~~--g~~V~~~~R~~   38 (321)
T 3c1o_A            4 MEKIIIYGGTGYIGKFMVRASLSF--SHPTFIYARPL   38 (321)
T ss_dssp             CCCEEEETTTSTTHHHHHHHHHHT--TCCEEEEECCC
T ss_pred             ccEEEEEcCCchhHHHHHHHHHhC--CCcEEEEECCc
Confidence            578999995 99999999999998  99999999985

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=95.55  E-value=0.045  Score=52.40  Aligned_cols=73  Identities=18%  Similarity=0.331  Sum_probs=0.0

Q ss_pred             cEEEEEcCChh-HHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYV-GGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~-G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .++.|||.|.+ |.++|..|...+.|.+|++.++.                                 +.++.+.+++||
T Consensus       159 k~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~---------------------------------t~~L~~~~~~AD  205 (281)
T 2c2x_A          159 AHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTG---------------------------------TRDLPALTRQAD  205 (281)
T ss_dssp             CEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTT---------------------------------CSCHHHHHTTCS
T ss_pred             CEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECc---------------------------------hhHHHHHHhhCC


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      +||.+++.|.-...                    ..+++|.+||+.+
T Consensus       206 IVI~Avg~p~~I~~--------------------~~vk~GavVIDVg  232 (281)
T 2c2x_A          206 IVVAAVGVAHLLTA--------------------DMVRPGAAVIDVG  232 (281)
T ss_dssp             EEEECSCCTTCBCG--------------------GGSCTTCEEEECC
T ss_pred             EEEECCCCCcccCH--------------------HHcCCCcEEEEcc

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=95.47  E-value=0.076  Score=50.98  Aligned_cols=82  Identities=11%  Similarity=0.069  Sum_probs=62.6

Q ss_pred             HHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCC
Q 011654          315 VSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSP  394 (480)
Q Consensus       315 ~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (480)
                      ++..+.++.+++|.|+|.+-         .-...++..|...|++|++.+-..                           
T Consensus       150 l~~~~i~l~gk~vvVIG~s~---------iVG~p~A~lL~~~gAtVtv~hs~t---------------------------  193 (288)
T 1b0a_A          150 LERYNIDTFGLNAVVIGASN---------IVGRPMSMELLLAGCTTTVTHRFT---------------------------  193 (288)
T ss_dssp             HHHTTCCCTTCEEEEECCCT---------TTHHHHHHHHHTTTCEEEEECSSC---------------------------
T ss_pred             HHHcCCCCCCCEEEEECCCh---------HHHHHHHHHHHHCCCeEEEEeCCc---------------------------
Confidence            34445678999999999632         246889999999999999986321                           


Q ss_pred             CCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          395 PASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                               .++.+.++.||+||.++..+.|-.-+|      .++.++|||.-
T Consensus       194 ---------~~L~~~~~~ADIVI~Avg~p~lI~~~~------vk~GavVIDVg  231 (288)
T 1b0a_A          194 ---------KNLRHHVENADLLIVAVGKPGFIPGDW------IKEGAIVIDVG  231 (288)
T ss_dssp             ---------SCHHHHHHHCSEEEECSCCTTCBCTTT------SCTTCEEEECC
T ss_pred             ---------hhHHHHhccCCEEEECCCCcCcCCHHH------cCCCcEEEEcc
Confidence                     356788999999999999998743333      35677999975

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=95.41  E-value=0.023  Score=56.40  Aligned_cols=93  Identities=11%  Similarity=0.100  Sum_probs=65.7

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      ..+|+|+|+.          ...-.++..|.+.|.+|.+||+.....+...++                      ++...
T Consensus         8 ~~kIgIIG~G----------~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~----------------------G~~~~   55 (341)
T 3ktd_A            8 SRPVCILGLG----------LIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDE----------------------GFDVS   55 (341)
T ss_dssp             SSCEEEECCS----------HHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHT----------------------TCCEE
T ss_pred             CCEEEEEeec----------HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----------------------CCeee
Confidence            4689999984          378889999999999999999865433322222                      23445


Q ss_pred             cCHHHhccc----ccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCC
Q 011654          404 WDAYQAAKD----AHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNIL  450 (480)
Q Consensus       404 ~~~~~a~~~----ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~  450 (480)
                      +++.+++++    +|+|+++++-....++ .+++... ++..+|+|..++-
T Consensus        56 ~~~~e~~~~a~~~aDlVilavP~~~~~~v-l~~l~~~-~~~~iv~Dv~Svk  104 (341)
T 3ktd_A           56 ADLEATLQRAAAEDALIVLAVPMTAIDSL-LDAVHTH-APNNGFTDVVSVK  104 (341)
T ss_dssp             SCHHHHHHHHHHTTCEEEECSCHHHHHHH-HHHHHHH-CTTCCEEECCSCS
T ss_pred             CCHHHHHHhcccCCCEEEEeCCHHHHHHH-HHHHHcc-CCCCEEEEcCCCC
Confidence            677777764    6999999996654432 2455554 5567999997764

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=95.38  E-value=0.033  Score=54.02  Aligned_cols=81  Identities=15%  Similarity=0.032  Sum_probs=63.1

Q ss_pred             CCEEEEEe-eccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          324 GKKIAILG-FAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       324 ~~~v~ilG-la~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      .++|+|+| +..          ....++..|.+.|.+|.+||+...                                  
T Consensus        21 ~~~I~iIGg~G~----------mG~~la~~l~~~G~~V~~~~~~~~----------------------------------   56 (298)
T 2pv7_A           21 IHKIVIVGGYGK----------LGGLFARYLRASGYPISILDREDW----------------------------------   56 (298)
T ss_dssp             CCCEEEETTTSH----------HHHHHHHHHHTTTCCEEEECTTCG----------------------------------
T ss_pred             CCEEEEEcCCCH----------HHHHHHHHHHhCCCeEEEEECCcc----------------------------------
Confidence            35899999 866          889999999999999999997431                                  


Q ss_pred             ecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCC
Q 011654          403 VWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNIL  450 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~  450 (480)
                       .+..++++++|+|+++++-+...++ .+++...+++..+|+|..++-
T Consensus        57 -~~~~~~~~~aDvVilavp~~~~~~v-l~~l~~~l~~~~iv~~~~svk  102 (298)
T 2pv7_A           57 -AVAESILANADVVIVSVPINLTLET-IERLKPYLTENMLLADLTSVK  102 (298)
T ss_dssp             -GGHHHHHTTCSEEEECSCGGGHHHH-HHHHGGGCCTTSEEEECCSCC
T ss_pred             -cCHHHHhcCCCEEEEeCCHHHHHHH-HHHHHhhcCCCcEEEECCCCC
Confidence             1356778999999999998875542 245666677677999987753

>2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C*

Probab=95.37  E-value=0.0077  Score=59.74  Aligned_cols=33  Identities=21%  Similarity=0.384  Sum_probs=26.7

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcC-CCCeEEEEe
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKC-PKIEVAVVD   33 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~-~G~~V~~~D   33 (480)
                      ||||+|+| .|++|.-+...|.++. |.++++.+.
T Consensus         3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~   37 (336)
T 2r00_A            3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLA   37 (336)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEE
Confidence            58999999 9999999999888752 456777665

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=95.35  E-value=0.0084  Score=59.80  Aligned_cols=31  Identities=29%  Similarity=0.589  Sum_probs=26.3

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEe
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVD   33 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D   33 (480)
                      +||+|+| .|++|.-+...|..+ |..+++.+.
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~-p~~elvai~   36 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKH-PYLELVKVS   36 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTC-SSEEEEEEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhC-CCcEEEEEe
Confidence            6899999 799999999988875 567887774

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=95.32  E-value=0.083  Score=50.07  Aligned_cols=108  Identities=10%  Similarity=0.016  Sum_probs=70.0

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCCh-HHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTE-DQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      ..+++ +|+|+|..-          .+..++..|.+.|++|.++|+.... +.+...++                     
T Consensus       113 ~~l~~-~v~iiG~G~----------~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~---------------------  160 (263)
T 2d5c_A          113 IPLKG-PALVLGAGG----------AGRAVAFALREAGLEVWVWNRTPQRALALAEEFG---------------------  160 (263)
T ss_dssp             CCCCS-CEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHT---------------------
T ss_pred             CCCCC-eEEEECCcH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc---------------------
Confidence            35678 999999754          7788999999999999999987533 22222221                     


Q ss_pred             ceeeecCHHHhcccccEEEEEecccccccccHHHH-HHhcCCCCEEEEcCCCCCh----HHHhhcCcEEE
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKI-FDNMRKPAYIFDGRNILDV----EKLREIGFIVY  463 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~-~~~~~~~~~i~D~~~~~~~----~~~~~~g~~y~  463 (480)
                       .. .++++++ +++|+||++|+...+.+.+ ..+ .+.+++..+|+|.-.....    +.+++.|.++.
T Consensus       161 -~~-~~~~~~~-~~~Divi~~tp~~~~~~~~-~~l~~~~l~~g~~viD~~~~p~~t~l~~~a~~~g~~~v  226 (263)
T 2d5c_A          161 -LR-AVPLEKA-REARLLVNATRVGLEDPSA-SPLPAELFPEEGAAVDLVYRPLWTRFLREAKAKGLKVQ  226 (263)
T ss_dssp             -CE-ECCGGGG-GGCSEEEECSSTTTTCTTC-CSSCGGGSCSSSEEEESCCSSSSCHHHHHHHHTTCEEE
T ss_pred             -cc-hhhHhhc-cCCCEEEEccCCCCCCCCC-CCCCHHHcCCCCEEEEeecCCcccHHHHHHHHCcCEEE
Confidence             11 2466777 8999999999987643211 001 2445666689998654221    23345677653

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=95.31  E-value=0.11  Score=50.61  Aligned_cols=103  Identities=12%  Similarity=0.059  Sum_probs=65.5

Q ss_pred             EEEEE-cC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654            3 KICCI-GA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E   78 (480)
Q Consensus         3 kI~VI-Gl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~   78 (480)
                      +++|| |+ |.+|...+..|.+.  |++ .++++||.+.     +. .+              .++.+..+++++.+  .
T Consensus        15 siaVV~Gasg~~G~~~~~~l~~~--G~~-~v~~VnP~~~-----g~-~i--------------~G~~vy~sl~el~~~~~   71 (305)
T 2fp4_A           15 TKVICQGFTGKQGTFHSQQALEY--GTN-LVGGTTPGKG-----GK-TH--------------LGLPVFNTVKEAKEQTG   71 (305)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH--TCE-EEEEECTTCT-----TC-EE--------------TTEEEESSHHHHHHHHC
T ss_pred             cEEEEECCCCCHHHHHHHHHHHC--CCc-EEEEeCCCcC-----cc-eE--------------CCeeeechHHHhhhcCC
Confidence            58888 98 99999999999988  898 5567766421     10 00              24677788888777  7


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      .|++++++|.+               ...++++++.+. .-..+|+..+.++....+++.+..++.
T Consensus        72 vD~avI~vP~~---------------~~~~~~~e~i~~-Gi~~iv~~t~G~~~~~~~~l~~~a~~~  121 (305)
T 2fp4_A           72 ATASVIYVPPP---------------FAAAAINEAIDA-EVPLVVCITEGIPQQDMVRVKHRLLRQ  121 (305)
T ss_dssp             CCEEEECCCHH---------------HHHHHHHHHHHT-TCSEEEECCCCCCHHHHHHHHHHHTTC
T ss_pred             CCEEEEecCHH---------------HHHHHHHHHHHC-CCCEEEEECCCCChHHHHHHHHHHHhc
Confidence            99999999842               234555555442 223444443333332233566666655

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.30  E-value=0.049  Score=55.88  Aligned_cols=114  Identities=12%  Similarity=0.132  Sum_probs=67.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +||.|||+|..|.+.|..|+++  |++|+++|.....-     +...+. .|          -++..-....+.+.++|.
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~--G~~v~~~D~~~~~~-----~~~~l~-~G----------~~~~~g~~~~~~~~~~d~   67 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMTPP-----GLDKLP-EA----------VERHTGSLNDEWLMAADL   67 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTT--TCCCEEEESSSSCT-----TGGGSC-TT----------SCEEESSCCHHHHHTCSE
T ss_pred             CEEEEEeecHHHHHHHHHHHhC--CCEEEEEECCCCcc-----hhHHhh-CC----------CEEEECCCcHHHhccCCE
Confidence            6899999999999999888887  99999999854210     000000 01          112212222445678999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH----------HHHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA----------RMIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS  145 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~----------~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~  145 (480)
                      ||++..-|.+        .|   .+..+.          +-+...+ +..+|-+..|..-+||.. +..+|++.+
T Consensus        68 vV~s~gi~~~--------~p---~~~~a~~~~~~v~~~~~~~~~~~-~~~vI~VTGTnGKTTT~~ml~~iL~~~g  130 (439)
T 2x5o_A           68 IVASPGIALA--------HP---SLSAAADAGIEIVGDIELFCREA-QAPIVAITGSNGKSTVTTLVGEMAKAAG  130 (439)
T ss_dssp             EEECTTSCTT--------CH---HHHHHHHTTCEEECHHHHHHHHC-CSCEEEEECSSSHHHHHHHHHHHHHHTT
T ss_pred             EEeCCCCCCC--------CH---HHHHHHHCCCcEEEHHHHHHHhc-CCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            9888443321        12   222211          1122233 356777778887777665 677887753

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=95.29  E-value=0.0042  Score=57.27  Aligned_cols=69  Identities=13%  Similarity=0.345  Sum_probs=45.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHH-HHHH-HHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVS-RIAA-WNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~-~v~~-l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-   77 (480)
                      .+|+|||+|.+|..++..+.....|++++ .+|.|++ ++.. .-.| .|                 +.-.+++++.++ 
T Consensus        85 ~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~G-vp-----------------V~~~~dL~~~v~~  146 (212)
T 3keo_A           85 TNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDG-IP-----------------VYGISTINDHLID  146 (212)
T ss_dssp             EEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTC-CB-----------------EEEGGGHHHHC-C
T ss_pred             CEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECC-eE-----------------EeCHHHHHHHHHH
Confidence            47999999999999998742111377766 5799987 5432 1111 11                 222355666554 


Q ss_pred             -cCcEEEEeccC
Q 011654           78 -EADIVFVSVNT   88 (480)
Q Consensus        78 -~aDvVii~Vpt   88 (480)
                       +.|.+++|+|+
T Consensus       147 ~~Id~vIIAvPs  158 (212)
T 3keo_A          147 SDIETAILTVPS  158 (212)
T ss_dssp             CSCCEEEECSCG
T ss_pred             cCCCEEEEecCc
Confidence             58999999885

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.29  E-value=0.014  Score=53.64  Aligned_cols=32  Identities=25%  Similarity=0.313  Sum_probs=29.9

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .|+|||+|..|+++|..|+++  |++|+++|+++
T Consensus         4 dV~IIGaGpaGL~aA~~La~~--G~~V~v~Ek~~   35 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAA--GHQVHLFDKSR   35 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCCEEEEECCC
Confidence            599999999999999999998  99999999854

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=95.27  E-value=0.11  Score=49.95  Aligned_cols=80  Identities=14%  Similarity=0.106  Sum_probs=61.2

Q ss_pred             HhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCC
Q 011654          317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPA  396 (480)
Q Consensus       317 ~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (480)
                      ..+..+++++|.|+|-+-         .-..+++..|...|++|.+.+-.                              
T Consensus       153 ~~~i~l~Gk~vvVvGrs~---------iVG~p~A~lL~~~gAtVtv~h~~------------------------------  193 (285)
T 3p2o_A          153 AYEIDLEGKDAVIIGASN---------IVGRPMATMLLNAGATVSVCHIK------------------------------  193 (285)
T ss_dssp             HTTCCCTTCEEEEECCCT---------TTHHHHHHHHHHTTCEEEEECTT------------------------------
T ss_pred             HhCCCCCCCEEEEECCCc---------hHHHHHHHHHHHCCCeEEEEeCC------------------------------
Confidence            344568999999999531         24788999999999999997632                              


Q ss_pred             CCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          397 SKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       397 ~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                            ..++++.++.||+||.+|..+.|-  +.+    .+++.++|||.-
T Consensus       194 ------t~~L~~~~~~ADIVI~Avg~p~~I--~~~----~vk~GavVIDVg  232 (285)
T 3p2o_A          194 ------TKDLSLYTRQADLIIVAAGCVNLL--RSD----MVKEGVIVVDVG  232 (285)
T ss_dssp             ------CSCHHHHHTTCSEEEECSSCTTCB--CGG----GSCTTEEEEECC
T ss_pred             ------chhHHHHhhcCCEEEECCCCCCcC--CHH----HcCCCeEEEEec
Confidence                  135678899999999999999873  332    346677999985

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=95.27  E-value=0.065  Score=54.21  Aligned_cols=140  Identities=11%  Similarity=-0.012  Sum_probs=81.0

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCC-CCCCCCCC--CCCC
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDH-PIHLQPMS--PPAS  397 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~  397 (480)
                      .+.+.+|+|+|..          .-.+..++.|...|++|.+||+.....+...+++.   .+-. +....++.  .+.+
T Consensus       187 ~v~~~kV~ViG~G----------~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~---~~~~~~~~~~~d~~~~~~y  253 (405)
T 4dio_A          187 TVPAAKIFVMGAG----------VAGLQAIATARRLGAVVSATDVRPAAKEQVASLGA---KFIAVEDEEFKAAETAGGY  253 (405)
T ss_dssp             EECCCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTC---EECCCCC------------
T ss_pred             CcCCCEEEEECCc----------HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCC---ceeecccccccccccccch
Confidence            3578899999974          37889999999999999999998876444333321   1000 00000000  0000


Q ss_pred             -Ccee------eecCHHHhcccccEEEEEecccccc--cccHHHHHHhcCCCCEEEEcC----CCCCh----HHHhhcCc
Q 011654          398 -KQVN------VVWDAYQAAKDAHGVCILTEWDEFK--TLDYQKIFDNMRKPAYIFDGR----NILDV----EKLREIGF  460 (480)
Q Consensus       398 -~~~~------~~~~~~~a~~~ad~vvi~t~h~~~~--~~~~~~~~~~~~~~~~i~D~~----~~~~~----~~~~~~g~  460 (480)
                       ..++      -..++.++++++|+||-.+-.|.=+  .+=.++..+.|++..+|||..    +.++-    +.....|+
T Consensus       254 a~e~s~~~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~t~~~~~~~~~GV  333 (405)
T 4dio_A          254 AKEMSGEYQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEGAEAGKVTEVGGV  333 (405)
T ss_dssp             -----CHHHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTTCCTTEEEEETTE
T ss_pred             hhhcchhhhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccccCCCCeEEECCE
Confidence             0000      0136788999999998764333211  122256778999888999996    34432    11234677


Q ss_pred             EEEEecC-CCCcCc
Q 011654          461 IVYSIGK-PLDPWH  473 (480)
Q Consensus       461 ~y~~iG~-~~~~~~  473 (480)
                      .++|+-. +...|.
T Consensus       334 ~~~gv~nlP~~vp~  347 (405)
T 4dio_A          334 RIVGHLNVAGRIAA  347 (405)
T ss_dssp             EEEECSSGGGGGHH
T ss_pred             EEEEeCCCCccCHH
Confidence            7777643 333343

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=95.27  E-value=0.17  Score=49.05  Aligned_cols=97  Identities=13%  Similarity=0.085  Sum_probs=61.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-ecCHHHH-hccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-STDIEKH-VAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t~d~~~a-~~~a   79 (480)
                      ++|..||||..|.+. ..+++. +|.+|+++|++++.++..++.            .....-.++++ ..|..+. -...
T Consensus       124 ~rVLDIGcG~G~~ta-~~lA~~-~ga~V~gIDis~~~l~~Ar~~------------~~~~gl~~v~~v~gDa~~l~d~~F  189 (298)
T 3fpf_A          124 ERAVFIGGGPLPLTG-ILLSHV-YGMRVNVVEIEPDIAELSRKV------------IEGLGVDGVNVITGDETVIDGLEF  189 (298)
T ss_dssp             CEEEEECCCSSCHHH-HHHHHT-TCCEEEEEESSHHHHHHHHHH------------HHHHTCCSEEEEESCGGGGGGCCC
T ss_pred             CEEEEECCCccHHHH-HHHHHc-cCCEEEEEECCHHHHHHHHHH------------HHhcCCCCeEEEECchhhCCCCCc
Confidence            589999999976543 334543 488999999999988876641            11100024443 2333331 1467


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      |+|+++...            +|   ...+++++.+.+++|..++...
T Consensus       190 DvV~~~a~~------------~d---~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          190 DVLMVAALA------------EP---KRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             SEEEECTTC------------SC---HHHHHHHHHHHCCTTCEEEEEE
T ss_pred             CEEEECCCc------------cC---HHHHHHHHHHHcCCCcEEEEEc
Confidence            999986431            12   2577889999999988776654

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=95.24  E-value=0.061  Score=49.92  Aligned_cols=33  Identities=15%  Similarity=0.252  Sum_probs=29.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      ++|.|||.|.+|..-+..|.+.  |.+|++++.+.
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~--GA~VtVvap~~   64 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQE--GAAITVVAPTV   64 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGG--CCCEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEECCCC
Confidence            5799999999999999999998  89999998753

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=95.23  E-value=0.017  Score=56.95  Aligned_cols=73  Identities=18%  Similarity=0.156  Sum_probs=48.8

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCH----HHHHHHH---CCCCCCCCCChHHHHHhhcCCCEEEecCHH
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISV----SRIAAWN---GDQLPIYEPGLEDVVTQCRGRNLFFSTDIE   73 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~----~~v~~l~---~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~   73 (480)
                      |+|.|.|+ |.+|..++..|.+.  |++|++++|++    ++.+.+.   .....+..            +.+.-..++.
T Consensus        11 ~~IlVtGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~------------~Dl~d~~~l~   76 (346)
T 3i6i_A           11 GRVLIAGATGFIGQFVATASLDA--HRPTYILARPGPRSPSKAKIFKALEDKGAIIVY------------GLINEQEAME   76 (346)
T ss_dssp             CCEEEECTTSHHHHHHHHHHHHT--TCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEE------------CCTTCHHHHH
T ss_pred             CeEEEECCCcHHHHHHHHHHHHC--CCCEEEEECCCCCChhHHHHHHHHHhCCcEEEE------------eecCCHHHHH
Confidence            58999997 99999999999998  89999999976    4444322   11111110            1111112344


Q ss_pred             HHhc--cCcEEEEeccC
Q 011654           74 KHVA--EADIVFVSVNT   88 (480)
Q Consensus        74 ~a~~--~aDvVii~Vpt   88 (480)
                      ++++  ++|+||-+.+.
T Consensus        77 ~~~~~~~~d~Vi~~a~~   93 (346)
T 3i6i_A           77 KILKEHEIDIVVSTVGG   93 (346)
T ss_dssp             HHHHHTTCCEEEECCCG
T ss_pred             HHHhhCCCCEEEECCch
Confidence            5667  89999999753

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=95.22  E-value=0.044  Score=54.46  Aligned_cols=32  Identities=16%  Similarity=0.221  Sum_probs=26.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEe
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVD   33 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D   33 (480)
                      |+||+|+|.|++|.-+...|..+ |.++|+.+.
T Consensus        17 ~ikVgI~G~G~iGr~llR~l~~~-p~veivain   48 (354)
T 3cps_A           17 QGTLGINGFGRIGRLVLRACMER-NDITVVAIN   48 (354)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHTC-SSCEEEEEE
T ss_pred             ceEEEEECCCHHHHHHHHHHHcC-CCeEEEEec
Confidence            46999999999999999998875 578877765

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=95.20  E-value=0.037  Score=57.07  Aligned_cols=96  Identities=17%  Similarity=0.198  Sum_probs=69.9

Q ss_pred             CCC-CEEEEEeeccCCCCCcccCChHHHHHHHHHhC------CCEEEEECCCC-ChHHHHHhhhccccCCCCCCCCCCCC
Q 011654          322 VSG-KKIAILGFAFKKDTGDTRETPAIDVCKGLLGD------KAKLSIYDPQV-TEDQIQRDLSMKKFDWDHPIHLQPMS  393 (480)
Q Consensus       322 ~~~-~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~------g~~V~~~DP~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  393 (480)
                      +++ ++|+|+|+          .+....++..|++.      |.+|.+.+..- ........++                
T Consensus        51 L~GiKkIgIIGl----------GsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G----------------  104 (525)
T 3fr7_A           51 FKGIKQIGVIGW----------GSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAG----------------  104 (525)
T ss_dssp             TTTCSEEEEECC----------TTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTT----------------
T ss_pred             hcCCCEEEEEeE----------hHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCC----------------
Confidence            578 99999997          46888999999888      99988665432 2222222222                


Q ss_pred             CCCCCceee----ecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCC
Q 011654          394 PPASKQVNV----VWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNIL  450 (480)
Q Consensus       394 ~~~~~~~~~----~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~  450 (480)
                            +..    ..++.+++++||+|+++++-....++ +.++...|++.++|..+.++.
T Consensus       105 ------~~v~d~ta~s~aEAa~~ADVVILaVP~~~~~eV-l~eI~p~LK~GaILs~AaGf~  158 (525)
T 3fr7_A          105 ------FTEESGTLGDIWETVSGSDLVLLLISDAAQADN-YEKIFSHMKPNSILGLSHGFL  158 (525)
T ss_dssp             ------CCTTTTCEEEHHHHHHHCSEEEECSCHHHHHHH-HHHHHHHSCTTCEEEESSSHH
T ss_pred             ------CEEecCCCCCHHHHHhcCCEEEECCChHHHHHH-HHHHHHhcCCCCeEEEeCCCC
Confidence                  221    25789999999999999988766552 457888998888898888864

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=95.15  E-value=0.095  Score=50.27  Aligned_cols=82  Identities=15%  Similarity=0.108  Sum_probs=61.9

Q ss_pred             HHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCC
Q 011654          315 VSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSP  394 (480)
Q Consensus       315 ~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (480)
                      ++..+..+++++|.|+|-+-         .-...++..|...|++|++.+-.                            
T Consensus       152 L~~~~i~l~Gk~vvVIG~s~---------iVG~p~A~lL~~~gAtVtv~hs~----------------------------  194 (285)
T 3l07_A          152 LREYGIKTEGAYAVVVGASN---------VVGKPVSQLLLNAKATVTTCHRF----------------------------  194 (285)
T ss_dssp             HHHTTCCCTTCEEEEECCCT---------TTHHHHHHHHHHTTCEEEEECTT----------------------------
T ss_pred             HHHhCCCCCCCEEEEECCCc---------hhHHHHHHHHHHCCCeEEEEeCC----------------------------
Confidence            33444578999999999521         35788999999999999986432                            


Q ss_pred             CCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          395 PASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                              ..++++.++.||+||.+|..+.|  ++.++    +++.++|||.-
T Consensus       195 --------t~~L~~~~~~ADIVI~Avg~p~~--I~~~~----vk~GavVIDvg  233 (285)
T 3l07_A          195 --------TTDLKSHTTKADILIVAVGKPNF--ITADM----VKEGAVVIDVG  233 (285)
T ss_dssp             --------CSSHHHHHTTCSEEEECCCCTTC--BCGGG----SCTTCEEEECC
T ss_pred             --------chhHHHhcccCCEEEECCCCCCC--CCHHH----cCCCcEEEEec
Confidence                    13567889999999999999887  34333    36667999985

>3h2z_A Mannitol-1-phosphate 5-dehydrogenase; PSI- protein structure initiative, structural genomics, midwest for structural genomics (MCSG); 1.90A {Shigella flexneri 2a str}

Probab=95.14  E-value=0.017  Score=58.18  Aligned_cols=82  Identities=21%  Similarity=0.305  Sum_probs=52.3

Q ss_pred             cEEEEEcCChhHHHHH-HHHHHcCCCCeEEEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEe-c---CHHHH
Q 011654            2 VKICCIGAGYVGGPTM-AVIALKCPKIEVAVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFS-T---DIEKH   75 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA-~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t-~---d~~~a   75 (480)
                      ||+..+|+|++|..+- ..|.+.  |++|+..|+|+..+++|++.+ -.+..-|.++....+  .++++. +   +.-+.
T Consensus         1 mkavhfGaGniGRGfig~~l~~~--g~~v~f~dv~~~~i~~Ln~~~~Y~V~~~g~~~~~~~v--~~v~ai~s~~~~~~~~   76 (382)
T 3h2z_A            1 MKALHFGAGNIGRGFIGKLLADA--GIQLTFADVNQVVLDALNARHSYQVHVVGETEQVDTV--SGVNAVSSIGDDVVDL   76 (382)
T ss_dssp             CEEEEECCSHHHHHTHHHHHHHT--TCEEEEEESCHHHHHHHHHHSEEEEEEESSSEEEEEE--ESCEEEETTSSHHHHH
T ss_pred             CcEEEECCCccchhhHHHHHHHc--CCeEEEEeCCHHHHHHHhcCCCEEEEEccCCcceEEE--EEEEEEeCcHHHHHHH
Confidence            8999999999996655 455566  999999999999999999642 122211211100000  123322 1   13335


Q ss_pred             hccCcEEEEecc
Q 011654           76 VAEADIVFVSVN   87 (480)
Q Consensus        76 ~~~aDvVii~Vp   87 (480)
                      +.++|+|.++|+
T Consensus        77 i~~adlitT~vG   88 (382)
T 3h2z_A           77 IAQVDLVTTAVG   88 (382)
T ss_dssp             HTTCSEEEECCC
T ss_pred             HcCCCEEEECCC
Confidence            679999988876

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=95.14  E-value=0.05  Score=53.73  Aligned_cols=42  Identities=29%  Similarity=0.398  Sum_probs=31.4

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eC-CHHHHHHHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVV-DI-SVSRIAAWN   43 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~-~~~~v~~l~   43 (480)
                      |+||+|+|.|++|.-+.+.|..+ |..+|+++ |. +++....+-
T Consensus         1 mikVgI~G~G~iGr~l~R~l~~~-~~veivain~~~~~~~~~~ll   44 (334)
T 3cmc_O            1 AVKVGINGFGRIGRNVFRAALKN-PDIEVVAVNDLTDANTLAHLL   44 (334)
T ss_dssp             CEEEEEESCSHHHHHHHHHHTTC-TTEEEEEEECSSCHHHHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHhCC-CCeEEEEEeCCCCHHHHHHHh
Confidence            78999999999999999988765 56777765 43 455544443

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=95.14  E-value=0.019  Score=57.14  Aligned_cols=32  Identities=22%  Similarity=0.630  Sum_probs=26.0

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCC-----CCeEEEEe
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCP-----KIEVAVVD   33 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~-----G~~V~~~D   33 (480)
                      ||||+|+| .|++|.-+...|.++ +     .++++.+.
T Consensus         9 m~kVaIvGATG~vG~~llr~L~~~-~~~~~~~~ei~~l~   46 (352)
T 2nqt_A            9 ATKVAVAGASGYAGGEILRLLLGH-PAYADGRLRIGALT   46 (352)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTC-HHHHTTSEEEEEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHcC-CCCCCccEEEEEEE
Confidence            46999999 899999999999876 2     34777664

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=95.08  E-value=0.12  Score=53.22  Aligned_cols=117  Identities=8%  Similarity=-0.021  Sum_probs=73.9

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHH--HHHhhh---ccccCCCCCCCCCCCCCCCC
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQ--IQRDLS---MKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .-++|+|+|+..          ....|+..|.+.|.+|.+||.......  +...+.   ..+. .+..     +.....
T Consensus        53 ~i~kVaVIGaG~----------MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~-l~~~-----~~~~~~  116 (460)
T 3k6j_A           53 DVNSVAIIGGGT----------MGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKR-LNDK-----RIEKIN  116 (460)
T ss_dssp             CCCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTS-CCHH-----HHHHHH
T ss_pred             cCCEEEEECCCH----------HHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCC-CCHH-----HHHHHh
Confidence            347999999865          889999999999999999999754100  000000   0000 0000     000012


Q ss_pred             CceeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCCCChHHHh
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLR  456 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~  456 (480)
                      .+++..++++ ++++||.||.++.=+ +.+.--++++.+.+++.++|.+....++...+.
T Consensus       117 ~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~~ia  175 (460)
T 3k6j_A          117 ANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTCIFGTNTSSLDLNEIS  175 (460)
T ss_dssp             TTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHH
T ss_pred             cceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCCEEEecCCChhHHHHH
Confidence            3567777875 799999999998643 333323466777777777777887778776654

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=95.05  E-value=0.22  Score=43.27  Aligned_cols=114  Identities=12%  Similarity=0.161  Sum_probs=66.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh----c
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV----A   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~----~   77 (480)
                      ++|.-||+|. |. ++..+++..++.+|+++|++++.++..++...   ..++        ..++.+..|..+.+    .
T Consensus        27 ~~vldiG~G~-G~-~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~--------~~~~~~~~d~~~~~~~~~~   93 (178)
T 3hm2_A           27 ETLWDIGGGS-GS-IAIEWLRSTPQTTAVCFEISEERRERILSNAI---NLGV--------SDRIAVQQGAPRAFDDVPD   93 (178)
T ss_dssp             EEEEEESTTT-TH-HHHHHHTTSSSEEEEEECSCHHHHHHHHHHHH---TTTC--------TTSEEEECCTTGGGGGCCS
T ss_pred             CeEEEeCCCC-CH-HHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHH---HhCC--------CCCEEEecchHhhhhccCC
Confidence            3788999997 44 44555655457899999999998887664200   0000        11333333432223    4


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~  145 (480)
                      ..|+|++.-+...                ...++.+.+.++++..+++.. ........+...+++.+
T Consensus        94 ~~D~i~~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~-~~~~~~~~~~~~~~~~~  144 (178)
T 3hm2_A           94 NPDVIFIGGGLTA----------------PGVFAAAWKRLPVGGRLVANA-VTVESEQMLWALRKQFG  144 (178)
T ss_dssp             CCSEEEECC-TTC----------------TTHHHHHHHTCCTTCEEEEEE-CSHHHHHHHHHHHHHHC
T ss_pred             CCCEEEECCcccH----------------HHHHHHHHHhcCCCCEEEEEe-eccccHHHHHHHHHHcC
Confidence            5899987643210                346777888898877766533 33344445556666553

>4dpl_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; HET: NAP; 1.90A {Sulfolobus tokodaii} PDB: 4dpk_A* 4dpm_A*

Probab=95.05  E-value=0.008  Score=60.12  Aligned_cols=31  Identities=26%  Similarity=0.422  Sum_probs=25.7

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEe
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVD   33 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D   33 (480)
                      +||+||| .||+|.-+...|.++ |..++..+.
T Consensus         8 ~kVaIvGATGyvG~eLlrlL~~h-P~~el~~l~   39 (359)
T 4dpl_A            8 LKAAILGATGLVGIEYVRMLSNH-PYIKPAYLA   39 (359)
T ss_dssp             EEEEETTTTSTTHHHHHHHHTTC-SSEEEEEEE
T ss_pred             CeEEEECCCCHHHHHHHHHHHhC-CCceEEEEE
Confidence            4799999 699999999988775 667877664

>4dpk_A Malonyl-COA/succinyl-COA reductase; dinucleotide binding, dimerization domain, NADP, oxidoreductase; 2.05A {Sulfolobus tokodaii} PDB: 4dpm_A*

Probab=95.05  E-value=0.008  Score=60.12  Aligned_cols=31  Identities=26%  Similarity=0.422  Sum_probs=25.7

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEe
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVD   33 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D   33 (480)
                      +||+||| .||+|.-+...|.++ |..++..+.
T Consensus         8 ~kVaIvGATGyvG~eLlrlL~~h-P~~el~~l~   39 (359)
T 4dpk_A            8 LKAAILGATGLVGIEYVRMLSNH-PYIKPAYLA   39 (359)
T ss_dssp             EEEEETTTTSTTHHHHHHHHTTC-SSEEEEEEE
T ss_pred             CeEEEECCCCHHHHHHHHHHHhC-CCceEEEEE
Confidence            4799999 699999999988775 667877664

>1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2

Probab=95.03  E-value=0.084  Score=51.48  Aligned_cols=33  Identities=24%  Similarity=0.409  Sum_probs=29.8

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      ||+|.|.| .|.+|..++..|++.  |++|+++|++
T Consensus         1 M~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r~   34 (347)
T 1orr_A            1 MAKLLITGGCGFLGSNLASFALSQ--GIDLIVFDNL   34 (347)
T ss_dssp             -CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred             CcEEEEeCCCchhHHHHHHHHHhC--CCEEEEEeCC
Confidence            78999999 699999999999998  9999999974

>2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A*

Probab=95.02  E-value=0.02  Score=55.52  Aligned_cols=71  Identities=17%  Similarity=0.168  Sum_probs=46.8

Q ss_pred             EEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHH---HHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            3 KICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVS-RIAA---WNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~---l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      +|.|.|+ |.+|..++..|.+.  |++|++++|+++ +.+.   +......+..            +.+.-..++.++++
T Consensus        13 ~ilVtGatG~iG~~l~~~L~~~--g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~------------~Dl~d~~~l~~a~~   78 (318)
T 2r6j_A           13 KILIFGGTGYIGNHMVKGSLKL--GHPTYVFTRPNSSKTTLLDEFQSLGAIIVK------------GELDEHEKLVELMK   78 (318)
T ss_dssp             CEEEETTTSTTHHHHHHHHHHT--TCCEEEEECTTCSCHHHHHHHHHTTCEEEE------------CCTTCHHHHHHHHT
T ss_pred             eEEEECCCchHHHHHHHHHHHC--CCcEEEEECCCCchhhHHHHhhcCCCEEEE------------ecCCCHHHHHHHHc
Confidence            7999995 99999999999998  999999999864 2222   2211111100            11100123455678


Q ss_pred             cCcEEEEecc
Q 011654           78 EADIVFVSVN   87 (480)
Q Consensus        78 ~aDvVii~Vp   87 (480)
                      ++|+||.+.+
T Consensus        79 ~~d~vi~~a~   88 (318)
T 2r6j_A           79 KVDVVISALA   88 (318)
T ss_dssp             TCSEEEECCC
T ss_pred             CCCEEEECCc
Confidence            8999999875

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=94.99  E-value=0.19  Score=52.17  Aligned_cols=100  Identities=18%  Similarity=0.187  Sum_probs=71.1

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.-          -...+++.|+..|++|.++|+..........+                      +.
T Consensus       271 ~l~GktV~IiG~G~----------IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~----------------------Ga  318 (494)
T 3ce6_A          271 LIGGKKVLICGYGD----------VGKGCAEAMKGQGARVSVTEIDPINALQAMME----------------------GF  318 (494)
T ss_dssp             CCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHT----------------------TC
T ss_pred             CCCcCEEEEEccCH----------HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----------------------CC
Confidence            46899999999744          67889999999999999999975442222222                      12


Q ss_pred             eeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC---CChHHHh
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI---LDVEKLR  456 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~---~~~~~~~  456 (480)
                      .+ .+++++++++|+|+.+|.-+..  ++ .+..+.|++.++|++.-..   ++...+.
T Consensus       319 ~~-~~l~e~l~~aDvVi~atgt~~~--i~-~~~l~~mk~ggilvnvG~~~~eId~~aL~  373 (494)
T 3ce6_A          319 DV-VTVEEAIGDADIVVTATGNKDI--IM-LEHIKAMKDHAILGNIGHFDNEIDMAGLE  373 (494)
T ss_dssp             EE-CCHHHHGGGCSEEEECSSSSCS--BC-HHHHHHSCTTCEEEECSSSGGGBCHHHHH
T ss_pred             EE-ecHHHHHhCCCEEEECCCCHHH--HH-HHHHHhcCCCcEEEEeCCCCCccCHHHHH
Confidence            22 3677889999999999876653  33 3456778888899987652   4544443

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.96  E-value=0.034  Score=47.47  Aligned_cols=90  Identities=12%  Similarity=0.108  Sum_probs=63.5

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHH-HHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQ-IQRDLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      +++|+|+|...          .+..++..|.+.|++|.++|......+ +...++                    ..+..
T Consensus        21 ~~~v~iiG~G~----------iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~--------------------~~~~~   70 (144)
T 3oj0_A           21 GNKILLVGNGM----------LASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYE--------------------YEYVL   70 (144)
T ss_dssp             CCEEEEECCSH----------HHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHT--------------------CEEEE
T ss_pred             CCEEEEECCCH----------HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhC--------------------CceEe
Confidence            78999999754          778899999999999999998654322 122221                    12234


Q ss_pred             ecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC
Q 011654          403 VWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN  448 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~  448 (480)
                      .++++++++++|+|+.+|..+... ++.    +.+++..+|+|.-.
T Consensus        71 ~~~~~~~~~~~Divi~at~~~~~~-~~~----~~l~~g~~vid~~~  111 (144)
T 3oj0_A           71 INDIDSLIKNNDVIITATSSKTPI-VEE----RSLMPGKLFIDLGN  111 (144)
T ss_dssp             CSCHHHHHHTCSEEEECSCCSSCS-BCG----GGCCTTCEEEECCS
T ss_pred             ecCHHHHhcCCCEEEEeCCCCCcE-eeH----HHcCCCCEEEEccC
Confidence            568889999999999999976532 222    33455678999865

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=94.96  E-value=0.022  Score=56.30  Aligned_cols=78  Identities=19%  Similarity=0.209  Sum_probs=45.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCC-------CCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCE-EEec--
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCP-------KIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNL-FFST--   70 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~-------G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l-~~t~--   70 (480)
                      +||+|||+|.||..++..|.++ +       +.+|+ ++|+++++.+..         -.++++......+.+ .+++  
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~-~~~~~~g~~~~vvaV~d~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~   76 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSF-NEENRLGLKFNVVFVADSLHSYYNER---------IDIGKVISYKEKGSLDSLEYES   76 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-HHHCSSSEEEEEEEEECSSCEEECTT---------CCHHHHHHHHHTTCGGGCCSEE
T ss_pred             EeEEEEecCHHHHHHHHHHHhC-hHHHhcCCcEEEEEEEECChHHhhcc---------cChHHHhhhhccCCcccccCCC
Confidence            5799999999999999998764 1       24554 568776432210         011111110001112 1344  


Q ss_pred             -CHHHHh-ccCcEEEEeccCC
Q 011654           71 -DIEKHV-AEADIVFVSVNTP   89 (480)
Q Consensus        71 -d~~~a~-~~aDvVii~Vptp   89 (480)
                       |+++.+ .+.|+|++|+|+.
T Consensus        77 ~d~~~ll~~~iDvVv~~t~~~   97 (331)
T 3c8m_A           77 ISASEALARDFDIVVDATPAS   97 (331)
T ss_dssp             CCHHHHHHSSCSEEEECSCCC
T ss_pred             CCHHHHhCCCCCEEEECCCCC
Confidence             777755 3689999998763

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=94.94  E-value=0.064  Score=51.36  Aligned_cols=109  Identities=17%  Similarity=0.152  Sum_probs=72.2

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+++++|+|+|..          ..+..++..|.+.|++|.++|......   ..+..                  ..++
T Consensus       126 ~~~~~~v~iiGaG----------~~g~aia~~L~~~g~~V~v~~r~~~~~---~~l~~------------------~~g~  174 (275)
T 2hk9_A          126 EVKEKSILVLGAG----------GASRAVIYALVKEGAKVFLWNRTKEKA---IKLAQ------------------KFPL  174 (275)
T ss_dssp             TGGGSEEEEECCS----------HHHHHHHHHHHHHTCEEEEECSSHHHH---HHHTT------------------TSCE
T ss_pred             CcCCCEEEEECch----------HHHHHHHHHHHHcCCEEEEEECCHHHH---HHHHH------------------HcCC
Confidence            4578899999964          378889999999999999999864321   11210                  0123


Q ss_pred             eeecCHHHhcccccEEEEEecccccccccHHHH-HHhcCCCCEEEEcCCCCChH---HHhhcCcEE
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKI-FDNMRKPAYIFDGRNILDVE---KLREIGFIV  462 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~-~~~~~~~~~i~D~~~~~~~~---~~~~~g~~y  462 (480)
                      ...+++.++++++|+||.+|+-..+.+... .+ .+.+++..+|+|.-. ...+   ..++.|+++
T Consensus       175 ~~~~~~~~~~~~aDiVi~atp~~~~~~~~~-~i~~~~l~~g~~viDv~~-~~t~ll~~a~~~g~~~  238 (275)
T 2hk9_A          175 EVVNSPEEVIDKVQVIVNTTSVGLKDEDPE-IFNYDLIKKDHVVVDIIY-KETKLLKKAKEKGAKL  238 (275)
T ss_dssp             EECSCGGGTGGGCSEEEECSSTTSSTTCCC-SSCGGGCCTTSEEEESSS-SCCHHHHHHHHTTCEE
T ss_pred             eeehhHHhhhcCCCEEEEeCCCCCCCCCCC-CCCHHHcCCCCEEEEcCC-ChHHHHHHHHHCcCEE
Confidence            444577888899999999998876532110 01 234566679999988 4432   234557765

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=94.94  E-value=0.12  Score=49.84  Aligned_cols=82  Identities=15%  Similarity=0.110  Sum_probs=61.4

Q ss_pred             HHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCC
Q 011654          316 SSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPP  395 (480)
Q Consensus       316 ~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  395 (480)
                      +..+..+++++|.|+|-+-         .-..+++..|.+.|++|++.+-...                           
T Consensus       157 ~~~~i~l~Gk~vvVIG~s~---------iVG~p~A~lL~~~gAtVtv~~~~T~---------------------------  200 (300)
T 4a26_A          157 KRCGIEMAGKRAVVLGRSN---------IVGAPVAALLMKENATVTIVHSGTS---------------------------  200 (300)
T ss_dssp             HHHTCCCTTCEEEEECCCT---------TTHHHHHHHHHHTTCEEEEECTTSC---------------------------
T ss_pred             HHcCCCCCCCEEEEECCCc---------hHHHHHHHHHHHCCCeEEEEeCCCC---------------------------
Confidence            3344578999999999532         3578999999999999999875321                           


Q ss_pred             CCCceeeecCHH--HhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC
Q 011654          396 ASKQVNVVWDAY--QAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN  448 (480)
Q Consensus       396 ~~~~~~~~~~~~--~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~  448 (480)
                               +++  +.++.||+||.+|..+.|-.-+      .+++.++|||.--
T Consensus       201 ---------~l~l~~~~~~ADIVI~Avg~p~~I~~~------~vk~GavVIDvgi  240 (300)
T 4a26_A          201 ---------TEDMIDYLRTADIVIAAMGQPGYVKGE------WIKEGAAVVDVGT  240 (300)
T ss_dssp             ---------HHHHHHHHHTCSEEEECSCCTTCBCGG------GSCTTCEEEECCC
T ss_pred             ---------CchhhhhhccCCEEEECCCCCCCCcHH------hcCCCcEEEEEec
Confidence                     234  7899999999999998864322      2466779999853

>2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A*

Probab=94.93  E-value=0.023  Score=53.98  Aligned_cols=73  Identities=10%  Similarity=0.176  Sum_probs=46.9

Q ss_pred             EEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            3 KICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ||.|.|+ |.+|..++..|+++.+|++|+++++++++.+.+......+..            +.+.-..++.++++++|+
T Consensus         1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~------------~D~~d~~~~~~~~~~~d~   68 (286)
T 2zcu_A            1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQ------------ADYGDEAALTSALQGVEK   68 (286)
T ss_dssp             CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEE------------CCTTCHHHHHHHTTTCSE
T ss_pred             CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEE------------cCCCCHHHHHHHHhCCCE
Confidence            5889996 999999999998743379999999987765544321111100            111001224456778999


Q ss_pred             EEEecc
Q 011654           82 VFVSVN   87 (480)
Q Consensus        82 Vii~Vp   87 (480)
                      ||-+..
T Consensus        69 vi~~a~   74 (286)
T 2zcu_A           69 LLLISS   74 (286)
T ss_dssp             EEECC-
T ss_pred             EEEeCC
Confidence            998865

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=94.91  E-value=0.1  Score=45.02  Aligned_cols=115  Identities=11%  Similarity=-0.046  Sum_probs=67.3

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHH-hhhccccCCCCCCCCCCCCCCCCCc
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQR-DLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ...+.+|+|+|...          -+..+++.|.+.|++|.++|+.....+... .++   ..+            ...+
T Consensus        16 ~~~~~~v~IiG~G~----------iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g---~~~------------~~~d   70 (155)
T 2g1u_A           16 KQKSKYIVIFGCGR----------LGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFS---GFT------------VVGD   70 (155)
T ss_dssp             -CCCCEEEEECCSH----------HHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCC---SEE------------EESC
T ss_pred             ccCCCcEEEECCCH----------HHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCC---CcE------------EEec
Confidence            45678999999755          778999999999999999998643211100 000   000            0000


Q ss_pred             eeeecCHHHh-cccccEEEEEecccccccccHHHHHHh-cCCCCEEEEcCCCCChHHHhhcCcE
Q 011654          400 VNVVWDAYQA-AKDAHGVCILTEWDEFKTLDYQKIFDN-MRKPAYIFDGRNILDVEKLREIGFI  461 (480)
Q Consensus       400 ~~~~~~~~~a-~~~ad~vvi~t~h~~~~~~~~~~~~~~-~~~~~~i~D~~~~~~~~~~~~~g~~  461 (480)
                      ..-.+.+.++ ++++|+|+++|+.++.... ...+... .+...+|....+.-..+.+++.|..
T Consensus        71 ~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~~-~~~~~~~~~~~~~iv~~~~~~~~~~~l~~~G~~  133 (155)
T 2g1u_A           71 AAEFETLKECGMEKADMVFAFTNDDSTNFF-ISMNARYMFNVENVIARVYDPEKIKIFEENGIK  133 (155)
T ss_dssp             TTSHHHHHTTTGGGCSEEEECSSCHHHHHH-HHHHHHHTSCCSEEEEECSSGGGHHHHHTTTCE
T ss_pred             CCCHHHHHHcCcccCCEEEEEeCCcHHHHH-HHHHHHHHCCCCeEEEEECCHHHHHHHHHCCCc
Confidence            0000112333 6789999999998764332 2233333 3344577777776666666666654

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=94.90  E-value=0.099  Score=51.09  Aligned_cols=75  Identities=19%  Similarity=0.214  Sum_probs=52.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCC---HHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe--cCH---
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDIS---VSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS--TDI---   72 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~---~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t--~d~---   72 (480)
                      .++.|+|+|-+|.+++..|++.  |. +|++++|+   .++.+.+.+.           +-.. ....+.+.  .+.   
T Consensus       149 k~~lVlGAGGaaraia~~L~~~--G~~~v~v~nRt~~~~~~a~~la~~-----------~~~~-~~~~v~~~~~~~l~~~  214 (312)
T 3t4e_A          149 KTMVLLGAGGAATAIGAQAAIE--GIKEIKLFNRKDDFFEKAVAFAKR-----------VNEN-TDCVVTVTDLADQHAF  214 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCSEEEEEECSSTHHHHHHHHHHH-----------HHHH-SSCEEEEEETTCHHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHHc--CCCEEEEEECCCchHHHHHHHHHH-----------hhhc-cCcceEEechHhhhhh
Confidence            4789999999999999999998  77 89999999   8777776531           1000 00112222  232   


Q ss_pred             HHHhccCcEEEEeccCCC
Q 011654           73 EKHVAEADIVFVSVNTPT   90 (480)
Q Consensus        73 ~~a~~~aDvVii~Vptp~   90 (480)
                      .+.+.++|+||-|+|...
T Consensus       215 ~~~l~~~DiIINaTp~Gm  232 (312)
T 3t4e_A          215 TEALASADILTNGTKVGM  232 (312)
T ss_dssp             HHHHHHCSEEEECSSTTS
T ss_pred             HhhccCceEEEECCcCCC
Confidence            445788999999977543

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=94.88  E-value=0.025  Score=54.35  Aligned_cols=72  Identities=15%  Similarity=0.136  Sum_probs=47.7

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCC-CeEEEEeCCHHHH--HHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPK-IEVAVVDISVSRI--AAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G-~~V~~~D~~~~~v--~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      |+|.|.|+ |.+|..++..|++.  | ++|++.++++++.  +.+......+..            +.+.-..++.++++
T Consensus         6 ~~ilVtGatG~iG~~l~~~L~~~--g~~~V~~~~R~~~~~~~~~l~~~~~~~~~------------~D~~d~~~l~~~~~   71 (299)
T 2wm3_A            6 KLVVVFGGTGAQGGSVARTLLED--GTFKVRVVTRNPRKKAAKELRLQGAEVVQ------------GDQDDQVIMELALN   71 (299)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH--CSSEEEEEESCTTSHHHHHHHHTTCEEEE------------CCTTCHHHHHHHHT
T ss_pred             CEEEEECCCchHHHHHHHHHHhc--CCceEEEEEcCCCCHHHHHHHHCCCEEEE------------ecCCCHHHHHHHHh
Confidence            58999997 99999999999988  7 9999999987643  223221111000            11100123445678


Q ss_pred             cCcEEEEecc
Q 011654           78 EADIVFVSVN   87 (480)
Q Consensus        78 ~aDvVii~Vp   87 (480)
                      ++|+||.+.+
T Consensus        72 ~~d~vi~~a~   81 (299)
T 2wm3_A           72 GAYATFIVTN   81 (299)
T ss_dssp             TCSEEEECCC
T ss_pred             cCCEEEEeCC
Confidence            8999999864

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=94.87  E-value=0.083  Score=52.03  Aligned_cols=41  Identities=17%  Similarity=0.324  Sum_probs=31.1

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEe-C-CHHHHHHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVD-I-SVSRIAAW   42 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D-~-~~~~v~~l   42 (480)
                      |+||+|+|.|++|.-+.+.|..+ |..+|+++. . +++.+..+
T Consensus         1 ~ikVgI~G~G~iG~~l~R~l~~~-~~veiv~i~~~~~~~~~a~l   43 (330)
T 1gad_O            1 TIKVGINGFGRIGRIVFRAAQKR-SDIEIVAINDLLDADYMAYM   43 (330)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC-SSEEEEEEECSSCHHHHHHH
T ss_pred             CeEEEEECcCHHHHHHHHHHHcC-CCeEEEEEcCCCChhHHhHh
Confidence            57999999999999999988876 567877664 3 45554433

>3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum}

Probab=94.84  E-value=0.026  Score=59.22  Aligned_cols=36  Identities=19%  Similarity=0.203  Sum_probs=32.6

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSR   38 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~   38 (480)
                      +|||.|.| .|++|..++..|.+.  |++|+++++++..
T Consensus       147 ~m~VLVTGatG~IG~~l~~~L~~~--G~~V~~l~R~~~~  183 (516)
T 3oh8_A          147 PLTVAITGSRGLVGRALTAQLQTG--GHEVIQLVRKEPK  183 (516)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESSSCC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCCCC
Confidence            58999999 699999999999998  9999999998653

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=94.84  E-value=0.14  Score=43.83  Aligned_cols=108  Identities=17%  Similarity=0.154  Sum_probs=72.9

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      +.++|+|+|+|-++      ++.+..+++.|.+.|++|.--+|....+++                         .++..
T Consensus        12 ~p~~vaVvGas~~~------g~~G~~~~~~l~~~G~~v~~vnp~~~~~~i-------------------------~G~~~   60 (140)
T 1iuk_A           12 QAKTIAVLGAHKDP------SRPAHYVPRYLREQGYRVLPVNPRFQGEEL-------------------------FGEEA   60 (140)
T ss_dssp             HCCEEEEETCCSST------TSHHHHHHHHHHHTTCEEEEECGGGTTSEE-------------------------TTEEC
T ss_pred             CCCEEEEECCCCCC------CChHHHHHHHHHHCCCEEEEeCCCcccCcC-------------------------CCEEe
Confidence            36799999998776      578999999999999997777775211111                         23455


Q ss_pred             ecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH---HHhhcCcEEEE
Q 011654          403 VWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE---KLREIGFIVYS  464 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~~~~~g~~y~~  464 (480)
                      ..|+.+.-+..|+++|.+.-+.-.+. .+++.+. ....+++. .+....+   .+++.|+++.|
T Consensus        61 ~~sl~el~~~vDlavi~vp~~~~~~v-~~~~~~~-gi~~i~~~-~g~~~~~~~~~a~~~Gir~vg  122 (140)
T 1iuk_A           61 VASLLDLKEPVDILDVFRPPSALMDH-LPEVLAL-RPGLVWLQ-SGIRHPEFEKALKEAGIPVVA  122 (140)
T ss_dssp             BSSGGGCCSCCSEEEECSCHHHHTTT-HHHHHHH-CCSCEEEC-TTCCCHHHHHHHHHTTCCEEE
T ss_pred             cCCHHHCCCCCCEEEEEeCHHHHHHH-HHHHHHc-CCCEEEEc-CCcCHHHHHHHHHHcCCEEEc
Confidence            56788877789999999887554442 2344444 23345554 5666644   34467998876

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=94.82  E-value=0.17  Score=48.57  Aligned_cols=82  Identities=12%  Similarity=0.060  Sum_probs=61.6

Q ss_pred             HHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCC
Q 011654          315 VSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSP  394 (480)
Q Consensus       315 ~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  394 (480)
                      ++..+-++++++|.|+|-+-         .-..+++..|...|++|++.+-.                            
T Consensus       152 L~~~~i~l~Gk~vvVvGrs~---------iVG~plA~lL~~~gAtVtv~hs~----------------------------  194 (286)
T 4a5o_A          152 LASTGADLYGMDAVVVGASN---------IVGRPMALELLLGGCTVTVTHRF----------------------------  194 (286)
T ss_dssp             HHHTTCCCTTCEEEEECTTS---------TTHHHHHHHHHHTTCEEEEECTT----------------------------
T ss_pred             HHHhCCCCCCCEEEEECCCc---------hhHHHHHHHHHHCCCeEEEEeCC----------------------------
Confidence            33344578999999999532         35788999999999999986432                            


Q ss_pred             CCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          395 PASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       395 ~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                              ..++++.++.||+||.++..+.|-  +.++    .++.++|||.-
T Consensus       195 --------T~~L~~~~~~ADIVI~Avg~p~~I--~~~~----vk~GavVIDvg  233 (286)
T 4a5o_A          195 --------TRDLADHVSRADLVVVAAGKPGLV--KGEW----IKEGAIVIDVG  233 (286)
T ss_dssp             --------CSCHHHHHHTCSEEEECCCCTTCB--CGGG----SCTTCEEEECC
T ss_pred             --------CcCHHHHhccCCEEEECCCCCCCC--CHHH----cCCCeEEEEec
Confidence                    125678899999999999998773  3322    36667999975

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=94.81  E-value=0.023  Score=50.15  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=31.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      |++|.|||.|..|+.+|..|++.  |.+|+++++++
T Consensus         1 ~~~vvIIGgG~~Gl~~A~~l~~~--g~~v~lie~~~   34 (180)
T 2ywl_A            1 MWDVIVVGGGPSGLSAALFLARA--GLKVLVLDGGR   34 (180)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHT--TCCEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            57899999999999999999998  99999999865

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=94.74  E-value=0.11  Score=51.24  Aligned_cols=42  Identities=21%  Similarity=0.380  Sum_probs=31.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcC-CCCeEEEEe-C-CHHHHHHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKC-PKIEVAVVD-I-SVSRIAAWN   43 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~-~G~~V~~~D-~-~~~~v~~l~   43 (480)
                      +||+|+|.|++|.-+.+.|..+. |.++|+.+. + +++....+-
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll   45 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLL   45 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHH
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhc
Confidence            48999999999999999888752 468887654 3 555555443

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=94.73  E-value=0.14  Score=50.60  Aligned_cols=41  Identities=17%  Similarity=0.347  Sum_probs=31.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHH---cCCCCeEEEEe-C-CHHHHHHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIAL---KCPKIEVAVVD-I-SVSRIAAWN   43 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~---~~~G~~V~~~D-~-~~~~v~~l~   43 (480)
                      +||+|+|.|++|..+...|..   + |.++|+++. + +++....+-
T Consensus         3 ikVgI~G~G~iGr~l~r~l~~~~~~-~~~eivai~~~~~~~~~~~ll   48 (339)
T 2x5j_O            3 VRVAINGFGRIGRNVVRALYESGRR-AEITVVAINELADAAGMAHLL   48 (339)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTSGG-GTEEEEEEECSSCHHHHHHHH
T ss_pred             eEEEEECcCHHHHHHHHHHHcCCCC-CCEEEEEEeCCCCHHHHHHHh
Confidence            699999999999999999887   5 467877654 3 556555544

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=94.71  E-value=0.068  Score=55.53  Aligned_cols=108  Identities=14%  Similarity=0.162  Sum_probs=68.4

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhC--CCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCC-----CC
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGD--KAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPP-----AS  397 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~--g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~  397 (480)
                      .+|+|+|+.|          ....++..|.+.  |.+|.+||..-...+   .+....    .|+. .+....     ..
T Consensus        10 mkI~VIG~G~----------vG~~~A~~La~~g~g~~V~~~D~~~~~v~---~l~~g~----~~i~-e~gl~~~~~~~~~   71 (481)
T 2o3j_A           10 SKVVCVGAGY----------VGGPTCAMIAHKCPHITVTVVDMNTAKIA---EWNSDK----LPIY-EPGLDEIVFAARG   71 (481)
T ss_dssp             CEEEEECCST----------THHHHHHHHHHHCTTSEEEEECSCHHHHH---HHTSSS----CSSC-CTTHHHHHHHHBT
T ss_pred             CEEEEECCCH----------HHHHHHHHHHhcCCCCEEEEEECCHHHHH---HHHCCC----CCcC-CCCHHHHHHHhhc
Confidence            5899999988          889999999988  799999997533221   221100    0110 000000     01


Q ss_pred             CceeeecCHHHhcccccEEEEEeccccc-------cccc-------HHHHHHhcCCCCEEEEcCCCC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEF-------KTLD-------YQKIFDNMRKPAYIFDGRNIL  450 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~-------~~~~-------~~~~~~~~~~~~~i~D~~~~~  450 (480)
                      .++..++++.++++++|+|+++++-+.-       +..|       .+.+...+++..+|+|...+.
T Consensus        72 ~~l~~t~~~~~~~~~aDvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~  138 (481)
T 2o3j_A           72 RNLFFSSDIPKAIAEADLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVP  138 (481)
T ss_dssp             TTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCC
T ss_pred             CCEEEECCHHHHhhcCCEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            2467778888999999999999766531       1122       245666777777999976544

>3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A

Probab=94.71  E-value=0.12  Score=51.25  Aligned_cols=32  Identities=22%  Similarity=0.272  Sum_probs=29.8

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCC-eEEEEeCC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKI-EVAVVDIS   35 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~-~V~~~D~~   35 (480)
                      |||.|.| .|.+|..++..|++.  |+ +|+..|++
T Consensus         1 M~VlVtGatG~iG~~l~~~L~~~--g~~~v~~~d~~   34 (369)
T 3st7_A            1 MNIVITGAKGFVGKNLKADLTST--TDHHIFEVHRQ   34 (369)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH--CCCEEEECCTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC--CCCEEEEECCC
Confidence            8999999 699999999999998  88 99999984

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=94.71  E-value=0.095  Score=53.12  Aligned_cols=130  Identities=12%  Similarity=0.050  Sum_probs=74.6

Q ss_pred             CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce-
Q 011654          322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV-  400 (480)
Q Consensus       322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  400 (480)
                      +.+++|+|+|..          .-++.+++.+...|++|.++|+.....+....++.   .+-.... .... ....+. 
T Consensus       170 l~g~~V~ViGaG----------~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa---~~~~~~~-~~~~-~~~~g~~  234 (401)
T 1x13_A          170 VPPAKVMVIGAG----------VAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGA---EFLELDF-KEEA-GSGDGYA  234 (401)
T ss_dssp             ECCCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTC---EECCC----------CCHHH
T ss_pred             cCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCC---EEEEecc-cccc-cccccch
Confidence            578999999963          36888999999999999999997654332233321   0000000 0000 000000 


Q ss_pred             ---e------eecCHHHhcccccEEEEEecccc--cccccHHHHHHhcCCCCEEEEcCC----CCCh---H--HHhhcCc
Q 011654          401 ---N------VVWDAYQAAKDAHGVCILTEWDE--FKTLDYQKIFDNMRKPAYIFDGRN----ILDV---E--KLREIGF  460 (480)
Q Consensus       401 ---~------~~~~~~~a~~~ad~vvi~t~h~~--~~~~~~~~~~~~~~~~~~i~D~~~----~~~~---~--~~~~~g~  460 (480)
                         .      +..++.+.++++|+|+..+.+|.  -..+-..+..+.|++..+|+|.-.    .++.   .  .+...|+
T Consensus       235 ~~~~~~~~~~~~~~l~e~~~~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~~~~~~p~~~~~gv  314 (401)
T 1x13_A          235 KVMSDAFIKAEMELFAAQAKEVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGV  314 (401)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTSEEECTTSC
T ss_pred             hhccHHHHHHHHHHHHHHhCCCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCcccCCCceEEECCE
Confidence               0      00135677889999999865652  112212345577998889999962    2332   1  1445677


Q ss_pred             EEEEec
Q 011654          461 IVYSIG  466 (480)
Q Consensus       461 ~y~~iG  466 (480)
                      .++|+-
T Consensus       315 ~i~g~~  320 (401)
T 1x13_A          315 KVIGYT  320 (401)
T ss_dssp             EEECCS
T ss_pred             EEEeeC
Confidence            777654

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=94.69  E-value=0.44  Score=42.65  Aligned_cols=114  Identities=14%  Similarity=0.154  Sum_probs=69.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-ecCHHHH---hc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-STDIEKH---VA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t~d~~~a---~~   77 (480)
                      .+|.-||+|. |. ++..+++.+++.+|+++|++++.++..++..            ......++++ ..|..+.   ..
T Consensus        42 ~~vLDiG~G~-G~-~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~------------~~~~~~~v~~~~~d~~~~~~~~~  107 (204)
T 3e05_A           42 LVMWDIGAGS-AS-VSIEASNLMPNGRIFALERNPQYLGFIRDNL------------KKFVARNVTLVEAFAPEGLDDLP  107 (204)
T ss_dssp             CEEEEETCTT-CH-HHHHHHHHCTTSEEEEEECCHHHHHHHHHHH------------HHHTCTTEEEEECCTTTTCTTSC
T ss_pred             CEEEEECCCC-CH-HHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH------------HHhCCCcEEEEeCChhhhhhcCC
Confidence            3688999996 44 4555666644589999999999888776420            0000023332 2233221   24


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~  145 (480)
                      ..|+|++.-+..            +   ....++.+.+.++++..++.. +....+.+.+.+.+++.+
T Consensus       108 ~~D~i~~~~~~~------------~---~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~~~~~l~~~g  159 (204)
T 3e05_A          108 DPDRVFIGGSGG------------M---LEEIIDAVDRRLKSEGVIVLN-AVTLDTLTKAVEFLEDHG  159 (204)
T ss_dssp             CCSEEEESCCTT------------C---HHHHHHHHHHHCCTTCEEEEE-ECBHHHHHHHHHHHHHTT
T ss_pred             CCCEEEECCCCc------------C---HHHHHHHHHHhcCCCeEEEEE-ecccccHHHHHHHHHHCC
Confidence            689988774321            1   356788888899988777653 233345556666776654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.67  E-value=0.1  Score=50.57  Aligned_cols=105  Identities=11%  Similarity=0.090  Sum_probs=67.2

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      -.++|+|+|+.-          ..-.++..|. +|++|.+||+.....+...+.    +           ......+++.
T Consensus        11 ~~~~V~vIG~G~----------MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~----l-----------~~~~~~~i~~   64 (293)
T 1zej_A           11 HHMKVFVIGAGL----------MGRGIAIAIA-SKHEVVLQDVSEKALEAAREQ----I-----------PEELLSKIEF   64 (293)
T ss_dssp             -CCEEEEECCSH----------HHHHHHHHHH-TTSEEEEECSCHHHHHHHHHH----S-----------CGGGGGGEEE
T ss_pred             CCCeEEEEeeCH----------HHHHHHHHHH-cCCEEEEEECCHHHHHHHHHH----H-----------HHHHhCCeEE
Confidence            468999999854          8899999999 999999999865432221111    0           0011135677


Q ss_pred             ecCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCCCCChHHHh
Q 011654          403 VWDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRNILDVEKLR  456 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~  456 (480)
                      .+++.+ +++||.||.++.-+. .+..-+.++...  +.+++.+..+.+++..+.
T Consensus        65 ~~~~~~-~~~aDlVieavpe~~~vk~~l~~~l~~~--~~~IlasntSti~~~~~a  116 (293)
T 1zej_A           65 TTTLEK-VKDCDIVMEAVFEDLNTKVEVLREVERL--TNAPLCSNTSVISVDDIA  116 (293)
T ss_dssp             ESSCTT-GGGCSEEEECCCSCHHHHHHHHHHHHTT--CCSCEEECCSSSCHHHHH
T ss_pred             eCCHHH-HcCCCEEEEcCcCCHHHHHHHHHHHhcC--CCCEEEEECCCcCHHHHH
Confidence            788876 899999999886644 232223344443  444665655557766554

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=94.63  E-value=0.065  Score=52.39  Aligned_cols=104  Identities=17%  Similarity=0.228  Sum_probs=65.6

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec-
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW-  404 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  404 (480)
                      ||+|+|+..          ....++..|.+.|.+|.+||....++.. ..+...+.   .+...     .....+...+ 
T Consensus         2 ~I~iiG~G~----------mG~~~a~~L~~~g~~V~~~~r~~~~~~~-~~~~~~~~---~~~~g-----~~~~~~~~~~~   62 (335)
T 1txg_A            2 IVSILGAGA----------MGSALSVPLVDNGNEVRIWGTEFDTEIL-KSISAGRE---HPRLG-----VKLNGVEIFWP   62 (335)
T ss_dssp             EEEEESCCH----------HHHHHHHHHHHHCCEEEEECCGGGHHHH-HHHHTTCC---BTTTT-----BCCCSEEEECG
T ss_pred             EEEEECcCH----------HHHHHHHHHHhCCCeEEEEEccCCHHHH-HHHHHhCc---CcccC-----ccccceEEecH
Confidence            799999855          8889999999999999999983222222 11111000   00000     0002234555 


Q ss_pred             -CHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCC
Q 011654          405 -DAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNIL  450 (480)
Q Consensus       405 -~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~  450 (480)
                       ++.++++++|+|+++++.+...++ .+.+.. +++..+|+|..|-+
T Consensus        63 ~~~~~~~~~~D~vi~~v~~~~~~~v-~~~i~~-l~~~~~vv~~~ng~  107 (335)
T 1txg_A           63 EQLEKCLENAEVVLLGVSTDGVLPV-MSRILP-YLKDQYIVLISKGL  107 (335)
T ss_dssp             GGHHHHHTTCSEEEECSCGGGHHHH-HHHHTT-TCCSCEEEECCCSE
T ss_pred             HhHHHHHhcCCEEEEcCChHHHHHH-HHHHhc-CCCCCEEEEEcCcC
Confidence             777889999999999988765442 244555 66556899998655

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=94.63  E-value=0.085  Score=49.70  Aligned_cols=95  Identities=15%  Similarity=0.114  Sum_probs=63.9

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDK-AKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      +|+|+|...          ....++..|.+.| .+|.+||+.....+.....                     .++....
T Consensus         2 ~i~iiG~G~----------mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~---------------------~g~~~~~   50 (263)
T 1yqg_A            2 NVYFLGGGN----------MAAAVAGGLVKQGGYRIYIANRGAEKRERLEKE---------------------LGVETSA   50 (263)
T ss_dssp             EEEEECCSH----------HHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHH---------------------TCCEEES
T ss_pred             EEEEECchH----------HHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHh---------------------cCCEEeC
Confidence            799999754          7889999999999 9999999864322211110                     1244556


Q ss_pred             CHHHhcccccEEEEEecccccccccHHHHHHhcCC-CCEEEEcCCCCChHHHhh
Q 011654          405 DAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRK-PAYIFDGRNILDVEKLRE  457 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~-~~~i~D~~~~~~~~~~~~  457 (480)
                      +..+++ ++|+|++++.....     ..+...+.+ ..+|+|..+-++.+.+.+
T Consensus        51 ~~~~~~-~~D~vi~~v~~~~~-----~~v~~~l~~~~~ivv~~~~g~~~~~l~~   98 (263)
T 1yqg_A           51 TLPELH-SDDVLILAVKPQDM-----EAACKNIRTNGALVLSVAAGLSVGTLSR   98 (263)
T ss_dssp             SCCCCC-TTSEEEECSCHHHH-----HHHHTTCCCTTCEEEECCTTCCHHHHHH
T ss_pred             CHHHHh-cCCEEEEEeCchhH-----HHHHHHhccCCCEEEEecCCCCHHHHHH
Confidence            777888 99999999983322     233333321 458999977777766553

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=94.61  E-value=0.24  Score=47.29  Aligned_cols=76  Identities=11%  Similarity=0.064  Sum_probs=59.1

Q ss_pred             CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCcee
Q 011654          322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVN  401 (480)
Q Consensus       322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (480)
                      +++++|.|+|-+-         .-..+++..|.+.|++|++.+-..                                  
T Consensus       148 l~Gk~vvVvG~s~---------iVG~plA~lL~~~gAtVtv~~~~t----------------------------------  184 (276)
T 3ngx_A          148 YHENTVTIVNRSP---------VVGRPLSMMLLNRNYTVSVCHSKT----------------------------------  184 (276)
T ss_dssp             CCSCEEEEECCCT---------TTHHHHHHHHHHTTCEEEEECTTC----------------------------------
T ss_pred             cCCCEEEEEcCCh---------HHHHHHHHHHHHCCCeEEEEeCCc----------------------------------
Confidence            7999999999531         357889999999999999986321                                  


Q ss_pred             eecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCC
Q 011654          402 VVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRN  448 (480)
Q Consensus       402 ~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~  448 (480)
                        .++.+.++.||+||.+|..+.+-.-+      ..++.++|||.--
T Consensus       185 --~~L~~~~~~ADIVI~Avg~p~~I~~~------~vk~GavVIDvgi  223 (276)
T 3ngx_A          185 --KDIGSMTRSSKIVVVAVGRPGFLNRE------MVTPGSVVIDVGI  223 (276)
T ss_dssp             --SCHHHHHHHSSEEEECSSCTTCBCGG------GCCTTCEEEECCC
T ss_pred             --ccHHHhhccCCEEEECCCCCccccHh------hccCCcEEEEecc
Confidence              35678899999999999998764323      2366679999853

>3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum}

Probab=94.61  E-value=0.088  Score=51.77  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=26.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHc-----CCCCeEEE-EeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALK-----CPKIEVAV-VDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~-----~~G~~V~~-~D~~~   36 (480)
                      +||+|||+|.||..++..|.++     +++.+|++ .|+++
T Consensus         5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~   45 (325)
T 3ing_A            5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRS   45 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSB
T ss_pred             EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecCh
Confidence            4799999999999999999763     13556654 56654

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.61  E-value=0.067  Score=55.36  Aligned_cols=109  Identities=17%  Similarity=0.141  Sum_probs=69.8

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhC--CCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCC-----CCC
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGD--KAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSP-----PAS  397 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~--g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~  397 (480)
                      .+|+|+|+.|          ....++..|.+.  |.+|.+||......+   .+....    -|+. .+...     ...
T Consensus         6 mkI~VIG~G~----------mG~~lA~~La~~g~G~~V~~~d~~~~~~~---~l~~g~----~~i~-e~~l~~~~~~~~~   67 (467)
T 2q3e_A            6 KKICCIGAGY----------VGGPTCSVIAHMCPEIRVTVVDVNESRIN---AWNSPT----LPIY-EPGLKEVVESCRG   67 (467)
T ss_dssp             CEEEEECCST----------THHHHHHHHHHHCTTSEEEEECSCHHHHH---HHTSSS----CSSC-CTTHHHHHHHHBT
T ss_pred             cEEEEECCCH----------HHHHHHHHHHhcCCCCEEEEEECCHHHHH---HHhCCC----CCcC-CCCHHHHHHHhhc
Confidence            5899999988          889999999998  899999998643222   111000    0110 00000     001


Q ss_pred             CceeeecCHHHhcccccEEEEEecccc-cc------ccc-------HHHHHHhcCCCCEEEEcCCCCC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDE-FK------TLD-------YQKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~-~~------~~~-------~~~~~~~~~~~~~i~D~~~~~~  451 (480)
                      .++..++++.++++++|+|++++..+. .+      ..|       .+.+...+++..+|+|...+..
T Consensus        68 ~~~~~t~~~~e~~~~aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~  135 (467)
T 2q3e_A           68 KNLFFSTNIDDAIKEADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPV  135 (467)
T ss_dssp             TTEEEESCHHHHHHHCSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCT
T ss_pred             CCEEEECCHHHHHhcCCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCc
Confidence            246777888999999999999986544 11      122       2356666777678999876554

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=94.60  E-value=0.023  Score=55.88  Aligned_cols=34  Identities=26%  Similarity=0.362  Sum_probs=31.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHH---cCCCCeEEEEeCCH
Q 011654            1 MVKICCIGAGYVGGPTMAVIAL---KCPKIEVAVVDISV   36 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~---~~~G~~V~~~D~~~   36 (480)
                      |++|.|||.|..|+.+|..|++   .  |++|+++|+++
T Consensus         1 m~dV~IIGaG~aGl~~A~~L~~~~~~--G~~V~v~Ek~~   37 (342)
T 3qj4_A            1 MAQVLIVGAGMTGSLCAALLRRQTSG--PLYLAVWDKAD   37 (342)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHSCC-C--CEEEEEECSSS
T ss_pred             CCcEEEECCcHHHHHHHHHHHhhccC--CceEEEEECCC
Confidence            6789999999999999999998   7  99999999854

>2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A*

Probab=94.57  E-value=0.015  Score=58.29  Aligned_cols=35  Identities=20%  Similarity=0.235  Sum_probs=31.9

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      ||+|.|.|+ |.+|..++..|++.  |++|++++++++
T Consensus        29 ~~~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r~~~   64 (379)
T 2c5a_A           29 NLKISITGAGGFIASHIARRLKHE--GHYVIASDWKKN   64 (379)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCC
T ss_pred             CCeEEEECCccHHHHHHHHHHHHC--CCeEEEEECCCc
Confidence            579999997 99999999999998  999999999754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	480
d1mv8a3	136	c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase,	1e-22
d1mv8a2	202	c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pse	2e-21
d1dlja1	98	a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (U	4e-19
d1dlja2	196	c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGD	3e-18
d1bg6a2	184	c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvalin	4e-18
d1mv8a1	98	a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase,	1e-14
d1dlja3	108	c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UD	6e-08

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 136

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 91.4 bits (226), Expect = 1e-22
 Identities = 22/153 (14%), Positives = 52/153 (33%), Gaps = 17/153 (11%)

Query: 311 VNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTED 370
           V +    +  +   +K+ +LG +FK  T D RE+P +++ + L+G   +L I+D  V   
Sbjct: 1   VQKAFD-LITSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYA 59

Query: 371 QIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDY 430
           ++              +              +V D  +    +  + +    + F     
Sbjct: 60  RVHGANKEYIESKIPHVS-----------SLLVSDLDEVVASSDVLVLGNGDELFV---- 104

Query: 431 QKIFDNMRKPAYIFDGRNILDVEKLREIGFIVY 463
             + +       + D    +      +   I +
Sbjct: 105 -DLVNKTPSGKKLVDLVGFMPHTTTAQAEGICW 136

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 202

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 90.1 bits (222), Expect = 2e-21
 Identities = 53/209 (25%), Positives = 88/209 (42%), Gaps = 13/209 (6%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-C 61
           +I   G GYVG      ++ +    EV  VD+S ++I   N  + PI EPGLE ++ Q  
Sbjct: 2   RISIFGLGYVGAVCAGCLSARG--HEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGR 59

Query: 62  RGRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNK 121
           +   L  +TD +K V ++D+ F+ V      +          T        I   S  + 
Sbjct: 60  QTGRLSGTTDFKKAVLDSDVSFICVG-TPSKKNGDLDLGYIETVCREIGFAIREKSERHT 118

Query: 122 IVVEKSTVPVKTAEAIEKILTHNSREIKYQ---ILSNPEFLAEGTAIQDLFNPDRVLIGG 178
           +VV  + +P      +  ++   S +       + +NPEFL E TAI+D   P   +IG 
Sbjct: 119 VVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDFPPMTVIGE 178

Query: 179 RETPEGQKAIQALKDVYAHWVPEDRIITT 207
                 ++    L+++Y        II  
Sbjct: 179 ----LDKQTGDLLEEIYRELDAP--IIRK 201

>d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} Length = 98

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
domain: UDP-glucose dehydrogenase (UDPGDH), middle domain
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 80.1 bits (197), Expect = 4e-19
 Identities = 27/100 (27%), Positives = 44/100 (44%), Gaps = 4/100 (4%)

Query: 210 WSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFG 269
             AE  KL AN +LA R++  N +    E+   +   +   I  D RIG  + N S G+G
Sbjct: 2   SEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYG 61

Query: 270 GSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQKNR 309
           G    KD   L+     N +       + ++  N+ +K+ 
Sbjct: 62  GYSLPKDTKQLLA--NYNNIP--QTLIEAIVSSNNVRKSY 97

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} Length = 196

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 80.8 bits (198), Expect = 3e-18
 Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 17/204 (8%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
           KI   G+GYVG     +++L+    EV +VDI  S++   N    PI +  +E  +   +
Sbjct: 2   KIAVAGSGYVGLSLGVLLSLQN---EVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQ 58

Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
                    ++   A  +   V + TPT           D  + E+  + + +V NS+  
Sbjct: 59  L---SIKATLDSKAAYKEAELVIIATPTNYN--SRINYFDTQHVETVIKEVLSV-NSHAT 112

Query: 123 VVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRE-- 180
           ++ KST+P+     + +      +    +I+ +PEFL E  A+ D   P R+++   E  
Sbjct: 113 LIIKSTIPIGFITEMRQ------KFQTDRIIFSPEFLRESKALYDNLYPSRIIVSCEEND 166

Query: 181 TPEGQKAIQALKDVYAHWVPEDRI 204
           +P+ +   +    +      ++ +
Sbjct: 167 SPKVKADAEKFALLLKSAAKKNNV 190

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

 Score = 80.0 bits (196), Expect = 4e-18
 Identities = 31/203 (15%), Positives = 60/203 (29%), Gaps = 24/203 (11%)

Query: 3   KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCR 62
               +G G  G    A +ALK     V   DI   RI         I     E       
Sbjct: 3   TYAVLGLGNGGHAFAAYLALKG--QSVLAWDIDAQRIKEIQDRGAII----AEGPGLAGT 56

Query: 63  GRNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKI 122
                 ++DI   V +AD++ + V                  +  S A  IA+  +  ++
Sbjct: 57  AHPDLLTSDIGLAVKDADVILIVVPAI---------------HHASIAANIASYISEGQL 101

Query: 123 VVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAE---GTAIQDLFNPDRVLIGGR 179
           ++          E  + +  + + E+     S+  F         +        +     
Sbjct: 102 IILNPGATGGALEFRKILRENGAPEVTIGETSSMLFTCRSERPGQVTVNAIKGAMDFACL 161

Query: 180 ETPEGQKAIQALKDVYAHWVPED 202
              +   A++ +  V   +V  +
Sbjct: 162 PAAKAGWALEQIGSVLPQYVAVE 184

>d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} Length = 98

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
domain: GDP-mannose 6-dehydrogenase, middle domain
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 67.5 bits (164), Expect = 1e-14
 Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 211 SAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGP--RFLNSSVGF 268
            AE+ K   N + A +++  N +  + +A G D  +V   I +D ++     ++     F
Sbjct: 3   VAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAF 62

Query: 269 GGSCFQKDILNLVYICECNGLTEVANYWKQVIKVNDYQ 306
           GGSC  KD+  L Y      +         +++ N  Q
Sbjct: 63  GGSCLPKDVRALTYRASQLDVE--HPMLGSLMRSNSNQ 98

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} Length = 108

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 48.3 bits (115), Expect = 6e-08
 Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 312 NRIVSSMFNTVSG-KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTED 370
            +I++ +    S  K + +     K ++ + RE+   DV   L     K+ IY+P + + 
Sbjct: 2   KQIINVLKEQESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKL 61

Query: 371 QI 372
           + 
Sbjct: 62  ES 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	480
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	100.0
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	99.95
d1mv8a1	98	GDP-mannose 6-dehydrogenase, middle domain {Pseudo	99.91
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	99.91
d1dlja1	98	UDP-glucose dehydrogenase (UDPGDH), middle domain	99.9
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.88
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.84
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	99.8
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	99.79
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	99.77
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.75
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	99.7
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	99.67
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	99.66
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	99.64
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	99.59
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	99.54
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	99.52
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	99.51
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	99.45
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	99.43
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	99.43
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	99.36
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	99.16
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	99.06
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	98.89
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	98.82
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	98.74
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	98.71
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	98.71
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	98.71
d1vpda1	133	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	98.69
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	98.68
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	98.65
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	98.62
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	98.6
d3cuma1	134	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	98.56
d2cvza1	132	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	98.54
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	98.5
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	98.42
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	98.4
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	98.4
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	98.34
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	98.33
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	98.31
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	98.3
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	98.22
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	98.19
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	98.19
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	98.16
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	98.15
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	98.15
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	98.14
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	98.14
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	98.13
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	98.12
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	98.12
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	98.05
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	98.04
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.99
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	97.98
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	97.96
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	97.96
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	97.95
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.93
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	97.92
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	97.89
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.82
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	97.81
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	97.79
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	97.75
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.74
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	97.71
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	97.67
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	97.64
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	97.62
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	97.57
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.57
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	97.54
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	97.51
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	97.5
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	97.49
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	97.48
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	97.44
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	97.41
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.35
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	97.33
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	97.31
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	97.31
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.27
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	97.27
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	97.24
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.23
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.21
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	97.19
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	97.09
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.08
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.07
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	97.02
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	96.99
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.98
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	96.97
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	96.86
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.78
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	96.76
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	96.76
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	96.7
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	96.69
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	96.66
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	96.48
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	96.46
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.45
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	96.39
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	96.39
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.38
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	96.29
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	96.28
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	96.28
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.24
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.21
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	96.16
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.12
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	96.1
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	96.09
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	96.07
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.02
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	96.0
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	95.99
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.89
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.87
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.83
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	95.8
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	95.79
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	95.74
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	95.74
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	95.69
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.68
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	95.66
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	95.66
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	95.6
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	95.51
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.49
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.49
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.49
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.44
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	95.44
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	95.37
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	95.36
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	95.36
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	95.36
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	95.34
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	95.34
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	95.33
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	95.33
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.32
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	95.31
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	95.24
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	95.19
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.18
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	95.15
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	95.14
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.12
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	95.06
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	94.99
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	94.94
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	94.9
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	94.87
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.85
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	94.83
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.81
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	94.81
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	94.76
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	94.75
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	94.73
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	94.73
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.71
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.63
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	94.6
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	94.58
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.49
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	94.48
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	94.48
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	94.46
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	94.44
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.43
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	94.39
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	94.37
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	94.32
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	94.31
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	94.28
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	94.26
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	94.21
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	94.2
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	94.13
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.07
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	94.06
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	94.04
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	94.03
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	93.98
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	93.94
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	93.88
d2blla1	342	Polymyxin resistance protein ArnA (PrmI) {Escheric	93.8
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.71
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	93.7
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	93.69
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	93.68
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.68
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	93.67
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.63
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	93.63
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	93.61
d1y1pa1	342	Aldehyde reductase II {Sporobolomyces salmonicolor	93.57
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.54
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	93.35
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	93.26
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	93.25
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	93.19
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	93.11
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	93.04
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	93.03
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	92.92
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.68
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	92.62
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	92.57
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	92.51
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	92.5
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	92.46
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	92.39
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	92.37
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	92.37
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	92.32
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	92.27
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.26
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	92.26
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	92.24
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	92.2
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	92.15
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	92.06
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.02
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	92.01
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	91.71
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	91.71
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	91.29
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	91.14
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	91.11
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	91.11
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	91.11
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	90.99
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	90.97
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	90.88
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	90.86
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	90.85
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	90.85
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	90.82
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.81
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	90.8
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	90.77
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	90.75
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	90.73
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	90.73
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	90.59
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	90.55
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	90.53
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	90.43
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	90.41
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	90.35
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	90.23
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	90.18
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.13
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	90.12
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	90.07
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	90.05
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	90.02
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.01
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	90.0
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	89.94
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	89.88
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	89.87
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	89.72
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	89.71
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	89.64
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	89.61
d1oc2a_	346	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	89.55
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	89.42
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	89.37
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	89.3
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	89.29
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	89.23
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	89.21
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	89.17
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.07
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	88.99
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	88.92
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	88.79
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	88.75
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	88.7
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	88.64
d1oaaa_	259	Sepiapterin reductase {Mouse (Mus musculus) [TaxId	88.64
d2bd0a1	240	Bacterial sepiapterin reductase {Chlorobium tepidu	88.62
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	88.27
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	88.07
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	87.97
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	87.93
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	87.91
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	87.85
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	87.81
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	87.74
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	87.65
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	87.31
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	87.28
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	87.24
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	87.12
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	87.01
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	86.84
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	86.78
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	86.44
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	86.43
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	86.32
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	86.15
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	86.14
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	86.09
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	86.07
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	85.97
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	85.95
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	85.93
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	85.92
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	85.68
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	85.65
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	85.54
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	85.44
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	85.41
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	85.39
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	85.38
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	85.32
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	85.31
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	85.2
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	85.1
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	85.04
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	85.02
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	85.0
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	84.96
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	84.91
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	84.76
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	84.64
d1z45a2	347	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.58
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	84.57
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	84.36
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.35
d1gy8a_	383	Uridine diphosphogalactose-4-epimerase (UDP-galact	84.26
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	84.25
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	84.22
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	84.21
d1sb8a_	341	UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo	84.09
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	83.83
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	83.77
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	83.47
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	83.41
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	83.35
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	83.08
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	82.99
d1kewa_	361	dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus	82.9
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	82.7
d1t2aa_	347	GDP-mannose 4,6-dehydratase {Human (Homo sapiens)	82.44
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	82.32
d1orra_	338	CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId:	82.26
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	82.13
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	82.02
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	81.99
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	81.94
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	81.85
d1n7ha_	339	GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop	81.83
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	81.82
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	81.67
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	81.58
d1edoa_	244	beta-keto acyl carrier protein reductase {Oil seed	81.29
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	81.28
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	80.93
d1e7wa_	284	Dihydropteridin reductase (pteridine reductase) {L	80.87
d1w5fa1	194	Cell-division protein FtsZ {Thermotoga maritima [T	80.84
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	80.58
d1mxha_	266	Dihydropteridin reductase (pteridine reductase) {T	80.48
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	80.14
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	80.11
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	80.08

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=100.00  E-value=5.8e-34  Score=264.44  Aligned_cols=187  Identities=33%  Similarity=0.485  Sum_probs=167.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|++|+++|..|+++  ||+|++||.|+++++.|++|..|++|+++.+++.. ...+++.++++..+++.+||
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~--g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d   78 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSAR--GHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD   78 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred             CEEEEECCCHhHHHHHHHHHhC--CCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCC
Confidence            8999999999999999999998  99999999999999999999999999999998864 55678999999999999999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhC---CCCCEEEEecCCccchHHHH-HHHHHhcCC---CCceeEe
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVS---NSNKIVVEKSTVPVKTAEAI-EKILTHNSR---EIKYQIL  153 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l---~~~~iVi~~STv~~gt~~~l-~~~l~~~~~---g~~~~v~  153 (480)
                      ++|+|||||...++     .+|.+.+.++.+.+...+   .++++||++||++|||++.+ .+++++..+   +.+|.++
T Consensus        79 ~i~i~VpTP~~~~~-----~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~  153 (202)
T d1mv8a2          79 VSFICVGTPSKKNG-----DLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVG  153 (202)
T ss_dssp             EEEECCCCCBCTTS-----SBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEE
T ss_pred             EEEEecCccccccc-----cccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccch
Confidence            99999999987644     789899999888877654   47889999999999999985 456665432   6789999


Q ss_pred             eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccC
Q 011654          154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWV  199 (480)
Q Consensus       154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~  199 (480)
                      |+|||+.+|+++.++.+++++|+|+.    ++++.+.++++|+.+.
T Consensus       154 ~~PE~~~~G~a~~d~~~~~~iViG~~----~~~~~~~~~~ly~~i~  195 (202)
T d1mv8a2         154 TNPEFLRESTAIKDYDFPPMTVIGEL----DKQTGDLLEEIYRELD  195 (202)
T ss_dssp             ECCCCCCTTSHHHHHHSCSCEEEEES----SHHHHHHHHHHHTTSS
T ss_pred             hhhhhhcccchhhhhcCCCeEEEEeC----CHHHHHHHHHHHHhcC
Confidence            99999999999999999999999987    5889999999999985

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.95  E-value=6.2e-28  Score=222.32  Aligned_cols=164  Identities=26%  Similarity=0.366  Sum_probs=140.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+||+|+++|..|+ +  ||+|++||+|+++++.|++|..|++|+++++++... ..+++++++...+..++|+
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~--g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i   76 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-L--QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSK-QLSIKATLDSKAAYKEAEL   76 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-T--TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHS-CCCEEEESCHHHHHHHCSE
T ss_pred             CEEEEECCChhHHHHHHHHH-C--CCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhh-hhhhhccchhhhhhhcccc
Confidence            89999999999999998886 5  899999999999999999999999999999987753 3457788888777899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAE  161 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~  161 (480)
                      |++|||||.+.+    ....+++.+.++.+.+... .++.+|+.+||++||+++++.+.+.      ++.++|+|||+.+
T Consensus        77 i~v~vpt~~~~~----~~~~~~~~v~~~~~~~~~~-~~~~~iii~Stv~pgt~~~~~~~~~------~~~~~~~PE~i~~  145 (196)
T d1dlja2          77 VIIATPTNYNSR----INYFDTQHVETVIKEVLSV-NSHATLIIKSTIPIGFITEMRQKFQ------TDRIIFSPEFLRE  145 (196)
T ss_dssp             EEECCCCCEETT----TTEECCHHHHHHHHHHHHH-CSSCEEEECSCCCTTHHHHHHHHTT------CSCEEECCCCCCT
T ss_pred             ccccCCcccccc----CCCcceeEEeehhhhhhhc-ccceeEEeeeecCceeeeeeeeccc------hhhhccchhhcch
Confidence            999999997642    2246788888888777765 5678899999999999998766543      3467899999999


Q ss_pred             cccccccCCCCeEEEEeCC
Q 011654          162 GTAIQDLFNPDRVLIGGRE  180 (480)
Q Consensus       162 G~a~~~~~~~~~vviG~~~  180 (480)
                      |++++++.+|+++++|+++
T Consensus       146 G~ai~d~~~p~riv~G~~~  164 (196)
T d1dlja2         146 SKALYDNLYPSRIIVSCEE  164 (196)
T ss_dssp             TSTTHHHHSCSCEEEECCT
T ss_pred             hhhHhhccCCCEEEEeCCH
Confidence            9999999999999988763

>d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
domain: GDP-mannose 6-dehydrogenase, middle domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=7.6e-25  Score=177.38  Aligned_cols=96  Identities=24%  Similarity=0.436  Sum_probs=90.9

Q ss_pred             hhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCC--CccccCCCCCcccchhhhHHHHHHHHHH
Q 011654          209 LWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIG--PRFLNSSVGFGGSCFQKDILNLVYICEC  286 (480)
Q Consensus       209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~--~~~~~pg~g~gg~cl~kD~~~l~~~a~~  286 (480)
                      +++||++|++.|+|++++|+|+||++.+|+++|+|..+|.++++.++|++  ..++.||+||||+|||||+.+|.+.+++
T Consensus         1 ie~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~ri~~~~~~~~pG~G~GG~ClpKD~~al~~~a~~   80 (98)
T d1mv8a1           1 VEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDHKLNLSRYYMRPGFAFGGSCLPKDVRALTYRASQ   80 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCTTTTTSSTTCSCCSCCCSSSHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCccccccccccCCcccCCccccchhHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999986  4577899999999999999999999999


Q ss_pred             cCCchhhhHHHHHHHHHHHh
Q 011654          287 NGLTEVANYWKQVIKVNDYQ  306 (480)
Q Consensus       287 ~g~~~~~~~~~~~~~~N~~~  306 (480)
                      .|++  .+++++++++|+.|
T Consensus        81 ~~~~--~~ll~~~~~~N~~q   98 (98)
T d1mv8a1          81 LDVE--HPMLGSLMRSNSNQ   98 (98)
T ss_dssp             TTCC--CTTGGGHHHHHHHH
T ss_pred             cCCC--hHHHHHHHHHHhCC
Confidence            9998  78999999999976

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.91  E-value=4.7e-25  Score=190.88  Aligned_cols=134  Identities=16%  Similarity=0.201  Sum_probs=99.9

Q ss_pred             HHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCC
Q 011654          313 RIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPM  392 (480)
Q Consensus       313 ~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (480)
                      ++.+.+ ..++++||+|||+||||||+|+|+||++.|++.|.++|++|.+|||+++.........   .+-...      
T Consensus         3 ~~~~~i-~~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~---~~~~~~------   72 (136)
T d1mv8a3           3 KAFDLI-TSHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANK---EYIESK------   72 (136)
T ss_dssp             HHHHHH-TTSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCH---HHHHHT------
T ss_pred             HHHHHH-HhcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhh---hhhhhc------
Confidence            344433 3568899999999999999999999999999999999999999999986543211000   000000      


Q ss_pred             CCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCcEEEEecC
Q 011654          393 SPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFIVYSIGK  467 (480)
Q Consensus       393 ~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~y~~iG~  467 (480)
                        ....+..++++++++++++|++|++|+|++|+++     ...+.++++|||+||+++..    .+.+|.|||+
T Consensus        73 --~~~~~~~~~~~~~e~i~~~D~ivi~t~h~~f~~l-----~~~~~~~~~I~D~~~~~~~~----~~~~~~gi~w  136 (136)
T d1mv8a3          73 --IPHVSSLLVSDLDEVVASSDVLVLGNGDELFVDL-----VNKTPSGKKLVDLVGFMPHT----TTAQAEGICW  136 (136)
T ss_dssp             --SHHHHTTBCSCHHHHHHHCSEEEECSCCGGGHHH-----HHSCCTTCEEEESSSCCSSS----CCSSEEESCC
T ss_pred             --cccccceeehhhhhhhhhceEEEEEeCCHHHHHH-----HHHhcCCCEEEECCCCCChh----HhcccCcccC
Confidence              0001234678999999999999999999999864     33455556999999999864    4667999985

>d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain
domain: UDP-glucose dehydrogenase (UDPGDH), middle domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.90  E-value=9.6e-24  Score=171.09  Aligned_cols=97  Identities=28%  Similarity=0.451  Sum_probs=90.5

Q ss_pred             hHHHHhhhHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCCccccCCCCCcccchhhhHHHHHHHHHHcCC
Q 011654          210 WSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGPRFLNSSVGFGGSCFQKDILNLVYICECNGL  289 (480)
Q Consensus       210 ~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~~~~~pg~g~gg~cl~kD~~~l~~~a~~~g~  289 (480)
                      .+||++|++.|+|++++|+|+||++.+|+++|+|..+|+++++.++|++.+++.||+||||+|||||+.+|+  +...|+
T Consensus         2 ~eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~~~~~~~~~pg~g~GG~ClpKD~~al~--~~~~~~   79 (98)
T d1dlja1           2 SEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDDRIGMHYNNPSFGYGGYSLPKDTKQLL--ANYNNI   79 (98)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTTCSSSCCCCSSCCSSHHHHHHHHHH--HHHTTS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhccccCCccccCCCCcccccCcccHHHHH--HHhcCC
Confidence            579999999999999999999999999999999999999999999999988999999999999999999995  466677


Q ss_pred             chhhhHHHHHHHHHHHhHHHH
Q 011654          290 TEVANYWKQVIKVNDYQKNRF  310 (480)
Q Consensus       290 ~~~~~~~~~~~~~N~~~~~~~  310 (480)
                      +  .+++++++++|+.|+.++
T Consensus        80 ~--~~ll~~~~~~N~~~~~~i   98 (98)
T d1dlja1          80 P--QTLIEAIVSSNNVRKSYI   98 (98)
T ss_dssp             S--CSHHHHHHHHHHHHHHHH
T ss_pred             C--cHHHHHHHHHHHhhhhhC
Confidence            7  679999999999998764

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.88  E-value=2.6e-22  Score=178.51  Aligned_cols=151  Identities=17%  Similarity=0.239  Sum_probs=126.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||||||+|.||.+||.+|+++  ||+|++||+++++.+.+.+.                   +....+++.++++++|+
T Consensus         1 MkIgiIGlG~MG~~~A~~L~~~--G~~V~~~d~~~~~~~~~~~~-------------------~~~~~~~~~e~~~~~d~   59 (161)
T d1vpda2           1 MKVGFIGLGIMGKPMSKNLLKA--GYSLVVSDRNPEAIADVIAA-------------------GAETASTAKAIAEQCDV   59 (161)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEECSSHHHHHHHCSE
T ss_pred             CEEEEEehhHHHHHHHHHHHHC--CCeEEEEeCCcchhHHHHHh-------------------hhhhcccHHHHHhCCCe
Confidence            8999999999999999999998  99999999999999988753                   34567889999999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHH---HHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAA---RMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~---~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      ||+|||++              ..+++++   +.+.+.++++++||++||+.|.+++++.+.+.+.+    +.++.+|..
T Consensus        60 ii~~v~~~--------------~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g----~~~vdapv~  121 (161)
T d1vpda2          60 IITMLPNS--------------PHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKG----VEMLDAPVS  121 (161)
T ss_dssp             EEECCSSH--------------HHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTT----CEEEECCEE
T ss_pred             EEEEcCCH--------------HHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcC----Cceeccccc
Confidence            99999865              2345555   56888899999999999999999999988887753    466788877


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccC
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWV  199 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~  199 (480)
                      ..+..+.....   .+++||+     ++.+++++++|+.++
T Consensus       122 gg~~~a~~g~l---~~~~gG~-----~~~~~~~~~il~~~~  154 (161)
T d1vpda2         122 GGEPKAIDGTL---SVMVGGD-----KAIFDKYYDLMKAMA  154 (161)
T ss_dssp             SHHHHHHHTCE---EEEEESC-----HHHHHHHHHHHHTTE
T ss_pred             CChhHHhcCCe---EEEEcCC-----HHHHHHHHHHHHHhc
Confidence            76655543322   4788986     789999999999986

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.84  E-value=1.9e-20  Score=166.42  Aligned_cols=153  Identities=18%  Similarity=0.216  Sum_probs=122.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |+||+|||+|.||.+||.+|+++  ||+|++||+++++.+.+.+.                   +.....++.+++..+|
T Consensus         1 M~kIg~IGlG~MG~~iA~~L~~~--g~~v~~~d~~~~~~~~~~~~-------------------~~~~~~~~~e~~~~~d   59 (162)
T d3cuma2           1 MKQIAFIGLGHMGAPMATNLLKA--GYLLNVFDLVQSAVDGLVAA-------------------GASAARSARDAVQGAD   59 (162)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHT-------------------TCEECSSHHHHHTSCS
T ss_pred             CCEEEEEEEHHHHHHHHHHHHHC--CCeEEEEECchhhhhhhhhh-------------------hccccchhhhhccccC
Confidence            78999999999999999999998  99999999999999887753                   2445678888899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHH---HHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAAR---MIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPE  157 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~---~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe  157 (480)
                      +|++|||.+              ..+++++.   .+.+.+.++++||++||+.|.+++++.+.+++.+    +.++.+|.
T Consensus        60 iii~~v~~~--------------~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~g----i~~~dapv  121 (162)
T d3cuma2          60 VVISMLPAS--------------QHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERG----LAMLDAPV  121 (162)
T ss_dssp             EEEECCSCH--------------HHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEECCE
T ss_pred             eeeecccch--------------hhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCC----CcEEeccc
Confidence            999999853              23344543   4677889999999999999999999999888764    34556666


Q ss_pred             cccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCC
Q 011654          158 FLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVP  200 (480)
Q Consensus       158 ~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~  200 (480)
                      ..+|..+....+   .+++||+     ++++++++++|+.++.
T Consensus       122 ~Gg~~~a~~G~l---~~~~gG~-----~~~~~~~~~il~~~~~  156 (162)
T d3cuma2         122 SGGTAGAAAGTL---TFMVGGD-----AEALEKARPLFEAMGR  156 (162)
T ss_dssp             ESCHHHHHHTCE---EEEEESC-----HHHHHHHHHHHHHHEE
T ss_pred             ccCccccccCCe---EEEecCC-----HHHHHHHHHHHHHHcC
Confidence            655544433322   5788986     7899999999999863

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=99.80  E-value=8.8e-19  Score=155.87  Aligned_cols=164  Identities=15%  Similarity=0.128  Sum_probs=122.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||.++|..|.++  ||+|++||++++.++.+++...                 .-...++. +++++||+
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~-----------------~~~~~~~~-~~~~~~Di   60 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQL-----------------VDEAGQDL-SLLQTAKI   60 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTS-----------------CSEEESCG-GGGTTCSE
T ss_pred             CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhc-----------------cceeeeec-cccccccc
Confidence            8999999999999999999998  9999999999999888765310                 01344554 46899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAE  161 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~  161 (480)
                      ||+|||.               +.++++++++.+.++++++|++.+++.....+.+.+.....   ...+..++|+..++
T Consensus        61 Iilavp~---------------~~~~~vl~~l~~~l~~~~iv~~~~s~~~~~~~~~~~~~~~~---~~~h~~~~~~~~g~  122 (165)
T d2f1ka2          61 IFLCTPI---------------QLILPTLEKLIPHLSPTAIVTDVASVKTAIAEPASQLWSGF---IGGHPMAGTAAQGI  122 (165)
T ss_dssp             EEECSCH---------------HHHHHHHHHHGGGSCTTCEEEECCSCCHHHHHHHHHHSTTC---EEEEECCCCSCSSG
T ss_pred             ccccCcH---------------hhhhhhhhhhhhhcccccceeeccccchHHHHHHHHhhccc---ccceeeecccccch
Confidence            9999974               34688999999999999999988887666555554433221   12344567787777


Q ss_pred             cccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEe
Q 011654          162 GTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIIT  206 (480)
Q Consensus       162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~  206 (480)
                      ..+..+++....+++. .....+++.++.++++|+.++  .+++.
T Consensus       123 ~~a~~~l~~~~~~il~-~~~~~~~~~~~~v~~l~~~lG--~~v~~  164 (165)
T d2f1ka2         123 DGAEENLFVNAPYVLT-PTEYTDPEQLACLRSVLEPLG--VKIYL  164 (165)
T ss_dssp             GGCCTTTTTTCEEEEE-ECTTCCHHHHHHHHHHHGGGT--CEEEE
T ss_pred             hhhcccccCCCeEEEE-eCCCCCHHHHHHHHHHHHHhC--CEEEe
Confidence            7777787766665543 223346899999999999985  35543

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=99.79  E-value=2e-19  Score=163.58  Aligned_cols=174  Identities=17%  Similarity=0.166  Sum_probs=132.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC-CCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD-QLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~-~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |+||+|||+|.||+++|..|+++  ||+|++|+++++.++.+++. .++.+.|++.      ...++++++|++++++++
T Consensus         7 m~KI~ViGaG~wGtAlA~~La~~--g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~------l~~~i~~t~~l~~a~~~a   78 (189)
T d1n1ea2           7 LNKAVVFGSGAFGTALAMVLSKK--CREVCVWHMNEEEVRLVNEKRENVLFLKGVQ------LASNITFTSDVEKAYNGA   78 (189)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTT--EEEEEEECSCHHHHHHHHHHTBCTTTSTTCB------CCTTEEEESCHHHHHTTC
T ss_pred             eceEEEECCCHHHHHHHHHHHHc--CCeEEEEEecHHHHHHHhhcccccccccccc------cccccccchhhhhccCCC
Confidence            45799999999999999999998  99999999999999999864 4666666652      246799999999999999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhh-----CCCCCEEEEec-CCccchHHHHHHHHHhcCCCCceeEe
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANV-----SNSNKIVVEKS-TVPVKTAEAIEKILTHNSREIKYQIL  153 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~-----l~~~~iVi~~S-Tv~~gt~~~l~~~l~~~~~g~~~~v~  153 (480)
                      |+||+|||+               ..++++++++.++     +.++..++..| .+.+++...+.+++.+......+.++
T Consensus        79 d~iiiavPs---------------~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vl  143 (189)
T d1n1ea2          79 EIILFVIPT---------------QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVL  143 (189)
T ss_dssp             SCEEECSCH---------------HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEE
T ss_pred             CEEEEcCcH---------------HHHHHHHHHHHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEE
Confidence            999999986               3467777776553     34556666655 36777777788888765443457788


Q ss_pred             eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEE
Q 011654          154 SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRII  205 (480)
Q Consensus       154 ~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~  205 (480)
                      ++|.++.+-..    ..|+.+++++.    +.+..+.++++|++..+..++|
T Consensus       144 sGP~~A~Ev~~----~~pt~~viAs~----~~~~a~~i~~lfst~~~~frvy  187 (189)
T d1n1ea2         144 AGPSFAIEVAT----GVFTCVSIASA----DINVARRLQRIMSTGDRSFVCW  187 (189)
T ss_dssp             ESSCCHHHHHT----TCCEEEEEECS----SHHHHHHHHHHHSCTTSSEEEE
T ss_pred             ecCCcHHHHHc----CCCcEEEEEeC----CHHHHHHHHHHhCCCCCCEEEe
Confidence            99998776432    35667888887    5889999999998643323444

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.77  E-value=3.2e-19  Score=147.06  Aligned_cols=93  Identities=20%  Similarity=0.247  Sum_probs=77.8

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      .++|+|||||||+||+|+|+||++.|++.|.+.|++|.+|||++...+.                        ..+..+.
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~~------------------------~~~~~~~   70 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLES------------------------EDQSVLV   70 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCCT------------------------TCCSEEC
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhHh------------------------ccCCEEE
Confidence            3589999999999999999999999999999999999999999975321                        1245677


Q ss_pred             cCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011654          404 WDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDV  452 (480)
Q Consensus       404 ~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~  452 (480)
                      .+++++++.+|++|+.+.|.+|.++.     +     +  +.+|++|.+
T Consensus        71 ~~l~~~~~~sDiII~~~~~~~~~~~~-----~-----K--v~tr~if~~  107 (108)
T d1dlja3          71 NDLENFKKQANIIVTNRYDNELQDVK-----N-----K--VYSRDIFGR  107 (108)
T ss_dssp             CCHHHHHHHCSEEECSSCCGGGGGGG-----G-----G--EECCCCSSC
T ss_pred             eCHHHHHhhCCEEEEcCCchHHHhcC-----c-----c--cCCCCCCCC
Confidence            89999999999999999999987642     1     2  358998864

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.75  E-value=1.6e-18  Score=155.87  Aligned_cols=156  Identities=10%  Similarity=0.140  Sum_probs=122.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE---ecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF---STDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~---t~d~~~a~~~   78 (480)
                      .+|+|||+|.||.+||.+|+++  ||+|++|||++++++.+.+.....              .....   ..++.+++..
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~--G~~V~v~dr~~~~~~~l~~~~~~~--------------~~~~~a~~~~~~~~~~~~   66 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDH--GFVVCAFNRTVSKVDDFLANEAKG--------------TKVLGAHSLEEMVSKLKK   66 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSTHHHHHHHHTTTTT--------------SSCEECSSHHHHHHHBCS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHC--CCeEEEEcCCHHHHHHHHHhcccc--------------ccccchhhhhhhhhhhcc
Confidence            4799999999999999999998  999999999999999987542211              11112   2334455678


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      +|.+++|+|.+              ..+.++.+++.+.++++++||++||+.|.+++++.+.+.+.+    +.++.+|..
T Consensus        67 ~~~ii~~~~~~--------------~~v~~v~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g----~~~ldapvs  128 (176)
T d2pgda2          67 PRRIILLVKAG--------------QAVDNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKG----ILFVGSGVS  128 (176)
T ss_dssp             SCEEEECSCTT--------------HHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTT----CEEEEEEEE
T ss_pred             cceEEEecCch--------------HHHHHHHHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcC----Cceeccccc
Confidence            99999999753              456788899999999999999999999999999888887764    455677776


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCC
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVP  200 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~  200 (480)
                      ..+..+...    ..+++||+     ++++++++++|+.++.
T Consensus       129 Gg~~~A~~G----~~~~~gG~-----~~~~~~~~~il~~~~~  161 (176)
T d2pgda2         129 GGEDGARYG----PSLMPGGN-----KEAWPHIKAIFQGIAA  161 (176)
T ss_dssp             SHHHHHHHC----CEEEEEEC-----TTTHHHHHHHHHHHSC
T ss_pred             cCcccccCC----cEEEcCCC-----HHHHHHHHHHHHHHhc
Confidence            665554432    14778986     6789999999999864

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.70  E-value=1.7e-16  Score=142.69  Aligned_cols=159  Identities=16%  Similarity=0.150  Sum_probs=121.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH---Hhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK---HVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~---a~~~   78 (480)
                      |||||||+|.||.+||.+|+++  ||+|++||+++++.+.+.+......           ....+....+.++   .+..
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~--G~~V~~~dr~~~~~~~l~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~   68 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEK--GFKVAVFNRTYSKSEEFMKANASAP-----------FAGNLKAFETMEAFAASLKK   68 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHTTTST-----------TGGGEEECSCHHHHHHHBCS
T ss_pred             CEEEEEeehHHHHHHHHHHHHC--CCeEEEEECCHHHHHHHHHcCCccc-----------cccchhhhhhhhHHHHhccc
Confidence            8999999999999999999998  9999999999999998865321110           0012344444333   3457


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEF  158 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~  158 (480)
                      ++.++++++..              ..+..++..+...+.++++++++||+.|.+++++.+.+.+..    +.++.+|..
T Consensus        69 ~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~----~~~ldapv~  130 (178)
T d1pgja2          69 PRKALILVQAG--------------AATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAG----LRFLGMGIS  130 (178)
T ss_dssp             SCEEEECCCCS--------------HHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTT----CEEEEEEEE
T ss_pred             ceEEEEeecCc--------------chhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcc----eeEeccccc
Confidence            88898888642              346778888999999999999999999999999988887653    456778876


Q ss_pred             ccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCC
Q 011654          159 LAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVP  200 (480)
Q Consensus       159 ~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~  200 (480)
                      ..+..+....    .+++||+     ++.+++++++|+.+++
T Consensus       131 g~~~~a~~g~----~~mvgG~-----~~~~~~v~pil~~~~~  163 (178)
T d1pgja2         131 GGEEGARKGP----AFFPGGT-----LSVWEEIRPIVEAAAA  163 (178)
T ss_dssp             SHHHHHHHCC----EEEEEEC-----HHHHHHHHHHHHHHSC
T ss_pred             CCcchhcCCc----EEEeeCC-----HHHHHHHHHHHHHHhc
Confidence            6554443332    4788986     8899999999999874

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.67  E-value=1.3e-16  Score=143.72  Aligned_cols=171  Identities=14%  Similarity=0.200  Sum_probs=122.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC--CHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI--SVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~--~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      |||+|||+|.||+++|..|+++  |++|++|.+  +++.++.+++++ ++.+...+       ....+.+++|.++++++
T Consensus         1 MkI~ViGaG~~GtalA~~la~~--g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~-------~~~~i~~~~~~~~~~~~   71 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDN--GNEVRIWGTEFDTEILKSISAGREHPRLGVKL-------NGVEIFWPEQLEKCLEN   71 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH--CCEEEEECCGGGHHHHHHHHTTCCBTTTTBCC-------CSEEEECGGGHHHHHTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEecccHHHHHHHhhhhhhhhhcchh-------ccccccccccHHHHHhc
Confidence            9999999999999999999999  999999987  677899998764 23222111       12346788999999999


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC-ccchH-HHHHHHHHhcCC--CCceeEee
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV-PVKTA-EAIEKILTHNSR--EIKYQILS  154 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv-~~gt~-~~l~~~l~~~~~--g~~~~v~~  154 (480)
                      +|+|++|||+.               .++++++++.+++++..+|+....+ +.++. ..+.+.+++...  ...+.++.
T Consensus        72 ad~Ii~avps~---------------~~~~~~~~l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vls  136 (180)
T d1txga2          72 AEVVLLGVSTD---------------GVLPVMSRILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAIT  136 (180)
T ss_dssp             CSEEEECSCGG---------------GHHHHHHHHTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEE
T ss_pred             cchhhcccchh---------------hhHHHHHhhccccccceecccccCccccccccccchHHHHhhhcccccceeEEc
Confidence            99999999852               3688999999999876655543333 22221 123445554332  23467789


Q ss_pred             CCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEe
Q 011654          155 NPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIIT  206 (480)
Q Consensus       155 ~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~  206 (480)
                      +|.++.+-..    ..|..+++++.    +.+..+.++++|+.-  ..+++.
T Consensus       137 GP~~A~Ei~~----~~pt~~vias~----~~~~a~~i~~~f~~~--~frvy~  178 (180)
T d1txga2         137 GPAIAREVAK----RMPTTVVFSSP----SESSANKMKEIFETE--YFGVEV  178 (180)
T ss_dssp             SSCCHHHHHT----TCCEEEEEECS----CHHHHHHHHHHHCBT--TEEEEE
T ss_pred             CCccHHHHHc----CCCcEEEEEcC----CHHHHHHHHHHHCCC--CEEEEe
Confidence            9998876321    24556778887    588899999999873  235554

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.66  E-value=3.3e-15  Score=132.99  Aligned_cols=170  Identities=16%  Similarity=0.182  Sum_probs=120.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH-HhccC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK-HVAEA   79 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~-a~~~a   79 (480)
                      |+||+|||+|.||.++|..|.+++...+|++||+|++..+.+++...                 .-..+++..+ ...++
T Consensus         1 Mk~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-----------------~~~~~~~~~~~~~~~~   63 (171)
T d2g5ca2           1 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-----------------IDEGTTSIAKVEDFSP   63 (171)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-----------------CSEEESCGGGGGGTCC
T ss_pred             CCEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-----------------chhhhhhhhhhhcccc
Confidence            67899999999999999999988223589999999999888775311                 0123444443 33589


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      |+|++|+|.               ..+.++++++.++++++++|++.+++.....+.+.+.+.+...  ..+-..++|..
T Consensus        64 dlIila~p~---------------~~~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i--~~hPm~G~e~s  126 (171)
T d2g5ca2          64 DFVMLSSPV---------------RTFREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFV--GGHPIAGTEKS  126 (171)
T ss_dssp             SEEEECSCH---------------HHHHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEE--CEEEECCCSCC
T ss_pred             ccccccCCc---------------hhhhhhhhhhhccccccccccccccccHHHHHHHHHhhccccc--ccccccccccc
Confidence            999999873               2357788999999999999999888877777777666654310  01122344555


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeC
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITT  207 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~  207 (480)
                      ++..+..++++...+++ ++...++++.++.++++|+.++  .++..|
T Consensus       127 G~~~a~~~Lf~g~~~il-~p~~~~~~~~~~~v~~~~~~lG--~~v~~M  171 (171)
T d2g5ca2         127 GVEYSLDNLYEGKKVIL-TPTKKTDKKRLKLVKRVWEDVG--GVVEYM  171 (171)
T ss_dssp             SGGGCCSSTTTTCEEEE-CCCSSSCHHHHHHHHHHHHHTT--CEEEEC
T ss_pred             cHHHHHHHhhCCCeEEE-ecCCCCCHHHHHHHHHHHHHcC--CEEEeC
Confidence            66667777777665554 3444557889999999999984  466543

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=99.64  E-value=3.4e-16  Score=137.66  Aligned_cols=148  Identities=17%  Similarity=0.233  Sum_probs=113.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .||+|||+|.||.+||.+|.++  |+.| +|++++++.+.+.+..                 +.  ..... +.+.++|+
T Consensus         1 ekIg~IGlG~MG~~ma~~L~~~--g~~~-~~~~~~~~~~~~~~~~-----------------~~--~~~~~-~~~~~~~~   57 (156)
T d2cvza2           1 EKVAFIGLGAMGYPMAGHLARR--FPTL-VWNRTFEKALRHQEEF-----------------GS--EAVPL-ERVAEARV   57 (156)
T ss_dssp             CCEEEECCSTTHHHHHHHHHTT--SCEE-EECSSTHHHHHHHHHH-----------------CC--EECCG-GGGGGCSE
T ss_pred             CeEEEEeHHHHHHHHHHHHHhC--CCEE-EEeCCHHHHHHHHHHc-----------------CC--ccccc-ccccceeE
Confidence            3899999999999999999987  8866 5666666665544310                 11  22333 44778999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAE  161 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~  161 (480)
                      +|+|+|.+              ..+......+.+.++++++++++||+.|.+++++.+.+++.+    +.++.+|...++
T Consensus        58 ~i~~~~~~--------------~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~g----i~~ldapVsGg~  119 (156)
T d2cvza2          58 IFTCLPTT--------------REVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKG----VTYLDAPVSGGT  119 (156)
T ss_dssp             EEECCSSH--------------HHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTT----EEEEECCEESHH
T ss_pred             EEecccch--------------hhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcC----CeEEeccccCch
Confidence            99998853              346777889999999999999999999999999999888753    567788887766


Q ss_pred             cccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccC
Q 011654          162 GTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWV  199 (480)
Q Consensus       162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~  199 (480)
                      -.+....+   .+++||+     ++.+++++++++ ++
T Consensus       120 ~~A~~G~L---~~~vgG~-----~~~~~~~~p~L~-~~  148 (156)
T d2cvza2         120 SGAEAGTL---TVMLGGP-----EEAVERVRPFLA-YA  148 (156)
T ss_dssp             HHHHHTCE---EEEEESC-----HHHHHHHGGGCT-TE
T ss_pred             hhhccCCE---EEEEeCC-----HHHHHHHHHHHH-hc
Confidence            55544433   4788986     889999999985 64

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=99.59  E-value=3.6e-15  Score=133.87  Aligned_cols=173  Identities=20%  Similarity=0.223  Sum_probs=111.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +||+|||+|.||+++|..|+++  ||+|++||+++++++.+++.. ...+.++...     .......+++++++++++|
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~e~~~~aD   74 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALK--GQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAG-----TAHPDLLTSDIGLAVKDAD   74 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHTSEEEESSSCCE-----EECCSEEESCHHHHHTTCS
T ss_pred             CEEEEECccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHcCCCchhhhhhhh-----hhhhhhhhhhhHhHhcCCC
Confidence            6999999999999999999998  999999999999999998643 3333332211     1123456888999999999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCC-CCceeEe----eC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSR-EIKYQIL----SN  155 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~-g~~~~v~----~~  155 (480)
                      +||+|||++.               ++++++++.+++.++++|+..++...+ ...+.+.+..... ...+...    ++
T Consensus        75 ~iii~v~~~~---------------~~~~~~~i~~~l~~~~~iv~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (184)
T d1bg6a2          75 VILIVVPAIH---------------HASIAANIASYISEGQLIILNPGATGG-ALEFRKILRENGAPEVTIGETSSMLFT  138 (184)
T ss_dssp             EEEECSCGGG---------------HHHHHHHHGGGCCTTCEEEESSCCSSH-HHHHHHHHHHTTCCCCEEEEESSCSEE
T ss_pred             EEEEEEchhH---------------HHHHHHHhhhccCCCCEEEEeCCCCcc-HHHHHHHHHHhcCCCceEEEecCCcce
Confidence            9999998642               478899999999999988876655444 4445555655432 1111111    22


Q ss_pred             CccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhcc
Q 011654          156 PEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHW  198 (480)
Q Consensus       156 Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~  198 (480)
                      +....+|........ .++.++..+...+++..+.++++|..+
T Consensus       139 ~~~~~~~~v~~~~~~-~~~~~a~~~~~~~~~~~~~l~~~~~~f  180 (184)
T d1bg6a2         139 CRSERPGQVTVNAIK-GAMDFACLPAAKAGWALEQIGSVLPQY  180 (184)
T ss_dssp             EECSSTTEEEEEEEC-SCEEEEEESGGGHHHHHHHHTTTCTTE
T ss_pred             eeEecCCeeEEEeec-CCEEEEEecCCCCHHHHHHHHHhCcCe
Confidence            234445543211111 133344443333556666666666443

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.54  E-value=3e-15  Score=130.86  Aligned_cols=104  Identities=16%  Similarity=0.148  Sum_probs=81.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||.++|..|+++  ||+|++||++++....+...                   ...+..++.+++++||+
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~--g~~v~~~~~~~~~~~~~~~~-------------------~~~~~~~~~e~~~~~di   59 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSR--GVEVVTSLEGRSPSTIERAR-------------------TVGVTETSEEDVYSCPV   59 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHT--TCEEEECCTTCCHHHHHHHH-------------------HHTCEECCHHHHHTSSE
T ss_pred             CEEEEEcHHHHHHHHHHHHHHC--CCeEEEEcCchhHHHHHhhh-------------------cccccccHHHHHhhcCe
Confidence            8999999999999999999998  99999999887665554421                   01124567788999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHh
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTH  143 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~  143 (480)
                      ||+|||.+.               ..+++.++...+  ++++++.||+.|.+.+++.+.+++
T Consensus        60 Ii~~v~~~~---------------~~~~~~~~~~~~--~~~~id~st~~p~~~~~l~~~~~~  104 (152)
T d1i36a2          60 VISAVTPGV---------------ALGAARRAGRHV--RGIYVDINNISPETVRMASSLIEK  104 (152)
T ss_dssp             EEECSCGGG---------------HHHHHHHHHTTC--CSEEEECSCCCHHHHHHHHHHCSS
T ss_pred             EEEEecCch---------------HHHHHHhhcccC--CceeeccCcCCHHHHHHHHHHHhc
Confidence            999998421               245556666554  578999999999999998877754

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.9e-14  Score=127.31  Aligned_cols=173  Identities=18%  Similarity=0.195  Sum_probs=109.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC----------CCCCCCCh-HHHHHhhcCCCEEEe
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ----------LPIYEPGL-EDVVTQCRGRNLFFS   69 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~----------~~~~e~~l-~~l~~~~~~~~l~~t   69 (480)
                      |.||+|||+|.||..+|..++.+  |++|++||++++.++...+..          .....+.. ++... ...+++..+
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~-~~l~~i~~~   80 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAAT--GHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVE-KTLSTIATS   80 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHH-HHHHTEEEE
T ss_pred             eEEEEEECcCHHHHHHHHHHHhC--CCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHH-HHHhhcccc
Confidence            46999999999999999999998  999999999998766544310          00000000 01111 112468899


Q ss_pred             cCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe-cCCccchHHHHHHHHHhcCCCC
Q 011654           70 TDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK-STVPVKTAEAIEKILTHNSREI  148 (480)
Q Consensus        70 ~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~  148 (480)
                      +|+.+++.+||+|+.|+|.             |++.-+++++++.+.+++++++... |++++.   .++..+...   .
T Consensus        81 ~d~~~a~~~ad~ViEav~E-------------~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~---~la~~~~~p---~  141 (192)
T d1f0ya2          81 TDAASVVHSTDLVVEAIVE-------------NLKVKNELFKRLDKFAAEHTIFASNTSSLQIT---SIANATTRQ---D  141 (192)
T ss_dssp             SCHHHHTTSCSEEEECCCS-------------CHHHHHHHHHHHTTTSCTTCEEEECCSSSCHH---HHHTTSSCG---G
T ss_pred             chhHhhhcccceehhhccc-------------chhHHHHHHHHHhhhcccCceeeccCcccccc---hhhhhccCH---h
Confidence            9999999999999999985             3344588999999999999877533 333322   222211110   0


Q ss_pred             ceeEe--eCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCC
Q 011654          149 KYQIL--SNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTN  208 (480)
Q Consensus       149 ~~~v~--~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~  208 (480)
                      .|..+  ++|.+..+--         -| +.+..  +++++++.+.++++.+++ .++.+.|
T Consensus       142 r~ig~HffnP~~~~~lV---------EI-v~g~~--T~~~~i~~~~~~~~~lgk-~pV~v~D  190 (192)
T d1f0ya2         142 RFAGLHFFNPVPVMKLV---------EV-IKTPM--TSQKTFESLVDFSKALGK-HPVSCKD  190 (192)
T ss_dssp             GEEEEEECSSTTTCCEE---------EE-ECCTT--CCHHHHHHHHHHHHHTTC-EEEEECS
T ss_pred             HEEeeccccccCcccEE---------EE-cCCCC--CCHHHHHHHHHHHHHcCC-EEEEeec
Confidence            11111  2333322210         13 44443  379999999999999864 5566554

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=99.51  E-value=2.4e-15  Score=140.24  Aligned_cols=168  Identities=16%  Similarity=0.115  Sum_probs=124.3

Q ss_pred             EEEEcCCh--hHHHHHH------HHHHcCCCCeEEEEeCCHHH-HHHHHCCCCCCCCCChHHHHHh-hcC----------
Q 011654            4 ICCIGAGY--VGGPTMA------VIALKCPKIEVAVVDISVSR-IAAWNGDQLPIYEPGLEDVVTQ-CRG----------   63 (480)
Q Consensus         4 I~VIGlG~--~G~~lA~------~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~-~~~----------   63 (480)
                      +.++|+|.  ||..++.      +|++.  |+.|++.|.|+++ ++.+++|+.++++|++.+.+.+ ...          
T Consensus        43 ~~~~gagl~~~~~gi~~v~vs~~~fa~~--g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~  120 (242)
T d2b0ja2          43 SITYGAELLHLVPDVKEVIVSDPCFAEE--PGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIH  120 (242)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEECGGGGSS--SEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEE
T ss_pred             eeeeeecHHhhhhchhhhhccchhhhhc--CCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhh
Confidence            45666665  6666666      68887  9999999999877 5889999999999999988764 111          


Q ss_pred             ------CCEEEecCHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHH
Q 011654           64 ------RNLFFSTDIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAI  137 (480)
Q Consensus        64 ------~~l~~t~d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l  137 (480)
                            .++++++|+.++++++|+||+|||.+.              .+.+++++|.++++++++|++.||+++.+++++
T Consensus       121 ~~~pEe~Gv~v~~d~~Eav~~ADiII~~vP~~~--------------~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l  186 (242)
T d2b0ja2         121 LVHPEDVGLKVTSDDREAVEGADIVITWLPKGN--------------KQPDIIKKFADAIPEGAIVTHACTIPTTKFAKI  186 (242)
T ss_dssp             SSCGGGGTCEEESCHHHHHTTCSEEEECCTTCT--------------THHHHHHHHGGGSCTTCEEEECSSSCHHHHHHH
T ss_pred             cCCHHHCCCEEECCHHHHHhcCCeEEEeeecHH--------------HHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHH
Confidence                  236789999999999999999998652              247788999999999999999999999988888


Q ss_pred             HHHHHhcCCCCceeEeeCCccccccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCC
Q 011654          138 EKILTHNSREIKYQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVP  200 (480)
Q Consensus       138 ~~~l~~~~~g~~~~v~~~Pe~~~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~  200 (480)
                      .+.+.+.+  .+ ++..+|-. .|+..     ....++.++.    +++.++++.++|+.+++
T Consensus       187 ~e~l~~kg--i~-vi~~hp~a-~pe~~-----g~~li~~~~a----seE~iekv~elles~Gk  236 (242)
T d2b0ja2         187 FKDLGRED--LN-ITSYHPGC-VPEMK-----GQVYIAEGYA----SEEAVNKLYEIGKIARG  236 (242)
T ss_dssp             HHHTTCTT--SE-EEECBCSS-CTTTC-----CCEEEEESSS----CHHHHHHHHHHHHHHHS
T ss_pred             HHhcccCC--CE-EECCCccC-cCccc-----cceEEecCCC----CHHHHHHHHHHHHHHCC
Confidence            77665542  22 23344432 23221     1111222322    58999999999999863

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=99.45  E-value=2.2e-13  Score=118.64  Aligned_cols=141  Identities=18%  Similarity=0.194  Sum_probs=99.4

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |+||+||| +|.||.+||.+|.++  ||+|++||++++.                                +.++.+.++
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~--G~~V~~~d~~~~~--------------------------------~~~~~~~~~   54 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRAS--GYPISILDREDWA--------------------------------VAESILANA   54 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTT--TCCEEEECTTCGG--------------------------------GHHHHHTTC
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHc--CCCcEeccccccc--------------------------------ccchhhhhc
Confidence            57999999 999999999999998  9999999986431                                123446889


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      |++++|+|..               .+..++.++.+.++++++|++.||+.+...+.+.+.+..     + ++..+|-+.
T Consensus        55 ~~v~~~~~~~---------------~~~~v~~~~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~~-----~-~v~~hP~~G  113 (152)
T d2pv7a2          55 DVVIVSVPIN---------------LTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHTG-----A-VLGLHPMFG  113 (152)
T ss_dssp             SEEEECSCGG---------------GHHHHHHHHGGGCCTTSEEEECCSCCHHHHHHHHHHCSS-----E-EEEEEECSC
T ss_pred             cccccccchh---------------hheeeeecccccccCCceEEEecccCHHHHHHHHHHccC-----C-EEEecccCC
Confidence            9999998742               246788899999999999999999987777666543322     2 344556544


Q ss_pred             cccccccccCCCCeEEE-EeCCCcchHHHHHHHHHHHhccCCCCeEEe
Q 011654          160 AEGTAIQDLFNPDRVLI-GGRETPEGQKAIQALKDVYAHWVPEDRIIT  206 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vvi-G~~~~~~~~~~~~~~~~l~~~~~~~~~v~~  206 (480)
                      .+-....   ....++. |+.     ++.++++.++|+.++  .+++.
T Consensus       114 p~~~~~~---g~~~v~~~g~~-----~~~~~~~~~ll~~~G--a~v~e  151 (152)
T d2pv7a2         114 ADIASMA---KQVVVRCDGRF-----PERYEWLLEQIQIWG--AKIYQ  151 (152)
T ss_dssp             TTCSCCT---TCEEEEEEEEC-----GGGTHHHHHHHHHTT--CEEEE
T ss_pred             CcccccC---CcEEEEecCCC-----HHHHHHHHHHHHHhC--CEEEe
Confidence            3222211   1112333 443     567899999999985  45543

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.43  E-value=3.7e-13  Score=117.34  Aligned_cols=145  Identities=13%  Similarity=0.217  Sum_probs=95.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||.+++..|.++  |++|++|++++++.+.+.+.                  -++.+++++.+++++||+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~--~~~i~v~~r~~~~~~~l~~~------------------~g~~~~~~~~~~~~~~dv   60 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQT--PHELIISGSSLERSKEIAEQ------------------LALPYAMSHQDLIDQVDL   60 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTS--SCEEEEECSSHHHHHHHHHH------------------HTCCBCSSHHHHHHTCSE
T ss_pred             CEEEEEeccHHHHHHHHHHHhC--CCeEEEEcChHHhHHhhccc------------------cceeeechhhhhhhccce
Confidence            8999999999999999999988  89999999999999887642                  124566788898999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAE  161 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~  161 (480)
                      ||+||+ |.                  .++++.+.++++++|+  |....-+.+.+.+.+....   .+ +-..|.-...
T Consensus        61 Iilavk-p~------------------~~~~vl~~l~~~~~ii--s~~agi~~~~l~~~l~~~~---~i-vr~mPN~~~~  115 (152)
T d2ahra2          61 VILGIK-PQ------------------LFETVLKPLHFKQPII--SMAAGISLQRLATFVGQDL---PL-LRIMPNMNAQ  115 (152)
T ss_dssp             EEECSC-GG------------------GHHHHHTTSCCCSCEE--ECCTTCCHHHHHHHHCTTS---CE-EEEECCGGGG
T ss_pred             eeeecc-hH------------------hHHHHhhhcccceeEe--cccccccHHHHHhhhcccc---cc-hhhccchhhh
Confidence            999996 32                  1234455677788777  3333224455666554321   12 1112321100


Q ss_pred             cccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccC
Q 011654          162 GTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWV  199 (480)
Q Consensus       162 G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~  199 (480)
                            ...+...+.++.  ..+++..+.++++|+.++
T Consensus       116 ------v~~g~~~~~~~~--~~~~~~~~~v~~l~~~~G  145 (152)
T d2ahra2         116 ------ILQSSTALTGNA--LVSQELQARVRDLTDSFG  145 (152)
T ss_dssp             ------GTCEEEEEEECT--TCCHHHHHHHHHHHHTTE
T ss_pred             ------cCccceEEEeCC--CCCHHHHHHHHHHHHhCC
Confidence                  011112222332  225788999999999985

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=99.43  E-value=9.6e-13  Score=118.57  Aligned_cols=164  Identities=17%  Similarity=0.222  Sum_probs=106.6

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC----------CCCCCCCChHHHHHhhcCCCEEEec
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD----------QLPIYEPGLEDVVTQCRGRNLFFST   70 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~----------~~~~~e~~l~~l~~~~~~~~l~~t~   70 (480)
                      |.||+|||+|.||..+|..++.+  |++|++||++++.++...+.          .........+..     ..++..++
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~--G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~-----~~~i~~~~   76 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASK--GTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEV-----LNGIRPTL   76 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHH-----HHHEEEES
T ss_pred             CCEEEEECcCHHHHHHHHHHHhC--CCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhh-----hceeeccc
Confidence            57899999999999999999998  99999999999876654321          001111111111     13577888


Q ss_pred             CHHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe-cCCccchHHHHHHHHHhcCCCCc
Q 011654           71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK-STVPVKTAEAIEKILTHNSREIK  149 (480)
Q Consensus        71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~-STv~~gt~~~l~~~l~~~~~g~~  149 (480)
                      +.++ +.+||+|+.|+|..             +..-++++++|.+++++++++... |++++.   .+    .+..    
T Consensus        77 ~~~~-~~~adlViEav~E~-------------l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~---~l----a~~~----  131 (186)
T d1wdka3          77 SYGD-FGNVDLVVEAVVEN-------------PKVKQAVLAEVENHVREDAILASNTSTISIS---LL----AKAL----  131 (186)
T ss_dssp             SSTT-GGGCSEEEECCCSC-------------HHHHHHHHHHHHTTSCTTCEEEECCSSSCHH---HH----GGGC----
T ss_pred             cccc-ccccceeeeeecch-------------HHHHHHHHHHHHhhcCCCeeEEeccccccHH---HH----HHhc----
Confidence            8765 89999999999863             344588999999999999987543 333432   22    1111    


Q ss_pred             eeEeeCCccccccccccccCCCC------eEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeCC
Q 011654          150 YQILSNPEFLAEGTAIQDLFNPD------RVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITTN  208 (480)
Q Consensus       150 ~~v~~~Pe~~~~G~a~~~~~~~~------~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~~  208 (480)
                          ..|+|..-    .++++|+      -| +.+..+  ++++++.+.++++.+++ .++.+.|
T Consensus       132 ----~~p~r~~g----~Hf~nP~~~~~lVEi-v~~~~T--~~~~~~~~~~~~~~lgk-~pv~v~d  184 (186)
T d1wdka3         132 ----KRPENFVG----MHFFNPVHMMPLVEV-IRGEKS--SDLAVATTVAYAKKMGK-NPIVVND  184 (186)
T ss_dssp             ----SCGGGEEE----EECCSSTTTCCEEEE-EECSSC--CHHHHHHHHHHHHHTTC-EEEEEES
T ss_pred             ----cCchheEe----eccccCcccCCeEEE-CCCCCC--CHHHHHHHHHHHHHcCC-EEEEEec
Confidence                12332221    1222222      24 444433  78999999999999864 5566544

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=99.36  E-value=2.3e-12  Score=112.17  Aligned_cols=144  Identities=10%  Similarity=0.190  Sum_probs=92.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||.+|+..|.+++ +++|++||+++++.+.+++.                  .++..+++.++ +.++|+
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~-~~~i~v~~r~~~~~~~l~~~------------------~~~~~~~~~~~-v~~~Di   60 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQG-GYRIYIANRGAEKRERLEKE------------------LGVETSATLPE-LHSDDV   60 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHC-SCEEEEECSSHHHHHHHHHH------------------TCCEEESSCCC-CCTTSE
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCC-CCcEEEEeCChhHHHHhhhh------------------ccccccccccc-ccccce
Confidence            89999999999999999998872 49999999999999988752                  23566677665 788999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCce-eE-eeCCccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKY-QI-LSNPEFL  159 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~-~v-~~~Pe~~  159 (480)
                      ||+||+ |.              .+.++++++   ...+++|+  |+...-+.+.+++.+....   .+ .+ ...|...
T Consensus        61 v~lavk-P~--------------~~~~v~~~l---~~~~~~vi--S~~ag~~~~~l~~~l~~~~---~iir~mpn~p~~~  117 (152)
T d1yqga2          61 LILAVK-PQ--------------DMEAACKNI---RTNGALVL--SVAAGLSVGTLSRYLGGTR---RIVRVMPNTPGKI  117 (152)
T ss_dssp             EEECSC-HH--------------HHHHHHTTC---CCTTCEEE--ECCTTCCHHHHHHHTTSCC---CEEEEECCGGGGG
T ss_pred             EEEecC-HH--------------HHHHhHHHH---hhcccEEe--ecccCCCHHHHHHHhCcCc---ceEeecccchhHh
Confidence            999997 31              234444443   23456665  4444444556666554321   11 11 1233333


Q ss_pred             cccccccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccC
Q 011654          160 AEGTAIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWV  199 (480)
Q Consensus       160 ~~G~a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~  199 (480)
                      +.|.         ..+..+  ...+++..+.++++|+.++
T Consensus       118 ~~g~---------t~~~~~--~~~~~~~~~~v~~l~~~~G  146 (152)
T d1yqga2         118 GLGV---------SGMYAE--AEVSETDRRIADRIMKSVG  146 (152)
T ss_dssp             TCEE---------EEEECC--TTSCHHHHHHHHHHHHTTE
T ss_pred             cCCc---------EEEEeC--CCCCHHHHHHHHHHHHhCC
Confidence            3221         122222  2235778899999999985

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=99.16  E-value=3.1e-12  Score=111.21  Aligned_cols=148  Identities=13%  Similarity=0.120  Sum_probs=85.3

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcEEE
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADIVF   83 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDvVi   83 (480)
                      |+|||+|.||.+||..|.++  ++.+.+|+|++++.+.+.+..                  ... ..++.++++.+|+||
T Consensus         2 IgfIG~G~mg~~l~~~L~~~--~~~~~v~~R~~~~~~~l~~~~------------------~~~-~~~~~~~~~~~DiVi   60 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECLKDR--YEIGYILSRSIDRARNLAEVY------------------GGK-AATLEKHPELNGVVF   60 (153)
T ss_dssp             CEEESCCHHHHHHHHTTC------CCCEECSSHHHHHHHHHHT------------------CCC-CCSSCCCCC---CEE
T ss_pred             EEEEeCcHHHHHHHHHHHhC--CCEEEEEeCChhhhcchhhcc------------------ccc-ccchhhhhccCcEEE
Confidence            79999999999999999765  555679999999999887521                  111 234566789999999


Q ss_pred             EeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCccccccc
Q 011654           84 VSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLAEGT  163 (480)
Q Consensus        84 i~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~~G~  163 (480)
                      +|||..               .+.++++++   ..++++|+.+|+..+-.      .++... ...++.+.+|....+. 
T Consensus        61 l~v~d~---------------~i~~v~~~l---~~~~~ivi~~s~~~~~~------~l~~~~-~~~~~~~~~~~~~~~~-  114 (153)
T d2i76a2          61 VIVPDR---------------YIKTVANHL---NLGDAVLVHCSGFLSSE------IFKKSG-RASIHPNFSFSSLEKA-  114 (153)
T ss_dssp             ECSCTT---------------THHHHHTTT---CCSSCCEEECCSSSCGG------GGCSSS-EEEEEECSCC--CTTG-
T ss_pred             Eeccch---------------hhhHHHhhh---cccceeeeecccchhhh------hhhhhc-cccceeeeecccccch-
Confidence            999842               134444433   24688888877653321      122211 0123333344322221 


Q ss_pred             cccccCCCCeEEEEeCCCcchHHHHHHHHHHHhccCCCCeEEeC
Q 011654          164 AIQDLFNPDRVLIGGRETPEGQKAIQALKDVYAHWVPEDRIITT  207 (480)
Q Consensus       164 a~~~~~~~~~vviG~~~~~~~~~~~~~~~~l~~~~~~~~~v~~~  207 (480)
                       ...+... .++++++     +++.+.++++++.++  .+++..
T Consensus       115 -~~~~~~~-~~~~~gd-----~~~~~~~~~l~~~lG--~~~~~i  149 (153)
T d2i76a2         115 -LEMKDQI-VFGLEGD-----ERGLPIVKKIAEEIS--GKYFVI  149 (153)
T ss_dssp             -GGCGGGC-CEEECCC-----TTTHHHHHHHHHHHC--SCEEEC
T ss_pred             -hhhccCc-EEEEeCC-----HHHHHHHHHHHHHHC--CcEEEe
Confidence             1111122 2566765     578899999999996  244443

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=3.9e-11  Score=105.14  Aligned_cols=96  Identities=15%  Similarity=0.085  Sum_probs=70.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      |||+|||+|.||+.+|..|++.  ||+|++|++++++.+.++.....     ..       ......+.+..+.+..+|+
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~D~   66 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQ--GHEVQGWLRVPQPYCSVNLVETD-----GS-------IFNESLTANDPDFLATSDL   66 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCSEEEEEEECTT-----SC-------EEEEEEEESCHHHHHTCSE
T ss_pred             CEEEEECcCHHHHHHHHHHHHC--CCceEEEEcCHHHhhhhccccCC-----cc-------ccccccccchhhhhcccce
Confidence            9999999999999999999998  99999999988755443321100     00       0011233333455899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK  126 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~  126 (480)
                      ||+||+.+            +   ++++++.+.+++.++++|+..
T Consensus        67 iii~vka~------------~---~~~~~~~l~~~~~~~~~Iv~~   96 (167)
T d1ks9a2          67 LLVTLKAW------------Q---VSDAVKSLASTLPVTTPILLI   96 (167)
T ss_dssp             EEECSCGG------------G---HHHHHHHHHTTSCTTSCEEEE
T ss_pred             EEEeeccc------------c---hHHHHHhhccccCcccEEeec
Confidence            99999853            1   478899999999888877654

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=98.89  E-value=1.8e-08  Score=86.18  Aligned_cols=115  Identities=20%  Similarity=0.283  Sum_probs=74.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHH--hhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVT--QCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~--~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|||+|++|.++|..|+.++...++.++|+++++.+.....           +..  .........+.|+++ +++|
T Consensus         6 ~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~D-----------l~~a~~~~~~~~~~~~d~~~-~~~a   73 (146)
T d1ez4a1           6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALD-----------LEDAQAFTAPKKIYSGEYSD-CKDA   73 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH-----------HHGGGGGSCCCEEEECCGGG-GTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHH-----------HhccccccCCceEeeccHHH-hccc
Confidence            79999999999999999999873236999999999876543311           111  011234567788876 8999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      |+|+++...|...+.   + +.|     .+.+++..+.|.++.+ +.++++ .|.|....
T Consensus        74 divvitag~~~~~g~---~-r~~l~~~N~~i~~~~~~~i~~~~p-~aiviv-vtNPvdv~  127 (146)
T d1ez4a1          74 DLVVITAGAPQKPGE---S-RLDLVNKNLNILSSIVKPVVDSGF-DGIFLV-AANPVDIL  127 (146)
T ss_dssp             SEEEECCCC--------------CHHHHHHHHHHHHHHHHHTTC-CSEEEE-CSSSHHHH
T ss_pred             cEEEEecccccCCCC---C-HHHHHHHHHHHHHHHHHHHhhcCC-CcEEEE-eCCccHHH
Confidence            999999988765411   1 222     4456677778887765 445544 45676653

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=98.74  E-value=2.8e-08  Score=84.69  Aligned_cols=121  Identities=22%  Similarity=0.224  Sum_probs=77.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHH-hhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVT-QCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~-~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|.+|.++|..|+.+....++.++|+++++.+.....        +..... .....++..+++++ ++++||
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d--------~~~~~~~~~~~~~i~~~~~~~-~~~dad   71 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALD--------MYESGPVGLFDTKVTGSNDYA-DTANSD   71 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHH--------HHTTHHHHTCCCEEEEESCGG-GGTTCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhh--------hhcccchhcccceEEecCCHH-HhcCCe
Confidence            89999999999999999999873336999999998766543211        000000 01123456667765 589999


Q ss_pred             EEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      +|+++...|.....   ++    .-+...+++..+.|.++.+ +.++++ -|.|..+.-.
T Consensus        72 vvvitag~~~~~g~---~r~~l~~~N~~i~~~i~~~i~~~~p-~aiviv-vtNPvd~~~~  126 (142)
T d1guza1          72 IVIITAGLPRKPGM---TREDLLMKNAGIVKEVTDNIMKHSK-NPIIIV-VSNPLDIMTH  126 (142)
T ss_dssp             EEEECCSCCCCTTC---CHHHHHHHHHHHHHHHHHHHHHHCS-SCEEEE-CCSSHHHHHH
T ss_pred             EEEEEEecCCCCCC---chHHHHHHHHHHHHHHHHHhhccCC-CeEEEE-ecCChHHHHH
Confidence            99999876654310   11    1123335566677777765 455544 4678776443

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.71  E-value=1e-07  Score=81.68  Aligned_cols=120  Identities=17%  Similarity=0.231  Sum_probs=76.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .||+|||+|.||.++|..|+.+....++.++|+++++.+.....        ++.............+.+++ ++++||+
T Consensus         7 ~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~D--------l~~~~~~~~~~~~~~~~d~~-~l~daDv   77 (148)
T d1ldna1           7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMD--------FNHGKVFAPKPVDIWHGDYD-DCRDADL   77 (148)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH--------HHHHTTSSSSCCEEEECCGG-GTTTCSE
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhcc--------HhhCccccCCCeEEEECCHH-Hhcccee
Confidence            48999999999999999999873335899999999876543321        11000001112233456665 4999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           82 VFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      |+++...|.....   + +.|     ...+++..+.|.++.++. ++++ -|.|....-.
T Consensus        78 vvitag~~~~~~~---~-R~dl~~~N~~i~~~i~~~i~~~~p~a-~~iv-vtNPvd~~t~  131 (148)
T d1ldna1          78 VVICAGANQKPGE---T-RLDLVDKNIAIFRSIVESVMASGFQG-LFLV-ATNPVDILTY  131 (148)
T ss_dssp             EEECCSCCCCTTT---C-SGGGHHHHHHHHHHHHHHHHHHTCCS-EEEE-CSSSHHHHHH
T ss_pred             EEEecccccccCc---c-hhHHHHHHHHHHHHHHHHHHhhCCCc-eEEE-ecCccHHHHH
Confidence            9999887765411   1 222     455666777888887654 4443 3667765433

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.71  E-value=1.6e-07  Score=79.52  Aligned_cols=116  Identities=22%  Similarity=0.320  Sum_probs=75.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh--hcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ--CRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~--~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|||+|.+|.++|..++.+....++.++|+++++.+....           ++...  ........+++++ ++++|
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~-----------Dl~~~~~~~~~~~~~~~~~~-~~~~a   68 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDAL-----------DLIHGTPFTRRANIYAGDYA-DLKGS   68 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHH-----------HHHHHGGGSCCCEEEECCGG-GGTTC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhc-----------cccccccccccccccCCcHH-HhcCC
Confidence            8999999999999999999877334689999999987664332           11110  1112233455655 59999


Q ss_pred             cEEEEeccCCCCcCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      |+|+++...|....   .. +.     +...+++..+.|.++.+. .++++ -|.|..+.-
T Consensus        69 divvitag~~~~~g---~~-r~dl~~~N~~I~~~i~~~i~~~~p~-aiviv-vtNPvd~~t  123 (140)
T d1a5za1          69 DVVIVAAGVPQKPG---ET-RLQLLGRNARVMKEIARNVSKYAPD-SIVIV-VTNPVDVLT  123 (140)
T ss_dssp             SEEEECCCCCCCSS---CC-HHHHHHHHHHHHHHHHHHHHHHCTT-CEEEE-CSSSHHHHH
T ss_pred             CEEEEecccccCCC---cc-hhhhhccccchHHHHHHHHHhcCCC-cEEEE-eCCcHHHHH
Confidence            99999988765431   11 11     223356666777777764 44444 567877633

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=98.71  E-value=9.9e-08  Score=81.44  Aligned_cols=122  Identities=17%  Similarity=0.194  Sum_probs=75.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +||+|||+|++|.++|..|+.++...++.++|+++++.+.....        +.+............+.++++ +++||+
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~D--------l~~a~~~~~~~~~~~~~d~~~-l~~adi   72 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQID--------FQDAMANLEAHGNIVINDWAA-LADADV   72 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHH--------HHHHGGGSSSCCEEEESCGGG-GTTCSE
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHh--------hhccccccCCccceeccCHHH-hccccE
Confidence            69999999999999999998873235899999999876543321        111111111122345677765 899999


Q ss_pred             EEEeccCCCCcCC-CCCCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           82 VFVSVNTPTKTQG-LGAGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        82 Vii~Vptp~~~~~-~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      |+++.+.+..... -+.+ +.|     ...+++..+.+.++.+ +.++++ -|.|....-
T Consensus        73 VVitaG~~~~~~~~~g~~-R~~l~~~N~~i~~~i~~~i~~~~p-~aiviv-vtNPvD~~t  129 (146)
T d1hyha1          73 VISTLGNIKLQQDNPTGD-RFAELKFTSSMVQSVGTNLKESGF-HGVLVV-ISNPVDVIT  129 (146)
T ss_dssp             EEECCSCGGGTC--------CTTHHHHHHHHHHHHHHHHHTTC-CSEEEE-CSSSHHHHH
T ss_pred             EEEeccccccccccCCcc-HHHHHHHHHHHHHHHHHHHhhcCC-CeEEEE-ecCcHHHHH
Confidence            9999876542210 0011 222     3456677777777665 454443 467776543

>d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.69  E-value=3.2e-08  Score=83.32  Aligned_cols=89  Identities=19%  Similarity=0.190  Sum_probs=75.1

Q ss_pred             ChhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCC-------ccc--cCCCCCcccchhhhHH
Q 011654          208 NLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGP-------RFL--NSSVGFGGSCFQKDIL  278 (480)
Q Consensus       208 ~~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~-------~~~--~pg~g~gg~cl~kD~~  278 (480)
                      +++++..+|+++|.+.++++..+.|...+|++.|+|+++++++++..+.-++       +++  .+.|+|....+.||+.
T Consensus         1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~~~~~~~~~~~f~~~l~~KDl~   80 (133)
T d1vpda1           1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPMVMDRNFKPGFRIDLHIKDLA   80 (133)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHHHHHTTCCCCSSBHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccchhhhccCCCCchHHHHHHHHH
Confidence            4678999999999999999999999999999999999999999987753211       111  3456889999999999


Q ss_pred             HHHHHHHHcCCchhhhHHHH
Q 011654          279 NLVYICECNGLTEVANYWKQ  298 (480)
Q Consensus       279 ~l~~~a~~~g~~~~~~~~~~  298 (480)
                      +..++|++.|++  .++.+.
T Consensus        81 l~~~~a~~~~~~--~p~~~~   98 (133)
T d1vpda1          81 NALDTSHGVGAQ--LPLTAA   98 (133)
T ss_dssp             HHHHHHHHHTCC--CHHHHH
T ss_pred             HHHHHHHHcCCC--ChHHHH
Confidence            999999999998  565554

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=98.68  E-value=5.7e-08  Score=82.64  Aligned_cols=121  Identities=18%  Similarity=0.209  Sum_probs=76.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +||+|||+|++|.++|..|+.+. -.++.++|+++++.+........     ...+.  ....+++.++|+++ ++++|+
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~-l~dl~l~D~~~~~~~~~~~Dl~~-----~~~~~--~~~~~i~~~~d~~~-~~~adv   72 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKE-LGDIVLLDIVEGVPQGKALDLYE-----ASPIE--GFDVRVTGTNNYAD-TANSDV   72 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSSSSHHHHHHHHHHT-----THHHH--TCCCCEEEESCGGG-GTTCSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCC-cceEEEEeeccccchhHHHHhhc-----ccccc--CCCCEEEecCcHHH-hcCCCE
Confidence            59999999999999999998872 24899999998765543321000     00000  11234677888886 899999


Q ss_pred             EEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      |+++...|.....   ++    ..+.+.+++....|.++.+++ ++++ .|.|..+.-.
T Consensus        73 vvitag~~~~~~~---~r~dl~~~N~~i~~~i~~~i~k~~p~a-iviv-vtNPvDv~t~  126 (142)
T d1uxja1          73 IVVTSGAPRKPGM---SREDLIKVNADITRACISQAAPLSPNA-VIIM-VNNPLDAMTY  126 (142)
T ss_dssp             EEECCSCC------------CHHHHHHHHHHHHHHHGGGCTTC-EEEE-CSSSHHHHHH
T ss_pred             EEEeeeccCCcCc---chhHHHhHHHHHHHHHHHHHhccCCCc-eEEE-eCCchHHHHH
Confidence            9999988764411   11    112345566777777776544 4433 5778766433

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.65  E-value=1.6e-07  Score=79.76  Aligned_cols=118  Identities=18%  Similarity=0.200  Sum_probs=73.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~~~aD   80 (480)
                      |||+|||+|.+|.++|..++.+..-.++.++|+++++.+....        ++....... ...++..++|++ +++++|
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~al--------Dl~~~~~~~~~~~~i~~~~d~~-~~~~ad   71 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAM--------DLAHAAAGIDKYPKIVGGADYS-LLKGSE   71 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHH--------HHHHHHHTTTCCCEEEEESCGG-GGTTCS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHH--------HHhhhccccCCCCccccCCCHH-Hhcccc
Confidence            8999999999999999999877222479999999987654221        011111001 112466777876 499999


Q ss_pred             EEEEeccCCCCcCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           81 IVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      +|+++...|....   .+ +.     +...+++..+.+.++.+ +.++++ -|.|....
T Consensus        72 iVvitag~~~~~g---~~-r~~l~~~n~~i~~~i~~~i~~~~p-~aiviv-vtNPvD~~  124 (142)
T d1ojua1          72 IIVVTAGLARKPG---MT-RLDLAHKNAGIIKDIAKKIVENAP-ESKILV-VTNPMDVM  124 (142)
T ss_dssp             EEEECCCCCCCSS---CC-HHHHHHHHHHHHHHHHHHHHTTST-TCEEEE-CSSSHHHH
T ss_pred             EEEEeccccCCCC---Cc-hHHHHHHhhHHHHHHHHHHHhhCC-CcEEEE-ecCChHHH
Confidence            9999988765441   11 11     22233444555666654 455544 46676553

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=98.62  E-value=1.5e-07  Score=80.05  Aligned_cols=121  Identities=23%  Similarity=0.239  Sum_probs=76.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .||+|||+|.+|.++|..++.+....++.++|+++++.+.....        ++..........+..++++++ +++||+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~D--------l~~a~~~~~~~~i~~~~~~~~-~~daDv   72 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLD--------MQHGSSFYPTVSIDGSDDPEI-CRDADM   72 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH--------HHHTGGGSTTCEEEEESCGGG-GTTCSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHH--------HHhccccCCCceeecCCCHHH-hhCCcE
Confidence            59999999999999999999873345899999999876542210        000000011234556777765 899999


Q ss_pred             EEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           82 VFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      |+++...|....   .++    ..+.+.+++..++|.++.+.+ ++++ -|.|....-.
T Consensus        73 VVitaG~~~~~g---~~R~dl~~~N~~i~~~i~~~i~~~~p~a-i~iv-vtNPvDvmt~  126 (143)
T d1llda1          73 VVITAGPRQKPG---QSRLELVGATVNILKAIMPNLVKVAPNA-IYML-ITNPVDIATH  126 (143)
T ss_dssp             EEECCCCCCCTT---CCHHHHHHHHHHHHHHHHHHHHHHCTTS-EEEE-CCSSHHHHHH
T ss_pred             EEEecccccCCC---CchhhhhhhhHHHHHHHHHHHHhhCCCe-EEEE-eCCchHHHHH
Confidence            999998775431   111    113445566667777776544 4433 4667765433

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=98.60  E-value=3.8e-07  Score=78.47  Aligned_cols=122  Identities=18%  Similarity=0.209  Sum_probs=78.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~~~a   79 (480)
                      +||+|||+|.+|.++|..|+.+  +. +++++|+++++.+.....        +....... ....+..+++.++++++|
T Consensus         8 ~KI~IIGaG~VG~~lA~~l~~~--~~~el~L~D~~~~~~~g~a~D--------l~~~~~~~~~~~~~~~~~~~~~~~~~a   77 (154)
T d1pzga1           8 KKVAMIGSGMIGGTMGYLCALR--ELADVVLYDVVKGMPEGKALD--------LSHVTSVVDTNVSVRAEYSYEAALTGA   77 (154)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCCEEEEECSSSSHHHHHHHH--------HHHHHHHTTCCCCEEEECSHHHHHTTC
T ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCceEEEEEeccccchhHHHH--------HhhhccccCCeeEEeccCchhhhhcCC
Confidence            5899999999999999988877  53 899999998876654321        11111111 123466778888889999


Q ss_pred             cEEEEeccCCCCcCCCCC-CCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           80 DIVFVSVNTPTKTQGLGA-GKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~-~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      |+|+++...+......+. ..+.|     ...+++.++.+.++.++ .++++ .|.|....-
T Consensus        78 diVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~-aivii-vsNPvd~lt  137 (154)
T d1pzga1          78 DCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPK-TFIIV-VTNPLDCMV  137 (154)
T ss_dssp             SEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTT-CEEEE-CCSSHHHHH
T ss_pred             CeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCC-cEEEE-eCCcHHHHH
Confidence            999999876643210000 01222     23466777778777764 44443 566776543

>d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.56  E-value=1.9e-07  Score=78.56  Aligned_cols=90  Identities=14%  Similarity=0.103  Sum_probs=74.5

Q ss_pred             hhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCC--------------Cccc--cCCCCCcccc
Q 011654          209 LWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIG--------------PRFL--NSSVGFGGSC  272 (480)
Q Consensus       209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~--------------~~~~--~pg~g~gg~c  272 (480)
                      .+++..+|+++|.+.+.++..+.|+..++++.|+|++.++++++..+.-+              ..+.  +..+||....
T Consensus         2 ~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~l   81 (134)
T d3cuma1           2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQL   81 (134)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchHH
Confidence            46789999999999999999999999999999999999999998764110              0111  3567788899


Q ss_pred             hhhhHHHHHHHHHHcCCchhhhHHHHHH
Q 011654          273 FQKDILNLVYICECNGLTEVANYWKQVI  300 (480)
Q Consensus       273 l~kD~~~l~~~a~~~g~~~~~~~~~~~~  300 (480)
                      +.||+.+..+++++.|++  .++.+.+.
T Consensus        82 ~~KDl~l~~~~a~~~g~~--~p~~~~a~  107 (134)
T d3cuma1          82 MAKDLGLAQEAAQASASS--TPMGSLAL  107 (134)
T ss_dssp             HHHHHHHHHHHHHHHTCC--CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCC--ChHHHHHH
Confidence            999999999999999998  56655444

>d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: 6-phosphogluconate dehydrogenase C-terminal domain-like
superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like
family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.54  E-value=1.1e-07  Score=79.72  Aligned_cols=90  Identities=12%  Similarity=0.048  Sum_probs=73.5

Q ss_pred             hhHHHHhhhHHhHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcCCCCCCC-------c-cc--cCCCCCcccchhhhHH
Q 011654          209 LWSAELSKLAANAFLAQRISSVNAMSALCEATGADVTQVSHAIGKDTRIGP-------R-FL--NSSVGFGGSCFQKDIL  278 (480)
Q Consensus       209 ~~~ae~~Kl~~N~~~~~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~~~~~-------~-~~--~pg~g~gg~cl~kD~~  278 (480)
                      ++++..+|+++|.+.+.++..+.|...+|++.|+|+++++++++.++.-++       . ..  +..++|.-..+.||+.
T Consensus         1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p~~~~~~~~~~~f~~~~~~KDl~   80 (132)
T d2cvza1           1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQRVLTRAFPKTFALGLLVKDLG   80 (132)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHHHTTTSCCCCSSBHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhhHHHHHHhhhhhhHHHHHhhHHH
Confidence            367899999999999999999999999999999999999999987642111       0 11  2446788899999999


Q ss_pred             HHHHHHHHcCCchhhhHHHHHH
Q 011654          279 NLVYICECNGLTEVANYWKQVI  300 (480)
Q Consensus       279 ~l~~~a~~~g~~~~~~~~~~~~  300 (480)
                      +..+.|++.|++  .++...+.
T Consensus        81 l~~~~a~~~g~~--~pl~~~~~  100 (132)
T d2cvza1          81 IAMGVLDGEKAP--SPLLRLAR  100 (132)
T ss_dssp             HHHHHHTTTCCC--CHHHHHHH
T ss_pred             HHHHHHHHcCCC--ChHHHHHH
Confidence            999999999998  55555433

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=98.50  E-value=4.9e-07  Score=78.09  Aligned_cols=119  Identities=21%  Similarity=0.217  Sum_probs=74.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .||+|||+|.+|.++|..|+.++.--++.++|+++++.+.....        +..............+.++++ +++||+
T Consensus        21 ~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alD--------l~h~~~~~~~~~~~~~~d~~~-~~~adi   91 (160)
T d1i0za1          21 NKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMD--------LQHGSLFLQTPKIVADKDYSV-TANSKI   91 (160)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHH--------HHHTGGGCCCSEEEECSSGGG-GTTCSE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHH--------HhccccccCCCeEEeccchhh-cccccE
Confidence            49999999999999999999882223899999998876543211        000000011123345566665 899999


Q ss_pred             EEEeccCCCCcCCCCCCCC----CChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           82 VFVSVNTPTKTQGLGAGKA----ADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~----~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      |+++...|....   +++.    .+...+++...+|.++.+++.+++  -|.|....
T Consensus        92 VVitAg~~~~~g---~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiiv--vtNPvDv~  143 (160)
T d1i0za1          92 VVVTAGVRQQEG---ESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIV--VSNPVDIL  143 (160)
T ss_dssp             EEECCSCCCCTT---CCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEE--CSSSHHHH
T ss_pred             EEEecCCccccC---cchHHHHHHHHHHHHHHHHHHHhcCCCcEEEE--eCCchHHH
Confidence            999988776441   1221    123345666677777765444444  35666553

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=98.42  E-value=6e-07  Score=78.61  Aligned_cols=79  Identities=20%  Similarity=0.167  Sum_probs=54.9

Q ss_pred             cEEEEEcCChhHHHHHH--HHHHc--CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGYVGGPTMA--VIALK--CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~--~La~~--~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~   76 (480)
                      |||+|||+|.+|.+++.  .++..  .++.+++++|+|+++++.....        +...... ...-+++.++|.++++
T Consensus         3 mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~--------~~~~~~~~~~~~~i~~~td~~eaL   74 (171)
T d1obba1           3 VKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTI--------AKKYVEEVGADLKFEKTMNLDDVI   74 (171)
T ss_dssp             CEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHH--------HHHHHHHTTCCCEEEEESCHHHHH
T ss_pred             cEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHH--------HHHHHHhcCCCeEEEEeCChhhcc
Confidence            89999999999987543  23321  1246999999999987754321        1111111 1234577889999999


Q ss_pred             ccCcEEEEeccC
Q 011654           77 AEADIVFVSVNT   88 (480)
Q Consensus        77 ~~aDvVii~Vpt   88 (480)
                      ++||+|++++..
T Consensus        75 ~dad~Vv~~~~~   86 (171)
T d1obba1          75 IDADFVINTAMV   86 (171)
T ss_dssp             TTCSEEEECCCT
T ss_pred             cCCCeEeeeccc
Confidence            999999998754

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.40  E-value=5.2e-07  Score=77.88  Aligned_cols=117  Identities=19%  Similarity=0.229  Sum_probs=72.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh---hcCCCEEEecCHHHHhcc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ---CRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~---~~~~~l~~t~d~~~a~~~   78 (480)
                      +||+|||+|.+|.++|..|+.++...++.++|+++++.+.....           +...   ........++++++ +++
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alD-----------l~~~~~~~~~~~~~~~~d~~~-~~~   87 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALD-----------LQHGSLFLSTPKIVFGKDYNV-SAN   87 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHH-----------HHHTTTTCSCCEEEEESSGGG-GTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHH-----------HhCcchhcCCCeEEeccchhh-hcc
Confidence            48999999999999999999873345899999998876533211           1100   01123445677765 799


Q ss_pred             CcEEEEeccCCCCcCCCCCCCC----CChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKA----ADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~----~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      ||+|+++...|.....   ++.    .+...+++....|.++.+ +.++++ -|.|....-
T Consensus        88 adivvitag~~~~~~~---~R~dll~~N~~i~~~i~~~i~~~~p-~~iviv-vtNPvDv~t  143 (159)
T d2ldxa1          88 SKLVIITAGARMVSGQ---TRLDLLQRNVAIMKAIVPGVIQNSP-DCKIIV-VTNPVDILT  143 (159)
T ss_dssp             EEEEEECCSCCCCTTT---CSSCTTHHHHHHHHHHTTTHHHHST-TCEEEE-CSSSHHHHH
T ss_pred             ccEEEEecccccCCCC---CHHHHHHHHHHHHHHHHHHHhccCC-CeEEEE-eCCcHHHHH
Confidence            9999999887765421   211    122333444444555544 454443 356766533

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.40  E-value=1.2e-06  Score=74.46  Aligned_cols=118  Identities=23%  Similarity=0.376  Sum_probs=70.5

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHH--HHHHHHCCCCCCCCCChHHHHHhh-cCCCEE--EecCHHHH
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVS--RIAAWNGDQLPIYEPGLEDVVTQC-RGRNLF--FSTDIEKH   75 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~--~t~d~~~a   75 (480)
                      |||+|||+ |.+|.++|..|+.+..-.++.++|++++  +.+.....        +.+..... ....++  .+++++ +
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~D--------l~~~~~~~~~~~~~~~~~~~d~~-~   71 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLRED--------IYDALAGTRSDANIYVESDENLR-I   71 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHH--------HHHHHTTSCCCCEEEEEETTCGG-G
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhccccc--------chhcccccccCCccccCCcchHH-H
Confidence            89999995 9999999999988722259999999863  33322210        11111000 011222  233555 5


Q ss_pred             hccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           76 VAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      +++||+|+++...|....   .++    .-+.+.+++..+.|.++.+ ..++++  |.|....
T Consensus        72 l~~aDvVVitAG~~~~~g---~sR~dl~~~Na~iv~~i~~~i~~~~~-~~iivV--tNPvD~m  128 (145)
T d1hyea1          72 IDESDVVIITSGVPRKEG---MSRMDLAKTNAKIVGKYAKKIAEICD-TKIFVI--TNPVDVM  128 (145)
T ss_dssp             GTTCSEEEECCSCCCCTT---CCHHHHHHHHHHHHHHHHHHHHHHCC-CEEEEC--SSSHHHH
T ss_pred             hccceEEEEecccccCCC---CChhhhhhhhHHHHHHHHHHHhccCC-CeEEEE--cCchHHH
Confidence            899999999987766441   111    1123345666777777764 455543  6787653

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=98.34  E-value=1e-06  Score=74.64  Aligned_cols=115  Identities=20%  Similarity=0.354  Sum_probs=66.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHH----HHCCCCCCCCCChHHHHHhhcCCCEE-EecCHHHHh
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAA----WNGDQLPIYEPGLEDVVTQCRGRNLF-FSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~----l~~~~~~~~e~~l~~l~~~~~~~~l~-~t~d~~~a~   76 (480)
                      .||+|||+|.+|.++|..++.+....++.++|+++++.+.    +... .++             .+..+ .+.+++ ++
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~-~~~-------------~~~~~~~~~~~~-~~   66 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHG-LPF-------------MGQMSLYAGDYS-DV   66 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTS-CCC-------------TTCEEEC--CGG-GG
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccC-ccc-------------CCCeeEeeCcHH-Hh
Confidence            5899999999999999999987334589999999876432    2221 111             11222 234555 48


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      ++||+|+++...+....   +++    .-+...+++..+.+.++.+++ ++++ -|.|....-.
T Consensus        67 ~~adivvitag~~~~~~---~~r~~l~~~N~~i~~~i~~~i~~~~p~a-i~iv-vtNPvdv~t~  125 (142)
T d1y6ja1          67 KDCDVIVVTAGANRKPG---ETRLDLAKKNVMIAKEVTQNIMKYYNHG-VILV-VSNPVDIITY  125 (142)
T ss_dssp             TTCSEEEECCCC---------CHHHHHHHHHHHHHHHHHHHHHHCCSC-EEEE-CSSSHHHHHH
T ss_pred             CCCceEEEecccccCcC---cchhHHhhHHHHHHHHHHHHhhccCCCc-eEEE-ecChHHHHHH
Confidence            99999999977664331   111    112344556666777776544 4443 4677765433

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.33  E-value=5.2e-07  Score=79.74  Aligned_cols=103  Identities=15%  Similarity=0.196  Sum_probs=73.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.+|..+|..+..-  |.+|++||+++.      ++                   ......++++.++.||+
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~--g~~v~~~d~~~~------~~-------------------~~~~~~~l~ell~~sDi   95 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAAL--GAQVRGFSRTPK------EG-------------------PWRFTNSLEEALREARA   95 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHT--TCEEEEECSSCC------CS-------------------SSCCBSCSHHHHTTCSE
T ss_pred             ceEEEeccccccccceeeeecc--cccccccccccc------cc-------------------ceeeeechhhhhhccch
Confidence            4799999999999999999887  999999998642      11                   11234678888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|-..+..     .-.+        ++....++++.++|+.|-.+.=..+.|.+.|++.
T Consensus        96 v~~~~pl~~~t~-----~li~--------~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~  145 (181)
T d1qp8a1          96 AVCALPLNKHTR-----GLVK--------YQHLALMAEDAVFVNVGRAEVLDRDGVLRILKER  145 (181)
T ss_dssp             EEECCCCSTTTT-----TCBC--------HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHC
T ss_pred             hhcccccccccc-----cccc--------cceeeeccccceEEeccccccccchhhhhhcccC
Confidence            999987532211     1222        3456678999999987754433345577777764

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.31  E-value=2.2e-06  Score=72.63  Aligned_cols=129  Identities=13%  Similarity=0.201  Sum_probs=78.6

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .||+|||+ |.+|.++|..|+.++.--++.++|+++.+.+.+--.+.....          .......+++..+++++||
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~----------~~~~~~~~~~~~~~~~~aD   70 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRA----------TVKGYLGPEQLPDCLKGCD   70 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSC----------EEEEEESGGGHHHHHTTCS
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhc----------CCCeEEcCCChHHHhCCCC
Confidence            38999995 999999999999872224799999998765543311110000          0011122345567789999


Q ss_pred             EEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH-HHHHHHhcC
Q 011654           81 IVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA-IEKILTHNS  145 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~-l~~~l~~~~  145 (480)
                      +|+++-..|....   .++    .-+.+.+++..+.+.++.++ .++++ .|.|..+.-. +.+.+++.+
T Consensus        71 ivVitag~~~~~g---~sR~~ll~~N~~i~~~i~~~i~~~~p~-~iiiv-vtNPvD~~t~~~~~~~kk~~  135 (144)
T d1mlda1          71 VVVIPAGVPRKPG---MTRDDLFNTNATIVATLTAACAQHCPD-AMICI-ISNPVNSTIPITAEVFKKHG  135 (144)
T ss_dssp             EEEECCSCCCCTT---CCGGGGHHHHHHHHHHHHHHHHHHCTT-SEEEE-CSSCHHHHHHHHHHHHHHTT
T ss_pred             EEEECCCcCCCCC---CCcchHHHHHHHHHHHHHHHHHhcCCC-eEEEE-ecCchhhhHHHHHHHHHHhc
Confidence            9999988766441   111    22345567777788888554 44443 4667775443 344555543

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.30  E-value=1.9e-06  Score=73.56  Aligned_cols=122  Identities=20%  Similarity=0.172  Sum_probs=75.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +||+|||+|.+|.++|..|..+.. .++.++|+++++.+.....        +...... .....+..+.++++ ++++|
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~D--------l~~~~~~~~~~~~v~~~~~~~~-~~~ad   73 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALD--------TSHTNVMAYSNCKVSGSNTYDD-LAGAD   73 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHH--------HHTHHHHHTCCCCEEEECCGGG-GTTCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecc--------hhhhccccCCCcEEEecccccc-cCCCc
Confidence            599999999999999988877632 4899999998776554321        1111000 11233555566655 89999


Q ss_pred             EEEEeccCCCCcCCCC-CCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchHH
Q 011654           81 IVFVSVNTPTKTQGLG-AGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTAE  135 (480)
Q Consensus        81 vVii~Vptp~~~~~~~-~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~  135 (480)
                      +|+++...+......+ ...+.|     ...+++..+.|.++.+ +.++++ -|.|....-
T Consensus        74 vvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p-~aiviv-vtNPvD~~t  132 (150)
T d1t2da1          74 VVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCP-NAFIIV-VTNPVDVMV  132 (150)
T ss_dssp             EEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCT-TSEEEE-CSSSHHHHH
T ss_pred             EEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCC-CeEEEE-ecCchHHHH
Confidence            9999988665431000 001222     3356667777777765 455544 467776543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=98.22  E-value=1.5e-06  Score=77.39  Aligned_cols=108  Identities=13%  Similarity=0.109  Sum_probs=74.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|||||+|.+|..+|..+..-  |.+|++||+....-..-.                    .+....+++++.++.||+
T Consensus        50 ktvgIiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~~~~~~--------------------~~~~~~~~l~~ll~~sD~  107 (193)
T d1mx3a1          50 ETLGIIGLGRVGQAVALRAKAF--GFNVLFYDPYLSDGVERA--------------------LGLQRVSTLQDLLFHSDC  107 (193)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCTTHHHH--------------------HTCEECSSHHHHHHHCSE
T ss_pred             ceEEEeccccccccceeeeecc--ccceeeccCcccccchhh--------------------hccccccchhhccccCCE
Confidence            4799999999999999999876  999999998532111000                    124456788998999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|-.....     ...+        ++....++++.++|+.|--..=..+.|.+.|++.
T Consensus       108 i~~~~plt~~T~-----~li~--------~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~  157 (193)
T d1mx3a1         108 VTLHCGLNEHNH-----HLIN--------DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEG  157 (193)
T ss_dssp             EEECCCCCTTCT-----TSBS--------HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHT
T ss_pred             EEEeecccccch-----hhhh--------HHHHhccCCCCeEEecCCceEEcHHHHHHHHHcC
Confidence            999998533221     1222        2345668999999987754443455677777654

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=98.19  E-value=1.8e-06  Score=74.90  Aligned_cols=70  Identities=23%  Similarity=0.279  Sum_probs=50.2

Q ss_pred             cEEEEEcCChhHHH-HHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc-cC
Q 011654            2 VKICCIGAGYVGGP-TMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA-EA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~-~a   79 (480)
                      |||+|||+|.+|.. ....+.+. ++.++.++|.++++.+.+.+..                 +.....+|+++.++ +.
T Consensus         2 irvgiiG~G~~~~~~~~~~l~~~-~~~~~~~~d~~~~~~~~~~~~~-----------------~~~~~~~~~~~ll~~~i   63 (167)
T d1xeaa1           2 LKIAMIGLGDIAQKAYLPVLAQW-PDIELVLCTRNPKVLGTLATRY-----------------RVSATCTDYRDVLQYGV   63 (167)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTS-TTEEEEEECSCHHHHHHHHHHT-----------------TCCCCCSSTTGGGGGCC
T ss_pred             eEEEEEcCCHHHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHHHhc-----------------ccccccccHHHhccccc
Confidence            79999999999976 44555543 5789899999999988877531                 01123456666554 67


Q ss_pred             cEEEEeccCC
Q 011654           80 DIVFVSVNTP   89 (480)
Q Consensus        80 DvVii~Vptp   89 (480)
                      |+|+||+|+.
T Consensus        64 D~V~I~tp~~   73 (167)
T d1xeaa1          64 DAVMIHAATD   73 (167)
T ss_dssp             SEEEECSCGG
T ss_pred             ceeccccccc
Confidence            9999998754

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=5.7e-06  Score=70.10  Aligned_cols=124  Identities=18%  Similarity=0.227  Sum_probs=74.8

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHH---HHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            2 VKICCIG-AGYVGGPTMAVIALK-CPKIEVAVVDISVSRIA---AWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~---~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      |||+||| .|.+|.++|..|+.+ ..+.++.++|+++....   .++......            ....+.-+++++ ++
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~------------~~~~~~~~~~~~-~~   67 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAV------------KIKGFSGEDATP-AL   67 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSC------------EEEEECSSCCHH-HH
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCcccc------------CCcEEEcCCCcc-cc
Confidence            8999999 599999999888654 23579999998753211   222211000            001111234555 58


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHH-HHHHHhc
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAI-EKILTHN  144 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l-~~~l~~~  144 (480)
                      +++|+||++-..|..+.   .+ +.     +...+++..++|.++.++..+++  -|.|..+.-.+ .+.+...
T Consensus        68 ~~aDvvvitaG~~~k~g---~~-R~dl~~~N~~i~~~v~~~i~~~~p~aiviv--vtNPvD~m~~~~~~v~~~~  135 (145)
T d2cmda1          68 EGADVVLISAGVRRKPG---MD-RSDLFNVNAGIVKNLVQQVAKTCPKACIGI--ITNPVNTTVAIAAEVLKKA  135 (145)
T ss_dssp             TTCSEEEECCSCCCCTT---CC-GGGGHHHHHHHHHHHHHHHHHHCTTSEEEE--CSSSHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEECCCccCCCC---cc-hhhHHHHHHHHHHHHHHHHHhhCCCcEEEE--ccCCchHHHHHHHHHHHHc
Confidence            99999999988775441   11 22     34456677778888876544333  36677765443 4445443

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=98.16  E-value=3.7e-06  Score=70.02  Aligned_cols=73  Identities=19%  Similarity=0.257  Sum_probs=52.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH-hccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH-VAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a-~~~aD   80 (480)
                      +++.|+|+|.+|..+|..|.+.  |++|+++|.|+++++.+.+.......            +..+-...++++ +.+||
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~--g~~vvvid~d~~~~~~~~~~~~~~~~------------gd~~~~~~l~~a~i~~a~   66 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRM--GHEVLAVDINEEKVNAYASYATHAVI------------ANATEENELLSLGIRNFE   66 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCCCEEEESCHHHHHHTTTTCSEEEE------------CCTTCTTHHHHHTGGGCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCeEEEecCcHHHHHHHHHhCCccee------------eecccchhhhccCCcccc
Confidence            4689999999999999999998  99999999999999998753221110            000000112232 67899


Q ss_pred             EEEEeccC
Q 011654           81 IVFVSVNT   88 (480)
Q Consensus        81 vVii~Vpt   88 (480)
                      .+|++++.
T Consensus        67 ~vi~~~~~   74 (134)
T d2hmva1          67 YVIVAIGA   74 (134)
T ss_dssp             EEEECCCS
T ss_pred             EEEEEcCc
Confidence            99999764

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.15  E-value=9.5e-07  Score=77.64  Aligned_cols=41  Identities=17%  Similarity=0.203  Sum_probs=38.7

Q ss_pred             cEEEEE-cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCI-GAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VI-GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |||+|| |+|.||.++|..|+++  ||+|++|+|++++++.+.+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~--G~~V~l~~R~~e~~~~l~~   42 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATL--GHEIVVGSRREEKAEAKAA   42 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTT--TCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            899999 7999999999999998  9999999999999888775

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.15  E-value=8.8e-06  Score=71.57  Aligned_cols=73  Identities=18%  Similarity=0.278  Sum_probs=54.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~   78 (480)
                      +||||||+|.||...+..|... ++++|+ ++|+++++.+.+.+...              .....++.+|+++.++  +
T Consensus         2 iki~iIG~G~~g~~~~~~l~~~-~~~~i~ai~d~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~ll~~~~   66 (184)
T d1ydwa1           2 IRIGVMGCADIARKVSRAIHLA-PNATISGVASRSLEKAKAFATANN--------------YPESTKIHGSYESLLEDPE   66 (184)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHC-TTEEEEEEECSSHHHHHHHHHHTT--------------CCTTCEEESSHHHHHHCTT
T ss_pred             eEEEEEcCCHHHHHHHHHHHhC-CCCEEEEEEeCCccccccchhccc--------------cccceeecCcHHHhhhccc
Confidence            6999999999999999888764 477877 56999998777654210              0123467788888764  6


Q ss_pred             CcEEEEeccCC
Q 011654           79 ADIVFVSVNTP   89 (480)
Q Consensus        79 aDvVii~Vptp   89 (480)
                      .|+|++|+|+.
T Consensus        67 iD~v~I~tp~~   77 (184)
T d1ydwa1          67 IDALYVPLPTS   77 (184)
T ss_dssp             CCEEEECCCGG
T ss_pred             cceeeecccch
Confidence            79999997754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=98.14  E-value=3e-06  Score=73.58  Aligned_cols=75  Identities=17%  Similarity=0.232  Sum_probs=53.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      +||.|||+|.||.++|..|+++  ||+|+++|++.++.+.+.+.........          ..........+.+...|.
T Consensus         3 K~IliiGaG~~G~~~a~~L~~~--g~~V~v~dr~~~~a~~l~~~~~~~~~~~----------~~~~~~~~~~~~i~~~~~   70 (182)
T d1e5qa1           3 KSVLMLGSGFVTRPTLDVLTDS--GIKVTVACRTLESAKKLSAGVQHSTPIS----------LDVNDDAALDAEVAKHDL   70 (182)
T ss_dssp             CEEEEECCSTTHHHHHHHHHTT--TCEEEEEESCHHHHHHHHTTCTTEEEEE----------CCTTCHHHHHHHHTTSSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhC--CCEEEEEECChHHHHHHHhccccccccc----------ccccchhhhHhhhhccce
Confidence            5899999999999999999998  9999999999999999987421110000          000001123445678899


Q ss_pred             EEEeccC
Q 011654           82 VFVSVNT   88 (480)
Q Consensus        82 Vii~Vpt   88 (480)
                      ++.++|.
T Consensus        71 ~i~~~~~   77 (182)
T d1e5qa1          71 VISLIPY   77 (182)
T ss_dssp             EEECSCG
T ss_pred             eEeeccc
Confidence            9988753

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=2.5e-06  Score=73.75  Aligned_cols=69  Identities=16%  Similarity=0.238  Sum_probs=50.4

Q ss_pred             cEEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||||||+|.||.. ....+... ++++++ ++|+++++.+.+.+.                  -++.+.++.++.+++.
T Consensus         2 iri~iIG~G~~g~~~~~~~l~~~-~~~~i~~v~d~~~~~~~~~~~~------------------~~~~~~~~~~~l~~~~   62 (164)
T d1tlta1           2 LRIGVVGLGGIAQKAWLPVLAAA-SDWTLQGAWSPTRAKALPICES------------------WRIPYADSLSSLAASC   62 (164)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSC-SSEEEEEEECSSCTTHHHHHHH------------------HTCCBCSSHHHHHTTC
T ss_pred             CEEEEEcCCHHHHHHHHHHHHhC-CCcEEEEEEechhHhhhhhhhc------------------ccccccccchhhhhhc
Confidence            69999999999986 45555543 577765 689998877766542                  0123456777777899


Q ss_pred             cEEEEeccCC
Q 011654           80 DIVFVSVNTP   89 (480)
Q Consensus        80 DvVii~Vptp   89 (480)
                      |+|+||+|+.
T Consensus        63 D~V~I~tp~~   72 (164)
T d1tlta1          63 DAVFVHSSTA   72 (164)
T ss_dssp             SEEEECSCTT
T ss_pred             ccccccccch
Confidence            9999998754

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=98.13  E-value=8.4e-06  Score=72.69  Aligned_cols=106  Identities=14%  Similarity=0.186  Sum_probs=71.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.+|..+|..+..-  |.+|++||+....... ..+                    . ...++++.++.||+
T Consensus        44 k~vgIiG~G~IG~~va~~l~~f--g~~V~~~d~~~~~~~~-~~~--------------------~-~~~~l~~~l~~sDi   99 (197)
T d1j4aa1          44 QVVGVVGTGHIGQVFMQIMEGF--GAKVITYDIFRNPELE-KKG--------------------Y-YVDSLDDLYKQADV   99 (197)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCHHHH-HTT--------------------C-BCSCHHHHHHHCSE
T ss_pred             CeEEEecccccchhHHHhHhhh--cccccccCcccccccc-cce--------------------e-eecccccccccccc
Confidence            4799999999999999999876  8999999976443221 111                    1 13567888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|-.....     ...+        ++....++++.++|+.|--+.=..+.|.+.|++.
T Consensus       100 i~~~~plt~~T~-----~li~--------~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~  149 (197)
T d1j4aa1         100 ISLHVPDVPANV-----HMIN--------DESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSG  149 (197)
T ss_dssp             EEECSCCCGGGT-----TCBS--------HHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             ccccCCcccccc-----cccc--------HHHHhhhCCccEEEecCchhhhhhHHHHHHHhcc
Confidence            999998432211     1223        2334567899999987644333345576777664

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=98.12  E-value=3e-06  Score=75.16  Aligned_cols=109  Identities=13%  Similarity=0.142  Sum_probs=75.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.+|..+|..+..-  |.+|.+||+....-.....                   .++....++++.+++||+
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~~~~~~~-------------------~~~~~~~~l~~~l~~sD~  103 (188)
T d2naca1          45 MHVGTVAAGRIGLAVLRRLAPF--DVHLHYTDRHRLPESVEKE-------------------LNLTWHATREDMYPVCDV  103 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHGGG--TCEEEEECSSCCCHHHHHH-------------------HTCEECSSHHHHGGGCSE
T ss_pred             cceeeccccccchhhhhhhhcc--CceEEEEeecccccccccc-------------------ccccccCCHHHHHHhccc
Confidence            5899999999999999999876  8999999985321111111                   123456788888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|......+     -.+        ++....++++.++|+.|--..=..+.|.+.|++.
T Consensus       104 v~~~~plt~~T~~-----li~--------~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g  153 (188)
T d2naca1         104 VTLNCPLHPETEH-----MIN--------DETLKLFKRGAYIVNTARGKLCDRDAVARALESG  153 (188)
T ss_dssp             EEECSCCCTTTTT-----CBS--------HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTT
T ss_pred             hhhcccccccchh-----hhH--------HHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCC
Confidence            9999985432211     222        3455678999999987654333445577777764

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=98.12  E-value=5.9e-06  Score=71.70  Aligned_cols=80  Identities=15%  Similarity=0.190  Sum_probs=54.4

Q ss_pred             cEEEEEcCChhHHHHHH-HHHHcCCC---CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhh-cCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGYVGGPTMA-VIALKCPK---IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQC-RGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~-~La~~~~G---~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~-~~~~l~~t~d~~~a~   76 (480)
                      .||+|||+|.+|.+.+. .+....+.   -+++++|+|+++.+....-        ++...... ...++..++|..+++
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~d~~eal   75 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGA--------CDVFIREKAPDIEFAATTDPEEAF   75 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHH--------HHHHHHHHCTTSEEEEESCHHHHH
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHH--------HHHHHHHhCCCcceEecCChhhcc
Confidence            58999999999987543 33322122   4899999999987743321        11222211 223577899999999


Q ss_pred             ccCcEEEEeccCC
Q 011654           77 AEADIVFVSVNTP   89 (480)
Q Consensus        77 ~~aDvVii~Vptp   89 (480)
                      ++||+||++...+
T Consensus        76 ~~AD~Vvitag~~   88 (167)
T d1u8xx1          76 TDVDFVMAHIRVG   88 (167)
T ss_dssp             SSCSEEEECCCTT
T ss_pred             CCCCEEEECCCcC
Confidence            9999999998654

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=98.05  E-value=4.8e-06  Score=74.00  Aligned_cols=109  Identities=10%  Similarity=0.099  Sum_probs=74.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.+|..+|..+..-  |.+|.+||+..........                   .......++++.++.||+
T Consensus        48 ~tvgIiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~~~~~~~-------------------~~~~~~~~l~~ll~~sD~  106 (191)
T d1gdha1          48 KTLGIYGFGSIGQALAKRAQGF--DMDIDYFDTHRASSSDEAS-------------------YQATFHDSLDSLLSVSQF  106 (191)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCEEEEECSSCCCHHHHHH-------------------HTCEECSSHHHHHHHCSE
T ss_pred             cceEEeecccchHHHHHHHHhh--ccccccccccccccchhhc-------------------ccccccCCHHHHHhhCCe
Confidence            5799999999999999988876  8999999985432111110                   012345678888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|-.....     .-.|        ++....++++.++|+.|=-..=..+.|.+.|++.
T Consensus       107 v~l~~plt~~T~-----~li~--------~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g  156 (191)
T d1gdha1         107 FSLNAPSTPETR-----YFFN--------KATIKSLPQGAIVVNTARGDLVDNELVVAALEAG  156 (191)
T ss_dssp             EEECCCCCTTTT-----TCBS--------HHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHT
T ss_pred             EEecCCCCchHh-----heec--------HHHhhCcCCccEEEecCCccchhhHHHHHHHHcC
Confidence            999988533211     1222        3455678999999987654443445677777764

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.04  E-value=1.8e-05  Score=65.62  Aligned_cols=41  Identities=20%  Similarity=0.222  Sum_probs=38.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |||.|+|+|.+|..+|..|.+.  |++|+++|.|+++++.+.+
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~--g~~v~vid~d~~~~~~~~~   41 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEK--GHDIVLIDIDKDICKKASA   41 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCCcceecCChhhhhhhhh
Confidence            8999999999999999999998  9999999999999998864

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.99  E-value=1.1e-05  Score=71.17  Aligned_cols=107  Identities=19%  Similarity=0.164  Sum_probs=74.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++++|||+|.+|..+|..+..-  |.+|++||+....-.....                    ..+ ..++++.++.||+
T Consensus        45 k~vgiiG~G~IG~~va~~~~~f--g~~v~~~d~~~~~~~~~~~--------------------~~~-~~~l~ell~~sDi  101 (184)
T d1ygya1          45 KTVGVVGLGRIGQLVAQRIAAF--GAYVVAYDPYVSPARAAQL--------------------GIE-LLSLDDLLARADF  101 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCEEEEECTTSCHHHHHHH--------------------TCE-ECCHHHHHHHCSE
T ss_pred             eeeeeccccchhHHHHHHhhhc--cceEEeecCCCChhHHhhc--------------------Cce-eccHHHHHhhCCE
Confidence            5799999999999999988765  8999999986543322221                    122 2467888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|-.....     .-.+        ++....++++.++|+.|=-+.=..+.|.+.|++.
T Consensus       102 v~~~~Plt~~T~-----~lin--------~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~  151 (184)
T d1ygya1         102 ISVHLPKTPETA-----GLID--------KEALAKTKPGVIIVNAARGGLVDEAALADAITGG  151 (184)
T ss_dssp             EEECCCCSTTTT-----TCBC--------HHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTS
T ss_pred             EEEcCCCCchhh-----hhhh--------HHHHhhhCCCceEEEecchhhhhhHHHHHHHhcC
Confidence            999998532211     1222        2455678999999987754433445677777664

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.98  E-value=9e-06  Score=70.21  Aligned_cols=76  Identities=20%  Similarity=0.194  Sum_probs=54.8

Q ss_pred             cEEEEEcCChhHHHHHHH-HHHc---CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHh--hcCCCEEEecCHHHH
Q 011654            2 VKICCIGAGYVGGPTMAV-IALK---CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQ--CRGRNLFFSTDIEKH   75 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~-La~~---~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~--~~~~~l~~t~d~~~a   75 (480)
                      |||+|||+|.+|.+++.. ++..   .+..++.++|+|+++.+....            +...  ........+++..++
T Consensus         1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d------------~~~~~~~~~~~~~~t~~~~~~   68 (162)
T d1up7a1           1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVD------------FVKRLVKDRFKVLISDTFEGA   68 (162)
T ss_dssp             CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHH------------HHHHHHTTSSEEEECSSHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHH------------HHHhhhccCceEEEecCcccc
Confidence            899999999999888854 3322   124589999999998765332            1111  112346778888889


Q ss_pred             hccCcEEEEeccCC
Q 011654           76 VAEADIVFVSVNTP   89 (480)
Q Consensus        76 ~~~aDvVii~Vptp   89 (480)
                      +++||+|+++...+
T Consensus        69 l~~aDvVVita~~~   82 (162)
T d1up7a1          69 VVDAKYVIFQFRPG   82 (162)
T ss_dssp             HTTCSEEEECCCTT
T ss_pred             cCCCCEEEEecccC
Confidence            99999999998654

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=97.96  E-value=1.7e-05  Score=68.13  Aligned_cols=70  Identities=20%  Similarity=0.337  Sum_probs=55.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|.|||+|-||..++..|...  |. ++++++|+.++.+.+.+..                .......++..+.+.++|
T Consensus        25 ~~ilviGaG~~g~~v~~~L~~~--g~~~i~v~nRt~~ka~~l~~~~----------------~~~~~~~~~~~~~l~~~D   86 (159)
T d1gpja2          25 KTVLVVGAGEMGKTVAKSLVDR--GVRAVLVANRTYERAVELARDL----------------GGEAVRFDELVDHLARSD   86 (159)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHH--CCSEEEEECSSHHHHHHHHHHH----------------TCEECCGGGHHHHHHTCS
T ss_pred             CeEEEECCCHHHHHHHHHHHhc--CCcEEEEEcCcHHHHHHHHHhh----------------hcccccchhHHHHhccCC
Confidence            5799999999999999999998  76 7999999999988776520                011122345667788999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||.|+++|
T Consensus        87 ivi~atss~   95 (159)
T d1gpja2          87 VVVSATAAP   95 (159)
T ss_dssp             EEEECCSSS
T ss_pred             EEEEecCCC
Confidence            999998765

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=1.5e-05  Score=70.52  Aligned_cols=105  Identities=17%  Similarity=0.180  Sum_probs=73.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.+|..+|..+..-  |.+|++||+....         ..              .......++++.++.||+
T Consensus        45 ~~vgiiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~---------~~--------------~~~~~~~~l~ell~~sDi   99 (188)
T d1sc6a1          45 KKLGIIGYGHIGTQLGILAESL--GMYVYFYDIENKL---------PL--------------GNATQVQHLSDLLNMSDV   99 (188)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCC---------CC--------------TTCEECSCHHHHHHHCSE
T ss_pred             eEEEEeecccchhhhhhhcccc--cceEeeccccccc---------hh--------------hhhhhhhhHHHHHhhccc
Confidence            5899999999999999988776  9999999975320         00              112334678888999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|-.....     ...|        ++..+.++++.++|+.|--+.=..+.|.+.|++.
T Consensus       100 i~i~~plt~~T~-----~li~--------~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~  149 (188)
T d1sc6a1         100 VSLHVPENPSTK-----NMMG--------AKEISLMKPGSLLINASRGTVVDIPALADALASK  149 (188)
T ss_dssp             EEECCCSSTTTT-----TCBC--------HHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTT
T ss_pred             eeecccCCcchh-----hhcc--------HHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcC
Confidence            999998432211     1223        3445668899999987654444455677777664

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=97.95  E-value=0.0001  Score=61.80  Aligned_cols=116  Identities=20%  Similarity=0.244  Sum_probs=68.6

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCH--HHHHHHHCCCCCCCCCChHHHHHhhcCCCEE-EecCHHHHhc
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISV--SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF-FSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~--~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~-~t~d~~~a~~   77 (480)
                      .||+||| .|.+|.++|..+..+...-++.++|++.  +..+....        ++..... . ....+ .+.++++ ++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~--------Dl~~~~~-~-~~~~~i~~~~~~~-~~   69 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAA--------DTNHGIA-Y-DSNTRVRQGGYED-TA   69 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHH--------HHHHHHT-T-TCCCEEEECCGGG-GT
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeec--------chhhccc-c-cCCceEeeCCHHH-hh
Confidence            4899999 6999999999999873334899999753  33221111        0111000 1 11222 3456665 89


Q ss_pred             cCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           78 EADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      +||+|+++...|....   .++    ..+...+++..++|.++.+++.+++  -|.|...
T Consensus        70 ~aDiVvitaG~~~~~g---~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~iv--vtNPvDv  124 (142)
T d1o6za1          70 GSDVVVITAGIPRQPG---QTRIDLAGDNAPIMEDIQSSLDEHNDDYISLT--TSNPVDL  124 (142)
T ss_dssp             TCSEEEECCCCCCCTT---CCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEE--CCSSHHH
T ss_pred             hcCEEEEecccccccC---CchhhHHHHHHHHHHHHHHHHHhcCCCceEEE--ecChHHH
Confidence            9999999987665431   110    1124556666677777765444333  3667654

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.93  E-value=1.1e-05  Score=72.15  Aligned_cols=105  Identities=12%  Similarity=0.184  Sum_probs=72.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|+|||+|.+|..+|..+..-  |.+|++||+.+..      ..                ...... .++++.++.||+
T Consensus        46 ktvgIiG~G~IG~~va~~l~~f--g~~v~~~d~~~~~------~~----------------~~~~~~-~~l~~l~~~~D~  100 (199)
T d1dxya1          46 QTVGVMGTGHIGQVAIKLFKGF--GAKVIAYDPYPMK------GD----------------HPDFDY-VSLEDLFKQSDV  100 (199)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSCCS------SC----------------CTTCEE-CCHHHHHHHCSE
T ss_pred             eeeeeeeccccccccccccccc--ceeeeccCCccch------hh----------------hcchhH-HHHHHHHHhccc
Confidence            4799999999999999999876  9999999985321      10                012233 468888899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      |++++|......     .-.|        ++....++++.++|+.|--..=..+.|.+.|++.
T Consensus       101 v~~~~plt~~T~-----~li~--------~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g  150 (199)
T d1dxya1         101 IDLHVPGIEQNT-----HIIN--------EAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSG  150 (199)
T ss_dssp             EEECCCCCGGGT-----TSBC--------HHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTT
T ss_pred             ceeeeccccccc-----cccc--------HHHhhccCCceEEEecccHhhhhhHHHHHHHhcC
Confidence            999998543221     1223        2344568899999987754433445566667653

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=97.92  E-value=2.5e-05  Score=68.41  Aligned_cols=71  Identities=13%  Similarity=0.146  Sum_probs=50.6

Q ss_pred             cEEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--
Q 011654            2 VKICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--   77 (480)
                      +||+|||+|.+|.. .+..+.+....++++ ++|+++++.+.+.+..                 +.....+|+++.++  
T Consensus         4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~-----------------~~~~~~~~~~ell~~~   66 (181)
T d1zh8a1           4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV-----------------GNPAVFDSYEELLESG   66 (181)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH-----------------SSCEEESCHHHHHHSS
T ss_pred             cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccc-----------------cccceeeeeecccccc
Confidence            37999999999986 466666531135666 6899999888766420                 22356788888775  


Q ss_pred             cCcEEEEeccCC
Q 011654           78 EADIVFVSVNTP   89 (480)
Q Consensus        78 ~aDvVii~Vptp   89 (480)
                      +.|+|+||+|+.
T Consensus        67 ~id~v~I~tp~~   78 (181)
T d1zh8a1          67 LVDAVDLTLPVE   78 (181)
T ss_dssp             CCSEEEECCCGG
T ss_pred             ccceeecccccc
Confidence            579999998754

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=97.89  E-value=1.8e-05  Score=67.59  Aligned_cols=117  Identities=17%  Similarity=0.227  Sum_probs=70.9

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcC-CC----CeEEEEe--CCHHHHHHHHCCCCCCCCCChHHHHHhh---cCCCEEEec
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKC-PK----IEVAVVD--ISVSRIAAWNGDQLPIYEPGLEDVVTQC---RGRNLFFST   70 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~-~G----~~V~~~D--~~~~~v~~l~~~~~~~~e~~l~~l~~~~---~~~~l~~t~   70 (480)
                      |||+|||+ |.+|.++|..|+... -+    ....++|  .+.++.+.+...            +...   .......++
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~   72 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKALEGVVME------------LEDCAFPLLAGLEATD   72 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH------------HHTTTCTTEEEEEEES
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhHcCchhh------------hhccccccccccccCC
Confidence            79999997 999999999998751 01    1123333  344444433210            0000   012356677


Q ss_pred             CHHHHhccCcEEEEeccCCCCcCCCCCCC----CCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           71 DIEKHVAEADIVFVSVNTPTKTQGLGAGK----AADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~----~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      +..++++++|+|+++-..|..+..   ++    ..+...+++..+.|.++.+++.+|++- |.|....
T Consensus        73 ~~~~~~~~advViitaG~~~~pg~---~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivv-sNPvDv~  136 (154)
T d1y7ta1          73 DPKVAFKDADYALLVGAAPRKAGM---ERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVV-GNPANTN  136 (154)
T ss_dssp             CHHHHTTTCSEEEECCCCCCCTTC---CHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEC-SSSHHHH
T ss_pred             chhhhcccccEEEeecCcCCCCCC---cHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEe-cCcHHHH
Confidence            777789999999999876654311   10    113456677777888888777766543 4565543

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=6.7e-05  Score=64.10  Aligned_cols=88  Identities=14%  Similarity=0.072  Sum_probs=65.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR-IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++++|+|.|.+|..+|..+...  |.+|+++|++|-+ +++...|                    +.+ ...++++..+|
T Consensus        25 k~v~V~GyG~iG~g~A~~~rg~--G~~V~v~e~dp~~al~A~~dG--------------------~~v-~~~~~a~~~ad   81 (163)
T d1li4a1          25 KVAVVAGYGDVGKGCAQALRGF--GARVIITEIDPINALQAAMEG--------------------YEV-TTMDEACQEGN   81 (163)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTT--------------------CEE-CCHHHHTTTCS
T ss_pred             CEEEEeccccccHHHHHHHHhC--CCeeEeeecccchhHHhhcCc--------------------eEe-eehhhhhhhcc
Confidence            4799999999999999999988  9999999999953 4433332                    333 45788899999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv  129 (480)
                      +++.|+.+..         ..+        .+-.+.++++.++.+.+..
T Consensus        82 ivvtaTGn~~---------vI~--------~eh~~~MKdgaIL~N~Ghf  113 (163)
T d1li4a1          82 IFVTTTGCID---------IIL--------GRHFEQMKDDAIVCNIGHF  113 (163)
T ss_dssp             EEEECSSCSC---------SBC--------HHHHTTCCTTEEEEECSSS
T ss_pred             EEEecCCCcc---------chh--------HHHHHhccCCeEEEEeccc
Confidence            9999976531         122        2334568899988875544

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=97.81  E-value=1.9e-05  Score=67.86  Aligned_cols=101  Identities=22%  Similarity=0.279  Sum_probs=72.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE-Eec---CHHHHhc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF-FST---DIEKHVA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~-~t~---d~~~a~~   77 (480)
                      -||.|||.|..|+.-+......  |-+|+++|+++++.+++.+..            .    +.+. ...   .+++.++
T Consensus        33 a~V~ViGaGvaG~~A~~~A~~l--GA~V~~~D~~~~~l~~l~~~~------------~----~~~~~~~~~~~~l~~~~~   94 (168)
T d1pjca1          33 GKVVILGGGVVGTEAAKMAVGL--GAQVQIFDINVERLSYLETLF------------G----SRVELLYSNSAEIETAVA   94 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH------------G----GGSEEEECCHHHHHHHHH
T ss_pred             cEEEEECCChHHHHHHHHHhhC--CCEEEEEeCcHHHHHHHHHhh------------c----ccceeehhhhhhHHHhhc
Confidence            3899999999999988777776  999999999999998877421            0    1111 111   3566789


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVK  132 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g  132 (480)
                      +||+||-++--|-..       .|-+     +-++..+.+++|.+||+.|.=..|
T Consensus        95 ~aDivI~aalipG~~-------aP~l-----It~~mv~~Mk~GSVIVDvaidqGG  137 (168)
T d1pjca1          95 EADLLIGAVLVPGRR-------APIL-----VPASLVEQMRTGSVIVDVAVDQGG  137 (168)
T ss_dssp             TCSEEEECCCCTTSS-------CCCC-----BCHHHHTTSCTTCEEEETTCTTCC
T ss_pred             cCcEEEEeeecCCcc-------cCee-----ecHHHHhhcCCCcEEEEeecCCCC
Confidence            999999998765322       2322     245677889999999987653333

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.79  E-value=6.3e-05  Score=65.16  Aligned_cols=80  Identities=21%  Similarity=0.240  Sum_probs=50.1

Q ss_pred             cEEEEEcCChhHHH--HHHHHHHcC--CCCeEEEEeCCHHH--HHHHHCCCCCCCCCChHHHHHh-hcCCCEEEecCHHH
Q 011654            2 VKICCIGAGYVGGP--TMAVIALKC--PKIEVAVVDISVSR--IAAWNGDQLPIYEPGLEDVVTQ-CRGRNLFFSTDIEK   74 (480)
Q Consensus         2 mkI~VIGlG~~G~~--lA~~La~~~--~G~~V~~~D~~~~~--v~~l~~~~~~~~e~~l~~l~~~-~~~~~l~~t~d~~~   74 (480)
                      |||+|||+|.+|.+  ++..+....  +.-++.++|+++++  .+.+..-        ....... -..-++..++|..+
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~--------~~~~~~~~~~~~~~~~~td~~~   73 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGAL--------AKRMVEKAGVPIEIHLTLDRRR   73 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHH--------HHHHHHHTTCCCEEEEESCHHH
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHH--------HHHHHHhcCCCceeeecCCchh
Confidence            79999999988754  344444321  12489999998854  3332210        0000111 11234678899888


Q ss_pred             HhccCcEEEEeccCC
Q 011654           75 HVAEADIVFVSVNTP   89 (480)
Q Consensus        75 a~~~aDvVii~Vptp   89 (480)
                      ++++||+|+++...+
T Consensus        74 al~gaDvVv~ta~~~   88 (169)
T d1s6ya1          74 ALDGADFVTTQFRVG   88 (169)
T ss_dssp             HHTTCSEEEECCCTT
T ss_pred             hcCCCCEEEEccccC
Confidence            899999999998754

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.75  E-value=3.7e-05  Score=65.98  Aligned_cols=109  Identities=14%  Similarity=0.152  Sum_probs=79.9

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      ||+|+|+..          ....+++.|.++|++|.+||..-...+....                      .....+.+
T Consensus         2 kIgiIGlG~----------MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~----------------------~~~~~~~~   49 (161)
T d1vpda2           2 KVGFIGLGI----------MGKPMSKNLLKAGYSLVVSDRNPEAIADVIA----------------------AGAETAST   49 (161)
T ss_dssp             EEEEECCST----------THHHHHHHHHHTTCEEEEECSCHHHHHHHHH----------------------TTCEECSS
T ss_pred             EEEEEehhH----------HHHHHHHHHHHCCCeEEEEeCCcchhHHHHH----------------------hhhhhccc
Confidence            799999965          8999999999999999999976443222221                      23456789


Q ss_pred             HHHhcccccEEEEEeccc-ccccccH--HHHHHhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEec
Q 011654          406 AYQAAKDAHGVCILTEWD-EFKTLDY--QKIFDNMRKPAYIFDGRNILDV------EKLREIGFIVYSIG  466 (480)
Q Consensus       406 ~~~a~~~ad~vvi~t~h~-~~~~~~~--~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG  466 (480)
                      +.++++++|++++++..+ ..+++-.  ..+...+++..+|+|+....+.      +.+++.|+.|..-.
T Consensus        50 ~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdap  119 (161)
T d1vpda2          50 AKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAP  119 (161)
T ss_dssp             HHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEEEECC
T ss_pred             HHHHHhCCCeEEEEcCCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCceeccc
Confidence            999999999999998654 3433211  3466667777899999997753      34556688887643

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.74  E-value=1.8e-05  Score=68.77  Aligned_cols=65  Identities=18%  Similarity=0.474  Sum_probs=47.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +||+|||+|.||...+..+... ++++++ ++|++++..     .                 ........+..+...+.|
T Consensus         4 irvgiiG~G~ig~~~~~~l~~~-~~~elvav~~~~~~~~-----~-----------------~~~~~~~~~~~~~~~~~D   60 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLIAKQ-PDMDLVGIFSRRATLD-----T-----------------KTPVFDVADVDKHADDVD   60 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTC-SSEEEEEEEESSSCCS-----S-----------------SSCEEEGGGGGGTTTTCS
T ss_pred             ceEEEECChHHHHHHHHHHHhC-CCcEEEEEEecccccc-----c-----------------ccccccchhhhhhccccc
Confidence            4799999999999999888764 578766 567764311     0                 113455667677678999


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +|++|+|+.
T Consensus        61 ~Vvi~tp~~   69 (170)
T d1f06a1          61 VLFLCMGSA   69 (170)
T ss_dssp             EEEECSCTT
T ss_pred             eEEEeCCCc
Confidence            999998764

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.71  E-value=4.5e-05  Score=65.04  Aligned_cols=116  Identities=13%  Similarity=0.210  Sum_probs=72.6

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcC-CC----CeEEEEeCCHH--HHHHHHCCCCCCCCCChHHHHHhh---cCCCEEEec
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKC-PK----IEVAVVDISVS--RIAAWNGDQLPIYEPGLEDVVTQC---RGRNLFFST   70 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~-~G----~~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~l~~~~---~~~~l~~t~   70 (480)
                      |||+|||+ |.+|.++|..|+... -+    .+..++|+++.  +.+.+.-.            +...   .......++
T Consensus         4 ~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~------------~~~~~~~~~~~~~~~~   71 (154)
T d5mdha1           4 IRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLME------------LQDCALPLLKDVIATD   71 (154)
T ss_dssp             EEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHH------------HHHTCCTTEEEEEEES
T ss_pred             eEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhh------------hcccccccccccccCc
Confidence            79999995 999999999998641 01    25777887653  33332210            0000   012356677


Q ss_pred             CHHHHhccCcEEEEeccCCCCcCCCCCCCCCC-----hHHHHHHHHHHHhhCCCCCEEEEecCCccchH
Q 011654           71 DIEKHVAEADIVFVSVNTPTKTQGLGAGKAAD-----LTYWESAARMIANVSNSNKIVVEKSTVPVKTA  134 (480)
Q Consensus        71 d~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d-----~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~  134 (480)
                      +..++++++|+|+++-..|..+.   .+ +.|     ...+++....|.++.+...++++ -|.|....
T Consensus        72 ~~~~~~~~~dvVVitag~~~~~g---~s-r~dll~~N~~i~k~~~~~i~k~a~~~~~iiv-vsNPvD~m  135 (154)
T d5mdha1          72 KEEIAFKDLDVAILVGSMPRRDG---ME-RKDLLKANVKIFKCQGAALDKYAKKSVKVIV-VGNPANTN  135 (154)
T ss_dssp             CHHHHTTTCSEEEECCSCCCCTT---CC-TTTTHHHHHHHHHHHHHHHHHHSCTTCEEEE-CSSSHHHH
T ss_pred             ccccccCCceEEEEecccCCCCC---Cc-hhHHHHHhHHHHHHHHHHHHhhCCCceEEEE-ecCcHHHH
Confidence            87888999999999987776541   11 223     35566677778888776654443 35665543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=97.67  E-value=8.9e-05  Score=65.60  Aligned_cols=104  Identities=15%  Similarity=0.195  Sum_probs=78.8

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +..+.+++|+|+|+.          .-+..+++.|..-|.+|.+|||+........                       .
T Consensus        44 ~~eL~gktvgIiG~G----------~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~-----------------------~   90 (193)
T d1mx3a1          44 AARIRGETLGIIGLG----------RVGQAVALRAKAFGFNVLFYDPYLSDGVERA-----------------------L   90 (193)
T ss_dssp             CCCCTTCEEEEECCS----------HHHHHHHHHHHTTTCEEEEECTTSCTTHHHH-----------------------H
T ss_pred             ceeeeCceEEEeccc----------cccccceeeeeccccceeeccCcccccchhh-----------------------h
Confidence            346889999999984          4678999999999999999999987643321                       1


Q ss_pred             ceeeecCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      ++....++++.++.+|+|+++.+..+ -+.+=-.+..+.|++.+++|.+.+  ++|.+.+
T Consensus        91 ~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL  150 (193)
T d1mx3a1          91 GLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKAL  150 (193)
T ss_dssp             TCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHH
T ss_pred             ccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHH
Confidence            24556789999999999999888643 333322455678998889999865  7776543

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=2.5e-05  Score=69.66  Aligned_cols=75  Identities=27%  Similarity=0.309  Sum_probs=53.3

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |+||.|+| .|.+|..++..|.++  ||+|++++|++++..........+..            +.+.-.+++.++++++
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~--g~~V~~~~R~~~~~~~~~~~~~~~~~------------gD~~d~~~l~~al~~~   68 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQA--GYEVTVLVRDSSRLPSEGPRPAHVVV------------GDVLQAADVDKTVAGQ   68 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCGGGSCSSSCCCSEEEE------------SCTTSHHHHHHHHTTC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHC--cCEEEEEEcChhhccccccccccccc------------ccccchhhHHHHhcCC
Confidence            57999999 699999999999998  99999999998875433221111110            1111123456678999


Q ss_pred             cEEEEeccCC
Q 011654           80 DIVFVSVNTP   89 (480)
Q Consensus        80 DvVii~Vptp   89 (480)
                      |+||.|++..
T Consensus        69 d~vi~~~g~~   78 (205)
T d1hdoa_          69 DAVIVLLGTR   78 (205)
T ss_dssp             SEEEECCCCT
T ss_pred             CEEEEEeccC
Confidence            9999998754

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=97.62  E-value=0.00014  Score=63.24  Aligned_cols=119  Identities=16%  Similarity=0.151  Sum_probs=73.7

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcC-CC----CeEEEEeCCHH--HHHHHHCC--CCCCCCCChHHHHHhhcCCCEEEecC
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKC-PK----IEVAVVDISVS--RIAAWNGD--QLPIYEPGLEDVVTQCRGRNLFFSTD   71 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~-~G----~~V~~~D~~~~--~v~~l~~~--~~~~~e~~l~~l~~~~~~~~l~~t~d   71 (480)
                      .||+|+|+ |.+|.+++..|+... -|    ..+.++|+++.  .++.+.-.  ....  +         .......+++
T Consensus        25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~--~---------~~~~~~~~~~   93 (175)
T d7mdha1          25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLY--P---------LLREVSIGID   93 (175)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTC--T---------TEEEEEEESC
T ss_pred             cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhccccc--c---------cccCcccccc
Confidence            38999996 999999999998741 02    25667787653  33322210  0000  0         0123567888


Q ss_pred             HHHHhccCcEEEEeccCCCCcCCCCCCCCC-----ChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHH
Q 011654           72 IEKHVAEADIVFVSVNTPTKTQGLGAGKAA-----DLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEA  136 (480)
Q Consensus        72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~-----d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~  136 (480)
                      ..++++++|+||++-..|..+.   .+ +.     +...+++..+.|.++.+++.+|+.- |.|..+.-.
T Consensus        94 ~~~~~~~aDvVvi~ag~~rkpg---~t-R~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv-~NPvd~~t~  158 (175)
T d7mdha1          94 PYEVFEDVDWALLIGAKPRGPG---ME-RAALLDINGQIFADQGKALNAVASKNVKVLVV-GNPCNTNAL  158 (175)
T ss_dssp             HHHHTTTCSEEEECCCCCCCTT---CC-HHHHHHHHHHHHHHHHHHHHHHSCTTCEEEEC-SSSHHHHHH
T ss_pred             chhhccCCceEEEeeccCCCCC---Cc-HHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEe-cCcHHHHHH
Confidence            8888999999999987665431   11 12     2344566677888888877766543 456665443

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=97.57  E-value=0.0001  Score=66.69  Aligned_cols=74  Identities=11%  Similarity=0.133  Sum_probs=51.0

Q ss_pred             EEEEEcCChhHHH-HHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--c
Q 011654            3 KICCIGAGYVGGP-TMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--E   78 (480)
Q Consensus         3 kI~VIGlG~~G~~-lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~   78 (480)
                      ||||||+|.||.. +...+... ++.+|+ ++|+++++.+.+.+...      +       ........+|+++.++  +
T Consensus        35 riaiIG~G~~~~~~~~~~~~~~-~~~~ivav~d~~~~~a~~~~~~~~------i-------~~~~~~~~~d~~ell~~~~  100 (221)
T d1h6da1          35 GYAIVGLGKYALNQILPGFAGC-QHSRIEALVSGNAEKAKIVAAEYG------V-------DPRKIYDYSNFDKIAKDPK  100 (221)
T ss_dssp             EEEEECCSHHHHHTHHHHTTTC-SSEEEEEEECSCHHHHHHHHHHTT------C-------CGGGEECSSSGGGGGGCTT
T ss_pred             EEEEEcCcHHHHHHHHHHHHhC-CCceEEEEecCCHHHHHHHHHhhc------c-------ccccccccCchhhhccccc
Confidence            7999999999975 44555443 477777 78999999887765210      0       0113445677887664  5


Q ss_pred             CcEEEEeccCCC
Q 011654           79 ADIVFVSVNTPT   90 (480)
Q Consensus        79 aDvVii~Vptp~   90 (480)
                      .|+|+||+|...
T Consensus       101 iD~V~I~tp~~~  112 (221)
T d1h6da1         101 IDAVYIILPNSL  112 (221)
T ss_dssp             CCEEEECSCGGG
T ss_pred             ceeeeeccchhh
Confidence            799999987543

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=5.2e-05  Score=58.77  Aligned_cols=68  Identities=13%  Similarity=0.198  Sum_probs=47.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH--HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS--RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~--~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      .||.|+|+|..|.++|..|+++  |++|+++|.++.  ..+.++.                  ...+.+.....+.+.+.
T Consensus         6 K~v~ViGlG~sG~s~a~~L~~~--g~~v~~~D~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~   65 (93)
T d2jfga1           6 KNVVIIGLGLTGLSCVDFFLAR--GVTPRVMDTRMTPPGLDKLPE------------------AVERHTGSLNDEWLMAA   65 (93)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCCCEEEESSSSCTTGGGSCT------------------TSCEEESBCCHHHHHHC
T ss_pred             CEEEEEeECHHHHHHHHHHHHC--CCEEEEeeCCcCchhHHHHhh------------------ccceeecccchhhhccC
Confidence            4799999999999999999998  999999998543  1111111                  11233333334457899


Q ss_pred             cEEEEeccCC
Q 011654           80 DIVFVSVNTP   89 (480)
Q Consensus        80 DvVii~Vptp   89 (480)
                      |.||++-.-|
T Consensus        66 d~vi~SPGi~   75 (93)
T d2jfga1          66 DLIVASPGIA   75 (93)
T ss_dssp             SEEEECTTSC
T ss_pred             CEEEECCCCC
Confidence            9999985443

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.54  E-value=8.8e-05  Score=63.63  Aligned_cols=94  Identities=13%  Similarity=0.098  Sum_probs=68.2

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      ||+|+|+..          ....+++.|.++|.+|.+||+.-...+...+.+                     .+....+
T Consensus         2 kI~iIG~G~----------mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~---------------------~~~~~~~   50 (165)
T d2f1ka2           2 KIGVVGLGL----------IGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQ---------------------LVDEAGQ   50 (165)
T ss_dssp             EEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT---------------------SCSEEES
T ss_pred             EEEEEeecH----------HHHHHHHHHHHCCCEEEEEECCchHHHHHHHhh---------------------ccceeee
Confidence            799999866          778899999999999999999743322222211                     1222334


Q ss_pred             HHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011654          406 AYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       406 ~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~  451 (480)
                      ..++++++|+|+++++...+.+ -++++...+.+..+|+|+.+.-.
T Consensus        51 ~~~~~~~~DiIilavp~~~~~~-vl~~l~~~l~~~~iv~~~~s~~~   95 (165)
T d2f1ka2          51 DLSLLQTAKIIFLCTPIQLILP-TLEKLIPHLSPTAIVTDVASVKT   95 (165)
T ss_dssp             CGGGGTTCSEEEECSCHHHHHH-HHHHHGGGSCTTCEEEECCSCCH
T ss_pred             ecccccccccccccCcHhhhhh-hhhhhhhhcccccceeeccccch
Confidence            4578899999999998776655 34677777777789999987743

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.51  E-value=0.00019  Score=62.69  Aligned_cols=96  Identities=17%  Similarity=0.183  Sum_probs=74.1

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+.          .-+..+++.|..-|++|.+|||...+.                            ..
T Consensus        39 ~l~gk~vgIiG~G----------~IG~~va~~l~~~g~~v~~~d~~~~~~----------------------------~~   80 (181)
T d1qp8a1          39 LIQGEKVAVLGLG----------EIGTRVGKILAALGAQVRGFSRTPKEG----------------------------PW   80 (181)
T ss_dssp             CCTTCEEEEESCS----------THHHHHHHHHHHTTCEEEEECSSCCCS----------------------------SS
T ss_pred             cccCceEEEeccc----------cccccceeeeecccccccccccccccc----------------------------ce
Confidence            4789999999985          478899999999999999999975421                            11


Q ss_pred             eeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      .+.+++++.++.+|+|+++++- ++-++ ++ .+..+.|++.+++|++.+  ++|.+.+
T Consensus        81 ~~~~~l~ell~~sDiv~~~~pl~~~t~~li~-~~~l~~mk~~ailIN~~RG~ivd~~aL  138 (181)
T d1qp8a1          81 RFTNSLEEALREARAAVCALPLNKHTRGLVK-YQHLALMAEDAVFVNVGRAEVLDRDGV  138 (181)
T ss_dssp             CCBSCSHHHHTTCSEEEECCCCSTTTTTCBC-HHHHTTSCTTCEEEECSCGGGBCHHHH
T ss_pred             eeeechhhhhhccchhhcccccccccccccc-cceeeeccccceEEeccccccccchhh
Confidence            2346789999999999998765 34444 45 456688998889999865  6776654

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=97.50  E-value=0.00018  Score=63.72  Aligned_cols=101  Identities=13%  Similarity=0.071  Sum_probs=76.4

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +..+.+++|+|+|+.          +-+..+++.|..-|.+|.+|||.........                        
T Consensus        38 g~el~gk~vgIiG~G----------~IG~~va~~l~~fg~~V~~~d~~~~~~~~~~------------------------   83 (197)
T d1j4aa1          38 GREVRDQVVGVVGTG----------HIGQVFMQIMEGFGAKVITYDIFRNPELEKK------------------------   83 (197)
T ss_dssp             BCCGGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCHHHHHT------------------------
T ss_pred             CccccCCeEEEeccc----------ccchhHHHhHhhhcccccccCcccccccccc------------------------
Confidence            456789999999985          3789999999999999999999987543221                        


Q ss_pred             ceeeecCHHHhcccccEEEEEecccc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDE-FKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~-~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                       .....++++.++.+|+|+++.+..+ -+. ++. +..+.|++.+++|.+.+  ++|.+.+
T Consensus        84 -~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~-~~l~~mk~~a~lIN~sRG~ivde~aL  142 (197)
T d1j4aa1          84 -GYYVDSLDDLYKQADVISLHVPDVPANVHMIND-ESIAKMKQDVVIVNVSRGPLVDTDAV  142 (197)
T ss_dssp             -TCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSH-HHHHHSCTTEEEEECSCGGGBCHHHH
T ss_pred             -eeeeccccccccccccccccCCccccccccccH-HHHhhhCCccEEEecCchhhhhhHHH
Confidence             1234688999999999999987633 333 454 44578888889999855  7776554

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=97.49  E-value=0.00027  Score=62.22  Aligned_cols=104  Identities=12%  Similarity=0.128  Sum_probs=79.4

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +..+.+++|+|+|+.-          -...+++.|..-|.+|.+|||...........                      
T Consensus        42 ~~~l~g~tvgIiG~G~----------IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~----------------------   89 (191)
T d1gdha1          42 GEKLDNKTLGIYGFGS----------IGQALAKRAQGFDMDIDYFDTHRASSSDEASY----------------------   89 (191)
T ss_dssp             BCCCTTCEEEEECCSH----------HHHHHHHHHHTTTCEEEEECSSCCCHHHHHHH----------------------
T ss_pred             cceecccceEEeeccc----------chHHHHHHHHhhccccccccccccccchhhcc----------------------
Confidence            3466799999999854          77899999999999999999987754332221                      


Q ss_pred             ceeeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      .....+++++.++.+|+|+++.+. ++-+. ++ .+..+.|++.+++|.+.+  ++|.+.+
T Consensus        90 ~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~-~~~l~~mk~~a~lIN~sRG~ivde~aL  149 (191)
T d1gdha1          90 QATFHDSLDSLLSVSQFFSLNAPSTPETRYFFN-KATIKSLPQGAIVVNTARGDLVDNELV  149 (191)
T ss_dssp             TCEECSSHHHHHHHCSEEEECCCCCTTTTTCBS-HHHHTTSCTTEEEEECSCGGGBCHHHH
T ss_pred             cccccCCHHHHHhhCCeEEecCCCCchHhheec-HHHhhCcCCccEEEecCCccchhhHHH
Confidence            234567899999999999999888 44444 45 566688998889999865  7786653

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.48  E-value=0.00023  Score=60.89  Aligned_cols=111  Identities=16%  Similarity=0.188  Sum_probs=79.5

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      ++|+++|+..          ....+++.|.++|++|.+||-.....+....                      .......
T Consensus         2 ~kIg~IGlG~----------MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~----------------------~~~~~~~   49 (162)
T d3cuma2           2 KQIAFIGLGH----------MGAPMATNLLKAGYLLNVFDLVQSAVDGLVA----------------------AGASAAR   49 (162)
T ss_dssp             CEEEEECCST----------THHHHHHHHHHTTCEEEEECSSHHHHHHHHH----------------------TTCEECS
T ss_pred             CEEEEEEEHH----------HHHHHHHHHHHCCCeEEEEECchhhhhhhhh----------------------hhccccc
Confidence            4799999965          8899999999999999999975433222211                      2345667


Q ss_pred             CHHHhcccccEEEEEecccc-cccc--cHHHHHHhcCCCCEEEEcCCCCCh------HHHhhcCcEEEEecC
Q 011654          405 DAYQAAKDAHGVCILTEWDE-FKTL--DYQKIFDNMRKPAYIFDGRNILDV------EKLREIGFIVYSIGK  467 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~-~~~~--~~~~~~~~~~~~~~i~D~~~~~~~------~~~~~~g~~y~~iG~  467 (480)
                      ++.++++.+|.++++...+. .+++  ....+.....+..+|+|+..+.+.      +.+++.|+.|...+.
T Consensus        50 ~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~~~dapv  121 (162)
T d3cuma2          50 SARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPV  121 (162)
T ss_dssp             SHHHHHTSCSEEEECCSCHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCE
T ss_pred             hhhhhccccCeeeecccchhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCcEEeccc
Confidence            89999999999999988764 2221  112344555666799999999763      345577999987643

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=97.44  E-value=0.00016  Score=62.83  Aligned_cols=112  Identities=13%  Similarity=0.186  Sum_probs=68.5

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCC---CChHHHHHh---h--cCCCEE--EecCH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYE---PGLEDVVTQ---C--RGRNLF--FSTDI   72 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e---~~l~~l~~~---~--~~~~l~--~t~d~   72 (480)
                      ||.|||+|..|+.-+.....-  |.+|+++|+++++.+++.+-...+-+   .....+...   .  ......  ....+
T Consensus        31 ~VvViGaGvaG~~Aa~~A~~l--GA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l  108 (183)
T d1l7da1          31 RVLVFGVGVAGLQAIATAKRL--GAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAV  108 (183)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHH
T ss_pred             EEEEEcCcHHHHHHHHHHHHc--CCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHH
Confidence            799999999999766655555  89999999999998888863221111   111100000   0  000000  00123


Q ss_pred             HHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           73 EKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        73 ~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      .+.+.++|+||.++-.|-..       .|-+     +-+++.+.+++|.+||+.+-
T Consensus       109 ~~~l~~aDlVI~talipG~~-------aP~l-----it~~mv~~Mk~GSVIVDvai  152 (183)
T d1l7da1         109 LKELVKTDIAITTALIPGKP-------APVL-----ITEEMVTKMKPGSVIIDLAV  152 (183)
T ss_dssp             HHHHTTCSEEEECCCCTTSC-------CCCC-----SCHHHHTTSCTTCEEEETTG
T ss_pred             HHHHHhhhhheeeeecCCcc-------ccee-----ehHHHHHhcCCCcEEEEEee
Confidence            45578999999998766322       3322     34667788999999998764

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=97.41  E-value=0.00033  Score=59.68  Aligned_cols=97  Identities=16%  Similarity=0.282  Sum_probs=55.0

Q ss_pred             cEEEEEcCChhHHHH-HHHHHHcCCCCeEEE-EeCCHH--HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIGAGYVGGPT-MAVIALKCPKIEVAV-VDISVS--RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~l-A~~La~~~~G~~V~~-~D~~~~--~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      +||||||+|.+|.-+ ...|.. .+..+++. .+++++  ......+...+....++++++.           ++ + ..
T Consensus         5 irvaIIGaG~ig~~~~~~~l~~-~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~-----------~~-~-~~   70 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVLRN-AKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIK-----------LP-E-FA   70 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH-CSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHH-----------SG-G-GG
T ss_pred             cEEEEEcCcHHHHHHHHHHHhh-CCcceEEEEEecchhccchhhhhhcCCcccccceeeeee-----------cc-c-cc
Confidence            589999999999864 455543 35667665 577754  2222333333333333333321           11 1 35


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      +.|+||+|+|...+              ..  -......++.|..||+.|.
T Consensus        71 ~iDiVf~ATpag~h--------------~~--~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          71 DIDFVFDATSASAH--------------VQ--NEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             GEEEEEECSCHHHH--------------HH--HHHHHHHHCTTCEEEECST
T ss_pred             ccCEEEEcCCchhH--------------HH--hHHHHHHHHcCCEEEEccc
Confidence            78999999764221              11  1122334578999998875

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.35  E-value=0.00031  Score=60.76  Aligned_cols=110  Identities=15%  Similarity=0.017  Sum_probs=74.4

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      .+||+|+|...          .++.++..|.++|++|.+||..-...+.....+....+.       +............
T Consensus         1 sk~iaIiGaG~----------~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~   63 (184)
T d1bg6a2           1 SKTYAVLGLGN----------GGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEG-------PGLAGTAHPDLLT   63 (184)
T ss_dssp             CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEES-------SSCCEEECCSEEE
T ss_pred             CCEEEEECccH----------HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhh-------hhhhhhhhhhhhh
Confidence            36999999855          899999999999999999999644333222221000000       0111112333456


Q ss_pred             cCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011654          404 WDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       404 ~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~  451 (480)
                      .++.++++++|.++++++....++ -.+++...+.+..+|+...+...
T Consensus        64 ~~~~e~~~~aD~iii~v~~~~~~~-~~~~i~~~l~~~~~iv~~~g~~~  110 (184)
T d1bg6a2          64 SDIGLAVKDADVILIVVPAIHHAS-IAANIASYISEGQLIILNPGATG  110 (184)
T ss_dssp             SCHHHHHTTCSEEEECSCGGGHHH-HHHHHGGGCCTTCEEEESSCCSS
T ss_pred             hhhHhHhcCCCEEEEEEchhHHHH-HHHHhhhccCCCCEEEEeCCCCc
Confidence            789999999999999987776544 34567777777778888877654

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=97.33  E-value=0.00058  Score=59.86  Aligned_cols=104  Identities=10%  Similarity=0.126  Sum_probs=79.6

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.          +-+..+++.|..-|.+|.+|||...........                      +
T Consensus        40 ~~l~~~~vgiiG~G----------~IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~----------------------~   87 (188)
T d2naca1          40 YDLEAMHVGTVAAG----------RIGLAVLRRLAPFDVHLHYTDRHRLPESVEKEL----------------------N   87 (188)
T ss_dssp             CCCTTCEEEEECCS----------HHHHHHHHHHGGGTCEEEEECSSCCCHHHHHHH----------------------T
T ss_pred             eeccccceeecccc----------ccchhhhhhhhccCceEEEEeeccccccccccc----------------------c
Confidence            46789999999974          367899999999999999999987665544332                      2


Q ss_pred             eeeecCHHHhcccccEEEEEecccc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHHh
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDE-FKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKLR  456 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~-~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~  456 (480)
                      +....++++.++.+|+|+++.+-.+ -+. ++. +..+.|++.+++|.+.+  ++|.+.+.
T Consensus        88 ~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~-~~l~~mk~ga~lIN~aRG~ivd~~aL~  147 (188)
T d2naca1          88 LTWHATREDMYPVCDVVTLNCPLHPETEHMIND-ETLKLFKRGAYIVNTARGKLCDRDAVA  147 (188)
T ss_dssp             CEECSSHHHHGGGCSEEEECSCCCTTTTTCBSH-HHHTTSCTTEEEEECSCGGGBCHHHHH
T ss_pred             ccccCCHHHHHHhccchhhcccccccchhhhHH-HHHHhCCCCCEEEecCchhhhhHHHHH
Confidence            4566789999999999999888744 333 554 45578888889999866  77766543

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=97.31  E-value=0.00054  Score=60.69  Aligned_cols=111  Identities=23%  Similarity=0.262  Sum_probs=72.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~aD   80 (480)
                      .+|+|.|+|.||..+|..|.+.  |.+|+++|.++++++.....                   +.+.. +.++.+ .+||
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~--Gakvvv~d~d~~~~~~~~~~-------------------g~~~~-~~~~~~~~~~D   85 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEA--GAQLLVADTDTERVAHAVAL-------------------GHTAV-ALEDVLSTPCD   85 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT-------------------TCEEC-CGGGGGGCCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEecchHHHHHHHHhh-------------------ccccc-Cccccccccce
Confidence            4799999999999999999998  99999999999988776542                   11222 234444 3899


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcCCCCceeEeeCCcccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNSREIKYQILSNPEFLA  160 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~~  160 (480)
                      +++-|-- .-         ..+    .+.++.    ++ -. +|.+....|-+.+...++|.+.+      +.+.|.++.
T Consensus        86 I~iPcA~-~~---------~I~----~~~a~~----i~-ak-~i~e~AN~p~~~~~~~~~L~~rg------I~~iPD~la  139 (201)
T d1c1da1          86 VFAPCAM-GG---------VIT----TEVART----LD-CS-VVAGAANNVIADEAASDILHARG------ILYAPDFVA  139 (201)
T ss_dssp             EEEECSC-SC---------CBC----HHHHHH----CC-CS-EECCSCTTCBCSHHHHHHHHHTT------CEECCHHHH
T ss_pred             eeecccc-cc---------ccc----HHHHhh----hh-hh-eeeccCCCCcchhhHHHHhcccc------eEEEehhhh
Confidence            8887732 11         223    222333    33 24 44455555556566667777764      467887654

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=97.31  E-value=0.00089  Score=56.69  Aligned_cols=88  Identities=14%  Similarity=0.078  Sum_probs=65.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH-HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR-IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      +++.|+|-|.+|..+|..+...  |-+|+++++||-+ +++..+                    ++++ .+.+++++.+|
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~--Ga~V~V~E~DPi~alqA~md--------------------Gf~v-~~~~~a~~~aD   80 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGL--GARVYITEIDPICAIQAVME--------------------GFNV-VTLDEIVDKGD   80 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSCHHHHHHHHTT--------------------TCEE-CCHHHHTTTCS
T ss_pred             CEEEEecccccchhHHHHHHhC--CCEEEEEecCchhhHHHHhc--------------------CCcc-CchhHccccCc
Confidence            4799999999999999999988  8999999999953 222222                    3444 56788999999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv  129 (480)
                      ++|.+++...         -.+        .+-.+.++++.||.+..-.
T Consensus        81 i~vTaTGn~~---------vI~--------~~h~~~MKdgaIl~N~GHf  112 (163)
T d1v8ba1          81 FFITCTGNVD---------VIK--------LEHLLKMKNNAVVGNIGHF  112 (163)
T ss_dssp             EEEECCSSSS---------SBC--------HHHHTTCCTTCEEEECSST
T ss_pred             EEEEcCCCCc---------ccc--------HHHHHHhhCCeEEEecccc
Confidence            9999977531         112        2334568899988875544

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.27  E-value=0.00018  Score=63.76  Aligned_cols=96  Identities=13%  Similarity=0.104  Sum_probs=62.8

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcC----CCCeEEE-EeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKC----PKIEVAV-VDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~----~G~~V~~-~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a   75 (480)
                      |+||+|||.|.-|.+-|.+|.+.+    .|.+|++ ...+....+...+.....              .+. ..-+.+|+
T Consensus        44 ~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v--------------~~~-~v~~v~EA  108 (226)
T d1qmga2          44 IKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSE--------------ENG-TLGDMWET  108 (226)
T ss_dssp             CSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCG--------------GGT-CEEEHHHH
T ss_pred             CCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCcc--------------CCC-cccCHHHH
Confidence            468999999999999999999851    1455543 433322223222211100              001 12346788


Q ss_pred             hccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654           76 VAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK  126 (480)
Q Consensus        76 ~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~  126 (480)
                      ++.+|+|++.+|..               .-.++.++|.+++++|+.+...
T Consensus       109 v~~ADiVmiLlPDe---------------~Q~~vy~~I~p~Lk~G~~L~Fa  144 (226)
T d1qmga2         109 ISGSDLVLLLISDS---------------AQADNYEKVFSHMKPNSILGLS  144 (226)
T ss_dssp             HHTCSEEEECSCHH---------------HHHHHHHHHHHHSCTTCEEEES
T ss_pred             HhhCCEEEEecchH---------------HHHHHHHHHHHhcCCCceeeec
Confidence            99999999998742               2356678899999999988763

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.27  E-value=0.00049  Score=58.80  Aligned_cols=90  Identities=20%  Similarity=0.173  Sum_probs=66.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS-RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|+|||.|.-|.+-|.+|.+.  |.+|++=-+... ..+...+                   .+++. -+++|+++.+|
T Consensus        17 k~IaViGYGsQG~AhAlNLrDS--G~~V~VGLr~gs~s~~~A~~-------------------~Gf~v-~~~~eA~~~aD   74 (182)
T d1np3a2          17 KKVAIIGYGSQGHAHACNLKDS--GVDVTVGLRSGSATVAKAEA-------------------HGLKV-ADVKTAVAAAD   74 (182)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT--TCCEEEECCTTCHHHHHHHH-------------------TTCEE-ECHHHHHHTCS
T ss_pred             CEEEEEeeCcHhHHHHhhhhhc--CCCEEEEcCCCCccHHHHhh-------------------hcccc-ccHHHHhhhcC
Confidence            4799999999999999999998  999887554322 2222221                   23443 46788999999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHH-HHHHhhCCCCCEEEEecC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAA-RMIANVSNSNKIVVEKST  128 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~-~~i~~~l~~~~iVi~~ST  128 (480)
                      +|++-+|+.               .-.++. +.|.+++++++.+.....
T Consensus        75 iim~L~PD~---------------~q~~vy~~~I~p~lk~g~~L~FaHG  108 (182)
T d1np3a2          75 VVMILTPDE---------------FQGRLYKEEIEPNLKKGATLAFAHG  108 (182)
T ss_dssp             EEEECSCHH---------------HHHHHHHHHTGGGCCTTCEEEESCC
T ss_pred             eeeeecchH---------------HHHHHHHHhhhhhcCCCcEEEEecc
Confidence            999998742               124556 479999999999887543

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=97.24  E-value=0.00026  Score=62.76  Aligned_cols=100  Identities=14%  Similarity=0.162  Sum_probs=74.8

Q ss_pred             cCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          319 FNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       319 ~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +..+.+++|+|+|+.          .-+..+++.|..-|.+|.+|||+.....                         ..
T Consensus        40 ~~~l~~ktvgIiG~G----------~IG~~va~~l~~fg~~v~~~d~~~~~~~-------------------------~~   84 (199)
T d1dxya1          40 GKELGQQTVGVMGTG----------HIGQVAIKLFKGFGAKVIAYDPYPMKGD-------------------------HP   84 (199)
T ss_dssp             CCCGGGSEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSSCCSSC-------------------------CT
T ss_pred             cccccceeeeeeecc----------cccccccccccccceeeeccCCccchhh-------------------------hc
Confidence            456789999999984          3678999999999999999999865321                         11


Q ss_pred             ceeeecCHHHhcccccEEEEEecccc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDE-FKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~-~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      ... ..++++.++.+|.|+++++..+ -+. ++. +..+.|++.+++|.+.+  ++|.+.+
T Consensus        85 ~~~-~~~l~~l~~~~D~v~~~~plt~~T~~li~~-~~l~~mk~~a~lIN~aRG~vvde~aL  143 (199)
T d1dxya1          85 DFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINE-AAFNLMKPGAIVINTARPNLIDTQAM  143 (199)
T ss_dssp             TCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCH-HHHHHSCTTEEEEECSCTTSBCHHHH
T ss_pred             chh-HHHHHHHHHhcccceeeecccccccccccH-HHhhccCCceEEEecccHhhhhhHHH
Confidence            223 3478999999999999988744 333 454 45578998889999865  7776554

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.23  E-value=0.00059  Score=59.22  Aligned_cols=83  Identities=18%  Similarity=0.286  Sum_probs=53.5

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHHH-HHHHHCCCCCCC--CCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVV-DISVSR-IAAWNGDQLPIY--EPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~~-v~~l~~~~~~~~--e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      |.||+|.|.|++|..+++.+..+ ++.+|+++ |+++.. ...+.....+.+  +..... +   ...++....+..+..
T Consensus         1 MIKVaINGfGRIGR~v~Ral~~~-~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~i~v~g~~~~~~   75 (178)
T d1b7go1           1 MVNVAVNGYGTIGKRVADAIIKQ-PDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKK-F---EESGIPVAGTVEDLI   75 (178)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTC-TTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHH-H---HTTTCCCCCCHHHHH
T ss_pred             CeEEEEECCCHHHHHHHHHHHhC-CCCEEEEEECCCCcHHHHHhcccCcceeccCcccee-c---cccceecCCchhhhh
Confidence            67999999999999999999876 57888875 554432 222222222222  111111 1   223455566777777


Q ss_pred             ccCcEEEEeccC
Q 011654           77 AEADIVFVSVNT   88 (480)
Q Consensus        77 ~~aDvVii~Vpt   88 (480)
                      .++|+|+.|+|.
T Consensus        76 ~~vDiViecTG~   87 (178)
T d1b7go1          76 KTSDIVVDTTPN   87 (178)
T ss_dssp             HHCSEEEECCST
T ss_pred             hcCCEEEECCCC
Confidence            899999999774

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.19  E-value=0.001  Score=57.99  Aligned_cols=102  Identities=16%  Similarity=0.228  Sum_probs=77.4

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      ..+.+++|+|+|+.-          -+..+++.|..-|.+|.+|||+..++.... .                      .
T Consensus        40 ~~l~~k~vgiiG~G~----------IG~~va~~~~~fg~~v~~~d~~~~~~~~~~-~----------------------~   86 (184)
T d1ygya1          40 TEIFGKTVGVVGLGR----------IGQLVAQRIAAFGAYVVAYDPYVSPARAAQ-L----------------------G   86 (184)
T ss_dssp             CCCTTCEEEEECCSH----------HHHHHHHHHHTTTCEEEEECTTSCHHHHHH-H----------------------T
T ss_pred             ccccceeeeeccccc----------hhHHHHHHhhhccceEEeecCCCChhHHhh-c----------------------C
Confidence            457899999999854          678999999999999999999988754332 1                      1


Q ss_pred             eeeecCHHHhcccccEEEEEecc-ccccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHHh
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEW-DEFKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKLR  456 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h-~~~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~~  456 (480)
                      +. ..++++.++.+|+|+++.+. ++-+. ++ .+..+.|++.+++|.+.+  ++|.+.+.
T Consensus        87 ~~-~~~l~ell~~sDiv~~~~Plt~~T~~lin-~~~l~~mk~~a~lIN~sRG~iVde~aL~  145 (184)
T d1ygya1          87 IE-LLSLDDLLARADFISVHLPKTPETAGLID-KEALAKTKPGVIIVNAARGGLVDEAALA  145 (184)
T ss_dssp             CE-ECCHHHHHHHCSEEEECCCCSTTTTTCBC-HHHHTTSCTTEEEEECSCTTSBCHHHHH
T ss_pred             ce-eccHHHHHhhCCEEEEcCCCCchhhhhhh-HHHHhhhCCCceEEEecchhhhhhHHHH
Confidence            22 35789999999999999887 44444 45 455678998889999855  77765543

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=97.09  E-value=0.0011  Score=60.14  Aligned_cols=73  Identities=11%  Similarity=0.145  Sum_probs=48.6

Q ss_pred             cEEEEEcCChhHH----HHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            2 VKICCIGAGYVGG----PTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~G~----~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      +||||||+|.+|.    .....+.+..++++++ ++|+++++.+.+.+...               ....+..+++++.+
T Consensus        17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~---------------~~~~~~~~~~~~l~   81 (237)
T d2nvwa1          17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQ---------------LKHATGFDSLESFA   81 (237)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTT---------------CTTCEEESCHHHHH
T ss_pred             eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcc---------------cccceeecchhhcc
Confidence            6899999997553    3333454433467877 68999998877654210               01234567888876


Q ss_pred             c--cCcEEEEeccCC
Q 011654           77 A--EADIVFVSVNTP   89 (480)
Q Consensus        77 ~--~aDvVii~Vptp   89 (480)
                      +  +.|+|++|+|+.
T Consensus        82 ~~~~iD~V~i~tp~~   96 (237)
T d2nvwa1          82 QYKDIDMIVVSVKVP   96 (237)
T ss_dssp             HCTTCSEEEECSCHH
T ss_pred             cccccceeeccCCCc
Confidence            4  578999998754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.0019  Score=55.22  Aligned_cols=40  Identities=30%  Similarity=0.392  Sum_probs=35.0

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~   44 (480)
                      +|.|+|+|.+|+..++.+...  |. +|+++|+++++++..++
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~--G~~~Vi~~d~~~~rl~~a~~   69 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAM--GAAQVVVTDLSATRLSKAKE   69 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCSEEEEEESCHHHHHHHHH
T ss_pred             EEEEECCCccHHHHHHHHHHc--CCceEEeccCCHHHHHHHHH
Confidence            689999999999888777766  66 79999999999998775

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.07  E-value=0.0011  Score=63.08  Aligned_cols=97  Identities=10%  Similarity=0.051  Sum_probs=68.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+++|||+|..+...+..|....+-.+|.+|++++++.+.+.+.           + +.   ..+.+..+.++++.+||+
T Consensus       126 ~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~-----------~-~~---~~~~~~~~~~~a~~~aDi  190 (320)
T d1omoa_         126 SVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSY-----------C-ED---RGISASVQPAEEASRCDV  190 (320)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHH-----------H-HH---TTCCEEECCHHHHTSSSE
T ss_pred             cEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHH-----------H-Hh---cCCccccchhhhhccccE
Confidence            46999999999999999998765556899999999998877641           1 11   123344566777999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccc
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVK  132 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~g  132 (480)
                      |+.|+++..-        ..+           ...+++|..|...++..|+
T Consensus       191 V~taT~s~~P--------~~~-----------~~~l~~G~hv~~iGs~~p~  222 (320)
T d1omoa_         191 LVTTTPSRKP--------VVK-----------AEWVEEGTHINAIGADGPG  222 (320)
T ss_dssp             EEECCCCSSC--------CBC-----------GGGCCTTCEEEECSCCSTT
T ss_pred             EEEeccCccc--------ccc-----------hhhcCCCCeEeecCCcccc
Confidence            9999775321        111           2457889988765555444

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=97.02  E-value=0.0013  Score=56.73  Aligned_cols=117  Identities=12%  Similarity=0.136  Sum_probs=79.9

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      .++|+|+||..          +...+++.|.++|++|.+||..-...+.....   +..+.           ........
T Consensus         2 ~~nIg~IGlG~----------MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~---~~~~~-----------~~~~a~~~   57 (176)
T d2pgda2           2 QADIALIGLAV----------MGQNLILNMNDHGFVVCAFNRTVSKVDDFLAN---EAKGT-----------KVLGAHSL   57 (176)
T ss_dssp             CBSEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHT---TTTTS-----------SCEECSSH
T ss_pred             CCcEEEEeEhH----------HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHh---ccccc-----------cccchhhh
Confidence            46899999976          99999999999999999999765443222111   11110           01122234


Q ss_pred             cCHHHhcccccEEEEEecccc-cccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011654          404 WDAYQAAKDAHGVCILTEWDE-FKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSI  465 (480)
Q Consensus       404 ~~~~~a~~~ad~vvi~t~h~~-~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i  465 (480)
                      +++.+++..+|.+++...+.+ ..+. .+.+...+++..+|||+...-...      .+.+.|+.|..-
T Consensus        58 ~~~~~~~~~~~~ii~~~~~~~~v~~v-~~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~lda  125 (176)
T d2pgda2          58 EEMVSKLKKPRRIILLVKAGQAVDNF-IEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGS  125 (176)
T ss_dssp             HHHHHHBCSSCEEEECSCTTHHHHHH-HHHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred             hhhhhhhcccceEEEecCchHHHHHH-HHHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCceecc
Confidence            567788899999999888865 3332 456777778778999998877643      344668888654

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.00  E-value=0.00097  Score=63.76  Aligned_cols=103  Identities=11%  Similarity=0.021  Sum_probs=72.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+++|||+|..+...+..+....+=.+|.+||+++++.+++.+....  +++          -.+..++++++++++||+
T Consensus       129 ~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~--~~g----------~~v~~~~s~~eav~~ADI  196 (340)
T d1x7da_         129 RKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKE--YSG----------LTIRRASSVAEAVKGVDI  196 (340)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTT--CTT----------CEEEECSSHHHHHTTCSE
T ss_pred             ceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhh--ccC----------CCceecCCHHHHHhcCCc
Confidence            46999999999999998887754446899999999988877642100  011          236778999999999999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccch
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKT  133 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt  133 (480)
                      |++|+.++...        |=+   .      ...+++|..|...+...|+.
T Consensus       197 i~t~Tas~s~~--------Pv~---~------~~~l~pG~hI~aiGs~~p~~  231 (340)
T d1x7da_         197 ITTVTADKAYA--------TII---T------PDMLEPGMHLNAVGGDCPGK  231 (340)
T ss_dssp             EEECCCCSSEE--------EEE---C------GGGCCTTCEEEECSCCBTTB
T ss_pred             eeeccccCCCC--------ccc---c------hhhcCCCCEEeecccchhhh
Confidence            99998665321        100   0      24578888886555545543

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.99  E-value=0.0012  Score=57.70  Aligned_cols=98  Identities=14%  Similarity=0.146  Sum_probs=74.3

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+.+++|+|+|+..          -+..+++.|..-|.+|.+|||......                          ...
T Consensus        41 ~l~~~~vgiiG~G~----------IG~~va~~l~~fg~~v~~~d~~~~~~~--------------------------~~~   84 (188)
T d1sc6a1          41 EARGKKLGIIGYGH----------IGTQLGILAESLGMYVYFYDIENKLPL--------------------------GNA   84 (188)
T ss_dssp             CSTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSCCCCC--------------------------TTC
T ss_pred             cccceEEEEeeccc----------chhhhhhhcccccceEeeccccccchh--------------------------hhh
Confidence            57899999999866          778999999999999999999754321                          112


Q ss_pred             eeecCHHHhcccccEEEEEecccc-ccc-ccHHHHHHhcCCCCEEEEcCC--CCChHHH
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDE-FKT-LDYQKIFDNMRKPAYIFDGRN--ILDVEKL  455 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~-~~~-~~~~~~~~~~~~~~~i~D~~~--~~~~~~~  455 (480)
                      ....++++.++.+|+|+++.+..+ -+. ++. ++.+.|++.+++|.+.+  ++|.+.+
T Consensus        85 ~~~~~l~ell~~sDii~i~~plt~~T~~li~~-~~l~~mk~~a~lIN~aRG~lvde~aL  142 (188)
T d1sc6a1          85 TQVQHLSDLLNMSDVVSLHVPENPSTKNMMGA-KEISLMKPGSLLINASRGTVVDIPAL  142 (188)
T ss_dssp             EECSCHHHHHHHCSEEEECCCSSTTTTTCBCH-HHHHHSCTTEEEEECSCSSSBCHHHH
T ss_pred             hhhhhHHHHHhhccceeecccCCcchhhhccH-HHHhhCCCCCEEEEcCcHHhhhhHHH
Confidence            334689999999999999877633 333 454 55678888889999855  7786654

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.98  E-value=0.00046  Score=59.82  Aligned_cols=75  Identities=19%  Similarity=0.343  Sum_probs=45.8

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      ||||+|+| .|++|.-+...|+++ |.+++..+--+...-+.            +.+..............+.++...++
T Consensus         1 MikVaIvGATGyvG~eLirlL~~H-P~~ei~~l~s~~~aG~~------------i~~~~p~~~~~~~~~~~~~~~~~~~~   67 (176)
T d1vkna1           1 MIRAGIIGATGYTGLELVRLLKNH-PEAKITYLSSRTYAGKK------------LEEIFPSTLENSILSEFDPEKVSKNC   67 (176)
T ss_dssp             CEEEEEESTTSHHHHHHHHHHHHC-TTEEEEEEECSTTTTSB------------HHHHCGGGCCCCBCBCCCHHHHHHHC
T ss_pred             CeEEEEECCCcHHHHHHHHHHHhC-CCceEEEeeccccCCCc------------ccccCchhhccccccccCHhHhcccc
Confidence            89999999 599999999999886 67787776433221111            11111110011111124555556789


Q ss_pred             cEEEEeccC
Q 011654           80 DIVFVSVNT   88 (480)
Q Consensus        80 DvVii~Vpt   88 (480)
                      |++|.|+|.
T Consensus        68 dvvf~a~p~   76 (176)
T d1vkna1          68 DVLFTALPA   76 (176)
T ss_dssp             SEEEECCST
T ss_pred             ceEEEcccc
Confidence            999999874

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=96.97  E-value=0.0024  Score=49.32  Aligned_cols=68  Identities=19%  Similarity=0.286  Sum_probs=45.4

Q ss_pred             CcEEEEEcCChhH-HHHHHHHHHcCCCCeEEEEeCCHH-HHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            1 MVKICCIGAGYVG-GPTMAVIALKCPKIEVAVVDISVS-RIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         1 imkI~VIGlG~~G-~~lA~~La~~~~G~~V~~~D~~~~-~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      ++||=|||.|-.| +++|..|.++  |++|+|+|.... ..+.+.+...                 .+..-.+ .+-+.+
T Consensus         8 ~~~ihfiGigG~GMs~LA~~L~~~--G~~VsGSD~~~~~~~~~L~~~Gi-----------------~v~~g~~-~~~i~~   67 (96)
T d1p3da1           8 VQQIHFIGIGGAGMSGIAEILLNE--GYQISGSDIADGVVTQRLAQAGA-----------------KIYIGHA-EEHIEG   67 (96)
T ss_dssp             CCEEEEETTTSTTHHHHHHHHHHH--TCEEEEEESCCSHHHHHHHHTTC-----------------EEEESCC-GGGGTT
T ss_pred             CCEEEEEEECHHHHHHHHHHHHhC--CCEEEEEeCCCChhhhHHHHCCC-----------------eEEECCc-cccCCC
Confidence            3689999999999 5669999998  999999998632 3333333211                 1222223 334688


Q ss_pred             CcEEEEeccC
Q 011654           79 ADIVFVSVNT   88 (480)
Q Consensus        79 aDvVii~Vpt   88 (480)
                      +|+||++-.-
T Consensus        68 ~d~vV~S~AI   77 (96)
T d1p3da1          68 ASVVVVSSAI   77 (96)
T ss_dssp             CSEEEECTTS
T ss_pred             CCEEEECCCc
Confidence            9998887443

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.86  E-value=0.0011  Score=57.58  Aligned_cols=31  Identities=19%  Similarity=0.574  Sum_probs=27.0

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEE
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVV   32 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~   32 (480)
                      ||||+||| .||+|.-+...|..+ |.+++..+
T Consensus         1 MikVaIiGATGyvG~eLlrlL~~H-P~~ei~~l   32 (179)
T d2g17a1           1 MLNTLIVGASGYAGAELVSYVNRH-PHMTITAL   32 (179)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHC-TTEEEEEE
T ss_pred             CcEEEEECcccHHHHHHHHHHHhC-CCCceEee
Confidence            89999999 699999999999986 67777654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.78  E-value=0.00091  Score=53.80  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=29.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      .||.|||.|++|.-+|..|++.  |.+|+++++.
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~--g~~Vtlv~~~   54 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRL--GIDSYIFARG   54 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTT--TCEEEEECSS
T ss_pred             CEEEEECCchHHHHHHHHHHhc--cccceeeehh
Confidence            5899999999999999999987  9999999984

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.76  E-value=0.0014  Score=54.95  Aligned_cols=91  Identities=13%  Similarity=0.032  Sum_probs=67.2

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      ||+|+|+.-          ....+++.|.++|++|.+||..-.........                      +....++
T Consensus         2 kIgiIG~G~----------mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~----------------------~~~~~~~   49 (152)
T d1i36a2           2 RVGFIGFGE----------VAQTLASRLRSRGVEVVTSLEGRSPSTIERAR----------------------TVGVTET   49 (152)
T ss_dssp             EEEEESCSH----------HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH----------------------HHTCEEC
T ss_pred             EEEEEcHHH----------HHHHHHHHHHHCCCeEEEEcCchhHHHHHhhh----------------------ccccccc
Confidence            799999865          89999999999999999999876654433221                      2345678


Q ss_pred             HHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011654          406 AYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       406 ~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~  451 (480)
                      +.++++++|+|++++..++..+. ...+....  ...++|+..+-.
T Consensus        50 ~~e~~~~~diIi~~v~~~~~~~~-~~~~~~~~--~~~~id~st~~p   92 (152)
T d1i36a2          50 SEEDVYSCPVVISAVTPGVALGA-ARRAGRHV--RGIYVDINNISP   92 (152)
T ss_dssp             CHHHHHTSSEEEECSCGGGHHHH-HHHHHTTC--CSEEEECSCCCH
T ss_pred             HHHHHhhcCeEEEEecCchHHHH-HHhhcccC--CceeeccCcCCH
Confidence            89999999999999998765432 22333332  348999988764

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=96.76  E-value=0.006  Score=51.55  Aligned_cols=122  Identities=13%  Similarity=0.108  Sum_probs=79.2

Q ss_pred             HHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC-EEEEECCCCCh-HHHHHhhhccccCCCCCCCC
Q 011654          312 NRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA-KLSIYDPQVTE-DQIQRDLSMKKFDWDHPIHL  389 (480)
Q Consensus       312 ~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~-~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~  389 (480)
                      +...+.+ ..+++++|+|+|..          ..+..+++.|..+|+ ++.++..-... +.+...++.           
T Consensus        13 ~la~~~~-~~l~~~~ilviGaG----------~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~-----------   70 (159)
T d1gpja2          13 ELAEREL-GSLHDKTVLVVGAG----------EMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGG-----------   70 (159)
T ss_dssp             HHHHHHH-SCCTTCEEEEESCC----------HHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTC-----------
T ss_pred             HHHHHHh-CCcccCeEEEECCC----------HHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhc-----------
Confidence            3333333 46899999999963          378899999999998 69999986433 233333321           


Q ss_pred             CCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhc-----CCCCEEEEcC--CCCChHHHhhcCcEE
Q 011654          390 QPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNM-----RKPAYIFDGR--NILDVEKLREIGFIV  462 (480)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~-----~~~~~i~D~~--~~~~~~~~~~~g~~y  462 (480)
                               ...-.+++.+++.++|+||.+|.-+++- ++...+...+     ++|.+|||..  +-+++.--.-.|+.+
T Consensus        71 ---------~~~~~~~~~~~l~~~Divi~atss~~~i-i~~~~i~~~~~~r~~~~~~~iiDlavPr~vd~~v~~~~~v~l  140 (159)
T d1gpja2          71 ---------EAVRFDELVDHLARSDVVVSATAAPHPV-IHVDDVREALRKRDRRSPILIIDIANPRDVEEGVENIEDVEV  140 (159)
T ss_dssp             ---------EECCGGGHHHHHHTCSEEEECCSSSSCC-BCHHHHHHHHHHCSSCCCEEEEECCSSCSBCTTGGGSTTEEE
T ss_pred             ---------ccccchhHHHHhccCCEEEEecCCCCcc-ccHhhhHHHHHhcccCCCeEEEeecCCCCcChhhhccCCeEE
Confidence                     1122357788999999999999877654 4555555444     2466999973  123344333346666


Q ss_pred             EEe
Q 011654          463 YSI  465 (480)
Q Consensus       463 ~~i  465 (480)
                      +.|
T Consensus       141 ~~l  143 (159)
T d1gpja2         141 RTI  143 (159)
T ss_dssp             EEH
T ss_pred             EeH
Confidence            554

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.70  E-value=0.00041  Score=58.11  Aligned_cols=70  Identities=14%  Similarity=0.223  Sum_probs=43.2

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGA-GYVGGPTMAVIALK-CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||||||+ ||+|.-+...|.++ .|..++..+..+..      .|+ ++...          ...+.......+...++
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~------~Gk-~i~~~----------~~~~~~~~~~~~~~~~~   65 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAES------AGQ-RMGFA----------ESSLRVGDVDSFDFSSV   65 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTT------TTC-EEEET----------TEEEECEEGGGCCGGGC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeeccc------CCc-ceeec----------cccchhccchhhhhccc
Confidence            89999996 99999999999864 36667877654332      121 11000          01122222222346789


Q ss_pred             cEEEEeccC
Q 011654           80 DIVFVSVNT   88 (480)
Q Consensus        80 DvVii~Vpt   88 (480)
                      |++|.|+|.
T Consensus        66 d~vf~a~p~   74 (144)
T d2hjsa1          66 GLAFFAAAA   74 (144)
T ss_dssp             SEEEECSCH
T ss_pred             eEEEecCCc
Confidence            999999873

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=96.69  E-value=0.019  Score=48.36  Aligned_cols=40  Identities=20%  Similarity=0.165  Sum_probs=35.2

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      +|.|+|+|.+|+..++.+...  |.+|+++|+++++.+.+++
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~--Ga~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAY--GAFVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             EEEEEcccccchhhHhhHhhh--cccccccchHHHHHHHHHH
Confidence            689999999999988777666  8999999999999988775

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.66  E-value=0.0033  Score=47.74  Aligned_cols=66  Identities=20%  Similarity=0.223  Sum_probs=46.4

Q ss_pred             cEEEEEcCChhHH-HHHHHHHHcCCCCeEEEEeCCH-HHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGG-PTMAVIALKCPKIEVAVVDISV-SRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~-~lA~~La~~~~G~~V~~~D~~~-~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||=|||.|-+|. ++|..|.++  |+.|.|.|+.+ +..+.|.+...+++                 .-.+.+ -+.++
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~--G~~VsGSD~~~~~~t~~L~~~Gi~i~-----------------~gh~~~-~i~~~   61 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSN--GNDVYGSNIEETERTAYLRKLGIPIF-----------------VPHSAD-NWYDP   61 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEECSSCCHHHHHHHHTTCCEE-----------------SSCCTT-SCCCC
T ss_pred             cEEEEEeECHHHHHHHHHHHHhC--CCeEEEEeCCCChhHHHHHHCCCeEE-----------------eeeccc-ccCCC
Confidence            8999999999998 778888888  99999999986 34555654332221                 111222 25789


Q ss_pred             cEEEEecc
Q 011654           80 DIVFVSVN   87 (480)
Q Consensus        80 DvVii~Vp   87 (480)
                      |+||.+-.
T Consensus        62 d~vV~SsA   69 (89)
T d1j6ua1          62 DLVIKTPA   69 (89)
T ss_dssp             SEEEECTT
T ss_pred             CEEEEecC
Confidence            98877743

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.48  E-value=0.0052  Score=51.47  Aligned_cols=95  Identities=17%  Similarity=0.200  Sum_probs=71.1

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHH-HHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQ-IQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      ||+|+|..          ..+..|++.|.+.|.+|.+||+..+... +...+                      ++....
T Consensus         2 kIg~IG~G----------~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~----------------------g~~~~~   49 (152)
T d2ahra2           2 KIGIIGVG----------KMASAIIKGLKQTPHELIISGSSLERSKEIAEQL----------------------ALPYAM   49 (152)
T ss_dssp             EEEEECCS----------HHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHH----------------------TCCBCS
T ss_pred             EEEEEecc----------HHHHHHHHHHHhCCCeEEEEcChHHhHHhhcccc----------------------ceeeec
Confidence            78999974          4888999999999999999998644322 22222                      245667


Q ss_pred             CHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhh
Q 011654          405 DAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLRE  457 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~  457 (480)
                      +..++++++|+|++++....+.     ++.+.+++..+|++.-.-+..+++++
T Consensus        50 ~~~~~~~~~dvIilavkp~~~~-----~vl~~l~~~~~iis~~agi~~~~l~~   97 (152)
T d2ahra2          50 SHQDLIDQVDLVILGIKPQLFE-----TVLKPLHFKQPIISMAAGISLQRLAT   97 (152)
T ss_dssp             SHHHHHHTCSEEEECSCGGGHH-----HHHTTSCCCSCEEECCTTCCHHHHHH
T ss_pred             hhhhhhhccceeeeecchHhHH-----HHhhhcccceeEecccccccHHHHHh
Confidence            8999999999999999765543     44555566668999988888777664

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.46  E-value=0.0006  Score=58.67  Aligned_cols=68  Identities=12%  Similarity=0.246  Sum_probs=39.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc--cC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA--EA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~--~a   79 (480)
                      +||+|||+|.||...+..|.+......+.++|.+..+      . ...             ..... ..++++.+.  +.
T Consensus         8 ~kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~------~-~~~-------------~~~~~-~~~~~e~l~~~~i   66 (172)
T d1lc0a1           8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR------E-LGS-------------LDEVR-QISLEDALRSQEI   66 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS------C-CCE-------------ETTEE-BCCHHHHHHCSSE
T ss_pred             cEEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH------H-HHH-------------hhccC-cCCHHHHHhCCCc
Confidence            5899999999999988887643101234444432110      0 000             01222 346777664  66


Q ss_pred             cEEEEeccCCC
Q 011654           80 DIVFVSVNTPT   90 (480)
Q Consensus        80 DvVii~Vptp~   90 (480)
                      |+|+||+|+..
T Consensus        67 D~V~I~tp~~~   77 (172)
T d1lc0a1          67 DVAYICSESSS   77 (172)
T ss_dssp             EEEEECSCGGG
T ss_pred             chhhhcccccc
Confidence            89999987643

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.45  E-value=0.0013  Score=59.18  Aligned_cols=32  Identities=19%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      +||.|||+|..|++.|..|+++  |++|+++|++
T Consensus         7 ~kVvVIGaGiaGl~~A~~L~~~--G~~V~vier~   38 (268)
T d1c0pa1           7 KRVVVLGSGVIGLSSALILARK--GYSVHILARD   38 (268)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred             CcEEEECccHHHHHHHHHHHHC--CCCEEEEeCC
Confidence            4899999999999999999998  9999999985

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.39  E-value=0.0064  Score=48.12  Aligned_cols=33  Identities=12%  Similarity=0.166  Sum_probs=29.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .+|.|||.|.+|..-|..|.+.  |.+|++++...
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~--ga~v~v~~~~~   45 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEA--GARLTVNALTF   45 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TBEEEEEESSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCeEEEEeccC
Confidence            4799999999999999999998  89999998654

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=96.39  E-value=0.0049  Score=51.35  Aligned_cols=71  Identities=21%  Similarity=0.238  Sum_probs=42.1

Q ss_pred             CcEEEEEcC-ChhHHHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHCCCCCCC-CCChHHHHHhhcCCCEEEecCHHHHh
Q 011654            1 MVKICCIGA-GYVGGPTMAVIALK--CPKIEVAVVDISVSRIAAWNGDQLPIY-EPGLEDVVTQCRGRNLFFSTDIEKHV   76 (480)
Q Consensus         1 imkI~VIGl-G~~G~~lA~~La~~--~~G~~V~~~D~~~~~v~~l~~~~~~~~-e~~l~~l~~~~~~~~l~~t~d~~~a~   76 (480)
                      |.||||||+ |++|.-+-..|.++  .|-.+++.+..+...      +..+.. ..          .....-..+.. .+
T Consensus         1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~------g~~~~~~~~----------~~~~~~~~~~~-~~   63 (146)
T d1t4ba1           1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLG------QAAPSFGGT----------TGTLQDAFDLE-AL   63 (146)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTT------SBCCGGGTC----------CCBCEETTCHH-HH
T ss_pred             CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccc------cccccccCC----------ceeeecccchh-hh
Confidence            789999996 99999999876654  133466666654321      111100 00          01111223333 47


Q ss_pred             ccCcEEEEeccC
Q 011654           77 AEADIVFVSVNT   88 (480)
Q Consensus        77 ~~aDvVii~Vpt   88 (480)
                      +++|++|.|+|.
T Consensus        64 ~~~DivF~a~~~   75 (146)
T d1t4ba1          64 KALDIIVTCQGG   75 (146)
T ss_dssp             HTCSEEEECSCH
T ss_pred             hcCcEEEEecCc
Confidence            899999999874

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.38  E-value=0.0054  Score=52.52  Aligned_cols=83  Identities=20%  Similarity=0.251  Sum_probs=50.3

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEE-eCCHH-H-HHHHHCCCCCCC--CCChHHHHHhhcCCCEEEecCHHHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVV-DISVS-R-IAAWNGDQLPIY--EPGLEDVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~-D~~~~-~-v~~l~~~~~~~~--e~~l~~l~~~~~~~~l~~t~d~~~a   75 (480)
                      |.||||-|.|.+|..+...+..+ +..+|+.+ |+++. . ...+..+ .+.+  .++.......   .++....+..++
T Consensus         1 M~~VgINGfGRIGR~v~R~l~~~-~di~vvaInd~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~---~~~~v~g~~~~~   75 (171)
T d1cf2o1           1 MKAVAINGYGTVGKRVADAIAQQ-DDMKVIGVSKTRPDFEARMALKKG-YDLYVAIPERVKLFEK---AGIEVAGTVDDM   75 (171)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTS-SSEEEEEEEESSCSHHHHHHHHTT-CCEEESSGGGHHHHHH---TTCCCCEEHHHH
T ss_pred             CeEEEEEcCcHHHHHHHHHHHhC-CCceEEEEecCCcHHHHHHHHhcC-CceEecccccceeecc---cCcccCCChhHh
Confidence            78999999999999999988765 35777654 55532 2 2223332 2221  1111111111   234444456666


Q ss_pred             hccCcEEEEeccC
Q 011654           76 VAEADIVFVSVNT   88 (480)
Q Consensus        76 ~~~aDvVii~Vpt   88 (480)
                      .+++|+|+.|+|.
T Consensus        76 ~~~vDvViEcTG~   88 (171)
T d1cf2o1          76 LDEADIVIDCTPE   88 (171)
T ss_dssp             HHTCSEEEECCST
T ss_pred             hcCCCEEEEccCC
Confidence            7899999999764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=96.29  E-value=0.0011  Score=60.52  Aligned_cols=32  Identities=13%  Similarity=0.322  Sum_probs=30.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      |||+|||.|.-|++.|..|+++  |++|++++.+
T Consensus         1 m~V~IIGaG~aGL~aA~~L~~~--G~~V~vlE~~   32 (347)
T d2ivda1           1 MNVAVVGGGISGLAVAHHLRSR--GTDAVLLESS   32 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHTT--TCCEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhC--CCCEEEEecC
Confidence            8999999999999999999998  9999999975

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=96.28  E-value=0.0044  Score=52.91  Aligned_cols=72  Identities=17%  Similarity=0.105  Sum_probs=52.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|.|+|+|-.+.+++..|.+.  |.+|++++|+.++.+.+.+....              ...+...+..+....++|+
T Consensus        19 k~vlIlGaGGaarai~~al~~~--g~~i~I~nRt~~ka~~l~~~~~~--------------~~~~~~~~~~~~~~~~~dl   82 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSL--DCAVTITNRTVSRAEELAKLFAH--------------TGSIQALSMDELEGHEFDL   82 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSHHHHHHHHHHTGG--------------GSSEEECCSGGGTTCCCSE
T ss_pred             CEEEEECCcHHHHHHHHHhccc--ceEEEeccchHHHHHHHHHHHhh--------------cccccccccccccccccce
Confidence            4799999999999999999998  78999999999998887642100              1233333332222467999


Q ss_pred             EEEeccCC
Q 011654           82 VFVSVNTP   89 (480)
Q Consensus        82 Vii~Vptp   89 (480)
                      ||=|+|..
T Consensus        83 iIN~Tp~G   90 (170)
T d1nyta1          83 IINATSSG   90 (170)
T ss_dssp             EEECCSCG
T ss_pred             eecccccC
Confidence            99997654

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.28  E-value=0.033  Score=46.86  Aligned_cols=104  Identities=14%  Similarity=0.181  Sum_probs=74.6

Q ss_pred             HHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCC
Q 011654          311 VNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQ  390 (480)
Q Consensus       311 ~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~  390 (480)
                      ++-+++..+..+.+++|+|+|...          -...+++.|...|++|.+||+... ..++..+              
T Consensus        11 ~~~~~r~t~~~l~Gk~v~V~GyG~----------iG~g~A~~~rg~G~~V~v~e~dp~-~al~A~~--------------   65 (163)
T d1li4a1          11 IDGIKRATDVMIAGKVAVVAGYGD----------VGKGCAQALRGFGARVIITEIDPI-NALQAAM--------------   65 (163)
T ss_dssp             HHHHHHHHCCCCTTCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHH-HHHHHHH--------------
T ss_pred             HHHHHHHhCceecCCEEEEecccc----------ccHHHHHHHHhCCCeeEeeecccc-hhHHhhc--------------
Confidence            344555556678999999999765          678899999999999999999642 2333322              


Q ss_pred             CCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011654          391 PMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       391 ~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~  451 (480)
                             .++. ..++++++..+|.+|..|..+..  ++.+.+ +.|+..+++.. -+.|+
T Consensus        66 -------dG~~-v~~~~~a~~~adivvtaTGn~~v--I~~eh~-~~MKdgaIL~N-~Ghfd  114 (163)
T d1li4a1          66 -------EGYE-VTTMDEACQEGNIFVTTTGCIDI--ILGRHF-EQMKDDAIVCN-IGHFD  114 (163)
T ss_dssp             -------TTCE-ECCHHHHTTTCSEEEECSSCSCS--BCHHHH-TTCCTTEEEEE-CSSST
T ss_pred             -------CceE-eeehhhhhhhccEEEecCCCccc--hhHHHH-HhccCCeEEEE-ecccc
Confidence                   2233 34789999999999999997542  666665 67888855544 44444

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.24  E-value=0.0025  Score=54.82  Aligned_cols=40  Identities=23%  Similarity=0.146  Sum_probs=33.3

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~   44 (480)
                      +|.|+|+|.+|+..++.+...  |. +|+++|+++++.+..++
T Consensus        30 ~VlI~GaG~vGl~~~q~ak~~--Ga~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          30 SVVVIGIGAVGLMGIAGAKLR--GAGRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             CEEEECCSHHHHHHHHHHHTT--TCSCEEEECCCHHHHHHHHH
T ss_pred             EEEEEcCCcchhhhhhhhhcc--cccccccccchhhhHHHHHh
Confidence            689999999999877666655  65 79999999999887765

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.21  E-value=0.0082  Score=51.58  Aligned_cols=40  Identities=20%  Similarity=0.152  Sum_probs=34.1

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~   44 (480)
                      +|.|+|+|.+|...++.+...  |. +|+++|+++++.+.+++
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~--Ga~~Vi~~~~~~~~~~~a~~   71 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSL--GAENVIVIAGSPNRLKLAEE   71 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TBSEEEEEESCHHHHHHHHH
T ss_pred             EEEEECCCccchhheeccccc--cccccccccccccccccccc
Confidence            689999999999777766665  76 79999999999988775

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.16  E-value=0.0092  Score=50.52  Aligned_cols=97  Identities=15%  Similarity=0.089  Sum_probs=66.9

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCC--EEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKA--KLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~--~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      ++|+|+|+..          ..-.+++.|.+.|.  +|.+||+.....+.....+.                   -. ..
T Consensus         2 k~I~IIG~G~----------mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~-------------------~~-~~   51 (171)
T d2g5ca2           2 QNVLIVGVGF----------MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGI-------------------ID-EG   51 (171)
T ss_dssp             CEEEEESCSH----------HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTS-------------------CS-EE
T ss_pred             CEEEEEccCH----------HHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhc-------------------ch-hh
Confidence            3799999865          78889999999985  79999997554433332210                   01 12


Q ss_pred             ecCHH-HhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011654          403 VWDAY-QAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDV  452 (480)
Q Consensus       403 ~~~~~-~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~  452 (480)
                      .++.. ....++|+|+++|+-..+.+ -..++.....+..+|+|..++-.+
T Consensus        52 ~~~~~~~~~~~~dlIila~p~~~~~~-vl~~l~~~~~~~~ii~d~~s~k~~  101 (171)
T d2g5ca2          52 TTSIAKVEDFSPDFVMLSSPVRTFRE-IAKKLSYILSEDATVTDQGSVKGK  101 (171)
T ss_dssp             ESCGGGGGGTCCSEEEECSCHHHHHH-HHHHHHHHSCTTCEEEECCSCCTH
T ss_pred             hhhhhhhhccccccccccCCchhhhh-hhhhhhccccccccccccccccHH
Confidence            22333 34458999999998777655 235677777777899999997654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.12  E-value=0.0017  Score=58.80  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=31.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      +||+|||+|..|+.+|..|+++  |++|+++|++++
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~--G~~v~v~Er~~~   38 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDA--GVDVDVYERSPQ   38 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence            6999999999999999999998  999999998643

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=96.10  E-value=0.0027  Score=54.03  Aligned_cols=72  Identities=8%  Similarity=0.183  Sum_probs=43.6

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEE-EEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVA-VVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~-~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      |||+|+|+ |.||..++..+.+. ++.+++ ++|+....          ....++.++... ..-.+.++.++++....+
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~-~~~~lv~~~~~~~~~----------~~g~d~~~~~~~-~~~~~~~~~~~~~~~~~~   72 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALAL-EGVQLGAALEREGSS----------LLGSDAGELAGA-GKTGVTVQSSLDAVKDDF   72 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHS-TTEECCCEECCTTCT----------TCSCCTTCSSSS-SCCSCCEESCSTTTTTSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEecccch----------hccchhhhhhcc-ccCCceeeccHHHHhccc
Confidence            79999995 99999999988775 366765 45543211          000011111000 012356778888878899


Q ss_pred             cEEEEe
Q 011654           80 DIVFVS   85 (480)
Q Consensus        80 DvVii~   85 (480)
                      |+||=-
T Consensus        73 DViIDF   78 (162)
T d1diha1          73 DVFIDF   78 (162)
T ss_dssp             SEEEEC
T ss_pred             ceEEEe
Confidence            988755

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=96.09  E-value=0.007  Score=50.74  Aligned_cols=107  Identities=13%  Similarity=0.064  Sum_probs=73.8

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      ||+++|+..          +...+++.|.+.|..|.++|..-.........+                        ...+
T Consensus         2 kIg~IGlG~----------MG~~ma~~L~~~g~~~~~~~~~~~~~~~~~~~~------------------------~~~~   47 (156)
T d2cvza2           2 KVAFIGLGA----------MGYPMAGHLARRFPTLVWNRTFEKALRHQEEFG------------------------SEAV   47 (156)
T ss_dssp             CEEEECCST----------THHHHHHHHHTTSCEEEECSSTHHHHHHHHHHC------------------------CEEC
T ss_pred             eEEEEeHHH----------HHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHcC------------------------Cccc
Confidence            799999965          999999999999999887776544433333221                        1123


Q ss_pred             HHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEec
Q 011654          406 AYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIG  466 (480)
Q Consensus       406 ~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG  466 (480)
                      ..+.+.++|.+++....++--..-...+...+.+..+++|+...-+..      .+++.|+.|..-.
T Consensus        48 ~~~~~~~~~~~i~~~~~~~~v~~~~~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldap  114 (156)
T d2cvza2          48 PLERVAEARVIFTCLPTTREVYEVAEALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAP  114 (156)
T ss_dssp             CGGGGGGCSEEEECCSSHHHHHHHHHHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECC
T ss_pred             ccccccceeEEEecccchhhhhhhhccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEecc
Confidence            345667889998887776522223467777888888999998876532      3445688887653

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.07  E-value=0.0075  Score=49.00  Aligned_cols=30  Identities=30%  Similarity=0.401  Sum_probs=25.4

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEE-Ee
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAV-VD   33 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~-~D   33 (480)
                      |||+|+|+ |.||..++..+.+.  ++++.+ +|
T Consensus         1 mki~i~G~~GrMG~~i~~~~~~~--~~~l~~~id   32 (128)
T d1vm6a3           1 MKYGIVGYSGRMGQEIQKVFSEK--GHELVLKVD   32 (128)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHhcC--CCeEEEEEC
Confidence            89999996 99999999988777  888764 44

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.02  E-value=0.011  Score=49.22  Aligned_cols=82  Identities=15%  Similarity=0.054  Sum_probs=64.3

Q ss_pred             CCCEEEEEe-eccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCcee
Q 011654          323 SGKKIAILG-FAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVN  401 (480)
Q Consensus       323 ~~~~v~ilG-la~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (480)
                      .-+||+|+| +.-          ....+++.|.++|++|.+||.....                                
T Consensus         8 ~~~kI~iIGg~G~----------mG~~la~~L~~~G~~V~~~d~~~~~--------------------------------   45 (152)
T d2pv7a2           8 DIHKIVIVGGYGK----------LGGLFARYLRASGYPISILDREDWA--------------------------------   45 (152)
T ss_dssp             TCCCEEEETTTSH----------HHHHHHHHHHTTTCCEEEECTTCGG--------------------------------
T ss_pred             CCCeEEEEcCCCH----------HHHHHHHHHHHcCCCcEeccccccc--------------------------------
Confidence            457999999 865          8899999999999999999985432                                


Q ss_pred             eecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCC
Q 011654          402 VVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNIL  450 (480)
Q Consensus       402 ~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~  450 (480)
                         ..++.++++|.+++.+.=....+ -..++...+++..+|+|...+=
T Consensus        46 ---~~~~~~~~~~~v~~~~~~~~~~~-v~~~~~~~~~~~~iiiD~~Svk   90 (152)
T d2pv7a2          46 ---VAESILANADVVIVSVPINLTLE-TIERLKPYLTENMLLADLTSVK   90 (152)
T ss_dssp             ---GHHHHHTTCSEEEECSCGGGHHH-HHHHHGGGCCTTSEEEECCSCC
T ss_pred             ---ccchhhhhccccccccchhhhee-eeecccccccCCceEEEecccC
Confidence               23456789999999988776554 3456677777778999998764

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=96.00  E-value=0.014  Score=49.28  Aligned_cols=70  Identities=24%  Similarity=0.380  Sum_probs=53.2

Q ss_pred             cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|+|||-+. +|.|+|..|.++  |..|+.++..                                 |.++.+.++++|
T Consensus        38 K~v~VIGrS~~VG~Pla~lL~~~--gatVt~~h~~---------------------------------t~~l~~~~~~AD   82 (166)
T d1b0aa1          38 LNAVVIGASNIVGRPMSMELLLA--GCTTTVTHRF---------------------------------TKNLRHHVENAD   82 (166)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTT--TCEEEEECSS---------------------------------CSCHHHHHHHCS
T ss_pred             ceEEEEeccccccHHHHHHHHHh--hccccccccc---------------------------------cchhHHHHhhhh
Confidence            4799999766 999999999988  8999988742                                 234455578999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK  126 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~  126 (480)
                      +||.+++-|-..         +           ...++++.+||+.
T Consensus        83 ivI~a~G~p~~i---------~-----------~~~vk~g~vvIDv  108 (166)
T d1b0aa1          83 LLIVAVGKPGFI---------P-----------GDWIKEGAIVIDV  108 (166)
T ss_dssp             EEEECSCCTTCB---------C-----------TTTSCTTCEEEEC
T ss_pred             HhhhhccCcccc---------c-----------ccccCCCcEEEec
Confidence            999999865321         1           2356889999864

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=95.99  E-value=0.0032  Score=54.03  Aligned_cols=72  Identities=10%  Similarity=0.063  Sum_probs=52.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .+|.|+|+|.++.+++..|.+.  +.+|++++|+.++.+.+.+.-            ..  ...+.........+.++|+
T Consensus        19 k~vlIlGaGGaarai~~aL~~~--~~~i~I~nR~~~~a~~l~~~~------------~~--~~~~~~~~~~~~~~~~~di   82 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQA--QQNIVLANRTFSKTKELAERF------------QP--YGNIQAVSMDSIPLQTYDL   82 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHT--TCEEEEEESSHHHHHHHHHHH------------GG--GSCEEEEEGGGCCCSCCSE
T ss_pred             CEEEEECCcHHHHHHHHHHccc--CceeeeccchHHHHHHHHHHH------------hh--ccccchhhhccccccccce
Confidence            4799999999999999999886  789999999999988876421            00  1223333322223578999


Q ss_pred             EEEeccCC
Q 011654           82 VFVSVNTP   89 (480)
Q Consensus        82 Vii~Vptp   89 (480)
                      ||=|+|..
T Consensus        83 iIN~tp~g   90 (171)
T d1p77a1          83 VINATSAG   90 (171)
T ss_dssp             EEECCCC-
T ss_pred             eeeccccc
Confidence            99997754

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.89  E-value=0.0061  Score=52.22  Aligned_cols=85  Identities=13%  Similarity=0.149  Sum_probs=49.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHH-HHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISVSR-IAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEA   79 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~-v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~a   79 (480)
                      +||+|.|.|.+|..++..+..+ +..+|+. .|+++.. ...+..-..+.+...-+..... ...++....+..+...++
T Consensus         3 irIaINGfGRIGR~v~Ral~~~-~dieiVaINd~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v   80 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQ-DDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRF-EKEGFEVAGTLNDLLEKV   80 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTC-TTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHH-HHHTCCCSCBHHHHHTTC
T ss_pred             EEEEEECCCHHHHHHHHHHHhC-CCceEEEEecCCChHHHHHhhhcCceeecccccceeee-cccCccccchhhhhhccC
Confidence            6999999999999999988765 4677665 4665533 2333322222221111111110 011233344566767899


Q ss_pred             cEEEEeccC
Q 011654           80 DIVFVSVNT   88 (480)
Q Consensus        80 DvVii~Vpt   88 (480)
                      |+|+.|+|.
T Consensus        81 DvViEcTG~   89 (172)
T d2czca2          81 DIIVDATPG   89 (172)
T ss_dssp             SEEEECCST
T ss_pred             CEEEECCCC
Confidence            999999764

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.87  E-value=0.0048  Score=52.58  Aligned_cols=66  Identities=14%  Similarity=0.133  Sum_probs=49.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .+|.|||+|-++.+++..|.+.  |. ++++++|++++.+.+.+..                  +.....+..  ..++|
T Consensus        18 ~~vlIlGaGGaarai~~aL~~~--g~~~I~I~nR~~~ka~~L~~~~------------------~~~~~~~~~--~~~~D   75 (167)
T d1npya1          18 AKVIVHGSGGMAKAVVAAFKNS--GFEKLKIYARNVKTGQYLAALY------------------GYAYINSLE--NQQAD   75 (167)
T ss_dssp             SCEEEECSSTTHHHHHHHHHHT--TCCCEEEECSCHHHHHHHHHHH------------------TCEEESCCT--TCCCS
T ss_pred             CeEEEECCCHHHHHHHHHHHHC--CCCEEEEecccHHHHHHHHHhh------------------hhhhhhccc--ccchh
Confidence            4799999999999999999988  75 7999999999988876420                  112222222  36799


Q ss_pred             EEEEeccCC
Q 011654           81 IVFVSVNTP   89 (480)
Q Consensus        81 vVii~Vptp   89 (480)
                      +||=|+|-.
T Consensus        76 liINaTpiG   84 (167)
T d1npya1          76 ILVNVTSIG   84 (167)
T ss_dssp             EEEECSSTT
T ss_pred             hheeccccC
Confidence            999997743

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.023  Score=48.21  Aligned_cols=72  Identities=17%  Similarity=0.335  Sum_probs=54.6

Q ss_pred             cEEEEEcCCh-hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            2 VKICCIGAGY-VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         2 mkI~VIGlG~-~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ++|+|||-+. +|.|+|..|+++  |..|+.++..                                 |.++.+..+++|
T Consensus        40 k~vvVIGrS~iVGrPLa~lL~~~--gatVt~~~~~---------------------------------t~~l~~~~~~aD   84 (170)
T d1a4ia1          40 RHAVVVGRSKIVGAPMHDLLLWN--NATVTTCHSK---------------------------------TAHLDEEVNKGD   84 (170)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHT--TCEEEEECTT---------------------------------CSSHHHHHTTCS
T ss_pred             ceEEEEecCCccchHHHHHHHhc--cCceEEEecc---------------------------------cccHHHHHhhcc
Confidence            4799999855 999999999998  8999998862                                 233445578999


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      +++.+++.|--.         +           ...++++.+||+..+
T Consensus        85 ivi~a~G~~~~i---------~-----------~~~vk~g~iviDvgi  112 (170)
T d1a4ia1          85 ILVVATGQPEMV---------K-----------GEWIKPGAIVIDCGI  112 (170)
T ss_dssp             EEEECCCCTTCB---------C-----------GGGSCTTCEEEECCC
T ss_pred             chhhcccccccc---------c-----------cccccCCCeEeccCc
Confidence            999999876321         1           245789999987543

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.80  E-value=0.00075  Score=60.37  Aligned_cols=27  Identities=30%  Similarity=0.414  Sum_probs=24.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVA   30 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~   30 (480)
                      |||+|||+|.+|+++|..|+++  |++|+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~--G~~v~   27 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHER--YHSVL   27 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--HTTTS
T ss_pred             CEEEEECchHHHHHHHHHHHHC--CCCce
Confidence            8999999999999999999998  77544

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=95.79  E-value=0.0092  Score=49.65  Aligned_cols=71  Identities=21%  Similarity=0.262  Sum_probs=41.0

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHc--CCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            2 VKICCIG-AGYVGGPTMAVIALK--CPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~--~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      ||||||| .||+|.-+...|.++  .|..++..+..+..      .|..+.....         ........+. +..++
T Consensus         1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~------~gk~~~~~~~---------~~~~~~~~~~-~~~~~   64 (147)
T d1mb4a1           1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQI------GVPAPNFGKD---------AGMLHDAFDI-ESLKQ   64 (147)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCC------SSBCCCSSSC---------CCBCEETTCH-HHHTT
T ss_pred             CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccc------cccccccCCc---------ceeeecccch-hhhcc
Confidence            8999999 599999999877653  13345555544321      1222211100         0111222343 34789


Q ss_pred             CcEEEEeccC
Q 011654           79 ADIVFVSVNT   88 (480)
Q Consensus        79 aDvVii~Vpt   88 (480)
                      +|++|.|+|.
T Consensus        65 ~DvvF~alp~   74 (147)
T d1mb4a1          65 LDAVITCQGG   74 (147)
T ss_dssp             CSEEEECSCH
T ss_pred             ccEEEEecCc
Confidence            9999999874

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.74  E-value=0.0047  Score=49.19  Aligned_cols=34  Identities=21%  Similarity=0.269  Sum_probs=31.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      .+|.|||.|++|.-+|..|++.  |.+|+++++.+.
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~--G~~Vtlve~~~~   56 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANF--GTKVTILEGAGE   56 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred             CeEEEECCCccceeeeeeeccc--ccEEEEEEecce
Confidence            5899999999999999999998  999999998653

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.74  E-value=0.004  Score=53.66  Aligned_cols=34  Identities=18%  Similarity=0.234  Sum_probs=30.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~   37 (480)
                      .||+|||.|..|+..|..|+++  |+ +|+++++++.
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~--G~~~V~v~E~~~~   39 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARL--GYSDITIFEKQEY   39 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSS
T ss_pred             CEEEEECChHHHHHHHHHHHHC--CCCeEEEEEecCc
Confidence            5899999999999999999998  88 5999998754

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.69  E-value=0.0025  Score=55.36  Aligned_cols=32  Identities=28%  Similarity=0.672  Sum_probs=27.2

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      +||+||| .||+|.-+.+.|+++ |.+++..+.-
T Consensus         6 ikVaIlGATGyvG~elirLL~~H-P~~ei~~l~S   38 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANH-PQFRIKVMTA   38 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTC-SSEEEEEEEC
T ss_pred             cEEEEECcccHHHHHHHHHHHhC-CCceEEEEec
Confidence            5899999 599999999999987 7788777653

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.68  E-value=0.0097  Score=46.98  Aligned_cols=76  Identities=13%  Similarity=0.001  Sum_probs=55.4

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      ++++++|+|+|.+-          -+..-++.|.+.|++|.+++|...++..... .                   ..++
T Consensus         9 ~l~~k~vlVvG~G~----------va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~-~-------------------~~~i   58 (113)
T d1pjqa1           9 QLRDRDCLIVGGGD----------VAERKARLLLEAGARLTVNALTFIPQFTVWA-N-------------------EGML   58 (113)
T ss_dssp             CCBTCEEEEECCSH----------HHHHHHHHHHHTTBEEEEEESSCCHHHHHHH-T-------------------TTSC
T ss_pred             EeCCCEEEEECCCH----------HHHHHHHHHHHCCCeEEEEeccCChHHHHHH-h-------------------cCCc
Confidence            57899999999754          6789999999999999999999987644221 1                   0112


Q ss_pred             eee--cCHHHhcccccEEEEEecccccc
Q 011654          401 NVV--WDAYQAAKDAHGVCILTEWDEFK  426 (480)
Q Consensus       401 ~~~--~~~~~a~~~ad~vvi~t~h~~~~  426 (480)
                      ++.  .-.++.+.+++++++.|+.++..
T Consensus        59 ~~~~~~~~~~dl~~~~lv~~at~d~~~n   86 (113)
T d1pjqa1          59 TLVEGPFDETLLDSCWLAIAATDDDTVN   86 (113)
T ss_dssp             EEEESSCCGGGGTTCSEEEECCSCHHHH
T ss_pred             eeeccCCCHHHhCCCcEEeecCCCHHHH
Confidence            221  11234588999999999998854

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=95.66  E-value=0.015  Score=49.54  Aligned_cols=40  Identities=25%  Similarity=0.252  Sum_probs=33.5

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~   44 (480)
                      +|.|+|+|.+|+..++.+...  |. .|++.|.++++.+..++
T Consensus        31 ~VlI~G~G~iG~~~~~~ak~~--g~~~v~~~~~~~~k~~~a~~   71 (174)
T d1f8fa2          31 SFVTWGAGAVGLSALLAAKVC--GASIIIAVDIVESRLELAKQ   71 (174)
T ss_dssp             EEEEESCSHHHHHHHHHHHHH--TCSEEEEEESCHHHHHHHHH
T ss_pred             EEEEeCCCHHHhhhhhccccc--ccceeeeeccHHHHHHHHHH
Confidence            699999999999988877666  54 56788999999888775

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=95.66  E-value=0.0038  Score=53.98  Aligned_cols=34  Identities=21%  Similarity=0.247  Sum_probs=31.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      .||+|||.|..|+..|..|+++  ||+|++||.+++
T Consensus        44 k~V~IIGaGPAGL~AA~~la~~--G~~Vtl~E~~~~   77 (179)
T d1ps9a3          44 KNLAVVGAGPAGLAFAINAAAR--GHQVTLFDAHSE   77 (179)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSSS
T ss_pred             cEEEEECccHHHHHHHHHHHhh--ccceEEEeccCc
Confidence            5899999999999999999998  999999998764

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.60  E-value=0.0033  Score=57.95  Aligned_cols=33  Identities=18%  Similarity=0.254  Sum_probs=31.1

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      +|.|||+|..|+.+|..|+++  |++|+++|++++
T Consensus         4 ~V~IvGaGp~Gl~~A~~L~~~--G~~v~vlE~~~~   36 (292)
T d1k0ia1           4 QVAIIGAGPSGLLLGQLLHKA--GIDNVILERQTP   36 (292)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH--TCCEEEECSSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCCEEEEeCCCC
Confidence            699999999999999999999  999999999864

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=95.51  E-value=0.0046  Score=56.35  Aligned_cols=31  Identities=19%  Similarity=0.340  Sum_probs=29.3

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      |.|||.|.+|+++|..|+++  |++|+++|+++
T Consensus         7 vvIIGaGi~Gls~A~~La~~--G~~V~vlE~~~   37 (276)
T d1ryia1           7 AVVIGGGIIGSAIAYYLAKE--NKNTALFESGT   37 (276)
T ss_dssp             EEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            99999999999999999998  99999999853

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.49  E-value=0.0057  Score=57.83  Aligned_cols=37  Identities=27%  Similarity=0.210  Sum_probs=31.7

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      |+||+|||+|.-|+.+|..|++.+.+++|++++++.+
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~   40 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGS   40 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence            5789999999999999999987633579999999753

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.49  E-value=0.0059  Score=49.12  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=30.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .++.|||.|++|+-+|..|++.  |.+|+++++.+
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~l--G~~Vtii~~~~   56 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRL--GSKVTVVEFQP   56 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhh--CcceeEEEecc
Confidence            4899999999999999999998  99999999854

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.49  E-value=0.0071  Score=52.50  Aligned_cols=35  Identities=14%  Similarity=0.173  Sum_probs=31.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      |||.|||.|+.|..+|..|++.+++.+|+++++++
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~   35 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD   35 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence            89999999999999999999876678999999764

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.054  Score=45.84  Aligned_cols=79  Identities=11%  Similarity=0.111  Sum_probs=60.9

Q ss_pred             hcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          318 MFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       318 l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      .+-++++++|.|+|=|-         --..+|+..|.++|+.|.+.+-...                             
T Consensus        33 ~~i~l~Gk~vvVIGrS~---------iVGrPLa~lL~~~gatVt~~~~~t~-----------------------------   74 (170)
T d1a4ia1          33 TGVPIAGRHAVVVGRSK---------IVGAPMHDLLLWNNATVTTCHSKTA-----------------------------   74 (170)
T ss_dssp             TTCCCTTCEEEEECCCT---------TTHHHHHHHHHHTTCEEEEECTTCS-----------------------------
T ss_pred             hCcccccceEEEEecCC---------ccchHHHHHHHhccCceEEEecccc-----------------------------
Confidence            44568999999999543         3578899999999999999886543                             


Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                             ++.+-+++||++|.++..+.+-.-+      ..++..+|||.-
T Consensus        75 -------~l~~~~~~aDivi~a~G~~~~i~~~------~vk~g~iviDvg  111 (170)
T d1a4ia1          75 -------HLDEEVNKGDILVVATGQPEMVKGE------WIKPGAIVIDCG  111 (170)
T ss_dssp             -------SHHHHHTTCSEEEECCCCTTCBCGG------GSCTTCEEEECC
T ss_pred             -------cHHHHHhhccchhhccccccccccc------cccCCCeEeccC
Confidence                   3345578999999999999975433      235567999985

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=95.44  E-value=0.0046  Score=56.14  Aligned_cols=32  Identities=22%  Similarity=0.403  Sum_probs=30.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      +||+|||.|.-|+..|..|+++  |++|+++|.+
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~--G~~V~vlE~~   33 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIH--GLNVTVFEAE   33 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--SCEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCCEEEEeCC
Confidence            6899999999999999999998  9999999975

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.37  E-value=0.0056  Score=54.40  Aligned_cols=36  Identities=19%  Similarity=0.332  Sum_probs=31.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      .||+|||.|.-|+..|..|+++..|++|++||..+.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            489999999999999999987655899999998753

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=95.36  E-value=0.0057  Score=56.56  Aligned_cols=33  Identities=27%  Similarity=0.339  Sum_probs=30.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .||+|||.|..|++.|..|+++  |++|+++|.++
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~--G~~V~vlE~~~   63 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGA--GHQVTVLEASE   63 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHC--CCCEEEEeCCC
Confidence            4899999999999999999999  99999999753

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=95.36  E-value=0.057  Score=45.76  Aligned_cols=117  Identities=10%  Similarity=0.159  Sum_probs=75.9

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeee--
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVV--  403 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  403 (480)
                      ||+|+|+..          ....+++.|.++|++|.+||+..+..+...+.+     +..         .........  
T Consensus         3 kIGvIGlG~----------MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~-----~~~---------~~~~~~~~~~~   58 (178)
T d1pgja2           3 DVGVVGLGV----------MGANLALNIAEKGFKVAVFNRTYSKSEEFMKAN-----ASA---------PFAGNLKAFET   58 (178)
T ss_dssp             SEEEECCSH----------HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHT-----TTS---------TTGGGEEECSC
T ss_pred             EEEEEeehH----------HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC-----Ccc---------ccccchhhhhh
Confidence            699999965          889999999999999999998655433222111     000         001122222  


Q ss_pred             -cCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEec
Q 011654          404 -WDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSIG  466 (480)
Q Consensus       404 -~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~iG  466 (480)
                       ++....+..++.+.+.........-....+...+.+..+++|........      ++.+.++.|..-.
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldap  128 (178)
T d1pgja2          59 MEAFAASLKKPRKALILVQAGAATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMG  128 (178)
T ss_dssp             HHHHHHHBCSSCEEEECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEE
T ss_pred             hhHHHHhcccceEEEEeecCcchhhhhhhhhhhhccccceecccCccchhHHHHHHHHHhhcceeEeccc
Confidence             23444566788888887776654444556677777777999998876542      3346788887653

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.36  E-value=0.0065  Score=53.41  Aligned_cols=73  Identities=10%  Similarity=0.059  Sum_probs=49.8

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCe--EEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIE--VAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~--V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      |++|.|.| .|.+|..++..|.++  |++  |+...|++++.+.+..+...+ .            +.+.-..+..++++
T Consensus         3 ~~tVlVtGatG~iG~~l~~~Ll~~--g~~v~v~~~~R~~~~~~~~~~~~~~~-~------------~d~~~~~~~~~~~~   67 (252)
T d2q46a1           3 LPTVLVTGASGRTGQIVYKKLKEG--SDKFVAKGLVRSAQGKEKIGGEADVF-I------------GDITDADSINPAFQ   67 (252)
T ss_dssp             CCEEEEESTTSTTHHHHHHHHHHT--TTTCEEEEEESCHHHHHHTTCCTTEE-E------------CCTTSHHHHHHHHT
T ss_pred             CCEEEEECCccHHHHHHHHHHHHC--CCcEEEEEEcCCHHHHHhccCCcEEE-E------------eeeccccccccccc
Confidence            67999999 699999999999998  765  566778888877665432111 1            01101123445678


Q ss_pred             cCcEEEEeccC
Q 011654           78 EADIVFVSVNT   88 (480)
Q Consensus        78 ~aDvVii~Vpt   88 (480)
                      ++|.|+.+...
T Consensus        68 ~~d~vi~~a~~   78 (252)
T d2q46a1          68 GIDALVILTSA   78 (252)
T ss_dssp             TCSEEEECCCC
T ss_pred             cceeeEEEEee
Confidence            89999988643

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=95.34  E-value=0.0071  Score=48.09  Aligned_cols=33  Identities=21%  Similarity=0.335  Sum_probs=30.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .||.|||.|++|.-+|..|++.  |++|+++++.+
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~--G~~Vtlve~~~   54 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGL--GAKTHLFEMFD   54 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred             CEEEEECCChhhHHHHHHhhcc--ccEEEEEeecc
Confidence            4899999999999999999998  99999999864

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.34  E-value=0.0058  Score=55.33  Aligned_cols=33  Identities=21%  Similarity=0.218  Sum_probs=30.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~   36 (480)
                      |+|+|||.|..|+.+|..|+++  | ++|+++++++
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~--Gi~~V~V~Er~~   35 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQA--GIGKVTLLESSS   35 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCSEEEEEESSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhC--CCCeEEEEeCCC
Confidence            7999999999999999999998  8 5999999865

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=95.33  E-value=0.008  Score=48.26  Aligned_cols=34  Identities=18%  Similarity=0.316  Sum_probs=31.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      .+|.|||.|++|.-+|..|++.  |.+|+++++.+.
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~--g~~Vtli~~~~~   64 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTA--GVHVSLVETQPR   64 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred             CeEEEECcchhHHHHHHHhhcc--cceEEEEeeccc
Confidence            4799999999999999999998  999999998653

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=95.33  E-value=0.016  Score=43.96  Aligned_cols=75  Identities=12%  Similarity=0.123  Sum_probs=50.8

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      +++++||+|+|+.=          ..+.+++.|.+.|++|.++|.....+... .+.                  ....+
T Consensus         2 ~~~~K~v~ViGlG~----------sG~s~a~~L~~~g~~v~~~D~~~~~~~~~-~~~------------------~~~~~   52 (93)
T d2jfga1           2 DYQGKNVVIIGLGL----------TGLSCVDFFLARGVTPRVMDTRMTPPGLD-KLP------------------EAVER   52 (93)
T ss_dssp             CCTTCCEEEECCSH----------HHHHHHHHHHHTTCCCEEEESSSSCTTGG-GSC------------------TTSCE
T ss_pred             CcCCCEEEEEeECH----------HHHHHHHHHHHCCCEEEEeeCCcCchhHH-HHh------------------hccce
Confidence            46899999999854          57889999999999999999876543221 110                  00112


Q ss_pred             eeecCHHHhcccccEEEEEecccc
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDE  424 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~  424 (480)
                      .+.....+.+.++|.+|+-...+.
T Consensus        53 ~~~~~~~~~~~~~d~vi~SPGi~~   76 (93)
T d2jfga1          53 HTGSLNDEWLMAADLIVASPGIAL   76 (93)
T ss_dssp             EESBCCHHHHHHCSEEEECTTSCT
T ss_pred             eecccchhhhccCCEEEECCCCCC
Confidence            222223556788999998766653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.32  E-value=0.023  Score=49.58  Aligned_cols=86  Identities=14%  Similarity=0.011  Sum_probs=54.6

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCC-CCCCCCCceeeec
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQP-MSPPASKQVNVVW  404 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~  404 (480)
                      ||+|+|+.|          -.+.++-.|.++|.+|.+||..-..-   ..+........+|..... ........+...+
T Consensus         2 kI~ViGlG~----------vGl~~a~~la~~g~~V~g~D~n~~~i---~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~   68 (202)
T d1mv8a2           2 RISIFGLGY----------VGAVCAGCLSARGHEVIGVDVSSTKI---DLINQGKSPIVEPGLEALLQQGRQTGRLSGTT   68 (202)
T ss_dssp             EEEEECCST----------THHHHHHHHHHTTCEEEEECSCHHHH---HHHHTTCCSSCCTTHHHHHHHHHHTTCEEEES
T ss_pred             EEEEECCCH----------hHHHHHHHHHhCCCcEEEEeCCHHHH---HHhcccCCcccchhhhhhhhhhhcccccccCC
Confidence            799999999          77999999999999999999753221   111110110011100000 0000123456788


Q ss_pred             CHHHhcccccEEEEEecccc
Q 011654          405 DAYQAAKDAHGVCILTEWDE  424 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~  424 (480)
                      +..++++++|+++|+++-|.
T Consensus        69 ~~~~~i~~~d~i~i~VpTP~   88 (202)
T d1mv8a2          69 DFKKAVLDSDVSFICVGTPS   88 (202)
T ss_dssp             CHHHHHHTCSEEEECCCCCB
T ss_pred             CHHHHHhhCCEEEEecCccc
Confidence            99999999999999988754

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.31  E-value=0.0068  Score=57.05  Aligned_cols=33  Identities=30%  Similarity=0.378  Sum_probs=30.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      +||+|||+|.-|++.|..|+++  |++|++++.+.
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~--G~~V~viEk~~   35 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEK--GHQVHIIDQRD   35 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCEEEEEESSS
T ss_pred             CEEEEECCcHHHHHHHHHHHhC--CCCEEEEECCC
Confidence            6999999999999999999998  99999999753

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=95.24  E-value=0.012  Score=52.63  Aligned_cols=111  Identities=14%  Similarity=0.132  Sum_probs=71.0

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh-ccCc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV-AEAD   80 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~-~~aD   80 (480)
                      ++|+|-|.|.||..+|..|.+.  |..|++.|.++..++.+....                 + .... +.++.+ .+||
T Consensus        40 ~~v~IqG~GnVG~~~a~~L~~~--Gakvv~~d~~~~~~~~~~~~~-----------------g-~~~~-~~~~~~~~~cD   98 (230)
T d1leha1          40 LAVSVQGLGNVAKALCKKLNTE--GAKLVVTDVNKAAVSAAVAEE-----------------G-ADAV-APNAIYGVTCD   98 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHHH-----------------C-CEEC-CGGGTTTCCCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEeecccHHHHHHHHHhc-----------------C-Cccc-CCccccccccc
Confidence            4799999999999999999998  999999999999887765420                 1 1222 233333 4899


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC-CccchHHHHHHHHHhcCCCCceeEeeCCccc
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST-VPVKTAEAIEKILTHNSREIKYQILSNPEFL  159 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST-v~~gt~~~l~~~l~~~~~g~~~~v~~~Pe~~  159 (480)
                      +++-|--..          ..+.    +.+..    ++ -.+| .+.. .++.+. +..++|.+.+      +++.|.++
T Consensus        99 Il~PcA~~~----------~I~~----~~~~~----l~-ak~I-ve~ANn~~t~~-ea~~~L~~rG------I~~iPD~l  151 (230)
T d1leha1          99 IFAPCALGA----------VLND----FTIPQ----LK-AKVI-AGSADNQLKDP-RHGKYLHELG------IVYAPDYV  151 (230)
T ss_dssp             EEEECSCSC----------CBST----THHHH----CC-CSEE-CCSCSCCBSSH-HHHHHHHHHT------CEECCHHH
T ss_pred             Eeccccccc----------ccCh----HHhhc----cC-ccEE-EecccCCCCCc-hHHHHHHhhC------cEEEeehh
Confidence            999884321          1221    11222    33 2444 4554 666543 4456676664      56788765


Q ss_pred             c
Q 011654          160 A  160 (480)
Q Consensus       160 ~  160 (480)
                      .
T Consensus       152 a  152 (230)
T d1leha1         152 I  152 (230)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.19  E-value=0.0077  Score=48.31  Aligned_cols=33  Identities=18%  Similarity=0.262  Sum_probs=30.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .+|.|||.|++|.-+|..|++.  |++|+++++++
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~--g~~Vtlv~~~~   65 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEA--GYHVKLIHRGA   65 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred             CcEEEECCcHHHHHHHHHhhcc--cceEEEEeccc
Confidence            4799999999999999999998  99999999864

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.18  E-value=0.0099  Score=47.75  Aligned_cols=33  Identities=30%  Similarity=0.462  Sum_probs=30.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .+|.|||.|++|.-+|..|++.  |++|+++++.+
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~--g~~Vtlie~~~   63 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKA--GKKVTVIDILD   63 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSS
T ss_pred             CEEEEECChHHHHHHHHHhhcc--ceEEEEEEecC
Confidence            4899999999999999999998  99999999864

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=95.15  E-value=0.013  Score=50.82  Aligned_cols=85  Identities=9%  Similarity=0.110  Sum_probs=59.6

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      +||+|+|..          +-+..++..|.+.|.+|.+|+..-  +.. ..+...+.   +|. .+| .....+++....
T Consensus         8 ~KI~ViGaG----------~wGtAlA~~La~~g~~V~l~~r~~--~~~-~~i~~~~~---n~~-yl~-~~~l~~~i~~t~   69 (189)
T d1n1ea2           8 NKAVVFGSG----------AFGTALAMVLSKKCREVCVWHMNE--EEV-RLVNEKRE---NVL-FLK-GVQLASNITFTS   69 (189)
T ss_dssp             EEEEEECCS----------HHHHHHHHHHHTTEEEEEEECSCH--HHH-HHHHHHTB---CTT-TST-TCBCCTTEEEES
T ss_pred             ceEEEECCC----------HHHHHHHHHHHHcCCeEEEEEecH--HHH-HHHhhccc---ccc-ccc-ccccccccccch
Confidence            589999975          488999999999999999999742  222 22211110   110 000 112346788899


Q ss_pred             CHHHhcccccEEEEEeccccccc
Q 011654          405 DAYQAAKDAHGVCILTEWDEFKT  427 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~~~~  427 (480)
                      +++++++++|.|+++++...+++
T Consensus        70 ~l~~a~~~ad~iiiavPs~~~~~   92 (189)
T d1n1ea2          70 DVEKAYNGAEIILFVIPTQFLRG   92 (189)
T ss_dssp             CHHHHHTTCSCEEECSCHHHHHH
T ss_pred             hhhhccCCCCEEEEcCcHHHHHH
Confidence            99999999999999999987765

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.071  Score=44.85  Aligned_cols=80  Identities=11%  Similarity=0.046  Sum_probs=60.5

Q ss_pred             HhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCC
Q 011654          317 SMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPA  396 (480)
Q Consensus       317 ~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  396 (480)
                      ..+-.+.+++|.|+|-|-         .-..+++..|.++|+.|.+.+-...                            
T Consensus        30 ~y~i~l~GK~v~VIGrS~---------~VG~Pla~lL~~~gatVt~~h~~t~----------------------------   72 (166)
T d1b0aa1          30 RYNIDTFGLNAVVIGASN---------IVGRPMSMELLLAGCTTTVTHRFTK----------------------------   72 (166)
T ss_dssp             HTTCCCTTCEEEEECCCT---------TTHHHHHHHHHTTTCEEEEECSSCS----------------------------
T ss_pred             HcCcccccceEEEEeccc---------cccHHHHHHHHHhhccccccccccc----------------------------
Confidence            345578999999999643         4678899999999999998765432                            


Q ss_pred             CCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          397 SKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       397 ~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                              ++.+.++.||++|.++..+.+-.-+      ..++..+|||.-
T Consensus        73 --------~l~~~~~~ADivI~a~G~p~~i~~~------~vk~g~vvIDvG  109 (166)
T d1b0aa1          73 --------NLRHHVENADLLIVAVGKPGFIPGD------WIKEGAIVIDVG  109 (166)
T ss_dssp             --------CHHHHHHHCSEEEECSCCTTCBCTT------TSCTTCEEEECC
T ss_pred             --------hhHHHHhhhhHhhhhccCccccccc------ccCCCcEEEecC
Confidence                    3455679999999999999875433      234567999963

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.038  Score=45.69  Aligned_cols=34  Identities=12%  Similarity=0.098  Sum_probs=31.3

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSR   38 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~   38 (480)
                      .|-|+|.|.+|..++..|.+.  |++|+++|.++++
T Consensus         5 HiII~G~g~~g~~l~~~L~~~--~~~v~vId~d~~~   38 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQR--GQNVTVISNLPED   38 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHT--TCCEEEEECCCHH
T ss_pred             EEEEECCCHHHHHHHHHHHHc--CCCEEEEeccchh
Confidence            488999999999999999998  9999999999864

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.06  E-value=0.0098  Score=47.75  Aligned_cols=32  Identities=28%  Similarity=0.267  Sum_probs=29.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      .+++|||.|++|+-+|..|++.  |.+|+++.++
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~l--G~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGI--GLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhc--CCeEEEEEec
Confidence            4799999999999999999998  9999999875

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.99  E-value=0.033  Score=46.62  Aligned_cols=40  Identities=18%  Similarity=0.216  Sum_probs=34.4

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      +|.|+|+|.+|+..+..+...  |.+|++.+.++++.+.+++
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~--g~~v~~~~~~~~r~~~~k~   69 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAM--GLNVVAVDIGDEKLELAKE   69 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred             EEEEeecccchhhhhHHHhcC--CCeEeccCCCHHHhhhhhh
Confidence            789999999999766666655  8899999999999988876

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.011  Score=47.63  Aligned_cols=33  Identities=12%  Similarity=0.196  Sum_probs=30.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .+|.|||.|++|+-+|..|++.  |.+|+++++.+
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~--G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSAL--GSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcC--CcEEEEEeecc
Confidence            4799999999999999999998  99999999853

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=94.90  E-value=0.0084  Score=52.80  Aligned_cols=33  Identities=15%  Similarity=0.332  Sum_probs=29.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~   36 (480)
                      .||+|||+|.-|++.|..|+++  |+ +|++++.++
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~--G~~~V~vlE~~~   34 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEA--GITDLLILEATD   34 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHT--TCCCEEEECSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhC--CCCcEEEEECCC
Confidence            3799999999999999999998  85 799999753

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=94.87  E-value=0.016  Score=46.18  Aligned_cols=33  Identities=33%  Similarity=0.289  Sum_probs=30.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .+|.|||.|++|+-+|..|++.  |.+|+++.+.+
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~--G~~Vtiv~~~~   55 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARL--GAEVTVLEAMD   55 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSS
T ss_pred             CeEEEECCChHHHHHHHHHHHc--CCceEEEEeec
Confidence            4899999999999999999998  99999999753

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.85  E-value=0.035  Score=47.15  Aligned_cols=40  Identities=13%  Similarity=0.043  Sum_probs=35.1

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~   44 (480)
                      +|.|+|+|-+|+..++.+...  | .+|++.|+++++++..++
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~--G~~~Vi~~d~~~~kl~~a~~   70 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAA--GASRIIGVGTHKDKFPKAIE   70 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred             EEEEECCCchhHHHHHHHHHc--CCceeeccCChHHHHHHHHH
Confidence            689999999999988888776  5 589999999999988776

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=94.83  E-value=0.028  Score=47.52  Aligned_cols=42  Identities=12%  Similarity=0.230  Sum_probs=34.7

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD   45 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~   45 (480)
                      +|.|+|+|.+|+..++.+...+ +..|++.|+++++.+.+++.
T Consensus        35 ~vli~GaG~vG~~~~~~a~~~g-~~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2          35 YVAIVGVGGLGHIAVQLLKVMT-PATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHC-CCEEEEEESSHHHHHHHHHT
T ss_pred             EEEEeCCChHHHHHHHHHHhhc-CcccccccchhHHHHHHhhc
Confidence            5899999999998887776652 46889999999999988763

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.81  E-value=0.021  Score=48.99  Aligned_cols=108  Identities=12%  Similarity=0.194  Sum_probs=72.1

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      +|+|+|..          +.+..++..|.+.|.+|.+|....+++.. ......+   .+|  ..+ .......+...++
T Consensus         2 kI~ViGaG----------~~GtalA~~la~~g~~V~l~~r~~~~~~~-~~i~~~~---~~~--~~~-~~~~~~~i~~~~~   64 (180)
T d1txga2           2 IVSILGAG----------AMGSALSVPLVDNGNEVRIWGTEFDTEIL-KSISAGR---EHP--RLG-VKLNGVEIFWPEQ   64 (180)
T ss_dssp             EEEEESCC----------HHHHHHHHHHHHHCCEEEEECCGGGHHHH-HHHHTTC---CBT--TTT-BCCCSEEEECGGG
T ss_pred             EEEEECCC----------HHHHHHHHHHHHCCCEEEEEEecccHHHH-HHHhhhh---hhh--hhc-chhcccccccccc
Confidence            79999974          48899999999999999999654333222 2221100   011  110 0111234566789


Q ss_pred             HHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011654          406 AYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       406 ~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~  451 (480)
                      .+++++++|+|+++++...+++ -.+++....++..+|+-++++.+
T Consensus        65 ~~~~~~~ad~Ii~avps~~~~~-~~~~l~~~l~~~~ii~~tkg~~~  109 (180)
T d1txga2          65 LEKCLENAEVVLLGVSTDGVLP-VMSRILPYLKDQYIVLISKGLID  109 (180)
T ss_dssp             HHHHHTTCSEEEECSCGGGHHH-HHHHHTTTCCSCEEEECCCSEEE
T ss_pred             HHHHHhccchhhcccchhhhHH-HHHhhccccccceecccccCccc
Confidence            9999999999999999888776 35667766666667777777754

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.81  E-value=0.0087  Score=44.03  Aligned_cols=34  Identities=24%  Similarity=0.330  Sum_probs=30.2

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      |++|+|+|.|..|.-|+..-.+-  |++|.++|.++
T Consensus         1 ~k~vgIlG~GQLgrMl~~Aa~~L--G~~v~vldp~~   34 (78)
T d3etja2           1 MKQVCVLGNGQLGRMLRQAGEPL--GIAVWPVGLDA   34 (78)
T ss_dssp             CEEEEEEBCSHHHHHHHHHHGGG--TEEEEEECTTS
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHc--CCEEEEEcCCC
Confidence            67899999999999999887776  99999999753

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.76  E-value=0.033  Score=44.11  Aligned_cols=98  Identities=18%  Similarity=0.199  Sum_probs=63.9

Q ss_pred             cEEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIGA----GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      ++|+|||+    |..|..+...|.+.  ||+|+.++.+.+.+                        .++.+..++++.-.
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L~~~--g~~V~pVnP~~~~i------------------------~G~~~y~sl~~lp~   55 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDLLSK--GFEVLPVNPNYDEI------------------------EGLKCYRSVRELPK   55 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHT--TCEEEEECTTCSEE------------------------TTEECBSSGGGSCT
T ss_pred             cEEEEEcccCCCCCcHHHHHHHHHHC--CCEEEEEccccccc------------------------cCccccccchhccc
Confidence            57999994    68899999999998  99988876532211                        24667778877445


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~  145 (480)
                      ..|++++|+|.               +.+.+++++....- ...+ +..+.   ...+++.+++++.+
T Consensus        56 ~~D~vvi~vp~---------------~~~~~~l~~~~~~g-~k~v-~~~~g---~~~~~~~~~a~~~g  103 (116)
T d1y81a1          56 DVDVIVFVVPP---------------KVGLQVAKEAVEAG-FKKL-WFQPG---AESEEIRRFLEKAG  103 (116)
T ss_dssp             TCCEEEECSCH---------------HHHHHHHHHHHHTT-CCEE-EECTT---SCCHHHHHHHHHHT
T ss_pred             cceEEEEEeCH---------------HHHHHHHHHHHhcC-CceE-Eeccc---hhhHHHHHHHHHcC
Confidence            67999999874               23456666655432 2233 33322   22345667777654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=94.75  E-value=0.013  Score=47.80  Aligned_cols=33  Identities=24%  Similarity=0.484  Sum_probs=30.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .+|.|||.|++|.-+|..|++.  |.+|+++++.+
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~--g~~Vtvie~~~   68 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKA--NMHVTLLDTAA   68 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhh--Ccceeeeeecc
Confidence            4799999999999999999998  99999999864

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.01  Score=55.33  Aligned_cols=33  Identities=18%  Similarity=0.278  Sum_probs=30.9

Q ss_pred             CcEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            1 MVKICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         1 imkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      |.+|.|||+|.-|+++|..|+++  |++|++++.+
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~--g~~V~iiEk~   33 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKL--NKKVLVIEKR   33 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGG--TCCEEEECSS
T ss_pred             CccEEEECCcHHHHHHHHHHHhC--CCcEEEEECC
Confidence            67899999999999999999998  9999999975

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.73  E-value=0.013  Score=46.42  Aligned_cols=33  Identities=21%  Similarity=0.317  Sum_probs=30.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .++.|||.|++|.-+|..|++.  |++|+++++.+
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~--g~~Vtlve~~~   54 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKL--GAQVSVVEARE   54 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhc--ccceEEEeeec
Confidence            4799999999999999999998  99999999854

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.71  E-value=0.0093  Score=47.93  Aligned_cols=33  Identities=36%  Similarity=0.472  Sum_probs=30.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .++.|||.|++|+-+|..|++.  |.+|+++.+++
T Consensus        26 ~~~viiG~G~iglE~A~~~~~~--G~~Vtvi~~~~   58 (123)
T d1dxla2          26 KKLVVIGAGYIGLEMGSVWGRI--GSEVTVVEFAS   58 (123)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred             CeEEEEccchHHHHHHHHHHhc--CCeEEEEEEcc
Confidence            4799999999999999999998  99999999864

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.63  E-value=0.024  Score=47.55  Aligned_cols=41  Identities=17%  Similarity=0.202  Sum_probs=34.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      .+|.|+|+|.+|+..++.+...  |.+|+++|+++++.+..++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~--G~~Vi~~~~~~~~~~~a~~   69 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAM--GLHVAAIDIDDAKLELARK   69 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeeccccHHHHHHHHHHc--CCccceecchhhHHHhhhc
Confidence            3799999999999877766655  8999999999999887664

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=94.60  E-value=0.019  Score=53.99  Aligned_cols=31  Identities=23%  Similarity=0.498  Sum_probs=29.2

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      |||.|+| .|++|..++..|.++  |++|+++|+
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~--g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQN--GHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEEC
Confidence            8999997 699999999999998  999999986

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=94.58  E-value=0.012  Score=54.48  Aligned_cols=32  Identities=28%  Similarity=0.417  Sum_probs=28.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK-IEVAVVDIS   35 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~   35 (480)
                      .+|.|||.|.+|+++|..|++.  | ++|+++|++
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~--G~~~V~liE~~   34 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTR--GWNNITVLDQG   34 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT--TCCCEEEECSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHc--CCCcEEEEeCC
Confidence            3799999999999999999998  7 479999986

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.49  E-value=0.058  Score=43.16  Aligned_cols=69  Identities=13%  Similarity=0.046  Sum_probs=46.6

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCC--CCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIY--EPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~--e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      .|-|+|.|.+|..++..|.    |++|.++|.++++++.+.....++.  ++.-.+.+.+             .-+.+|+
T Consensus         2 HivI~G~g~~g~~l~~~L~----~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~-------------a~i~~A~   64 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR----GSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEK-------------ANVRGAR   64 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC----GGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHH-------------TTCTTCS
T ss_pred             EEEEECCCHHHHHHHHHHc----CCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHH-------------hhhhcCc
Confidence            4789999999999999883    5789999999999988875322211  1111121111             1146889


Q ss_pred             EEEEeccC
Q 011654           81 IVFVSVNT   88 (480)
Q Consensus        81 vVii~Vpt   88 (480)
                      .++++.+.
T Consensus        65 ~vi~~~~~   72 (129)
T d2fy8a1          65 AVIVNLES   72 (129)
T ss_dssp             EEEECCSS
T ss_pred             EEEEeccc
Confidence            99998653

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=94.48  E-value=0.15  Score=45.74  Aligned_cols=41  Identities=17%  Similarity=0.205  Sum_probs=34.9

Q ss_pred             cEEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      +||++| | .+-+|..+|..|++.  |++|++.|+++++++.+.+
T Consensus         1 KKValITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~   43 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKD--GFAVAIADYNDATAKAVAS   43 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            588777 5 567999999999998  9999999999988776553

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.48  E-value=0.01  Score=49.77  Aligned_cols=91  Identities=15%  Similarity=0.300  Sum_probs=50.2

Q ss_pred             EEEEEcC-ChhHHHHHHHHHHcC-CCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            3 KICCIGA-GYVGGPTMAVIALKC-PKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         3 kI~VIGl-G~~G~~lA~~La~~~-~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      ||||||+ ||+|.-+...|+++. |-.++..+.-+..      .|. .+...          ..........+....++|
T Consensus         3 kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s------~G~-~~~~~----------~~~~~~~~~~~~~~~~~d   65 (154)
T d2gz1a1           3 TVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARS------AGK-SLKFK----------DQDITIEETTETAFEGVD   65 (154)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGG------TTC-EEEET----------TEEEEEEECCTTTTTTCS
T ss_pred             EEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccc------ccc-ccccc----------CCcccccccchhhhhhhh
Confidence            8999997 999999999888761 2234444443211      121 11000          011222223334467899


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      ++|.|.|..                  ...+........+..||+.|.
T Consensus        66 ~~f~~~~~~------------------~s~~~~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          66 IALFSAGSS------------------TSAKYAPYAVKAGVVVVDNTS   95 (154)
T ss_dssp             EEEECSCHH------------------HHHHHHHHHHHTTCEEEECSS
T ss_pred             hhhhccCcc------------------chhhHHhhhccccceehhcCh
Confidence            999997631                  111222233456888888764

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=94.46  E-value=0.045  Score=49.89  Aligned_cols=33  Identities=15%  Similarity=0.198  Sum_probs=30.1

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      +||.|+| .|.+|..++..|.++  ||+|++++|++
T Consensus         4 ~KILVtGatG~iG~~l~~~L~~~--G~~V~~~~R~~   37 (312)
T d1qyda_           4 SRVLIVGGTGYIGKRIVNASISL--GHPTYVLFRPE   37 (312)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC--CCEEEEEECCC
Confidence            6899999 599999999999998  99999999864

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.44  E-value=0.083  Score=45.35  Aligned_cols=73  Identities=19%  Similarity=0.167  Sum_probs=50.1

Q ss_pred             EEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE-Ee---cCHHHHhc
Q 011654            3 KICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF-FS---TDIEKHVA   77 (480)
Q Consensus         3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~-~t---~d~~~a~~   77 (480)
                      +|-|.| .|.+|..+|..|++.  |.+|++++|++++.+.+.+.           +.......-.. -.   ++.++++.
T Consensus        25 ~vlItGasgGIG~~ia~~la~~--G~~V~~~~r~~~~~~~~~~~-----------~~~~~~~~~~~~d~~~~~~~~~~~~   91 (191)
T d1luaa1          25 KAVVLAGTGPVGMRSAALLAGE--GAEVVLCGRKLDKAQAAADS-----------VNKRFKVNVTAAETADDASRAEAVK   91 (191)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHHH-----------HHHHHTCCCEEEECCSHHHHHHHTT
T ss_pred             EEEEECCCHHHHHHHHHHHHhh--ccchhhcccchHHHHHHHHH-----------HHhccchhhhhhhcccHHHHHHHhc
Confidence            567777 799999999999998  99999999999988776642           11110001111 12   23455678


Q ss_pred             cCcEEEEeccC
Q 011654           78 EADIVFVSVNT   88 (480)
Q Consensus        78 ~aDvVii~Vpt   88 (480)
                      +.|++|-+.+-
T Consensus        92 ~iDilin~Ag~  102 (191)
T d1luaa1          92 GAHFVFTAGAI  102 (191)
T ss_dssp             TCSEEEECCCT
T ss_pred             CcCeeeecCcc
Confidence            99999888653

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.43  E-value=0.018  Score=45.41  Aligned_cols=34  Identities=21%  Similarity=0.279  Sum_probs=30.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      .||+|+|.|..|.-||....+-  |++|+++|.+++
T Consensus        12 ~kigIlGgGQL~rMla~aA~~l--G~~v~v~d~~~~   45 (111)
T d1kjqa2          12 TRVMLLGSGELGKEVAIECQRL--GVEVIAVDRYAD   45 (111)
T ss_dssp             CEEEEESCSHHHHHHHHHHHTT--TCEEEEEESSTT
T ss_pred             CEEEEEeCCHHHHHHHHHHHHC--CCEEEEEcCCCC
Confidence            5899999999999999987776  999999998654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=94.39  E-value=0.017  Score=48.37  Aligned_cols=35  Identities=29%  Similarity=0.484  Sum_probs=30.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      +||.|||.|+.|..+|..|.+.++..+|++++.++
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            58999999999999999999884446899999765

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=94.37  E-value=0.079  Score=44.29  Aligned_cols=106  Identities=15%  Similarity=0.118  Sum_probs=75.1

Q ss_pred             HHHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCC
Q 011654          310 FVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHL  389 (480)
Q Consensus       310 ~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~  389 (480)
                      .++-+++..+--+.+++|.|+|-.+          -...+++.|+..|+.|.+++.-. -..++..              
T Consensus         9 ~~d~i~r~t~~~laGk~vvV~GYG~----------vGrG~A~~~rg~Ga~V~V~E~DP-i~alqA~--------------   63 (163)
T d1v8ba1           9 LPDGLMRATDFLISGKIVVICGYGD----------VGKGCASSMKGLGARVYITEIDP-ICAIQAV--------------   63 (163)
T ss_dssp             HHHHHHHHHCCCCTTSEEEEECCSH----------HHHHHHHHHHHHTCEEEEECSCH-HHHHHHH--------------
T ss_pred             HHHHHHHHhCceecCCEEEEecccc----------cchhHHHHHHhCCCEEEEEecCc-hhhHHHH--------------
Confidence            3344555555568999999999766          67899999999999999986532 1122221              


Q ss_pred             CCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011654          390 QPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDV  452 (480)
Q Consensus       390 ~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~  452 (480)
                             .+++++ .+.++|++.+|.+|-.|.++..  ++.+.+ +.|+..+ |+=--+.||.
T Consensus        64 -------mdGf~v-~~~~~a~~~aDi~vTaTGn~~v--I~~~h~-~~MKdga-Il~N~GHfd~  114 (163)
T d1v8ba1          64 -------MEGFNV-VTLDEIVDKGDFFITCTGNVDV--IKLEHL-LKMKNNA-VVGNIGHFDD  114 (163)
T ss_dssp             -------TTTCEE-CCHHHHTTTCSEEEECCSSSSS--BCHHHH-TTCCTTC-EEEECSSTTT
T ss_pred             -------hcCCcc-CchhHccccCcEEEEcCCCCcc--ccHHHH-HHhhCCe-EEEeccccch
Confidence                   234444 5789999999999999999863  455554 6788875 4555566654

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.32  E-value=0.016  Score=50.52  Aligned_cols=31  Identities=13%  Similarity=0.212  Sum_probs=29.2

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      |.|||.|.-|+..|..|+++  |++|++++.++
T Consensus         8 viViGaG~~Gl~~A~~La~~--G~~V~vlE~~~   38 (297)
T d2bcgg1           8 VIVLGTGITECILSGLLSVD--GKKVLHIDKQD   38 (297)
T ss_dssp             EEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             EEEECcCHHHHHHHHHHHHC--CCCEEEEcCCC
Confidence            89999999999999999998  99999999863

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=94.31  E-value=0.018  Score=45.63  Aligned_cols=33  Identities=3%  Similarity=-0.029  Sum_probs=30.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .+|+|||.|++|+-+|..|++.  |.+|+++++.+
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~--g~~vt~i~~~~   55 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNAT--GRRTVMLVRTE   55 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhc--chhheEeeccc
Confidence            4799999999999999999998  99999999864

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=94.28  E-value=0.055  Score=45.44  Aligned_cols=41  Identities=17%  Similarity=0.170  Sum_probs=33.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      .+|.|+|+|.+|+..++.+...  |.+++++|.++++.+.+++
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~--Ga~~i~~~~~~~~~~~a~~   72 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAM--GAHVVAFTTSEAKREAAKA   72 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEESSGGGHHHHHH
T ss_pred             CEEEEeccchHHHHHHHHhhcc--cccchhhccchhHHHHHhc
Confidence            3699999999999777666555  8999999999998876664

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=94.26  E-value=0.07  Score=44.26  Aligned_cols=70  Identities=17%  Similarity=0.228  Sum_probs=49.3

Q ss_pred             CCCCEEEEEeeccCCCCCcccCC-hHHHHHHHHHhCCCEEEEECC-CC-ChH-HHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          322 VSGKKIAILGFAFKKDTGDTRET-PAIDVCKGLLGDKAKLSIYDP-QV-TED-QIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       322 ~~~~~v~ilGla~K~~~~d~r~S-p~~~l~~~L~~~g~~V~~~DP-~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      +++.+|+++|        |+++| -+..++..|..-|.++.+.=| .. ... .....                    ..
T Consensus         1 l~gl~i~~vG--------D~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~--------------------~~   52 (153)
T d1pg5a2           1 IDGLVFALLG--------DLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDE--------------------LN   52 (153)
T ss_dssp             STTCEEEEEE--------CCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTT--------------------CC
T ss_pred             CCCCEEEEEC--------CCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhccc--------------------CC
Confidence            4688999998        99998 588999999999998654333 22 111 11111                    12


Q ss_pred             CceeeecCHHHhcccccEEEEE
Q 011654          398 KQVNVVWDAYQAAKDAHGVCIL  419 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~  419 (480)
                      ..+.+.+++++++++||+|...
T Consensus        53 ~~~~~~~d~~eai~~aDvvy~~   74 (153)
T d1pg5a2          53 YPVKEVENPFEVINEVDVLYVT   74 (153)
T ss_dssp             SCEEEESCGGGTGGGCSEEEEE
T ss_pred             CeEEEEeCHHHHhhcCCeEEEe
Confidence            3577889999999999987654

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=94.21  E-value=0.18  Score=45.19  Aligned_cols=40  Identities=8%  Similarity=0.036  Sum_probs=34.6

Q ss_pred             EEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI--GAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      ||++|  |.+-+|.++|..|+++  |++|++.|+++++++.+.+
T Consensus         3 KValITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~   44 (257)
T d2rhca1           3 EVALVTGATSGIGLEIARRLGKE--GLRVFVCARGEEGLRTTLK   44 (257)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            78877  5678999999999998  9999999999988776553

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.20  E-value=0.018  Score=52.71  Aligned_cols=32  Identities=19%  Similarity=0.292  Sum_probs=29.8

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      .||+|||+|.-|++.|..|+++  |++|++++.+
T Consensus         6 ~kViVIGaG~aGL~aA~~L~~~--G~~V~VlEa~   37 (449)
T d2dw4a2           6 GKVIIIGSGVSGLAAARQLQSF--GMDVTLLEAR   37 (449)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHT--TCEEEEECSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhC--CCCEEEEeCC
Confidence            3799999999999999999998  9999999974

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.061  Score=45.92  Aligned_cols=78  Identities=15%  Similarity=0.069  Sum_probs=49.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe--cC---HHHHh
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS--TD---IEKHV   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t--~d---~~~a~   76 (480)
                      .+|.|||+|-+|.+++..|.+.+ ..++++++|++++.+++.+-        .+++-.. .......+  .+   ..+.+
T Consensus        19 k~vlIlGaGGaarai~~al~~~g-~~~i~i~nR~~~~~~~~~~l--------~~~~~~~-~~~~~~~~~~~~~~~~~~~~   88 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEG-LKEIKLFNRRDEFFDKALAF--------AQRVNEN-TDCVVTVTDLADQQAFAEAL   88 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTT-CSEEEEEECSSTTHHHHHHH--------HHHHHHH-SSCEEEEEETTCHHHHHHHH
T ss_pred             CEEEEECCcHHHHHHHHHHhhcC-CceEeeeccchHHHHHHHHH--------HHHHHhh-cCcceEeeecccccchhhhh
Confidence            47999999999999999999872 34899999997766544320        0001000 01111221  12   33446


Q ss_pred             ccCcEEEEeccCC
Q 011654           77 AEADIVFVSVNTP   89 (480)
Q Consensus        77 ~~aDvVii~Vptp   89 (480)
                      ..+|+||=|+|..
T Consensus        89 ~~~diiIN~Tp~G  101 (182)
T d1vi2a1          89 ASADILTNGTKVG  101 (182)
T ss_dssp             HTCSEEEECSSTT
T ss_pred             cccceeccccCCc
Confidence            7899999997754

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.07  E-value=0.02  Score=48.31  Aligned_cols=41  Identities=17%  Similarity=0.115  Sum_probs=34.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      .+|.|+|+|.+|+..++.+...  |.+|+++|+++++++..++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~--G~~vi~~~~~~~k~~~a~~   69 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAM--GAETYVISRSSRKREDAMK   69 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCEEEEEESSSTTHHHHHH
T ss_pred             CEEEEECCCCcchhHHHHhhhc--cccccccccchhHHHHhhc
Confidence            3799999999999877665555  8999999999998887765

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.04  E-value=0.018  Score=49.23  Aligned_cols=77  Identities=13%  Similarity=0.184  Sum_probs=51.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      ++|.|||+|-++.+++..|.+.  | +|++++|+.++.+.+.+..........   .     ..+.. .++......+|+
T Consensus        19 k~vlIlGaGG~arai~~aL~~~--~-~i~I~nR~~~ka~~l~~~~~~~~~~~~---~-----~~~~~-~~~~~~~~~~dl   86 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKD--N-NIIIANRTVEKAEALAKEIAEKLNKKF---G-----EEVKF-SGLDVDLDGVDI   86 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSS--S-EEEEECSSHHHHHHHHHHHHHHHTCCH---H-----HHEEE-ECTTCCCTTCCE
T ss_pred             CEEEEECCcHHHHHHHHHHccc--c-ceeeehhhhhHHHHHHHHHHHhhchhh---h-----hhhhh-hhhhhccchhhh
Confidence            4799999999999999888764  5 899999999998887642000000000   0     01222 334444678999


Q ss_pred             EEEeccCCC
Q 011654           82 VFVSVNTPT   90 (480)
Q Consensus        82 Vii~Vptp~   90 (480)
                      +|-|+|.+.
T Consensus        87 iIn~tp~g~   95 (177)
T d1nvta1          87 IINATPIGM   95 (177)
T ss_dssp             EEECSCTTC
T ss_pred             hccCCcccc
Confidence            999987654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=94.03  E-value=0.088  Score=44.37  Aligned_cols=41  Identities=20%  Similarity=0.165  Sum_probs=35.5

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      +|.|+|+|-+|+..+..++..+ +.+|++.|+++++.+..++
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g-~~~Vi~~~~~~~k~~~a~~   71 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAG-AARIIGVDINKDKFAKAKE   71 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH
T ss_pred             EEEEECCCCcHHHHHHHHHHcC-CceEEeecCcHHHHHHHHH
Confidence            6899999999999888888762 4799999999999888775

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=93.98  E-value=0.063  Score=45.22  Aligned_cols=96  Identities=20%  Similarity=0.158  Sum_probs=68.4

Q ss_pred             CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHH-hhhccccCCCCCCCCCCCCCCCCCce
Q 011654          322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQR-DLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      .+..+|.|+|..-          -.+.=++..++-|++|.+||-.....+..+ .+.                    ..+
T Consensus        30 v~pa~V~ViGaGv----------aG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~--------------------~~~   79 (168)
T d1pjca1          30 VKPGKVVILGGGV----------VGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG--------------------SRV   79 (168)
T ss_dssp             BCCCEEEEECCSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG--------------------GGS
T ss_pred             CCCcEEEEECCCh----------HHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc--------------------ccc
Confidence            4678999999744          778888888999999999998655432211 111                    111


Q ss_pred             ee----ecCHHHhcccccEEEEEeccccccc--ccHHHHHHhcCCCCEEEEcC
Q 011654          401 NV----VWDAYQAAKDAHGVCILTEWDEFKT--LDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       401 ~~----~~~~~~a~~~ad~vvi~t~h~~~~~--~~~~~~~~~~~~~~~i~D~~  447 (480)
                      +.    ...+++++++||+||-..-+|--+.  +=-++..+.|++..+|||..
T Consensus        80 ~~~~~~~~~l~~~~~~aDivI~aalipG~~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1          80 ELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             EEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             eeehhhhhhHHHhhccCcEEEEeeecCCcccCeeecHHHHhhcCCCcEEEEee
Confidence            21    2346788999999998888876554  22367788999999999974

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=93.94  E-value=0.17  Score=39.76  Aligned_cols=104  Identities=14%  Similarity=0.094  Sum_probs=70.0

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      ++|+|+|.|-+      .++++..+.+.|++.|++|..-.|....  +                         .++....
T Consensus         2 KsIAVvGaS~~------~~k~g~~v~~~L~~~g~~V~pVnP~~~~--i-------------------------~G~~~y~   48 (116)
T d1y81a1           2 RKIALVGASKN------PAKYGNIILKDLLSKGFEVLPVNPNYDE--I-------------------------EGLKCYR   48 (116)
T ss_dssp             CEEEEETCCSC------TTSHHHHHHHHHHHTTCEEEEECTTCSE--E-------------------------TTEECBS
T ss_pred             cEEEEEcccCC------CCCcHHHHHHHHHHCCCEEEEEcccccc--c-------------------------cCccccc
Confidence            68999998644      4789999999999999999888886532  1                         1334455


Q ss_pred             CHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH---HHhhcCcEEEE
Q 011654          405 DAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE---KLREIGFIVYS  464 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~~~~~g~~y~~  464 (480)
                      |+.+.=...|++++.+..+.-.++- ++..+. ..+ .++-..+...++   .+++.|+++.|
T Consensus        49 sl~~lp~~~D~vvi~vp~~~~~~~l-~~~~~~-g~k-~v~~~~g~~~~~~~~~a~~~gi~vig  108 (116)
T d1y81a1          49 SVRELPKDVDVIVFVVPPKVGLQVA-KEAVEA-GFK-KLWFQPGAESEEIRRFLEKAGVEYSF  108 (116)
T ss_dssp             SGGGSCTTCCEEEECSCHHHHHHHH-HHHHHT-TCC-EEEECTTSCCHHHHHHHHHHTCEEEC
T ss_pred             cchhccccceEEEEEeCHHHHHHHH-HHHHhc-CCc-eEEeccchhhHHHHHHHHHcCCEEEc
Confidence            6676556779999998877644422 233332 334 455556677654   35567888743

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=93.88  E-value=0.024  Score=45.56  Aligned_cols=33  Identities=24%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .++.|||.|++|+-+|..|++.  |.+|+++++.+
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~--G~~Vtive~~~   59 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTL--GSRLDVVEMMD   59 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHH--TCEEEEECSSS
T ss_pred             CeEEEECCCHHHHHHHHHhhcC--CCEEEEEEeec
Confidence            4799999999999999999998  99999998754

>d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Polymyxin resistance protein ArnA (PrmI)
species: Escherichia coli [TaxId: 562]

Probab=93.80  E-value=0.046  Score=51.13  Aligned_cols=39  Identities=21%  Similarity=0.433  Sum_probs=32.2

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHH
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAW   42 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l   42 (480)
                      |||.|.| .|++|..++..|.++  | ++|+++|+.......+
T Consensus         1 MKILITG~tGfiG~~l~~~Ll~~--g~~~V~~ld~~~~~~~~~   41 (342)
T d2blla1           1 MRVLILGVNGFIGNHLTERLLRE--DHYEVYGLDIGSDAISRF   41 (342)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHS--TTCEEEEEESCCGGGGGG
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC--CCCEEEEEeCCCcchhhh
Confidence            8999997 699999999999987  7 5899999875544433

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.71  E-value=0.024  Score=51.51  Aligned_cols=31  Identities=23%  Similarity=0.330  Sum_probs=28.8

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      .|.|||.|.+|+++|..|+++  |++|+++|..
T Consensus         5 DvvIIGaGi~Gls~A~~La~~--G~~V~viE~~   35 (281)
T d2gf3a1           5 DVIVVGAGSMGMAAGYQLAKQ--GVKTLLVDAF   35 (281)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCC
Confidence            489999999999999999998  9999999973

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.34  Score=43.11  Aligned_cols=84  Identities=19%  Similarity=0.142  Sum_probs=56.4

Q ss_pred             EEEEE-cC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCc
Q 011654            3 KICCI-GA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEAD   80 (480)
Q Consensus         3 kI~VI-Gl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aD   80 (480)
                      |+++| |+ +-+|..+|..|+++  |.+|+++|+++++++.+.+.                          +.+  ....
T Consensus         8 kv~lITGas~GIG~~ia~~la~~--G~~V~l~~r~~~~l~~~~~~--------------------------~~~--~~~~   57 (244)
T d1yb1a_           8 EIVLITGAGHGIGRLTAYEFAKL--KSKLVLWDINKHGLEETAAK--------------------------CKG--LGAK   57 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHH--------------------------HHH--TTCC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHH--------------------------HHh--cCCc
Confidence            45555 65 56999999999999  99999999999988876641                          111  1234


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      +..+.+  .          .-|...+++.++.+.+....=.++|+...
T Consensus        58 ~~~~~~--D----------vs~~~~v~~~~~~i~~~~g~idilinnag   93 (244)
T d1yb1a_          58 VHTFVV--D----------CSNREDIYSSAKKVKAEIGDVSILVNNAG   93 (244)
T ss_dssp             EEEEEC--C----------TTCHHHHHHHHHHHHHHTCCCSEEEECCC
T ss_pred             EEEEEe--e----------CCCHHHHHHHHHHHHHHcCCCceeEeecc
Confidence            444432  1          12445677788888776666666776554

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.69  E-value=0.017  Score=51.01  Aligned_cols=34  Identities=15%  Similarity=0.167  Sum_probs=30.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCC-------CeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPK-------IEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G-------~~V~~~D~~~~   37 (480)
                      .||+|||.|.-|++.|..|+++  |       ++|++||.++.
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~--G~~~~~~~~~V~v~E~~~~   43 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKA--ADTTEDLDMAVDMLEMLPT   43 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHH--HHHSTTCCEEEEEEESSSS
T ss_pred             cEEEEECcCHHHHHHHHHHHHc--CCccccCCCceEEEecCCC
Confidence            5899999999999999999998  6       58999998764

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.68  E-value=0.21  Score=40.31  Aligned_cols=31  Identities=19%  Similarity=0.469  Sum_probs=24.1

Q ss_pred             EEEEEc-CChhHHHHHHHHHHcCCCCeEEE-EeC
Q 011654            3 KICCIG-AGYVGGPTMAVIALKCPKIEVAV-VDI   34 (480)
Q Consensus         3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~-~D~   34 (480)
                      ||+|+| .|.||..++..+.+. +++++.+ +|+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~-~~~~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAA-DDLTLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHS-TTSEEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhC-CCCEEEEEEec
Confidence            799999 599999999887765 3777654 553

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.68  E-value=0.12  Score=43.73  Aligned_cols=40  Identities=15%  Similarity=0.249  Sum_probs=34.1

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~   44 (480)
                      +|.|+|+|.+|+..++.+...  |. +|++.|+++++.+..++
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~--Ga~~Vi~~d~~~~r~~~a~~   71 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIA--GASRIIAIDINGEKFPKAKA   71 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred             EEEEECCChHHHHHHHHHHHh--CCceeeeeccchHHHHHHHH
Confidence            689999999999888777766  65 78899999999887776

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.67  E-value=0.06  Score=45.17  Aligned_cols=40  Identities=18%  Similarity=0.257  Sum_probs=34.5

Q ss_pred             EEEEEcC-ChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGA-GYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGl-G~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~   44 (480)
                      +|.|+|+ |.+|...++.+...  | .+|+++++++++.+.+++
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~--g~~~V~~~~~~~~~~~~~~~   71 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAV--SGATIIGVDVREEAVEAAKR   71 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHH--TCCEEEEEESSHHHHHHHHH
T ss_pred             EEEEEeccccceeeeeeccccc--ccccccccccchhhHHHHHH
Confidence            6899995 99999888877776  5 699999999999988875

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.63  E-value=0.28  Score=44.72  Aligned_cols=39  Identities=13%  Similarity=0.181  Sum_probs=34.5

Q ss_pred             EEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011654            3 KICCI--GAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN   43 (480)
Q Consensus         3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~   43 (480)
                      |++||  |.|.+|.++|..|++.  |++|++.|++.++.+...
T Consensus        26 K~alITGas~GIG~aiA~~la~~--Ga~Vii~~r~~~~l~~~~   66 (294)
T d1w6ua_          26 KVAFITGGGTGLGKGMTTLLSSL--GAQCVIASRKMDVLKATA   66 (294)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHH
Confidence            77777  6899999999999998  999999999998876654

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.63  E-value=0.15  Score=43.09  Aligned_cols=94  Identities=18%  Similarity=0.201  Sum_probs=55.6

Q ss_pred             cEEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCC-CCCCCCChHHHHHhhcCCCEEE-e-cCHHHHhc
Q 011654            2 VKICCIGAG-YVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQ-LPIYEPGLEDVVTQCRGRNLFF-S-TDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~-~~~~e~~l~~l~~~~~~~~l~~-t-~d~~~a~~   77 (480)
                      ++|.|||-+ .+|.|||..|+++  |..|+..+.+...  .+..+. ..+...+         ...+.. + +.+++...
T Consensus        30 K~vvVIGrS~iVG~Pla~lL~~~--gaTVt~~~~~~~~--~~~~~~~~~~~~~~---------~~~~~~~~~~~lk~~~~   96 (171)
T d1edza1          30 KKCIVINRSEIVGRPLAALLAND--GATVYSVDVNNIQ--KFTRGESLKLNKHH---------VEDLGEYSEDLLKKCSL   96 (171)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTT--SCEEEEECSSEEE--EEESCCCSSCCCCE---------EEEEEECCHHHHHHHHH
T ss_pred             CEEEEECCccccHHHHHHHHHHC--CCEEEEecccccc--ccccccceeeeeec---------cccccccchhHHhhccc
Confidence            479999966 5799999999998  8999998865210  011110 0000000         001111 1 12556667


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      .+|++|.++|.|.-.        ..           ..++++|.+||+-+
T Consensus        97 ~aDIvIsavG~p~~~--------i~-----------~d~ik~GavvIDvG  127 (171)
T d1edza1          97 DSDVVITGVPSENYK--------FP-----------TEYIKEGAVCINFA  127 (171)
T ss_dssp             HCSEEEECCCCTTCC--------BC-----------TTTSCTTEEEEECS
T ss_pred             cCCEEEEccCCCccc--------cC-----------hhhcccCceEeecc
Confidence            899999999876310        00           13467899998754

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=93.61  E-value=0.024  Score=50.46  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=31.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      .+|.|||.|.-|+..|..|++.  |++|++++.+++
T Consensus        50 k~VvIIGaGpAGl~aA~~l~~~--G~~v~l~E~~~~   83 (233)
T d1djqa3          50 DSVLIVGAGPSGSEAARVLMES--GYTVHLTDTAEK   83 (233)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSSSS
T ss_pred             ceEEEEcccHHHHHHHHHHHHh--ccceeeEeeccc
Confidence            4799999999999999999998  999999998764

>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Aldehyde reductase II
species: Sporobolomyces salmonicolor [TaxId: 5005]

Probab=93.57  E-value=0.0076  Score=57.08  Aligned_cols=40  Identities=18%  Similarity=0.226  Sum_probs=35.3

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN   43 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~   43 (480)
                      .+|.|.| .|++|..++..|.++  |++|++..|+.++.+.+.
T Consensus        12 k~VlVTG~sGfIGs~l~~~Ll~~--G~~V~~~vR~~~~~~~~~   52 (342)
T d1y1pa1          12 SLVLVTGANGFVASHVVEQLLEH--GYKVRGTARSASKLANLQ   52 (342)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHH
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEeCCchhHHHHH
Confidence            4799997 699999999999998  999999999988776654

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.22  Score=44.77  Aligned_cols=40  Identities=13%  Similarity=0.280  Sum_probs=34.0

Q ss_pred             EEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI--GAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++|  |.+-+|.++|..|++.  |++|+++++++++++.+.+
T Consensus        11 Kv~lITGas~GIG~aiA~~la~~--G~~Vv~~~r~~~~l~~~~~   52 (257)
T d1xg5a_          11 RLALVTGASGGIGAAVARALVQQ--GLKVVGCARTVGNIEELAA   52 (257)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            55555  4689999999999998  9999999999998877653

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=93.35  E-value=0.022  Score=51.48  Aligned_cols=32  Identities=31%  Similarity=0.422  Sum_probs=30.0

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      |||.|.|. |++|..++..|.++  ||+|++.|++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~--g~~Vi~~~r~   34 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGK--NVEVIPTDVQ   34 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTS--SEEEEEECTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhC--CCEEEEeech
Confidence            89999996 99999999999988  9999999975

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=93.26  E-value=0.28  Score=44.09  Aligned_cols=39  Identities=23%  Similarity=0.368  Sum_probs=32.9

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN   43 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~   43 (480)
                      |+++| | .+-+|.++|..|++.  |++|++.|+++++++...
T Consensus         5 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~   45 (258)
T d1iy8a_           5 RVVLITGGGSGLGRATAVRLAAE--GAKLSLVDVSSEGLEASK   45 (258)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence            55655 5 567999999999999  999999999999877655

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.25  E-value=0.031  Score=51.69  Aligned_cols=31  Identities=16%  Similarity=0.336  Sum_probs=28.9

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      |+|||+|.-|++.|..|+++  |++|++++.+.
T Consensus         2 ViVIGaG~aGL~aA~~L~~~--G~~V~VlE~~~   32 (383)
T d2v5za1           2 VVVVGGGISGMAAAKLLHDS--GLNVVVLEARD   32 (383)
T ss_dssp             EEEECCBHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHhC--CCCEEEEecCC
Confidence            89999999999999999998  99999999753

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=93.19  E-value=0.045  Score=43.98  Aligned_cols=112  Identities=12%  Similarity=0.059  Sum_probs=64.4

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      |++.|+|.+-          -...+++.|.+.|.+|.+.|+.-...+...+.+   .   ..         ...+.+-.+
T Consensus         1 k~~iIiG~G~----------~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~---~---~~---------~~gd~~~~~   55 (134)
T d2hmva1           1 KQFAVIGLGR----------FGGSIVKELHRMGHEVLAVDINEEKVNAYASYA---T---HA---------VIANATEEN   55 (134)
T ss_dssp             CCEEEECCSH----------HHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTC---S---EE---------EECCTTCTT
T ss_pred             CEEEEECCCH----------HHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhC---C---cc---------eeeecccch
Confidence            5788899743          689999999999999999999543222111111   0   00         000111123


Q ss_pred             CHHHh-cccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCcE
Q 011654          405 DAYQA-AKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGFI  461 (480)
Q Consensus       405 ~~~~a-~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~~  461 (480)
                      .++++ ++++|++++.+..+.=..+-...+......+.+|.=+.+.-..+.++..|..
T Consensus        56 ~l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~~~~~~~~~l~~~Gad  113 (134)
T d2hmva1          56 ELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYYHHKVLEKIGAD  113 (134)
T ss_dssp             HHHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHHHHHHHHHHTCS
T ss_pred             hhhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeecccHhHHHHHHHCCCC
Confidence            34454 7889999998876643333334445555555455555554444555666653

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.11  E-value=0.082  Score=43.16  Aligned_cols=97  Identities=10%  Similarity=-0.004  Sum_probs=63.5

Q ss_pred             cEEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIGA----GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      .+|+|||+    |..|..++..|.+.  ||+|+.++.....+                        .+..+..++++.-.
T Consensus        20 ksIAVVGaS~~~~~~g~~v~~~L~~~--g~~v~pVnP~~~~i------------------------~G~~~~~sl~dlp~   73 (139)
T d2d59a1          20 KKIALVGASPKPERDANIVMKYLLEH--GYDVYPVNPKYEEV------------------------LGRKCYPSVLDIPD   73 (139)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHHHHT--TCEEEEECTTCSEE------------------------TTEECBSSGGGCSS
T ss_pred             CeEEEEeecCCCCCchHHHHHHHHHC--CCEEEEECCccccc------------------------CCCcccccccccCc
Confidence            47999996    57999999999988  99988887532111                        24566777777555


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      ..|++++++|.               +.+.++++++...- ...+++.    +.+..+++.+.+++.
T Consensus        74 ~iD~v~i~vp~---------------~~~~~~~~e~~~~g-~k~v~~~----~G~~~ee~~~~a~~~  120 (139)
T d2d59a1          74 KIEVVDLFVKP---------------KLTMEYVEQAIKKG-AKVVWFQ----YNTYNREASKKADEA  120 (139)
T ss_dssp             CCSEEEECSCH---------------HHHHHHHHHHHHHT-CSEEEEC----TTCCCHHHHHHHHHT
T ss_pred             cceEEEEEeCH---------------HHHHHHHHHHHHhC-CCEEEEe----ccccCHHHHHHHHHC
Confidence            78999999873               34566677666542 2333332    222334555666554

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.04  E-value=0.27  Score=43.96  Aligned_cols=40  Identities=13%  Similarity=0.147  Sum_probs=34.0

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      ||++| | .+-+|..+|..|++.  |++|+++|++++.++.+.+
T Consensus        11 KvalITGas~GIG~a~a~~la~~--Ga~V~~~~r~~~~l~~~~~   52 (251)
T d2c07a1          11 KVALVTGAGRGIGREIAKMLAKS--VSHVICISRTQKSCDSVVD   52 (251)
T ss_dssp             CEEEEESTTSHHHHHHHHHHTTT--SSEEEEEESSHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence            67777 5 578999999999998  9999999999988776553

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=93.03  E-value=0.029  Score=52.15  Aligned_cols=33  Identities=18%  Similarity=0.271  Sum_probs=30.7

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      .|+|||+|.-|+.+|..|.+.  |++|+++|.+++
T Consensus         9 dV~IIGAG~sGl~~a~~L~~~--G~~v~i~Ek~~~   41 (298)
T d1w4xa1           9 DVLVVGAGFSGLYALYRLREL--GRSVHVIETAGD   41 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred             CEEEECccHHHHHHHHHHHhC--CCCEEEEEcCCC
Confidence            699999999999999999998  999999998765

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=92.92  E-value=0.022  Score=45.95  Aligned_cols=36  Identities=17%  Similarity=0.419  Sum_probs=28.3

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEE-EeCCHHHH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAV-VDISVSRI   39 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~-~D~~~~~v   39 (480)
                      +|.|+|+|.+|..++..+... .++++++ +|-|+++.
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~-~~~~iv~fiDdd~~k~   41 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFG-ESFELRGFFDVDPEKV   41 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCC-SSEEEEEEEESCTTTT
T ss_pred             eEEEEcCCHHHHHHHHhHhhc-CCcEEEEEEeCchHhc
Confidence            799999999999999876543 3788765 68887654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.68  E-value=0.39  Score=42.86  Aligned_cols=39  Identities=13%  Similarity=0.106  Sum_probs=32.2

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN   43 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~   43 (480)
                      |+++| | .+-+|..+|..|++.  |++|++.|+++++.+...
T Consensus         6 K~~lITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~   46 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEA--GCSVVVASRNLEEASEAA   46 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence            45544 5 577999999999999  999999999998876544

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=92.62  E-value=0.076  Score=43.94  Aligned_cols=100  Identities=7%  Similarity=-0.096  Sum_probs=65.1

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecC
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWD  405 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  405 (480)
                      ||+|+|...          ...-++..|.+.|.+|.+++-...........   +.            ...........+
T Consensus         2 kI~IiGaG~----------iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~---~~------------~~~~~~~~~~~~   56 (167)
T d1ks9a2           2 KITVLGCGA----------LGQLWLTALCKQGHEVQGWLRVPQPYCSVNLV---ET------------DGSIFNESLTAN   56 (167)
T ss_dssp             EEEEECCSH----------HHHHHHHHHHHTTCEEEEECSSCCSEEEEEEE---CT------------TSCEEEEEEEES
T ss_pred             EEEEECcCH----------HHHHHHHHHHHCCCceEEEEcCHHHhhhhccc---cC------------Cccccccccccc
Confidence            799999754          78889999999999999998755432111100   00            000111122345


Q ss_pred             HHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCC
Q 011654          406 AYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILD  451 (480)
Q Consensus       406 ~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~  451 (480)
                      ..+++.++|.+++.++-....+ -.+.+...+.+...|+...|=+.
T Consensus        57 ~~~~~~~~D~iii~vka~~~~~-~~~~l~~~~~~~~~Iv~~qNG~~  101 (167)
T d1ks9a2          57 DPDFLATSDLLLVTLKAWQVSD-AVKSLASTLPVTTPILLIHNGMG  101 (167)
T ss_dssp             CHHHHHTCSEEEECSCGGGHHH-HHHHHHTTSCTTSCEEEECSSSC
T ss_pred             hhhhhcccceEEEeecccchHH-HHHhhccccCcccEEeeccCccc
Confidence            5677899999999998776544 34566666666667888887554

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=92.57  E-value=0.37  Score=43.20  Aligned_cols=111  Identities=10%  Similarity=0.048  Sum_probs=67.2

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHh--ccCc
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHV--AEAD   80 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~--~~aD   80 (480)
                      +|.=+|||.-..  +..+++.  |.+|+++|++++.++..++..           .......+ ....+..+..  ...|
T Consensus       123 ~VLDiGcGsG~l--~i~aa~~--g~~V~gvDis~~av~~A~~na-----------~~n~~~~~-~~~~d~~~~~~~~~fD  186 (254)
T d2nxca1         123 KVLDLGTGSGVL--AIAAEKL--GGKALGVDIDPMVLPQAEANA-----------KRNGVRPR-FLEGSLEAALPFGPFD  186 (254)
T ss_dssp             EEEEETCTTSHH--HHHHHHT--TCEEEEEESCGGGHHHHHHHH-----------HHTTCCCE-EEESCHHHHGGGCCEE
T ss_pred             EEEEcccchhHH--HHHHHhc--CCEEEEEECChHHHHHHHHHH-----------HHcCCcee-EEeccccccccccccc
Confidence            566789997544  4456666  889999999999887766420           00000111 2344544433  3578


Q ss_pred             EEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhcC
Q 011654           81 IVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHNS  145 (480)
Q Consensus        81 vVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~~  145 (480)
                      +|+.....               ..+.+.++.+.+.+++|-.+++ |.+.....+.+.+.+++.+
T Consensus       187 ~V~ani~~---------------~~l~~l~~~~~~~LkpGG~lil-Sgil~~~~~~v~~~~~~~G  235 (254)
T d2nxca1         187 LLVANLYA---------------ELHAALAPRYREALVPGGRALL-TGILKDRAPLVREAMAGAG  235 (254)
T ss_dssp             EEEEECCH---------------HHHHHHHHHHHHHEEEEEEEEE-EEEEGGGHHHHHHHHHHTT
T ss_pred             hhhhcccc---------------ccHHHHHHHHHHhcCCCcEEEE-EecchhhHHHHHHHHHHCC
Confidence            88765321               2356777888889998876665 4443344456666666653

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=92.51  E-value=0.38  Score=43.09  Aligned_cols=40  Identities=23%  Similarity=0.441  Sum_probs=33.0

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++| | .+-+|..+|..|++.  |++|++.|++++.++.+.+
T Consensus         6 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~   47 (260)
T d1zema1           6 KVCLVTGAGGNIGLATALRLAEE--GTAIALLDMNREALEKAEA   47 (260)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            45555 6 477999999999998  9999999999988776553

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=92.50  E-value=0.51  Score=42.22  Aligned_cols=39  Identities=10%  Similarity=-0.003  Sum_probs=33.0

Q ss_pred             EEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011654            3 KICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN   43 (480)
Q Consensus         3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~   43 (480)
                      ++-|.| .+-+|..+|..|+++  |++|++.++++++.+.+.
T Consensus         8 ~alITGas~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~   47 (258)
T d1ae1a_           8 TALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECL   47 (258)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence            355666 688999999999999  999999999998877654

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=92.46  E-value=0.049  Score=48.35  Aligned_cols=33  Identities=21%  Similarity=0.178  Sum_probs=30.3

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      .|.|||.|..|+..|..|+++  |++|+++|+++.
T Consensus         4 DViIIGaG~aGl~aA~~la~~--G~~V~liEk~~~   36 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEE--GANVLLLDKGNK   36 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCCC
Confidence            389999999999999999998  999999998754

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=92.39  E-value=0.54  Score=41.83  Aligned_cols=40  Identities=13%  Similarity=0.014  Sum_probs=34.0

Q ss_pred             EEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI--GAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++|  |.+-+|..+|..|++.  |++|++.|+++++.+.+.+
T Consensus         7 K~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~   48 (251)
T d1zk4a1           7 KVAIITGGTLGIGLAIATKFVEE--GAKVMITGRHSDVGEKAAK   48 (251)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            56666  4688999999999998  9999999999988776553

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.37  E-value=0.3  Score=43.63  Aligned_cols=40  Identities=25%  Similarity=0.323  Sum_probs=33.5

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++| | .+-+|.++|..|++.  |.+|++.|+++++.+...+
T Consensus         4 KvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~   45 (254)
T d2gdza1           4 KVALVTGAAQGIGRAFAEALLLK--GAKVALVDWNLEAGVQCKA   45 (254)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            56666 5 577999999999998  9999999999988776553

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.37  E-value=0.57  Score=37.79  Aligned_cols=106  Identities=20%  Similarity=0.144  Sum_probs=72.5

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      +.++|||+|.|-+      .++++..+++.|.+.|++|.--.|...+  +                         .+...
T Consensus        18 ~~ksIAVVGaS~~------~~~~g~~v~~~L~~~g~~v~pVnP~~~~--i-------------------------~G~~~   64 (139)
T d2d59a1          18 RYKKIALVGASPK------PERDANIVMKYLLEHGYDVYPVNPKYEE--V-------------------------LGRKC   64 (139)
T ss_dssp             HCCEEEEETCCSC------TTSHHHHHHHHHHHTTCEEEEECTTCSE--E-------------------------TTEEC
T ss_pred             cCCeEEEEeecCC------CCCchHHHHHHHHHCCCEEEEECCcccc--c-------------------------CCCcc
Confidence            4679999998654      4789999999999999999988887532  1                         12344


Q ss_pred             ecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH---HHhhcCcEEEE
Q 011654          403 VWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE---KLREIGFIVYS  464 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~~~~~g~~y~~  464 (480)
                      ..++.+.-...|++++.+.-....++ .+++.+. +.+ .|+=.-+.++++   .+++.|+.+.|
T Consensus        65 ~~sl~dlp~~iD~v~i~vp~~~~~~~-~~e~~~~-g~k-~v~~~~G~~~ee~~~~a~~~gi~vig  126 (139)
T d2d59a1          65 YPSVLDIPDKIEVVDLFVKPKLTMEY-VEQAIKK-GAK-VVWFQYNTYNREASKKADEAGLIIVA  126 (139)
T ss_dssp             BSSGGGCSSCCSEEEECSCHHHHHHH-HHHHHHH-TCS-EEEECTTCCCHHHHHHHHHTTCEEEE
T ss_pred             cccccccCccceEEEEEeCHHHHHHH-HHHHHHh-CCC-EEEEeccccCHHHHHHHHHCCCEEEc
Confidence            55677755679999998876654332 2333333 334 555567777754   45577888754

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.32  E-value=0.39  Score=42.98  Aligned_cols=40  Identities=20%  Similarity=0.151  Sum_probs=34.3

Q ss_pred             EEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI--GAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++|  |.+-+|.++|..|++.  |++|++.|+++++++.+.+
T Consensus        12 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~   53 (255)
T d1fmca_          12 KCAIITGAGAGIGKEIAITFATA--GASVVVSDINADAANHVVD   53 (255)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHTT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            67777  5688999999999998  9999999999988776553

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.064  Score=48.15  Aligned_cols=40  Identities=20%  Similarity=0.263  Sum_probs=35.5

Q ss_pred             EEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI--GAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++|  |.+.+|..+|..|++.  |++|++.|+++++++.+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~--G~~Vi~~~r~~~~l~~~~~   48 (245)
T d2ag5a1           7 KVIILTAAAQGIGQAAALAFARE--GAKVIATDINESKLQELEK   48 (245)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHGGGGG
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHh
Confidence            67777  6899999999999999  9999999999998877665

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.26  E-value=0.39  Score=43.06  Aligned_cols=39  Identities=10%  Similarity=0.014  Sum_probs=32.7

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN   43 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~   43 (480)
                      |+++| | .+-+|..+|..|++.  |++|++.|+++++++.+.
T Consensus         9 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~   49 (259)
T d2ae2a_           9 CTALVTGGSRGIGYGIVEELASL--GASVYTCSRNQKELNDCL   49 (259)
T ss_dssp             CEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence            45555 5 467999999999998  999999999999887655

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.26  E-value=0.2  Score=46.20  Aligned_cols=39  Identities=13%  Similarity=0.211  Sum_probs=32.8

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN   43 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~   43 (480)
                      |+++| | .+-+|.++|..|++.  |++|++.|+++++++...
T Consensus        13 KvalITGas~GIG~aia~~la~~--Ga~Vvi~~r~~~~l~~~~   53 (297)
T d1yxma1          13 QVAIVTGGATGIGKAIVKELLEL--GSNVVIASRKLERLKSAA   53 (297)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence            45555 5 577999999999998  999999999998877654

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.35  Score=41.37  Aligned_cols=122  Identities=11%  Similarity=0.074  Sum_probs=72.2

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHH-----HHhhh---ccccCCCCCCCCCCCCCC
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQI-----QRDLS---MKKFDWDHPIHLQPMSPP  395 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~-----~~~~~---~~~~~~~~~~~~~~~~~~  395 (480)
                      -+||+|+|...          ....++..+..+|++|.+||+.-...+.     .+.+.   ..++-. .+.........
T Consensus         4 IkkvaViGaG~----------mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~-~~~~~~~~~~~   72 (192)
T d1f0ya2           4 VKHVTVIGGGL----------MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAE-NPKAGDEFVEK   72 (192)
T ss_dssp             CCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSS-CHHHHHHHHHH
T ss_pred             eEEEEEECcCH----------HHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhc-cchhhHHHHHH
Confidence            47999999865          8899999999999999999997653221     11110   000000 00000000000


Q ss_pred             CCCceeeecCHHHhcccccEEEEEeccc-ccccccHHHHHHhcCCCCEEEEcCCCCChHHHh
Q 011654          396 ASKQVNVVWDAYQAAKDAHGVCILTEWD-EFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLR  456 (480)
Q Consensus       396 ~~~~~~~~~~~~~a~~~ad~vvi~t~h~-~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~  456 (480)
                      ...++....+.+++++++|.|+-++.=+ +.|.-=++++.+.+++..++.=....+...++.
T Consensus        73 ~l~~i~~~~d~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la  134 (192)
T d1f0ya2          73 TLSTIATSTDAASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIA  134 (192)
T ss_dssp             HHHTEEEESCHHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHH
T ss_pred             HHhhccccchhHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccccchhh
Confidence            0134677889999999999998865332 223223345555566666777677777765544

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=92.20  E-value=0.034  Score=51.85  Aligned_cols=34  Identities=24%  Similarity=0.373  Sum_probs=28.5

Q ss_pred             EEEEEcCChhHHHHHHHHHHc---CCCCeEEEEeCCH
Q 011654            3 KICCIGAGYVGGPTMAVIALK---CPKIEVAVVDISV   36 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~---~~G~~V~~~D~~~   36 (480)
                      -|.|||+|..|+.+|..|++.   ..|++|+++|+++
T Consensus         9 DV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~   45 (360)
T d1pn0a1           9 DVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRS   45 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCC
Confidence            489999999999999999731   1399999999764

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.15  E-value=0.062  Score=43.57  Aligned_cols=99  Identities=15%  Similarity=0.150  Sum_probs=59.6

Q ss_pred             cEEEEEcCCh----------hHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecC
Q 011654            2 VKICCIGAGY----------VGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTD   71 (480)
Q Consensus         2 mkI~VIGlG~----------~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d   71 (480)
                      .||+|+|+-+          -...++..|..+  |.+|.+||..-+..+..+.        ..+.+.......+....++
T Consensus        14 kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~--g~~V~~~DP~v~~~~~~~~--------~~~~~~~~~~~~~~~~~~~   83 (136)
T d1mv8a3          14 RKVGLLGLSFKAGTDDLRESPLVELAEMLIGK--GYELRIFDRNVEYARVHGA--------NKEYIESKIPHVSSLLVSD   83 (136)
T ss_dssp             CEEEEECCSSSTTCCCCTTCHHHHHHHHHHHT--TCEEEEECHHHHHHTTSSS--------CHHHHHHTSHHHHTTBCSC
T ss_pred             CEEEEEEEEECCCCcchhcCHHHHHHHHHhhh--hccccccCCCCCHHHHhhh--------hhhhhhhccccccceeehh
Confidence            4799999865          477889999888  9999999963221110000        0000000000011235678


Q ss_pred             HHHHhccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC
Q 011654           72 IEKHVAEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV  129 (480)
Q Consensus        72 ~~~a~~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv  129 (480)
                      +.+++.++|+||++++-+            +       ++.+...+.++.+|++.-.+
T Consensus        84 ~~e~i~~~D~ivi~t~h~------------~-------f~~l~~~~~~~~~I~D~~~~  122 (136)
T d1mv8a3          84 LDEVVASSDVLVLGNGDE------------L-------FVDLVNKTPSGKKLVDLVGF  122 (136)
T ss_dssp             HHHHHHHCSEEEECSCCG------------G-------GHHHHHSCCTTCEEEESSSC
T ss_pred             hhhhhhhceEEEEEeCCH------------H-------HHHHHHHhcCCCEEEECCCC
Confidence            999999999999997632            1       12344456677888875433

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.06  E-value=0.068  Score=50.36  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=29.8

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      |||.|.| .|++|..++..|.++  ||+|+++|+.
T Consensus        16 MKILVTGgsGfIGs~lv~~L~~~--g~~V~~~d~~   48 (363)
T d2c5aa1          16 LKISITGAGGFIASHIARRLKHE--GHYVIASDWK   48 (363)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEeCC
Confidence            8999997 799999999999998  9999999974

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.02  E-value=0.075  Score=45.09  Aligned_cols=40  Identities=13%  Similarity=0.113  Sum_probs=34.9

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~   44 (480)
                      .|.|+|+|-+|+...+.+...  | .+|+++|+++++++..++
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~--G~~~Vi~vd~~~~kl~~Ak~   72 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSA--GASRIIGIDLNKDKFEKAMA   72 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCSEEEEECSCGGGHHHHHH
T ss_pred             EEEEECCCchhHHHHHHHHHc--CCceEEEecCcHHHHHHHHh
Confidence            589999999999988888776  6 689999999999987765

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.01  E-value=0.38  Score=44.16  Aligned_cols=140  Identities=13%  Similarity=0.100  Sum_probs=75.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE-EecCHHHHhc---
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF-FSTDIEKHVA---   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~-~t~d~~~a~~---   77 (480)
                      .+|.|||+|--|.  +..+.+..+..+|+++|+|++.++..++- .+       ..-......+++ ...|..+-++   
T Consensus        91 k~VLiiGgG~G~~--~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~-~~-------~~~~~~~d~rv~v~~~Da~~~l~~~~  160 (295)
T d1inla_          91 KKVLIIGGGDGGT--LREVLKHDSVEKAILCEVDGLVIEAARKY-LK-------QTSCGFDDPRAEIVIANGAEYVRKFK  160 (295)
T ss_dssp             CEEEEEECTTCHH--HHHHTTSTTCSEEEEEESCHHHHHHHHHH-CH-------HHHGGGGCTTEEEEESCHHHHGGGCS
T ss_pred             ceEEEecCCchHH--HHHHHhcCCCceEEEecCCHHHHHHHHHH-HH-------hhcccccCCCcEEEhhhHHHHHhcCC
Confidence            4899999998766  44455543356899999999998876641 00       000011234444 3345444443   


Q ss_pred             -cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH---HHHHHHHHhcCCCCceeEe
Q 011654           78 -EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA---EAIEKILTHNSREIKYQIL  153 (480)
Q Consensus        78 -~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~---~~l~~~l~~~~~g~~~~v~  153 (480)
                       .-|+||+-.+.|.....   .....    .+.++.+.+.|+++-+++..+..+.-..   ..+.+.+++.......+..
T Consensus       161 ~~yDvIi~D~~dp~~~~~---~~L~t----~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~~vF~~v~~y~~  233 (295)
T d1inla_         161 NEFDVIIIDSTDPTAGQG---GHLFT----EEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISKVFPITRVYLG  233 (295)
T ss_dssp             SCEEEEEEEC-------------CCS----HHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             CCCCEEEEcCCCCCcCch---hhhcc----HHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHHhhcceeEEEEe
Confidence             46999998876532100   01112    4567778888888888877666543232   3334444444221122334


Q ss_pred             eCCcc
Q 011654          154 SNPEF  158 (480)
Q Consensus       154 ~~Pe~  158 (480)
                      +-|.+
T Consensus       234 ~vPty  238 (295)
T d1inla_         234 FMTTY  238 (295)
T ss_dssp             ECTTS
T ss_pred             eecee
Confidence            45655

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.71  E-value=0.28  Score=40.69  Aligned_cols=77  Identities=17%  Similarity=0.261  Sum_probs=54.4

Q ss_pred             CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCC--ChHHHHH---hhhccccCCCCCCCCCCCCCCC
Q 011654          322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQV--TEDQIQR---DLSMKKFDWDHPIHLQPMSPPA  396 (480)
Q Consensus       322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  396 (480)
                      +++.+|+++|        |+++--+..++..+..-|+++.+.-|..  .......   .+..                ..
T Consensus         1 l~g~ki~~vG--------D~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~----------------~~   56 (161)
T d1vlva2           1 LKGVKVVFMG--------DTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVK----------------ET   56 (161)
T ss_dssp             STTCEEEEES--------CTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHH----------------HH
T ss_pred             CCCCEEEEEc--------CCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHh----------------hc
Confidence            4788999998        6777688889999999999999998842  2221110   0000                00


Q ss_pred             CCceeeecCHHHhcccccEEEEEeccc
Q 011654          397 SKQVNVVWDAYQAAKDAHGVCILTEWD  423 (480)
Q Consensus       397 ~~~~~~~~~~~~a~~~ad~vvi~t~h~  423 (480)
                      ...+.+.+++++|++++|+|.. +.|.
T Consensus        57 ~~~i~~~~d~~~ai~~aDviyt-~~~q   82 (161)
T d1vlva2          57 DGSVSFTSNLEEALAGADVVYT-DVWA   82 (161)
T ss_dssp             CCEEEEESCHHHHHTTCSEEEE-CCCC
T ss_pred             CCceEEEecHHHhhhhhhheec-ccee
Confidence            1357888999999999999987 4553

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=91.71  E-value=0.066  Score=43.14  Aligned_cols=86  Identities=15%  Similarity=0.145  Sum_probs=58.0

Q ss_pred             cEEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIGA----GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      .+|+|||+    |.+|..+..+|.+.+ .++|+.+....+.+                        .+.+...++++.-.
T Consensus         9 ksIAVVGaS~~~~~~g~~v~~~L~~~~-~g~v~pVnP~~~~i------------------------~G~~~y~sl~dlp~   63 (129)
T d2csua1           9 KGIAVIGASNDPKKLGYEVFKNLKEYK-KGKVYPVNIKEEEV------------------------QGVKAYKSVKDIPD   63 (129)
T ss_dssp             SEEEEETCCSCTTSHHHHHHHHHTTCC-SSEEEEECSSCSEE------------------------TTEECBSSTTSCSS
T ss_pred             CeEEEEccCCCCCCcHHHHHHHHHHcC-CCcEEEeccCcccc------------------------CCeEeecchhhcCC
Confidence            47999997    899999999987652 36888887643211                        24667777777445


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                      ..|++++++|.               +.+.+++++..+.-- ..+++..+.
T Consensus        64 ~vDlvvi~vp~---------------~~~~~~~~~~~~~g~-~~~vi~s~G   98 (129)
T d2csua1          64 EIDLAIIVVPK---------------RFVKDTLIQCGEKGV-KGVVIITAG   98 (129)
T ss_dssp             CCSEEEECSCH---------------HHHHHHHHHHHHHTC-CEEEECCCS
T ss_pred             CCceEEEecCh---------------HHhHHHHHHHHHcCC-CEEEEeccc
Confidence            78999999874               235666776665433 345555443

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.29  E-value=0.67  Score=42.30  Aligned_cols=139  Identities=17%  Similarity=0.164  Sum_probs=77.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE-EecCHHHHh----
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF-FSTDIEKHV----   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~-~t~d~~~a~----   76 (480)
                      .+|.|||+|-.|.+  ..+.+..+.-+|+++|+|++.++..++-- +       .........+++ ...|..+-+    
T Consensus        82 k~VLiiGgG~G~~~--r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f-~-------~~~~~~~~~r~~i~~~Da~~~l~~~~  151 (290)
T d1xj5a_          82 KKVLVIGGGDGGVL--REVARHASIEQIDMCEIDKMVVDVSKQFF-P-------DVAIGYEDPRVNLVIGDGVAFLKNAA  151 (290)
T ss_dssp             CEEEEETCSSSHHH--HHHTTCTTCCEEEEEESCHHHHHHHHHHC-H-------HHHGGGGSTTEEEEESCHHHHHHTSC
T ss_pred             cceEEecCCchHHH--HHHHhcccceeeEEecCCHHHHHHHHHhc-h-------hhhccccCCCcEEEEccHHHHHhhcc
Confidence            58999999988874  34555423357999999999988776520 0       000001233443 334433323    


Q ss_pred             -ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHH---HHHHHHHhcCCC-Ccee
Q 011654           77 -AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAE---AIEKILTHNSRE-IKYQ  151 (480)
Q Consensus        77 -~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~---~l~~~l~~~~~g-~~~~  151 (480)
                       +.-|+||+-++.|...       ...+ +-.+.++.+.+.|+++-+++..+..+.-..+   .+.+.+.+.... ..+.
T Consensus       152 ~~~yDvIi~D~~dp~~~-------~~~L-~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~~~~y~  223 (290)
T d1xj5a_         152 EGSYDAVIVDSSDPIGP-------AKEL-FEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCREIFKGSVNYA  223 (290)
T ss_dssp             TTCEEEEEECCCCTTSG-------GGGG-GSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             ccCccEEEEcCCCCCCc-------chhh-CCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhhhcccceeEe
Confidence             2479999988766432       1111 1255678888889888888776654432333   334444444321 1222


Q ss_pred             EeeCCcc
Q 011654          152 ILSNPEF  158 (480)
Q Consensus       152 v~~~Pe~  158 (480)
                      ..+-|.+
T Consensus       224 ~~~vPty  230 (290)
T d1xj5a_         224 WTSVPTY  230 (290)
T ss_dssp             EEECTTS
T ss_pred             eEeeeee
Confidence            3445654

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=91.14  E-value=0.07  Score=47.69  Aligned_cols=34  Identities=26%  Similarity=0.355  Sum_probs=29.2

Q ss_pred             cEEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      |||.+| | .+-+|.++|..|++.  |++|++.|++++
T Consensus         1 mkVvlITGas~GIG~aiA~~la~~--Ga~V~~~~~~~~   36 (257)
T d1fjha_           1 MSIIVISGCATGIGAATRKVLEAA--GHQIVGIDIRDA   36 (257)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSSS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECChH
Confidence            787766 5 578999999999998  999999998753

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=91.11  E-value=0.7  Score=40.74  Aligned_cols=40  Identities=20%  Similarity=0.223  Sum_probs=32.4

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++| | .+.+|..+|..|+++  |++|++.+++.++++...+
T Consensus         6 K~alItGas~GIG~aia~~l~~~--G~~V~~~~r~~~~~~~~~~   47 (241)
T d2a4ka1           6 KTILVTGAASGIGRAALDLFARE--GASLVAVDREERLLAEAVA   47 (241)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            44444 6 466999999999998  9999999999987765543

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=91.11  E-value=0.12  Score=41.97  Aligned_cols=63  Identities=13%  Similarity=-0.069  Sum_probs=47.6

Q ss_pred             cEEEEEcC----ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhc
Q 011654            2 VKICCIGA----GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVA   77 (480)
Q Consensus         2 mkI~VIGl----G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~   77 (480)
                      .+|+|||+    +..|......|.+.  ||+++.+..++..-        .              -.+.....++.+.-.
T Consensus        14 ksIAVVGaS~~~~k~g~~v~~~L~~~--g~~~~~v~~~~~~~--------~--------------i~g~~~~~~l~~i~~   69 (136)
T d1iuka_          14 KTIAVLGAHKDPSRPAHYVPRYLREQ--GYRVLPVNPRFQGE--------E--------------LFGEEAVASLLDLKE   69 (136)
T ss_dssp             CEEEEETCCSSTTSHHHHHHHHHHHT--TCEEEEECGGGTTS--------E--------------ETTEECBSSGGGCCS
T ss_pred             CeEEEEeecCCCCCchHHHHHHHhcC--CCCceEEEeccccc--------e--------------eeceecccchhhccC
Confidence            47999997    78999999999998  99999988754210        0              023566777777445


Q ss_pred             cCcEEEEeccC
Q 011654           78 EADIVFVSVNT   88 (480)
Q Consensus        78 ~aDvVii~Vpt   88 (480)
                      ..|++++|+|.
T Consensus        70 ~iD~v~v~~p~   80 (136)
T d1iuka_          70 PVDILDVFRPP   80 (136)
T ss_dssp             CCSEEEECSCH
T ss_pred             CCceEEEeccH
Confidence            68999999974

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=91.11  E-value=0.13  Score=42.60  Aligned_cols=69  Identities=17%  Similarity=0.164  Sum_probs=51.4

Q ss_pred             CCCEEEEEeeccCCCCCcccCC-hHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCcee
Q 011654          323 SGKKIAILGFAFKKDTGDTRET-PAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVN  401 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~S-p~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (480)
                      ++.+|+++|        |+++| -+..++..|..-|+++.+-.|---.                         .....+.
T Consensus         2 ~gl~i~~vG--------D~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~-------------------------~~~~~~~   48 (151)
T d2at2a2           2 KGLTVSIHG--------DIKHSRVARSNAEVLTRLGARVLFSGPSEWQ-------------------------DEENTFG   48 (151)
T ss_pred             CCCEEEEEc--------CCCCCHHHHHHHHHHHHcCCcccccCCchhh-------------------------cccccee
Confidence            578999997        88886 6678888898899999988884211                         0113466


Q ss_pred             eecCHHHhcccccEEEEEecccc
Q 011654          402 VVWDAYQAAKDAHGVCILTEWDE  424 (480)
Q Consensus       402 ~~~~~~~a~~~ad~vvi~t~h~~  424 (480)
                      +..+++++++++|+|...+-+.+
T Consensus        49 ~~~~~~ea~~~aDviy~~r~q~e   71 (151)
T d2at2a2          49 TYVSMDEAVESSDVVMLLRIQNE   71 (151)
T ss_pred             EEEechhccccCceeeeeEEEEc
Confidence            77899999999998876544444

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=90.99  E-value=0.13  Score=45.86  Aligned_cols=40  Identities=20%  Similarity=0.209  Sum_probs=34.1

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++| | .+-+|..+|..|++.  |++|++.|++++.++.+.+
T Consensus         5 K~alITGas~GIG~a~a~~l~~~--G~~Vv~~~r~~~~l~~~~~   46 (243)
T d1q7ba_           5 KIALVTGASRGIGRAIAETLAAR--GAKVIGTATSENGAQAISD   46 (243)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHHHH
Confidence            56777 5 678999999999998  9999999999988776653

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=90.97  E-value=0.08  Score=47.66  Aligned_cols=33  Identities=21%  Similarity=0.194  Sum_probs=30.4

Q ss_pred             cEEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      +||.|+|+ |++|..++..|.++  ||+|++++|++
T Consensus         4 kKILVtGatG~iG~~l~~~L~~~--G~~V~~l~R~~   37 (307)
T d1qyca_           4 SRILLIGATGYIGRHVAKASLDL--GHPTFLLVRES   37 (307)
T ss_dssp             CCEEEESTTSTTHHHHHHHHHHT--TCCEEEECCCC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEECCC
Confidence            68999995 99999999999998  99999999864

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.88  E-value=0.14  Score=45.82  Aligned_cols=40  Identities=20%  Similarity=0.214  Sum_probs=33.8

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++| | .+-+|..+|..|++.  |++|++.|+++++.+.+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~~   48 (244)
T d1nffa_           7 KVALVSGGARGMGASHVRAMVAE--GAKVVFGDILDEEGKAMAA   48 (244)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            56666 5 577999999999998  9999999999998876653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.14  Score=45.73  Aligned_cols=40  Identities=13%  Similarity=0.184  Sum_probs=33.4

Q ss_pred             EEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      ++-|.| .+-+|.++|..|++.  |++|++.|+++++++.+.+
T Consensus         9 ~~lITGas~GIG~aia~~la~~--G~~V~~~~r~~~~l~~~~~   49 (244)
T d1pr9a_           9 RVLVTGAGKGIGRGTVQALHAT--GARVVAVSRTQADLDSLVR   49 (244)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHc--CCEEEEEECCHHHHHHHHH
Confidence            344555 578999999999998  9999999999998877654

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.85  E-value=0.61  Score=42.46  Aligned_cols=139  Identities=12%  Similarity=0.124  Sum_probs=74.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE-EecCHHHHhc---
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF-FSTDIEKHVA---   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~-~t~d~~~a~~---   77 (480)
                      .+|.|||+|.-|.+  ..+.+..+..+|+++|+|++.++..++--        ..........+++ ...|..+-++   
T Consensus        80 k~vLiiGgG~G~~~--~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~--------~~~~~~~~d~rv~i~~~Da~~~l~~~~  149 (285)
T d2o07a1          80 RKVLIIGGGDGGVL--REVVKHPSVESVVQCEIDEDVIQVSKKFL--------PGMAIGYSSSKLTLHVGDGFEFMKQNQ  149 (285)
T ss_dssp             CEEEEEECTTSHHH--HHHTTCTTCCEEEEEESCHHHHHHHHHHC--------HHHHGGGGCTTEEEEESCHHHHHHTCS
T ss_pred             CeEEEeCCCchHHH--HHHHHcCCcceeeeccCCHHHHHHHHhhc--------hhhccccCCCCceEEEccHHHHHhcCC
Confidence            47999999987764  44555423568999999999988776420        0000011234444 3445444443   


Q ss_pred             -cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCC---ccchHHHHHHHHHhcCCCCceeEe
Q 011654           78 -EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTV---PVKTAEAIEKILTHNSREIKYQIL  153 (480)
Q Consensus        78 -~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv---~~gt~~~l~~~l~~~~~g~~~~v~  153 (480)
                       .-|+||+-++.|...        +..=+-.+.++.+.+.|+++-+++..+..   .+...+.+.+.+++...-...+.+
T Consensus       150 ~~yDvIi~D~~~p~~~--------~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~~F~~v~~y~~  221 (285)
T d2o07a1         150 DAFDVIITDSSDPMGP--------AESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQSLFPVVAYAYC  221 (285)
T ss_dssp             SCEEEEEEECC-------------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             CCCCEEEEcCCCCCCc--------ccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHhcCCeeeEEee
Confidence             459999998765422        11112245677888889888877665533   223333444455554321122234


Q ss_pred             eCCcc
Q 011654          154 SNPEF  158 (480)
Q Consensus       154 ~~Pe~  158 (480)
                      +-|.+
T Consensus       222 ~vP~~  226 (285)
T d2o07a1         222 TIPTY  226 (285)
T ss_dssp             ECTTS
T ss_pred             eeeec
Confidence            45655

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.85  E-value=0.28  Score=41.86  Aligned_cols=83  Identities=17%  Similarity=0.099  Sum_probs=49.8

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCC-CCCCCCCCceeeec
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQ-PMSPPASKQVNVVW  404 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  404 (480)
                      ||+|+|+.|          -.+.++-.| ++|.+|..||..-...+   .+........+|  +. +........+....
T Consensus         2 kI~ViGlG~----------vGl~~a~~~-a~g~~V~g~Din~~~v~---~l~~g~~p~~e~--~l~~~~~~~~~~~~~~~   65 (196)
T d1dlja2           2 KIAVAGSGY----------VGLSLGVLL-SLQNEVTIVDILPSKVD---KINNGLSPIQDE--YIEYYLKSKQLSIKATL   65 (196)
T ss_dssp             EEEEECCSH----------HHHHHHHHH-TTTSEEEEECSCHHHHH---HHHTTCCSSCCH--HHHHHHHHSCCCEEEES
T ss_pred             EEEEECCCh----------hHHHHHHHH-HCCCcEEEEECCHHHHH---HHhhcccccchh--hHHHHhhhhhhhhhccc
Confidence            799999999          778888655 57999999998643221   111000000000  00 00000123445566


Q ss_pred             CHHHhcccccEEEEEecccc
Q 011654          405 DAYQAAKDAHGVCILTEWDE  424 (480)
Q Consensus       405 ~~~~a~~~ad~vvi~t~h~~  424 (480)
                      +...+..++|+++++|+-+.
T Consensus        66 ~~~~~~~~~~ii~v~vpt~~   85 (196)
T d1dlja2          66 DSKAAYKEAELVIIATPTNY   85 (196)
T ss_dssp             CHHHHHHHCSEEEECCCCCE
T ss_pred             hhhhhhhccccccccCCccc
Confidence            77888899999999987764

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=90.82  E-value=1.2  Score=38.20  Aligned_cols=105  Identities=10%  Similarity=0.051  Sum_probs=68.5

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      .+++++||+|-|+.          +-...+++.|.+.|++|.++|+..........++                      
T Consensus        23 ~~L~gk~v~IqG~G----------~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g----------------------   70 (201)
T d1c1da1          23 GSLDGLTVLVQGLG----------AVGGSLASLAAEAGAQLLVADTDTERVAHAVALG----------------------   70 (201)
T ss_dssp             CCSTTCEEEEECCS----------HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTT----------------------
T ss_pred             CCCCCCEEEEECCC----------HHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhc----------------------
Confidence            36899999999973          4678899999999999999998654322222211                      


Q ss_pred             eeeecCHHHhcc-cccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC-CChH----HHhhcCcEE
Q 011654          400 VNVVWDAYQAAK-DAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI-LDVE----KLREIGFIV  462 (480)
Q Consensus       400 ~~~~~~~~~a~~-~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~-~~~~----~~~~~g~~y  462 (480)
                      .+.. +.++.+. ++|+++-+.--..   ++.+. .+.++-. +|+-+-|. +.++    .+++.|+.|
T Consensus        71 ~~~~-~~~~~~~~~~DI~iPcA~~~~---I~~~~-a~~i~ak-~i~e~AN~p~~~~~~~~~L~~rgI~~  133 (201)
T d1c1da1          71 HTAV-ALEDVLSTPCDVFAPCAMGGV---ITTEV-ARTLDCS-VVAGAANNVIADEAASDILHARGILY  133 (201)
T ss_dssp             CEEC-CGGGGGGCCCSEEEECSCSCC---BCHHH-HHHCCCS-EECCSCTTCBCSHHHHHHHHHTTCEE
T ss_pred             cccc-Cccccccccceeeeccccccc---ccHHH-Hhhhhhh-eeeccCCCCcchhhHHHHhcccceEE
Confidence            1222 3444444 7898876544343   55444 3455654 89999984 3332    456678876

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.81  E-value=0.18  Score=43.43  Aligned_cols=41  Identities=29%  Similarity=0.283  Sum_probs=33.0

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      +|.|+|+|.+|+..+..+... .+.+|++.|.++++++..++
T Consensus        28 tVlV~GaG~vGl~a~~~ak~~-ga~~Vi~~d~~~~rl~~a~~   68 (195)
T d1kola2          28 TVYVAGAGPVGLAAAASARLL-GAAVVIVGDLNPARLAHAKA   68 (195)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHH
T ss_pred             EEEEECcCHHHHHHHHHHHhh-cccceeeecccchhhHhhhh
Confidence            689999999998766665554 24589999999999988775

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=90.80  E-value=0.4  Score=40.72  Aligned_cols=82  Identities=16%  Similarity=0.125  Sum_probs=55.5

Q ss_pred             CcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCC--hHHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          320 NTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVT--EDQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       320 ~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      |++++.+|+++|        |.+|.-+..++..+..-|+++++.-|-.-  .+..........             ...-
T Consensus         1 k~l~~lkia~vG--------D~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~-------------~~~~   59 (185)
T d1dxha2           1 KPLHDISYAYLG--------DARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFA-------------EESG   59 (185)
T ss_dssp             SCGGGCEEEEES--------CCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHH-------------HHHT
T ss_pred             CCCCCCEEEEEc--------CCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHh-------------hccC
Confidence            357889999998        67778899999999999999999998421  111111000000             0001


Q ss_pred             CceeeecCHHHhcccccEEEEEeccc
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWD  423 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~  423 (480)
                      ..+++.++++++++++|+|.. +-|.
T Consensus        60 ~~~~~~~d~~eai~~aDvVyt-~~w~   84 (185)
T d1dxha2          60 AKLTLTEDPKEAVKGVDFVHT-DVWV   84 (185)
T ss_dssp             CEEEEESCHHHHTTTCSEEEE-CCCS
T ss_pred             CeEEEEeChhhccccccEEEe-ehhh
Confidence            356788999999999998665 5563

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=90.77  E-value=0.33  Score=44.95  Aligned_cols=112  Identities=13%  Similarity=0.119  Sum_probs=65.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHH-hhcCCCEE-EecCHHHHh---
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVT-QCRGRNLF-FSTDIEKHV---   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~-~~~~~~l~-~t~d~~~a~---   76 (480)
                      .+|.|||+|.-|.+  ..+.+..+..+|+++++|++.++..++--        ..... .....+++ ...|..+-+   
T Consensus        79 k~VLiiG~G~G~~~--~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f--------~~~~~~~~~d~rv~i~~~Da~~~l~~~  148 (312)
T d1uira_          79 KRVLIVGGGEGATL--REVLKHPTVEKAVMVDIDGELVEVAKRHM--------PEWHQGAFDDPRAVLVIDDARAYLERT  148 (312)
T ss_dssp             CEEEEEECTTSHHH--HHHTTSTTCCEEEEEESCHHHHHHHHHHC--------HHHHTTGGGCTTEEEEESCHHHHHHHC
T ss_pred             ceEEEeCCCchHHH--HHHHhcCCcceEEEecCCHHHHHHHHhcC--------cccccCccCCCceEEEEchHHHHhhhc
Confidence            48999999976553  33444433568999999999988665420        00000 01123444 345554433   


Q ss_pred             -ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecC
Q 011654           77 -AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKST  128 (480)
Q Consensus        77 -~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~ST  128 (480)
                       ..-|+||+-++.|...++    ....+ +-++.++.+.+.|+++-+++..++
T Consensus       149 ~~~yDvIi~D~~dp~~~~~----~~~~L-~t~eF~~~~~~~L~p~Gvlv~~~~  196 (312)
T d1uira_         149 EERYDVVIIDLTDPVGEDN----PARLL-YTVEFYRLVKAHLNPGGVMGMQTG  196 (312)
T ss_dssp             CCCEEEEEEECCCCBSTTC----GGGGG-SSHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCcccEEEEeCCCcccccc----hhhhh-hhHHHHHHHHHhcCCCceEEEecC
Confidence             357999998876643211    00011 114567788888998887765543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=90.75  E-value=0.15  Score=46.39  Aligned_cols=40  Identities=28%  Similarity=0.331  Sum_probs=33.6

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++| | .+-+|..+|..|++.  |++|++.|+++++++.+.+
T Consensus         6 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~l~~~~~   47 (276)
T d1bdba_           6 EAVLITGGASGLGRALVDRFVAE--GAKVAVLDKSAERLAELET   47 (276)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            45555 5 589999999999999  9999999999988776553

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.73  E-value=0.075  Score=43.99  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=27.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      .||.|||.|+.|.-+|..|++   +.+|+++++.
T Consensus         1 ~rVvIIGgG~~G~e~A~~l~~---~~~Vtvv~~~   31 (167)
T d1xhca1           1 SKVVIVGNGPGGFELAKQLSQ---TYEVTVIDKE   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT---TSEEEEECSS
T ss_pred             CeEEEECCcHHHHHHHHHHHc---CCCEEEEecc
Confidence            489999999999999999865   6799999864

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=90.73  E-value=0.52  Score=42.68  Aligned_cols=139  Identities=17%  Similarity=0.159  Sum_probs=77.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE-EecCHHHHh----
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF-FSTDIEKHV----   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~-~t~d~~~a~----   76 (480)
                      .+|.|||+|.-+.+  ..+.+..+..+|+++|+|++.++..++-- +       .........+++ ...|..+-+    
T Consensus        77 ~~vLiiGgG~G~~~--~~~l~~~~~~~i~~VEID~~Vi~~a~~~~-~-------~~~~~~~d~r~~i~~~D~~~~l~~~~  146 (274)
T d1iy9a_          77 EHVLVVGGGDGGVI--REILKHPSVKKATLVDIDGKVIEYSKKFL-P-------SIAGKLDDPRVDVQVDDGFMHIAKSE  146 (274)
T ss_dssp             CEEEEESCTTCHHH--HHHTTCTTCSEEEEEESCHHHHHHHHHHC-H-------HHHTTTTSTTEEEEESCSHHHHHTCC
T ss_pred             ceEEecCCCCcHHH--HHHHhcCCcceEEEecCCHHHHHHHHHhC-h-------hhcccccCCCeEEEechHHHHHhhcC
Confidence            47999999987763  44444323468999999999988766421 0       000001123443 234433323    


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH---HHHHHHHHhcCCCCceeEe
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA---EAIEKILTHNSREIKYQIL  153 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~---~~l~~~l~~~~~g~~~~v~  153 (480)
                      +.-|+|++-.+.|...       ...+ +-++..+.+.+.|+++-+++..+..+....   ..+.+.+++.......+..
T Consensus       147 ~~yDvIi~D~~~p~~~-------~~~L-~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~~F~~v~~y~~  218 (274)
T d1iy9a_         147 NQYDVIMVDSTEPVGP-------AVNL-FTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEIFPITKLYTA  218 (274)
T ss_dssp             SCEEEEEESCSSCCSC-------CCCC-STTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTTCSEEEEEEE
T ss_pred             CCCCEEEEcCCCCCCc-------chhh-ccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhhhcCceEEEEE
Confidence            3469999998766432       1111 114567778888888888876665443333   3344445443221122344


Q ss_pred             eCCcc
Q 011654          154 SNPEF  158 (480)
Q Consensus       154 ~~Pe~  158 (480)
                      +-|.+
T Consensus       219 ~vPsy  223 (274)
T d1iy9a_         219 NIPTY  223 (274)
T ss_dssp             CCTTS
T ss_pred             Eeeec
Confidence            55655

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.59  E-value=0.15  Score=46.05  Aligned_cols=40  Identities=18%  Similarity=0.253  Sum_probs=34.9

Q ss_pred             EEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI--GAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++|  |.+-+|.++|..|++.  |++|++.|+++++++.+.+
T Consensus         6 KvalVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~   47 (264)
T d1spxa_           6 KVAIITGSSNGIGRATAVLFARE--GAKVTITGRHAERLEETRQ   47 (264)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            67777  5789999999999998  9999999999988876653

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.55  E-value=0.16  Score=45.64  Aligned_cols=40  Identities=18%  Similarity=0.192  Sum_probs=33.5

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++| | .+-+|.++|..|++.  |++|++.|+++++++.+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~   48 (250)
T d1ydea1           7 KVVVVTGGGRGIGAGIVRAFVNS--GARVVICDKDESGGRALEQ   48 (250)
T ss_dssp             CEEEEETCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            45544 5 588999999999998  9999999999998877654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=90.53  E-value=0.086  Score=47.10  Aligned_cols=33  Identities=30%  Similarity=0.184  Sum_probs=30.4

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      .|.|||.|..|+..|..|+++  |++|+++|+++.
T Consensus         6 DViIIGaG~aGl~aA~~la~~--G~~V~vlEk~~~   38 (253)
T d2gqfa1           6 ENIIIGAGAAGLFCAAQLAKL--GKSVTVFDNGKK   38 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT--TCCEEEECSSSS
T ss_pred             cEEEECcCHHHHHHHHHHHHC--CCcEEEEecCCC
Confidence            489999999999999999998  999999999764

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=90.43  E-value=0.18  Score=45.35  Aligned_cols=40  Identities=25%  Similarity=0.255  Sum_probs=33.8

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++| | .+-+|..+|..|++.  |++|++.|+++++++.+.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~   47 (256)
T d1k2wa_           6 KTALITGSARGIGRAFAEAYVRE--GARVAIADINLEAARATAA   47 (256)
T ss_dssp             EEEEEETCSSHHHHHHHHHHHHT--TEEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            66666 5 588999999999998  9999999999988776553

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=90.41  E-value=0.62  Score=38.16  Aligned_cols=80  Identities=16%  Similarity=0.193  Sum_probs=55.5

Q ss_pred             CCCCEEEEEeeccCCCCCcccCCh-HHHHHHHHHhCCCEEEEECCCCCh--HHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          322 VSGKKIAILGFAFKKDTGDTRETP-AIDVCKGLLGDKAKLSIYDPQVTE--DQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       322 ~~~~~v~ilGla~K~~~~d~r~Sp-~~~l~~~L~~~g~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      +++.+|+++|        |+++|- +..++..|..-|+++.+.-|..-.  +.......                 ....
T Consensus         2 l~gl~i~~vG--------D~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~-----------------~~~~   56 (157)
T d1ml4a2           2 IDGLKIGLLG--------DLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELR-----------------EKGM   56 (157)
T ss_dssp             SSSEEEEEES--------CTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHH-----------------HTTC
T ss_pred             cCCCEEEEEc--------CCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHH-----------------hhcc
Confidence            5788999997        888775 578999999999999998885321  11111110                 0123


Q ss_pred             ceeeecCHHHhcccccEEEEEeccccccc
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWDEFKT  427 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~~~~~  427 (480)
                      .+.+.++++++++++|+|.. +.|...+.
T Consensus        57 ~~~~~~d~~~av~~aDvvy~-~~~~~~~~   84 (157)
T d1ml4a2          57 KVVETTTLEDVIGKLDVLYV-TRIQKERF   84 (157)
T ss_dssp             CEEEESCTHHHHTTCSEEEE-CCCCGGGS
T ss_pred             cceeecCHHHhhccCcEEEe-eccccccc
Confidence            46678899999999997665 56655443

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=90.35  E-value=0.16  Score=41.04  Aligned_cols=107  Identities=17%  Similarity=0.170  Sum_probs=71.3

Q ss_pred             CCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          323 SGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       323 ~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      +.++|||+|+|-+      .++++..+.+.|.+.|+.+..+-|....+++.                         +...
T Consensus        12 ~pksIAVVGaS~~------~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~i~-------------------------g~~~   60 (136)
T d1iuka_          12 QAKTIAVLGAHKD------PSRPAHYVPRYLREQGYRVLPVNPRFQGEELF-------------------------GEEA   60 (136)
T ss_dssp             HCCEEEEETCCSS------TTSHHHHHHHHHHHTTCEEEEECGGGTTSEET-------------------------TEEC
T ss_pred             CCCeEEEEeecCC------CCCchHHHHHHHhcCCCCceEEEeccccceee-------------------------ceec
Confidence            4679999998654      46899999999999999999999865433221                         2344


Q ss_pred             ecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH---HHhhcCcEEE
Q 011654          403 VWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE---KLREIGFIVY  463 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~---~~~~~g~~y~  463 (480)
                      ..++.+.-...|.+++.++-..-.+ -.++..+. ... .++=..+..+++   .+++.|+.+.
T Consensus        61 ~~~l~~i~~~iD~v~v~~p~~~v~~-~v~~~~~~-g~k-~i~~q~G~~~~e~~~~a~~~Gi~vV  121 (136)
T d1iuka_          61 VASLLDLKEPVDILDVFRPPSALMD-HLPEVLAL-RPG-LVWLQSGIRHPEFEKALKEAGIPVV  121 (136)
T ss_dssp             BSSGGGCCSCCSEEEECSCHHHHTT-THHHHHHH-CCS-CEEECTTCCCHHHHHHHHHTTCCEE
T ss_pred             ccchhhccCCCceEEEeccHHHHHH-HHHHHHhh-CCC-eEEEecCccCHHHHHHHHHcCCEEE
Confidence            4566665566899999987544333 22333333 333 444567777764   3456788764

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=90.23  E-value=0.31  Score=39.81  Aligned_cols=94  Identities=16%  Similarity=0.187  Sum_probs=61.6

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCC-CEEEEECCCCChHHH-HHhhhccccCCCCCCCCCCCCCCCCCceeee
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDK-AKLSIYDPQVTEDQI-QRDLSMKKFDWDHPIHLQPMSPPASKQVNVV  403 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g-~~V~~~DP~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (480)
                      +|+++|..          ..+..+++.|.+.| .+|.+||+.-+.-+. .+++                      ++...
T Consensus         2 kI~fIG~G----------~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~----------------------~~~~~   49 (152)
T d1yqga2           2 NVYFLGGG----------NMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL----------------------GVETS   49 (152)
T ss_dssp             EEEEECCS----------HHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT----------------------CCEEE
T ss_pred             EEEEEcCc----------HHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc----------------------ccccc
Confidence            68999974          48889999888776 999999997543222 2222                      24455


Q ss_pred             cCHHHhcccccEEEEEecccccccccHHHHHHhcC-CCCEEEEcCCCCChHHHhh
Q 011654          404 WDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMR-KPAYIFDGRNILDVEKLRE  457 (480)
Q Consensus       404 ~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~-~~~~i~D~~~~~~~~~~~~  457 (480)
                      ++.+ +++++|+|++++.-..+.     .+.+.++ ...+|+..-.=...+.+++
T Consensus        50 ~~~~-~v~~~Div~lavkP~~~~-----~v~~~l~~~~~~viS~~ag~~~~~l~~   98 (152)
T d1yqga2          50 ATLP-ELHSDDVLILAVKPQDME-----AACKNIRTNGALVLSVAAGLSVGTLSR   98 (152)
T ss_dssp             SSCC-CCCTTSEEEECSCHHHHH-----HHHTTCCCTTCEEEECCTTCCHHHHHH
T ss_pred             cccc-cccccceEEEecCHHHHH-----HhHHHHhhcccEEeecccCCCHHHHHH
Confidence            5554 478899999998743333     3333332 2358888877777666654

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=90.18  E-value=0.61  Score=39.26  Aligned_cols=111  Identities=15%  Similarity=0.135  Sum_probs=63.5

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-ecCHHHHh---cc
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-STDIEKHV---AE   78 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t~d~~~a~---~~   78 (480)
                      +|.=||||.-+.+++  +++.  +.+|+++|++++.++..++..           -......++++ ..|..+..   ..
T Consensus        36 ~VLDiGcGsG~~s~~--lA~~--~~~V~avD~~~~~l~~a~~n~-----------~~~gl~~~v~~~~gda~~~~~~~~~  100 (186)
T d1l3ia_          36 VAVDVGCGTGGVTLE--LAGR--VRRVYAIDRNPEAISTTEMNL-----------QRHGLGDNVTLMEGDAPEALCKIPD  100 (186)
T ss_dssp             EEEEESCTTSHHHHH--HHTT--SSEEEEEESCHHHHHHHHHHH-----------HHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred             EEEEEECCeEccccc--cccc--ceEEEEecCCHHHHHHHHHHH-----------HHcCCCcceEEEECchhhcccccCC
Confidence            344478887766554  5665  679999999999888776520           00001124433 34544432   56


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      .|.|++.-+.            .   .+...++.+...++++..++.. .....+...+.+.+++.
T Consensus       101 ~D~v~~~~~~------------~---~~~~~~~~~~~~LkpgG~lvi~-~~~~e~~~~~~~~l~~~  150 (186)
T d1l3ia_         101 IDIAVVGGSG------------G---ELQEILRIIKDKLKPGGRIIVT-AILLETKFEAMECLRDL  150 (186)
T ss_dssp             EEEEEESCCT------------T---CHHHHHHHHHHTEEEEEEEEEE-ECBHHHHHHHHHHHHHT
T ss_pred             cCEEEEeCcc------------c---cchHHHHHHHHHhCcCCEEEEE-eeccccHHHHHHHHHHc
Confidence            7888865321            1   1356778888888887655432 22233333444555554

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.13  E-value=0.36  Score=40.10  Aligned_cols=40  Identities=20%  Similarity=0.179  Sum_probs=32.8

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCC-CeEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPK-IEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G-~~V~~~D~~~~~v~~l~~   44 (480)
                      +|.|+|+|-+|...++.+...  | ..|++.|+++++.+..++
T Consensus        31 tVlI~GaGGvG~~aiq~ak~~--G~~~vi~~~~~~~k~~~ak~   71 (176)
T d2fzwa2          31 VCAVFGLGGVGLAVIMGCKVA--GASRIIGVDINKDKFARAKE   71 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH--TCSEEEEECSCGGGHHHHHH
T ss_pred             EEEEecchhHHHHHHHHHHHH--hcCceEEEcccHHHHHHHHH
Confidence            689999999998777766666  5 578899999998887765

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.12  E-value=0.1  Score=46.61  Aligned_cols=39  Identities=21%  Similarity=0.164  Sum_probs=32.3

Q ss_pred             EEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHH
Q 011654            3 KICCI--GAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWN   43 (480)
Q Consensus         3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~   43 (480)
                      |+++|  |.+-+|..+|..|++.  |++|++.|++++..+.+.
T Consensus         6 KvalITGas~GIG~aia~~la~~--G~~V~~~~r~~~~~~~~~   46 (248)
T d2o23a1           6 LVAVITGGASGLGLATAERLVGQ--GASAVLLDLPNSGGEAQA   46 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECTTSSHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCChHHHHHHH
Confidence            56666  4678999999999999  999999999987665544

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=90.07  E-value=0.18  Score=45.76  Aligned_cols=40  Identities=23%  Similarity=0.274  Sum_probs=33.9

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++| | .+-+|..+|..|++.  |++|++.|+++++++.+.+
T Consensus         6 K~alVTGas~GIG~aia~~la~~--Ga~V~l~~r~~~~l~~~~~   47 (272)
T d1xkqa_           6 KTVIITGSSNGIGRTTAILFAQE--GANVTITGRSSERLEETRQ   47 (272)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCcCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            56666 4 688999999999998  9999999999988776653

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=90.05  E-value=0.94  Score=38.22  Aligned_cols=117  Identities=11%  Similarity=0.028  Sum_probs=66.9

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCC-CCCCCCCCCC-
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIH-LQPMSPPASK-  398 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-  398 (480)
                      .+...+|.|+|..-          -.+.=++.-.+-|+.|.+||-.....+..+.+.....+...... ..+...+... 
T Consensus        26 ~V~pa~VvViGaGv----------aG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~   95 (183)
T d1l7da1          26 TVPPARVLVFGVGV----------AGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKE   95 (183)
T ss_dssp             EECCCEEEEECCSH----------HHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------
T ss_pred             CcCCcEEEEEcCcH----------HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhh
Confidence            45678999999643          55666677778899999999887754433333210000000000 0000000000 


Q ss_pred             ---c--eeeecCHHHhcccccEEEEEeccccccc--ccHHHHHHhcCCCCEEEEcC
Q 011654          399 ---Q--VNVVWDAYQAAKDAHGVCILTEWDEFKT--LDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       399 ---~--~~~~~~~~~a~~~ad~vvi~t~h~~~~~--~~~~~~~~~~~~~~~i~D~~  447 (480)
                         .  ....+.+.+.++++|.||-..-.|-=+.  +=-++..+.|++..+|||..
T Consensus        96 ~s~~~~~~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva  151 (183)
T d1l7da1          96 MGEEFRKKQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA  151 (183)
T ss_dssp             ------CCHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence               0  0011234567889999998877775443  22367789999999999973

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=90.02  E-value=0.18  Score=45.62  Aligned_cols=40  Identities=25%  Similarity=0.295  Sum_probs=33.7

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++| | .+-+|..+|..|++.  |++|++.|+++++.+.+.+
T Consensus         7 KvalITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~~~   48 (268)
T d2bgka1           7 KVAIITGGAGGIGETTAKLFVRY--GAKVVIADIADDHGQKVCN   48 (268)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            56666 4 678999999999998  9999999999998776653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.01  E-value=0.13  Score=45.90  Aligned_cols=42  Identities=12%  Similarity=0.303  Sum_probs=33.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHCC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNGD   45 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~~   45 (480)
                      .||.|||+|.+|+.+|..|++.  |. +++++|.|.=....|++.
T Consensus        31 ~~VliiG~GglGs~va~~La~~--Gvg~i~lvD~D~Ve~sNL~RQ   73 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASA--GVGNLTLLDFDTVSLSNLQRQ   73 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHH--TCSEEEEECCCBCCGGGGGTC
T ss_pred             CCEEEECCCHHHHHHHHHHHHc--CCCeEEEECCcccchhhhhhh
Confidence            3799999999999999999998  65 789999765444445543

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=90.00  E-value=0.13  Score=48.94  Aligned_cols=33  Identities=36%  Similarity=0.530  Sum_probs=29.7

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      |||.|.| .|++|..++..|.++  ||+|+++|--.
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~--g~~V~~iDnl~   35 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKK--NYEVCIVDNLV   35 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC--cCEEEEEecCC
Confidence            8999997 699999999999998  99999999433

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=89.94  E-value=0.33  Score=43.26  Aligned_cols=30  Identities=23%  Similarity=0.183  Sum_probs=27.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEe
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVD   33 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D   33 (480)
                      .+|+|-|.|.||..+|..|.+.  |..|++++
T Consensus        32 ~~v~IqGfGnVG~~~a~~L~~~--Gakvv~vs   61 (242)
T d1v9la1          32 KTVAIQGMGNVGRWTAYWLEKM--GAKVIAVS   61 (242)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTT--TCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCeEEEee
Confidence            4799999999999999999988  89998766

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=89.88  E-value=0.17  Score=45.40  Aligned_cols=40  Identities=23%  Similarity=0.229  Sum_probs=33.9

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++| | .+-+|.++|..|++.  |++|++.|+++++++.+.+
T Consensus         7 K~alITGas~GIG~aia~~la~~--Ga~V~~~~~~~~~~~~~~~   48 (253)
T d1hxha_           7 KVALVTGGASGVGLEVVKLLLGE--GAKVAFSDINEAAGQQLAA   48 (253)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            56666 5 577999999999998  9999999999988876653

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=89.87  E-value=0.065  Score=44.06  Aligned_cols=94  Identities=9%  Similarity=0.011  Sum_probs=56.9

Q ss_pred             EEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCceeeecCH
Q 011654          327 IAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVNVVWDA  406 (480)
Q Consensus       327 v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (480)
                      |+++|+.-          .+..+++.|.+.+..+.+|+-.....+...+..                     . ....+.
T Consensus         2 IgfIG~G~----------mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~---------------------~-~~~~~~   49 (153)
T d2i76a2           2 LNFVGTGT----------LTRFFLECLKDRYEIGYILSRSIDRARNLAEVY---------------------G-GKAATL   49 (153)
T ss_dssp             CEEESCCH----------HHHHHHHTTC----CCCEECSSHHHHHHHHHHT---------------------C-CCCCSS
T ss_pred             EEEEeCcH----------HHHHHHHHHHhCCCEEEEEeCChhhhcchhhcc---------------------c-ccccch
Confidence            56777643          788899888665554578886544322222211                     1 123467


Q ss_pred             HHhcccccEEEEEecccccccccHHHHHHhcC-CCCEEEEcCCCCChHHHhh
Q 011654          407 YQAAKDAHGVCILTEWDEFKTLDYQKIFDNMR-KPAYIFDGRNILDVEKLRE  457 (480)
Q Consensus       407 ~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~-~~~~i~D~~~~~~~~~~~~  457 (480)
                      .++++.+|+|+++++.+.+.     .+.+.+. +..+|+|+.+..+.+.++.
T Consensus        50 ~~~~~~~DiVil~v~d~~i~-----~v~~~l~~~~~ivi~~s~~~~~~~l~~   96 (153)
T d2i76a2          50 EKHPELNGVVFVIVPDRYIK-----TVANHLNLGDAVLVHCSGFLSSEIFKK   96 (153)
T ss_dssp             CCCCC---CEEECSCTTTHH-----HHHTTTCCSSCCEEECCSSSCGGGGCS
T ss_pred             hhhhccCcEEEEeccchhhh-----HHHhhhcccceeeeecccchhhhhhhh
Confidence            78899999999999876543     4555554 4568999999888766654

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.72  E-value=0.21  Score=44.49  Aligned_cols=40  Identities=23%  Similarity=0.265  Sum_probs=33.7

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++| | .+-+|..+|..|++.  |++|++.|+++++++.+.+
T Consensus         6 K~~lITGas~GIG~aia~~l~~~--G~~V~~~~r~~~~l~~~~~   47 (242)
T d1ulsa_           6 KAVLITGAAHGIGRATLELFAKE--GARLVACDIEEGPLREAAE   47 (242)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            55555 5 577999999999998  9999999999988877654

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.71  E-value=0.34  Score=38.46  Aligned_cols=109  Identities=14%  Similarity=0.064  Sum_probs=64.8

Q ss_pred             EEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHH-HhhhccccCCCCCCCCCCCCCCCCCceeeec
Q 011654          326 KIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQ-RDLSMKKFDWDHPIHLQPMSPPASKQVNVVW  404 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  404 (480)
                      +|.|+|.+.          -+..+++.|.+.|.+|.+-|..-..-+.. ..++. ..              ...+..-.+
T Consensus         2 ~IvI~G~G~----------~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~-~v--------------i~Gd~~~~~   56 (132)
T d1lssa_           2 YIIIAGIGR----------VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDA-LV--------------INGDCTKIK   56 (132)
T ss_dssp             EEEEECCSH----------HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSS-EE--------------EESCTTSHH
T ss_pred             EEEEECCCH----------HHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhh-hh--------------ccCcccchh
Confidence            789999865          78999999999999999998853321111 11110 00              000011112


Q ss_pred             CHHHh-cccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChHHHhhcCc
Q 011654          405 DAYQA-AKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVEKLREIGF  460 (480)
Q Consensus       405 ~~~~a-~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~g~  460 (480)
                      .+.++ ++.+|+++.+|+.++- ++-...+...+..+.+|.=..+--..+.++..|.
T Consensus        57 ~l~~~~i~~a~~vv~~t~~d~~-N~~~~~~~k~~~~~~iI~~~~~~~~~~~l~~~G~  112 (132)
T d1lssa_          57 TLEDAGIEDADMYIAVTGKEEV-NLMSSLLAKSYGINKTIARISEIEYKDVFERLGV  112 (132)
T ss_dssp             HHHHTTTTTCSEEEECCSCHHH-HHHHHHHHHHTTCCCEEEECSSTTHHHHHHHTTC
T ss_pred             hhhhcChhhhhhhcccCCcHHH-HHHHHHHHHHcCCceEEEEecCHHHHHHHHHCCC
Confidence            33333 6789999999988863 2333455556666666655555444455666665

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.64  E-value=0.2  Score=45.46  Aligned_cols=40  Identities=15%  Similarity=0.209  Sum_probs=33.5

Q ss_pred             EEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI--GAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++|  |.+-+|.++|..|++.  |++|++.|+++++++.+.+
T Consensus         5 K~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~   46 (274)
T d1xhla_           5 KSVIITGSSNGIGRSAAVIFAKE--GAQVTITGRNEDRLEETKQ   46 (274)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            45666  4678999999999998  9999999999988776553

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=89.61  E-value=0.98  Score=40.16  Aligned_cols=39  Identities=10%  Similarity=0.206  Sum_probs=31.6

Q ss_pred             EEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCC-HHHHHHHH
Q 011654            3 KICCI--GAGYVGGPTMAVIALKCPKIEVAVVDIS-VSRIAAWN   43 (480)
Q Consensus         3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~-~~~v~~l~   43 (480)
                      |+++|  |.+-+|..+|..|++.  |++|++.+++ ++..+.+.
T Consensus         5 K~alITGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~~~~~~~   46 (260)
T d1x1ta1           5 KVAVVTGSTSGIGLGIATALAAQ--GADIVLNGFGDAAEIEKVR   46 (260)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHT--TCEEEEECCSCHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHH
Confidence            67777  5677999999999998  9999999996 45555544

>d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=89.55  E-value=0.092  Score=49.14  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=26.9

Q ss_pred             CcEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            1 MVKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         1 imkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      ||||-|.| .|.+|..++..|.++  |++|.++.+
T Consensus         2 ~mkILVTGgtGfIGs~lv~~L~~~--g~~v~v~~~   34 (346)
T d1oc2a_           2 FKNIIVTGGAGFIGSNFVHYVYNN--HPDVHVTVL   34 (346)
T ss_dssp             CSEEEEETTTSHHHHHHHHHHHHH--CTTCEEEEE
T ss_pred             cCEEEEeCCCcHHHHHHHHHHHHC--CCCeEEEEE
Confidence            89999998 799999999999998  776554443

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.42  E-value=0.075  Score=46.95  Aligned_cols=74  Identities=15%  Similarity=0.173  Sum_probs=45.4

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCC--CeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhcc
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPK--IEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAE   78 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G--~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~   78 (480)
                      +||.|.| .|++|..+...|.++  |  ++|++++|++.....          +.... +.. ....+.-..++.+++.+
T Consensus        15 k~IlItGaTG~iG~~l~~~Ll~~--g~~~~v~~~~R~~~~~~~----------~~~~~-i~~-~~~D~~~~~~~~~~~~~   80 (232)
T d2bkaa1          15 KSVFILGASGETGRVLLKEILEQ--GLFSKVTLIGRRKLTFDE----------EAYKN-VNQ-EVVDFEKLDDYASAFQG   80 (232)
T ss_dssp             CEEEEECTTSHHHHHHHHHHHHH--TCCSEEEEEESSCCCCCS----------GGGGG-CEE-EECCGGGGGGGGGGGSS
T ss_pred             CEEEEECCCcHHHHHHHHHHHhC--CCCCEEEEEecChhhhcc----------cccce-eee-eeecccccccccccccc
Confidence            4799998 699999999999988  5  589999986532110          00000 000 00001111245556789


Q ss_pred             CcEEEEeccCC
Q 011654           79 ADIVFVSVNTP   89 (480)
Q Consensus        79 aDvVii~Vptp   89 (480)
                      +|++|.|+.+.
T Consensus        81 ~d~vi~~~~~~   91 (232)
T d2bkaa1          81 HDVGFCCLGTT   91 (232)
T ss_dssp             CSEEEECCCCC
T ss_pred             ccccccccccc
Confidence            99999998653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=89.37  E-value=0.17  Score=47.06  Aligned_cols=34  Identities=15%  Similarity=0.231  Sum_probs=31.1

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      +||-|.| .|++|..++..|.++  |++|+++|+++.
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~--g~~V~~~~r~~~   43 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTM--GATVKGYSLTAP   43 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC--CCEEEEEECCCC
Confidence            6899998 799999999999998  999999999754

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=89.30  E-value=0.12  Score=46.82  Aligned_cols=34  Identities=32%  Similarity=0.555  Sum_probs=29.5

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      .|.|||.|.-|+..|..|+++ +|++|+++|..+.
T Consensus        35 DViVIGaGpaGL~aA~~LA~~-~G~~V~vlE~~~~   68 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVS   68 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHc-cCCeEEEEecCCC
Confidence            389999999999999999863 3999999998653

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=89.29  E-value=0.17  Score=41.62  Aligned_cols=33  Identities=12%  Similarity=0.087  Sum_probs=28.3

Q ss_pred             EEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011654            4 ICCI--GAGYVGGPTMAVIALKCPKIEVAVVDISVSR   38 (480)
Q Consensus         4 I~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~   38 (480)
                      +.|+  |.|++|+.+|..|++.  |++|+++.+.+.-
T Consensus        42 vvi~d~ggg~ig~e~A~~la~~--G~~Vtlv~~~~~~   76 (156)
T d1djqa2          42 VVILNADTYFMAPSLAEKLATA--GHEVTIVSGVHLA   76 (156)
T ss_dssp             EEEEECCCSSHHHHHHHHHHHT--TCEEEEEESSCTT
T ss_pred             eEEEecCCChHHHHHHHHHHHc--CCeEEEEecCCcc
Confidence            4444  9999999999999998  9999999987543

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=89.23  E-value=0.74  Score=42.44  Aligned_cols=139  Identities=13%  Similarity=0.099  Sum_probs=74.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-ecCHHHHh----
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-STDIEKHV----   76 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t~d~~~a~----   76 (480)
                      .+|.|||+|.-|.+  ..+.+..+.-+|+++++|++.++..++-- +.....+       ...+++. ..|..+.+    
T Consensus       108 k~VLIiGgG~G~~~--rellk~~~v~~v~~VEID~~Vv~~a~~~~-~~~~~~~-------~dprv~i~i~Da~~~l~~~~  177 (312)
T d2b2ca1         108 KRVLIIGGGDGGIL--REVLKHESVEKVTMCEIDEMVIDVAKKFL-PGMSCGF-------SHPKLDLFCGDGFEFLKNHK  177 (312)
T ss_dssp             CEEEEESCTTSHHH--HHHTTCTTCCEEEEECSCHHHHHHHHHHC-TTTSGGG-------GCTTEEEECSCHHHHHHHCT
T ss_pred             CeEEEeCCCchHHH--HHHHHcCCcceEEEEcccHHHHHHHHhhc-hhhcccc-------CCCCeEEEEchHHHHHHhCC
Confidence            57999999987774  44555422358999999999988776521 1100001       1234443 34544433    


Q ss_pred             ccCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchH---HHHHHHHHhcCCCCceeEe
Q 011654           77 AEADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTA---EAIEKILTHNSREIKYQIL  153 (480)
Q Consensus        77 ~~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~---~~l~~~l~~~~~g~~~~v~  153 (480)
                      +..|+||+-++.|...       ... =+-++.++.+.+.|+++-+++..+..+.-..   ..+.+.+++......++..
T Consensus       178 ~~yDvII~D~~dp~~~-------~~~-L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~vF~~v~~y~~  249 (312)
T d2b2ca1         178 NEFDVIITDSSDPVGP-------AES-LFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRKIFPAVTYAQS  249 (312)
T ss_dssp             TCEEEEEECCC---------------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred             CCCCEEEEcCCCCCCc-------chh-hhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhhccceEEEeee
Confidence            3469999988766422       111 1235667788888998888877665443333   3344444443321223334


Q ss_pred             eCCcc
Q 011654          154 SNPEF  158 (480)
Q Consensus       154 ~~Pe~  158 (480)
                      +-|.+
T Consensus       250 ~vPty  254 (312)
T d2b2ca1         250 IVSTY  254 (312)
T ss_dssp             ECTTS
T ss_pred             ccCCc
Confidence            45654

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.21  E-value=0.23  Score=44.19  Aligned_cols=40  Identities=18%  Similarity=0.197  Sum_probs=33.0

Q ss_pred             EEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      ++-|.|. +-+|..+|..|++.  |++|++.|+++++++.+.+
T Consensus         7 ~alITGas~GIG~aia~~la~~--Ga~V~~~~r~~~~l~~~~~   47 (242)
T d1cyda_           7 RALVTGAGKGIGRDTVKALHAS--GAKVVAVTRTNSDLVSLAK   47 (242)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             EEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            3445564 67999999999998  9999999999988877654

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=89.17  E-value=0.16  Score=43.92  Aligned_cols=31  Identities=19%  Similarity=0.277  Sum_probs=28.7

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      -|.|||.|..|+..|..+++.  |.+|.+++.+
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~--G~kV~iiE~~   34 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMY--GQKCALIEAK   34 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT--TCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCEEEEEecc
Confidence            489999999999999999998  9999999975

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.07  E-value=0.73  Score=41.06  Aligned_cols=38  Identities=21%  Similarity=0.150  Sum_probs=31.1

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAW   42 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l   42 (480)
                      |+++| | .+-+|..+|..|++.  |++|++.|++++..+++
T Consensus        10 K~alITGas~GIG~aia~~la~~--Ga~V~i~~r~~~~~~~~   49 (260)
T d1h5qa_          10 KTIIVTGGNRGIGLAFTRAVAAA--GANVAVIYRSAADAVEV   49 (260)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHT--TEEEEEEESSCTTHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHH
Confidence            56666 5 567999999999998  99999999987765543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.99  E-value=0.24  Score=44.56  Aligned_cols=40  Identities=10%  Similarity=0.018  Sum_probs=33.4

Q ss_pred             EEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI--GAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++|  |.+-+|..+|..|++.  |++|++.|+++++++.+.+
T Consensus         9 K~alVTGas~GIG~aiA~~la~~--Ga~V~~~~r~~~~l~~~~~   50 (259)
T d1xq1a_           9 KTVLVTGGTKGIGHAIVEEFAGF--GAVIHTCARNEYELNECLS   50 (259)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            55666  4677999999999998  9999999999988776553

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=88.92  E-value=0.22  Score=41.62  Aligned_cols=41  Identities=15%  Similarity=0.132  Sum_probs=35.2

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      +|.|+|+|-+|+..+..++..+ +.+|++.|+++++.+..++
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g-~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAG-AKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHHH
T ss_pred             EEEEEecCCccchHHHHHHHHh-hchheeecchHHHHHHHHH
Confidence            6899999999998888877763 5689999999999887775

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=88.79  E-value=0.14  Score=40.11  Aligned_cols=35  Identities=9%  Similarity=0.144  Sum_probs=27.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcC-CCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKC-PKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~-~G~~V~~~D~~~   36 (480)
                      .+|.|||.|++|.-+|..|..-+ .|.+|+++++.+
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~   56 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGE   56 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence            47999999999999998776531 256899999753

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=88.75  E-value=0.25  Score=44.29  Aligned_cols=39  Identities=18%  Similarity=0.096  Sum_probs=32.3

Q ss_pred             EEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            4 ICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         4 I~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      +-|.| .+-+|..+|..|++.  |++|++.|+++++.+.+.+
T Consensus         8 alVTGas~GIG~aia~~la~~--Ga~V~~~~r~~~~~~~~~~   47 (254)
T d1hdca_           8 VIITGGARGLGAEAARQAVAA--GARVVLADVLDEEGAATAR   47 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             EEEeCcCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            44556 467999999999998  9999999999988776553

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=88.70  E-value=0.11  Score=43.42  Aligned_cols=33  Identities=12%  Similarity=0.096  Sum_probs=28.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      .+|.|||.|..|.-+|..|++.  |.+|+++.+.+
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~--g~~v~v~~~~~   36 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRAS--GWEGNIRLVGD   36 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCCSEEEEECS
T ss_pred             CCEEEECCcHHHHHHHHHHHHc--CCceEEEEecC
Confidence            4799999999999999999998  88877766544

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.64  E-value=0.13  Score=45.38  Aligned_cols=39  Identities=21%  Similarity=0.118  Sum_probs=33.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      .+|-.+|||. | ..+..|++.  |++|+++|.+++.++..++
T Consensus        47 ~rvLd~GCG~-G-~~a~~LA~~--G~~V~gvD~S~~ai~~a~~   85 (229)
T d2bzga1          47 LRVFFPLCGK-A-VEMKWFADR--GHSVVGVEISELGIQEFFT   85 (229)
T ss_dssp             CEEEETTCTT-C-THHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEeCCCC-c-HHHHHHHhC--CCcEEEEeCCHHHHHHHHH
Confidence            4789999999 3 467888988  9999999999999987764

>d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sepiapterin reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.64  E-value=0.27  Score=43.95  Aligned_cols=42  Identities=21%  Similarity=0.238  Sum_probs=34.3

Q ss_pred             EEEEE-cC-ChhHHHHHHHHHHc-CCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI-GA-GYVGGPTMAVIALK-CPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI-Gl-G~~G~~lA~~La~~-~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      ||+|| |. +-+|..+|..|++. ..|++|++.+|++++++.+.+
T Consensus         7 KvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~   51 (259)
T d1oaaa_           7 AVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESMLRQLKE   51 (259)
T ss_dssp             EEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHH
Confidence            79999 54 67999999999861 128999999999998877653

>d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Bacterial sepiapterin reductase
species: Chlorobium tepidum [TaxId: 1097]

Probab=88.62  E-value=2.1  Score=37.41  Aligned_cols=41  Identities=15%  Similarity=0.092  Sum_probs=33.4

Q ss_pred             cEEEEE-cC-ChhHHHHHHHHHHcCCCCe-------EEEEeCCHHHHHHHHC
Q 011654            2 VKICCI-GA-GYVGGPTMAVIALKCPKIE-------VAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VI-Gl-G~~G~~lA~~La~~~~G~~-------V~~~D~~~~~v~~l~~   44 (480)
                      ++|.+| |. +-+|..+|..|+++  |++       |++++++++.++.+.+
T Consensus         1 K~VvlITGas~GIG~aia~~la~~--G~~~~~~~~~v~~~~r~~~~l~~~~~   50 (240)
T d2bd0a1           1 KHILLITGAGKGIGRAIALEFARA--ARHHPDFEPVLVLSSRTAADLEKISL   50 (240)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHH--TTTCTTCCEEEEEEESCHHHHHHHHH
T ss_pred             CCEEEEccCCCHHHHHHHHHHHHh--CccccccCcEEEEEeCCHHHHHHHHH
Confidence            366655 64 67999999999998  876       9999999998877653

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=88.27  E-value=0.26  Score=38.32  Aligned_cols=35  Identities=14%  Similarity=0.234  Sum_probs=28.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHc-CCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALK-CPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~-~~G~~V~~~D~~~   36 (480)
                      .+|.|||.|++|.-+|..|++. ..|.+|+++++.+
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            4899999999999999877642 1278999999853

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.07  E-value=0.3  Score=44.01  Aligned_cols=40  Identities=18%  Similarity=0.095  Sum_probs=33.1

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      |+++| | .+-+|.++|..|++.  |++|++.+|++++++.+.+
T Consensus        15 K~alITGassGIG~aiA~~la~~--G~~Vil~~r~~~~l~~~~~   56 (269)
T d1xu9a_          15 KKVIVTGASKGIGREMAYHLAKM--GAHVVVTARSKETLQKVVS   56 (269)
T ss_dssp             CEEEESSCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHH
Confidence            44444 6 466999999999999  9999999999998887653

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.97  E-value=0.96  Score=37.31  Aligned_cols=80  Identities=16%  Similarity=0.251  Sum_probs=51.7

Q ss_pred             CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCC--hHHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVT--EDQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      +++.+|+++|        |.++ -+..++..|..-|++|.+.-|..-  ++.+........             ......
T Consensus         2 l~gl~Ia~VG--------D~~n-v~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~-------------~~~~~~   59 (163)
T d1pvva2           2 IKGVKVVYVG--------DGNN-VAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNA-------------AESGGS   59 (163)
T ss_dssp             CTTCEEEEES--------CCCH-HHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHH-------------HHHTCE
T ss_pred             cCCCEEEEEC--------CCcH-HHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhh-------------hcccce
Confidence            6899999999        3333 557888888889999999888532  222111000000             000134


Q ss_pred             eeeecCHHHhcccccEEEEEecccc
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEWDE  424 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h~~  424 (480)
                      +++.+++.+|++++|+|.. +-|..
T Consensus        60 ~~~~~d~~ea~~~adviy~-~~~~~   83 (163)
T d1pvva2          60 FELLHDPVKAVKDADVIYT-DVWAS   83 (163)
T ss_dssp             EEEESCHHHHTTTCSEEEE-CCCCC
T ss_pred             EEEecCHHHHhhhccEEee-cceee
Confidence            6788999999999997764 66644

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=87.93  E-value=1.9  Score=36.81  Aligned_cols=122  Identities=14%  Similarity=0.071  Sum_probs=68.8

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHH---HHh--c
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIE---KHV--A   77 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~---~a~--~   77 (480)
                      |-=||||.-...+.  ||+.+|+.+++|+|+++..+..+.+.            ..+....++++. .|..   +.+  .
T Consensus        33 vLeIGcG~G~~~~~--lA~~~p~~~~iGiD~~~~~i~~a~~~------------~~~~~l~Nv~~~~~Da~~l~~~~~~~   98 (204)
T d2fcaa1          33 HIEVGTGKGQFISG--MAKQNPDINYIGIELFKSVIVTAVQK------------VKDSEAQNVKLLNIDADTLTDVFEPG   98 (204)
T ss_dssp             EEEECCTTSHHHHH--HHHHCTTSEEEEECSCHHHHHHHHHH------------HHHSCCSSEEEECCCGGGHHHHCCTT
T ss_pred             EEEEEecCcHHHHH--HHHhCCCCcEEEeecchHHHHHHHHH------------HHHHhccCchhcccchhhhhcccCch
Confidence            45589998766444  56666789999999999988766531            000011234432 2222   112  3


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHHHhc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKILTHN  144 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l~~~  144 (480)
                      ..|.|++.-|.|.....-.+.+-..    .+.++.+...|++|.++.+.| =.....+.+.+.+.+.
T Consensus        99 ~~d~v~i~fp~P~~k~~h~k~Rl~~----~~~l~~~~r~LkpgG~l~i~T-D~~~y~~~~~~~~~~~  160 (204)
T d2fcaa1          99 EVKRVYLNFSDPWPKKRHEKRRLTY----SHFLKKYEEVMGKGGSIHFKT-DNRGLFEYSLKSFSEY  160 (204)
T ss_dssp             SCCEEEEESCCCCCSGGGGGGSTTS----HHHHHHHHHHHTTSCEEEEEE-SCHHHHHHHHHHHHHH
T ss_pred             hhhccccccccccchhhhcchhhhH----HHHHHHHHHhCCCCcEEEEEE-CChHHHHHHHHHHHHC
Confidence            5788998888875321000000011    245677888888888776654 2334444455555554

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=87.91  E-value=0.31  Score=43.40  Aligned_cols=68  Identities=16%  Similarity=0.050  Sum_probs=51.3

Q ss_pred             CceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCChH------HHhhcCcEEEEe
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDVE------KLREIGFIVYSI  465 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~~------~~~~~g~~y~~i  465 (480)
                      .++.+++|..|++++||+|++++..++...--++.|.+.+++..+|+|...+-...      .+++.+++|.+.
T Consensus       127 ~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~~  200 (242)
T d2b0ja2         127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSY  200 (242)
T ss_dssp             GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEEC
T ss_pred             CCCEEECCHHHHHhcCCeEEEeeecHHHHHHHHHHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEECC
Confidence            46788999999999999999999765543223478888888888999999876432      233458888665

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=87.85  E-value=0.17  Score=46.24  Aligned_cols=32  Identities=13%  Similarity=0.197  Sum_probs=29.4

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      -|.|||.|..|+..|..++++  |.+|++++..+
T Consensus        18 DVlVIG~G~aGl~aA~~la~~--G~~V~lvEK~~   49 (308)
T d1y0pa2          18 DVVVVGSGGAGFSAAISATDS--GAKVILIEKEP   49 (308)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT--TCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCcEEEEecCC
Confidence            389999999999999999998  99999999754

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=87.81  E-value=1.6  Score=38.73  Aligned_cols=38  Identities=21%  Similarity=0.135  Sum_probs=30.5

Q ss_pred             EEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHH-HHHHH
Q 011654            3 KICCI--GAGYVGGPTMAVIALKCPKIEVAVVDISVS-RIAAW   42 (480)
Q Consensus         3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~-~v~~l   42 (480)
                      |+++|  |.+-+|..+|..|++.  |++|++.+++.+ ..+.+
T Consensus         8 K~alITGas~GIG~aia~~la~~--G~~Vv~~~r~~~~~~~~~   48 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATE--KAKVVVNYRSKEDEANSV   48 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHH
Confidence            66777  5688999999999998  999999999743 44443

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=87.74  E-value=0.23  Score=42.78  Aligned_cols=31  Identities=16%  Similarity=0.164  Sum_probs=28.6

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      -|.|||.|..|+..|..+++.  |.+|+++|..
T Consensus         5 DvvVIGgGpaGl~aA~~aa~~--G~kV~vie~~   35 (221)
T d1dxla1           5 DVVIIGGGPGGYVAAIKAAQL--GFKTTCIEKR   35 (221)
T ss_dssp             CEEEECCSHHHHHHHHHHHHH--TCCEEEEECS
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCcEEEEEec
Confidence            378999999999999999998  9999999975

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.65  E-value=0.35  Score=42.61  Aligned_cols=38  Identities=11%  Similarity=0.146  Sum_probs=31.8

Q ss_pred             EEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHH
Q 011654            3 KICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAW   42 (480)
Q Consensus         3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l   42 (480)
                      ++-|.| .+-+|..+|..|++.  |++|++.|++++.++..
T Consensus         6 ~~lVTGas~GIG~aia~~l~~~--Ga~V~~~~r~~~~l~~~   44 (234)
T d1o5ia_           6 GVLVLAASRGIGRAVADVLSQE--GAEVTICARNEELLKRS   44 (234)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHT
T ss_pred             EEEEeCCCcHHHHHHHHHHHHC--CCEEEEEECCHHHHHhc
Confidence            345556 477999999999998  99999999999877654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=87.31  E-value=0.9  Score=38.38  Aligned_cols=98  Identities=12%  Similarity=0.060  Sum_probs=56.5

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-ecCHHHH-h-ccC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-STDIEKH-V-AEA   79 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t~d~~~a-~-~~a   79 (480)
                      +|.=|||| .|. .+..|+++  |++|+++|++++.++.+++.            .....-.++.+ ..|..+. . ...
T Consensus        33 rvLDiGcG-~G~-~~~~la~~--g~~v~gvD~s~~~l~~a~~~------------~~~~~~~~~~~~~~d~~~~~~~~~f   96 (198)
T d2i6ga1          33 RTLDLGCG-NGR-NSLYLAAN--GYDVTAWDKNPASMANLERI------------KAAEGLDNLQTDLVDLNTLTFDGEY   96 (198)
T ss_dssp             EEEEETCT-TSH-HHHHHHHT--TCEEEEEESCHHHHHHHHHH------------HHHTTCTTEEEEECCTTTCCCCCCE
T ss_pred             cEEEECCC-CCH-HHHHHHHH--hhhhccccCcHHHHHHHHHH------------hhhccccchhhhheecccccccccc
Confidence            57779999 444 45678888  89999999999988866531            00000012322 2232221 1 244


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEe
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEK  126 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~  126 (480)
                      |+|+.. .+-..         .+-......++.+.+.++++-++++.
T Consensus        97 D~I~~~-~~~~~---------~~~~~~~~~l~~~~~~L~pgG~~~~~  133 (198)
T d2i6ga1          97 DFILST-VVMMF---------LEAQTIPGLIANMQRCTKPGGYNLIV  133 (198)
T ss_dssp             EEEEEE-SCGGG---------SCTTHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             cEEEEe-eeeec---------CCHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            777643 22211         11123567788888888887765543

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=87.28  E-value=0.18  Score=47.05  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=31.2

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSR   38 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~   38 (480)
                      ++|.|+| .|++|..++..|.++  ||+|+++-|+++.
T Consensus         4 ktIlVtGatG~iG~~lv~~Ll~~--G~~V~~l~R~~~~   39 (350)
T d1xgka_           4 KTIAVVGATGRQGASLIRVAAAV--GHHVRAQVHSLKG   39 (350)
T ss_dssp             CCEEEESTTSHHHHHHHHHHHHT--TCCEEEEESCSCS
T ss_pred             CEEEEECCChHHHHHHHHHHHhC--CCeEEEEECCcch
Confidence            4799998 599999999999998  9999999987654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=87.24  E-value=0.22  Score=41.80  Aligned_cols=39  Identities=10%  Similarity=0.103  Sum_probs=33.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      .+|-.||||.--  .+..|+++  |++|+++|++++.++..++
T Consensus        22 ~rvLd~GCG~G~--~a~~la~~--G~~V~gvD~S~~~i~~a~~   60 (201)
T d1pjza_          22 ARVLVPLCGKSQ--DMSWLSGQ--GYHVVGAELSEAAVERYFT   60 (201)
T ss_dssp             CEEEETTTCCSH--HHHHHHHH--CCEEEEEEECHHHHHHHHH
T ss_pred             CEEEEecCcCCH--HHHHHHHc--CCceEeecccHHHHHHHHH
Confidence            478899999875  56688888  9999999999999888764

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.12  E-value=0.22  Score=45.85  Aligned_cols=34  Identities=32%  Similarity=0.516  Sum_probs=30.2

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      +|.|||.|.-|+..|..|+++.+|++|++++.++
T Consensus        52 ~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~   85 (311)
T d2gjca1          52 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV   85 (311)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSS
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCC
Confidence            4899999999999999999754699999999864

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.01  E-value=0.28  Score=42.40  Aligned_cols=31  Identities=23%  Similarity=0.179  Sum_probs=28.7

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      |.|||.|.-|+..|..+++.  |.+|.++|..+
T Consensus         8 viVIG~GpAGl~aA~~aa~~--G~kV~lie~~~   38 (233)
T d1v59a1           8 VVIIGGGPAGYVAAIKAAQL--GFNTACVEKRG   38 (233)
T ss_dssp             EEEECCSHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred             EEEECCCHHHHHHHHHHHHC--CCcEEEEEecC
Confidence            89999999999999999998  99999999753

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.84  E-value=0.23  Score=42.20  Aligned_cols=31  Identities=13%  Similarity=0.311  Sum_probs=28.4

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      .+|.|||.|..|+.-|..+++.  |.+|+++|.
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~--g~~v~vie~   36 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARA--ELKPLLFEG   36 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHT--TCCCEEECC
T ss_pred             ceEEEECCCHHHHHHHHHHHHc--CCcEEEEEe
Confidence            4799999999999999999988  999999985

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=86.78  E-value=0.95  Score=41.21  Aligned_cols=41  Identities=17%  Similarity=0.175  Sum_probs=33.5

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEe-----------CCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVD-----------ISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D-----------~~~~~v~~l~~   44 (480)
                      ++|+|-|.|.||..+|..|.+.  |..|++++           +|.+.+..+..
T Consensus        37 ktvaIqGfGnVG~~~A~~L~e~--Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~   88 (293)
T d1hwxa1          37 KTFAVQGFGNVGLHSMRYLHRF--GAKCVAVGESDGSIWNPDGIDPKELEDFKL   88 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEEEETTEEECCTTCCCHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEEccchhhccccccchHHHHHHHH
Confidence            3799999999999999999998  89988875           55566665553

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=86.44  E-value=0.26  Score=42.89  Aligned_cols=32  Identities=22%  Similarity=0.263  Sum_probs=29.2

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      -|.|||.|.-|++.|..+++.  |++|++++.++
T Consensus         8 DviIIG~GPaGlsaA~~aa~~--G~~V~viE~~~   39 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADE--GLKVAIVERYK   39 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCCEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCeEEEEeccC
Confidence            489999999999999999998  99999999754

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.43  E-value=1.4  Score=37.32  Aligned_cols=97  Identities=16%  Similarity=0.090  Sum_probs=56.2

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH---hccC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH---VAEA   79 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a---~~~a   79 (480)
                      +|-=||||.-.  ++..|++.  |.+|+|+|++++.++..++.           +... .........|..+.   -...
T Consensus        40 ~ILDiGcG~G~--~~~~la~~--~~~v~giD~S~~~i~~ak~~-----------~~~~-~~~~~~~~~d~~~l~~~~~~f  103 (226)
T d1ve3a1          40 KVLDLACGVGG--FSFLLEDY--GFEVVGVDISEDMIRKAREY-----------AKSR-ESNVEFIVGDARKLSFEDKTF  103 (226)
T ss_dssp             EEEEETCTTSH--HHHHHHHT--TCEEEEEESCHHHHHHHHHH-----------HHHT-TCCCEEEECCTTSCCSCTTCE
T ss_pred             EEEEECCCcch--hhhhHhhh--hcccccccccccchhhhhhh-----------hccc-cccccccccccccccccCcCc
Confidence            67889999855  44567887  89999999999988766531           0000 00011122333221   1245


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEE
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVE  125 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~  125 (480)
                      |+|+.. -. ..        ......+..+++++...|++|-.+++
T Consensus       104 D~I~~~-~~-l~--------~~~~~d~~~~l~~i~~~LkpgG~lii  139 (226)
T d1ve3a1         104 DYVIFI-DS-IV--------HFEPLELNQVFKEVRRVLKPSGKFIM  139 (226)
T ss_dssp             EEEEEE-SC-GG--------GCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             eEEEEe-cc-hh--------hCChhHHHHHHHHHHHHcCcCcEEEE
Confidence            676644 22 11        11223456789999999998765443

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=86.32  E-value=0.28  Score=40.87  Aligned_cols=31  Identities=19%  Similarity=0.290  Sum_probs=27.9

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      .|.|||.|..|+..|..+++.  |.+|+++++.
T Consensus         3 DViIIGgGpaGl~AAi~aar~--G~~v~iie~~   33 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARK--GIRTGLMGER   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT--TCCEEEECSS
T ss_pred             cEEEECcCHHHHHHHHHHHHc--CCeEEEEEEe
Confidence            589999999999999998888  9999999863

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=86.15  E-value=0.37  Score=39.75  Aligned_cols=98  Identities=14%  Similarity=0.087  Sum_probs=57.2

Q ss_pred             CCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHH-hhhccccCCCCCCCCCCCCCCCCCceee
Q 011654          324 GKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQR-DLSMKKFDWDHPIHLQPMSPPASKQVNV  402 (480)
Q Consensus       324 ~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (480)
                      .++|+|+|..+          .+..+++.|.++|++|.++|.....-.... .+.     +...         .......
T Consensus         2 ~K~IliiGaG~----------~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~-----~~~~---------~~~~~~~   57 (182)
T d1e5qa1           2 TKSVLMLGSGF----------VTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQ-----HSTP---------ISLDVND   57 (182)
T ss_dssp             CCEEEEECCST----------THHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCT-----TEEE---------EECCTTC
T ss_pred             CCEEEEECCCH----------HHHHHHHHHHhCCCEEEEEECChHHHHHHHhccc-----cccc---------ccccccc
Confidence            68999999977          778899999999999999998765432221 111     0000         0001111


Q ss_pred             ecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCC
Q 011654          403 VWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNI  449 (480)
Q Consensus       403 ~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~  449 (480)
                      ....++.+...|.++.++.....    ........+....++|....
T Consensus        58 ~~~~~~~i~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~  100 (182)
T d1e5qa1          58 DAALDAEVAKHDLVISLIPYTFH----ATVIKSAIRQKKHVVTTSYV  100 (182)
T ss_dssp             HHHHHHHHTTSSEEEECSCGGGH----HHHHHHHHHHTCEEECSSCC
T ss_pred             hhhhHhhhhccceeEeeccchhh----hHHHHHHHhhccceeecccC
Confidence            23445667788988877654431    11222222234467776544

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.14  E-value=0.35  Score=44.35  Aligned_cols=31  Identities=35%  Similarity=0.499  Sum_probs=28.5

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      +||.|.| .|++|..++..|.++  |++|+++|+
T Consensus         2 KKIlVtG~sGfiG~~lv~~L~~~--g~~V~~~d~   33 (312)
T d2b69a1           2 KRILITGGAGFVGSHLTDKLMMD--GHEVTVVDN   33 (312)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeC
Confidence            5899997 699999999999998  999999996

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=86.09  E-value=1.8  Score=36.44  Aligned_cols=70  Identities=17%  Similarity=0.238  Sum_probs=50.5

Q ss_pred             cEEEEEcCC--hhHHHHHHHHHHcCCCCeEEEEeC-----CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH
Q 011654            2 VKICCIGAG--YVGGPTMAVIALKCPKIEVAVVDI-----SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK   74 (480)
Q Consensus         2 mkI~VIGlG--~~G~~lA~~La~~~~G~~V~~~D~-----~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~   74 (480)
                      .||++||=|  .|-.+++..++.-  |.++.++-.     +++.++.+.+            +.. .....+++++++++
T Consensus         6 lkia~vGD~~nnV~~Sli~~~~~~--G~~l~l~~P~~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~d~~e   70 (185)
T d1dxha2           6 ISYAYLGDARNNMGNSLLLIGAKL--GMDVRIAAPKALWPHDEFVAQCKK------------FAE-ESGAKLTLTEDPKE   70 (185)
T ss_dssp             CEEEEESCCSSHHHHHHHHHHHHT--TCEEEEECCGGGSCCHHHHHHHHH------------HHH-HHTCEEEEESCHHH
T ss_pred             CEEEEEcCCcchHHHHHHHHHHHc--CCEEEEEccHHHHhhhHHHHHHHH------------Hhh-ccCCeEEEEeChhh
Confidence            489999944  7899999888886  899998765     3444443332            000 12356889999999


Q ss_pred             HhccCcEEEEec
Q 011654           75 HVAEADIVFVSV   86 (480)
Q Consensus        75 a~~~aDvVii~V   86 (480)
                      +++++|+|..-+
T Consensus        71 ai~~aDvVyt~~   82 (185)
T d1dxha2          71 AVKGVDFVHTDV   82 (185)
T ss_dssp             HTTTCSEEEECC
T ss_pred             ccccccEEEeeh
Confidence            999999988664

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.07  E-value=1.5  Score=38.17  Aligned_cols=97  Identities=14%  Similarity=0.120  Sum_probs=58.6

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE-EecCHHHH-h-ccC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF-FSTDIEKH-V-AEA   79 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~-~t~d~~~a-~-~~a   79 (480)
                      +|.=||||. |. ++..|+++  |++|+|+|.+++-++..++..            .. ...+++ ...|..+. . ...
T Consensus        44 ~iLDiGcGt-G~-~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~------------~~-~~~~i~~~~~d~~~l~~~~~f  106 (251)
T d1wzna1          44 RVLDLACGT-GI-PTLELAER--GYEVVGLDLHEEMLRVARRKA------------KE-RNLKIEFLQGDVLEIAFKNEF  106 (251)
T ss_dssp             EEEEETCTT-CH-HHHHHHHT--TCEEEEEESCHHHHHHHHHHH------------HH-TTCCCEEEESCGGGCCCCSCE
T ss_pred             EEEEeCCCC-Cc-cchhhccc--ceEEEEEeecccccccccccc------------cc-ccccchheehhhhhccccccc
Confidence            578899997 43 35568887  899999999998887766420            00 001222 22333321 1 245


Q ss_pred             cEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEE
Q 011654           80 DIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVE  125 (480)
Q Consensus        80 DvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~  125 (480)
                      |+|+++-.+-.         ..+......+++++.++|++|-++++
T Consensus       107 D~I~~~~~~~~---------~~~~~~~~~~L~~~~~~LkpgG~lii  143 (251)
T d1wzna1         107 DAVTMFFSTIM---------YFDEEDLRKLFSKVAEALKPGGVFIT  143 (251)
T ss_dssp             EEEEECSSGGG---------GSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             chHhhhhhhhh---------cCChHHHHHHHHHHHHHcCCCcEEEE
Confidence            77665422111         23334567889999999998776654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=85.97  E-value=0.89  Score=40.48  Aligned_cols=95  Identities=18%  Similarity=0.167  Sum_probs=56.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHHh--cc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKHV--AE   78 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a~--~~   78 (480)
                      ++|.=+|+|.-+++++..-+- +++-.|+++|++++.++..++.....           ....++++. .|..+.+  ..
T Consensus        87 ~rVLEiG~GsG~lt~~la~~v-~~~g~V~~vD~~e~~~~~A~~n~~~~-----------~~~~nv~~~~~Di~~~~~~~~  154 (250)
T d1yb2a1          87 MDILEVGVGSGNMSSYILYAL-NGKGTLTVVERDEDNLKKAMDNLSEF-----------YDIGNVRTSRSDIADFISDQM  154 (250)
T ss_dssp             CEEEEECCTTSHHHHHHHHHH-TTSSEEEEECSCHHHHHHHHHHHHTT-----------SCCTTEEEECSCTTTCCCSCC
T ss_pred             CEEEEeeeeCcHHHHHHHHHh-CCCcEEEEEECCHHHHHHHHHHHHHh-----------cCCCceEEEEeeeecccccce
Confidence            477888988866554432221 13458999999999888766421000           001233322 2333322  35


Q ss_pred             CcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEE
Q 011654           79 ADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVE  125 (480)
Q Consensus        79 aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~  125 (480)
                      .|.||+-+|.|.                 ++++.+.+.|++|-.++.
T Consensus       155 fD~V~ld~p~p~-----------------~~l~~~~~~LKpGG~lv~  184 (250)
T d1yb2a1         155 YDAVIADIPDPW-----------------NHVQKIASMMKPGSVATF  184 (250)
T ss_dssp             EEEEEECCSCGG-----------------GSHHHHHHTEEEEEEEEE
T ss_pred             eeeeeecCCchH-----------------HHHHHHHHhcCCCceEEE
Confidence            799999887663                 346677788888776654

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=85.95  E-value=1.1  Score=40.06  Aligned_cols=29  Identities=14%  Similarity=0.082  Sum_probs=25.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVV   32 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~   32 (480)
                      .+|+|-|.|.||..+|..|.+.  |..|+++
T Consensus        37 ~~v~IQGfGnVG~~~a~~L~e~--Gakvvav   65 (255)
T d1bgva1          37 KTVALAGFGNVAWGAAKKLAEL--GAKAVTL   65 (255)
T ss_dssp             CEEEECCSSHHHHHHHHHHHHH--TCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHc--CCeEEEE
Confidence            4799999999999999999998  8888754

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=85.93  E-value=0.26  Score=41.60  Aligned_cols=32  Identities=16%  Similarity=0.198  Sum_probs=28.6

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      +|.|||.|..|+.-|..+++.  |.+|+++++..
T Consensus         7 dVvIIGGGpaGl~AA~~~ar~--g~~v~iie~~~   38 (190)
T d1trba1           7 KLLILGSGPAGYTAAVYAARA--NLQPVLITGME   38 (190)
T ss_dssp             EEEEECCSHHHHHHHHHHHTT--TCCCEEECCSS
T ss_pred             cEEEECCCHHHHHHHHHHHHc--CCceEEEEeec
Confidence            699999999999988888887  99999998653

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.92  E-value=2.7  Score=37.67  Aligned_cols=116  Identities=19%  Similarity=0.187  Sum_probs=65.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-ecCHHHHh---c
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-STDIEKHV---A   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t~d~~~a~---~   77 (480)
                      .+|.|||+|.-+.+..  +.+. +.-+|+++++|++.++..++- .+.. .+..+........+++. ..|..+-+   +
T Consensus        74 ~~vLiiG~G~G~~~~~--~l~~-~~~~v~~VEiD~~Vi~~a~~~-f~~~-~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  148 (276)
T d1mjfa_          74 KRVLVIGGGDGGTVRE--VLQH-DVDEVIMVEIDEDVIMVSKDL-IKID-NGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  148 (276)
T ss_dssp             CEEEEEECTTSHHHHH--HTTS-CCSEEEEEESCHHHHHHHHHH-TCTT-TTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             ceEEEecCCchHHHHH--HHHh-CCceEEEecCCHHHHHHHHHh-hhhc-cchhhhhhccCCCCceEEEChHHHHHhccC
Confidence            4799999998877533  3444 345899999999998876641 1111 11111111112344443 34433222   4


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEecCCc
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKSTVP  130 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~STv~  130 (480)
                      .-|+||+-++.|...       ...+ +-.+.++.+.+.|+++-+++..+..+
T Consensus       149 ~yDvIi~D~~~~~~~-------~~~L-~t~eF~~~~~~~L~~~Gv~v~q~~s~  193 (276)
T d1mjfa_         149 GFDVIIADSTDPVGP-------AKVL-FSEEFYRYVYDALNNPGIYVTQAGSV  193 (276)
T ss_dssp             CEEEEEEECCCCC------------T-TSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred             CCCEEEEeCCCCCCC-------cccc-cCHHHHHhhHhhcCCCceEEEecCCc
Confidence            679999988766432       1111 01456788888898877776655443

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=85.68  E-value=0.29  Score=45.92  Aligned_cols=33  Identities=24%  Similarity=0.231  Sum_probs=27.2

Q ss_pred             EEE-EEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            3 KIC-CIG-AGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         3 kI~-VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      ||+ |.| .|++|..++..|.++  |++|+++|+...
T Consensus         2 K~vLITGatGfiGs~lv~~Ll~~--g~~V~~~~r~~~   36 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLLEK--GYEVHGIKRRAS   36 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEECC---
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--cCEEEEEECCCc
Confidence            566 667 899999999999998  999999998543

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=85.65  E-value=0.83  Score=38.49  Aligned_cols=78  Identities=14%  Similarity=0.199  Sum_probs=54.3

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCC--hHHHHH---hhhccccCCCCCCCCCCCCCC
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVT--EDQIQR---DLSMKKFDWDHPIHLQPMSPP  395 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~  395 (480)
                      .+++-+|+++|        |.|+.-+..++..+..-|+++++--|---  ++....   .+..                .
T Consensus         2 ~~~~l~i~~vG--------D~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~----------------~   57 (183)
T d1duvg2           2 AFNEMTLVYAG--------DARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQ----------------Q   57 (183)
T ss_dssp             CGGGCEEEEES--------CTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHH----------------H
T ss_pred             CcCCCEEEEEc--------CCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHH----------------h
Confidence            56788999998        67887888899999888999999988421  111111   0000                0


Q ss_pred             CCCceeeecCHHHhcccccEEEEEeccc
Q 011654          396 ASKQVNVVWDAYQAAKDAHGVCILTEWD  423 (480)
Q Consensus       396 ~~~~~~~~~~~~~a~~~ad~vvi~t~h~  423 (480)
                      ....+.++++++++++++|+|.. +-|.
T Consensus        58 ~g~~~~~~~d~~~a~~~aDvvyt-~~w~   84 (183)
T d1duvg2          58 NGGNITLTEDVAKGVEGADFIYT-DVWV   84 (183)
T ss_dssp             TTCEEEEESCHHHHHTTCSEEEE-CCSS
T ss_pred             cCCceEEEechhhccccCCEEEE-Eehh
Confidence            01346788999999999998876 4553

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=85.54  E-value=0.92  Score=40.39  Aligned_cols=76  Identities=12%  Similarity=0.205  Sum_probs=50.7

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHHhccCcE
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKHVAEADI   81 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a~~~aDv   81 (480)
                      .||+|||  ++  |....+.+.  |.+++++|+|+.      .+                   .+ ..+..++.+..||+
T Consensus       123 ~kV~vIG--~~--P~v~~l~~~--~~~~~VlE~~p~------~g-------------------d~-p~~~~~~lLp~aD~  170 (251)
T d2h1qa1         123 KKVGVVG--HF--PHLESLLEP--ICDLSILEWSPE------EG-------------------DY-PLPASEFILPECDY  170 (251)
T ss_dssp             SEEEEES--CC--TTHHHHHTT--TSEEEEEESSCC------TT-------------------CE-EGGGHHHHGGGCSE
T ss_pred             CEEEEEe--cc--hhHHHHHhc--CCcEEEEeCCCC------CC-------------------CC-CchHHHHhhhcCCE
Confidence            4899996  55  677777776  889999999852      11                   11 22345667899999


Q ss_pred             EEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEE
Q 011654           82 VFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVE  125 (480)
Q Consensus        82 Vii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~  125 (480)
                      ||++=.|                -+-..++.|..+.++...|++
T Consensus       171 viiTGsT----------------lvN~Tl~~LL~~~~~a~~vvl  198 (251)
T d2h1qa1         171 VYITCAS----------------VVDKTLPRLLELSRNARRITL  198 (251)
T ss_dssp             EEEETHH----------------HHHTCHHHHHHHTTTSSEEEE
T ss_pred             EEEEech----------------hhcCCHHHHHHhCCcCCEEEE
Confidence            9998322                233346677787877765543

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.44  E-value=0.98  Score=37.71  Aligned_cols=100  Identities=12%  Similarity=0.050  Sum_probs=59.6

Q ss_pred             cCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          321 TVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       321 ~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      ++++++|.|+|=|.         --..+|+..|.++|+.|...+=....+ ..+     ...+.       .+......+
T Consensus        26 ~l~GK~vvVIGrS~---------iVG~Pla~lL~~~gaTVt~~~~~~~~~-~~~-----~~~~~-------~~~~~~~~~   83 (171)
T d1edza1          26 RLYGKKCIVINRSE---------IVGRPLAALLANDGATVYSVDVNNIQK-FTR-----GESLK-------LNKHHVEDL   83 (171)
T ss_dssp             TTTTCEEEEECCCT---------TTHHHHHHHHHTTSCEEEEECSSEEEE-EES-----CCCSS-------CCCCEEEEE
T ss_pred             CCCCCEEEEECCcc---------ccHHHHHHHHHHCCCEEEEeccccccc-ccc-----cccee-------eeeeccccc
Confidence            68999999999532         347889999999999998876432111 000     00000       000000011


Q ss_pred             e-e-ecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          401 N-V-VWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       401 ~-~-~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                      . + .+.+.+.+..||++|..++.+.|+ +..+    ..++.++|||.-
T Consensus        84 ~~~~~~~lk~~~~~aDIvIsavG~p~~~-i~~d----~ik~GavvIDvG  127 (171)
T d1edza1          84 GEYSEDLLKKCSLDSDVVITGVPSENYK-FPTE----YIKEGAVCINFA  127 (171)
T ss_dssp             EECCHHHHHHHHHHCSEEEECCCCTTCC-BCTT----TSCTTEEEEECS
T ss_pred             cccchhHHhhccccCCEEEEccCCCccc-cChh----hcccCceEeecc
Confidence            1 1 123667778999999999999974 2222    224567899974

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=85.41  E-value=2.8  Score=37.15  Aligned_cols=38  Identities=11%  Similarity=0.083  Sum_probs=30.2

Q ss_pred             EEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCC-HHHHHHH
Q 011654            3 KICCI--GAGYVGGPTMAVIALKCPKIEVAVVDIS-VSRIAAW   42 (480)
Q Consensus         3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~-~~~v~~l   42 (480)
                      |+++|  |.+-+|..+|..|+++  |++|++.|++ ++..+.+
T Consensus        19 K~~lITGas~GIG~aia~~la~~--Ga~Vvi~~~~~~~~~~~~   59 (272)
T d1g0oa_          19 KVALVTGAGRGIGREMAMELGRR--GCKVIVNYANSTESAEEV   59 (272)
T ss_dssp             CEEEETTTTSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCchHHHHHH
Confidence            56666  4799999999999999  9999999987 4444443

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=85.39  E-value=0.32  Score=45.11  Aligned_cols=30  Identities=23%  Similarity=0.370  Sum_probs=28.0

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      -|.|||.|.-|+.+|..|+++  |++|++++.
T Consensus         6 DviIVGsG~aG~v~A~~La~~--G~kVlvLEa   35 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGA--GYKVAMFDI   35 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCEEEEECS
T ss_pred             cEEEECcCHHHHHHHHHHhhC--CCeEEEEec
Confidence            489999999999999999998  999999985

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.38  E-value=0.27  Score=47.74  Aligned_cols=41  Identities=27%  Similarity=0.460  Sum_probs=33.1

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCC-eEEEEeCCHHHHHHHHC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKI-EVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~-~V~~~D~~~~~v~~l~~   44 (480)
                      +||.|||+|.+|..++..|+..  |. +++++|.+.=....|++
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~--Gvg~i~lvD~D~Ve~sNL~R   79 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALS--GFRQIHVIDMDTIDVSNLNR   79 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTT--TCCCEEEECCCBCCGGGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHHc--CCCeEEEEECCCcchhhhcc
Confidence            4899999999999999999998  66 79999987533344443

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.32  E-value=0.37  Score=38.65  Aligned_cols=35  Identities=23%  Similarity=0.280  Sum_probs=28.3

Q ss_pred             cEEEEEcCChhHHHHHHHHHHc--CCCCeEEEEeCCH
Q 011654            2 VKICCIGAGYVGGPTMAVIALK--CPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~--~~G~~V~~~D~~~   36 (480)
                      .+|.|||.|++|.-+|..|++.  ..|.+|++++.++
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~   74 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK   74 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence            4799999999999999998631  1278999998754

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=85.31  E-value=0.33  Score=41.85  Aligned_cols=31  Identities=19%  Similarity=0.127  Sum_probs=28.7

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      .|.|||.|..|+..|..+++.  |.+|++++.+
T Consensus         7 DlvVIG~GpaGl~aA~~aa~~--G~~V~liE~~   37 (220)
T d1lvla1           7 TLLIIGGGPGGYVAAIRAGQL--GIPTVLVEGQ   37 (220)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH--TCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCcEEEEecC
Confidence            489999999999999999998  9999999965

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=85.20  E-value=0.35  Score=45.19  Aligned_cols=30  Identities=13%  Similarity=0.323  Sum_probs=28.0

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      -|-|||.|.-|+.+|..|+++  |++|+++++
T Consensus         4 ~VIVVGsG~aG~v~A~rLaea--G~~VlvLEa   33 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEA--GVQTLMLEM   33 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT--TCCEEEEES
T ss_pred             eEEEeCcCHHHHHHHHHHHHC--cCeEEEEec
Confidence            478999999999999999998  999999986

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=85.10  E-value=1.7  Score=35.54  Aligned_cols=71  Identities=20%  Similarity=0.286  Sum_probs=49.2

Q ss_pred             cEEEEEcC--ChhHHHHHHHHHHcCCCCeEEEEeCC-----HHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHH
Q 011654            2 VKICCIGA--GYVGGPTMAVIALKCPKIEVAVVDIS-----VSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEK   74 (480)
Q Consensus         2 mkI~VIGl--G~~G~~lA~~La~~~~G~~V~~~D~~-----~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~   74 (480)
                      .||++||=  ..|=.++...+++-  |.++++.-..     ++..+...+            ... ...+.+.+++|+++
T Consensus         4 ~ki~~vGD~~nnV~~Sli~~~~~~--g~~i~~~~P~~~~~~~~~~~~~~~------------~~~-~~~~~i~~~~d~~~   68 (161)
T d1vlva2           4 VKVVFMGDTRNNVATSLMIACAKM--GMNFVACGPEELKPRSDVFKRCQE------------IVK-ETDGSVSFTSNLEE   68 (161)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHT--TCEEEEESCGGGCCCHHHHHHHHH------------HHH-HHCCEEEEESCHHH
T ss_pred             CEEEEEcCCccHHHHHHHHHHHHc--CCEEEEecchhhhhhhhHHHHHHH------------HHh-hcCCceEEEecHHH
Confidence            48999994  46888888888886  8998876542     332222211            000 12356889999999


Q ss_pred             HhccCcEEEEecc
Q 011654           75 HVAEADIVFVSVN   87 (480)
Q Consensus        75 a~~~aDvVii~Vp   87 (480)
                      +++++|+|..-.-
T Consensus        69 ai~~aDviyt~~~   81 (161)
T d1vlva2          69 ALAGADVVYTDVW   81 (161)
T ss_dssp             HHTTCSEEEECCC
T ss_pred             hhhhhhheeccce
Confidence            9999999987643

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.04  E-value=1.6  Score=36.06  Aligned_cols=41  Identities=10%  Similarity=0.060  Sum_probs=34.4

Q ss_pred             EEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCC
Q 011654            3 KICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGD   45 (480)
Q Consensus         3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~   45 (480)
                      +|.|.| .|.+|...++.+...  |.+|++.+.++++.+.+++.
T Consensus        28 ~VlI~ga~g~vG~~~iqla~~~--g~~vi~~~~~~~~~~~l~~~   69 (183)
T d1pqwa_          28 RVLIHSATGGVGMAAVSIAKMI--GARIYTTAGSDAKREMLSRL   69 (183)
T ss_dssp             EEEETTTTSHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHTT
T ss_pred             EEEEECCCCCcccccchhhccc--cccceeeecccccccccccc
Confidence            577878 599999888777666  89999999999999888863

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.02  E-value=0.87  Score=38.11  Aligned_cols=89  Identities=25%  Similarity=0.271  Sum_probs=58.5

Q ss_pred             CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChH-HHHHhhhccccCCCCCCCCCCCCCCCCCce
Q 011654          322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTED-QIQRDLSMKKFDWDHPIHLQPMSPPASKQV  400 (480)
Q Consensus       322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  400 (480)
                      +++++|+|+|-          .|....=+.-|+..|.+|.+=----+.. +..+                      ..++
T Consensus        14 ik~k~IaViGY----------GsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~----------------------~~Gf   61 (182)
T d1np3a2          14 IQGKKVAIIGY----------GSQGHAHACNLKDSGVDVTVGLRSGSATVAKAE----------------------AHGL   61 (182)
T ss_dssp             HHTSCEEEECC----------SHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHH----------------------HTTC
T ss_pred             HCCCEEEEEee----------CcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHh----------------------hhcc
Confidence            46899999994          5677777778899999998844433321 1111                      1234


Q ss_pred             eeecCHHHhcccccEEEEEecccccccccH-HHHHHhcCCCCEEE
Q 011654          401 NVVWDAYQAAKDAHGVCILTEWDEFKTLDY-QKIFDNMRKPAYIF  444 (480)
Q Consensus       401 ~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~-~~~~~~~~~~~~i~  444 (480)
                      ++ .+.+||++.||+|+++++- +...--| +.+...|++...+.
T Consensus        62 ~v-~~~~eA~~~aDiim~L~PD-~~q~~vy~~~I~p~lk~g~~L~  104 (182)
T d1np3a2          62 KV-ADVKTAVAAADVVMILTPD-EFQGRLYKEEIEPNLKKGATLA  104 (182)
T ss_dssp             EE-ECHHHHHHTCSEEEECSCH-HHHHHHHHHHTGGGCCTTCEEE
T ss_pred             cc-ccHHHHhhhcCeeeeecch-HHHHHHHHHhhhhhcCCCcEEE
Confidence            43 4799999999999999884 3222223 35777777654443

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.00  E-value=0.55  Score=42.23  Aligned_cols=42  Identities=14%  Similarity=0.108  Sum_probs=35.3

Q ss_pred             cEEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            2 VKICCI--GAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         2 mkI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      ++|++|  |.+-+|..+|..|++.+ |.+|++.+|++++.+...+
T Consensus         3 ~rVAlVTGas~GIG~a~A~~la~~~-g~~Vi~~~r~~~~~~~~~~   46 (275)
T d1wmaa1           3 IHVALVTGGNKGIGLAIVRDLCRLF-SGDVVLTARDVTRGQAAVQ   46 (275)
T ss_dssp             CCEEEESSCSSHHHHHHHHHHHHHS-SSEEEEEESSHHHHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH
Confidence            579999  67899999999999742 7999999999998776553

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=84.96  E-value=0.27  Score=45.27  Aligned_cols=32  Identities=16%  Similarity=0.180  Sum_probs=29.3

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      -|.|||.|.-|+..|..|+++  |++|++++..+
T Consensus        25 DVvVIG~G~aGl~aA~~la~~--G~~V~llEk~~   56 (322)
T d1d4ca2          25 DVVIIGSGGAGLAAAVSARDA--GAKVILLEKEP   56 (322)
T ss_dssp             SEEEECSSHHHHHHHHHHHTT--TCCEEEECSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHC--CCcEEEEeCCC
Confidence            389999999999999999998  99999999754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.91  E-value=0.71  Score=38.29  Aligned_cols=40  Identities=13%  Similarity=0.008  Sum_probs=32.6

Q ss_pred             EEEEEcC-ChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHC
Q 011654            3 KICCIGA-GYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNG   44 (480)
Q Consensus         3 kI~VIGl-G~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~   44 (480)
                      +|.|+|+ |.+|....+.....  |.+|++.+.++++.+.+++
T Consensus        31 ~VlV~Ga~G~vG~~aiq~a~~~--G~~vi~~~~~~~~~~~~~~   71 (174)
T d1yb5a2          31 SVLVHGASGGVGLAACQIARAY--GLKILGTAGTEEGQKIVLQ   71 (174)
T ss_dssp             EEEEETCSSHHHHHHHHHHHHT--TCEEEEEESSHHHHHHHHH
T ss_pred             EEEEEecccccccccccccccc--Ccccccccccccccccccc
Confidence            6899995 99999766655555  8999999999988877664

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=84.76  E-value=2.1  Score=34.85  Aligned_cols=92  Identities=10%  Similarity=0.026  Sum_probs=55.0

Q ss_pred             EEEEEeeccCCCCCcccCChHHH-HHHHHHhC-CCE-EEEECCCCChHH-HHHhhhccccCCCCCCCCCCCCCCCCCcee
Q 011654          326 KIAILGFAFKKDTGDTRETPAID-VCKGLLGD-KAK-LSIYDPQVTEDQ-IQRDLSMKKFDWDHPIHLQPMSPPASKQVN  401 (480)
Q Consensus       326 ~v~ilGla~K~~~~d~r~Sp~~~-l~~~L~~~-g~~-V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (480)
                      ||||+|.+.          .+.. .+..|... +++ +.++||...... ....+                      ++.
T Consensus         3 ri~iIG~G~----------~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~----------------------~~~   50 (164)
T d1tlta1           3 RIGVVGLGG----------IAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESW----------------------RIP   50 (164)
T ss_dssp             EEEEECCST----------HHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHH----------------------TCC
T ss_pred             EEEEEcCCH----------HHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcc----------------------ccc
Confidence            899999753          3433 35556553 676 568999765432 22222                      234


Q ss_pred             eecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcCCCCCh
Q 011654          402 VVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGRNILDV  452 (480)
Q Consensus       402 ~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~~~~~~  452 (480)
                      +.++.++.+++.|+|+|+|++..-.++-...+ +. +.+ ++++=--..+.
T Consensus        51 ~~~~~~~l~~~~D~V~I~tp~~~h~~~~~~al-~~-gk~-V~~EKPla~~~   98 (164)
T d1tlta1          51 YADSLSSLAASCDAVFVHSSTASHFDVVSTLL-NA-GVH-VCVDKPLAENL   98 (164)
T ss_dssp             BCSSHHHHHTTCSEEEECSCTTHHHHHHHHHH-HT-TCE-EEEESSSCSSH
T ss_pred             ccccchhhhhhcccccccccchhccccccccc-cc-cce-eeccccccCCH
Confidence            56788888899999999999875333222222 21 334 66664444443

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.64  E-value=0.44  Score=40.86  Aligned_cols=30  Identities=27%  Similarity=0.182  Sum_probs=28.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      +.|||.|..|+..|..+++.  |.+|.++|.+
T Consensus         6 viIIG~GpaG~~aA~~aar~--G~kV~vIEk~   35 (221)
T d3grsa1           6 YLVIGGGSGGLASARRAAEL--GARAAVVESH   35 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             EEEECCCHHHHHHHHHHHHC--CCEEEEEecc
Confidence            78999999999999999998  9999999974

>d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.58  E-value=0.74  Score=42.53  Aligned_cols=29  Identities=28%  Similarity=0.485  Sum_probs=25.6

Q ss_pred             EEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            4 ICCIG-AGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         4 I~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      |-|.| .|++|..++..|.++  |++|+++|+
T Consensus         4 ILVTGatGfIG~~lv~~Ll~~--g~~V~~~d~   33 (347)
T d1z45a2           4 VLVTGGAGYIGSHTVVELIEN--GYDCVVADN   33 (347)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred             EEEeCCCcHHHHHHHHHHHHC--cCeEEEEEC
Confidence            55665 799999999999998  999999985

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.57  E-value=2  Score=35.44  Aligned_cols=79  Identities=13%  Similarity=0.069  Sum_probs=50.9

Q ss_pred             CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCCh--HHHHHhhhccccCCCCCCCCCCCCCCCCCc
Q 011654          322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTE--DQIQRDLSMKKFDWDHPIHLQPMSPPASKQ  399 (480)
Q Consensus       322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  399 (480)
                      +++.+|+++|        |.|+ -+..+++.|..-|+++.+.-|..-.  .+.........             ......
T Consensus         2 l~gl~I~~vG--------D~~n-V~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~-------------~~~~~~   59 (170)
T d1otha2           2 LKGLTLSWIG--------DGNN-ILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYA-------------KENGTK   59 (170)
T ss_dssp             CTTCEEEEES--------CSSH-HHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHH-------------HHHTCC
T ss_pred             CCCCEEEEEc--------Cchh-HHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHH-------------hccCCE
Confidence            6899999998        5654 4467777777789999988885331  11111000000             000134


Q ss_pred             eeeecCHHHhcccccEEEEEecc
Q 011654          400 VNVVWDAYQAAKDAHGVCILTEW  422 (480)
Q Consensus       400 ~~~~~~~~~a~~~ad~vvi~t~h  422 (480)
                      +.+.+++.++++++|++..-+-.
T Consensus        60 i~~~~d~~~~~~~advi~~~~~~   82 (170)
T d1otha2          60 LLLTNDPLEAAHGGNVLITDTWI   82 (170)
T ss_dssp             EEEESCHHHHHTTCSEEEECCSS
T ss_pred             EEEEcCHHHHHhhhhheeeecee
Confidence            77889999999999999885433

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=84.36  E-value=0.29  Score=42.62  Aligned_cols=31  Identities=26%  Similarity=0.239  Sum_probs=28.4

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      -|.|||.|.-|+..|..+++.  |++|.++|..
T Consensus         5 DviVIG~GpaGl~aA~~aa~~--G~kV~viE~~   35 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKF--DKKVMVLDFV   35 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGG--CCCEEEECCC
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCeEEEEecc
Confidence            488999999999999999998  9999999854

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.35  E-value=0.44  Score=44.06  Aligned_cols=31  Identities=29%  Similarity=0.390  Sum_probs=28.1

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      .||.|.| .|++|..++..|.++  |++|+++|+
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~--g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEA--GYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHT--TCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHC--cCEEEEEEC
Confidence            3799997 699999999999998  999999985

>d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Trypanosoma brucei [TaxId: 5691]

Probab=84.26  E-value=0.45  Score=44.79  Aligned_cols=32  Identities=25%  Similarity=0.499  Sum_probs=27.5

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      |||-|.| +|++|..++..|.++ .||+|+++|.
T Consensus         3 MKVLITG~tGfIGs~lv~~LL~~-~~~~V~~~D~   35 (383)
T d1gy8a_           3 MRVLVCGGAGYIGSHFVRALLRD-TNHSVVIVDS   35 (383)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH-CCCEEEEEEC
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHh-CCCEEEEEec
Confidence            8999997 699999999999753 1899999994

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=84.25  E-value=0.47  Score=42.24  Aligned_cols=36  Identities=22%  Similarity=0.185  Sum_probs=30.0

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHHHHH
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVSRIA   40 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~   40 (480)
                      |+++| | .+-+|..+|..|++.  |++|++.|++++..+
T Consensus         6 K~alITGas~GIG~aia~~la~~--G~~V~~~~~~~~~~~   43 (248)
T d2d1ya1           6 KGVLVTGGARGIGRAIAQAFARE--GALVALCDLRPEGKE   43 (248)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSTTHHH
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHH
Confidence            45555 4 789999999999999  999999999876544

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=84.22  E-value=3  Score=36.46  Aligned_cols=33  Identities=24%  Similarity=0.438  Sum_probs=27.8

Q ss_pred             EEEEE-c-CChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            3 KICCI-G-AGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         3 kI~VI-G-lG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      |+++| | .+-+|.++|..|++.  |++|++.|++++
T Consensus         6 KvalVTGas~GIG~aia~~la~~--Ga~V~~~~~~~~   40 (247)
T d2ew8a1           6 KLAVITGGANGIGRAIAERFAVE--GADIAIADLVPA   40 (247)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCch
Confidence            56666 5 577999999999998  999999999753

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.21  E-value=0.51  Score=42.94  Aligned_cols=33  Identities=15%  Similarity=0.039  Sum_probs=29.1

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      ++|-|.| .|++|..++..|.++  ||+|+++|+..
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~--g~~V~~~~r~~   34 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEK--GYRVHGLVARR   34 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHC--cCEEEEEECCC
Confidence            4678887 699999999999998  99999999864

>d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-N-acetylglucosamine 4-epimerase WbpP
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.09  E-value=0.81  Score=42.08  Aligned_cols=31  Identities=19%  Similarity=0.261  Sum_probs=27.6

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      ++|-|.| .|++|..++..|.+.  ||+|+++|+
T Consensus        17 k~iLVTG~tGfIGs~lv~~L~~~--g~~V~~~d~   48 (341)
T d1sb8a_          17 KVWLITGVAGFIGSNLLETLLKL--DQKVVGLDN   48 (341)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred             CEEEEecCCCHHHHHHHHHHHHC--cCEEEEEEC
Confidence            4677776 699999999999998  999999996

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=83.77  E-value=0.5  Score=40.35  Aligned_cols=31  Identities=23%  Similarity=0.184  Sum_probs=28.4

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      .|.|||.|..|+..|..+++.  |.+|++++..
T Consensus         5 DviVIG~GpaGl~aA~~aar~--G~kV~vIEk~   35 (223)
T d1ebda1           5 ETLVVGAGPGGYVAAIRAAQL--GQKVTIVEKG   35 (223)
T ss_dssp             SEEEECCSHHHHHHHHHHHHT--TCCEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHC--CCEEEEEecC
Confidence            378999999999999999998  9999999875

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=83.47  E-value=1.8  Score=38.36  Aligned_cols=33  Identities=12%  Similarity=-0.013  Sum_probs=27.8

Q ss_pred             EEEEEcC-C--hhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            3 KICCIGA-G--YVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         3 kI~VIGl-G--~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      ++-|.|. |  -+|.++|..|++.  |++|++.+++++
T Consensus         7 ~alITGaag~~GIG~AiA~~la~~--Ga~V~i~~r~~~   42 (274)
T d2pd4a1           7 KGLIVGVANNKSIAYGIAQSCFNQ--GATLAFTYLNES   42 (274)
T ss_dssp             EEEEECCCSTTSHHHHHHHHHHTT--TCEEEEEESSTT
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHC--CCEEEEEeCCHH
Confidence            4566675 5  5999999999998  999999999864

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=83.41  E-value=0.16  Score=42.69  Aligned_cols=30  Identities=13%  Similarity=0.194  Sum_probs=25.2

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      +|.|||.|..|.-+|..|++.  |++|.++.+
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~--g~~v~i~~~   34 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQA--GYQGLITVV   34 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH--TCCSCEEEE
T ss_pred             CEEEECccHHHHHHHHHHHhc--CCceEEEEE
Confidence            599999999999999999988  766555543

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=83.35  E-value=0.35  Score=42.25  Aligned_cols=33  Identities=18%  Similarity=0.321  Sum_probs=28.6

Q ss_pred             EEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHH
Q 011654            3 KICCI--GAGYVGGPTMAVIALKCPKIEVAVVDISVS   37 (480)
Q Consensus         3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~   37 (480)
                      |+++|  |.+-+|..+|..|++.  |++|++.|++++
T Consensus         2 K~alITGas~GIG~aiA~~la~~--Ga~V~i~~~~~~   36 (241)
T d1uaya_           2 RSALVTGGASGLGRAAALALKAR--GYRVVVLDLRRE   36 (241)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHH--TCEEEEEESSCC
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCcc
Confidence            56666  4689999999999999  999999999754

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=83.08  E-value=0.96  Score=38.87  Aligned_cols=96  Identities=10%  Similarity=-0.012  Sum_probs=55.6

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEe-cCHHHH---hc
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFS-TDIEKH---VA   77 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t-~d~~~a---~~   77 (480)
                      ++|.=||||.-..  +..|++.  |.+|+++|++++.++..++.            .......++.+. .|..+.   -.
T Consensus        17 ~rVLDiGcG~G~~--~~~l~~~--~~~v~gvD~s~~~i~~A~~~------------~~~~~~~~i~~~~~d~~~l~~~~~   80 (231)
T d1vl5a_          17 EEVLDVATGGGHV--ANAFAPF--VKKVVAFDLTEDILKVARAF------------IEGNGHQQVEYVQGDAEQMPFTDE   80 (231)
T ss_dssp             CEEEEETCTTCHH--HHHHGGG--SSEEEEEESCHHHHHHHHHH------------HHHTTCCSEEEEECCC-CCCSCTT
T ss_pred             CEEEEecccCcHH--HHHHHHh--CCEEEEEECCHHHHhhhhhc------------cccccccccccccccccccccccc
Confidence            4788899995444  3457777  88999999999887765431            000001233322 232221   12


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEE
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVE  125 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~  125 (480)
                      ..|+|+.. -.-.+        -+|.   ..+++++.+.|++|-.+++
T Consensus        81 ~fD~v~~~-~~l~~--------~~d~---~~~l~~~~r~LkpgG~l~i  116 (231)
T d1vl5a_          81 RFHIVTCR-IAAHH--------FPNP---ASFVSEAYRVLKKGGQLLL  116 (231)
T ss_dssp             CEEEEEEE-SCGGG--------CSCH---HHHHHHHHHHEEEEEEEEE
T ss_pred             cccccccc-ccccc--------cCCH---HHHHHHHHHhcCCCcEEEE
Confidence            46777655 22111        2343   5778899999998775544

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=82.99  E-value=1.9  Score=37.82  Aligned_cols=30  Identities=23%  Similarity=0.258  Sum_probs=25.7

Q ss_pred             cEEEEEcCChhHHHHHHHHH-HcCCCCeEEEEe
Q 011654            2 VKICCIGAGYVGGPTMAVIA-LKCPKIEVAVVD   33 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La-~~~~G~~V~~~D   33 (480)
                      .+|+|-|.|.||..+|..|+ +.  |..|++++
T Consensus        32 ~~vaIqG~GnVG~~~a~~L~~e~--Ga~vv~vs   62 (234)
T d1b26a1          32 ATVAVQGFGNVGQFAALLISQEL--GSKVVAVS   62 (234)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHH--CCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHhc--CCceEEee
Confidence            47999999999999999996 45  78888765

>d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: dTDP-glucose 4,6-dehydratase (RmlB)
species: Streptococcus suis, serotype 2 [TaxId: 1307]

Probab=82.90  E-value=0.52  Score=44.15  Aligned_cols=31  Identities=29%  Similarity=0.490  Sum_probs=27.1

Q ss_pred             cEEEEEc-CChhHHHHHHHHHHcCCCCe-EEEEeC
Q 011654            2 VKICCIG-AGYVGGPTMAVIALKCPKIE-VAVVDI   34 (480)
Q Consensus         2 mkI~VIG-lG~~G~~lA~~La~~~~G~~-V~~~D~   34 (480)
                      |||-|.| +|.+|..++..|+++  |++ |+++|.
T Consensus         1 MkILItG~tGfIGs~l~~~L~~~--g~~vv~~~d~   33 (361)
T d1kewa_           1 MKILITGGAGFIGSAVVRHIIKN--TQDTVVNIDK   33 (361)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHH--CSCEEEEEEC
T ss_pred             CEEEEECCCcHHHHHHHHHHHHC--CCCEEEEEeC
Confidence            8999997 699999999999998  886 667775

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.70  E-value=0.49  Score=38.41  Aligned_cols=31  Identities=23%  Similarity=0.279  Sum_probs=28.2

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            2 VKICCIGAGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      ++|.|||.|.+|..-|..|.+.  |.+|+++..
T Consensus        14 krvLViGgG~va~~ka~~Ll~~--GA~VtVvap   44 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPT--GCKLTLVSP   44 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGG--TCEEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHC--CCEEEEEeC
Confidence            4799999999999999999998  899999954

>d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.44  E-value=0.57  Score=43.13  Aligned_cols=33  Identities=18%  Similarity=0.119  Sum_probs=28.7

Q ss_pred             cEEE-EEc-CChhHHHHHHHHHHcCCCCeEEEEeCCH
Q 011654            2 VKIC-CIG-AGYVGGPTMAVIALKCPKIEVAVVDISV   36 (480)
Q Consensus         2 mkI~-VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~   36 (480)
                      +||+ |.| .|++|..++..|.++  ||+|+++|+.+
T Consensus         1 kKI~LVTG~tGfIG~~l~~~Ll~~--g~~V~~i~r~~   35 (347)
T d1t2aa_           1 RNVALITGITGQDGSYLAEFLLEK--GYEVHGIVRRS   35 (347)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHT--TCEEEEEECCC
T ss_pred             CCEEEEecCCcHHHHHHHHHHHHC--cCEEEEEECCC
Confidence            4785 666 699999999999998  99999999854

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=82.32  E-value=2  Score=35.05  Aligned_cols=76  Identities=11%  Similarity=0.114  Sum_probs=50.2

Q ss_pred             CCCCEEEEEeeccCCCCCcccCC-hHHHHHHHHHhCC-CEEEEECCCCCh--HHHHHhhhccccCCCCCCCCCCCCCCCC
Q 011654          322 VSGKKIAILGFAFKKDTGDTRET-PAIDVCKGLLGDK-AKLSIYDPQVTE--DQIQRDLSMKKFDWDHPIHLQPMSPPAS  397 (480)
Q Consensus       322 ~~~~~v~ilGla~K~~~~d~r~S-p~~~l~~~L~~~g-~~V~~~DP~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  397 (480)
                      +++.+|+++|        |++|| -+..++..|..-| ..+.+.-|..-.  +.......                 ...
T Consensus         2 l~gl~i~~vG--------D~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~-----------------~~~   56 (160)
T d1ekxa2           2 LDNLHVAMVG--------DLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLD-----------------EKG   56 (160)
T ss_dssp             SSSCEEEEES--------CTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHH-----------------HTT
T ss_pred             CCCCEEEEEc--------CCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHh-----------------hhc
Confidence            5788999997        99998 5667888888875 666776664321  11111110                 011


Q ss_pred             CceeeecCHHHhcccccEEEEEeccc
Q 011654          398 KQVNVVWDAYQAAKDAHGVCILTEWD  423 (480)
Q Consensus       398 ~~~~~~~~~~~a~~~ad~vvi~t~h~  423 (480)
                      ..+.+++++.+++++||+|.. +.|.
T Consensus        57 ~~~~~~~d~~~a~~~aDvvy~-~~~~   81 (160)
T d1ekxa2          57 IAWSLHSSIEEVMAEVDILYM-TRVQ   81 (160)
T ss_dssp             CCEEECSCSTTTGGGCSEEEE-CCCC
T ss_pred             cccccccCHHHHhCcCceEEe-eccc
Confidence            345678899999999998875 4453

>d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-tyvelose-2-epimerase
species: Salmonella typhi [TaxId: 90370]

Probab=82.26  E-value=0.62  Score=42.36  Aligned_cols=30  Identities=23%  Similarity=0.424  Sum_probs=27.3

Q ss_pred             EEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            3 KICCIG-AGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      ||-|.| .|++|..++..|.++  |++|+++|+
T Consensus         2 KILVTGatGfIGs~lv~~Ll~~--g~~V~~id~   32 (338)
T d1orra_           2 KLLITGGCGFLGSNLASFALSQ--GIDLIVFDN   32 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT--TCEEEEEEC
T ss_pred             EEEEECCCcHHHHHHHHHHHHC--cCEEEEEEC
Confidence            788886 699999999999998  999999984

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=82.13  E-value=4.8  Score=34.15  Aligned_cols=106  Identities=15%  Similarity=0.113  Sum_probs=61.0

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEE-ecC---HHHH--hc
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFF-STD---IEKH--VA   77 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~-t~d---~~~a--~~   77 (480)
                      |-=||||.-...+.  +|+..|...++|+|+++..+....+.           . .+..-.++++ ..|   +.+.  -.
T Consensus        35 vLdIGcG~G~~~~~--lA~~~p~~~~iGid~~~~~v~~a~~~-----------~-~~~~l~Ni~~~~~da~~l~~~~~~~  100 (204)
T d1yzha1          35 HVEVGSGKGAFVSG--MAKQNPDINYIGIDIQKSVLSYALDK-----------V-LEVGVPNIKLLWVDGSDLTDYFEDG  100 (204)
T ss_dssp             EEEESCTTSHHHHH--HHHHCTTSEEEEEESCHHHHHHHHHH-----------H-HHHCCSSEEEEECCSSCGGGTSCTT
T ss_pred             EEEEeccCCHHHHH--HHHHCCCCceEEEeccHHHHHHHHHh-----------h-hhhccccceeeecCHHHHhhhccCC
Confidence            45589998776544  55556789999999999877765431           0 0000123332 122   1111  24


Q ss_pred             cCcEEEEeccCCCCcCCCCCCCCCChHHHHHHHHHHHhhCCCCCEEEEec
Q 011654           78 EADIVFVSVNTPTKTQGLGAGKAADLTYWESAARMIANVSNSNKIVVEKS  127 (480)
Q Consensus        78 ~aDvVii~Vptp~~~~~~~~~~~~d~~~v~~~~~~i~~~l~~~~iVi~~S  127 (480)
                      ..|.|++.-|.|.....--+.+...    .+.++.+...|++|..+.+.|
T Consensus       101 ~~~~i~i~fPdPw~K~~h~krRl~~----~~~l~~~~~~LkpgG~l~i~T  146 (204)
T d1yzha1         101 EIDRLYLNFSDPWPKKRHEKRRLTY----KTFLDTFKRILPENGEIHFKT  146 (204)
T ss_dssp             CCSEEEEESCCCCCSGGGGGGSTTS----HHHHHHHHHHSCTTCEEEEEE
T ss_pred             ceehhcccccccccchhhhhhhhhH----HHHHHHHHHhCCCCcEEEEEE
Confidence            6788999988885321000000011    356778888999988876654

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.02  E-value=1.5  Score=35.39  Aligned_cols=79  Identities=19%  Similarity=0.275  Sum_probs=45.2

Q ss_pred             CCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCC--CEEEEECCCCCh-HHHHHhhhccccCCCCCCCCCCCCCCCCC
Q 011654          322 VSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDK--AKLSIYDPQVTE-DQIQRDLSMKKFDWDHPIHLQPMSPPASK  398 (480)
Q Consensus       322 ~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g--~~V~~~DP~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (480)
                      -.++||+|+|..+          -...++-.|...|  -++..||..-.. +....++.....             ....
T Consensus         4 ~~~~KI~IiGaG~----------vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~-------------~~~~   60 (148)
T d1ldna1           4 NGGARVVVIGAGF----------VGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKV-------------FAPK   60 (148)
T ss_dssp             TTSCEEEEECCSH----------HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTT-------------SSSS
T ss_pred             CCCCeEEEECcCH----------HHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCcc-------------ccCC
Confidence            3578999999744          2344555555544  589999974321 111112210000             0112


Q ss_pred             ceeeecCHHHhcccccEEEEEeccc
Q 011654          399 QVNVVWDAYQAAKDAHGVCILTEWD  423 (480)
Q Consensus       399 ~~~~~~~~~~a~~~ad~vvi~t~h~  423 (480)
                      ......+.++++++||++|+...-+
T Consensus        61 ~~~~~~~d~~~l~daDvvvitag~~   85 (148)
T d1ldna1          61 PVDIWHGDYDDCRDADLVVICAGAN   85 (148)
T ss_dssp             CCEEEECCGGGTTTCSEEEECCSCC
T ss_pred             CeEEEECCHHHhccceeEEEecccc
Confidence            3344556688999999999976654

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=81.99  E-value=1.5  Score=35.58  Aligned_cols=66  Identities=15%  Similarity=0.305  Sum_probs=47.9

Q ss_pred             cEEEEEcC---ChhHHHHHHHHHHcCCCCeEEEEeCC-----HHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHH
Q 011654            2 VKICCIGA---GYVGGPTMAVIALKCPKIEVAVVDIS-----VSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIE   73 (480)
Q Consensus         2 mkI~VIGl---G~~G~~lA~~La~~~~G~~V~~~D~~-----~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~   73 (480)
                      .||++||=   +.+..+++..+.+-  |.+++.+-..     ++..+.+.+                 ....+..++|++
T Consensus         5 l~i~~vGD~~~srV~~Sli~~~~~~--g~~~~~~~P~~~~~~~~~~~~~~~-----------------~~~~~~~~~d~~   65 (157)
T d1ml4a2           5 LKIGLLGDLKYGRTVHSLAEALTFY--DVELYLISPELLRMPRHIVEELRE-----------------KGMKVVETTTLE   65 (157)
T ss_dssp             EEEEEESCTTTCHHHHHHHHHGGGS--CEEEEEECCGGGCCCHHHHHHHHH-----------------TTCCEEEESCTH
T ss_pred             CEEEEEcCCccChHHHHHHHHHHhc--CCcEEEEccchhhcchHHHHHHHh-----------------hcccceeecCHH
Confidence            48999997   67899999988876  8898887642     222222221                 124577899999


Q ss_pred             HHhccCcEEEEec
Q 011654           74 KHVAEADIVFVSV   86 (480)
Q Consensus        74 ~a~~~aDvVii~V   86 (480)
                      ++++++|+|..-.
T Consensus        66 ~av~~aDvvy~~~   78 (157)
T d1ml4a2          66 DVIGKLDVLYVTR   78 (157)
T ss_dssp             HHHTTCSEEEECC
T ss_pred             HhhccCcEEEeec
Confidence            9999999877653

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=81.94  E-value=0.62  Score=39.75  Aligned_cols=30  Identities=23%  Similarity=0.215  Sum_probs=28.1

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      |.|||.|.-|+..|..+++.  |.+|.++|..
T Consensus         6 viIIGgGpAGl~aA~~aar~--G~~V~viE~~   35 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQL--GLKTALIEKY   35 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHH--TCCEEEEECC
T ss_pred             EEEECcCHHHHHHHHHHHHC--CCeEEEEecc
Confidence            78999999999999999998  9999999964

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=81.85  E-value=0.54  Score=44.59  Aligned_cols=35  Identities=17%  Similarity=0.302  Sum_probs=29.4

Q ss_pred             EEEEEcCChhHHHHHHHHHH----cCCCCeEEEEeCCHH
Q 011654            3 KICCIGAGYVGGPTMAVIAL----KCPKIEVAVVDISVS   37 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~----~~~G~~V~~~D~~~~   37 (480)
                      -|.|||+|.-|++.|..|++    +..|++|.++++..+
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~   72 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAH   72 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCC
Confidence            38999999999999999997    112999999998653

>d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.83  E-value=0.68  Score=42.36  Aligned_cols=31  Identities=19%  Similarity=0.025  Sum_probs=26.7

Q ss_pred             EEEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            3 KICCIG-AGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         3 kI~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      ++-|.| .|++|..++..|.++  ||+|+++|+.
T Consensus         3 ~~LVTGatGfiG~~lv~~Ll~~--g~~V~~~~r~   34 (339)
T d1n7ha_           3 IALITGITGQDGSYLTEFLLGK--GYEVHGLIRR   34 (339)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHT--TCEEEEEECC
T ss_pred             EEEEeCCccHHHHHHHHHHHHC--cCEEEEEECC
Confidence            445556 699999999999998  9999999984

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=81.82  E-value=3  Score=34.81  Aligned_cols=116  Identities=16%  Similarity=0.096  Sum_probs=69.5

Q ss_pred             HHHHHHHHhcCcCCCCEEEEEeeccCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHH-HHHhhhccccCCCCCCC
Q 011654          310 FVNRIVSSMFNTVSGKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQ-IQRDLSMKKFDWDHPIH  388 (480)
Q Consensus       310 ~~~~~~~~l~~~~~~~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~-~~~~~~~~~~~~~~~~~  388 (480)
                      .+..+.+.++.++++++|.|.|-+=         .-...+++.|.++|++|.+.+=..+..+ ....+.. .. .     
T Consensus         9 ~v~~~~~~~~~~l~gK~vlItGasg---------GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~-~~-~-----   72 (191)
T d1luaa1           9 GVALVVKAAGGSVKGKKAVVLAGTG---------PVGMRSAALLAGEGAEVVLCGRKLDKAQAAADSVNK-RF-K-----   72 (191)
T ss_dssp             HHHHHHHHTTSCCTTCEEEEETTTS---------HHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH-HH-T-----
T ss_pred             HHHHHHHHcCCCCCCCEEEEECCCH---------HHHHHHHHHHHhhccchhhcccchHHHHHHHHHHHh-cc-c-----
Confidence            4556777778899999999999532         3578999999999999999877643321 1111110 00 0     


Q ss_pred             CCCCCCCCCCceeeecCHHHhcccccEEEEEecccccccccHHHHHHhcCCCCEEEEcC
Q 011654          389 LQPMSPPASKQVNVVWDAYQAAKDAHGVCILTEWDEFKTLDYQKIFDNMRKPAYIFDGR  447 (480)
Q Consensus       389 ~~~~~~~~~~~~~~~~~~~~a~~~ad~vvi~t~h~~~~~~~~~~~~~~~~~~~~i~D~~  447 (480)
                          .....-++.-.++.++++.++|+||-.+.= -+..++.+.+...+... ++.|..
T Consensus        73 ----~~~~~~d~~~~~~~~~~~~~iDilin~Ag~-g~~~~~~e~~~~~~~~n-v~~~~~  125 (191)
T d1luaa1          73 ----VNVTAAETADDASRAEAVKGAHFVFTAGAI-GLELLPQAAWQNESSIE-IVADYN  125 (191)
T ss_dssp             ----CCCEEEECCSHHHHHHHTTTCSEEEECCCT-TCCCBCHHHHHTCTTCC-EEEECC
T ss_pred             ----hhhhhhhcccHHHHHHHhcCcCeeeecCcc-ccccCCHHHHHhhhcce-eehhHh
Confidence                000001111124567788899988765542 24456766666555444 555543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=81.67  E-value=0.54  Score=43.89  Aligned_cols=29  Identities=24%  Similarity=0.436  Sum_probs=27.4

Q ss_pred             EEEEcCChhHHHHHHHHHHcCCCCeEEEEeC
Q 011654            4 ICCIGAGYVGGPTMAVIALKCPKIEVAVVDI   34 (480)
Q Consensus         4 I~VIGlG~~G~~lA~~La~~~~G~~V~~~D~   34 (480)
                      +-|||.|.-|+.+|..|+++  |++|+++++
T Consensus        10 vIVVGsG~aG~v~A~rLaea--G~~VlvLEa   38 (370)
T d3coxa1          10 ALVIGSGYGGAVAALRLTQA--GIPTQIVEM   38 (370)
T ss_dssp             EEEECCSHHHHHHHHHHHHT--TCCEEEECS
T ss_pred             EEEECcCHHHHHHHHHHHHC--CCeEEEEeC
Confidence            78999999999999999998  999999996

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=81.58  E-value=2.8  Score=38.34  Aligned_cols=116  Identities=14%  Similarity=0.041  Sum_probs=65.1

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEE-EecCHHHHh-----
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDISVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLF-FSTDIEKHV-----   76 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~-~t~d~~~a~-----   76 (480)
                      +|-=+++|.-|.+++  ++..  +.+|+++|.++..++..++..            ....-.+.+ ...|..+.+     
T Consensus       148 rVLDl~~gtG~~s~~--~a~g--~~~V~~vD~s~~al~~a~~n~------------~~ngl~~~~~i~~d~~~~~~~~~~  211 (318)
T d1wxxa2         148 RALDVFSYAGGFALH--LALG--FREVVAVDSSAEALRRAEENA------------RLNGLGNVRVLEANAFDLLRRLEK  211 (318)
T ss_dssp             EEEEETCTTTHHHHH--HHHH--EEEEEEEESCHHHHHHHHHHH------------HHTTCTTEEEEESCHHHHHHHHHH
T ss_pred             eeeccCCCCcHHHHH--HHhc--CCcEEeecchHHHHHHHHHHH------------HHcCCCCcceeeccHHHHhhhhHh
Confidence            455567887777665  3455  679999999999988776420            000001232 334443321     


Q ss_pred             --ccCcEEEEeccCCCCcCCCCCCCCCChH----HHHHHHHHHHhhCCCCCEEEEecCCccchHHHHHHHH
Q 011654           77 --AEADIVFVSVNTPTKTQGLGAGKAADLT----YWESAARMIANVSNSNKIVVEKSTVPVKTAEAIEKIL  141 (480)
Q Consensus        77 --~~aDvVii~Vptp~~~~~~~~~~~~d~~----~v~~~~~~i~~~l~~~~iVi~~STv~~gt~~~l~~~l  141 (480)
                        ...|+|++--|.....       ..+..    ...+.+....+.+++|-+++.+|..+.-+.+.+.+++
T Consensus       212 ~~~~fD~Vi~DpP~~~~~-------~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~~~~~~f~~~v  275 (318)
T d1wxxa2         212 EGERFDLVVLDPPAFAKG-------KKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHHMTEPLFYAMV  275 (318)
T ss_dssp             TTCCEEEEEECCCCSCCS-------TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTTSCHHHHHHHH
T ss_pred             hhcCCCEEEEcCCccccc-------hHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcccCHHHHHHHH
Confidence              3579999886643221       22222    2234555667778888877766544333334444444

>d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=81.29  E-value=6.9  Score=33.91  Aligned_cols=39  Identities=10%  Similarity=0.044  Sum_probs=30.7

Q ss_pred             EEEEE--cCChhHHHHHHHHHHcCCCCeEEEEe-CCHHHHHHHH
Q 011654            3 KICCI--GAGYVGGPTMAVIALKCPKIEVAVVD-ISVSRIAAWN   43 (480)
Q Consensus         3 kI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D-~~~~~v~~l~   43 (480)
                      +|++|  |.+-+|..+|..|++.  |++|++.+ ++++..+.+.
T Consensus         2 pV~lITGas~GIG~a~a~~la~~--Ga~V~i~~~~~~~~~~~~~   43 (244)
T d1edoa_           2 PVVVVTGASRGIGKAIALSLGKA--GCKVLVNYARSAKAAEEVS   43 (244)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHH
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCCHHHHHHHH
Confidence            46666  5688999999999998  99998865 5666666554

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=81.28  E-value=3  Score=34.06  Aligned_cols=70  Identities=23%  Similarity=0.256  Sum_probs=46.9

Q ss_pred             cEEEEEcCC-hhHHHHHHHHHHcCCCCeEEEEeC-----CHHHHHHHHCCCCCCCCCChHHHHHhhcCCCEEEecCHHHH
Q 011654            2 VKICCIGAG-YVGGPTMAVIALKCPKIEVAVVDI-----SVSRIAAWNGDQLPIYEPGLEDVVTQCRGRNLFFSTDIEKH   75 (480)
Q Consensus         2 mkI~VIGlG-~~G~~lA~~La~~~~G~~V~~~D~-----~~~~v~~l~~~~~~~~e~~l~~l~~~~~~~~l~~t~d~~~a   75 (480)
                      .||++||-| .|..+++..+.+-  |.+|+++-.     +++.++.+.+.             .....+.+..+.|+.++
T Consensus         5 l~Ia~VGD~~nv~~Sli~~l~~~--g~~v~~~~P~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~d~~ea   69 (163)
T d1pvva2           5 VKVVYVGDGNNVAHSLMIAGTKL--GADVVVATPEGYEPDEKVIKWAEQN-------------AAESGGSFELLHDPVKA   69 (163)
T ss_dssp             CEEEEESCCCHHHHHHHHHHHHT--TCEEEEECCTTCCCCHHHHHHHHHH-------------HHHHTCEEEEESCHHHH
T ss_pred             CEEEEECCCcHHHHHHHHHHHHc--CCeEEEecccccCCChHHHHHHHHh-------------hhcccceEEEecCHHHH
Confidence            489999964 4666777777765  899998753     34434333321             00123467899999999


Q ss_pred             hccCcEEEEec
Q 011654           76 VAEADIVFVSV   86 (480)
Q Consensus        76 ~~~aDvVii~V   86 (480)
                      +.++|+|..-.
T Consensus        70 ~~~adviy~~~   80 (163)
T d1pvva2          70 VKDADVIYTDV   80 (163)
T ss_dssp             TTTCSEEEECC
T ss_pred             hhhccEEeecc
Confidence            99999888653

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=80.93  E-value=2.4  Score=37.39  Aligned_cols=33  Identities=15%  Similarity=0.160  Sum_probs=25.2

Q ss_pred             EEEEc-CChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011654            4 ICCIG-AGYVGGPTMAVIALKCPKIEVAVVDISVSR   38 (480)
Q Consensus         4 I~VIG-lG~~G~~lA~~La~~~~G~~V~~~D~~~~~   38 (480)
                      |-|-| .+-+|..+|..|++.  |.+|++.+++.+.
T Consensus         8 vlITGgs~GIG~~~A~~la~~--G~~vii~~r~~~~   41 (254)
T d1sbya1           8 VIFVAALGGIGLDTSRELVKR--NLKNFVILDRVEN   41 (254)
T ss_dssp             EEEETTTSHHHHHHHHHHHHT--CCSEEEEEESSCC
T ss_pred             EEEecCCCHHHHHHHHHHHHC--CCEEEEEECCccc
Confidence            44445 467999999999999  9998887665443

>d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Leishmania major [TaxId: 5664]

Probab=80.87  E-value=3.4  Score=36.49  Aligned_cols=40  Identities=15%  Similarity=0.130  Sum_probs=31.1

Q ss_pred             cEEEEE--cCChhHHHHHHHHHHcCCCCeEEEEeC-CHHHHHHHH
Q 011654            2 VKICCI--GAGYVGGPTMAVIALKCPKIEVAVVDI-SVSRIAAWN   43 (480)
Q Consensus         2 mkI~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~-~~~~v~~l~   43 (480)
                      |-|+||  |.+-+|..+|..|++.  |++|++.++ +++..+.+.
T Consensus         2 ~pVAlITGas~GIG~aiA~~la~~--Ga~V~i~~~~~~~~~~~~~   44 (284)
T d1e7wa_           2 VPVALVTGAAKRLGRSIAEGLHAE--GYAVCLHYHRSAAEANALS   44 (284)
T ss_dssp             CCEEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHc--CCEEEEEeCCCHHHHHHHH
Confidence            458888  4578999999999998  999988665 555555554

>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tubulin nucleotide-binding domain-like
superfamily: Tubulin nucleotide-binding domain-like
family: Tubulin, GTPase domain
domain: Cell-division protein FtsZ
species: Thermotoga maritima [TaxId: 2336]

Probab=80.84  E-value=4.7  Score=34.05  Aligned_cols=39  Identities=21%  Similarity=0.296  Sum_probs=31.9

Q ss_pred             cEEEEEcCChhHHHHHHHHHHcC-CCCeEEEEeCCHHHHH
Q 011654            2 VKICCIGAGYVGGPTMAVIALKC-PKIEVAVVDISVSRIA   40 (480)
Q Consensus         2 mkI~VIGlG~~G~~lA~~La~~~-~G~~V~~~D~~~~~v~   40 (480)
                      |||.|||.|--|.-++.+|.+.+ .+.+.+.+|.|.+.++
T Consensus         1 ~kI~viGvGGaG~n~v~~l~~~~~~~v~~iainTD~~~L~   40 (194)
T d1w5fa1           1 LKIKVIGVGGAGNNAINRMIEIGIHGVEFVAVNTDLQVLE   40 (194)
T ss_dssp             CCEEEEEEHHHHHHHHHHHHHHCCTTEEEEEEESCHHHHH
T ss_pred             CeEEEEEeCchHHHHHHHHHHcCCCceEEEEEcCCHHHHh
Confidence            69999999999999999998762 3457788888877654

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.58  E-value=0.54  Score=40.08  Aligned_cols=76  Identities=14%  Similarity=0.087  Sum_probs=46.8

Q ss_pred             CCCEEEEEeec-cCCCCCcccCChHHHHHHHHHhCCCEEEEECCCCChHHHHHhhhccccCCCCCCCCCCCCCCCCCcee
Q 011654          323 SGKKIAILGFA-FKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEDQIQRDLSMKKFDWDHPIHLQPMSPPASKQVN  401 (480)
Q Consensus       323 ~~~~v~ilGla-~K~~~~d~r~Sp~~~l~~~L~~~g~~V~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (480)
                      ..+||+|+|-+ |          -...|++.|+++|++|++.+-....-   ....        + ++.   .....++.
T Consensus         2 ~~kkIlV~GatG~----------iG~~v~~~Ll~~g~~V~~~~R~~~~~---~~~~--------~-~~~---~~~~gD~~   56 (205)
T d1hdoa_           2 AVKKIAIFGATGQ----------TGLTTLAQAVQAGYEVTVLVRDSSRL---PSEG--------P-RPA---HVVVGDVL   56 (205)
T ss_dssp             CCCEEEEESTTSH----------HHHHHHHHHHHTTCEEEEEESCGGGS---CSSS--------C-CCS---EEEESCTT
T ss_pred             CCCEEEEECCCCH----------HHHHHHHHHHHCcCEEEEEEcChhhc---cccc--------c-ccc---cccccccc
Confidence            45799999953 3          57889999999999999985432110   0000        0 000   00011122


Q ss_pred             eecCHHHhcccccEEEEEeccc
Q 011654          402 VVWDAYQAAKDAHGVCILTEWD  423 (480)
Q Consensus       402 ~~~~~~~a~~~ad~vvi~t~h~  423 (480)
                      -.+++.++++++|+|+.+....
T Consensus        57 d~~~l~~al~~~d~vi~~~g~~   78 (205)
T d1hdoa_          57 QAADVDKTVAGQDAVIVLLGTR   78 (205)
T ss_dssp             SHHHHHHHHTTCSEEEECCCCT
T ss_pred             chhhHHHHhcCCCEEEEEeccC
Confidence            2356778999999999887654

>d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.48  E-value=6.5  Score=34.00  Aligned_cols=33  Identities=18%  Similarity=0.157  Sum_probs=27.6

Q ss_pred             EEEE--cCChhHHHHHHHHHHcCCCCeEEEEeCCHHH
Q 011654            4 ICCI--GAGYVGGPTMAVIALKCPKIEVAVVDISVSR   38 (480)
Q Consensus         4 I~VI--GlG~~G~~lA~~La~~~~G~~V~~~D~~~~~   38 (480)
                      |++|  |.+-+|.++|..|+++  |++|++.|++.+.
T Consensus         3 vAlVTGas~GIG~aia~~la~~--G~~Vvi~~r~~~~   37 (266)
T d1mxha_           3 AAVITGGARRIGHSIAVRLHQQ--GFRVVVHYRHSEG   37 (266)
T ss_dssp             EEEETTCSSHHHHHHHHHHHHT--TCEEEEEESSCHH
T ss_pred             EEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCchH
Confidence            5566  4567999999999999  9999999998553

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=80.14  E-value=0.91  Score=40.17  Aligned_cols=39  Identities=10%  Similarity=0.072  Sum_probs=30.8

Q ss_pred             EEEEEcC-Ch--hHHHHHHHHHHcCCCCeEEEEeCCHHHH-HHHH
Q 011654            3 KICCIGA-GY--VGGPTMAVIALKCPKIEVAVVDISVSRI-AAWN   43 (480)
Q Consensus         3 kI~VIGl-G~--~G~~lA~~La~~~~G~~V~~~D~~~~~v-~~l~   43 (480)
                      ++-|.|+ |.  +|.++|..|+++  |.+|++.+++.++. +.+.
T Consensus         8 ~~lItGaag~~GIG~aiA~~la~~--Ga~Vil~~~~~~~~~~~~~   50 (268)
T d2h7ma1           8 RILVSGIITDSSIAFHIARVAQEQ--GAQLVLTGFDRLRLIQRIT   50 (268)
T ss_dssp             EEEECCCSSTTCHHHHHHHHHHHT--TCEEEEEECSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHc--CCEEEEEeCChHHHHHHHH
Confidence            4556685 54  999999999998  99999999987764 3344

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=80.11  E-value=0.55  Score=43.01  Aligned_cols=31  Identities=23%  Similarity=0.275  Sum_probs=28.8

Q ss_pred             EEEEEcCChhHHHHHHHHHHcCCCCeEEEEeCC
Q 011654            3 KICCIGAGYVGGPTMAVIALKCPKIEVAVVDIS   35 (480)
Q Consensus         3 kI~VIGlG~~G~~lA~~La~~~~G~~V~~~D~~   35 (480)
                      .|.|||.|..|+..|..++++  |.+|++++..
T Consensus        21 DVvVIGaG~aGl~AA~~aa~~--G~~V~vlEK~   51 (317)
T d1qo8a2          21 QVLVVGAGSAGFNASLAAKKA--GANVILVDKA   51 (317)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH--TCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHC--CCcEEEEeCC
Confidence            489999999999999999998  9999999975

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=80.08  E-value=1.1  Score=36.24  Aligned_cols=74  Identities=22%  Similarity=0.250  Sum_probs=41.7

Q ss_pred             CEEEEEeeccCCCCCcccCChHHHHHHHHHhCC--CEEEEECCCCChH-HHHHhhhccccCCCCCCCCCCCCCCCCCcee
Q 011654          325 KKIAILGFAFKKDTGDTRETPAIDVCKGLLGDK--AKLSIYDPQVTED-QIQRDLSMKKFDWDHPIHLQPMSPPASKQVN  401 (480)
Q Consensus       325 ~~v~ilGla~K~~~~d~r~Sp~~~l~~~L~~~g--~~V~~~DP~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  401 (480)
                      +||+|+|..+          -...++-.|..+|  .++..||..-... ....++......+..             ...
T Consensus         2 kKI~IIGaG~----------VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~-------------~~~   58 (146)
T d1hyha1           2 RKIGIIGLGN----------VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEA-------------HGN   58 (146)
T ss_dssp             CEEEEECCSH----------HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSS-------------CCE
T ss_pred             CeEEEECcCH----------HHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCC-------------ccc
Confidence            7999999754          2344555566555  5899999753321 001122111111111             122


Q ss_pred             eecCHHHhcccccEEEEEec
Q 011654          402 VVWDAYQAAKDAHGVCILTE  421 (480)
Q Consensus       402 ~~~~~~~a~~~ad~vvi~t~  421 (480)
                      ...+-++++++||+||+...
T Consensus        59 ~~~~d~~~l~~adiVVitaG   78 (146)
T d1hyha1          59 IVINDWAALADADVVISTLG   78 (146)
T ss_dssp             EEESCGGGGTTCSEEEECCS
T ss_pred             eeccCHHHhccccEEEEecc
Confidence            33455778999999999765