Citrus Sinensis ID: 011659

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
MGSLKTAKRTQVICIILLVGIIISLNTNGVESRKARNSDWFEYSAISCRAHSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDVYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPVIQNINYRDMVAENVTMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGISSGVTPKPCELLPDHEPAQTTECNFPDNRLPVENMGVQMCSYKANYL
cccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEccccccccccccHHHHHHHHHHHHcccccccEEEEEcccEEEEEEEEEEcccEEEEEcccEEEcccccccccccccccccccccccccccccccEEEEccEEEEEEcccEEEcccccHHHHccccccccccccEEEEEEEEEcEEEEcEEEEccccEEEEEEcEEcEEEEEEEEEccccccccccccccccccEEEEEcEEEccccEEEEEccccccccccccccccEEEEEEEEEcccccEEEEcccccccEEEEEEEEEEEEccccEEEEEEcccccEEEEEEEEEEEEEEcccEEEEEEcccccccccccccccccEEEEEEEEEEEEEcccEEEEEEccccccEEcEEEEEEEEEEccccccccEEEEEEEEEEccccccccccccccccccccccccccccccEEccEEEEEEEccccc
cccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHcccccEEEEEccccEEEccEEcccccEEEEEEcEEEEccccccccccccccccccccccccccccEEEEEEccccEEEEEccccEEEcccHHHHHHHcccccccccccEEEEEEcccEEEEEEEEEccccEEEEEEcccEEEEEEEEEEccccccccccEEEEccEEEEEEccEEEcccccEEEEEcccHccEEEccccccEEEEEEEEcccccEEEEEcccccccEEEEEEEEEEEEEcccEEEEEEcccccEEEEEEEEEEEEEEcEEEEEEEEccccccccccccccccEEEEEEEEEEEEEEEcEEEEEEEcccccccccEEEEEEEEEEcccccccccEEccEEEEEccccccccHHcccccccccccccccccccccccEEEEEEEcccccc
mgslktakRTQVICIILLVGIIISlntngvesrkarnsdwfeysAISCRAHSasleefggvgdgttsNTKAFKAAIDHLSRfqseggsqlfvppgkwltgsfnltshfTLFLHKDAVLLAsqdekewpvieplpsygrgrdteggrysslifgtnltdvvitgdngtidgqgELWWRKFRAgelkytrpYLIEIMYSqniqisnltlinspswnvhpvysssvIVQGItilapvtspntdginpdsctntriedcyivsgddcvavksgwdqygiaygmptKQLIIRRLTCISPFSAVIALgsemsggiqdvraeditaidsesgVRIKTavgrggfvKDVYVRRMTMKTMKWAFWItgsygshpdnnydphalpviqninyrDMVAENVTMAARLegiagdpftgiciSNVTieltnkpkklqwnctditgissgvtpkpcellpdhepaqttecnfpdnrlpvenmgvQMCSYKANYL
mgslktakrtQVICIILLVGIiislntngvesrkarnSDWFEYSAISCRAHSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASqdekewpvieplpsygrgrdtEGGRYSSLIFGTNLTDVVITGDngtidgqgelwWRKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILApvtspntdgiNPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDItaidsesgvriktavgrggfvkdvYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPVIQNINYRDMVAENVTMAARLEGIAGDPFTGICISNVTIEltnkpkklqWNCTDITGISSGVTPKPCELLPDHEPAQTTECNFPDNRLPVENMGVQMCSYKANYL
MGSLKTAKRTQviciillvgiiiSLNTNGVESRKARNSDWFEYSAISCRAHSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDVYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPVIQNINYRDMVAENVTMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGISSGVTPKPCELLPDHEPAQTTECNFPDNRLPVENMGVQMCSYKANYL
*********TQVICIILLVGIIISLNTNGVESRKARNSDWFEYSAISCRAHSASLEEFGGVGDGTT*NTKAFKAAIDHLSRFQSEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDVYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPVIQNINYRDMVAENVTMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGISSGVTPK*C**************************************
***********VICIILLVGIIISLNTNGVES**A*NSDWFEYSAISCRAHSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDVYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPVIQNINYRDMVAENVTMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGISSGVTPKPCEL***********CNFPDNRLPVENMGVQMC*Y****L
********RTQVICIILLVGIIISLNTNGVESRKARNSDWFEYSAISCRAHSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDVYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPVIQNINYRDMVAENVTMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGISSGVTPKPCELLPDHEPAQTTECNFPDNRLPVENMGVQMCSYKANYL
*GSLKTAKRTQVICIILLVGIIISLNTNGVE********WFEYSAISCRAHSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDVYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPVIQNINYRDMVAENVTMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGISSGVTPKPCELLPDHEPAQTTECNFPDNRLPVENMGVQMCSYKA***
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSLKTAKRTQVICIILLVGIIISLNTNGVESRKARNSDWFEYSAISCRAHSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDVYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPVIQNINYRDMVAENVTMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGISSGVTPKPCELLPDHEPAQTTECNFPDNRLPVENMGVQMCSYKANYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query480 2.2.26 [Sep-21-2011]
A7PZL3491 Probable polygalacturonas no no 0.935 0.914 0.777 0.0
Q7M1E7514 Polygalacturonase OS=Cham N/A no 0.687 0.642 0.277 3e-26
Q9FY19507 Polygalacturonase OS=Juni N/A no 0.810 0.767 0.269 6e-24
P43212514 Polygalacturonase OS=Cryp N/A no 0.789 0.737 0.260 9e-23
P27644312 Polygalacturonase OS=Rhiz yes no 0.445 0.685 0.310 2e-22
Q9LW07456 Probable polygalacturonas no no 0.608 0.640 0.286 3e-22
O22818405 Probable polygalacturonas no no 0.745 0.883 0.262 1e-20
O23147431 Polygalacturonase ADPG1 O no no 0.762 0.849 0.239 2e-20
P18192402 Endo-polygalacturonase OS N/A no 0.581 0.694 0.301 6e-19
P26509402 Endo-polygalacturonase OS N/A no 0.566 0.676 0.298 1e-17
>sp|A7PZL3|PGLR_VITVI Probable polygalacturonase OS=Vitis vinifera GN=GSVIVT00026920001 PE=1 SV=1 Back     alignment and function desciption
 Score =  750 bits (1937), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/449 (77%), Positives = 393/449 (87%)

Query: 31  ESRKARNSDWFEYSAISCRAHSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQL 90
           E RK R  +  EYSAISCRAHSASL +FGGVGDG T NTKAF+ A+  LS++ SEGG+QL
Sbjct: 41  ECRKGRILEALEYSAISCRAHSASLVDFGGVGDGQTLNTKAFQDAVSELSKYGSEGGAQL 100

Query: 91  FVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSL 150
           +VP GKWLTGSF+LTSHFTLFLH+DAVLLASQD  +WPVI+PLPSYGRGRD   GRY+SL
Sbjct: 101 YVPAGKWLTGSFSLTSHFTLFLHRDAVLLASQDISQWPVIKPLPSYGRGRDAAAGRYTSL 160

Query: 151 IFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMYSQNIQISNLTLINS 210
           IFGTNLTDV+ITGDNGTIDGQG LWW++F  G+LKYTRPYLIE+MYS +IQISNLTL+NS
Sbjct: 161 IFGTNLTDVIITGDNGTIDGQGGLWWQRFHGGKLKYTRPYLIELMYSADIQISNLTLLNS 220

Query: 211 PSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGW 270
           PSWNVHPVYS ++++QGITILAPV SPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGW
Sbjct: 221 PSWNVHPVYSRNILIQGITILAPVRSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGW 280

Query: 271 DQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKT 330
           D+YGIAYGMPTKQL+IRRLTCISP+SAVIALGSEMSGGIQDVRAEDI AI+SESG+RIKT
Sbjct: 281 DEYGIAYGMPTKQLVIRRLTCISPYSAVIALGSEMSGGIQDVRAEDIVAINSESGIRIKT 340

Query: 331 AVGRGGFVKDVYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPVIQNINYRDMVAENV 390
            +GRGG+VKD+YVR MTMKTMKWAFW+TG+YGSH DN+YDP A PVIQ INYRDMVAENV
Sbjct: 341 GIGRGGYVKDIYVRGMTMKTMKWAFWMTGNYGSHADNHYDPKAFPVIQGINYRDMVAENV 400

Query: 391 TMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGISSGVTPKPCELLPDHEP 450
           +MAARLEGI  DPFTGICISNVTI L  K KK+ W CTD+ GISSGVTP PC  LPD  P
Sbjct: 401 SMAARLEGIPSDPFTGICISNVTIHLAAKAKKVPWTCTDVEGISSGVTPTPCSTLPDQGP 460

Query: 451 AQTTECNFPDNRLPVENMGVQMCSYKANY 479
            +T+ CNFP   LP++ + +Q CSY  NY
Sbjct: 461 EKTSLCNFPAESLPIDTVELQKCSYGINY 489

Vitis vinifera (taxid: 29760)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5
>sp|Q7M1E7|PGLR2_CHAOB Polygalacturonase OS=Chamaecyparis obtusa PE=1 SV=1 Back     alignment and function description
>sp|Q9FY19|PGLR2_JUNAS Polygalacturonase OS=Juniperus ashei GN=JNA2 PE=1 SV=1 Back     alignment and function description
>sp|P43212|PGLR2_CRYJA Polygalacturonase OS=Cryptomeria japonica PE=1 SV=1 Back     alignment and function description
>sp|P27644|PGLR_RHIRD Polygalacturonase OS=Rhizobium radiobacter GN=pgl PE=2 SV=1 Back     alignment and function description
>sp|Q9LW07|PGLR3_ARATH Probable polygalacturonase At3g15720 OS=Arabidopsis thaliana GN=At3g15720 PE=1 SV=1 Back     alignment and function description
>sp|O22818|PGLR6_ARATH Probable polygalacturonase At2g43860 OS=Arabidopsis thaliana GN=At2g43860 PE=2 SV=1 Back     alignment and function description
>sp|O23147|ADPG1_ARATH Polygalacturonase ADPG1 OS=Arabidopsis thaliana GN=ADPG1 PE=2 SV=1 Back     alignment and function description
>sp|P18192|PGLR1_PECCC Endo-polygalacturonase OS=Pectobacterium carotovorum subsp. carotovorum GN=peh PE=3 SV=1 Back     alignment and function description
>sp|P26509|PGLR2_PECSS Endo-polygalacturonase OS=Pectobacterium sp. (strain SCC3193) GN=pehA PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
255537567480 polygalacturonase, putative [Ricinus com 0.945 0.945 0.828 0.0
356513351469 PREDICTED: probable polygalacturonase-li 0.935 0.957 0.830 0.0
224058441481 predicted protein [Populus trichocarpa] 0.981 0.979 0.796 0.0
225426168480 PREDICTED: probable polygalacturonase [V 0.945 0.945 0.817 0.0
356528677494 PREDICTED: probable polygalacturonase-li 0.935 0.908 0.812 0.0
224071986470 predicted protein [Populus trichocarpa] 0.945 0.965 0.801 0.0
388499792469 unknown [Lotus japonicus] 0.966 0.989 0.756 0.0
224064057470 predicted protein [Populus trichocarpa] 0.95 0.970 0.767 0.0
388512935469 unknown [Lotus japonicus] 0.966 0.989 0.756 0.0
359489656479 PREDICTED: probable polygalacturonase-li 0.935 0.937 0.777 0.0
>gi|255537567|ref|XP_002509850.1| polygalacturonase, putative [Ricinus communis] gi|223549749|gb|EEF51237.1| polygalacturonase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  805 bits (2079), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 376/454 (82%), Positives = 414/454 (91%)

Query: 27  TNGVESRKARNSDWFEYSAISCRAHSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEG 86
           TNGV+SRK      FEY+AISCRAH ASLE+FGGVGDG TSNTKAF+AAIDHLS+F  +G
Sbjct: 27  TNGVDSRKRPKLACFEYAAISCRAHEASLEDFGGVGDGQTSNTKAFQAAIDHLSQFSYDG 86

Query: 87  GSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGR 146
           GSQL+VPPGKWLTGSFNLTSHFTLFL KDAVLLASQDE EWPVIEPLPSYGRGRDTEGGR
Sbjct: 87  GSQLYVPPGKWLTGSFNLTSHFTLFLDKDAVLLASQDESEWPVIEPLPSYGRGRDTEGGR 146

Query: 147 YSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMYSQNIQISNLT 206
           YSSLIFGTNLTDVVITG NGTIDGQG+LWW+KF  GE+ YTRPYLIEIMYS NIQISNLT
Sbjct: 147 YSSLIFGTNLTDVVITGANGTIDGQGDLWWKKFHNGEINYTRPYLIEIMYSNNIQISNLT 206

Query: 207 LINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAV 266
           L+NSPSWN+HP YSS+V+VQGITILAPV SPNTDGINPDSCTNTRIEDCYIVSGDDCVAV
Sbjct: 207 LMNSPSWNIHPTYSSNVVVQGITILAPVNSPNTDGINPDSCTNTRIEDCYIVSGDDCVAV 266

Query: 267 KSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGV 326
           KSGWD+YGI++GMPTKQL+IRRLTCISP SA IALGSEMSGGIQDVRAEDIT I++ESGV
Sbjct: 267 KSGWDEYGISFGMPTKQLVIRRLTCISPTSAAIALGSEMSGGIQDVRAEDITCINTESGV 326

Query: 327 RIKTAVGRGGFVKDVYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPVIQNINYRDMV 386
           RIKT+VGRGG+VKD+YVR+MTM TMKW FW+TG+YGSHPDNNYDP+A+PVI+NINYRD+V
Sbjct: 327 RIKTSVGRGGYVKDIYVRKMTMHTMKWVFWMTGNYGSHPDNNYDPNAIPVIENINYRDIV 386

Query: 387 AENVTMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGISSGVTPKPCELLP 446
           AENVTMAARLEGIAGDPFTGICISNVTI L  KPKKLQWNCTDI GISSGVTPKPC LLP
Sbjct: 387 AENVTMAARLEGIAGDPFTGICISNVTIGLAQKPKKLQWNCTDIAGISSGVTPKPCSLLP 446

Query: 447 DHEPAQTTECNFPDNRLPVENMGVQMCSYKANYL 480
           + E  +  +CNFP++ LP+EN+ V+MCS    YL
Sbjct: 447 EQEKEKIADCNFPEDSLPIENIEVKMCSSSRKYL 480

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356513351|ref|XP_003525377.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|224058441|ref|XP_002299511.1| predicted protein [Populus trichocarpa] gi|222846769|gb|EEE84316.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225426168|ref|XP_002278930.1| PREDICTED: probable polygalacturonase [Vitis vinifera] Back     alignment and taxonomy information
>gi|356528677|ref|XP_003532926.1| PREDICTED: probable polygalacturonase-like [Glycine max] Back     alignment and taxonomy information
>gi|224071986|ref|XP_002303605.1| predicted protein [Populus trichocarpa] gi|222841037|gb|EEE78584.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388499792|gb|AFK37962.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224064057|ref|XP_002301370.1| predicted protein [Populus trichocarpa] gi|222843096|gb|EEE80643.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|388512935|gb|AFK44529.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|359489656|ref|XP_003633958.1| PREDICTED: probable polygalacturonase-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
TAIR|locus:2117964495 AT4G23500 [Arabidopsis thalian 0.918 0.890 0.755 1.4e-190
TAIR|locus:2082787476 AT3G61490 [Arabidopsis thalian 0.922 0.930 0.694 2.3e-181
TAIR|locus:2101313469 AT3G48950 [Arabidopsis thalian 0.925 0.946 0.687 6.1e-174
TAIR|locus:2061396477 AT2G23900 [Arabidopsis thalian 0.897 0.903 0.668 7.9e-165
TAIR|locus:2098038471 AT3G62110 [Arabidopsis thalian 0.887 0.904 0.508 6.5e-122
TAIR|locus:2128524444 AT4G23820 [Arabidopsis thalian 0.822 0.889 0.536 7.3e-114
TAIR|locus:2119156475 AT4G33440 [Arabidopsis thalian 0.835 0.844 0.507 1e-109
TAIR|locus:2152980449 AT5G41870 [Arabidopsis thalian 0.814 0.870 0.503 2.3e-103
TAIR|locus:2086740455 AT3G16850 [Arabidopsis thalian 0.856 0.903 0.468 1e-100
TAIR|locus:2202170506 AT1G19170 [Arabidopsis thalian 0.808 0.766 0.469 7.1e-100
TAIR|locus:2117964 AT4G23500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1847 (655.2 bits), Expect = 1.4e-190, P = 1.4e-190
 Identities = 333/441 (75%), Positives = 389/441 (88%)

Query:    33 RKARNSDWFEYSAISCRAHSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFV 92
             R     + FEYSAISCRA+SASL+EFG VGDG TSNT AF+ A+  LSRF   GGS LFV
Sbjct:    48 RNHHRGEEFEYSAISCRAYSASLDEFGAVGDGVTSNTAAFRDAVSQLSRFADYGGSLLFV 107

Query:    93 PPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIF 152
             P G+WLTG+FNLTSHFTLFLH+DAV+LASQ+E ++ VIEPLPSYGRGRDT+GGR+ SL+F
Sbjct:   108 PAGRWLTGNFNLTSHFTLFLHRDAVILASQEESDYEVIEPLPSYGRGRDTDGGRFISLLF 167

Query:   153 GTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPS 212
             G+NLTDVVITG+NGTIDGQGE WW KF+ GELKYTRPYLIEIM+S  IQISNLT +NSPS
Sbjct:   168 GSNLTDVVITGENGTIDGQGEPWWGKFKRGELKYTRPYLIEIMHSDGIQISNLTFLNSPS 227

Query:   213 WNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQ 272
             W++HPVYSS++ +QG+TILAPVT PNTDGINPDSCTNTRIEDCYIVSGDDC+AVKSGWDQ
Sbjct:   228 WHIHPVYSSNIYIQGLTILAPVTVPNTDGINPDSCTNTRIEDCYIVSGDDCIAVKSGWDQ 287

Query:   273 YGIAYGMPTKQLIIRRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAV 332
             YGI YGMPTKQL+IRRLTCISP SAVIALGSEMSGGI+DVRAEDI AI+SESG+RIKTA+
Sbjct:   288 YGINYGMPTKQLLIRRLTCISPDSAVIALGSEMSGGIEDVRAEDIVAINSESGIRIKTAI 347

Query:   333 GRGGFVKDVYVRRMTMKTMKWAFWITGSYGSHPDNNYDPHALPVIQNINYRDMVAENVTM 392
             GRGG+VKDVYVR MTM TMK+ FW+TGSYGSHPD++YDP ALPVIQNINY+DMVAENVTM
Sbjct:   348 GRGGYVKDVYVRGMTMMTMKYVFWMTGSYGSHPDDHYDPKALPVIQNINYQDMVAENVTM 407

Query:   393 AARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGISSGVTPKPCELLPDHEPAQ 452
              A+L GI+GD FTGICISNVTI L+ KPKK+ WNCTD++G +SGVTP+PC+LLP+ +P  
Sbjct:   408 PAQLAGISGDQFTGICISNVTITLSKKPKKVLWNCTDVSGYTSGVTPQPCQLLPEKQPGT 467

Query:   453 TTECNFPDNRLPVENMGVQMC 473
                CNFP++ +P++ + +Q C
Sbjct:   468 VVPCNFPEDPIPIDEVKLQRC 488
GO:0004650 "polygalacturonase activity" evidence=IEA;ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA;ISS
GO:0005618 "cell wall" evidence=IDA
TAIR|locus:2082787 AT3G61490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101313 AT3G48950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061396 AT2G23900 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2098038 AT3G62110 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128524 AT4G23820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2119156 AT4G33440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152980 AT5G41870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2086740 AT3G16850 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2202170 AT1G19170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A7PZL3PGLR_VITVI3, ., 2, ., 1, ., 1, 50.77720.93540.9144nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00010865
hypothetical protein (481 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
COG5434542 COG5434, PGU1, Endopygalactorunase [Cell envelope 2e-54
pfam00295325 pfam00295, Glyco_hydro_28, Glycosyl hydrolases fam 8e-29
PLN03003456 PLN03003, PLN03003, Probable polygalacturonase At3 2e-24
PLN02218431 PLN02218, PLN02218, polygalacturonase ADPG 1e-22
PLN02793443 PLN02793, PLN02793, Probable polygalacturonase 6e-19
PLN02188404 PLN02188, PLN02188, polygalacturonase/glycoside hy 2e-17
PLN03010409 PLN03010, PLN03010, polygalacturonase 7e-17
PLN02155394 PLN02155, PLN02155, polygalacturonase 6e-15
pfam12708222 pfam12708, Pectate_lyase_3, Pectate lyase superfam 1e-07
>gnl|CDD|227721 COG5434, PGU1, Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score =  190 bits (485), Expect = 2e-54
 Identities = 113/348 (32%), Positives = 169/348 (48%), Gaps = 37/348 (10%)

Query: 33  RKARNSDWFEYSAISCRAHSA--------SLEEFGGVGDGTTSNTKAFKAAIDHLSRFQS 84
            ++ N++  E    S   +          S+ + G VGDG T NT A +AAID  +   S
Sbjct: 55  VRSFNAEGSESEDSSPAINIKTAATDTAFSVSDDGAVGDGATDNTAAIQAAIDACA---S 111

Query: 85  EGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEWP---------------V 129
            GG  + +P G +L+G   L S+ TL L + A LLAS + K++P                
Sbjct: 112 AGGGTVLLPAGTYLSGPLFLKSNVTLHLAEGATLLASSNPKDYPSFTSRFNGNSGPYVYA 171

Query: 130 IEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQ----GELWWRKFRAGEL- 184
            +   +   G     G+   LI G +     I G  GTIDG     G+ W+    A E  
Sbjct: 172 TDSDNAMISGEGLADGKADLLIAGNSSNRKEIWG-KGTIDGNGYKRGDKWFSGLGAVETR 230

Query: 185 ---KYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDG 241
              K  RP  + +   +N+ +  L + NSP W VHPV   ++  + +TI A     NTDG
Sbjct: 231 IGGKGVRPRTVVLKGCRNVLLEGLNIKNSPLWTVHPVDCDNLTFRNLTIDANRFD-NTDG 289

Query: 242 INPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFSAVIAL 301
            +P SC+N  IE C   +GDDC+A+KSG    G     P++ ++IR     S    ++ L
Sbjct: 290 FDPGSCSNVLIEGCRFDTGDDCIAIKSGAGLDGKKGYGPSRNIVIRNCYFSSGHGGLV-L 348

Query: 302 GSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDVYVRRMTMK 349
           GSEM GG+Q++  ED    +++ G+RIKT  GRGG V+++      M+
Sbjct: 349 GSEMGGGVQNITVEDCVMDNTDRGLRIKTNDGRGGGVRNIVFEDNKMR 396

Length = 542
>gnl|CDD|215843 pfam00295, Glyco_hydro_28, Glycosyl hydrolases family 28 Back     alignment and domain information
>gnl|CDD|178580 PLN03003, PLN03003, Probable polygalacturonase At3g15720 Back     alignment and domain information
>gnl|CDD|177865 PLN02218, PLN02218, polygalacturonase ADPG Back     alignment and domain information
>gnl|CDD|215426 PLN02793, PLN02793, Probable polygalacturonase Back     alignment and domain information
>gnl|CDD|215120 PLN02188, PLN02188, polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>gnl|CDD|215540 PLN03010, PLN03010, polygalacturonase Back     alignment and domain information
>gnl|CDD|165802 PLN02155, PLN02155, polygalacturonase Back     alignment and domain information
>gnl|CDD|221728 pfam12708, Pectate_lyase_3, Pectate lyase superfamily protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 480
PLN02793443 Probable polygalacturonase 100.0
PLN02155394 polygalacturonase 100.0
PLN02218431 polygalacturonase ADPG 100.0
PLN02188404 polygalacturonase/glycoside hydrolase family prote 100.0
PLN03003456 Probable polygalacturonase At3g15720 100.0
PLN03010409 polygalacturonase 100.0
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 100.0
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 100.0
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 99.95
PLN03003456 Probable polygalacturonase At3g15720 99.91
PLN02793443 Probable polygalacturonase 99.9
PLN03010409 polygalacturonase 99.89
PLN02218431 polygalacturonase ADPG 99.89
PLN02155394 polygalacturonase 99.88
PLN02188404 polygalacturonase/glycoside hydrolase family prote 99.88
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 99.87
PF00295326 Glyco_hydro_28: Glycosyl hydrolases family 28; Int 99.83
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 99.8
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.64
COG5434542 PGU1 Endopygalactorunase [Cell envelope biogenesis 99.47
TIGR03805314 beta_helix_1 parallel beta-helix repeat-containing 99.28
TIGR03808455 RR_plus_rpt_1 twin-arg-translocated uncharacterize 98.8
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.77
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.7
PF03718582 Glyco_hydro_49: Glycosyl hydrolase family 49; Inte 98.6
PF12541277 DUF3737: Protein of unknown function (DUF3737) ; I 98.59
PF13229158 Beta_helix: Right handed beta helix region; PDB: 2 98.48
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.38
PF05048236 NosD: Periplasmic copper-binding protein (NosD); I 98.36
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 98.33
PLN02480343 Probable pectinesterase 98.3
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 98.21
smart00656190 Amb_all Amb_all domain. 98.14
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.13
smart00656190 Amb_all Amb_all domain. 98.08
COG3866345 PelB Pectate lyase [Carbohydrate transport and met 98.07
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 98.07
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.85
PLN02682369 pectinesterase family protein 97.83
PF12708225 Pectate_lyase_3: Pectate lyase superfamily protein 97.82
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.75
PLN02634359 probable pectinesterase 97.74
PLN02176340 putative pectinesterase 97.72
PLN02773317 pectinesterase 97.63
PLN02497331 probable pectinesterase 97.52
PRK10531422 acyl-CoA thioesterase; Provisional 97.48
PLN02432293 putative pectinesterase 97.47
PLN02170529 probable pectinesterase/pectinesterase inhibitor 97.44
PLN02665366 pectinesterase family protein 97.42
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 97.39
PF01095298 Pectinesterase: Pectinesterase; InterPro: IPR00007 97.37
PF00544200 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pe 97.35
PLN02933530 Probable pectinesterase/pectinesterase inhibitor 97.34
PLN02713566 Probable pectinesterase/pectinesterase inhibitor 97.33
PLN02506537 putative pectinesterase/pectinesterase inhibitor 97.33
PLN02201520 probable pectinesterase/pectinesterase inhibitor 97.29
PLN02468565 putative pectinesterase/pectinesterase inhibitor 97.28
PLN02217670 probable pectinesterase/pectinesterase inhibitor 97.26
PLN02304379 probable pectinesterase 97.25
PLN03043538 Probable pectinesterase/pectinesterase inhibitor; 97.18
PLN02301548 pectinesterase/pectinesterase inhibitor 97.17
PLN02671359 pectinesterase 97.15
PLN02916502 pectinesterase family protein 97.14
PLN02745596 Putative pectinesterase/pectinesterase inhibitor 97.13
PLN02484587 probable pectinesterase/pectinesterase inhibitor 97.12
PLN02995539 Probable pectinesterase/pectinesterase inhibitor 97.05
PLN02313587 Pectinesterase/pectinesterase inhibitor 97.05
PLN02314586 pectinesterase 97.04
COG3420408 NosD Nitrous oxidase accessory protein [Inorganic 97.01
PLN02197588 pectinesterase 97.0
PLN02416541 probable pectinesterase/pectinesterase inhibitor 96.99
PLN02488509 probable pectinesterase/pectinesterase inhibitor 96.89
PLN02990572 Probable pectinesterase/pectinesterase inhibitor 96.81
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 96.7
PF1221867 End_N_terminal: N terminal extension of bacterioph 96.67
COG4677405 PemB Pectin methylesterase [Carbohydrate transport 95.85
PF01696386 Adeno_E1B_55K: Adenovirus EB1 55K protein / large 95.77
PRK10123464 wcaM putative colanic acid biosynthesis protein; P 95.35
PF09251549 PhageP22-tail: Salmonella phage P22 tail-spike; In 94.69
PF07602246 DUF1565: Protein of unknown function (DUF1565); In 94.54
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 93.54
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 92.1
PF03211215 Pectate_lyase: Pectate lyase; InterPro: IPR004898 92.07
TIGR0380444 para_beta_helix parallel beta-helix repeat (two co 91.64
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 90.57
PLN02773317 pectinesterase 90.05
PF14592425 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OF 87.11
PLN02480343 Probable pectinesterase 87.05
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 84.84
PF08480198 Disaggr_assoc: Disaggregatase related; InterPro: I 83.59
PLN02682369 pectinesterase family protein 83.21
PLN02170529 probable pectinesterase/pectinesterase inhibitor 82.79
PLN02665366 pectinesterase family protein 82.09
PLN02698497 Probable pectinesterase/pectinesterase inhibitor 81.55
PLN02708553 Probable pectinesterase/pectinesterase inhibitor 80.34
>PLN02793 Probable polygalacturonase Back     alignment and domain information 
Probab=100.00  E-value=1.4e-72  Score=576.45  Aligned_cols=363  Identities=23%  Similarity=0.429  Sum_probs=320.8

Q ss_pred             CceeEEEeecCcCCCCcchhHHHHHHHHH-HhhhcccCCCcEEEeCCC-eeeeeeecc----cccceEEEeeCcEEEecC
Q 011659           49 RAHSASLEEFGGVGDGTTSNTKAFKAAID-HLSRFQSEGGSQLFVPPG-KWLTGSFNL----TSHFTLFLHKDAVLLASQ  122 (480)
Q Consensus        49 ~~~~~nV~dfGA~gDg~tddT~Aiq~Ai~-~~~~~~~~~g~~v~iP~G-~Y~~~~l~l----~sn~~l~~~~ga~i~~~~  122 (480)
                      .+.++||+||||+|||.+|||+|||+||+ +|++   .+|++|+||+| +|+++++.|    ||+++|+++  ++|+++.
T Consensus        49 ~~~~~~V~dfGA~gDG~tddT~Aiq~Ai~~aC~~---~ggg~v~vP~G~~fl~~~i~l~gpcks~vtL~l~--g~l~~~~  123 (443)
T PLN02793         49 SERVLHVGDFGAKGDGVTDDTQAFKEAWKMACSS---KVKTRIVIPAGYTFLVRPIDLGGPCKAKLTLQIS--GTIIAPK  123 (443)
T ss_pred             CceEEEhhhcccCCCCCCccHHHHHHHHHHHhcc---CCCCEEEECCCceEEEEEEEECCccCCCeEEEEE--EEEEccC
Confidence            45799999999999999999999999999 5654   67899999999 599999999    899999996  8999999


Q ss_pred             CCCCCCCCCCCCCCCccccCCCCcceeeEEEeceeceEEeCccceEeCCChhhhhhhcc---CCCCcCCCeEEEEEeeec
Q 011659          123 DEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRA---GELKYTRPYLIEIMYSQN  199 (480)
Q Consensus       123 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~nv~I~G~~G~idG~g~~~w~~~~~---~~~~~~~p~~i~~~~~~n  199 (480)
                      ++++|+...               ...|+++.+.+|++|+|. |+|||+|+.||.....   ......||++|.|.+|+|
T Consensus       124 d~~~w~~~~---------------~~~~i~~~~~~ni~ItG~-G~IDG~G~~ww~~~~~~~~~~~~~~rP~~i~f~~~~n  187 (443)
T PLN02793        124 DPDVWKGLN---------------PRKWLYFHGVNHLTVEGG-GTVNGMGHEWWAQSCKINHTNPCRHAPTAITFHKCKD  187 (443)
T ss_pred             ChHHccCCC---------------CceEEEEecCceEEEEec-eEEECCCcccccccccccCCCCccCCceEEEEEeecc
Confidence            998886421               236899999999999996 9999999999975321   112245899999999999


Q ss_pred             EEEEeEEEEeCCCceEEEeccccEEEEeEEEECCCCCCCCCeEecCCCccEEEEecEEeeCCceeeecCCCCccCcccCC
Q 011659          200 IQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGM  279 (480)
Q Consensus       200 v~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gdD~iai~sg~~~~g~~~~~  279 (480)
                      ++|++++++|+|+|++++..|+|++|++++|.++..++|+||||+.+|+||+|+||+|.++||||++|++          
T Consensus       188 v~v~gitl~nSp~~~i~~~~~~nv~i~~l~I~~p~~spNTDGIdi~~s~nV~I~n~~I~~gDDcIaik~~----------  257 (443)
T PLN02793        188 LRVENLNVIDSQQMHIAFTNCRRVTISGLKVIAPATSPNTDGIHISASRGVVIKDSIVRTGDDCISIVGN----------  257 (443)
T ss_pred             EEEECeEEEcCCCeEEEEEccCcEEEEEEEEECCCCCCCCCcEeeeccceEEEEeCEEeCCCCeEEecCC----------
Confidence            9999999999999999999999999999999999889999999999999999999999999999999986          


Q ss_pred             CceeEEEEEEEEeCCCcceEEEcccc----cCceeEEEEEeeEEeCCCceEEEEeecCCCCceecEEEEeeEecccceeE
Q 011659          280 PTKQLIIRRLTCISPFSAVIALGSEM----SGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDVYVRRMTMKTMKWAF  355 (480)
Q Consensus       280 ~~~ni~I~n~~~~~~~~~gi~igs~~----~~~v~nI~v~n~~~~~~~~Gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i  355 (480)
                       ++||+|+||+|..+  |||+|||++    .++++||+|+||+|.++.+|++||||.+++|.|+||+|+|++|+++.+||
T Consensus       258 -s~nI~I~n~~c~~G--hGisIGSlg~~~~~~~V~nV~v~n~~~~~t~~GirIKt~~g~~G~v~nItf~ni~m~nv~~pI  334 (443)
T PLN02793        258 -SSRIKIRNIACGPG--HGISIGSLGKSNSWSEVRDITVDGAFLSNTDNGVRIKTWQGGSGNASKITFQNIFMENVSNPI  334 (443)
T ss_pred             -cCCEEEEEeEEeCC--ccEEEecccCcCCCCcEEEEEEEccEEeCCCceEEEEEeCCCCEEEEEEEEEeEEEecCCceE
Confidence             89999999999753  799999974    46799999999999999999999999988899999999999999999999


Q ss_pred             EEEeecCCCCCCCCCCCCCCeEEeEEEEEeEEecc-ceeEEEeccCCCCeeeEEEEeEEEEecCCCCccceeEeeeeccC
Q 011659          356 WITGSYGSHPDNNYDPHALPVIQNINYRDMVAENV-TMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGIS  434 (480)
Q Consensus       356 ~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~-~~~~~i~g~~~~~i~~i~~~ni~~~~~~~~~~~~~~c~~~~~~~  434 (480)
                      .|++.|+.....+..+...+.|+||+|+||+++.. +.++.|.|+++.||+||+|+||+++..+.+ ...+.|.|+++..
T Consensus       335 ~I~q~Y~~~~~~~~~~ts~v~I~nI~~~nI~Gt~~~~~ai~l~cs~~~pc~ni~l~nI~l~~~~g~-~~~~~C~n~~g~~  413 (443)
T PLN02793        335 IIDQYYCDSRKPCANQTSAVKVENISFVHIKGTSATEEAIKFACSDSSPCEGLYLEDVQLLSSTGD-FTESFCWEAYGSS  413 (443)
T ss_pred             EEEeeecCCCCCCCCCCCCeEEEeEEEEEEEEEEcccccEEEEeCCCCCEeeEEEEeeEEEecCCC-CCCcEEEccEEeE
Confidence            99999976433222334456899999999999986 568999999999999999999999976433 5578999999988


Q ss_pred             -CcccCCCCCCCC
Q 011659          435 -SGVTPKPCELLP  446 (480)
Q Consensus       435 -~~~~p~~~~~~~  446 (480)
                       +.+.|.||+...
T Consensus       414 ~~~~~p~~C~~~~  426 (443)
T PLN02793        414 SGQVYPPPCFSDS  426 (443)
T ss_pred             CCeEcCCccccCC
Confidence             558899998653

>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PLN03003 Probable polygalacturonase At3g15720 Back     alignment and domain information
>PLN02793 Probable polygalacturonase Back     alignment and domain information
>PLN03010 polygalacturonase Back     alignment and domain information
>PLN02218 polygalacturonase ADPG Back     alignment and domain information
>PLN02155 polygalacturonase Back     alignment and domain information
>PLN02188 polygalacturonase/glycoside hydrolase family protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>PF00295 Glyco_hydro_28: Glycosyl hydrolases family 28; InterPro: IPR000743 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>COG5434 PGU1 Endopygalactorunase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein Back     alignment and domain information
>TIGR03808 RR_plus_rpt_1 twin-arg-translocated uncharacterized repeat protein Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF03718 Glyco_hydro_49: Glycosyl hydrolase family 49; InterPro: IPR005192 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12541 DUF3737: Protein of unknown function (DUF3737) ; InterPro: IPR022208 This family of proteins is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>smart00656 Amb_all Amb_all domain Back     alignment and domain information
>COG3866 PelB Pectate lyase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02634 probable pectinesterase Back     alignment and domain information
>PLN02176 putative pectinesterase Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PLN02497 probable pectinesterase Back     alignment and domain information
>PRK10531 acyl-CoA thioesterase; Provisional Back     alignment and domain information
>PLN02432 putative pectinesterase Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01095 Pectinesterase: Pectinesterase; InterPro: IPR000070 Pectinesterase 3 Back     alignment and domain information
>PF00544 Pec_lyase_C: Pectate lyase; InterPro: IPR002022 Pectate lyase 4 Back     alignment and domain information
>PLN02933 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02713 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02506 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02201 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02468 putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02217 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02304 probable pectinesterase Back     alignment and domain information
>PLN03043 Probable pectinesterase/pectinesterase inhibitor; Provisional Back     alignment and domain information
>PLN02301 pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02671 pectinesterase Back     alignment and domain information
>PLN02916 pectinesterase family protein Back     alignment and domain information
>PLN02745 Putative pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02484 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02995 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02313 Pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02314 pectinesterase Back     alignment and domain information
>COG3420 NosD Nitrous oxidase accessory protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02197 pectinesterase Back     alignment and domain information
>PLN02416 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02488 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02990 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PF12218 End_N_terminal: N terminal extension of bacteriophage endosialidase; InterPro: IPR024429 This entry represents the N-terminal extension domain of endosialidases which is approximately 70 amino acids in length Back     alignment and domain information
>COG4677 PemB Pectin methylesterase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01696 Adeno_E1B_55K: Adenovirus EB1 55K protein / large t-antigen; InterPro: IPR002612 This family consists of adenovirus E1B 55 kDa protein or large t-antigen Back     alignment and domain information
>PRK10123 wcaM putative colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>PF09251 PhageP22-tail: Salmonella phage P22 tail-spike; InterPro: IPR015331 This entry is represented by the Bacteriophage P22, Gp9, tailspike protein (TSP) Back     alignment and domain information
>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF03211 Pectate_lyase: Pectate lyase; InterPro: IPR004898 Pectate lyase is responsible for the maceration and soft-rotting of plant tissue Back     alignment and domain information
>TIGR03804 para_beta_helix parallel beta-helix repeat (two copies) Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PLN02773 pectinesterase Back     alignment and domain information
>PF14592 Chondroitinas_B: Chondroitinase B; PDB: 1OFM_A 1OFL_A 1DBO_A 1DBG_A Back     alignment and domain information
>PLN02480 Probable pectinesterase Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PF08480 Disaggr_assoc: Disaggregatase related; InterPro: IPR013687 The members of this family are disaggregatases and several hypothetical proteins of the archaeal genus Methanosarcina Back     alignment and domain information
>PLN02682 pectinesterase family protein Back     alignment and domain information
>PLN02170 probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02665 pectinesterase family protein Back     alignment and domain information
>PLN02698 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information
>PLN02708 Probable pectinesterase/pectinesterase inhibitor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
3jur_A448 The Crystal Structure Of A Hyperthermoactive Exopol 1e-45
1bhe_A376 Polygalacturonase From Erwinia Carotovora Ssp. Caro 1e-18
2uve_A608 Structure Of Yersinia Enterocolitica Family 28 Exop 2e-12
1ia5_A339 Polygalacturonase From Aspergillus Aculeatus Length 3e-10
1hg8_A349 Endopolygalacturonase From The Phytopathogenic Fung 1e-06
2iq7_A339 Crystal Structure Of The Polygalacturonase From Col 1e-04
1nhc_A336 Structural Insights Into The Processivity Of Endopo 3e-04
>pdb|3JUR|A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima Length = 448 Back     alignment and structure 
Iteration: 1

 Score =  181 bits (458), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 123/403 (30%), Positives = 202/403 (50%), Gaps = 55/403 (13%)
Query: 51  HSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFVPPGKWLTGSFNLTSHFTL 110
              +L +FG  GDG T  +++FK AI+ LS+   +GG +L VP G +LTG  +L S+  L
Sbjct: 26  REVNLLDFGARGDGRTDCSESFKRAIEELSK---QGGGRLIVPEGVFLTGPIHLKSNIEL 82
Query: 111 FLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDG 170
            + K  +      E+  PV+       R    E   YS L++  +  +V ITG +G +DG
Sbjct: 83  HV-KGTIKFIPDPERYLPVV-----LTRFEGIELYNYSPLVYALDCENVAITG-SGVLDG 135
Query: 171 QG--ELWW---------------------RKFRA-------------GELKYTRPYLIEI 194
               E WW                     +K +              G+  Y RP  ++ 
Sbjct: 136 SADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPSFVQF 195
Query: 195 MYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIED 254
              +N+ +  + +INSP W +HPV S +VI++ I I +  T PN DGI+P+SC    IE 
Sbjct: 196 YRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISS--TGPNNDGIDPESCKYMLIEK 253
Query: 255 CYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFS-AVIALGSEMSGGIQDVR 313
           C   +GDD V +KSG D  G   G+P++ +++R    IS  S   + +GSEMSGG+++V 
Sbjct: 254 CRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVV 313
Query: 314 AEDITAIDSESGVRIKTAVGRGGFVKDV-YVRRMTMKTMKWAFWITGSYGSHPDNNYDPH 372
           A +   ++ E  +R+KT   RGG+++++ ++  + +   +    I   Y     +N +  
Sbjct: 314 ARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRY-----DNEEGE 368
Query: 373 ALPVIQNINYRDMVAENVTMAARLEGIAGDPFTGICISNVTIE 415
            LPV++++  +++ A     A R+EG+  D    I IS+  IE
Sbjct: 369 YLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIE 411
>pdb|1BHE|A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora Length = 376 Back     alignment and structure
>pdb|2UVE|A Chain A, Structure Of Yersinia Enterocolitica Family 28 Exopolygalacturonase Length = 608 Back     alignment and structure
>pdb|1IA5|A Chain A, Polygalacturonase From Aspergillus Aculeatus Length = 339 Back     alignment and structure
>pdb|1HG8|A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme Length = 349 Back     alignment and structure
>pdb|2IQ7|A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins Length = 339 Back     alignment and structure
>pdb|1NHC|A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger Length = 336 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 1e-139
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 1e-137
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 1e-129
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 4e-78
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 5e-78
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 2e-75
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 4e-75
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 3e-71
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 3e-69
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 3e-64
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 1e-53
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 1e-49
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 4e-42
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 3e-39
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 2e-35
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 1e-32
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 4e-12
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 9e-09
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 5e-05
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 4e-04
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Length = 448 Back     alignment and structure
 Score =  406 bits (1045), Expect = e-139
 Identities = 121/443 (27%), Positives = 199/443 (44%), Gaps = 57/443 (12%)

Query: 47  SCRAHSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFVPPGKWLTGSFNLTS 106
                  +L +FG  GDG T  +++FK AI+ LS    +GG +L VP G +LTG  +L S
Sbjct: 22  QIPDREVNLLDFGARGDGRTDCSESFKRAIEELS---KQGGGRLIVPEGVFLTGPIHLKS 78

Query: 107 HFTLFLHKDAVLLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNG 166
           +  L +     +    D + +  +       R    E   YS L++  +  +V ITG +G
Sbjct: 79  NIELHV--KGTIKFIPDPERYLPVV----LTRFEGIELYNYSPLVYALDCENVAITG-SG 131

Query: 167 TIDGQG--ELWWRKFR----------------------------------AGELKYTRPY 190
            +DG    E WW                                       G+  Y RP 
Sbjct: 132 VLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMAERGTPVEERVFGKGHYLRPS 191

Query: 191 LIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNT 250
            ++    +N+ +  + +INSP W +HPV S +VI++ I I +    PN DGI+P+SC   
Sbjct: 192 FVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYM 249

Query: 251 RIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFS-AVIALGSEMSGGI 309
            IE C   +GDD V +KSG D  G   G+P++ +++R    IS  S   + +GSEMSGG+
Sbjct: 250 LIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGV 309

Query: 310 QDVRAEDITAIDSESGVRIKTAVGRGGFVKDVYVRRMTMK-TMKWAFWITGSYGSHPDNN 368
           ++V A +   ++ E  +R+KT   RGG++++++          +    I   Y +     
Sbjct: 310 RNVVARNNVYMNVERALRLKTNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEEGE- 368

Query: 369 YDPHALPVIQNINYRDMVAENVTMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCT 428
                LPV++++  +++ A     A R+EG+  D    I IS+  IE       L++   
Sbjct: 369 ----YLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDILISDTIIEGAKISVLLEFGQL 424

Query: 429 DITGISSGVTPKPCELLPDHEPA 451
            +  +   +     E L     A
Sbjct: 425 GMENVI--MNGSRFEKLYIEGKA 445
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Length = 376 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Length = 608 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Length = 339 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Length = 362 Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Length = 464 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Length = 422 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Length = 339 Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Length = 336 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Length = 349 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Length = 335 Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Length = 600 Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Length = 377 Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Length = 609 Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Length = 549 Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Length = 574 Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Length = 514 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Length = 758 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 100.0
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 100.0
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 100.0
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 100.0
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 100.0
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 100.0
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 100.0
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 100.0
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 100.0
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 100.0
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 100.0
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 100.0
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 100.0
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 100.0
1h80_A464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 100.0
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 100.0
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 100.0
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.98
3eqn_A 758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.91
3jur_A448 EXO-poly-alpha-D-galacturonosidase; beta-helix, ce 99.89
1czf_A362 Polygalacturonase II; beta helix, hydrolase; HET: 99.88
1ia5_A339 Polygalacturonase; glycosylhydrolase, hydrolase; H 99.88
2iq7_A339 Endopolygalacturonase; parallel beta helix, hydrol 99.88
1nhc_A336 Polygalacturonase I; beta-helix, hydrolase; HET: M 99.87
1rmg_A422 Rgase A, rhamnogalacturonase A; hydrolase, inverti 99.86
1k5c_A335 Endopolygalacturonase; beta helical structure, gly 99.86
1hg8_A349 Endopolygalacturonase; hydrolase, pectin degradati 99.86
1bhe_A376 PEHA, polygalacturonase; family 28 glycosyl hydrol 99.85
2uvf_A608 Exopolygalacturonase; GH28, pectin, cell WALL, hyd 99.85
1ogo_X574 Dextranase; hydrolase, dextran degradation, glycos 99.69
1x0c_A549 Isopullulanase; glycoside hydrolase family 49, gly 99.68
2inu_A410 Insulin fructotransferase; right-handed parallel b 99.57
1h80_A 464 IOTA-carrageenase; hydrolase, IOTA-carrageenan dou 99.56
3gq8_A 609 Preneck appendage protein; beta helix, viral prote 99.41
3gqn_A 772 Preneck appendage protein; beta helix, beta barrel 99.38
2x6w_A 600 Tail spike protein; viral protein, beta-helix, hyd 99.34
2pyg_A377 Poly(beta-D-mannuronate) C5 epimerase 4; beta-heli 99.3
3eqn_A758 Glucan 1,3-beta-glucosidase; tandem beta-helix dom 99.25
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 99.18
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 99.07
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 98.64
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 98.63
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 98.57
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 98.51
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.51
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.47
1pxz_A346 Major pollen allergen JUN A 1; parallel beta-helix 98.42
2x3h_A542 K5 lyase, K5A lyase; bacteriophage, glycosaminogly 98.4
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 98.38
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 98.35
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 98.29
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 98.2
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.18
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 98.17
3zsc_A340 Pectate trisaccharide-lyase; hydrolase; HET: ADA A 98.1
1air_A353 Pectate lyase C, PELC; pectate cleavage, pectinoly 98.03
2inu_A410 Insulin fructotransferase; right-handed parallel b 98.01
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 98.0
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 97.9
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.89
1ru4_A400 Pectate lyase, PEL9A; parallel beta-helix; 1.60A { 97.86
1vbl_A416 Pectate lyase 47; PL 47, thermostable, bacillus su 97.74
1idk_A359 Pectin lyase A; signal, glycoprotein, multigene fa 97.73
3vmv_A326 Pectate lyase; polysaccharide lyase family 1, beta 97.67
1qcx_A359 Pectin lyase B; beta-helix protein, plant cell WAL 97.66
2o04_A399 Pectate lyase, PL; hexasaccharide compound II, cal 97.63
1pcl_A355 Pectate lyase E; lyase (acting on polysaccharides) 97.6
2qy1_A330 Pectate lyase II; GAG lyase; 1.90A {Xanthomonas ca 97.45
2vbk_A514 Tailspike-protein; viral adhesion protein, viral p 97.26
3grh_A422 YBHC, acyl-COA thioester hydrolase YBGC; beta-heli 97.05
1pe9_A361 Pectate lyase A; parallel beta helix; 1.60A {Erwin 96.65
1dbg_A506 Chondroitinase B; beta helix, polysaccharide lyase 96.07
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 95.71
3t9g_A196 Pectate lyase; PL3, parallel beta-helix; HET: GOL; 94.92
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 94.34
1gq8_A319 Pectinesterase; hydrolase, carboxylic ester hydrol 94.22
1xg2_A317 Pectinesterase 1; protein-protein complex, beta he 93.79
3b4n_A344 Endo-pectate lyase; pectin, galacturonic acid, rig 93.14
1ee6_A197 Pectate lyase; parallel beta-helix, high-alkaline, 92.02
3riq_A543 Tailspike protein; right handed beta-helix, endorh 91.86
2nsp_A342 Pectinesterase A; michaelis complex, hydrolase; HE 88.0
3uw0_A364 Pectinesterase; right-handed beta-helix, carbohydr 87.56
3ju4_A 670 Endo-N-acetylneuraminidase; endonf, polysia, high- 85.33
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=2.3e-69  Score=557.35  Aligned_cols=352  Identities=33%  Similarity=0.603  Sum_probs=313.9

Q ss_pred             cCceeEEEeecCcCCCCcchhHHHHHHHHHHhhhcccCCCcEEEeCCCeeeeeeecccccceEEEeeCcEEEecCCCCCC
Q 011659           48 CRAHSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFVPPGKWLTGSFNLTSHFTLFLHKDAVLLASQDEKEW  127 (480)
Q Consensus        48 ~~~~~~nV~dfGA~gDg~tddT~Aiq~Ai~~~~~~~~~~g~~v~iP~G~Y~~~~l~l~sn~~l~~~~ga~i~~~~~~~~~  127 (480)
                      .++.++||+||||+|||.+|||+|||+||++|++   .+|++|+||+|+|++++|.|+|+++|+++  |+|++++++++|
T Consensus        23 ~~~~~~~v~~~GA~gdg~tddt~Aiq~Ai~~c~~---~ggg~v~vP~G~yl~~~l~l~s~v~l~l~--gtL~~s~d~~~y   97 (448)
T 3jur_A           23 IPDREVNLLDFGARGDGRTDCSESFKRAIEELSK---QGGGRLIVPEGVFLTGPIHLKSNIELHVK--GTIKFIPDPERY   97 (448)
T ss_dssp             CCSCEEEGGGGTCCCEEEEECHHHHHHHHHHHHH---HTCEEEEECSSEEEESCEECCTTEEEEES--SEEEECCCGGGG
T ss_pred             CCCcEEEEEecccCCCCCeecHHHHHHHHHhhhh---cCCeEEEECCCcEEEeeeEeCCCcEEEEE--EEEEecCCHHHh
Confidence            4667999999999999999999999999999876   68999999999999999999999999997  999999999998


Q ss_pred             -CCCCCCCCCCccccCCCCcceeeEEEeceeceEEeCccceEeCCC--hhhhhhhccC----------------------
Q 011659          128 -PVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQG--ELWWRKFRAG----------------------  182 (480)
Q Consensus       128 -~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~nv~I~G~~G~idG~g--~~~w~~~~~~----------------------  182 (480)
                       |...   ..++|.+.  ..+.+||++.+++||+|+|. |+|||+|  +.||.+....                      
T Consensus        98 ~p~~~---~~~~G~~~--~~~~~lI~~~~~~ni~ItG~-GtIDG~G~~~~ww~~~~~~~~~~~~~~~~~~~~~~~l~~~~  171 (448)
T 3jur_A           98 LPVVL---TRFEGIEL--YNYSPLVYALDCENVAITGS-GVLDGSADNEHWWPWKGKKDFGWKEGLPNQQEDVKKLKEMA  171 (448)
T ss_dssp             CSCEE---EEETTEEE--EESCCSEEEESCEEEEEESS-CEEECCCBTTBBGGGGCCGGGTCCTTSCCSHHHHHHHHHHH
T ss_pred             Ccccc---cccccccc--cCccceEEEeCcEeeEEEEe-EEEECCCCchhhhhhcccccccccccccccccchhhhhhhh
Confidence             4321   12333321  23467999999999999996 9999999  8899754310                      


Q ss_pred             ------------CCCcCCCeEEEEEeeecEEEEeEEEEeCCCceEEEeccccEEEEeEEEECCCCCCCCCeEecCCCccE
Q 011659          183 ------------ELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNT  250 (480)
Q Consensus       183 ------------~~~~~~p~~i~~~~~~nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV  250 (480)
                                  .....||++|.|.+|+|++|++++++|+|+|++++..|+|++|++++|.++  ++|+||||+.+|+||
T Consensus       172 ~~~~p~~~~~~~~~~~~RP~~i~~~~~~nv~i~giti~nsp~~~i~~~~~~nv~i~~v~I~~~--~~NtDGidi~~s~nV  249 (448)
T 3jur_A          172 ERGTPVEERVFGKGHYLRPSFVQFYRCRNVLVEGVKIINSPMWCIHPVLSENVIIRNIEISST--GPNNDGIDPESCKYM  249 (448)
T ss_dssp             HHTCCGGGCBCSTTCCCCCCSEEEESCEEEEEESCEEESCSSCSEEEESCEEEEEESCEEEEC--STTCCSBCCBSCEEE
T ss_pred             cccCcchhhhccccccCCceEEEEEcccceEEEeeEEEeCCCceEeeeccCCEEEEeEEEeec--cCCCccccccCCcCE
Confidence                        123578999999999999999999999999999999999999999999987  689999999999999


Q ss_pred             EEEecEEeeCCceeeecCCCCccCcccCCCceeEEEEEEEEeCCCc-ceEEEcccccCceeEEEEEeeEEeCCCceEEEE
Q 011659          251 RIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLIIRRLTCISPFS-AVIALGSEMSGGIQDVRAEDITAIDSESGVRIK  329 (480)
Q Consensus       251 ~I~n~~i~~gdD~iai~sg~~~~g~~~~~~~~ni~I~n~~~~~~~~-~gi~igs~~~~~v~nI~v~n~~~~~~~~Gi~i~  329 (480)
                      +|+||+|.++||||+++++++.+|...+.|++||+|+||+|++..+ +||+|||++.++++||+|+||+|.++.+|++||
T Consensus       250 ~I~n~~i~~gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~~~~~gh~gisiGS~~~~~v~nV~v~n~~~~~t~~GirIK  329 (448)
T 3jur_A          250 LIEKCRFDTGDDSVVIKSGRDADGRRIGVPSEYILVRDNLVISQASHGGLVIGSEMSGGVRNVVARNNVYMNVERALRLK  329 (448)
T ss_dssp             EEESCEEEESSEEEEEBCCCHHHHHHHCCCEEEEEEESCEEECSSCSEEEEECSSCTTCEEEEEEESCEEESCSEEEEEE
T ss_pred             EEEeeEEEeCCCcEEeccCccccccccCCCceeEEEEEeEEecCCCcceEEECCcccCcEEEEEEEEEEEecccceEEEE
Confidence            9999999999999999999988888888999999999999954333 499999999999999999999999999999999


Q ss_pred             eecCCCCceecEEEEeeEecccceeE-EEEeecCCCCCCCCCCCCCCeEEeEEEEEeEEeccceeEEEeccCCCCeeeEE
Q 011659          330 TAVGRGGFVKDVYVRRMTMKTMKWAF-WITGSYGSHPDNNYDPHALPVIQNINYRDMVAENVTMAARLEGIAGDPFTGIC  408 (480)
Q Consensus       330 s~~~~~g~v~nI~~~ni~~~~~~~~i-~i~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~~~~~~i~g~~~~~i~~i~  408 (480)
                      |+.+++|.|+||+|+|++|+++.+|+ .|++.|+...     +...+.|+||+|+||++++.+.++.|.|+++.||++|+
T Consensus       330 t~~g~gG~v~nI~f~ni~m~~v~~~~i~I~~~Y~~~~-----~~~~~~i~nI~~~NI~~t~~~~~i~i~g~~~~p~~~I~  404 (448)
T 3jur_A          330 TNSRRGGYMENIFFIDNVAVNVSEEVIRINLRYDNEE-----GEYLPVVRSVFVKNLKATGGKYAVRIEGLENDYVKDIL  404 (448)
T ss_dssp             CCTTTCSEEEEEEEESCEEEEESSEEEEEESCGGGCC-----CSCCCEEEEEEEESCEEEECSEEEEEECBTTBCEEEEE
T ss_pred             EEcCCCceEeeEEEEEEEEECCccccEEEEeeccCCC-----CCCCceEEEEEEEeEEEEecceEEEEEeCCCCCEeeEE
Confidence            99988999999999999999999988 9999997541     23346999999999999988889999999999999999


Q ss_pred             EEeEEEEec
Q 011659          409 ISNVTIELT  417 (480)
Q Consensus       409 ~~ni~~~~~  417 (480)
                      |+||+++..
T Consensus       405 ~~nv~i~~~  413 (448)
T 3jur_A          405 ISDTIIEGA  413 (448)
T ss_dssp             EEEEEEESC
T ss_pred             EEEEEEEcc
Confidence            999999975
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima} Back     alignment and structure
>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A* Back     alignment and structure
>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini} Back     alignment and structure
>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3 Back     alignment and structure
>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 Back     alignment and structure
>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A* Back     alignment and structure
>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3 Back     alignment and structure
>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3 Back     alignment and structure
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A* Back     alignment and structure
>1ogo_X Dextranase; hydrolase, dextran degradation, glycosidase; HET: BGC GLC; 1.65A {Penicillium minioluteum} SCOP: b.133.1.1 b.80.1.10 PDB: 1ogm_X* Back     alignment and structure
>1x0c_A Isopullulanase; glycoside hydrolase family 49, glycoprotein, hydro; HET: NAG; 1.70A {Aspergillus niger} PDB: 1wmr_A* 2z8g_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1h80_A IOTA-carrageenase; hydrolase, IOTA-carrageenan double helix degradation; 1.6A {Alteromonas SP} SCOP: b.80.1.8 PDB: 1ktw_A* 3lmw_A Back     alignment and structure
>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A Back     alignment and structure
>2x6w_A Tail spike protein; viral protein, beta-helix, hydrolase; HET: RAM GLC GLA NAG NDG; 1.35A {Enterobacteria phage HK620} PDB: 2vji_A 2vjj_A* 2x85_A* 2x6x_A* 2x6y_A* Back     alignment and structure
>2pyg_A Poly(beta-D-mannuronate) C5 epimerase 4; beta-helix, isomerase; 2.10A {Azotobacter vinelandii} PDB: 2pyh_A* Back     alignment and structure
>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1pxz_A Major pollen allergen JUN A 1; parallel beta-helix, cedar pollen; 1.70A {Juniperus ashei} SCOP: b.80.1.1 Back     alignment and structure
>2x3h_A K5 lyase, K5A lyase; bacteriophage, glycosaminoglycan; 1.60A {Enterobacteria phage k1-5} Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>3zsc_A Pectate trisaccharide-lyase; hydrolase; HET: ADA AQA; 1.94A {Thermotoga maritima} Back     alignment and structure
>1air_A Pectate lyase C, PELC; pectate cleavage, pectinolyitc activity, trans-elimination; 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1o88_A 1o8d_A 1o8e_A 1o8f_A 1o8g_A 1o8h_A 1o8i_A 1o8j_A 1o8k_A 1o8l_A 1o8m_A 1plu_A 2pec_A 2ewe_A* Back     alignment and structure
>2inu_A Insulin fructotransferase; right-handed parallel beta-helix, lyase; 1.80A {Bacillus SP} PDB: 2inv_A* Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1ru4_A Pectate lyase, PEL9A; parallel beta-helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.9 Back     alignment and structure
>1vbl_A Pectate lyase 47; PL 47, thermostable, bacillus subtilis, pectin, calcium ION; 1.91A {Bacillus SP} Back     alignment and structure
>1idk_A Pectin lyase A; signal, glycoprotein, multigene family; 1.93A {Aspergillus niger} SCOP: b.80.1.2 PDB: 1idj_A Back     alignment and structure
>3vmv_A Pectate lyase; polysaccharide lyase family 1, beta-helix, pectolytic, polygalacturonate; 1.54A {Bacillus} PDB: 3vmw_A* Back     alignment and structure
>1qcx_A Pectin lyase B; beta-helix protein, plant cell WALL; 1.70A {Aspergillus niger} SCOP: b.80.1.2 Back     alignment and structure
>2o04_A Pectate lyase, PL; hexasaccharide compound II, calciums; HET: ADA; 1.70A {Bacillus subtilis} PDB: 2nzm_A* 2o0v_A* 2o0w_A 2o17_A* 2o1d_A* 2bsp_A 1bn8_A 3krg_A* Back     alignment and structure
>1pcl_A Pectate lyase E; lyase (acting on polysaccharides); 2.20A {Erwinia chrysanthemi} SCOP: b.80.1.1 Back     alignment and structure
>2qy1_A Pectate lyase II; GAG lyase; 1.90A {Xanthomonas campestris PV} PDB: 2qxz_A 2qx3_A Back     alignment and structure
>2vbk_A Tailspike-protein; viral adhesion protein, viral protein, hydrolase, endorhamnosidase, right-handed parallel beta-helix; 1.25A {Enterobacteria phage SF6} PDB: 2vbe_A 2vbm_A* Back     alignment and structure
>3grh_A YBHC, acyl-COA thioester hydrolase YBGC; beta-helix, periplasmic, lipoprotein, outer membrane, carbohydrate esterase family 8; 1.70A {Escherichia coli k-12} Back     alignment and structure
>1pe9_A Pectate lyase A; parallel beta helix; 1.60A {Erwinia chrysanthemi} SCOP: b.80.1.1 PDB: 1ooc_A 1jta_A 1jrg_A Back     alignment and structure
>1dbg_A Chondroitinase B; beta helix, polysaccharide lyase, dematan sulfate; HET: MAN RAM GCU MXY G4D BGC; 1.70A {Pedobacter heparinus} SCOP: b.80.1.4 PDB: 1dbo_A* 1ofl_A* 1ofm_A* Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>3t9g_A Pectate lyase; PL3, parallel beta-helix; HET: GOL; 1.50A {Caldicellulosiruptor bescii} Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>1gq8_A Pectinesterase; hydrolase, carboxylic ester hydrolase; 1.75A {Daucus carota} SCOP: b.80.1.5 Back     alignment and structure
>1xg2_A Pectinesterase 1; protein-protein complex, beta helix,four helix bundle, hydrolase/hydrolase inhibitor complex; 1.90A {Solanum lycopersicum} Back     alignment and structure
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed parallel beta helix fold; 1.45A {Erwinia chrysanthemi} PDB: 3b8y_A* 3b90_A Back     alignment and structure
>1ee6_A Pectate lyase; parallel beta-helix, high-alkaline, low-molecular-weight; 2.30A {Bacillus SP} SCOP: b.80.1.1 Back     alignment and structure
>3riq_A Tailspike protein; right handed beta-helix, endorhamnosidase, lipopolysaccharide, viral protein; 1.50A {Siphovirus 9na} Back     alignment and structure
>2nsp_A Pectinesterase A; michaelis complex, hydrolase; HET: M8C ADA; 1.70A {Erwinia chrysanthemi} PDB: 2nst_A* 2nt6_A* 2nt9_A* 2ntp_A* 2ntb_A* 2ntq_A* 1qjv_A Back     alignment and structure
>3uw0_A Pectinesterase; right-handed beta-helix, carbohydrate esterase, hydrolase; 3.50A {Yersinia enterocolitica subsp} Back     alignment and structure
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 480
d1bhea_376 b.80.1.3 (A:) Polygalacturonase {Erwinia carotovor 2e-75
d1czfa_335 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 2e-55
d1ia5a_339 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 4e-55
d1nhca_336 b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergill 3e-50
d1rmga_422 b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus a 6e-48
d1hg8a_349 b.80.1.3 (A:) Polygalacturonase {Fusarium monilifo 2e-47
d1ogmx2373 b.80.1.10 (X:202-574) Dextranase, catalytic domain 3e-47
d1k5ca_333 b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum p 2e-41
d1o88a_353 b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, 8e-21
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Length = 376 Back     information, alignment and structure

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

 Score =  239 bits (611), Expect = 2e-75
 Identities = 88/385 (22%), Positives = 152/385 (39%), Gaps = 43/385 (11%)

Query: 61  VGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFVPPGK---WLTGSFNLTSHFTLFLHKDAV 117
           +   +++ T   + A+++  +     G  + +  G    +L+G  +L S  +L + K   
Sbjct: 18  LKADSSTATSTIQKALNNCDQ-----GKAVRLSAGSTSVFLSGPLSLPSGVSLLIDKGVT 72

Query: 118 LLASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWW- 176
           L A  + K +      PS     D  G    + I   + T+  I    GTIDGQG +   
Sbjct: 73  LRAVNNAKSFE---NAPSSCGVVDKNGKGCDAFITAVSTTNSGIY-GPGTIDGQGGVKLQ 128

Query: 177 ----------RKFRAGELKYTRPYLIEIMYSQNIQISNLTLINSPSWNVHPVYSSSVIVQ 226
                        +  +LK   P LI+I  S+N  + N++LINSP+++V           
Sbjct: 129 DKKVSWWELAADAKVKKLKQNTPRLIQINKSKNFTLYNVSLINSPNFHVVFSDGDGFTAW 188

Query: 227 GITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYGMPTKQLII 286
             TI  P T+ NTDGI+P S  N  I    I +GDD VA+K+   +        T+ + I
Sbjct: 189 KTTIKTPSTARNTDGIDPMSSKNITIAYSNIATGDDNVAIKAYKGR------AETRNISI 242

Query: 287 RRLTCISPFSAVIALGSEMSGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDVYVRRM 346
                 +     I      + G+ +V  +D+    + +G+RIK+     G V  V    +
Sbjct: 243 LHNDFGTGHGMSI---GSETMGVYNVTVDDLKMNGTTNGLRIKSDKSAAGVVNGVRYSNV 299

Query: 347 TMKTMKWAFWITGSYGSHPDNNYDPHALPVIQNINYRDMVAENVTMAARLEGIAGDPFTG 406
            MK +     I   Y        +   +P   +I ++D+ +E       L G        
Sbjct: 300 VMKNVAKPIVIDTVYE-----KKEGSNVPDWSDITFKDVTSETK-GVVVLNGENAKKPIE 353

Query: 407 ICISNVTIELTNKPKKLQWNCTDIT 431
           + + NV +          W   ++ 
Sbjct: 354 VTMKNVKLT-----SDSTWQIKNVN 373
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Length = 335 Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Length = 339 Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Length = 336 Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Length = 422 Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Length = 349 Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Length = 373 Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Length = 333 Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Length = 353 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 100.0
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 100.0
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 100.0
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 100.0
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 100.0
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 100.0
d1ia5a_339 Polygalacturonase {Fungus (Aspergillus aculeatus) 99.86
d1hg8a_349 Polygalacturonase {Fusarium moniliforme [TaxId: 11 99.84
d1bhea_376 Polygalacturonase {Erwinia carotovora, subsp. caro 99.82
d1nhca_336 Polygalacturonase {Fungus (Aspergillus niger), end 99.81
d1czfa_335 Polygalacturonase {Fungus (Aspergillus niger), end 99.81
d1rmga_422 Rhamnogalacturonase A {Aspergillus aculeatus [TaxI 99.79
d1k5ca_333 Polygalacturonase {Fungus (Stereum purpureum), end 99.72
d1h80a_464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 99.67
d1ogmx2373 Dextranase, catalytic domain {Penicillium miniolut 99.46
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 98.66
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 98.49
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 98.28
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 98.12
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.98
d1o88a_353 Pectate lyase {Erwinia chrysanthemi, type C [TaxId 97.97
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.88
d1qcxa_359 Pectin lyase {Aspergillus niger, type B [TaxId: 50 97.72
d1pxza_346 Major pollen allergen Jun a 1 {Ozark white cedar ( 97.65
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.57
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.39
d1pcla_355 Pectate lyase {Erwinia chrysanthemi, type E [TaxId 97.35
d1bn8a_399 Pectate lyase {Bacillus subtilis [TaxId: 1423]} 97.29
d1gq8a_319 Pectin methylesterase PemA {Carrot (Daucus carota) 97.26
d1idka_359 Pectin lyase {Aspergillus niger, type A [TaxId: 50 97.26
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 97.2
d1qjva_342 Pectin methylesterase PemA {Erwinia chrysanthemi [ 97.1
d1pe9a_361 Pectate lyase {Erwinia chrysanthemi, type A [TaxId 96.54
d1h80a_ 464 iota-carrageenase {Alteromonas sp., atcc 43554 [Ta 95.82
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 91.1
d1ee6a_197 Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 89.75
d1ru4a_400 Pectate transeliminase {Erwinia chrysanthemi [TaxI 86.08
d1ofla_481 Chondroitinase B {Pedobacter heparinus [TaxId: 984 84.92
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Rhamnogalacturonase A
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=5.5e-60  Score=483.36  Aligned_cols=343  Identities=16%  Similarity=0.244  Sum_probs=293.3

Q ss_pred             cccccccccCceeEEEeecCcCCCCcchhHHHHHHHHHHhhhcccCCCcEEEeCCCeeeee-eecccccceEEEeeCcEE
Q 011659           40 WFEYSAISCRAHSASLEEFGGVGDGTTSNTKAFKAAIDHLSRFQSEGGSQLFVPPGKWLTG-SFNLTSHFTLFLHKDAVL  118 (480)
Q Consensus        40 ~~~~~~~~~~~~~~nV~dfGA~gDg~tddT~Aiq~Ai~~~~~~~~~~g~~v~iP~G~Y~~~-~l~l~sn~~l~~~~ga~i  118 (480)
                      ++......++..++||+||||+|||++|||+|||+||++|.     +|++|+||+|+|++. ++.|+.+..+.++.+++|
T Consensus         8 p~~~~~~~~~~k~~nV~dfGA~gDG~tDdT~Ai~~Ai~ac~-----~gg~V~iP~Gty~l~~~i~l~g~~~~~l~~~G~i   82 (422)
T d1rmga_           8 PLTSASTKGATKTCNILSYGAVADNSTDVGPAITSAWAACK-----SGGLVYIPSGNYALNTWVTLTGGSATAIQLDGII   82 (422)
T ss_dssp             CSSCHHHHHHHCEEEGGGGTCCCSSSSBCHHHHHHHHHHHT-----BTCEEEECSSEEEECSCEEEESCEEEEEEECSEE
T ss_pred             CcccccccCCCcEEEEecCCCCCCCCccCHHHHHHHHHhcC-----CCCEEEECCCcEEEeCcEEEcCCCceEEEEeEEE
Confidence            34444455678899999999999999999999999998773     578999999999765 799987777777778899


Q ss_pred             EecCCCCCCCCCCCCCCCCccccCCCCcceeeEEEeceeceEEeCccceEeCCChhhhhhhccCCCCcCCCeEEEEEeee
Q 011659          119 LASQDEKEWPVIEPLPSYGRGRDTEGGRYSSLIFGTNLTDVVITGDNGTIDGQGELWWRKFRAGELKYTRPYLIEIMYSQ  198 (480)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~nv~I~G~~G~idG~g~~~w~~~~~~~~~~~~p~~i~~~~~~  198 (480)
                      +++.....+.                   ..+....+.+.+.+.|. |+|||+|+.||..      ...+|++++|.+|+
T Consensus        83 ~~~~~~~~~~-------------------~~~~~~~~~~~~~~~g~-G~IdG~G~~~~~~------~~~~p~~l~~~~~~  136 (422)
T d1rmga_          83 YRTGTASGNM-------------------IAVTDTTDFELFSSTSK-GAVQGFGYVYHAE------GTYGARILRLTDVT  136 (422)
T ss_dssp             EECCCCSSEE-------------------EEEEEEEEEEEECSSSC-CEEECCTHHHHTT------TCCCCEEEEEEEEE
T ss_pred             EeccCCccCE-------------------EEeccCccEEEEEeecc-eEEecCcceecCC------CCCCCcEEEEEeee
Confidence            8876443321                   23444556677778885 9999999999964      34678999999999


Q ss_pred             cEEEEeEEEEeCCCceEEEeccccEEEEeEEEECCCCCCCCCeEecCCCccEEEEecEEeeCCceeeecCCCCccCcccC
Q 011659          199 NIQISNLTLINSPSWNVHPVYSSSVIVQGITILAPVTSPNTDGINPDSCTNTRIEDCYIVSGDDCVAVKSGWDQYGIAYG  278 (480)
Q Consensus       199 nv~I~~v~i~ns~~~~i~~~~~~nv~i~~~~i~~~~~~~n~DGI~~~~s~nV~I~n~~i~~gdD~iai~sg~~~~g~~~~  278 (480)
                      |++|++++++|++.|++.+..|++++|+|++|.++. .+|+||||+.+ +||+|+||+|.++||||+++++         
T Consensus       137 n~~i~git~~nsp~~~i~i~~c~~v~i~nv~I~~~~-~~NtDGIdi~~-snv~I~n~~i~~gDDcIaiks~---------  205 (422)
T d1rmga_         137 HFSVHDIILVDAPAFHFTMDTCSDGEVYNMAIRGGN-EGGLDGIDVWG-SNIWVHDVEVTNKDECVTVKSP---------  205 (422)
T ss_dssp             EEEEEEEEEECCSSCSEEEEEEEEEEEEEEEEECCS-STTCCSEEEEE-EEEEEEEEEEESSSEEEEEEEE---------
T ss_pred             eeEEECcEecCCCceEEEEeccccEEEEeeEEcCCC-CCccceEeecc-cEEEEEeeEEEcCCCccccCCC---------
Confidence            999999999999999999999999999999999864 68999999965 6899999999999999999996         


Q ss_pred             CCceeEEEEEEEEeCCCcceEEEcccc-cCceeEEEEEeeEEeCCCceEEEEeecCCCCceecEEEEeeEecccceeEEE
Q 011659          279 MPTKQLIIRRLTCISPFSAVIALGSEM-SGGIQDVRAEDITAIDSESGVRIKTAVGRGGFVKDVYVRRMTMKTMKWAFWI  357 (480)
Q Consensus       279 ~~~~ni~I~n~~~~~~~~~gi~igs~~-~~~v~nI~v~n~~~~~~~~Gi~i~s~~~~~g~v~nI~~~ni~~~~~~~~i~i  357 (480)
                        ++||+|+|++|..+  +|++||++. ...++||+|+||++.++..|++||++.+ .|.|+||+|+|++|+++.+||.|
T Consensus       206 --s~nI~i~n~~c~~g--~GisiGs~g~~~~V~nV~v~n~~~~~s~~g~~ik~~~g-~G~V~nI~f~Ni~~~nv~~pI~I  280 (422)
T d1rmga_         206 --ANNILVESIYCNWS--GGCAMGSLGADTDVTDIVYRNVYTWSSNQMYMIKSNGG-SGTVSNVLLENFIGHGNAYSLDI  280 (422)
T ss_dssp             --EEEEEEEEEEEESS--SEEEEEEECTTEEEEEEEEEEEEEESSSCSEEEEEBBC-CEEEEEEEEEEEEEEEESCSEEE
T ss_pred             --CccEEEEeeEEccc--cceeEeeccCCCCEEEEEEEeEEEeCCCceEEEEEcCC-CceecceEEEEEEEecccccEEE
Confidence              99999999999853  699999975 4569999999999999999999998753 58999999999999999999999


Q ss_pred             EeecCCCCCCCCCCCCCCeEEeEEEEEeEEecc----ceeEEEeccCCCCeeeEEEEeEEEEecCCCCccceeEeeeecc
Q 011659          358 TGSYGSHPDNNYDPHALPVIQNINYRDMVAENV----TMAARLEGIAGDPFTGICISNVTIELTNKPKKLQWNCTDITGI  433 (480)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~i~nIt~~nI~~~~~----~~~~~i~g~~~~~i~~i~~~ni~~~~~~~~~~~~~~c~~~~~~  433 (480)
                      ++.|+.....  .++ ...|+||+|+||+++..    +.++.|.|++..||+||+|+||+++.. ++..+.+.|.|++|.
T Consensus       281 d~~y~~~~~~--~~~-~v~isnIt~~Ni~GT~~~~~~~~~i~l~Cs~~~pc~ni~l~ni~l~~~-~g~~~~~~C~na~G~  356 (422)
T d1rmga_         281 DGYWSSMTAV--AGD-GVQLNNITVKNWKGTEANGATRPPIRVVCSDTAPCTDLTLEDIAIWTE-SGSSELYLCRSAYGS  356 (422)
T ss_dssp             ETBCTTSCCB--SSS-CCEEEEEEEEEEEEEESCTTTSCSEEEECBTTBCEEEEEEEEEEEEES-SSSCEEEEEESEEEE
T ss_pred             ecccCCCCCC--CCC-CeEEEEEEEEeEEEEecCCcccccEEEEcCCCCCCcceEEEEEEEEcC-CCCCcceEEECceee
Confidence            9999765432  123 34899999999999864    468999999999999999999999986 455677999999974
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]} Back     information, alignment and structure
>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]} Back     information, alignment and structure
>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]} Back     information, alignment and structure
>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]} Back     information, alignment and structure
>d1rmga_ b.80.1.3 (A:) Rhamnogalacturonase A {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ogmx2 b.80.1.10 (X:202-574) Dextranase, catalytic domain {Penicillium minioluteum [TaxId: 28574]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1o88a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type C [TaxId: 556]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1qcxa_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type B [TaxId: 5061]} Back     information, alignment and structure
>d1pxza_ b.80.1.1 (A:) Major pollen allergen Jun a 1 {Ozark white cedar (Juniperus ashei) [TaxId: 13101]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1pcla_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type E [TaxId: 556]} Back     information, alignment and structure
>d1bn8a_ b.80.1.1 (A:) Pectate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1gq8a_ b.80.1.5 (A:) Pectin methylesterase PemA {Carrot (Daucus carota) [TaxId: 4039]} Back     information, alignment and structure
>d1idka_ b.80.1.2 (A:) Pectin lyase {Aspergillus niger, type A [TaxId: 5061]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1qjva_ b.80.1.5 (A:) Pectin methylesterase PemA {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1pe9a_ b.80.1.1 (A:) Pectate lyase {Erwinia chrysanthemi, type A [TaxId: 556]} Back     information, alignment and structure
>d1h80a_ b.80.1.8 (A:) iota-carrageenase {Alteromonas sp., atcc 43554 [TaxId: 232]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ee6a_ b.80.1.1 (A:) Pectate lyase {Bacillus sp., strain ksmp15 [TaxId: 1409]} Back     information, alignment and structure
>d1ru4a_ b.80.1.9 (A:) Pectate transeliminase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1ofla_ b.80.1.4 (A:) Chondroitinase B {Pedobacter heparinus [TaxId: 984]} Back     information, alignment and structure