Citrus Sinensis ID: 011661

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
MFRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPPVS
ccEEEEEEcccccccccccccccccccccccccEEEEEcccccccccEEEccEEEccccccccEEEEEEccccEEEEEEccccccccccccEEcccccccccEEEEEEEcccccccEEEcccccccccEEEccEEEEEEccccccccccHHHHHHHHHHHHccccccccccccccccccccEEEEEEEEEEccccccccccEEEEcccccccccccccccccEEEEEEcccccEEEccEEcEEEEEEEEEccEEEEEEEEEEEEEEEccEEEEccEEEEccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccEEEEEEEEccccccccEEEEEEEEcccccccccEEEEEEEEcccccccEEEEcccccccccccccccccccEEEcEEEEEEEEEEEEEEEccccEEEccEEEEEEEccccccccEEEEEEEEEccccc
cccEEEEEccccccccccccccccccccccccccEEccccccccccccEcccEEEccccccccEEEEEEccccEEEEEEEcccccccccccHHHcHccccccEHHHEEcccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEccccccccccEEEEEEccccccEEEEEcccEEEEEEEccccEEEEccccccEEEEEEEEcccEEEEEEccEEEEEcccEEEccEEEEEccccccEEEEEccccccccccccccccccccccccccccHHHHHHccHHHHHHccccccEEEEEccccccccccEcEEEEEccccccccccEEEEEEccccccccccEEEEEEEHHHcccccEEEEcccccccccccccccccccEEEccEcccEEEEEEEEcHHHHEccccEEEEEEEcccccccEEEEEEEEEcccccc
MFRYMViadnrhrqmplpedlstgrgqplaypeavqlvnptdpehqgevddkyqyscenkdlkvhgwicrttpvgfwliipsdefrsggplkqnltshvgptTLAVFLSGHYagkymethigqdepwkkvfGPVFIYlnsaadgddplwLWEDAKIKMMSEvqswpynfpasedfqkseergcvsgrllvqdsndvisangayvglappgdvgswqteckdyqfwttadedgcfsiknirtgnynlyawvpgfvgdyrsDALVTItsgsnikmgdlvyepprdgptlweigipdrsarefnvpdpdpkyvnrlfvnhpdrfrqyglwsrytelypnedlvyTIGVSDYSKDWFFAQVVREMdnktyqgtTWQIKFKLdhvdrnssYKLRVAIASATLAELQVrvndpnanrplfttgligrdnaiaRHGIHGLYLLYhvnipgtrfiegentiflkqprctspfqgimydyirlegppvs
mfrymviadnrhrqmplpeDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITsgsnikmgdlvyEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAElqvrvndpnanrPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIrlegppvs
MFRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPPVS
***************************************************KYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPA**********GCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVP*PDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRL******
MFRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPP**
MFRYMVIADNRHRQMPLP********QPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPPVS
MFRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPP**
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MFRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPPVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query480 2.2.26 [Sep-21-2011]
Q8RJP2578 Rhamnogalacturonate lyase yes no 0.829 0.688 0.264 3e-25
Q5AZ85660 Rhamnogalacturonate lyase yes no 0.885 0.643 0.248 1e-16
B8N5T6663 Probable rhamnogalacturon N/A no 0.831 0.601 0.239 6e-16
Q0C7K7660 Probable rhamnogalacturon N/A no 0.895 0.651 0.230 3e-14
Q4WR79658 Probable rhamnogalacturon no no 0.808 0.589 0.243 3e-12
B0XPA2658 Probable rhamnogalacturon N/A no 0.808 0.589 0.243 3e-12
A5ABH4706 Probable rhamnogalacturon yes no 0.783 0.532 0.238 3e-12
A1D144658 Probable rhamnogalacturon N/A no 0.816 0.595 0.228 3e-11
Q5B5P1 1041 Probable rhamnogalacturon no no 0.625 0.288 0.252 3e-08
Q2U5P7695 Probable rhamnogalacturon no no 0.618 0.427 0.254 1e-07
>sp|Q8RJP2|RHIE_DICD3 Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1 Back     alignment and function desciption
 Score =  117 bits (292), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 181/465 (38%), Gaps = 67/465 (14%)

Query: 22  STGRGQPLAYPEAVQLVNPTDPEHQ---GEVDDKYQYSCENKDLKVHGWICRTTPVGFWL 78
           S  RG PL Y E  QL    D   +   G V  KY ++   ++ +   W       G W+
Sbjct: 172 SIRRGTPLLYDELEQLPKVQDETWRLPDGSVYSKYDFAGYQRESRY--WGVMGNGYGAWM 229

Query: 79  IIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYL 138
           +  S E+ SG  LKQ L  H     L      H+    M    G    ++K++GP  +Y+
Sbjct: 230 VPASGEYYSGDALKQELLVHQDAIILNYLTGSHFGTPDMVAQPG----FEKLYGPWLLYI 285

Query: 139 NSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDVIS 198
           N   D +    L  D   +   E  SWPY +   +D +   +R  VSGRL  +  +  + 
Sbjct: 286 NQGNDRE----LVADVSRRAEHERASWPYRW--LDDARYPRQRATVSGRLRTEAPHATVV 339

Query: 199 ANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGDYR 258
            N +           ++  +   Y F    + DG FS+ N+  G Y L A+  G      
Sbjct: 340 LNSS---------AENFDIQTTGYLFSARTNRDGRFSLSNVPPGEYRLSAYADGGTQIGL 390

Query: 259 SDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHP 318
                    G   ++G +    P   P  W IG  DR A EF             F + P
Sbjct: 391 LAQQTVRVEGKKTRLGQIDARQP--APLAWAIGQADRRADEFR------------FGDKP 436

Query: 319 DRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLD 378
            ++R    W   TE+    DL + IG S   KDW++AQ          Q  +W I F   
Sbjct: 437 RQYR----WQ--TEV--PADLTFEIGKSRERKDWYYAQT---------QPGSWHILFNTR 479

Query: 379 HVDRNSSYKLRVAIASATLAELQVRVNDP----NANRPLFTTGLIGRDNAIARHGIH-GL 433
             ++   Y L +AIA+A+   +    + P      N  L TT     D +I R  +  G 
Sbjct: 480 TPEQ--PYTLNIAIAAASNNGMTTPASSPQLAVKLNGQLLTTLKYDNDKSIYRGAMQSGR 537

Query: 434 YLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPP 478
           Y   H+ +P     +G N I L+          +MYD I L   P
Sbjct: 538 YHEAHIPLPAGALQQGGNRITLELLGGM-----VMYDAITLTETP 577
Degrades the rhamnogalacturonan I (RG-I) backbone of pectin. Is required for the full virulence of E.chrysanthemi strain 3937 as it is involved in rotting of plant tissue.
Dickeya dadantii (strain 3937) (taxid: 198628)
EC: 4EC: .EC: 2EC: .EC: 2EC: .EC: -
>sp|Q5AZ85|RGLB_EMENI Rhamnogalacturonate lyase B OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglB PE=2 SV=2 Back     alignment and function description
>sp|B8N5T6|RGLB_ASPFN Probable rhamnogalacturonate lyase B OS=Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q0C7K7|RGLB_ASPTN Probable rhamnogalacturonate lyase B OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q4WR79|RGLB_ASPFU Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|B0XPA2|RGLB_ASPFC Probable rhamnogalacturonate lyase B OS=Neosartorya fumigata (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|A5ABH4|RGLB_ASPNC Probable rhamnogalacturonate lyase B OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|A1D144|RGLB_NEOFI Probable rhamnogalacturonate lyase B OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=rglB PE=3 SV=1 Back     alignment and function description
>sp|Q5B5P1|RGLC_EMENI Probable rhamnogalacturonate lyase C OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rglC PE=3 SV=1 Back     alignment and function description
>sp|Q2U5P7|RGLC_ASPOR Probable rhamnogalacturonate lyase C OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=rglC PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
224081899 629 predicted protein [Populus trichocarpa] 0.993 0.758 0.787 0.0
255572840 633 lyase, putative [Ricinus communis] gi|22 0.995 0.755 0.738 0.0
359492972 643 PREDICTED: probable rhamnogalacturonate 0.993 0.741 0.743 0.0
356515685 643 PREDICTED: probable rhamnogalacturonate 0.997 0.744 0.724 0.0
357466851 715 Rhamnogalacturonate lyase [Medicago trun 0.995 0.668 0.742 0.0
224063361 626 predicted protein [Populus trichocarpa] 0.987 0.757 0.734 0.0
302142095 656 unnamed protein product [Vitis vinifera] 0.995 0.728 0.740 0.0
255572842 642 lyase, putative [Ricinus communis] gi|22 0.995 0.744 0.728 0.0
356515683 636 PREDICTED: rhamnogalacturonate lyase-lik 0.995 0.751 0.727 0.0
356510088 643 PREDICTED: rhamnogalacturonate lyase B-l 0.997 0.744 0.715 0.0
>gi|224081899|ref|XP_002306520.1| predicted protein [Populus trichocarpa] gi|222855969|gb|EEE93516.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  785 bits (2027), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/480 (78%), Positives = 415/480 (86%), Gaps = 3/480 (0%)

Query: 2   FRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKD 61
           F+YM IADNR R MPLP+D   GR Q LAYPEAV LVNP  PE  GEVDDKYQYSCENKD
Sbjct: 137 FQYMAIADNRQRLMPLPDDRLPGRCQALAYPEAVILVNPKLPELTGEVDDKYQYSCENKD 196

Query: 62  LKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHI 121
            +VHGWIC   PVGFW I PSDEFR+ GPLKQNLTSHVGPTTLA+F S HYAGK +   I
Sbjct: 197 NQVHGWICFKPPVGFWQITPSDEFRTAGPLKQNLTSHVGPTTLAMFHSSHYAGKDLVLSI 256

Query: 122 GQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEER 181
              EPWKKVFGPVFIYLNSA++G+DPL+LWEDAK++MM+EVQSWPY+FPASEDFQKSE+R
Sbjct: 257 SPGEPWKKVFGPVFIYLNSASNGEDPLFLWEDAKMQMMAEVQSWPYSFPASEDFQKSEQR 316

Query: 182 GCVSGRLLVQD---SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKN 238
           G V GRLLV+D   S+D I A+GAYVGLAPPGDVGSWQTECKDYQFWT ADE+G FSIKN
Sbjct: 317 GNVCGRLLVKDRNISDDYILASGAYVGLAPPGDVGSWQTECKDYQFWTRADENGYFSIKN 376

Query: 239 IRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAR 298
           IRTG+YNLYAWVPGF+GDYR DA+V I SG ++ MGDLVYEPPRDGPTLWEIGIPDRSA 
Sbjct: 377 IRTGDYNLYAWVPGFLGDYRWDAIVNIISGCDMDMGDLVYEPPRDGPTLWEIGIPDRSAA 436

Query: 299 EFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVV 358
           EF +P PDPK++N L+ NHPDRFRQYGLW RY +LYP+ DLVYT+G+SDY KDWFFAQVV
Sbjct: 437 EFYIPGPDPKFMNNLYANHPDRFRQYGLWGRYADLYPDTDLVYTVGLSDYRKDWFFAQVV 496

Query: 359 REMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGL 418
           R  D+ T  GTTWQIKFKLD VDRNSSYKLRVAIASATLAELQVRVND  A RPLFT+GL
Sbjct: 497 RRKDDDTQVGTTWQIKFKLDKVDRNSSYKLRVAIASATLAELQVRVNDAKAQRPLFTSGL 556

Query: 419 IGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPP 478
           IGRDNAIARHGIHGLY LY+VNIPG R +EGENTIFL QPRCTSPFQG+MYDYIRLEGPP
Sbjct: 557 IGRDNAIARHGIHGLYRLYNVNIPGARLVEGENTIFLTQPRCTSPFQGLMYDYIRLEGPP 616

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255572840|ref|XP_002527352.1| lyase, putative [Ricinus communis] gi|223533271|gb|EEF35024.1| lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359492972|ref|XP_002285626.2| PREDICTED: probable rhamnogalacturonate lyase B-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356515685|ref|XP_003526529.1| PREDICTED: probable rhamnogalacturonate lyase B-like [Glycine max] Back     alignment and taxonomy information
>gi|357466851|ref|XP_003603710.1| Rhamnogalacturonate lyase [Medicago truncatula] gi|355492758|gb|AES73961.1| Rhamnogalacturonate lyase [Medicago truncatula] Back     alignment and taxonomy information
>gi|224063361|ref|XP_002301112.1| predicted protein [Populus trichocarpa] gi|222842838|gb|EEE80385.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302142095|emb|CBI19298.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255572842|ref|XP_002527353.1| lyase, putative [Ricinus communis] gi|223533272|gb|EEF35025.1| lyase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356515683|ref|XP_003526528.1| PREDICTED: rhamnogalacturonate lyase-like [Glycine max] Back     alignment and taxonomy information
>gi|356510088|ref|XP_003523772.1| PREDICTED: rhamnogalacturonate lyase B-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
TAIR|locus:2024331675 AT1G09910 [Arabidopsis thalian 0.991 0.705 0.708 2.7e-194
TAIR|locus:2024427617 AT1G09890 [Arabidopsis thalian 0.989 0.769 0.675 9.1e-187
TAIR|locus:2136007646 AT4G24430 [Arabidopsis thalian 0.995 0.739 0.651 1.1e-179
TAIR|locus:2024417631 AT1G09880 [Arabidopsis thalian 0.991 0.754 0.627 4e-170
TAIR|locus:2066040677 AT2G22620 [Arabidopsis thalian 0.985 0.698 0.591 1.7e-155
TAIR|locus:2121095667 AT4G38030 [Arabidopsis thalian 0.987 0.710 0.575 2.7e-155
TAIR|locus:2121090678 AT4G37950 [Arabidopsis thalian 0.983 0.696 0.573 3.4e-148
TAIR|locus:2200390248 AT1G65210 "AT1G65210" [Arabido 0.383 0.741 0.589 1.9e-58
ASPGD|ASPL0000007043660 rglB [Emericella nidulans (tax 0.858 0.624 0.260 7e-18
UNIPROTKB|Q5AZ85660 rglB "Rhamnogalacturonate lyas 0.858 0.624 0.260 7e-18
TAIR|locus:2024331 AT1G09910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1882 (667.6 bits), Expect = 2.7e-194, P = 2.7e-194
 Identities = 340/480 (70%), Positives = 391/480 (81%)

Query:     2 FRYMVIADNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKD 61
             F YM +AD+R R MP P+DL  GR Q L Y EA  L  P DP  QGEVDDKYQYSCENKD
Sbjct:   196 FHYMAVADDRKRIMPFPDDLCKGRCQTLDYQEASLLTAPCDPRLQGEVDDKYQYSCENKD 255

Query:    62 LKVHGWICRTTPVGFWLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHI 121
             L+VHGWI    PVGFW I PS+EFRSGGPLKQNLTSHVGPTTLAVF S HYAGK M    
Sbjct:   256 LRVHGWISFDPPVGFWQITPSNEFRSGGPLKQNLTSHVGPTTLAVFHSTHYAGKTMMPRF 315

Query:   122 GQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEER 181
                EPWKKV+GPVFIYLNS A+GDDPL LW+DAKIKMM+EV+ WPY+F AS+D+ KSEER
Sbjct:   316 EHGEPWKKVYGPVFIYLNSTANGDDPLCLWDDAKIKMMAEVERWPYSFVASDDYPKSEER 375

Query:   182 GCVSGRLLVQD---SNDVISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKN 238
             G   GRLL++D   +ND+ISA GAYVGLAPPGD GSWQ ECK YQFW  ADE G FSI N
Sbjct:   376 GTARGRLLIRDRFINNDLISARGAYVGLAPPGDSGSWQIECKGYQFWAIADEAGYFSIGN 435

Query:   239 IRTGNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAR 298
             +R G YNLYAWVP F+GDY +  +V +TSG  I+MGD+VYEPPRDGPTLWEIGIPDR A 
Sbjct:   436 VRPGEYNLYAWVPSFIGDYHNGTIVRVTSGCMIEMGDIVYEPPRDGPTLWEIGIPDRKAS 495

Query:   299 EFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVV 358
             EF +PDPDP  VNR+ V+H DRFRQYGLW +YT++YPN+DLVYT+GVSDY +DWFFA V 
Sbjct:   496 EFFIPDPDPTLVNRVLVHHQDRFRQYGLWKKYTDMYPNDDLVYTVGVSDYRRDWFFAHVP 555

Query:   359 REMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATLAELQVRVNDPNANRPLFTTGL 418
             R+  +  ++GTTWQI F L+++D+ ++YKLRVAIASATLAELQ+R+ND  A RPLFTTGL
Sbjct:   556 RKKGD-VHEGTTWQIIFNLENIDQKANYKLRVAIASATLAELQIRINDAEAIRPLFTTGL 614

Query:   419 IGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQGIMYDYIRLEGPP 478
             IGRDN+IARHGIHG+Y+LY VNIPG R ++G+NTIFLKQPRC  PFQGIMYDYIRLEGPP
Sbjct:   615 IGRDNSIARHGIHGVYMLYAVNIPGNRLVQGDNTIFLKQPRCNGPFQGIMYDYIRLEGPP 674
GO:0003824 "catalytic activity" evidence=IEA
GO:0005576 "extracellular region" evidence=ISM
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0016829 "lyase activity" evidence=ISS
GO:0030246 "carbohydrate binding" evidence=IEA
TAIR|locus:2024427 AT1G09890 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136007 AT4G24430 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024417 AT1G09880 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2066040 AT2G22620 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121095 AT4G38030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121090 AT4G37950 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200390 AT1G65210 "AT1G65210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000007043 rglB [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5AZ85 rglB "Rhamnogalacturonate lyase B" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.2LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_V4496
hypothetical protein (629 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
cd10317161 cd10317, RGL4_C, C-terminal domain of rhamnogalact 9e-55
cd10320265 cd10320, RGL4_N, N-terminal catalytic domain of rh 2e-39
cd1031692 cd10316, RGL4_M, Middle domain of rhamnogalacturon 2e-35
pfam06045220 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate ly 9e-15
pfam1362081 pfam13620, CarboxypepD_reg, Carboxypeptidase regul 3e-04
>gnl|CDD|199905 cd10317, RGL4_C, C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information 
 Score =  180 bits (458), Expect = 9e-55
 Identities = 70/190 (36%), Positives = 84/190 (44%), Gaps = 31/190 (16%)

Query: 288 WEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSD 347
           W+IG PDR+A EF   D  P Y                       L P  DL YT+G SD
Sbjct: 1   WQIGTPDRTAAEFRNGDLLPNYHPS-----------------DWRLAPPGDLTYTVGSSD 43

Query: 348 YSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATL-AELQVRVND 406
              DW++AQ V            W I+F L  V       LR+A+A A+     QVRVND
Sbjct: 44  SDFDWYYAQSV---------NGPWTIRFDLTAVQATGGATLRIALAGASAGGRPQVRVND 94

Query: 407 PNANRPLFTTGLIGRD-NAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTSPFQ 465
              N PL  T   G D   I R    G Y LY  +IP +  + G NTI L     +S   
Sbjct: 95  ---NGPLLPTAPTGNDSRGIYRGAYRGNYHLYEFDIPASLLVAGTNTITLTVVSGSSLSP 151

Query: 466 GIMYDYIRLE 475
           G+MYD IRLE
Sbjct: 152 GVMYDAIRLE 161

The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. Length = 161
>gnl|CDD|199907 cd10320, RGL4_N, N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|199904 cd10316, RGL4_M, Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase Back     alignment and domain information
>gnl|CDD|218870 pfam06045, Rhamnogal_lyase, Rhamnogalacturonate lyase family Back     alignment and domain information
>gnl|CDD|222268 pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 480
PF14683167 CBM-like: Polysaccharide lyase family 4, domain II 100.0
PF09284249 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPr 99.9
PF1468695 fn3_3: Polysaccharide lyase family 4, domain II; P 99.88
PF1362082 CarboxypepD_reg: Carboxypeptidase regulatory-like 98.89
PF1371588 DUF4480: Domain of unknown function (DUF4480) 98.59
cd03865402 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (C 98.12
cd03863375 M14_CPD_II The second carboxypeptidase (CP)-like d 98.11
cd03864392 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, als 98.09
cd06245363 M14_CPD_III The third carboxypeptidase (CP)-like d 97.92
cd03858374 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like sub 97.76
cd03868372 M14_CPD_I The first carboxypeptidase (CP)-like dom 97.76
cd03867395 M14_CPZ Peptidase M14-like domain of carboxypeptid 97.49
cd03866376 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM 96.8
PF08400134 phage_tail_N: Prophage tail fibre N-terminal; Inte 95.89
PRK15036137 hydroxyisourate hydrolase; Provisional 95.66
PF0830871 PEGA: PEGA domain; InterPro: IPR013229 This domain 95.63
PF03422125 CBM_6: Carbohydrate binding module (family 6); Int 95.18
cd03869405 M14_CPX_like Peptidase M14-like domain of carboxyp 94.61
KOG1948 1165 consensus Metalloproteinase-related collagenase pM 94.46
PF0573870 Cna_B: Cna protein B-type domain; InterPro: IPR008 94.34
PF09430123 DUF2012: Protein of unknown function (DUF2012); In 93.93
cd00421146 intradiol_dioxygenase Intradiol dioxygenases catal 93.92
COG3485226 PcaH Protocatechuate 3,4-dioxygenase beta subunit 93.19
cd03463185 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4 91.98
cd03459158 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) 91.06
PF0721085 DUF1416: Protein of unknown function (DUF1416); In 90.98
cd03462247 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) 90.9
KOG1948 1165 consensus Metalloproteinase-related collagenase pM 90.88
PF03170 605 BcsB: Bacterial cellulose synthase subunit; InterP 90.84
TIGR02465246 chlorocat_1_2 chlorocatechol 1,2-dioxygenase. Memb 90.7
PF0749566 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi 90.42
PF00775183 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 Th 89.49
cd03464220 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4- 88.92
TIGR02423193 protocat_alph protocatechuate 3,4-dioxygenase, alp 88.7
cd03458256 Catechol_intradiol_dioxygenases Catechol intradiol 88.41
TIGR02438281 catachol_actin catechol 1,2-dioxygenase, Actinobac 86.92
TIGR02422220 protocat_beta protocatechuate 3,4-dioxygenase, bet 86.6
smart00606129 CBD_IV Cellulose Binding Domain Type IV. 85.58
PRK11114 756 cellulose synthase regulator protein; Provisional 85.44
PF02837167 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sug 85.3
cd03461277 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) ca 84.43
cd03460282 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyz 84.06
PF13364111 BetaGal_dom4_5: Beta-galactosidase jelly roll doma 83.01
TIGR02439285 catechol_proteo catechol 1,2-dioxygenase, proteoba 82.56
TIGR02962112 hdxy_isourate hydroxyisourate hydrolase. Members o 81.89
>PF14683 CBM-like: Polysaccharide lyase family 4, domain III; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information 
Probab=100.00  E-value=1.2e-46  Score=351.41  Aligned_cols=165  Identities=52%  Similarity=0.885  Sum_probs=114.4

Q ss_pred             CCeEEEeccCCCccccccCCCCccccccccccCCchhhcccchhcccccCCCCCeeEEeeccCCCCCceeEEEEEecCCc
Q 011661          285 PTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNK  364 (480)
Q Consensus       285 ~~LweIG~~Drta~eF~~~d~~~~~~~k~~~~hp~~~R~~glW~~y~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~~  364 (480)
                      ++|||||+|||++.||+++|+             +++|||| |++|+++||++|++||||+| +++||||||+++  .+ 
T Consensus         1 ~~iW~IG~~Drta~eF~~~~~-------------~~~r~~~-~~d~~~~~p~~~~~ytVG~S-~~~Dw~y~~~~~--~~-   62 (167)
T PF14683_consen    1 PTIWQIGTPDRTAAEFRNGDP-------------DKYRQYG-WSDYSRDFPWEDLTYTVGSS-PAKDWPYAQWGR--VN-   62 (167)
T ss_dssp             SEEEEEE-SSSS-TTSBTHH--------------HHTTS---TT--TTS----S-EEETTTS--GGGSBSEEETT--TS-
T ss_pred             CcceEeCCCCCCchhhccCCh-------------hhhhhcC-cccchhhCCCCCCEEEEccC-cccCCcEEEEec--cC-
Confidence            579999999999999998642             5699998 99999999998999999999 889999999974  33 


Q ss_pred             ccCcccEEEEEEeCCCCCCCcEEEEEEEecc-CCCeEEEEEcCCCCCCCcccccccCCCCeeeceeee-eeeEEEEEEee
Q 011661          365 TYQGTTWQIKFKLDHVDRNSSYKLRVAIASA-TLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIH-GLYLLYHVNIP  442 (480)
Q Consensus       365 ~~~~~~w~I~F~L~~~~~~~~~tLriala~a-~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~-G~~~~~~~~ip  442 (480)
                          ++|+|+|+|++++..+.+||||+||++ ++++++|+|||+..  +++. ..+++|++++|++++ |+|++++|+||
T Consensus        63 ----~~w~I~F~l~~~~~~~~~tL~i~la~a~~~~~~~V~vNg~~~--~~~~-~~~~~d~~~~r~g~~~G~~~~~~~~ip  135 (167)
T PF14683_consen   63 ----GTWTIKFDLDAVQLAGTYTLRIALAGASAGGRLQVSVNGWSG--PFPS-APFGNDNAIYRSGIHRGNYRLYEFDIP  135 (167)
T ss_dssp             ------EEEEEEE-GGG-S--EEEEEEEEEEETT-EEEEEETTEE--------------S--GGGT---S---EEEEEE-
T ss_pred             ----CCEEEEEECCCCccCCcEEEEEEeccccCCCCEEEEEcCccC--Cccc-cccCCCCceeeCceecccEEEEEEEEc
Confidence                899999999999877899999999999 79999999999544  3332 467899999999998 99999999999


Q ss_pred             CCCeeeeecEEEEEeecCCCCCceEEEEEEEE
Q 011661          443 GTRFIEGENTIFLKQPRCTSPFQGIMYDYIRL  474 (480)
Q Consensus       443 a~~L~~G~NtI~l~~~~gss~~~~vmyD~I~L  474 (480)
                      +++|++|+|+|+|++++|++.+.|||||||||
T Consensus       136 a~~L~~G~Nti~lt~~~gs~~~~gvmyD~I~L  167 (167)
T PF14683_consen  136 ASLLKAGENTITLTVPSGSGLSPGVMYDYIRL  167 (167)
T ss_dssp             TTSS-SEEEEEEEEEE-S-GGSSEEEEEEEEE
T ss_pred             HHHEEeccEEEEEEEccCCCccCeEEEEEEEC
Confidence            99999999999999999987788999999998

>PF09284 RhgB_N: Rhamnogalacturonase B, N-terminal; InterPro: IPR015364 This domain is found in prokaryotic enzyme rhamnogalacturonase B, it adopts a structure consisting of a beta supersandwich, with eighteen strands in two beta-sheets Back     alignment and domain information
>PF14686 fn3_3: Polysaccharide lyase family 4, domain II; PDB: 1NKG_A 2XHN_B 3NJX_A 3NJV_A Back     alignment and domain information
>PF13620 CarboxypepD_reg: Carboxypeptidase regulatory-like domain; PDB: 3MN8_D 3P0D_I 3KCP_A 2B59_B 1UWY_A 1H8L_A 1QMU_A 2NSM_A Back     alignment and domain information
>PF13715 DUF4480: Domain of unknown function (DUF4480) Back     alignment and domain information
>cd03865 M14_CPE_H Peptidase M14 Carboxypeptidase (CP) E (CPE, also known as carboxypeptidase H, and enkephalin convertase; EC 3 Back     alignment and domain information
>cd03863 M14_CPD_II The second carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03864 M14_CPN Peptidase M14 Carboxypeptidase N (CPN, also known as kininase I, creatine kinase conversion factor, plasma carboxypeptidase B, arginine carboxypeptidase, and protaminase; EC 3 Back     alignment and domain information
>cd06245 M14_CPD_III The third carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03858 M14_CP_N-E_like Carboxypeptidase (CP) N/E-like subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03868 M14_CPD_I The first carboxypeptidase (CP)-like domain of Carboxypeptidase D (CPD; EC 3 Back     alignment and domain information
>cd03867 M14_CPZ Peptidase M14-like domain of carboxypeptidase (CP) Z (CPZ), CPZ belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>cd03866 M14_CPM Peptidase M14 Carboxypeptidase (CP) M (CPM) belongs to the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>PF08400 phage_tail_N: Prophage tail fibre N-terminal; InterPro: IPR013609 This entry represents the N terminus of phage 933W tail fibre protein Back     alignment and domain information
>PRK15036 hydroxyisourate hydrolase; Provisional Back     alignment and domain information
>PF08308 PEGA: PEGA domain; InterPro: IPR013229 This domain is found in both archaea and bacteria and has similarity to S-layer (surface layer) proteins Back     alignment and domain information
>PF03422 CBM_6: Carbohydrate binding module (family 6); InterPro: IPR005084 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity Back     alignment and domain information
>cd03869 M14_CPX_like Peptidase M14-like domain of carboxypeptidase (CP)-like protein X (CPX), CPX forms a distinct subgroup of the N/E subfamily of the M14 family of metallocarboxypeptidases (MCPs) Back     alignment and domain information
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains Back     alignment and domain information
>PF09430 DUF2012: Protein of unknown function (DUF2012); InterPro: IPR019008 This domain is found in different proteins, including uncharacterised protein family UPF0480 and nodal modulators Back     alignment and domain information
>cd00421 intradiol_dioxygenase Intradiol dioxygenases catalyze the critical ring-cleavage step in the conversion of catecholate derivatives to citric acid cycle intermediates Back     alignment and domain information
>COG3485 PcaH Protocatechuate 3,4-dioxygenase beta subunit [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>cd03463 3,4-PCD_alpha Protocatechuate 3,4-dioxygenase (3,4-PCD) , alpha subunit Back     alignment and domain information
>cd03459 3,4-PCD Protocatechuate 3,4-dioxygenase (3,4-PCD) catalyzes the oxidative ring cleavage of 3,4-dihydroxybenzoate to produce beta-carboxy-cis,cis-muconate Back     alignment and domain information
>PF07210 DUF1416: Protein of unknown function (DUF1416); InterPro: IPR010814 This family consists of several hypothetical bacterial proteins of around 100 residues in length Back     alignment and domain information
>cd03462 1,2-CCD chlorocatechol 1,2-dioxygenases (1,2-CCDs) (type II enzymes) are homodimeric intradiol dioxygenases that degrade chlorocatechols via the addition of molecular oxygen and the subsequent cleavage between two adjacent hydroxyl groups Back     alignment and domain information
>KOG1948 consensus Metalloproteinase-related collagenase pM5 [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF03170 BcsB: Bacterial cellulose synthase subunit; InterPro: IPR018513 An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity [] Back     alignment and domain information
>TIGR02465 chlorocat_1_2 chlorocatechol 1,2-dioxygenase Back     alignment and domain information
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators Back     alignment and domain information
>PF00775 Dioxygenase_C: Dioxygenase; InterPro: IPR000627 This entry represents the C-terminal domain common to several intradiol ring-cleavage dioxygenases Back     alignment and domain information
>cd03464 3,4-PCD_beta Protocatechuate 3,4-dioxygenase (3,4-PCD) , beta subunit Back     alignment and domain information
>TIGR02423 protocat_alph protocatechuate 3,4-dioxygenase, alpha subunit Back     alignment and domain information
>cd03458 Catechol_intradiol_dioxygenases Catechol intradiol dioxygenases can be divided into several subgroups according to their substrate specificity for catechol, chlorocatechols and hydroxyquinols Back     alignment and domain information
>TIGR02438 catachol_actin catechol 1,2-dioxygenase, Actinobacterial Back     alignment and domain information
>TIGR02422 protocat_beta protocatechuate 3,4-dioxygenase, beta subunit Back     alignment and domain information
>smart00606 CBD_IV Cellulose Binding Domain Type IV Back     alignment and domain information
>PRK11114 cellulose synthase regulator protein; Provisional Back     alignment and domain information
>PF02837 Glyco_hydro_2_N: Glycosyl hydrolases family 2, sugar binding domain; InterPro: IPR006104 O-Glycosyl hydrolases 3 Back     alignment and domain information
>cd03461 1,2-HQD Hydroxyquinol 1,2-dioxygenase (1,2-HQD) catalyzes the ring cleavage of hydroxyquinol (1,2,4-trihydroxybenzene), a intermediate in the degradation of a large variety of aromatic compounds including some polychloro- and nitroaromatic pollutants, to form 3-hydroxy-cis,cis-muconates Back     alignment and domain information
>cd03460 1,2-CTD Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an intradiol cleavage reaction of catechol to form cis,cis-muconate Back     alignment and domain information
>PF13364 BetaGal_dom4_5: Beta-galactosidase jelly roll domain; PDB: 1TG7_A 1XC6_A 3OGS_A 3OGV_A 3OGR_A 3OG2_A Back     alignment and domain information
>TIGR02439 catechol_proteo catechol 1,2-dioxygenase, proteobacterial Back     alignment and domain information
>TIGR02962 hdxy_isourate hydroxyisourate hydrolase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 1e-116
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-06
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Length = 508 Back     alignment and structure
 Score =  351 bits (901), Expect = e-116
 Identities = 81/464 (17%), Positives = 143/464 (30%), Gaps = 78/464 (16%)

Query: 17  LPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGF 76
           LP +   G     A   A++  +        E   K+  S    D + H           
Sbjct: 117 LPNEEPFGDVSTTADGTAIEGSDVFLVG--SETRSKFYSSERFIDDQRHCIA--GDAHRV 172

Query: 77  WLIIPSDEFRSGGPLKQNLTSHVGPTTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFI 136
            +I+   E  SGGP  +++ S+ G +  A++   +        H+  +     + GP  +
Sbjct: 173 CMILNQYESSSGGPFHRDINSNNGGSYNALYWYMNSG------HVQTESYRMGLHGPYSM 226

Query: 137 YLNSAADGDDPLWLWEDAKIKMMSEVQSWPYNFPASEDFQKSEERGCVSGRLLVQDSNDV 196
           Y +       P    + +            +     + +  +  RG V+G          
Sbjct: 227 YFS---RSGTPSTSIDTSF-----------FADLDIKGYVAASGRGKVAGT--------- 263

Query: 197 ISANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRTGNYNLYAWVPGFVGD 256
                     A               Q+WT     G F+   ++ G Y +  +   +   
Sbjct: 264 -------ASGADSSMDWVVHWYNDAAQYWTYTSSSGSFTSPAMKPGTYTMVYYQGEYAVA 316

Query: 257 YRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVN 316
             S   VT+++GS       +    + G T+++IG  D     F       +        
Sbjct: 317 TSS---VTVSAGSTTTKN--ISGSVKTGTTIFKIGEWDGQPTGF-------RNAANQLRM 364

Query: 317 HPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFK 376
           HP   R          +     L YT+G S  + D+  A                 IKF 
Sbjct: 365 HPSDSR----------MSSWGPLTYTVGSSALT-DFPMAVF-------KSVNNPVTIKFT 406

Query: 377 LDHVDRNSSYKLRVAIASA-TLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYL 435
                   +  LR+    +      Q  +N    + P   T L      + R    GL  
Sbjct: 407 ATSAQ-TGAATLRIGTTLSFAGGRPQATINSYTGSAPAAPTNLD--SRGVTRGAYRGLGE 463

Query: 436 LYHVNIPGTRFIEGENTIFLKQPRCTSPF----QGIMYDYIRLE 475
           +Y V+IP    + G NTI +     +S         ++D + L 
Sbjct: 464 VYDVSIPSGTIVAGTNTITINVISGSSGDTYLSPNFIFDCVELF 507
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
1nkg_A508 Rhamnogalacturonase B; polysaccharide lyase, carbo 100.0
2nsm_A439 Carboxypeptidase N catalytic chain; caroxypeptidas 98.08
1h8l_A380 Carboxypeptidase GP180 residues 503-882; hydrolase 97.99
3mn8_A435 LP15968P; catalytic domain of alpha/beta-hydrolase 97.92
1uwy_A426 Carboxypeptidase M; metallopeptidase, GPI-anchor, 97.88
1xpn_A170 Hypothetical protein PA1324; B-barrel, structural 97.15
3qec_A150 Putative carbohydrate binding protein; suramin bin 96.96
4aw7_A591 GH86A beta-porphyranase; hydrolase, porphyran-hexa 96.56
2wz8_A156 Cellulosome protein dockerin type I; sugar binding 96.44
2w87_A139 Esterase D, XYL-CBM35; plant cell WALL degradation 96.28
2w3j_A145 Carbohydrate binding module; sugar-binding protein 96.0
2w47_A144 Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1. 95.78
2bgo_A140 Endo-B1,4-mannanase 5C; carbohydrate binding prote 94.88
2vzp_A127 Aocbm35, EXO-beta-D-glucosaminidase; family 35, CS 94.53
3kcp_A321 Cellulosomal-scaffolding protein A; dockerin, X-mo 94.13
2xsu_A312 Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE 92.43
2azq_A311 Catechol 1,2-dioxygenase; CTD, lipid, isozyme, int 91.41
1uxz_A131 Cellulase B; carbohydrate binding module, CBM6, mi 90.88
2boy_A254 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxi 90.72
3th1_A260 Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxy 89.66
2bum_B241 Protocatechuate 3,4-dioxygenase beta chain; oxidor 89.58
3t63_M238 3,4-PCD, protocatechuate 3,4-dioxygenase beta chai 89.44
2y8k_A491 Arabinoxylanase, carbohydrate binding family 6; hy 88.6
1tmx_A293 Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidor 88.44
2bum_A209 Protocatechuate 3,4-dioxygenase alpha chain; oxido 87.71
1dmh_A311 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydroc 87.14
3n9t_A290 PNPC; phospholipid binds, N-terminal helix tunnel, 87.09
2cdp_A160 Beta-agarase 1; carbohydrate-binding module, hydro 86.41
3hhy_A280 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, 85.87
3t63_A200 3,4-PCD, protocatechuate 3,4-dioxygenase alpha cha 85.85
1ti6_B274 Pyrogallol hydroxytransferase small subunit; molyb 84.59
3o5u_A257 Chlorocatechol 1,2-dioxygenase; beta barrel,oxidor 83.97
1w9s_A142 BH0236 protein, BHCBM6; carbohydrate-binding modul 83.81
2h4e_A127 Transthyretin; amyloid, sulfite, familial amyloido 81.35
>1nkg_A Rhamnogalacturonase B; polysaccharide lyase, carbohydrate active enzyme, pectin, LY; 1.50A {Aspergillus aculeatus} SCOP: b.3.1.2 b.18.1.25 b.30.5.10 PDB: 2xhn_A* 3njv_A* 3njx_A Back     alignment and structure
Probab=100.00  E-value=2.2e-105  Score=853.31  Aligned_cols=379  Identities=21%  Similarity=0.284  Sum_probs=339.7

Q ss_pred             ccccccCCCCCCCCCCCCccccccceeeecCCCCCCCcceEeeeeeeecccccccEEEEEeCCCCeEEEEEcCCCccccC
Q 011661            9 DNRHRQMPLPEDLSTGRGQPLAYPEAVQLVNPTDPEHQGEVDDKYQYSCENKDLKVHGWICRTTPVGFWLIIPSDEFRSG   88 (480)
Q Consensus         9 d~~~~~~p~~~d~~~~~~~~l~~~ea~~~~~~~~~~~~G~~~sKY~~s~~~~d~~vhG~~~~g~~vG~W~I~~s~E~~sG   88 (480)
                      ++++|+||+|+|+   .+++ ++.|.+       +.++|+++||||||+++||++||||+  +++||||||+||+||++|
T Consensus       118 ~~~~r~~~~p~~~---~~~~-v~~~d~-------~~l~G~~~~KY~~s~~~~D~~vhG~~--~~~vG~w~I~~s~E~~sG  184 (508)
T 1nkg_A          118 PNEEPFGDVSTTA---DGTA-IEGSDV-------FLVGSETRSKFYSSERFIDDQRHCIA--GDAHRVCMILNQYESSSG  184 (508)
T ss_dssp             CEEETTGGGGCCT---TCEE-EETTTE-------EEETTEEEEGGGGCCBGGGCSEEEEE--CSSCEEEEECCCCTTCSS
T ss_pred             CCccccCCCCccc---cCcE-eeeccc-------eeeCCEEccceeccccceecceEEEE--CCCeEEEEEcCCcccccC
Confidence            4568999999986   3555 344433       44689999999999999999999999  599999999999999999


Q ss_pred             CCceeccccccCC---cEEEEEeeccccCCccccccCCCCCCceeeceEEEEEcCCCCCCCcchhHHHHHHHHhhhccCC
Q 011661           89 GPLKQNLTSHVGP---TTLAVFLSGHYAGKYMETHIGQDEPWKKVFGPVFIYLNSAADGDDPLWLWEDAKIKMMSEVQSW  165 (480)
Q Consensus        89 GP~kqdL~~h~g~---~~l~y~~s~H~~g~~~~~~~~~Ge~w~k~~GP~~~y~n~g~~~~~~~~l~~Da~~~~~~E~~~w  165 (480)
                      |||||||++|+++   ++|+||+|+|+    ++|++|.|     ||||||||||+|++++                 ++|
T Consensus       185 GP~kqdL~~h~~~~~~~~~~y~~s~H~----~t~~~~~g-----~~GP~~~y~n~g~~~~-----------------~~w  238 (508)
T 1nkg_A          185 GPFHRDINSNNGGSYNALYWYMNSGHV----QTESYRMG-----LHGPYSMYFSRSGTPS-----------------TSI  238 (508)
T ss_dssp             CTTCBCCCEEECSSCEEEEEEEECSTT----CCSCCCCE-----EEEEEEEEEESSCCCC-----------------SCC
T ss_pred             CCcchhhhccCCcccceeeeeEeeccc----cccccccc-----ccccEEEEECCCCCCC-----------------CCC
Confidence            9999999999999   89999999997    47888865     9999999999999863                 599


Q ss_pred             CCCCCCC---CCCCCCCCCeEEEEEEEEecCCCcc-ccCceEEEecCCCCCCCccccccccceEEEeCCCcceEeCcccC
Q 011661          166 PYNFPAS---EDFQKSEERGCVSGRLLVQDSNDVI-SANGAYVGLAPPGDVGSWQTECKDYQFWTTADEDGCFSIKNIRT  241 (480)
Q Consensus       166 py~f~~s---~~y~~~s~RGtVsG~v~~~d~~~~~-pa~~a~V~L~~~~~~g~~q~~~~~yqYwt~td~~G~FtI~nVrp  241 (480)
                      ||+|++|   ++||++++||+|+|+|+   +   + ++..++|+|.           +++|||||+||++|+|+|++|||
T Consensus       239 pysf~~s~~~~~y~~~~~RGtVsG~V~---G---~~~~~~avv~~~-----------~k~~qywt~td~~G~FtI~~V~p  301 (508)
T 1nkg_A          239 DTSFFADLDIKGYVAASGRGKVAGTAS---G---ADSSMDWVVHWY-----------NDAAQYWTYTSSSGSFTSPAMKP  301 (508)
T ss_dssp             CCGGGGGTTCTTCCCGGGCBEEEEEEE---S---SCTTSCEEEEEE-----------CSSCEEEEECCTTCEEECCCBCS
T ss_pred             CCccccccCccCCcCcccccEEEEEEc---C---ccCCceEEEEEc-----------CCCceeEEEECCCCcEEeCCcCC
Confidence            9999999   99999999999999988   3   3 4445667764           59999999999999999999999


Q ss_pred             cceEEEEEECceeeeeeeeeEEEEeCCceeeecceEEcCCCCCCCeEEEeccCCCccccccCCCCccccccccccCCchh
Q 011661          242 GNYNLYAWVPGFVGDYRSDALVTITSGSNIKMGDLVYEPPRDGPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRF  321 (480)
Q Consensus       242 GtY~L~a~~~G~~G~~~~~~~VtV~aG~t~~l~~l~~~~~~~~~~LweIG~~Drta~eF~~~d~~~~~~~k~~~~hp~~~  321 (480)
                      |+|+|+||++|+   ...+.+|+|++|++++++ |+|+++ ++++|||||+|||+|.||+++|+       ..+|||+|+
T Consensus       302 GtY~L~a~~~G~---~~~~~~VtV~aG~t~~l~-i~~~~~-~g~~iW~IG~pDrta~eF~~~d~-------~~~~hp~~~  369 (508)
T 1nkg_A          302 GTYTMVYYQGEY---AVATSSVTVSAGSTTTKN-ISGSVK-TGTTIFKIGEWDGQPTGFRNAAN-------QLRMHPSDS  369 (508)
T ss_dssp             EEEEEEEEETTE---EEEEEEEEECTTCEEECC-EECCCC-CCSEEEEEECSSSSCTTSBTHHH-------HTTSCTTCT
T ss_pred             ceEEEEEEECce---EEEEeEEEEcCCCeeEee-eEEecC-CCCeeEEeeCCCCCchhhcCCCc-------ccccCcchh
Confidence            999999999987   356667999999999996 999876 79999999999999999999873       235799999


Q ss_pred             hcccchhcccccCCCCCeeEEeeccCCCCCceeEEEEEecCCcccCcccEEEEEEeCCCCCCCcEEEEEEEeccC-CCeE
Q 011661          322 RQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASAT-LAEL  400 (480)
Q Consensus       322 R~~glW~~y~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~~~~~~~~w~I~F~L~~~~~~~~~tLriala~a~-~~~~  400 (480)
                      ||| +|+         ||+||||+|++ +|||||||+  .++     ++|+|+|+|+++| .+++||||+||+|. ++++
T Consensus       370 r~~-~W~---------~l~ytVG~S~~-~Dw~ya~~~--~~~-----~~w~I~F~l~~~~-~~~~tLri~la~a~a~~~~  430 (508)
T 1nkg_A          370 RMS-SWG---------PLTYTVGSSAL-TDFPMAVFK--SVN-----NPVTIKFTATSAQ-TGAATLRIGTTLSFAGGRP  430 (508)
T ss_dssp             TSC-CCC---------SCEEETTTSCG-GGSBSEEET--TTT-----CCEEEEEEECGGG-CSCEEEEEEEEEEETTCEE
T ss_pred             ccc-ccC---------CeEEEeCcCch-hcCCeEEEC--CCC-----CcEEEEEEcCccc-CCceEEEEEehhhccCCCe
Confidence            999 994         79999999999 799999995  344     8999999999987 78999999999985 8999


Q ss_pred             EEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEeeCCCeeeeecEEEEEeecCCC--CCc--eEEEEEEEEec
Q 011661          401 QVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTS--PFQ--GIMYDYIRLEG  476 (480)
Q Consensus       401 ~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~l~~~~gss--~~~--~vmyD~I~Le~  476 (480)
                      +|+|||+..  +++.++.+++||||+||++||+|++++|+||+++|++|+|+|+|+++++++  +|+  +|||||||||.
T Consensus       431 qV~VN~~~~--~~~~~~~~~~~~~i~R~~~~G~~~~~~~~ipa~~L~~G~NtI~lt~~~~s~~~~fls~~vmyD~I~L~~  508 (508)
T 1nkg_A          431 QATINSYTG--SAPAAPTNLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGSSGDTYLSPNFIFDCVELFQ  508 (508)
T ss_dssp             EEEETTEEC--CCCCCCCCCCSCCGGGTCCCSCCCEEEEEECTTSSCSEEEEEEEEEECSCCCSGGGSSEEEEEEEEEEC
T ss_pred             EEEECCcCC--cCccccccCCCCeEEecceeeeeEEEEEEEcHHHeecCceEEEEEeccCCCCCccccccEEEEEEEecC
Confidence            999999754  577899999999999999999999999999999999999999999999986  588  99999999984
>2nsm_A Carboxypeptidase N catalytic chain; caroxypeptidase, zinc peptidase, transthyretin-like domain, processing, peptide modification, hydrolase; HET: NAG; 2.10A {Homo sapiens} Back     alignment and structure
>1h8l_A Carboxypeptidase GP180 residues 503-882; hydrolase, zinc-dependent protease; HET: NAG BMA NDG GEM; 2.6A {Lophonetta specularioides} SCOP: b.3.2.1 c.56.5.1 PDB: 1qmu_A* Back     alignment and structure
>3mn8_A LP15968P; catalytic domain of alpha/beta-hydrolase fold, C-terminal, A transthyretin-like domain, hydrolase; HET: NAG GEM; 2.70A {Drosophila melanogaster} Back     alignment and structure
>1uwy_A Carboxypeptidase M; metallopeptidase, GPI-anchor, metalloprotease, zinc, lipoprotein, hydrolase, structural proteomics in europe, spine; HET: NAG; 3.0A {Homo sapiens} SCOP: b.3.2.1 c.56.5.1 Back     alignment and structure
>1xpn_A Hypothetical protein PA1324; B-barrel, structural genomics, northeast structural genomics consortium, NESG, protein structure initiative; NMR {Pseudomonas aeruginosa} SCOP: b.3.7.1 Back     alignment and structure
>3qec_A Putative carbohydrate binding protein; suramin binding, heparin binding, possible carbohydrate TRAN biofilm formation; HET: PGE; 2.61A {Pseudomonas aeruginosa} Back     alignment and structure
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius} Back     alignment and structure
>2wz8_A Cellulosome protein dockerin type I; sugar binding protein; 1.50A {Clostridium thermocellum} Back     alignment and structure
>2w87_A Esterase D, XYL-CBM35; plant cell WALL degradation, carbohydrate protein binding, xylan, CMB35, glucuronic acid, hydrolase; HET: GCU; 1.60A {Cellvibrio japonicus} PDB: 2w46_A Back     alignment and structure
>2w3j_A Carbohydrate binding module; sugar-binding protein, family 35, uronic acid sugars; 1.70A {Uncultured bacterium} Back     alignment and structure
>2w47_A Lipolytic enzyme, G-D-S-L; hydrolase; HET: UNF; 1.40A {Clostridium thermocellum} PDB: 2w1w_A Back     alignment and structure
>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB: 2vzq_A* 2vzr_A* Back     alignment and structure
>3kcp_A Cellulosomal-scaffolding protein A; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} PDB: 3p0d_C 4fl4_C 2b59_B Back     alignment and structure
>2xsu_A Catechol 1,2 dioxygenase; oxidoreductase; HET: PIE; 1.60A {Acinetobacter radioresistens} PDB: 2xsr_A* 2xsv_A* Back     alignment and structure
>2azq_A Catechol 1,2-dioxygenase; CTD, lipid, isozyme, intradiol, oxido; HET: PCF; 2.65A {Pseudomonas putida} Back     alignment and structure
>1uxz_A Cellulase B; carbohydrate binding module, CBM6, mixted BETA1, 3-1, 4 linked glucan; 1.4A {Cellvibrio mixtus} SCOP: b.18.1.10 PDB: 1uy0_A* 1uyx_A* 1uyy_A* 1uyz_A* 1uz0_A* Back     alignment and structure
>2boy_A 3-chlorocatechol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: BHO LPP; 1.9A {Rhodococcus opacus} Back     alignment and structure
>3th1_A Chlorocatechol 1,2-dioxygenase; catechol 1,2-dioxygenase family, oxidoreductase, iron bindin; HET: 3PH GOL; 3.40A {Pseudomonas putida} Back     alignment and structure
>2bum_B Protocatechuate 3,4-dioxygenase beta chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_B 1eoa_B 1eob_B* 1eoc_B* 1eo9_B 2buq_B 2bur_B* 2bux_B 2buy_B 2buz_B* 2bv0_B* 2buu_B* 2but_B* 2buv_B* 2buw_B* Back     alignment and structure
>3t63_M 3,4-PCD, protocatechuate 3,4-dioxygenase beta chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 3mi1_M* 3mv4_M* 3mi5_M* 3mfl_M* 3mv6_M* 3t67_M 3pca_M* 3pcb_M* 2pcd_M* 3pce_M* 3pcf_M* 3pcc_M* 3pch_M* 3pci_M* 3pcj_M* 3pck_M* 3pcl_M* 3pcm_M* 3pcn_M* 3pcg_M ... Back     alignment and structure
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} Back     alignment and structure
>1tmx_A Hydroxyquinol 1,2-dioxygenase; beta barrel, oxidoreductase; HET: HGX; 1.75A {Pimelobacter simplex} Back     alignment and structure
>2bum_A Protocatechuate 3,4-dioxygenase alpha chain; oxidoreductase, aromatic degradation, non-heme iron, beta-SA mixed alpha/beta structure; 1.80A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1eo2_A 1eob_A* 1eoc_A* 1eoa_A 2buq_A 2bur_A* 2but_A 2buu_A* 2buv_A* 2buw_A* 1eo9_A 2bux_A 2buy_A 2buz_A* 2bv0_A* Back     alignment and structure
>1dmh_A 1,2-CTD, catechol 1,2-dioxygenase; aromatic hydrocarbon degradation, alpha/beta FO metalloenzyme, substrate, oxidoreductase; HET: LIO; 1.70A {Acinetobacter SP} SCOP: b.3.6.1 PDB: 1dlq_A* 1dlm_A* 1dlt_A* Back     alignment and structure
>3n9t_A PNPC; phospholipid binds, N-terminal helix tunnel, oxidoreductase; HET: HGX FLC; 2.00A {Pseudomonas putida} Back     alignment and structure
>2cdp_A Beta-agarase 1; carbohydrate-binding module, hydrolase; HET: GAL AAL; 1.59A {Saccharophagus degradans} PDB: 2cdo_A* Back     alignment and structure
>3hhy_A 1,2-CTD, catechol 1,2-dioxygenase; beta-sandwich, aromatic hydrocarbons catabolism, dioxygenase metal-binding, oxidoreductase; HET: 6PL; 1.55A {Rhodococcus opacus} PDB: 3hhx_A* 3hgi_A* 3hj8_A* 3hjq_A* 3hjs_A* 3i4v_A* 3hkp_A* 3i51_A* 3i4y_A* Back     alignment and structure
>3t63_A 3,4-PCD, protocatechuate 3,4-dioxygenase alpha chain; iron III dependent non-heme intradiol dioxygenase, oxidoredu; HET: GOL; 1.54A {Pseudomonas putida} PDB: 1ykl_A* 1ykm_A* 1ykn_A* 1yko_A* 1ykp_A* 2pcd_A 1ykk_A* 3lmx_A* 3lxv_A* 3mfl_A* 3mi1_A* 3mi5_A* 3lkt_A* 3mv6_A* 3pca_A* 3pcb_A* 3pcc_A* 3pcd_A 3pce_A* 3pcf_A* ... Back     alignment and structure
>1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* Back     alignment and structure
>3o5u_A Chlorocatechol 1,2-dioxygenase; beta barrel,oxidoreductase, oxidoreductase; HET: MYY DHB; 2.35A {Rhodococcus opacus} PDB: 3o32_A* 1s9a_A* 3o6j_A* 3o6r_A* Back     alignment and structure
>1w9s_A BH0236 protein, BHCBM6; carbohydrate-binding module, lectin, beta-glucan, carbohydrate binding, glycoside hydrolase; 1.59A {Bacillus halodurans} SCOP: b.18.1.10 PDB: 1w9t_A* 1w9w_A* Back     alignment and structure
>2h4e_A Transthyretin; amyloid, sulfite, familial amyloidotic polyne transport protein; HET: CSU; 1.45A {Homo sapiens} SCOP: b.3.4.1 PDB: 2wqa_A* 1zcr_A 1zd6_A 2trh_A 1bz8_A 2qpf_A 1tfp_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 480
d1nkga2171 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, 5e-57
d1nkga187 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, m 2e-04
d1nkga3250 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N 0.002
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Length = 171 Back     information, alignment and structure

class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Rhamnogalacturonase B, RhgB, C-terminal domain
domain: Rhamnogalacturonase B, RhgB, C-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

 Score =  184 bits (469), Expect = 5e-57
 Identities = 39/196 (19%), Positives = 60/196 (30%), Gaps = 33/196 (16%)

Query: 284 GPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTI 343
           G T+++IG  D     F       +        HP   R                L YT+
Sbjct: 2   GTTIFKIGEWDGQPTGF-------RNAANQLRMHPSDSRMSSW----------GPLTYTV 44

Query: 344 GVSDYSKDWFFAQVVREMDNKTYQGTTWQIKFKLDHVDRNSSYKLRVAIASATL-AELQV 402
           G S  + D+  A                 IKF         +  LR+    +      Q 
Sbjct: 45  GSSALT-DFPMAVF-------KSVNNPVTIKFTATSAQT-GAATLRIGTTLSFAGGRPQA 95

Query: 403 RVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIPGTRFIEGENTIFLKQPRCTS 462
            +N    + P   T        + R    GL  +Y V+IP    + G NTI +     +S
Sbjct: 96  TINSYTGSAPAAPT--NLDSRGVTRGAYRGLGEVYDVSIPSGTIVAGTNTITINVISGSS 153

Query: 463 PFQ----GIMYDYIRL 474
                    ++D + L
Sbjct: 154 GDTYLSPNFIFDCVEL 169
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Length = 87 Back     information, alignment and structure
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
d1nkga2171 Rhamnogalacturonase B, RhgB, C-terminal domain {As 100.0
d1nkga3250 Rhamnogalacturonase B, RhgB, N-terminal domain {As 99.9
d1nkga187 Rhamnogalacturonase B, RhgB, middle domain {Asperg 99.55
d1h8la179 Carboxypeptidase D C-terminal domain {Crested duck 98.67
d1vlfn179 Transhydroxylase beta subunit, BthL, C-terminal do 98.5
d1uwya1107 Carboxypeptidase M C-terminal domain {Human (Homo 98.01
d1xpna_170 Hypothetical protein PA1324 {Pseudomonas aeruginos 96.13
d2b59b296 Cellulosomal scaffolding protein A {Clostridium th 94.31
d2burb1238 Protocatechuate-3,4-dioxygenase, beta chain {Acine 94.18
d1w9sa_134 Hypothetical protein BH0236 {Bacillus halodurans [ 93.63
d3pcca_200 Protocatechuate-3,4-dioxygenase, alpha chain {Pseu 92.66
d3pccm_236 Protocatechuate-3,4-dioxygenase, beta chain {Pseud 92.5
d1dmha_309 Catechol 1,2-dioxygenase {Acinetobacter calcoaceti 91.89
d2bura1202 Protocatechuate-3,4-dioxygenase, alpha chain {Acin 91.63
d1od3a_132 Putative xylanase {Clostridium stercorarium [TaxId 91.24
d1s9aa_256 Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus 90.71
d1uxxx_125 Carbohydrate binding module from xylanase U {Clost 90.43
d1cwva194 Invasin {Yersinia pseudotuberculosis [TaxId: 633]} 87.12
d1uxza_131 Cellulase B (lichenase 5a) {Cellvibrio mixtus [Tax 86.96
d1uy4a_132 Putative xylanase {Clostridium stercorarium [TaxId 85.96
d1jz8a3207 beta-Galactosidase {Escherichia coli [TaxId: 562]} 85.96
d2je8a4192 Beta-mannosidase {Bacteroides thetaiotaomicron [Ta 80.11
>d1nkga2 b.18.1.25 (A:338-508) Rhamnogalacturonase B, RhgB, C-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
class: All beta proteins
fold: Galactose-binding domain-like
superfamily: Galactose-binding domain-like
family: Rhamnogalacturonase B, RhgB, C-terminal domain
domain: Rhamnogalacturonase B, RhgB, C-terminal domain
species: Aspergillus aculeatus [TaxId: 5053]

Probab=100.00  E-value=2.7e-49  Score=365.68  Aligned_cols=164  Identities=24%  Similarity=0.341  Sum_probs=150.2

Q ss_pred             CCCeEEEeccCCCccccccCCCCccccccccccCCchhhcccchhcccccCCCCCeeEEeeccCCCCCceeEEEEEecCC
Q 011661          284 GPTLWEIGIPDRSAREFNVPDPDPKYVNRLFVNHPDRFRQYGLWSRYTELYPNEDLVYTIGVSDYSKDWFFAQVVREMDN  363 (480)
Q Consensus       284 ~~~LweIG~~Drta~eF~~~d~~~~~~~k~~~~hp~~~R~~glW~~y~~~~P~~dl~ytVG~S~~~~Dw~ya~~~~~~~~  363 (480)
                      |++|||||+|||++.||+++|       ++++|||+|+||| -|+         +++||||+|++ +|||||||+  +.+
T Consensus         2 G~tiW~IG~pDrsa~eF~~~~-------~~~~~hp~~~R~~-~w~---------~l~ytVG~Sd~-~Dw~~a~~~--~~~   61 (171)
T d1nkga2           2 GTTIFKIGEWDGQPTGFRNAA-------NQLRMHPSDSRMS-SWG---------PLTYTVGSSAL-TDFPMAVFK--SVN   61 (171)
T ss_dssp             CSEEEEEECSSSSCTTSBTHH-------HHTTSCTTCTTSC-CCC---------SCEEETTTSCG-GGSBSEEET--TTT
T ss_pred             CCeEEEccCCCCCchhhcCcc-------cchhcCccchhcc-CCC---------CcEEEeCCCCc-ccccEEEEc--CCC
Confidence            789999999999999999864       7899999999999 484         69999999998 599999996  344


Q ss_pred             cccCcccEEEEEEeCCCCCCCcEEEEEEEecc-CCCeEEEEEcCCCCCCCcccccccCCCCeeeceeeeeeeEEEEEEee
Q 011661          364 KTYQGTTWQIKFKLDHVDRNSSYKLRVAIASA-TLAELQVRVNDPNANRPLFTTGLIGRDNAIARHGIHGLYLLYHVNIP  442 (480)
Q Consensus       364 ~~~~~~~w~I~F~L~~~~~~~~~tLriala~a-~~~~~~V~vNg~~~~~p~~~~~~~~~~~~i~R~~~~G~~~~~~~~ip  442 (480)
                           ++|+|+|+|++++ .++|||||+||+| +++++||+|||+..  ++|.++.++++|||+||++||++++++|+||
T Consensus        62 -----~~w~I~F~L~~~~-~~~~tLrI~la~a~a~~~~qV~vN~~~~--~~~~~~~~~~~~~i~R~~~~g~~~~~~~~iP  133 (171)
T d1nkga2          62 -----NPVTIKFTATSAQ-TGAATLRIGTTLSFAGGRPQATINSYTG--SAPAAPTNLDSRGVTRGAYRGLGEVYDVSIP  133 (171)
T ss_dssp             -----CCEEEEEEECGGG-CSCEEEEEEEEEEETTCEEEEEETTEEC--CCCCCCCCCCSCCGGGTCCCSCCCEEEEEEC
T ss_pred             -----CCEEEEEEcCccc-CCceEEEEehhcccCCCCeEEEECCcCC--CCccCCccCCCCceeccccccceEEEEEEec
Confidence                 7999999999876 5899999999998 47899999999765  6788899999999999999999999999999


Q ss_pred             CCCeeeeecEEEEEeecCCCC--Cc--eEEEEEEEEe
Q 011661          443 GTRFIEGENTIFLKQPRCTSP--FQ--GIMYDYIRLE  475 (480)
Q Consensus       443 a~~L~~G~NtI~l~~~~gss~--~~--~vmyD~I~Le  475 (480)
                      +++|++|+|+|+|++++|+++  |+  +||||||||.
T Consensus       134 a~~L~~G~Nti~lt~~~gs~~~~~L~p~~~yD~i~L~  170 (171)
T d1nkga2         134 SGTIVAGTNTITINVISGSSGDTYLSPNFIFDCVELF  170 (171)
T ss_dssp             TTSSCSEEEEEEEEEECSCCCSGGGSSEEEEEEEEEE
T ss_pred             hHHeEecceEEEEEecCCCCCccccCCceeeEEhhhh
Confidence            999999999999999999886  66  9999999996
>d1nkga3 b.30.5.10 (A:1-250) Rhamnogalacturonase B, RhgB, N-terminal domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1nkga1 b.3.1.2 (A:251-337) Rhamnogalacturonase B, RhgB, middle domain {Aspergillus aculeatus [TaxId: 5053]} Back     information, alignment and structure
>d1h8la1 b.3.2.1 (A:305-383) Carboxypeptidase D C-terminal domain {Crested duck (Lophonetta specularioides) [TaxId: 8836]} Back     information, alignment and structure
>d1vlfn1 b.3.5.1 (N:196-274) Transhydroxylase beta subunit, BthL, C-terminal domain {Pelobacter acidigallici [TaxId: 35816]} Back     information, alignment and structure
>d1uwya1 b.3.2.1 (A:297-403) Carboxypeptidase M C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xpna_ b.3.7.1 (A:) Hypothetical protein PA1324 {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2b59b2 b.3.2.2 (B:8-103) Cellulosomal scaffolding protein A {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d2burb1 b.3.6.1 (B:303-540) Protocatechuate-3,4-dioxygenase, beta chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1w9sa_ b.18.1.10 (A:) Hypothetical protein BH0236 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d3pcca_ b.3.6.1 (A:) Protocatechuate-3,4-dioxygenase, alpha chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d3pccm_ b.3.6.1 (M:) Protocatechuate-3,4-dioxygenase, beta chain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1dmha_ b.3.6.1 (A:) Catechol 1,2-dioxygenase {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d2bura1 b.3.6.1 (A:4-200) Protocatechuate-3,4-dioxygenase, alpha chain {Acinetobacter calcoaceticus, adp1 [TaxId: 471]} Back     information, alignment and structure
>d1od3a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure
>d1s9aa_ b.3.6.1 (A:) Chlorocatechol 1,2-dioxygenase {Rhodococcus opacus [TaxId: 37919]} Back     information, alignment and structure
>d1uxxx_ b.18.1.10 (X:) Carbohydrate binding module from xylanase U {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1cwva1 b.1.14.1 (A:503-596) Invasin {Yersinia pseudotuberculosis [TaxId: 633]} Back     information, alignment and structure
>d1uxza_ b.18.1.10 (A:) Cellulase B (lichenase 5a) {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1uy4a_ b.18.1.10 (A:) Putative xylanase {Clostridium stercorarium [TaxId: 1510]} Back     information, alignment and structure
>d1jz8a3 b.18.1.5 (A:13-219) beta-Galactosidase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2je8a4 b.18.1.5 (A:28-219) Beta-mannosidase {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure