Citrus Sinensis ID: 011672

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480
MTGLVMVTKGSGCAGGDGGNGKATKGARTTEEEQNQLSLVAFVMAALRKSMVSCRVERGEDVISAVHNMEIGCPTNVRHITHVTFDRFNGFLGLPVEFEVEVPCRVPSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNTEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETASGGSSPVSSHSSDQQSEEGFDSEQEMDTSCELRGPPSDYDDHAHNCQSSEDEDEDEGVGEGESLSEIEECFLRRLDVKQEVRNSFLEQAVDDMQGDYGSPRSCSKLNPESGIAFTDSKKKNSSSCPSDAEGSGASLVTAEGKIYSRSPLQGHENADDVEMVDKTMDSILPLQSSVSNKCV
ccccEEEEcccccccccccccccccccccHHHHHHHcHHHHHHHHHHHcccHHHHccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccHHHHHccccccccccHHHHHHHHHHHHHcccccEEcccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccHHHHHccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
ccEEEEEEccccccccccccccccccccccHHcccHHHHHHHHHHHHHHHcEEEEEcccccccccccccEcccccccEEEEEEEEcccccccccccccccccccccccccccEccccHHHHEHEHccccccccHHHHHHHHHHHHHcccccccEEEEccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccEHcccHccccccccccccccc
MTGLVMVTkgsgcaggdggngkatkgartteEEQNQLSLVAFVMAALRKSMVSCRVERGEDVISAVHNmeigcptnvrhiTHVTfdrfngflglpvefevevpcrvpsasasvfgvsaesmqcsfdskgnsvPTILLLMQERLYsqgglkaegifrinpensqeeHVRDQlnrgivpdnidVHCLAGLIKAWFRelpqgvldglspeqvlqcNTEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAmvfapnmtqmsdpLTALMHAVQVMNLLKTLIMKTLREreetasggsspvsshssdqqseegfdseqemdtscelrgppsdyddhahncqssedededegvgegeslSEIEECFLRRLDVKQEVRNSFLEQAVDdmqgdygsprscsklnpesgiaftdskkknssscpsdaegsgaslvtaegkiysrsplqghenaddveMVDKTMDSilplqssvsnkcv
MTGLVMVTkgsgcaggdggngkATKGARTTEEEQNQLSLVAFVMAALRKSMVSCRVERGEDVISAVHNMEIGCPTNVRHITHVTFDRFNGFLGLPVEFEVEVPCRVPSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNTEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREEtasggsspvsshssdQQSEEGFDSEQEMDTSCELRGPPSDYDDHAHNCQSSEDEDEDEGVGEGESLSEIEECFLRRLDVKQEVRNSFLEQAVDDMQGDYGSPRSCSKLNPESGIAFTDSKKKNSSSCPSDAEGSGASLVTAEGKIysrsplqghenADDVEMVDKTMDsilplqssvsnkcv
MTGLVMVTkgsgcaggdggngkatkgaRTTEEEQNQLSLVAFVMAALRKSMVSCRVERGEDVISAVHNMEIGCPTNVRHITHVTFDRFNGFLGLPVEFEVEVPCRVPSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNTEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETAsggsspvsshssdqqsEEGFDSEQEMDTSCELRGPPSDYDDHAHNCQssedededegvgegeslseieeCFLRRLDVKQEVRNSFLEQAVDDMQGDYGSPRSCSKLNPESGIAFTDSKKKNSSSCPSDAEGSGASLVTAEGKIYSRSPLQGHENADDVEMVDKTMDSILPLQSSVSNKCV
************************************LSLVAFVMAALRKSMVSCRVERGEDVISAVHNMEIGCPTNVRHITHVTFDRFNGFLGLPVEFEVEVPCRVPSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRI************QLNRGIVPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNTEEESVELVKQLKPTEAALLNWAVDLMADVVE*********RNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKT****************************************************************************ECFLRRLDVKQ*****************************************************************************************************
*****************************************FVMAALRKSMVSC**ER***VISAVHNMEIGCPTNVRHIT************************************AESMQCS*DSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNTEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLRERE********************************************************************************************************************************************************************************SVS****
MTGLVMVTKGSGCAG*****************EQNQLSLVAFVMAALRKSMVSCRVERGEDVISAVHNMEIGCPTNVRHITHVTFDRFNGFLGLPVEFEVEVPCRVPSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPEN********QLNRGIVPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNTEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLR***********************************CELRGPPSDYDDHAH********************SEIEECFLRRLDVKQEVRNSFLEQAVDDMQGDYGSPRSCSKLNPESGIAF********************SLVTAEGKIYSRSPLQGHENADDVEMVDKTMDSILPLQSSVSNKCV
*TGLVMVTKGS**********************QNQLSLVAFVMAALRKSMVSCRVERGEDVISAVHNMEIGCPTNVRHITHVTFDRFNGFLGLPVEFEVEVPCRVPSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNTEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREE**********************************************************************************************************KLNPESGIAFTDS*******************************************VDKTMDSILPLQ*SVS**C*
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MTGLVMVTKGSGCAGGDGGNGKATKGARTTEEEQNQLSLVAFVMAALRKSMVSCRVERGEDVISAVHNMEIGCPTNVRHITHVTFDRFNGFLGLPVEFEVEVPCRVPSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNTEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLREREETASGGSSPVSSHSSDQQSEEGFDSEQEMDTSCELRGPPSDYDDHAHNCQSSEDEDEDEGVGEGESLSEIEECFLRRLDVKQEVRNSFLEQAVDDMQGDYGSPRSCSKLNPESGIAFTDSKKKNSSSCPSDAEGSGASLVTAEGKIYSRSPLQGHENADDVEMVDKTMDSILPLQSSVSNKCV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query480 2.2.26 [Sep-21-2011]
Q54Y72338 Rho GTPase-activating pro yes no 0.389 0.553 0.317 3e-19
Q8C4V1 747 Rho GTPase-activating pro yes no 0.379 0.243 0.326 4e-15
Q5U2Z7 748 Rho GTPase-activating pro no no 0.379 0.243 0.326 5e-15
Q8N264 748 Rho GTPase-activating pro no no 0.372 0.239 0.316 4e-14
Q54QF4 909 Mental retardation GTPase no no 0.318 0.168 0.292 5e-14
Q54MI9970 Rho GTPase-activating pro no no 0.277 0.137 0.279 8e-14
Q101641275 Probable Rho-type GTPase- yes no 0.335 0.126 0.298 2e-13
Q8BL80 702 Rho GTPase-activating pro no no 0.3 0.205 0.335 1e-12
Q69ZH9 1483 Rho GTPase-activating pro no no 0.370 0.120 0.280 3e-12
Q7Z5H3 698 Rho GTPase-activating pro no no 0.3 0.206 0.329 2e-11
>sp|Q54Y72|GACA_DICDI Rho GTPase-activating protein gacA OS=Dictyostelium discoideum GN=gacA PE=3 SV=1 Back     alignment and function desciption
 Score = 96.7 bits (239), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 109/192 (56%), Gaps = 5/192 (2%)

Query: 113 VFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLN 172
           VFGV   +++   + +G  VP IL LM+  L   GGL+ EGIFR+  E ++ + +++ +N
Sbjct: 143 VFGVDPNTLE-HVEDEGFRVPYILALMKRSLIDNGGLQQEGIFRLAGEQTEIKRLKEAMN 201

Query: 173 RGIVPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNTEEESVELVKQLKPTEAAL 232
           R     + D++ +A LIK W+RELP  +L+ +  E++      +E V+  K L   + +L
Sbjct: 202 RNDFTSSTDINTVASLIKIWYRELPTPILNSIPTEKIFYSTDIDECVQSAKNLPEPQKSL 261

Query: 233 LNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQM--SDPLTALMHAVQVMNLLKTLIM 290
           L+W + L+  V    + NKM A+N+A+V APN+  +  S+P+  L+ + + +  L  ++ 
Sbjct: 262 LDWLMHLLLMVSSFSDVNKMTAQNLAIVVAPNLYDVSSSNPMEGLVLSQKCVQFLHNVLS 321

Query: 291 K--TLREREETA 300
               + +RE  A
Sbjct: 322 HKVAVHKRESVA 333
Rho GTPase-activating protein involved in the signal transduction pathway.
Dictyostelium discoideum (taxid: 44689)
>sp|Q8C4V1|RHG24_MOUSE Rho GTPase-activating protein 24 OS=Mus musculus GN=Arhgap24 PE=2 SV=2 Back     alignment and function description
>sp|Q5U2Z7|RHG24_RAT Rho GTPase-activating protein 24 OS=Rattus norvegicus GN=Arhgap24 PE=2 SV=2 Back     alignment and function description
>sp|Q8N264|RHG24_HUMAN Rho GTPase-activating protein 24 OS=Homo sapiens GN=ARHGAP24 PE=1 SV=2 Back     alignment and function description
>sp|Q54QF4|MGP4_DICDI Mental retardation GTPase activating protein homolog 4 OS=Dictyostelium discoideum GN=mgp4 PE=3 SV=1 Back     alignment and function description
>sp|Q54MI9|GACK_DICDI Rho GTPase-activating protein gacK OS=Dictyostelium discoideum GN=gacK PE=3 SV=1 Back     alignment and function description
>sp|Q10164|RGA2_SCHPO Probable Rho-type GTPase-activating protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rga2 PE=1 SV=1 Back     alignment and function description
>sp|Q8BL80|RHG22_MOUSE Rho GTPase-activating protein 22 OS=Mus musculus GN=Arhgap22 PE=1 SV=2 Back     alignment and function description
>sp|Q69ZH9|RHG23_MOUSE Rho GTPase-activating protein 23 OS=Mus musculus GN=Arhgap23 PE=1 SV=2 Back     alignment and function description
>sp|Q7Z5H3|RHG22_HUMAN Rho GTPase-activating protein 22 OS=Homo sapiens GN=ARHGAP22 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
225436823479 PREDICTED: uncharacterized protein LOC10 0.902 0.903 0.751 0.0
255559366446 gtpase activating protein, putative [Ric 0.920 0.991 0.691 1e-176
449462300481 PREDICTED: uncharacterized protein LOC10 0.966 0.964 0.691 1e-174
356500248456 PREDICTED: uncharacterized protein LOC10 0.916 0.964 0.708 1e-170
356535579458 PREDICTED: uncharacterized protein LOC10 0.931 0.975 0.713 1e-169
356505493467 PREDICTED: uncharacterized protein LOC10 0.962 0.989 0.669 1e-166
296086643379 unnamed protein product [Vitis vinifera] 0.756 0.957 0.720 1e-157
3695063432 rac GTPase activating protein 3 [Lotus j 0.883 0.981 0.671 1e-149
297813995423 hypothetical protein ARALYDRAFT_490253 [ 0.854 0.969 0.664 1e-144
224131264320 predicted protein [Populus trichocarpa] 0.597 0.896 0.859 1e-144
>gi|225436823|ref|XP_002270566.1| PREDICTED: uncharacterized protein LOC100252743 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/438 (75%), Positives = 370/438 (84%), Gaps = 5/438 (1%)

Query: 32  EEQNQLSLVAFVMAALRKSMVSCRVERGEDVISAVHNMEIGCPTNVRHITHVTFDRFNGF 91
           EEQNQLS++AF++ ALRKSMV+CRV+R +DVISAV  MEIG PTNVRHITHVTFDRFNGF
Sbjct: 31  EEQNQLSVMAFLLTALRKSMVACRVDRSDDVISAVQQMEIGWPTNVRHITHVTFDRFNGF 90

Query: 92  LGLPVEFEVEVPCRVPSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKA 151
           LGLP EFEVEVP RVPSASASVFGVSAESMQCS+DSKGNSVPTILLLMQERLYSQ GLKA
Sbjct: 91  LGLPSEFEVEVPGRVPSASASVFGVSAESMQCSYDSKGNSVPTILLLMQERLYSQEGLKA 150

Query: 152 EGIFRINPENSQEEHVRDQLNRGIVPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQ 211
           EGIFRINPENSQEE VRDQLNRGIVP +IDVHCLAGLIKAWFRELP G+LDGLSPEQVLQ
Sbjct: 151 EGIFRINPENSQEEIVRDQLNRGIVPTDIDVHCLAGLIKAWFRELPSGILDGLSPEQVLQ 210

Query: 212 CNTEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDP 271
           C+TEEESVEL+KQL+PTEAALL+WA+DLMADVVEEEE NKMNARNIAMVFAPNMTQMSDP
Sbjct: 211 CSTEEESVELIKQLRPTEAALLSWAIDLMADVVEEEEFNKMNARNIAMVFAPNMTQMSDP 270

Query: 272 LTALMHAVQVMNLLKTLIMKTLREREETASGGSSPVSSHSSDQQSEEGFDSEQEMDTSCE 331
           LTALMHAVQVMNLLKTLI KTLREREE+ +GG SP+SSHSSD Q++E FDS+QEMDTSCE
Sbjct: 271 LTALMHAVQVMNLLKTLITKTLREREESPAGGYSPLSSHSSDGQTDEEFDSQQEMDTSCE 330

Query: 332 LRGPPSDY-DDHAHNCQSSEDEDEDEGVGEGESLSEIEECFLRRLDVKQEVRNSFLEQAV 390
           LR P SDY DDHAH   SSE EDED+   +  S+  ++ECFLR+LD  ++V   F E+  
Sbjct: 331 LRRPTSDYDDDHAHYSHSSEHEDEDDDEVQSPSM--MQECFLRQLDENEKVTEIFPEETA 388

Query: 391 DDMQGDYGSPRSCSKLNPESGIAFTDSKKKNSSSCPSDA-EGSGASLVTAEGKIYSRSPL 449
            D QG++G P +C  LN ESG +FTDSK  +S    SD  E SG S +  E K    SP 
Sbjct: 389 RDSQGEHGIPTNCV-LNVESGASFTDSKNGSSGLSTSDGEEDSGESSIVVEQKANKNSPS 447

Query: 450 QGHENADDVEMVDKTMDS 467
           +G+E+ DDVEMVDK ++S
Sbjct: 448 KGYEDTDDVEMVDKLVES 465

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255559366|ref|XP_002520703.1| gtpase activating protein, putative [Ricinus communis] gi|223540088|gb|EEF41665.1| gtpase activating protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449462300|ref|XP_004148879.1| PREDICTED: uncharacterized protein LOC101220148 [Cucumis sativus] gi|449491523|ref|XP_004158925.1| PREDICTED: uncharacterized protein LOC101230412 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356500248|ref|XP_003518945.1| PREDICTED: uncharacterized protein LOC100807134 [Glycine max] Back     alignment and taxonomy information
>gi|356535579|ref|XP_003536322.1| PREDICTED: uncharacterized protein LOC100801481 [Glycine max] Back     alignment and taxonomy information
>gi|356505493|ref|XP_003521525.1| PREDICTED: uncharacterized protein LOC100812700 [Glycine max] Back     alignment and taxonomy information
>gi|296086643|emb|CBI32278.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|3695063|gb|AAC62626.1| rac GTPase activating protein 3 [Lotus japonicus] Back     alignment and taxonomy information
>gi|297813995|ref|XP_002874881.1| hypothetical protein ARALYDRAFT_490253 [Arabidopsis lyrata subsp. lyrata] gi|297320718|gb|EFH51140.1| hypothetical protein ARALYDRAFT_490253 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|224131264|ref|XP_002321041.1| predicted protein [Populus trichocarpa] gi|222861814|gb|EEE99356.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query480
TAIR|locus:2139330430 AT4G03100 [Arabidopsis thalian 0.704 0.786 0.723 1.4e-126
TAIR|locus:2176392466 AT5G22400 [Arabidopsis thalian 0.639 0.658 0.637 7.1e-100
TAIR|locus:2062770455 ROPGAP3 "ROP guanosine triphos 0.541 0.571 0.718 7.4e-98
TAIR|locus:2080762435 AT3G11490 [Arabidopsis thalian 0.547 0.604 0.682 7.8e-94
TAIR|locus:2199948331 AT1G08340 [Arabidopsis thalian 0.566 0.821 0.619 3.7e-87
DICTYBASE|DDB_G0278381338 gacA "papD-like domain-contain 0.389 0.553 0.317 2.7e-24
MGI|MGI:1922647 747 Arhgap24 "Rho GTPase activatin 0.370 0.238 0.324 6.1e-14
UNIPROTKB|E1C6N8 737 ARHGAP24 "Uncharacterized prot 0.370 0.241 0.314 9.9e-14
UNIPROTKB|E2RFM4 749 ARHGAP24 "Uncharacterized prot 0.370 0.237 0.314 3.7e-13
RGD|1306669 748 Arhgap24 "Rho GTPase activatin 0.370 0.237 0.324 4.2e-13
TAIR|locus:2139330 AT4G03100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1243 (442.6 bits), Expect = 1.4e-126, P = 1.4e-126
 Identities = 251/347 (72%), Positives = 275/347 (79%)

Query:     1 MTGLVMVTXXXXXXXXXXXXXXXXXXXRTTEEEQNQ--LSLVAFVMAALRKSMVSCRVER 58
             MTGLVM+T                      EEEQNQ  LSLV F++ ALRKS+VSCRV+ 
Sbjct:     1 MTGLVMMTKGGGCGGGGKGGRRKSTAEEEEEEEQNQQQLSLVEFLLTALRKSVVSCRVDN 60

Query:    59 GED-------VISAVHNMEIGCPTNVRHITHVTFDRFNGFLGLPVEFEVEVPCRVPSASA 111
              +D       + SAVH+MEIG PTNVRHITHVTFDRF+GFLGLP E +VE+PCRVPSAS 
Sbjct:    61 RQDDGGVGGGISSAVHHMEIGWPTNVRHITHVTFDRFHGFLGLPHELQVEIPCRVPSASV 120

Query:   112 SVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQL 171
             SVFGVSAESMQCS+D KGNSVPTILLLMQERLYSQ GLKAEGIFRINPENSQEEHVRDQL
Sbjct:   121 SVFGVSAESMQCSYDEKGNSVPTILLLMQERLYSQQGLKAEGIFRINPENSQEEHVRDQL 180

Query:   172 NRGIVPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNTEEESVELVKQLKPTEAA 231
             NRGIVP+NIDVHCLAGLIKAWFRELP GVLDGLSPE+VL CNTE+ESVEL+KQLKPTE+A
Sbjct:   181 NRGIVPENIDVHCLAGLIKAWFRELPSGVLDGLSPEEVLNCNTEDESVELIKQLKPTESA 240

Query:   232 LLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMK 291
             LLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQM+DPLTALMHAVQVMNLLKTLI K
Sbjct:   241 LLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMTDPLTALMHAVQVMNLLKTLITK 300

Query:   292 TLREREETAXXXXXXXXXXXXXXXXEEGFDSEQEMDTSCELRGPPSD 338
             TL EREE A                +   D+ Q+M+ SCE +   S+
Sbjct:   301 TLAEREENATGSEGYSPSHSSNSQTDSDSDNAQDMEVSCESQATDSE 347
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0007165 "signal transduction" evidence=IEA
GO:0030675 "Rac GTPase activator activity" evidence=ISS
GO:0000226 "microtubule cytoskeleton organization" evidence=RCA
GO:0000911 "cytokinesis by cell plate formation" evidence=RCA
GO:0008283 "cell proliferation" evidence=RCA
TAIR|locus:2176392 AT5G22400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062770 ROPGAP3 "ROP guanosine triphosphatase (GTPase)-activating protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080762 AT3G11490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2199948 AT1G08340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0278381 gacA "papD-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:1922647 Arhgap24 "Rho GTPase activating protein 24" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E1C6N8 ARHGAP24 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFM4 ARHGAP24 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1306669 Arhgap24 "Rho GTPase activating protein 24" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00023609001
SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (412 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
smart00324174 smart00324, RhoGAP, GTPase-activator protein for R 1e-32
cd00159169 cd00159, RhoGAP, RhoGAP: GTPase-activator protein 7e-32
pfam00620152 pfam00620, RhoGAP, RhoGAP domain 6e-29
cd04389187 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase- 1e-20
cd04400190 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPas 7e-19
cd04390199 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24 2e-17
cd04404195 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGA 9e-17
cd04381182 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTP 1e-15
cd04386203 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTP 8e-15
cd04393189 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP 2e-14
cd04377186 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGA 7e-14
cd04398192 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPas 2e-13
cd04394202 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGA 9e-13
cd04402192 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP 1e-12
cd04385184 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase- 1e-12
cd04391216 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP 2e-12
cd04407186 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: Rho 7e-11
cd04392208 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP 7e-10
cd04406186 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: Rho 4e-09
cd04376206 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (G 5e-09
cd04395196 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP 8e-09
cd04383188 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPas 1e-08
cd04384195 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPas 2e-08
pfam0078659 pfam00786, PBD, P21-Rho-binding domain 7e-08
cd04372194 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGA 9e-08
cd04379207 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase- 2e-06
cd04373185 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase- 2e-06
cd04375220 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase- 1e-05
cd04387196 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-ac 1e-05
cd04382193 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGA 1e-05
smart0028536 smart00285, PBD, P21-Rho-binding domain 3e-05
cd04403187 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_ 3e-05
cd0109346 cd01093, CRIB_PAK_like, PAK (p21 activated kinase) 5e-05
cd0013242 cd00132, CRIB, PAK (p21 activated kinase) Binding 0.001
cd04409211 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPas 0.003
cd04397213 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPas 0.003
cd04378203 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: Rho 0.004
>gnl|CDD|214618 smart00324, RhoGAP, GTPase-activator protein for Rho-like GTPases Back     alignment and domain information 
 Score =  121 bits (307), Expect = 1e-32
 Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 13/171 (7%)

Query: 131 SVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPDNI----DVHCLA 186
            +P I+    E L  +G L  EGI+R++   S+ + +RD  + G  PD      DVH +A
Sbjct: 2   PIPIIVEKCIEYLEKRG-LDTEGIYRVSGSKSRVKELRDAFDSGPDPDLDLSEYDVHDVA 60

Query: 187 GLIKAWFRELPQGVL-DGLSPE--QVLQCNTEEESV----ELVKQLKPTEAALLNWAVDL 239
           GL+K + RELP+ ++   L  E  +  +   E E +    EL+  L P   A L + +  
Sbjct: 61  GLLKLFLRELPEPLITYELYEEFIEAAKLEDETERLRALRELLSLLPPANRATLRYLLAH 120

Query: 240 MADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTA-LMHAVQVMNLLKTLI 289
           +  V E  E NKM ARN+A+VF P + +  D   A L        +++ LI
Sbjct: 121 LNRVAEHSEENKMTARNLAIVFGPTLLRPPDGEVASLKDIRHQNTVIEFLI 171

GTPase activator proteins towards Rho/Rac/Cdc42-like small GTPases. etter domain limits and outliers. Length = 174
>gnl|CDD|238090 cd00159, RhoGAP, RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases Back     alignment and domain information
>gnl|CDD|216027 pfam00620, RhoGAP, RhoGAP domain Back     alignment and domain information
>gnl|CDD|239854 cd04389, RhoGAP_KIAA1688, RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain Back     alignment and domain information
>gnl|CDD|239865 cd04400, RhoGAP_fBEM3, RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins Back     alignment and domain information
>gnl|CDD|239855 cd04390, RhoGAP_ARHGAP22_24_25, RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain Back     alignment and domain information
>gnl|CDD|239869 cd04404, RhoGAP-p50rhoGAP, RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) Back     alignment and domain information
>gnl|CDD|239846 cd04381, RhoGap_RalBP1, RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin Back     alignment and domain information
>gnl|CDD|239851 cd04386, RhoGAP_nadrin, RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins Back     alignment and domain information
>gnl|CDD|239858 cd04393, RhoGAP_FAM13A1a, RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins Back     alignment and domain information
>gnl|CDD|239842 cd04377, RhoGAP_myosin_IX, RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins Back     alignment and domain information
>gnl|CDD|239863 cd04398, RhoGAP_fRGD1, RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins Back     alignment and domain information
>gnl|CDD|239859 cd04394, RhoGAP-ARHGAP11A, RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins Back     alignment and domain information
>gnl|CDD|239867 cd04402, RhoGAP_ARHGAP20, RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins Back     alignment and domain information
>gnl|CDD|239850 cd04385, RhoGAP_ARAP, RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs Back     alignment and domain information
>gnl|CDD|239856 cd04391, RhoGAP_ARHGAP18, RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins Back     alignment and domain information
>gnl|CDD|239872 cd04407, RhoGAP_myosin_IXB, RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB Back     alignment and domain information
>gnl|CDD|239857 cd04392, RhoGAP_ARHGAP19, RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins Back     alignment and domain information
>gnl|CDD|239871 cd04406, RhoGAP_myosin_IXA, RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA Back     alignment and domain information
>gnl|CDD|239841 cd04376, RhoGAP_ARHGAP6, RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins Back     alignment and domain information
>gnl|CDD|239860 cd04395, RhoGAP_ARHGAP21, RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins Back     alignment and domain information
>gnl|CDD|239848 cd04383, RhoGAP_srGAP, RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs Back     alignment and domain information
>gnl|CDD|239849 cd04384, RhoGAP_CdGAP, RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA Back     alignment and domain information
>gnl|CDD|144398 pfam00786, PBD, P21-Rho-binding domain Back     alignment and domain information
>gnl|CDD|239837 cd04372, RhoGAP_chimaerin, RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins Back     alignment and domain information
>gnl|CDD|239844 cd04379, RhoGAP_SYD1, RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins Back     alignment and domain information
>gnl|CDD|239838 cd04373, RhoGAP_p190, RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins Back     alignment and domain information
>gnl|CDD|239840 cd04375, RhoGAP_DLC1, RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins Back     alignment and domain information
>gnl|CDD|239852 cd04387, RhoGAP_Bcr, RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins Back     alignment and domain information
>gnl|CDD|239847 cd04382, RhoGAP_MgcRacGAP, RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins Back     alignment and domain information
>gnl|CDD|197628 smart00285, PBD, P21-Rho-binding domain Back     alignment and domain information
>gnl|CDD|239868 cd04403, RhoGAP_ARHGAP27_15_12_9, RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains Back     alignment and domain information
>gnl|CDD|238526 cd01093, CRIB_PAK_like, PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway Back     alignment and domain information
>gnl|CDD|238077 cd00132, CRIB, PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway Back     alignment and domain information
>gnl|CDD|239874 cd04409, RhoGAP_PARG1, RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>gnl|CDD|239862 cd04397, RhoGAP_fLRG1, RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins Back     alignment and domain information
>gnl|CDD|239843 cd04378, RhoGAP_GMIP_PARG1, RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 480
KOG4270577 consensus GTPase-activator protein [Signal transdu 100.0
cd04390199 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPas 100.0
cd04383188 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activato 100.0
cd04372194 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase- 100.0
cd04407186 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPas 100.0
cd04386203 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activa 100.0
cd04391216 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-ac 100.0
cd04389187 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator 100.0
cd04375220 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator 100.0
cd04404195 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase- 100.0
cd04402192 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-ac 100.0
cd04408200 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator 100.0
cd04384195 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activato 100.0
cd04394202 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase- 100.0
cd04403187 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: G 100.0
cd04381182 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activa 100.0
cd04396225 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPas 100.0
cd04378203 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPas 100.0
cd04406186 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPas 100.0
cd04393189 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-ac 100.0
cd04409211 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activato 100.0
cd04397213 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activato 100.0
cd04373185 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator 100.0
cd04395196 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-ac 100.0
cd04398192 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activato 100.0
cd04379207 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator 100.0
cd04387196 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator pr 100.0
cd04377186 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase- 100.0
cd04400190 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activato 100.0
cd04376206 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-acti 100.0
cd04392208 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-ac 100.0
cd04385184 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator 100.0
cd04382193 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase- 100.0
cd04388200 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator pr 100.0
cd04399212 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activato 100.0
cd04374203 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein 100.0
KOG2200674 consensus Tumour suppressor protein p122-RhoGAP/DL 100.0
cd04380220 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activato 100.0
KOG4407 1973 consensus Predicted Rho GTPase-activating protein 100.0
smart00324174 RhoGAP GTPase-activator protein for Rho-like GTPas 100.0
KOG42691112 consensus Rac GTPase-activating protein BCR/ABR [S 99.97
cd00159169 RhoGAP RhoGAP: GTPase-activator protein (GAP) for 99.97
KOG1450650 consensus Predicted Rho GTPase-activating protein 99.96
PF00620151 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members 99.96
KOG4406467 consensus CDC42 Rho GTPase-activating protein [Sig 99.95
KOG1451812 consensus Oligophrenin-1 and related Rho GTPase-ac 99.94
KOG2710412 consensus Rho GTPase-activating protein [Signal tr 99.93
KOG1453918 consensus Chimaerin and related Rho GTPase activat 99.92
KOG1117 1186 consensus Rho- and Arf-GTPase activating protein A 99.9
KOG3564604 consensus GTPase-activating protein [General funct 99.89
KOG4724 741 consensus Predicted Rho GTPase-activating protein 99.86
KOG1452442 consensus Predicted Rho GTPase-activating protein 99.79
KOG42711100 consensus Rho-GTPase activating protein [Signal tr 99.71
cd04401198 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activato 99.65
cd04405235 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPas 99.62
KOG4370514 consensus Ral-GTPase effector RLIP76 [Signal trans 99.26
KOG3565640 consensus Cdc42-interacting protein CIP4 [Cytoskel 99.12
PF08101420 DUF1708: Domain of unknown function (DUF1708); Int 98.42
KOG4724741 consensus Predicted Rho GTPase-activating protein 97.75
KOG1453918 consensus Chimaerin and related Rho GTPase activat 96.31
KOG4271 1100 consensus Rho-GTPase activating protein [Signal tr 96.01
KOG1449 670 consensus Predicted Rho GTPase-activating protein 94.59
smart0028536 PBD P21-Rho-binding domain. Small domains that bin 88.96
KOG1449670 consensus Predicted Rho GTPase-activating protein 87.4
cd0013242 CRIB PAK (p21 activated kinase) Binding Domain (PB 84.72
>KOG4270 consensus GTPase-activator protein [Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=2e-44  Score=385.81  Aligned_cols=241  Identities=54%  Similarity=0.794  Sum_probs=225.0

Q ss_pred             cccccCCCCccceeccccccccccc---ccCCCccccccCCCCCCCCCCCccccchhhhhhccCCCCCCCcHHHHHHHH-
Q 011672           66 VHNMEIGCPTNVRHITHVTFDRFNG---FLGLPVEFEVEVPCRVPSASASVFGVSAESMQCSFDSKGNSVPTILLLMQE-  141 (480)
Q Consensus        66 ~~~~~igwp~~vr~v~~i~~~r~~~---~lGlp~~~~~~~~~~~~~~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~-  141 (480)
                      .+.|+|+|+++.++..|++|++|.+   |+|++.++++..+++.+.....+|||+++.+++.++.++..||.|+..++. 
T Consensus        96 ~~~~kie~~~d~~~~~~~~f~~~~~~~~f~~~~~e~q~~~~rrals~~~~vfgv~~~s~Q~s~~~~~n~vp~i~~l~~~~  175 (577)
T KOG4270|consen   96 ECGMKIEQPTDQRHADHVTFDRKEGEYLFLGLPVEFQPDYHRRALSASETVFGVSTEAMQLSYDPRGNFVPLILHLLQSG  175 (577)
T ss_pred             hhcCccccCcchhhhhhhhhhhhcchhhhccchhhhccccccccccchhhhhcchHHhhhcccccCCCcchhhhHhhhhh
Confidence            4789999999999999999999999   999999999999999999999999999999999999888889999999999 


Q ss_pred             HHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCCCC--CCHHHHHHHHHHHHHhCCCCCCCCCCHHHHHhh---ccHH
Q 011672          142 RLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPDN--IDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQC---NTEE  216 (480)
Q Consensus       142 ~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~~~--~Dvh~vAsLLK~fLReLPePLl~~~ly~~~i~~---~~~e  216 (480)
                      +||.+.|++.|||||++|...+++.||++||.|..+..  .|+|++|++||.||||||+||+++.+|+.|+++   ++.+
T Consensus       176 ~l~~e~Gl~eEGlFRi~~~~sk~e~lr~~ld~g~v~~~~~iDvH~~agllKayLRELPepvl~~nL~~e~~qv~~~~~e~  255 (577)
T KOG4270|consen  176 RLLLEGGLKEEGLFRINGEASKVERLREALDCGVVPDQLYIDVHCLAGLLKAYLRELPEPVLTFNLYKEWTQVQNCENED  255 (577)
T ss_pred             hhhhhcCccccceeccCCCchHHHHHHHHHcCCcccccccCCHHHHHHHHHHHHHhCCCcCCCcccCHHHHHHHhccCHH
Confidence            99999999999999999999999999999999998876  999999999999999999999999999998865   3344


Q ss_pred             H----HHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhHHhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHH
Q 011672          217 E----SVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKT  292 (480)
Q Consensus       217 ~----~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLAiVFaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n~  292 (480)
                      +    +++++.+||+.|+.+|+|++.||+.|++++++|||+++||||||||||+|+.++.++++.+.++++++..||+.+
T Consensus       256 ~~~q~lr~~~~~LPp~n~slL~yli~flA~v~~~~~vNKMs~~NlAiV~gPNl~~~~~p~~~l~~avqvs~~~~~lie~~  335 (577)
T KOG4270|consen  256 EKVQLLRQCLQKLPPTNYSLLRYLIRFLADVVEKEHVNKMSARNLAIVFGPNLLWMKDPLTALMYAVQVSNFLKGLIEKT  335 (577)
T ss_pred             HHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHhhhcccchhhceeEecCCccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            4    455666999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccccCCCCCC
Q 011672          293 LREREETASGGSSP  306 (480)
Q Consensus       293 ~~if~e~~~~~~sp  306 (480)
                      ++.++....+....
T Consensus       336 l~~~~~~~~g~~~~  349 (577)
T KOG4270|consen  336 LEERDTSFPGELEF  349 (577)
T ss_pred             HHhhhccCCccccc
Confidence            99998776655443

>cd04390 RhoGAP_ARHGAP22_24_25 RhoGAP_ARHGAP22_24_25: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP22, 24 and 25-like proteins; longer isoforms of these proteins contain an additional N-terminal pleckstrin homology (PH) domain Back     alignment and domain information
>cd04383 RhoGAP_srGAP RhoGAP_srGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in srGAPs Back     alignment and domain information
>cd04372 RhoGAP_chimaerin RhoGAP_chimaerin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of chimaerins Back     alignment and domain information
>cd04407 RhoGAP_myosin_IXB RhoGAP_myosin_IXB: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXB Back     alignment and domain information
>cd04386 RhoGAP_nadrin RhoGAP_nadrin: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Nadrin-like proteins Back     alignment and domain information
>cd04391 RhoGAP_ARHGAP18 RhoGAP_ARHGAP18: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP18-like proteins Back     alignment and domain information
>cd04389 RhoGAP_KIAA1688 RhoGAP_KIAA1688: GTPase-activator protein (GAP) domain for Rho-like GTPases found in KIAA1688-like proteins; KIAA1688 is a protein of unknown function that contains a RhoGAP domain and a myosin tail homology 4 (MyTH4) domain Back     alignment and domain information
>cd04375 RhoGAP_DLC1 RhoGAP_DLC1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of DLC1-like proteins Back     alignment and domain information
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3) Back     alignment and domain information
>cd04402 RhoGAP_ARHGAP20 RhoGAP_ARHGAP20: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP20-like proteins Back     alignment and domain information
>cd04408 RhoGAP_GMIP RhoGAP_GMIP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) Back     alignment and domain information
>cd04384 RhoGAP_CdGAP RhoGAP_CdGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of CdGAP-like proteins; CdGAP contains an N-terminal RhoGAP domain and a C-terminal proline-rich region, and it is active on both Cdc42 and Rac1 but not RhoA Back     alignment and domain information
>cd04394 RhoGAP-ARHGAP11A RhoGAP-ARHGAP11A: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP11A-like proteins Back     alignment and domain information
>cd04403 RhoGAP_ARHGAP27_15_12_9 RhoGAP_ARHGAP27_15_12_9: GTPase-activator protein (GAP) domain for Rho-like GTPases found in ARHGAP27 (also called CAMGAP1), ARHGAP15, 12 and 9-like proteins; This subgroup of ARHGAPs are multidomain proteins that contain RhoGAP, PH, SH3 and WW domains Back     alignment and domain information
>cd04381 RhoGap_RalBP1 RhoGap_RalBP1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in RalBP1 proteins, also known as RLIP, RLIP76 or cytocentrin Back     alignment and domain information
>cd04396 RhoGAP_fSAC7_BAG7 RhoGAP_fSAC7_BAG7: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal SAC7 and BAG7-like proteins Back     alignment and domain information
>cd04378 RhoGAP_GMIP_PARG1 RhoGAP_GMIP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of GMIP (Gem interacting protein) and PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>cd04406 RhoGAP_myosin_IXA RhoGAP_myosin_IXA: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in myosins IXA Back     alignment and domain information
>cd04393 RhoGAP_FAM13A1a RhoGAP_FAM13A1a: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of FAM13A1, isoform a-like proteins Back     alignment and domain information
>cd04409 RhoGAP_PARG1 RhoGAP_PARG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of PARG1 (PTPL1-associated RhoGAP1) Back     alignment and domain information
>cd04397 RhoGAP_fLRG1 RhoGAP_fLRG1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal LRG1-like proteins Back     alignment and domain information
>cd04373 RhoGAP_p190 RhoGAP_p190: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p190-like proteins Back     alignment and domain information
>cd04395 RhoGAP_ARHGAP21 RhoGAP_ARHGAP21: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP21-like proteins Back     alignment and domain information
>cd04398 RhoGAP_fRGD1 RhoGAP_fRGD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD1-like proteins Back     alignment and domain information
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins Back     alignment and domain information
>cd04387 RhoGAP_Bcr RhoGAP_Bcr: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of Bcr (breakpoint cluster region protein)-like proteins Back     alignment and domain information
>cd04377 RhoGAP_myosin_IX RhoGAP_myosin_IX: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in class IX myosins Back     alignment and domain information
>cd04400 RhoGAP_fBEM3 RhoGAP_fBEM3: RhoGAP (GTPase-activator [GAP] protein for Rho-like small GTPases) domain of fungal BEM3-like proteins Back     alignment and domain information
>cd04376 RhoGAP_ARHGAP6 RhoGAP_ARHGAP6: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP6-like proteins Back     alignment and domain information
>cd04392 RhoGAP_ARHGAP19 RhoGAP_ARHGAP19: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of ArhGAP19-like proteins Back     alignment and domain information
>cd04385 RhoGAP_ARAP RhoGAP_ARAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in ARAPs Back     alignment and domain information
>cd04382 RhoGAP_MgcRacGAP RhoGAP_MgcRacGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in MgcRacGAP proteins Back     alignment and domain information
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase) Back     alignment and domain information
>cd04399 RhoGAP_fRGD2 RhoGAP_fRGD2: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal RGD2-like proteins Back     alignment and domain information
>cd04374 RhoGAP_Graf RhoGAP_Graf: GTPase-activator protein (GAP) domain for Rho-like GTPases found in GRAF (GTPase regulator associated with focal adhesion kinase); Graf is a multi-domain protein, containing SH3 and PH domains, that binds focal adhesion kinase and influences cytoskeletal changes mediated by Rho proteins Back     alignment and domain information
>KOG2200 consensus Tumour suppressor protein p122-RhoGAP/DLC1 [Signal transduction mechanisms] Back     alignment and domain information
>cd04380 RhoGAP_OCRL1 RhoGAP_OCRL1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in OCRL1-like proteins Back     alignment and domain information
>KOG4407 consensus Predicted Rho GTPase-activating protein [General function prediction only] Back     alignment and domain information
>smart00324 RhoGAP GTPase-activator protein for Rho-like GTPases Back     alignment and domain information
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms] Back     alignment and domain information
>cd00159 RhoGAP RhoGAP: GTPase-activator protein (GAP) for Rho-like GTPases; GAPs towards Rho/Rac/Cdc42-like small GTPases Back     alignment and domain information
>KOG1450 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>PF00620 RhoGAP: RhoGAP domain; InterPro: IPR000198 Members of the Rho family of small G proteins transduce signals from plasma-membrane receptors and control cell adhesion, motility and shape by actin cytoskeleton formation Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1451 consensus Oligophrenin-1 and related Rho GTPase-activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2710 consensus Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1117 consensus Rho- and Arf-GTPase activating protein ARAP3 [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3564 consensus GTPase-activating protein [General function prediction only] Back     alignment and domain information
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>cd04401 RhoGAP_fMSB1 RhoGAP_fMSB1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of fungal MSB1-like proteins Back     alignment and domain information
>cd04405 RhoGAP_BRCC3-like RhoGAP_BRCC3-like: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of BRCC3-like proteins Back     alignment and domain information
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms] Back     alignment and domain information
>KOG3565 consensus Cdc42-interacting protein CIP4 [Cytoskeleton] Back     alignment and domain information
>PF08101 DUF1708: Domain of unknown function (DUF1708); InterPro: IPR012965 This is a fungal domain of unknown function, though the yeast protein MSB1(P21339 from SWISSPROT) which contains this domain is thought to play a role in bud formation [] Back     alignment and domain information
>KOG4724 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1453 consensus Chimaerin and related Rho GTPase activating proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG4271 consensus Rho-GTPase activating protein [Signal transduction mechanisms] Back     alignment and domain information
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms] Back     alignment and domain information
>smart00285 PBD P21-Rho-binding domain Back     alignment and domain information
>KOG1449 consensus Predicted Rho GTPase-activating protein CdGAPr [Signal transduction mechanisms] Back     alignment and domain information
>cd00132 CRIB PAK (p21 activated kinase) Binding Domain (PBD), binds Cdc42p- and/or Rho-like small GTPases; also known as the Cdc42/Rac interactive binding (CRIB) motif; has been shown to inhibit transcriptional activation and cell transformation mediated by the Ras-Rac pathway Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
3eap_A271 Crystal Structure Of The Rhogap Domain Of Arhgap11a 6e-08
1ow3_A242 Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With 9e-08
1grn_B203 Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX 1e-07
1tx4_A198 RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198 1e-07
1am4_A199 Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. S 1e-07
1xa6_A466 Crystal Structure Of The Human Beta2-Chimaerin Leng 5e-07
2ngr_B234 Transition State Complex For Gtp Hydrolysis By Cdc4 7e-07
3iug_A229 Crystal Structure Of The Rhogap Domain Of Rics Leng 8e-07
2ee5_A219 Solution Structure Of The N-Teruminus Extended Rhog 2e-06
2ee4_A209 Solution Structure Of The Rhogap Domain From Human 3e-06
2osa_A202 The Rho-Gap Domain Of Human N-Chimaerin Length = 20 1e-05
3cxl_A463 Crystal Structure Of Human Chimerin 1 (Chn1) Length 1e-05
3byi_A214 Crystal Structure Of Human Rho Gtpase Activating Pr 1e-04
3fk2_A246 Crystal Structure Of The Rhogap Domain Of Human Glu 1e-04
3msx_B201 Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With 9e-04
>pdb|3EAP|A Chain A, Crystal Structure Of The Rhogap Domain Of Arhgap11a Length = 271 Back     alignment and structure 
Iteration: 1

 Score = 55.5 bits (132), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 43/171 (25%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 111 ASVFGVSAESMQCSFDSKGNSVPTILL----LMQERLYSQGGLKAEG-IFRINPENSQEE 165
             +FGV   ++  S   +   +P+ L+     +++ ++++G  +  G + R+    ++ +
Sbjct: 62  GKIFGVPFNALPHSAVPEYGHIPSFLVDACTSLEDHIHTEGLFRKSGSVIRLKALKNKVD 121
Query: 166 HVRDQLNRGIVPDNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVL---QCNTEEE---SV 219
           H    L+     D      +AGL+K +FRELP+ +L     E +L   Q  TEE+   ++
Sbjct: 122 HGEGCLSSAPPCD------IAGLLKQFFRELPEPILPADLHEALLKAQQLGTEEKNKATL 175
Query: 220 ELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSD 270
            L   L      +L +  + + +V      NKM++ N+A++FAPN+ Q S+
Sbjct: 176 LLSCLLADHTVHVLRYFFNFLRNVSLRSSENKMDSSNLAVIFAPNLLQTSE 226
>pdb|1OW3|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 242 Back     alignment and structure
>pdb|1GRN|B Chain B, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX Length = 203 Back     alignment and structure
>pdb|1TX4|A Chain A, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 198 Back     alignment and structure
>pdb|1AM4|A Chain A, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens) Length = 199 Back     alignment and structure
>pdb|1XA6|A Chain A, Crystal Structure Of The Human Beta2-Chimaerin Length = 466 Back     alignment and structure
>pdb|2NGR|B Chain B, Transition State Complex For Gtp Hydrolysis By Cdc42: Comparisons Of The High Resolution Structures For Cdc42 Bound To The Active And Catalytically Compromised Forms Of The Cdc42-gap Length = 234 Back     alignment and structure
>pdb|3IUG|A Chain A, Crystal Structure Of The Rhogap Domain Of Rics Length = 229 Back     alignment and structure
>pdb|2EE5|A Chain A, Solution Structure Of The N-Teruminus Extended Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 219 Back     alignment and structure
>pdb|2EE4|A Chain A, Solution Structure Of The Rhogap Domain From Human Rho Gtpase Activating Protein 5 Variant Length = 209 Back     alignment and structure
>pdb|2OSA|A Chain A, The Rho-Gap Domain Of Human N-Chimaerin Length = 202 Back     alignment and structure
>pdb|3CXL|A Chain A, Crystal Structure Of Human Chimerin 1 (Chn1) Length = 463 Back     alignment and structure
>pdb|3BYI|A Chain A, Crystal Structure Of Human Rho Gtpase Activating Protein 15 (arhgap15) Length = 214 Back     alignment and structure
>pdb|3FK2|A Chain A, Crystal Structure Of The Rhogap Domain Of Human Glucocorticoid Receptor Dna-Binding Factor 1 Length = 246 Back     alignment and structure
>pdb|3MSX|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 201 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query480
1ow3_A242 RHO-GTPase-activating protein 1; complex, GTPase, 2e-31
1tx4_A198 P50-rhogap; complex (GTPase activation/proto-oncog 8e-31
3msx_B201 RHO GTPase-activating protein 20; protein-proten c 7e-28
3kuq_A228 RHO GTPase-activating protein 7; structural genomi 2e-24
3fk2_A246 Glucocorticoid receptor DNA-binding factor 1; stru 3e-24
3eap_A271 RHO GTPase-activating protein 11A; GAP, structural 6e-24
2ee4_A209 RHO GTPase activating protein 5 variant; all alpha 2e-23
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 4e-23
1f7c_A231 Rhogap protein; GTPase activating protein, RHO GTP 1e-22
2osa_A202 N-chimaerin; RHO-GAP, GTPase activation, structura 1e-22
3byi_A214 RHO GTPase activating protein 15; BM046, arhgap15, 2e-21
2ovj_A201 Mgcracgap, RAC GTPase-activating protein 1; signal 2e-21
3cxl_A463 N-chimerin; SH2, RHO-GAP, structural genomics cons 4e-21
1pbw_A216 Rhogap domain, phosphatidylinositol 3-kinase; phos 2e-20
3iug_A229 RHO/CDC42/RAC GTPase-activating protein RICS; stru 5e-20
2xs6_A214 Phosphatidylinositol 3-kinase regulatory subunit; 3e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-09
2qme_I36 CRIB domain of the serine/threonine-protein kinas; 1e-06
2odb_B35 Serine/threonine-protein kinase PAK 6; small GTPas 4e-06
2ov2_I35 Serine/threonine-protein kinase PAK 4; GTPase RAC3 2e-05
1f3m_A80 Serine/threonine-protein kinase PAK-alpha; kinase 9e-05
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Length = 242 Back     alignment and structure
 Score =  120 bits (302), Expect = 2e-31
 Identities = 44/192 (22%), Positives = 77/192 (40%), Gaps = 11/192 (5%)

Query: 107 PSASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEH 166
           P      FGVS +      + +   +P +L      L +   L  EGIFR +        
Sbjct: 38  PPLPNQQFGVSLQH-LQEKNPEQEPIPIVLRETVAYLQAHA-LTTEGIFRRSANTQVVRE 95

Query: 167 VRDQLNRGIVPD---NIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNTEEESV---- 219
           V+ + N G+  D     ++H  A ++K + RELP+ +L       V+     +ES     
Sbjct: 96  VQQKYNMGLPVDFDQYNELHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPA 155

Query: 220 --ELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTALMH 277
             ++++ L      +L +    +  +    + NKM   N+A+VF PN+    D    L  
Sbjct: 156 TLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKA 215

Query: 278 AVQVMNLLKTLI 289
              +    K L+
Sbjct: 216 INPINTFTKFLL 227
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Length = 198 Back     alignment and structure
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Length = 201 Back     alignment and structure
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Length = 228 Back     alignment and structure
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Length = 246 Back     alignment and structure
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Length = 271 Back     alignment and structure
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Length = 209 Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Length = 366 Back     alignment and structure
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Length = 231 Back     alignment and structure
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Length = 202 Back     alignment and structure
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Length = 214 Back     alignment and structure
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Length = 201 Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Length = 463 Back     alignment and structure
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Length = 216 Back     alignment and structure
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Length = 229 Back     alignment and structure
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Length = 214 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens} Length = 36 Back     alignment and structure
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens} Length = 35 Back     alignment and structure
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens} Length = 35 Back     alignment and structure
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B Length = 80 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
1tx4_A198 P50-rhogap; complex (GTPase activation/proto-oncog 100.0
1ow3_A242 RHO-GTPase-activating protein 1; complex, GTPase, 100.0
3msx_B201 RHO GTPase-activating protein 20; protein-proten c 100.0
2ee4_A209 RHO GTPase activating protein 5 variant; all alpha 100.0
3fk2_A246 Glucocorticoid receptor DNA-binding factor 1; stru 100.0
3byi_A214 RHO GTPase activating protein 15; BM046, arhgap15, 100.0
2osa_A202 N-chimaerin; RHO-GAP, GTPase activation, structura 100.0
3iug_A229 RHO/CDC42/RAC GTPase-activating protein RICS; stru 100.0
1pbw_A216 Rhogap domain, phosphatidylinositol 3-kinase; phos 100.0
3eap_A271 RHO GTPase-activating protein 11A; GAP, structural 100.0
3kuq_A228 RHO GTPase-activating protein 7; structural genomi 100.0
1f7c_A231 Rhogap protein; GTPase activating protein, RHO GTP 100.0
2ovj_A201 Mgcracgap, RAC GTPase-activating protein 1; signal 100.0
2xs6_A214 Phosphatidylinositol 3-kinase regulatory subunit; 100.0
3cxl_A463 N-chimerin; SH2, RHO-GAP, structural genomics cons 100.0
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 100.0
2odb_B35 Serine/threonine-protein kinase PAK 6; small GTPas 91.76
2qme_I36 CRIB domain of the serine/threonine-protein kinas; 91.07
2ov2_I35 Serine/threonine-protein kinase PAK 4; GTPase RAC3 83.48
1f3m_A80 Serine/threonine-protein kinase PAK-alpha; kinase 83.09
>1tx4_A P50-rhogap; complex (GTPase activation/proto-oncogene), GTPase, transition state, GAP; HET: GDP; 1.65A {Homo sapiens} SCOP: a.116.1.1 PDB: 1am4_A* 1grn_B* Back     alignment and structure
Probab=100.00  E-value=1.5e-41  Score=322.20  Aligned_cols=187  Identities=22%  Similarity=0.323  Sum_probs=168.0

Q ss_pred             CCCCCccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCCCC---CCCHHH
Q 011672          108 SASASVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIVPD---NIDVHC  184 (480)
Q Consensus       108 ~~~~~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~~~---~~Dvh~  184 (480)
                      ..+.++||++|+.++ ........||.+|.+|++|| +++|+++|||||++|+..+|++|++.||+|...+   ..|+|+
T Consensus         3 ~~~~~vFG~~L~~~~-~~~~~~~~vP~iv~~~i~~l-~~~gl~~eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~d~~~   80 (198)
T 1tx4_A            3 PLPNQQFGVSLQHLQ-EKNPEQEPIPIVLRETVAYL-QAHALTTEGIFRRSANTQVVREVQQKYNMGLPVDFDQYNALHL   80 (198)
T ss_dssp             CCTTCCTTSCHHHHH-HHSTTCCSSCHHHHHHHHHH-HHHCTTCTTTTTSCCCHHHHHHHHHHHHTTCCCCGGGSSCTHH
T ss_pred             CCCCCccCCcHHHHH-hhCCCCCCCCHHHHHHHHHH-HHhCCCCCCeeecCCcHHHHHHHHHHHhCCCCCCccccccchH
Confidence            345789999999985 33333358999999999998 6899999999999999999999999999997543   358999


Q ss_pred             HHHHHHHHHHhCCCCCCCCCCHHHHHhhc------cHHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhH
Q 011672          185 LAGLIKAWFRELPQGVLDGLSPEQVLQCN------TEEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIA  258 (480)
Q Consensus       185 vAsLLK~fLReLPePLl~~~ly~~~i~~~------~~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLA  258 (480)
                      +|++||.|||+||+||+|.++|+.|+++.      +.+.++.++.+||+.|+.+|+||+.||++|++|++.|||++.|||
T Consensus        81 ~a~lLK~flreLpePLi~~~l~~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L~~v~~~~~~NkM~~~nLa  160 (198)
T 1tx4_A           81 PAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVLQTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLA  160 (198)
T ss_dssp             HHHHHHHHHHHSSSCTTCGGGHHHHHTGGGSCGGGHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHTHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHHCCCcCCCHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHH
Confidence            99999999999999999999999999873      356788999999999999999999999999999999999999999


Q ss_pred             HhhhcccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 011672          259 MVFAPNMTQMSDPLTALMHAVQVMNLLKTLIMKTLRER  296 (480)
Q Consensus       259 iVFaPnLlr~~d~~~~l~~~~~v~~~v~~LI~n~~~if  296 (480)
                      +||||+|+|+++....+......+.+++.||+|+..+|
T Consensus       161 ~vf~P~Ll~~~~~~~~~~~~~~~~~~v~~LI~~~~~iF  198 (198)
T 1tx4_A          161 VVFGPNLLWAKDAAITLKAINPINTFTKFLLDHQGELF  198 (198)
T ss_dssp             HHHHHHHCCCSSHHHHHHTHHHHHHHHHHHHHTHHHHC
T ss_pred             hhhcccccCCCCccccHHHHHHHHHHHHHHHHhHHHhC
Confidence            99999999999877777777888899999999998886
>1ow3_A RHO-GTPase-activating protein 1; complex, GTPase, GAP, transition state, gene regulation/signaling protein complex; HET: GDP; 1.80A {Homo sapiens} SCOP: a.116.1.1 PDB: 1rgp_A 2ngr_B* Back     alignment and structure
>3msx_B RHO GTPase-activating protein 20; protein-proten complex, transition state, protein BI; HET: GDP; 1.65A {Homo sapiens} Back     alignment and structure
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A Back     alignment and structure
>3fk2_A Glucocorticoid receptor DNA-binding factor 1; structural genomics consortium, GTPase-activating protein, SGC, alternative splicing, anti-oncogene; 2.80A {Homo sapiens} Back     alignment and structure
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens} Back     alignment and structure
>2osa_A N-chimaerin; RHO-GAP, GTPase activation, structural genomics, structural genomics consortium, SGC, signaling protein; 1.80A {Homo sapiens} Back     alignment and structure
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens} Back     alignment and structure
>1pbw_A Rhogap domain, phosphatidylinositol 3-kinase; phosphotransferase, tpase activating protein, CDC42, phosphoinositide 3-kinase, SH3 domain; 2.00A {Homo sapiens} SCOP: a.116.1.1 Back     alignment and structure
>3eap_A RHO GTPase-activating protein 11A; GAP, structural genomics consortium, GTPase activation, phosphoprotein, polymorphism hydrolase activator, SGC; 2.30A {Homo sapiens} Back     alignment and structure
>3kuq_A RHO GTPase-activating protein 7; structural genomics consortium, GTPase activation, SGC, alternative splicing, cytoplasm, phosphoprotein; 2.30A {Homo sapiens} Back     alignment and structure
>1f7c_A Rhogap protein; GTPase activating protein, RHO GTPase regulator, BH domain, signaling protein; 2.40A {Gallus gallus} SCOP: a.116.1.1 Back     alignment and structure
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens} Back     alignment and structure
>2xs6_A Phosphatidylinositol 3-kinase regulatory subunit; structural genomics consortium, SGC, transferase; 2.09A {Homo sapiens} Back     alignment and structure
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2odb_B Serine/threonine-protein kinase PAK 6; small GTPase, CRIB, protein-protein complex, structu genomics, structural genomics consortium, SGC; HET: GCP; 2.40A {Homo sapiens} Back     alignment and structure
>2qme_I CRIB domain of the serine/threonine-protein kinas; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3; HET: GCP; 1.75A {Homo sapiens} Back     alignment and structure
>2ov2_I Serine/threonine-protein kinase PAK 4; GTPase RAC3, small GTP binding protein, P21 RAC, RAS-related botulinum toxin substrate 3, signalling protein; HET: GCP; 2.10A {Homo sapiens} Back     alignment and structure
>1f3m_A Serine/threonine-protein kinase PAK-alpha; kinase domain, autoinhibitory fragment, homodimer, transferase; 2.30A {Homo sapiens} SCOP: j.66.1.1 PDB: 1e0a_B* 1ees_B Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 480
d1tx4a_196 a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapi 3e-29
d1xa6a1196 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal d 5e-26
d1pbwa_184 a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Hu 3e-22
d1f7ca_191 a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxI 6e-19
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Back     information, alignment and structure

class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: p50 RhoGAP domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (278), Expect = 3e-29
 Identities = 42/187 (22%), Positives = 75/187 (40%), Gaps = 11/187 (5%)

Query: 112 SVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQL 171
             FGVS + +    + +   +P +L      L     L  EGIFR +        V+ + 
Sbjct: 5   QQFGVSLQHL-QEKNPEQEPIPIVLRETVAYLQ-AHALTTEGIFRRSANTQVVREVQQKY 62

Query: 172 NRGIVP---DNIDVHCLAGLIKAWFRELPQGVLDGLSPEQVLQCNTEEES------VELV 222
           N G+         +H  A ++K + RELP+ +L       V+     +ES      ++++
Sbjct: 63  NMGLPVDFDQYNALHLPAVILKTFLRELPEPLLTFDLYPHVVGFLNIDESQRVPATLQVL 122

Query: 223 KQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIAMVFAPNMTQMSDPLTALMHAVQVM 282
           + L      +L +    +  +    + NKM   N+A+VF PN+    D    L     + 
Sbjct: 123 QTLPEENYQVLRFLTAFLVQISAHSDQNKMTNTNLAVVFGPNLLWAKDAAITLKAINPIN 182

Query: 283 NLLKTLI 289
              K L+
Sbjct: 183 TFTKFLL 189
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 196 Back     information, alignment and structure
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Length = 184 Back     information, alignment and structure
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Length = 191 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query480
d1xa6a1196 Beta-chimaerin, C-terminal domain {Human (Homo sap 100.0
d1tx4a_196 p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 96 100.0
d1f7ca_191 Graf {Chicken (Gallus gallus) [TaxId: 9031]} 100.0
d1pbwa_184 p85 alpha subunit RhoGAP domain {Human (Homo sapie 100.0
>d1xa6a1 a.116.1.1 (A:271-466) Beta-chimaerin, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: GTPase activation domain, GAP
superfamily: GTPase activation domain, GAP
family: BCR-homology GTPase activation domain (BH-domain)
domain: Beta-chimaerin, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.6e-39  Score=303.90  Aligned_cols=181  Identities=22%  Similarity=0.321  Sum_probs=159.8

Q ss_pred             CccccchhhhhhccCCCCCCCcHHHHHHHHHHHHcCCCCCCCccccCCCchHHHHHHHHHhcCCC-C-----CCCCHHHH
Q 011672          112 SVFGVSAESMQCSFDSKGNSVPTILLLMQERLYSQGGLKAEGIFRINPENSQEEHVRDQLNRGIV-P-----DNIDVHCL  185 (480)
Q Consensus       112 ~vFGvpLe~L~~~~d~~g~~VP~il~~~i~~Lie~~Gl~~EGIFRisG~~~~I~~Lr~~ld~g~~-~-----~~~Dvh~v  185 (480)
                      ++||+||+.+...   .+..||.+|.+|++|| +++|+++|||||++|+..++++|++.||++.. .     ...|+|++
T Consensus         1 kiFg~~L~~~~~~---~~~~iP~iv~~~i~~l-~~~gl~~eGiFR~~g~~~~v~~l~~~~~~~~~~~~~~~~~~~d~~~v   76 (196)
T d1xa6a1           1 KVYCCDLTTLVKA---HNTQRPMVVDICIREI-EARGLKSEGLYRVSGFTEHIEDVKMAFDRDGEKADISANVYPDINII   76 (196)
T ss_dssp             CCTTSCHHHHHHH---HTCSSCHHHHHHHHHH-HHSCSSSTTTTTSCCCHHHHHHHHHHHSSTTTTSCCCSSSSCCTHHH
T ss_pred             CccCCCHHHHHHh---cCCCCChHHHHHHHHH-HHhCCCCCCeeeeCCCHHHHHHHHHHHhcCCCccccccccccchhHH
Confidence            4899999998532   3567999999999998 68999999999999999999999999998532 1     23589999


Q ss_pred             HHHHHHHHHhCCCCCCCCCCHHHHHhhcc-------HHHHHHHHHhcCHHHHHHHHHHHhhhhHhhhcccccCCChhhhH
Q 011672          186 AGLIKAWFRELPQGVLDGLSPEQVLQCNT-------EEESVELVKQLKPTEAALLNWAVDLMADVVEEEESNKMNARNIA  258 (480)
Q Consensus       186 AsLLK~fLReLPePLl~~~ly~~~i~~~~-------~e~~~~Ll~~LP~~n~~lL~~Li~fL~~V~~~s~~NKMta~NLA  258 (480)
                      |++||+|||+||+||+|.++|+.++.+.+       .+.++.++.+||+.|+.+|.||+.||++|++|++.||||+.|||
T Consensus        77 a~~lK~fLr~Lp~pli~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~LP~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLA  156 (196)
T d1xa6a1          77 TGALKLYFRDLPIPVITYDTYSKFIDAAKISNADERLEAVHEVLMLLPPAHYETLRYLMIHLKKVTMNEKDNFMNAENLG  156 (196)
T ss_dssp             HHHHHHHHHHCSSCTTCSTTHHHHHTTTTCCCHHHHHHHHHHHHTTSCHHHHHHHHHTTTTTHHHHTTTTTSCCCHHHHH
T ss_pred             HHHHHHHHHhCCCccCCHHHHHHHHHHHhccchhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhhhhccchhhhh
Confidence            99999999999999999999999998733       45678899999999999999999999999999999999999999


Q ss_pred             HhhhcccCCCCCh--hHHHHHHHHHHHHHHHHHHHHHHhh
Q 011672          259 MVFAPNMTQMSDP--LTALMHAVQVMNLLKTLIMKTLRER  296 (480)
Q Consensus       259 iVFaPnLlr~~d~--~~~l~~~~~v~~~v~~LI~n~~~if  296 (480)
                      +||||+|+++++.  ...+........+++.||+|+..+|
T Consensus       157 ~~f~P~l~~~~~~~~~~~~~~~~~~~~iv~~LI~~~~~iF  196 (196)
T d1xa6a1         157 IVFGPTLMRPPEDSTLTTLHDMRYQKLIVQILIENEDVLF  196 (196)
T ss_dssp             HHHTTTSCCCCCSCTTGGGGTHHHHHHHHHHHHHTHHHHC
T ss_pred             HHhccccccCCCccHHHHHHHHHHHHHHHHHHHHhhHhhC
Confidence            9999999998643  4455667777889999999998876
>d1tx4a_ a.116.1.1 (A:) p50 RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f7ca_ a.116.1.1 (A:) Graf {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1pbwa_ a.116.1.1 (A:) p85 alpha subunit RhoGAP domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure