Citrus Sinensis ID: 011692
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | 2.2.26 [Sep-21-2011] | |||||||
| Q9USQ4 | 396 | NASP-related protein sim3 | yes | no | 0.505 | 0.611 | 0.249 | 3e-08 | |
| P06180 | 590 | Histone-binding protein N | N/A | no | 0.465 | 0.377 | 0.242 | 1e-07 | |
| Q66HD3 | 776 | Nuclear autoantigenic spe | yes | no | 0.242 | 0.149 | 0.282 | 2e-07 | |
| P49321 | 788 | Nuclear autoantigenic spe | no | no | 0.308 | 0.187 | 0.256 | 2e-07 | |
| Q2T9P4 | 777 | Nuclear autoantigenic spe | yes | no | 0.235 | 0.145 | 0.301 | 1e-06 | |
| P27123 | 693 | Nuclear autoantigenic spe | yes | no | 0.265 | 0.183 | 0.283 | 2e-06 | |
| Q99MD9 | 773 | Nuclear autoantigenic spe | no | no | 0.242 | 0.150 | 0.275 | 2e-06 | |
| Q02508 | 510 | Protein HGV2 OS=Halocynth | N/A | no | 0.235 | 0.221 | 0.273 | 1e-05 |
| >sp|Q9USQ4|SIM3_SCHPO NASP-related protein sim3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sim3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 60.5 bits (145), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 66/265 (24%), Positives = 123/265 (46%), Gaps = 23/265 (8%)
Query: 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEA 126
++L+ +G A + +Y EA + + +AL S +G +LE N + YG++L A E +
Sbjct: 33 EQLVTQGNMAYAQKNYEEAVDKYGQALMQSESIHGSESLENRNVLWLYGKSLFQIAIENS 92
Query: 127 DPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQ-HGSSNNQDEAADDAVPG 185
L G++ + + + S + S ++ +E + A P
Sbjct: 93 QVL-------GNALGAKESVSQATESFEEPEAIGSFTFSGQKIENKYTVNEENSSIAHPE 145
Query: 186 DNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK---HWGDSM-EKV---DILS 238
E++E N+ +E DED D ++AW++LD+ R + K + DS EK+ DI
Sbjct: 146 KESEEKETNEASPASEEDED--DFNVAWEVLDLTRVMQSKAVDAYPDSKDEKIRLADIYD 203
Query: 239 ALAEVALEREDIETSLSDYQKALTILERMVE-PDSRHIAELNFRICLCLEIG-----SKP 292
L E++LE E+ + D + AL E++ ++ ++E ++++ L LE S
Sbjct: 204 LLGELSLEIENFSQASQDLKTALEWKEKVYNVSNNTLLSEAHYKLALALEFTNPEDPSNK 263
Query: 293 QEAIPYCQKAISVCKSRVQRLLNEV 317
A + +KA + K+ + NEV
Sbjct: 264 SRACEHVEKAAEILKNVLNERENEV 288
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Histone H3 and H3-like CENP-A-specific chaperone. Promotes delivery and incorporation of CENP-A in centromeric chromatin, probably by escorting nascent CENP-A to CENP-A chromatin assembly factors. Required for central core silencing and normal chromosome segregation. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|P06180|HIBN_XENLA Histone-binding protein N1/N2 OS=Xenopus laevis PE=1 SV=3 | Back alignment and function description |
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Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 124/272 (45%), Gaps = 49/272 (18%)
Query: 205 DESDLDLAWKMLDVARAIAEKHWGD--SMEKVDILSALAEVALEREDIETSLSDYQKALT 262
D +L LAW+MLD+ + I ++ ++ L EV +E E+ ++ D+ L
Sbjct: 326 DVGNLQLAWEMLDLCKTIFKRQQSKEAQLKAAQAHQKLGEVCIESENYSQAVEDFLACLN 385
Query: 263 ILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVK-SLG 321
I + +E R +AE ++ + L + SK +EAI + ++I V + R+ L +++ S+G
Sbjct: 386 IQKEHLEEHDRLLAETHYHLGLAYQYSSKHEEAISHFTQSIGVIEKRMDVLTKQLEASVG 445
Query: 322 ESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLED---LQQVAL 378
E L+ + + E++ L L D+++K+ED Q+ A
Sbjct: 446 E-------------------------LVDEVKKEMDELKDLLPDIKEKIEDSKEAQKNAT 480
Query: 379 FPKSILSEIL-GMASAKAKGDEKSSTSAVLSSSRMGTANSDGDFDSPTVSTAHTSGAAGV 437
+ L E L G +S +K + +S+S+ + S GD P T+ + +
Sbjct: 481 VTEKALKETLVGGSSGFSKENGSTSSSSAVEKS--------GDSTVPV-----TNCVSDI 527
Query: 438 THLGVVGRGVKRVSMSTGSAESRPSKKSTSDP 469
+HL V + KR + + + +KKS +P
Sbjct: 528 SHL--VRK--KRKTEEESPLKDKDAKKSKQEP 555
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This protein is involved in nucleosome assembly. It is bound to H3 and H4 in the absence of DNA, but released from H3 and H4 in the presence of DNA. Xenopus laevis (taxid: 8355) |
| >sp|Q66HD3|NASP_RAT Nuclear autoantigenic sperm protein OS=Rattus norvegicus GN=Nasp PE=2 SV=1 | Back alignment and function description |
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Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 73/138 (52%), Gaps = 22/138 (15%)
Query: 186 DNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSA-----L 240
+NEE+E GN L+LAW MLD+A+ I ++ ++ + +A L
Sbjct: 494 ENEEEEIGN--------------LELAWDMLDLAKIIFKRQ---ETKEAQLYAAQAHLKL 536
Query: 241 AEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300
EV++E E+ ++ ++Q L++ E+ +E R +AE ++++ L S+ EA+
Sbjct: 537 GEVSVESENYIQAVEEFQACLSLQEQYLEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFG 596
Query: 301 KAISVCKSRVQRLLNEVK 318
K+I V + R+ LL ++K
Sbjct: 597 KSIDVIEKRMAVLLEQMK 614
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Required for DNA replication, normal cell cycle progression and cell proliferation. Forms a cytoplasmic complex with HSP90 and H1 linker histones and stimulates HSP90 ATPase activity. NASP and H1 histone are subsequently released from the complex and translocate to the nucleus where the histone is released for binding to DNA. Rattus norvegicus (taxid: 10116) |
| >sp|P49321|NASP_HUMAN Nuclear autoantigenic sperm protein OS=Homo sapiens GN=NASP PE=1 SV=2 | Back alignment and function description |
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Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 93/195 (47%), Gaps = 47/195 (24%)
Query: 186 DNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSA-----L 240
+NEE+E GN L+LAW MLD+A+ I ++ ++ + +A L
Sbjct: 506 ENEEEEIGN--------------LELAWDMLDLAKIIFKRQ---ETKEAQLYAAQAHLKL 548
Query: 241 AEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300
EV++E E+ ++ ++Q L + E+ +E R +AE ++++ L S+ EA+
Sbjct: 549 GEVSVESENYVQAVEEFQSCLNLQEQYLEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFS 608
Query: 301 KAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLS 360
K+I V ++R+ L +VK + SS+E++ EIE L
Sbjct: 609 KSIEVIENRMAVLNEQVKE----------------AEGSSAEYKK---------EIEELK 643
Query: 361 GLCGDLEKKLEDLQQ 375
L ++ +K+ED ++
Sbjct: 644 ELLPEIREKIEDAKE 658
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Required for DNA replication, normal cell cycle progression and cell proliferation. Forms a cytoplasmic complex with HSP90 and H1 linker histones and stimulates HSP90 ATPase activity. NASP and H1 histone are subsequently released from the complex and translocate to the nucleus where the histone is released for binding to DNA. Homo sapiens (taxid: 9606) |
| >sp|Q2T9P4|NASP_BOVIN Nuclear autoantigenic sperm protein OS=Bos taurus GN=NASP PE=2 SV=2 | Back alignment and function description |
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Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 23/136 (16%)
Query: 186 DNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSA-----L 240
+NEE+E GN L+LAW MLD+A+ I ++ D+ E + +A L
Sbjct: 495 ENEEEEIGN--------------LELAWDMLDLAKIIFKRQ--DTKE-AQLYAAQAHLKL 537
Query: 241 AEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300
EV++E E+ ++ ++Q L + E+ +E R +AE ++++ L S+ EA+
Sbjct: 538 GEVSVESENYLQAVEEFQACLNLQEQYLEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFS 597
Query: 301 KAISVCKSRVQRLLNE 316
K+I V + R+ +LNE
Sbjct: 598 KSIEVIEKRM-AVLNE 612
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Required for DNA replication, normal cell cycle progression and cell proliferation. Forms a cytoplasmic complex with HSP90 and H1 linker histones and stimulates HSP90 ATPase activity. NASP and H1 histone are subsequently released from the complex and translocate to the nucleus where the histone is released for binding to DNA. Bos taurus (taxid: 9913) |
| >sp|P27123|NASP_RABIT Nuclear autoantigenic sperm protein (Fragment) OS=Oryctolagus cuniculus GN=NASP PE=2 SV=2 | Back alignment and function description |
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Score = 54.7 bits (130), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 79/141 (56%), Gaps = 14/141 (9%)
Query: 186 DNEEDEEGND----GENVAEADEDE-SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSA- 239
D E+E ND +++ E +E+E +L+LAW MLD+A+ I ++ ++ + +A
Sbjct: 393 DKAEEETPNDSVLENKSLPENEEEEIGNLELAWDMLDLAKIIFKRQ---ETKEAQLYAAQ 449
Query: 240 ----LAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 295
L EV++E ++ ++ ++Q L++ E+ +E R +AE ++++ L S+ EA
Sbjct: 450 AHLKLGEVSVESQNYIQAVEEFQACLSLQEQYLEAHDRLLAETHYQLGLAYGYNSQYDEA 509
Query: 296 IPYCQKAISVCKSRVQRLLNE 316
+ K+I V + R+ +LNE
Sbjct: 510 VAQFSKSIEVIEKRM-AVLNE 529
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Required for DNA replication, normal cell cycle progression and cell proliferation. Forms a cytoplasmic complex with HSP90 and H1 linker histones and stimulates HSP90 ATPase activity. NASP and H1 histone are subsequently released from the complex and translocate to the nucleus where the histone is released for binding to DNA. Oryctolagus cuniculus (taxid: 9986) |
| >sp|Q99MD9|NASP_MOUSE Nuclear autoantigenic sperm protein OS=Mus musculus GN=Nasp PE=1 SV=2 | Back alignment and function description |
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Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 72/138 (52%), Gaps = 22/138 (15%)
Query: 186 DNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSA-----L 240
+NEE+E GN L+LAW MLD+A+ I ++ ++ + +A L
Sbjct: 492 ENEEEEIGN--------------LELAWDMLDLAKIIFKRQ---ETKEAQLYAAQAHLKL 534
Query: 241 AEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300
EV++E E+ ++ ++Q L++ E+ +E R +AE ++++ L S+ EA+
Sbjct: 535 GEVSVESENYIQAVEEFQACLSLQEQYLEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFG 594
Query: 301 KAISVCKSRVQRLLNEVK 318
K+I V + R+ L ++K
Sbjct: 595 KSIDVIEKRMAVLHEQMK 612
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Required for DNA replication, normal cell cycle progression and cell proliferation. Forms a cytoplasmic complex with HSP90 and linker H1 histones and stimulates HSP90 ATPase activity. NASP and H1 histone are subsequently released from the complex and translocate to the nucleus where the histone is released for binding to DNA. Mus musculus (taxid: 10090) |
| >sp|Q02508|HGV2_HALRO Protein HGV2 OS=Halocynthia roretzi GN=HGV2 PE=2 SV=1 | Back alignment and function description |
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Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 204 EDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSA---LAEVALEREDIETSLSDYQKA 260
+D S++ LAW+ML++A+ + +KH K + L E+ LE E+ ++ D+ +
Sbjct: 227 DDISNMQLAWEMLELAKVLYKKHDKSKTNKQMVAQCHLKLGELGLEVENHPQAIGDFLEC 286
Query: 261 LTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEV 317
L I + ++ R +AE + + L + A+ + Q A+ V ++RV +LNE+
Sbjct: 287 LVIQKDLLPETDRKLAETYYNLGLAYSFEKRYDNALEHYQSALDVLEARVD-MLNEL 342
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May function as a nucleosome assembly factor during rapid embryonic cell divisions. Halocynthia roretzi (taxid: 7729) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | ||||||
| 359495786 | 1123 | PREDICTED: uncharacterized protein LOC10 | 0.974 | 0.415 | 0.677 | 1e-169 | |
| 255562753 | 459 | conserved hypothetical protein [Ricinus | 0.941 | 0.982 | 0.695 | 1e-162 | |
| 224084225 | 470 | predicted protein [Populus trichocarpa] | 0.954 | 0.972 | 0.663 | 1e-152 | |
| 449460622 | 480 | PREDICTED: uncharacterized protein LOC10 | 0.968 | 0.966 | 0.580 | 1e-141 | |
| 449510293 | 480 | PREDICTED: uncharacterized LOC101207851 | 0.968 | 0.966 | 0.578 | 1e-140 | |
| 147791854 | 440 | hypothetical protein VITISV_027632 [Viti | 0.881 | 0.959 | 0.605 | 1e-139 | |
| 297798194 | 498 | tetratricopeptide repeat-containing prot | 0.943 | 0.907 | 0.546 | 1e-131 | |
| 388519625 | 455 | unknown [Medicago truncatula] | 0.830 | 0.874 | 0.606 | 1e-128 | |
| 18419996 | 492 | tetratricopeptide repeat domain-containi | 0.960 | 0.934 | 0.557 | 1e-127 | |
| 298205066 | 340 | unnamed protein product [Vitis vinifera] | 0.701 | 0.988 | 0.705 | 1e-126 |
| >gi|359495786|ref|XP_002272586.2| PREDICTED: uncharacterized protein LOC100248980 [Vitis vinifera] | Back alignment and taxonomy information |
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Score = 602 bits (1551), Expect = e-169, Method: Compositional matrix adjust.
Identities = 321/474 (67%), Positives = 379/474 (79%), Gaps = 7/474 (1%)
Query: 5 EGSQTVAEQTAQPTETVGTTQASVEATMESVTVSGTESTCNNNCETSGAIADGEREKTVE 64
E + T E+ PT V Q+S EAT+ES TES+CNNN +TS +D +REK++E
Sbjct: 649 ENAATKVEEALAPTGQVA--QSSNEATIESNAQGDTESSCNNNADTSARPSDADREKSLE 706
Query: 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124
+A+ELMEKG+ A+KESD+ EA +CFSRALEIRV+H+GELA ECVN YY+YG ALLYKAQE
Sbjct: 707 YAEELMEKGSKAVKESDFSEATDCFSRALEIRVAHHGELAFECVNTYYKYGCALLYKAQE 766
Query: 125 EADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVP 184
EADPL ++P KE +S + S+KD S+KNAVN ESSTASV+ AEQ GSSN+Q AADD
Sbjct: 767 EADPLATMPNKEAESHENSNKDGSMKNAVNDESSTASVN--AEQDGSSNDQKVAADDDTN 824
Query: 185 GDNEEDEEGNDGEN-VAEADEDESDLDLAWKMLDVARAIAEKH-WGDSMEKVDILSALAE 242
G +E+E+ + +AEADEDESDLDLAWKMLDVARAI EKH D+MEKVDILSALAE
Sbjct: 825 GKEQEEEDEESDDEDLAEADEDESDLDLAWKMLDVARAIVEKHSAADTMEKVDILSALAE 884
Query: 243 VALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302
VALEREDIETSLSDYQKAL+ILER+VEPDSRHIAELNFRICLCLEIGSK QEAIPYCQ+A
Sbjct: 885 VALEREDIETSLSDYQKALSILERLVEPDSRHIAELNFRICLCLEIGSKAQEAIPYCQRA 944
Query: 303 ISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGL 362
IS+CKSRVQRL NE+KSL ES S ELD QQSS+ Q ++DKE+EIETL+GL
Sbjct: 945 ISICKSRVQRLSNEIKSLSESPAISPTPELDQSAQQSSNVSQAGNSISDKESEIETLNGL 1004
Query: 363 CGDLEKKLEDLQQVALFPKSILSEILGMASAKAKGDEKSSTSAVLSSSRMGTANSDGDFD 422
+LEKKLEDLQQ+ P SILSEILGM SAKA+G +K ++ +V+ SS++G+ANS G FD
Sbjct: 1005 ASELEKKLEDLQQLVSNPTSILSEILGMMSAKARGADKGASPSVMGSSQIGSANSHGGFD 1064
Query: 423 SPTVSTA-HTSGAAGVTHLGVVGRGVKRVSMSTGSAESRPSKKSTSDPSSDKGD 475
SPTVSTA HT+GAAGVTHLGVVGRGVKRVSM++G+AES P KK D S DKGD
Sbjct: 1065 SPTVSTASHTNGAAGVTHLGVVGRGVKRVSMNSGTAESSPMKKPPLDSSLDKGD 1118
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562753|ref|XP_002522382.1| conserved hypothetical protein [Ricinus communis] gi|223538460|gb|EEF40066.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 320/460 (69%), Positives = 374/460 (81%), Gaps = 9/460 (1%)
Query: 24 TQASVEATMES-VTVSGTESTCNNNCETSGAIADGEREKTVEFADELMEKGTNALKESDY 82
T+ S EAT+ES GTESTCNNN + E ++E A E ++GT AL ++DY
Sbjct: 3 TETSNEATIESNAQGGGTESTCNNNNGEPSTLTSAE---SLELAVEFTQRGTKALNDNDY 59
Query: 83 GEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142
EAA+CFSRALEIRVS+YGELALEC++AYYQYGRALLYKAQEEADPL +VPK++ +S+Q
Sbjct: 60 TEAADCFSRALEIRVSYYGELALECLSAYYQYGRALLYKAQEEADPLATVPKRDAESKQE 119
Query: 143 SDKDDSVKNAVNGESSTAS-VSSSAEQHGS--SNNQDEAADDAV-PGDNEEDEEGNDGEN 198
SD+D SVK+A+ ESSTAS VSS+ E+ G+ S+NQ DDA D EED E +D E+
Sbjct: 120 SDQDGSVKSAMKAESSTASAVSSNTEEDGNLDSSNQQGVTDDASGRKDQEEDGEVSDDED 179
Query: 199 VAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQ 258
+AEADEDESDLDLAWKMLDVARAIAEKH GD+M+KVD+LSALAEVALEREDIETSLSDY+
Sbjct: 180 LAEADEDESDLDLAWKMLDVARAIAEKHSGDTMDKVDVLSALAEVALEREDIETSLSDYE 239
Query: 259 KALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVK 318
KAL ILER+VEPDSRH+AELNFRICLCLEIGSKPQEAIPYCQ+AIS+CKSR+QRL+NEVK
Sbjct: 240 KALLILERLVEPDSRHLAELNFRICLCLEIGSKPQEAIPYCQRAISICKSRLQRLMNEVK 299
Query: 319 SLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQVAL 378
ESA +SA +ELDDG+QQSS+ Q D +TDKEAEIETL+GL GDLEKKLEDLQQ+A+
Sbjct: 300 DSSESAIASAVSELDDGVQQSSNGSQIDVSVTDKEAEIETLTGLSGDLEKKLEDLQQLAV 359
Query: 379 FPKSILSEILGMASAKAKGDEKSSTSAVLSSSRMGTANSDGDFDSPTVSTAHTSGAAGVT 438
PKSILSEILGM SAKAKG EKS++ A + SS++ A S G FDSPTVSTAHT+GAA VT
Sbjct: 360 NPKSILSEILGMVSAKAKGAEKSASPAEVKSSQIAIAGSSGAFDSPTVSTAHTNGAA-VT 418
Query: 439 HLGVVGRGVKRVSMSTGSAESRPSKKSTSDPSSDKGDGSV 478
HLGVVGRGVKRV MST S S P+KK DPS+D D S
Sbjct: 419 HLGVVGRGVKRVVMSTSSTGSSPAKKPALDPSADDEDDST 458
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224084225|ref|XP_002307236.1| predicted protein [Populus trichocarpa] gi|222856685|gb|EEE94232.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 318/479 (66%), Positives = 375/479 (78%), Gaps = 22/479 (4%)
Query: 9 TVAEQTAQPTETVGTTQASVEATMESVTVSGTE-----STCN--NNCETSGAIADGEREK 61
+V E P E Q SVEAT++ T + ++ STCN NN ETS + K
Sbjct: 6 SVTEPKTAPKEN----QTSVEATIKGSTTTSSQGGAADSTCNDDNNGETS------DPRK 55
Query: 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121
+++FA EL EKGTNALKE+D+ EA ECFSRALEIRV H+GELALECVNAYY YGRALLYK
Sbjct: 56 SLDFAVELSEKGTNALKENDFSEAVECFSRALEIRVLHHGELALECVNAYYLYGRALLYK 115
Query: 122 AQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADD 181
AQEEADPL VPKK+ +S+Q +KD + +N VNGE S+ASVSS+ E+ SN+ + AA
Sbjct: 116 AQEEADPLAMVPKKDSESKQDDNKDGASRNFVNGEFSSASVSSNVEEGRGSNHPEGAAGG 175
Query: 182 AVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALA 241
E+D+EG+D E++AEADE+ESDLDLAWKMLDVARAIAEKH D+M+KVDILSALA
Sbjct: 176 EE---EEDDDEGSDDEDLAEADEEESDLDLAWKMLDVARAIAEKHLDDTMDKVDILSALA 232
Query: 242 EVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301
EVALEREDIETSLSDYQKAL+ILER+VEPDSRH+AELNFRICLCLEIGSKPQEAIPYCQ+
Sbjct: 233 EVALEREDIETSLSDYQKALSILERLVEPDSRHLAELNFRICLCLEIGSKPQEAIPYCQE 292
Query: 302 AISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSG 361
AISVCK+R+QRL+ EVKS ESATSSA +ELD+G+QQSS+ Q DK +TDKEAEIETLSG
Sbjct: 293 AISVCKARLQRLIKEVKSSTESATSSAVSELDEGVQQSSN-VQADKSVTDKEAEIETLSG 351
Query: 362 LCGDLEKKLEDLQQVALFPKSILSEILGMASAKAKGDEKSSTSAVLSSSRMGTANSDGDF 421
L +LEKKLEDLQQ+ L PKSIL+EILGM S KAKG EKS++ + SSS++ ANS G F
Sbjct: 352 LSAELEKKLEDLQQLVLNPKSILAEILGMVSDKAKGGEKSASPNLTSSSQLVVANSSGSF 411
Query: 422 DSPTVSTAHTSGAAGVTHLGVVGRGVKRV-SMSTGSAESRPSKKSTSDPSSDKGDGSVC 479
DSPT+S+AHT+G GVT LGV GRGVKRV + + S KK T DPSSDKGDG C
Sbjct: 412 DSPTISSAHTNGVLGVTDLGVAGRGVKRVLTSTGSVGSSSAVKKPTPDPSSDKGDGKTC 470
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449460622|ref|XP_004148044.1| PREDICTED: uncharacterized protein LOC101207851 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 285/491 (58%), Positives = 364/491 (74%), Gaps = 27/491 (5%)
Query: 1 MAEEEGSQTVAEQTAQPT--ETVGTTQASVEATMESVTVSGTESTCNNNCE------TSG 52
MA+E+ V+ +P ET+ + E T ES+ G +S+CN+ E +
Sbjct: 1 MADEDPPSEVSVTVDKPKLDETLNVS----EVTTESIVQGGLQSSCNSPNEKKPITQPTA 56
Query: 53 AIADGEREKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYY 112
+D +K+++ A+EL+EKG+ A+K++D+ EA +CFSRALEIR +HYGELA ECV YY
Sbjct: 57 QTSDESGDKSLDLAEELLEKGSKAMKDNDFNEAVDCFSRALEIRAAHYGELASECVKLYY 116
Query: 113 QYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSS 172
+YG ALLYKAQEEADPL +VPKKEG S DKDDSVK+AVNGESS ASVSS+AE
Sbjct: 117 KYGCALLYKAQEEADPLGAVPKKEGQS----DKDDSVKSAVNGESSKASVSSNAE--AVD 170
Query: 173 NNQDEAADDAVPGDNEEDE-EGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSM 231
D+ ++ D +E+E +G+D E++A+ADEDESDLDLAWKMLDVARAI EK D+M
Sbjct: 171 GVTDDVSETVSKKDRDEEESDGSDAEDLADADEDESDLDLAWKMLDVARAIVEKDSADTM 230
Query: 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK 291
EKVDILSALAEVALEREDI TSLSDYQKAL+ILER+VEPD+R +AELNFR+CLCLE GS+
Sbjct: 231 EKVDILSALAEVALEREDIGTSLSDYQKALSILERLVEPDNRQLAELNFRVCLCLEFGSQ 290
Query: 292 PQEAIPYCQKAISVCKSRVQRLLNEVKS--LGESATSSAPAELDDGIQQSSSEFQNDKLL 349
PQEAI YCQKAIS+CKSRV RL +EVKS + +A+S++ +E + + + S+ N+
Sbjct: 291 PQEAISYCQKAISICKSRVVRLTDEVKSVIVPTTASSTSGSEPEVPLSSNGSQTDNENAT 350
Query: 350 TDKEAEIETLSGLCGDLEKKLEDLQQVALFPKSILSEILGMASAKAKGDEKS-STSAVLS 408
T+K++EI+TLSGL +LEKKLEDLQQ A PKSILSEILG+ SAK ++ + +V +
Sbjct: 351 TEKQSEIDTLSGLLVELEKKLEDLQQQASNPKSILSEILGIGSAKPNLEKITPPVPSVFN 410
Query: 409 SSRMGTANSDGDFDSPTVSTAHTSGAAGVTHLGVVGRGVKRVSMSTGSAESRPSKKSTSD 468
SS+MG+A+S+G FDSPTVSTAHT+ GVTHLGVVGRGVKRVS ++ S +S P+KK D
Sbjct: 411 SSQMGSAHSNGGFDSPTVSTAHTN---GVTHLGVVGRGVKRVSTNSESNDSNPTKKLAKD 467
Query: 469 PSS--DKGDGS 477
SS DKGD S
Sbjct: 468 LSSSQDKGDSS 478
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449510293|ref|XP_004163624.1| PREDICTED: uncharacterized LOC101207851 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 284/491 (57%), Positives = 363/491 (73%), Gaps = 27/491 (5%)
Query: 1 MAEEEGSQTVAEQTAQPT--ETVGTTQASVEATMESVTVSGTESTCNNNCE------TSG 52
MA+E+ V+ +P ET+ + E T ES+ G +S+CN+ E +
Sbjct: 1 MADEDPPSEVSVTVDKPKLDETLNVS----EVTTESIVQGGLQSSCNSPNEKKPITQPTA 56
Query: 53 AIADGEREKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYY 112
+D +K+++ A+EL+EKG+ A+K++D+ EA +CFSRALEIR +HYGELA ECV YY
Sbjct: 57 QTSDESGDKSLDLAEELLEKGSKAMKDNDFNEAVDCFSRALEIRAAHYGELASECVKLYY 116
Query: 113 QYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSS 172
+YG ALLYKAQEEADPL +VPKKE S DKDDSVK+AVNGESS ASVSS+AE
Sbjct: 117 KYGCALLYKAQEEADPLGAVPKKECQS----DKDDSVKSAVNGESSKASVSSNAE--AVD 170
Query: 173 NNQDEAADDAVPGDNEEDE-EGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSM 231
D+ ++ D +E+E +G+D E++A+ADEDESDLDLAWKMLDVARAI EK D+M
Sbjct: 171 GVTDDVSETVSKKDRDEEESDGSDAEDLADADEDESDLDLAWKMLDVARAIVEKDSADTM 230
Query: 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK 291
EKVDILSALAEVALEREDI TSLSDYQKAL+ILER+VEPD+R +AELNFR+CLCLE GS+
Sbjct: 231 EKVDILSALAEVALEREDIGTSLSDYQKALSILERLVEPDNRQLAELNFRVCLCLEFGSQ 290
Query: 292 PQEAIPYCQKAISVCKSRVQRLLNEVKS--LGESATSSAPAELDDGIQQSSSEFQNDKLL 349
PQEAI YCQKAIS+CKSRV RL +EVKS + +A+S++ +E + + + S+ N+
Sbjct: 291 PQEAISYCQKAISICKSRVVRLTDEVKSVIVPTTASSTSGSEPEVPLSSNGSQTDNENAT 350
Query: 350 TDKEAEIETLSGLCGDLEKKLEDLQQVALFPKSILSEILGMASAKAKGDEKS-STSAVLS 408
T+K++EI+TLSGL +LEKKLEDLQQ A PKSILSEILG+ SAK ++ + +V +
Sbjct: 351 TEKQSEIDTLSGLLVELEKKLEDLQQQASNPKSILSEILGIGSAKPNLEKITPPVPSVFN 410
Query: 409 SSRMGTANSDGDFDSPTVSTAHTSGAAGVTHLGVVGRGVKRVSMSTGSAESRPSKKSTSD 468
SS+MG+A+S+G FDSPTVSTAHT+ GVTHLGVVGRGVKRVS ++ S +S P+KK D
Sbjct: 411 SSQMGSAHSNGGFDSPTVSTAHTN---GVTHLGVVGRGVKRVSTNSESNDSNPTKKLAKD 467
Query: 469 PSS--DKGDGS 477
SS DKGD S
Sbjct: 468 LSSSQDKGDSS 478
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147791854|emb|CAN61830.1| hypothetical protein VITISV_027632 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 287/474 (60%), Positives = 341/474 (71%), Gaps = 52/474 (10%)
Query: 5 EGSQTVAEQTAQPTETVGTTQASVEATMESVTVSGTESTCNNNCETSGAIADGEREKTVE 64
E + T E+ PT V Q+S EAT+ES TES+CNNN +TS +D +REK++E
Sbjct: 11 ENAATKVEEALAPTGQVA--QSSNEATIESNAQGDTESSCNNNADTSARPSDADREKSLE 68
Query: 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124
+A+ELMEKG+ A+KESD+ EA +CFSRALEIRV+H+GELA ECVN YY+YG ALLYKAQE
Sbjct: 69 YAEELMEKGSKAVKESDFSEATDCFSRALEIRVAHHGELAFECVNTYYKYGCALLYKAQE 128
Query: 125 EADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVP 184
EADPL ++P KE +S + S+KD S+KNAVN ESSTASV +AEQ GSSN+Q AADD
Sbjct: 129 EADPLATMPNKEAESHENSNKDGSMKNAVNDESSTASV--NAEQDGSSNDQKVAADDDTN 186
Query: 185 GD-NEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH-WGDSMEKVDILSALAE 242
G EE++E +D E++AEADEDESDLDLAWKMLDVARAI EKH D+MEK
Sbjct: 187 GKEQEEEDEESDDEDLAEADEDESDLDLAWKMLDVARAIVEKHSAADTMEK--------- 237
Query: 243 VALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302
DIETSLSDYQKAL+ILER+VEPDSRHIAEL + I EIGSK QEAIPYCQ+A
Sbjct: 238 ------DIETSLSDYQKALSILERLVEPDSRHIAEL-YPIPFP-EIGSKAQEAIPYCQRA 289
Query: 303 ISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGL 362
IS+CKSRVQRL NE+KSL ES S ELD QQSS+
Sbjct: 290 ISICKSRVQRLSNEIKSLSESPAISPTPELDQSAQQSSN--------------------- 328
Query: 363 CGDLEKKLEDLQQVALFPKSILSEILGMASAKAKGDEKSSTSAVLSSSRMGTANSDGDFD 422
LEDLQQ+ P SILSEILGM SAKA+G +K ++ +V+ SS++G+ANS G FD
Sbjct: 329 -------LEDLQQLVSNPTSILSEILGMMSAKARGADKGASPSVMGSSQIGSANSHGGFD 381
Query: 423 SPTVSTA-HTSGAAGVTHLGVVGRGVKRVSMSTGSAESRPSKKSTSDPSSDKGD 475
SPTVSTA HT+GAAGVTHLGVVGRGVKRVSM++G+AES P KK D S DKGD
Sbjct: 382 SPTVSTASHTNGAAGVTHLGVVGRGVKRVSMNSGTAESSPMKKPPLDSSLDKGD 435
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798194|ref|XP_002866981.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297312817|gb|EFH43240.1| tetratricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 273/500 (54%), Positives = 346/500 (69%), Gaps = 48/500 (9%)
Query: 8 QTVAEQTAQPTETVGTTQASVEATMESVTVSGTESTCNNNCETSGA-------IADGERE 60
QT+ E + +T+ AS+EAT+ESV GTESTCNN+ + A + D ERE
Sbjct: 15 QTLTEPATEIPQTLEPNLASIEATVESVVQGGTESTCNNDANNNNAADSAATEVCDEERE 74
Query: 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLY 120
KT+EFA+EL EKG+ LKE+D+ EA +CFSRALEIRV+H+GEL ECVNAYY+YG+ALL
Sbjct: 75 KTLEFAEELTEKGSVLLKENDFAEAVDCFSRALEIRVAHFGELDAECVNAYYRYGKALLE 134
Query: 121 KAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAAD 180
KAQ EADPL ++PKKEG+ QQ NGES SV SS N +
Sbjct: 135 KAQAEADPLGNMPKKEGEVQQ---------ECSNGESLAPSVVSS--------NTERQGS 177
Query: 181 DAVPGDNEEDEEGNDGENV-------AEADEDESDLDLAWKMLDVARAIAEKHWGDSMEK 233
+ + ++G DGE+ A+ DEDESDLD+AWKMLD+ARAI +K ++MEK
Sbjct: 178 SSGQDGSGGKDQGEDGEDCQDDELSDADGDEDESDLDMAWKMLDIARAITDKQSTETMEK 237
Query: 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 293
VDIL +LAE++LEREDIE+SL+DY+ AL+ILER+VEPDSRH AELNFRIC+CLE G +P+
Sbjct: 238 VDILCSLAEISLEREDIESSLTDYKNALSILERLVEPDSRHTAELNFRICICLETGCQPK 297
Query: 294 EAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKE 353
EAIPYCQKA+ +CK+R++RL NE+K SATSS +E+D+GIQQSS+ DK +DKE
Sbjct: 298 EAIPYCQKAMFICKARMERLSNEIKGASCSATSSTVSEIDEGIQQSSNVPYIDKSASDKE 357
Query: 354 AEIETLSGLCGDLEKK-------LEDLQQVALFPKSILSEILGMASAKAKGDEK--SSTS 404
AEI L+GL DLEKK LEDL+Q A PK +L+E++GM SAKA +K + +
Sbjct: 358 AEIGVLAGLAEDLEKKARKLNLSLEDLKQQAENPKQVLAELMGMVSAKANASDKVVPAAA 417
Query: 405 AVLSSSRMGTANSD--GDFDSPTVSTAHT-----SGAAGVTHLGVVGRGVKRVSMSTGSA 457
A +SSSRMGT N++ + +SPTVSTAHT GA+GVTHLGVVGRGVKRV M+ S
Sbjct: 418 AEMSSSRMGTVNTNLGKELESPTVSTAHTGAAGGGGASGVTHLGVVGRGVKRVLMNATSV 477
Query: 458 ESRPSKKSTSDPSSDKGDGS 477
ES SKK D SDK DG+
Sbjct: 478 ESSASKKPAPD-FSDKADGN 496
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388519625|gb|AFK47874.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 254/419 (60%), Positives = 318/419 (75%), Gaps = 21/419 (5%)
Query: 58 EREKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRA 117
E +K+++ A+ELMEKG A+KE+D+GEAA+ +SRALEIRV+HYGELA ECV+ YY+YG A
Sbjct: 55 EGQKSLDLANELMEKGNKAMKENDFGEAADNYSRALEIRVAHYGELAPECVHTYYKYGCA 114
Query: 118 LLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDE 177
LLYKAQEEADPL +VPKK+ S GSDKD+ VK AVN ESSTAS +S+ EQ +SNNQ+
Sbjct: 115 LLYKAQEEADPLGAVPKKQEGSPHGSDKDEPVKGAVNAESSTASFASNVEQDVTSNNQES 174
Query: 178 AADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDIL 237
D+ +++ED+E +D E +AE DEDESDLDLAWKMLDVARAI EK +ME+VDIL
Sbjct: 175 EVDNVSGKNDQEDDEDSDTEELAEGDEDESDLDLAWKMLDVARAIVEKQSVHTMEQVDIL 234
Query: 238 SALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 297
S LA+VALERED ETSLSDYQKAL+ILE++VEPD R+IA++NFRICLCLE+ SKP+EA+
Sbjct: 235 STLADVALEREDFETSLSDYQKALSILEQLVEPDDRNIADINFRICLCLEVSSKPEEAVA 294
Query: 298 YCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIE 357
Y +KA SVCK+R+ RL NEVKS S+ + + + DK+AEIE
Sbjct: 295 YLEKATSVCKARIDRLTNEVKS-----------------FSESTSSETNNSIADKQAEIE 337
Query: 358 TLSGLCGDLEKKLEDLQQVALFPKSILSEILGMASAKAKGDEKSSTSAVLSSSRMGTANS 417
L+GL +LEKKLEDLQQ+ PKSIL+EIL ASAKA G K + A +SSS++ T NS
Sbjct: 338 ILAGLSSELEKKLEDLQQLIANPKSILAEIL--ASAKA-GSGKEPSLARVSSSQLATENS 394
Query: 418 DGDFDSPTVSTAHTSGAAGVTHLGVVGRGVKRVSMSTGSAESRPSKKSTSDPSSDKGDG 476
G FDSPT+STAHT+G+AGVTHLGVVGRGVKR S +T + E+ SKK + + +KGDG
Sbjct: 395 SGSFDSPTISTAHTNGSAGVTHLGVVGRGVKR-SSNTSTTEASISKKPALETTEEKGDG 452
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18419996|ref|NP_568019.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] gi|13877853|gb|AAK44004.1|AF370189_1 unknown protein [Arabidopsis thaliana] gi|17065596|gb|AAL33778.1| unknown protein [Arabidopsis thaliana] gi|332661368|gb|AEE86768.1| tetratricopeptide repeat domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 271/486 (55%), Positives = 344/486 (70%), Gaps = 26/486 (5%)
Query: 8 QTVAEQTAQPTETVGTTQASVEATMESVTVSGTESTCNNNCETSGA-------IADGERE 60
QT+ E + +T+ AS+EAT+ESV GTESTCNN+ + A + D ERE
Sbjct: 15 QTLTEPATEIAQTLEPNLASIEATVESVVQGGTESTCNNDANNNNAADSAATEVCDEERE 74
Query: 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLY 120
KT+EFA+EL EKG+ LKE+D+ EA +CFSRALEIRV+HYGEL EC+NAYY+YG ALL
Sbjct: 75 KTLEFAEELTEKGSVFLKENDFAEAVDCFSRALEIRVAHYGELDAECINAYYRYGLALLA 134
Query: 121 KAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAAD 180
KAQ EADPL ++PKKEG+ QQ S NGES SV S + S++ E +
Sbjct: 135 KAQAEADPLGNMPKKEGEVQQESS---------NGESLAPSVVSGDPERQGSSSGQEGSG 185
Query: 181 DAVPGDNEED-EEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSA 239
G++ ED ++ + + +ADEDESDLD+AWKMLD+AR I +K ++MEKVDIL +
Sbjct: 186 GKDQGEDGEDCQDDDLSDADGDADEDESDLDMAWKMLDIARVITDKQSTETMEKVDILCS 245
Query: 240 LAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC 299
LAEV+LEREDIE+SLSDY+ AL+ILER+VEPDSR AELNFRIC+CLE G +P+EAIPYC
Sbjct: 246 LAEVSLEREDIESSLSDYKNALSILERLVEPDSRRTAELNFRICICLETGCQPKEAIPYC 305
Query: 300 QKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETL 359
QKA+ +CK+R++RL NE+K SATSS +E+D+GIQQSS+ DK +DKE EI L
Sbjct: 306 QKALLICKARMERLSNEIKGASGSATSSTVSEIDEGIQQSSNVPYIDKSASDKEVEIGDL 365
Query: 360 SGLCGDLEKKLEDLQQVALFPKSILSEILGMASAKAKGDEKSSTSAV-LSSSRMGTANSD 418
+GL DLEKKLEDL+Q A PK +L+E++GM SAK +K +A +SSSRMGT N++
Sbjct: 366 AGLAEDLEKKLEDLKQQAENPKQVLAELMGMVSAKPNASDKVVPAAAEMSSSRMGTVNTN 425
Query: 419 --GDFDSPTVSTAHT-----SGAAGVTHLGVVGRGVKRVSMSTGSAESRPSKKSTSDPSS 471
D +SPTVSTAHT A+GVTHLGVVGRGVKRV M+T S ES SKK + S
Sbjct: 426 FGKDLESPTVSTAHTGAAGGGAASGVTHLGVVGRGVKRVLMNTTSIESSASKKPALE-FS 484
Query: 472 DKGDGS 477
DK DG+
Sbjct: 485 DKADGN 490
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|298205066|emb|CBI38362.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 240/340 (70%), Positives = 279/340 (82%), Gaps = 4/340 (1%)
Query: 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPL 129
MEKG+ A+KESD+ EA +CFSRALEIRV+H+GELA ECVN YY+YG ALLYKAQEEADPL
Sbjct: 1 MEKGSKAVKESDFSEATDCFSRALEIRVAHHGELAFECVNTYYKYGCALLYKAQEEADPL 60
Query: 130 VSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEE 189
++P KE +S + S+KD S+KNAVN ESSTASV+ AEQ GSSN+Q AADD G +E
Sbjct: 61 ATMPNKEAESHENSNKDGSMKNAVNDESSTASVN--AEQDGSSNDQKVAADDDTNGKEQE 118
Query: 190 DEEGNDGEN-VAEADEDESDLDLAWKMLDVARAIAEKH-WGDSMEKVDILSALAEVALER 247
+E+ + +AEADEDESDLDLAWKMLDVARAI EKH D+MEKVDILSALAEVALER
Sbjct: 119 EEDEESDDEDLAEADEDESDLDLAWKMLDVARAIVEKHSAADTMEKVDILSALAEVALER 178
Query: 248 EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307
EDIETSLSDYQKAL+ILER+VEPDSRHIAELNFRICLCLEIGSK QEAIPYCQ+AIS+CK
Sbjct: 179 EDIETSLSDYQKALSILERLVEPDSRHIAELNFRICLCLEIGSKAQEAIPYCQRAISICK 238
Query: 308 SRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLE 367
SRVQRL NE+KSL ES S ELD QQSS+ Q ++DKE+EIETL+GL +LE
Sbjct: 239 SRVQRLSNEIKSLSESPAISPTPELDQSAQQSSNVSQAGNSISDKESEIETLNGLASELE 298
Query: 368 KKLEDLQQVALFPKSILSEILGMASAKAKGDEKSSTSAVL 407
KKLEDLQQ+ P SILSEILGM SAKA+G +K ++ +V+
Sbjct: 299 KKLEDLQQLVSNPTSILSEILGMMSAKARGADKGASPSVM 338
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 479 | ||||||
| TAIR|locus:2115045 | 492 | AT4G37210 [Arabidopsis thalian | 0.922 | 0.898 | 0.528 | 6.6e-113 | |
| UNIPROTKB|G4N2R8 | 533 | MGG_04894 "Histone H1-binding | 0.373 | 0.335 | 0.223 | 3.7e-10 | |
| UNIPROTKB|I3LRP1 | 742 | NASP "Uncharacterized protein" | 0.421 | 0.272 | 0.251 | 7.6e-10 | |
| UNIPROTKB|Q2T9P4 | 777 | NASP "Nuclear autoantigenic sp | 0.423 | 0.261 | 0.243 | 8.5e-10 | |
| UNIPROTKB|E2RN30 | 789 | NASP "Uncharacterized protein" | 0.423 | 0.257 | 0.229 | 1.9e-09 | |
| RGD|1359609 | 776 | Nasp "nuclear autoantigenic sp | 0.423 | 0.261 | 0.229 | 2.3e-09 | |
| UNIPROTKB|P49321 | 788 | NASP "Nuclear autoantigenic sp | 0.421 | 0.256 | 0.242 | 2.4e-09 | |
| FB|FBgn0037624 | 492 | CG8223 [Drosophila melanogaste | 0.407 | 0.396 | 0.225 | 2.8e-09 | |
| ZFIN|ZDB-GENE-030131-5511 | 624 | nasp "nuclear autoantigenic sp | 0.434 | 0.333 | 0.243 | 9.6e-09 | |
| MGI|MGI:1355328 | 773 | Nasp "nuclear autoantigenic sp | 0.423 | 0.262 | 0.224 | 1.4e-08 |
| TAIR|locus:2115045 AT4G37210 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1114 (397.2 bits), Expect = 6.6e-113, P = 6.6e-113
Identities = 247/467 (52%), Positives = 310/467 (66%)
Query: 8 QTVAEQTAQPTETVGTTQASVEATMESVTVSGTESTCNNNCETSGA-------IADGERE 60
QT+ E + +T+ AS+EAT+ESV GTESTCNN+ + A + D ERE
Sbjct: 15 QTLTEPATEIAQTLEPNLASIEATVESVVQGGTESTCNNDANNNNAADSAATEVCDEERE 74
Query: 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLY 120
KT+EFA+EL EKG+ LKE+D+ EA +CFSRALEIRV+HYGEL EC+NAYY+YG ALL
Sbjct: 75 KTLEFAEELTEKGSVFLKENDFAEAVDCFSRALEIRVAHYGELDAECINAYYRYGLALLA 134
Query: 121 KAQEEADPLVSVPKKEXXXXXXXXXXXXVKNAVNGEXXXXXXXXXX-EQHGSSNNQDEAA 179
KAQ EADPL ++PKKE + + NGE E+ GSS+ Q+ +
Sbjct: 135 KAQAEADPLGNMPKKEGEVQ---------QESSNGESLAPSVVSGDPERQGSSSGQEGSG 185
Query: 180 DDAVPXXXXXXXXXXXXXXVXXXXXXXXXXXXXWKMLDVARAIAEKHWGDSMEKVDILSA 239
WKMLD+AR I +K ++MEKVDIL +
Sbjct: 186 GKDQGEDGEDCQDDDLSDADGDADEDESDLDMAWKMLDIARVITDKQSTETMEKVDILCS 245
Query: 240 LAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC 299
LAEV+LEREDIE+SLSDY+ AL+ILER+VEPDSR AELNFRIC+CLE G +P+EAIPYC
Sbjct: 246 LAEVSLEREDIESSLSDYKNALSILERLVEPDSRRTAELNFRICICLETGCQPKEAIPYC 305
Query: 300 QKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETL 359
QKA+ +CK+R++RL NE+K SATSS +E+D+GIQQSS+ DK +DKE EI L
Sbjct: 306 QKALLICKARMERLSNEIKGASGSATSSTVSEIDEGIQQSSNVPYIDKSASDKEVEIGDL 365
Query: 360 SGLCGDLEKKLEDLQQVALFPKSILSEILGMASAKAKGDEKSSTSAV-LSSSRMGTANSD 418
+GL DLEKKLEDL+Q A PK +L+E++GM SAK +K +A +SSSRMGT N++
Sbjct: 366 AGLAEDLEKKLEDLKQQAENPKQVLAELMGMVSAKPNASDKVVPAAAEMSSSRMGTVNTN 425
Query: 419 -G-DFDSPTVSTAHTS----GAA-GVTHLGVVGRGVKRVSMSTGSAE 458
G D +SPTVSTAHT GAA GVTHLGVVGRGVKRV M+T S E
Sbjct: 426 FGKDLESPTVSTAHTGAAGGGAASGVTHLGVVGRGVKRVLMNTTSIE 472
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| UNIPROTKB|G4N2R8 MGG_04894 "Histone H1-binding protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 113 (44.8 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 42/188 (22%), Positives = 89/188 (47%)
Query: 235 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294
D LAE++LE E ++ D +K+L +++ +S +AE +F++ L LE S
Sbjct: 302 DTHDLLAEISLEGERFHDAIPDSRKSLEFKKQLYPEESDILAEAHFKLSLALEFAS---- 357
Query: 295 AIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDG-IQQSSSEFQNDKLLTDKE 353
+ ++ + Q L +E + E+A +S +L + ++ +++ D +T
Sbjct: 358 IVATDEEKTQGVQHVDQALRDEAATELEAAIASTKLKLQNKEVELATNHSPEDNDVT--R 415
Query: 354 AEIETLSGLCGDLEKKLEDLQQVALFPKSILSEI--LGMASAKAKGDEKSSTSAVLSSSR 411
A+I + + D+E++L DL+ + +IL + LG A G+ + A + +++
Sbjct: 416 AQIADIKEVIADMEQRLVDLRNAPMDVDAILGKDNPLGGILGAALGESAAQVEARIEAAK 475
Query: 412 MGTANSDG 419
+ G
Sbjct: 476 KTATDLTG 483
|
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| UNIPROTKB|I3LRP1 NASP "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 137 (53.3 bits), Expect = 7.6e-10, Sum P(2) = 7.6e-10
Identities = 55/219 (25%), Positives = 105/219 (47%)
Query: 213 WKMLDVARAIAEKHWGDSMEKVDILSA-----LAEVALEREDIETSLSDYQKALTILERM 267
W MLD+A+ I ++ D+ E + +A L EV++E E+ ++ ++Q L + E+
Sbjct: 473 WDMLDLAKIIFKRQ--DTKE-AQLYAAQAHLKLGEVSVESENYVQAVEEFQACLNLQEQY 529
Query: 268 VEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSS 327
+E R +AE ++++ L S+ EA+ K+I V + R+ +LNE E + +
Sbjct: 530 LEAHDRLLAETHYQLGLAYGYNSQYDEAVTQFSKSIEVIEKRMA-VLNEQMKEAEGSPAE 588
Query: 328 APAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKK--LEDLQQVALFPKSILS 385
E+++ +++ E + +K+ KE++ SG +L K L + P S
Sbjct: 589 YEKEIEE-LKELLPEIK-EKIEDAKESQ---RSGNVAELALKATLVESSTSGFTPSGGGS 643
Query: 386 EILGMASAKAKGDEKSSTSAVLSSSRMGTANSDGDFDSP 424
+ +AS K D SS++ V S + + +SP
Sbjct: 644 SVAMIASRKP-ADGASSSNCVTDISHLVRKKRKPEEESP 681
|
|
| UNIPROTKB|Q2T9P4 NASP "Nuclear autoantigenic sperm protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 137 (53.3 bits), Expect = 8.5e-10, Sum P(2) = 8.5e-10
Identities = 53/218 (24%), Positives = 107/218 (49%)
Query: 213 WKMLDVARAIAEKHWGDSMEKVDILSA-----LAEVALEREDIETSLSDYQKALTILERM 267
W MLD+A+ I ++ D+ E + +A L EV++E E+ ++ ++Q L + E+
Sbjct: 508 WDMLDLAKIIFKRQ--DTKE-AQLYAAQAHLKLGEVSVESENYLQAVEEFQACLNLQEQY 564
Query: 268 VEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSS 327
+E R +AE ++++ L S+ EA+ K+I V + R+ +LNE E + +
Sbjct: 565 LEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIEKRMA-VLNEQMKEAEGSPTE 623
Query: 328 APAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQ-VALFPKSILSE 386
E+++ +++ E + +K+ KE++ SG +L K ++ + F S S
Sbjct: 624 YEKEIEE-LKELLPEIR-EKIEDAKESQ---RSGNVAELALKATLVESSTSGFTPSGGSS 678
Query: 387 ILGMASAKAKGDEKSSTSAVLSSSRMGTANSDGDFDSP 424
+ M +++ D SS++ V S + + +SP
Sbjct: 679 SVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESP 716
|
|
| UNIPROTKB|E2RN30 NASP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 134 (52.2 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 50/218 (22%), Positives = 107/218 (49%)
Query: 213 WKMLDVARAIAEKHWGDSMEKVDILSA-----LAEVALEREDIETSLSDYQKALTILERM 267
W MLD+A+ I ++ ++ + +A L EV++E E+ ++ ++Q L + E+
Sbjct: 520 WDMLDLAKIIFKRQ---ETKEAQLYAAQAHLKLGEVSVESENYVQAVEEFQACLNLQEQY 576
Query: 268 VEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSS 327
+E R +AE ++++ L S+ EA+ K+I V + R+ L ++K E +++
Sbjct: 577 LEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIEKRMAVLSEQMKE-AEGSSTE 635
Query: 328 APAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQ-VALFPKSILSE 386
E+++ +++ E + +K+ KE++ SG +L K ++ + F S S
Sbjct: 636 YEKEIEE-LKELLPEIR-EKIEDAKESQ---RSGNVAELALKATLVESSTSGFTPSGGST 690
Query: 387 ILGMASAKAKGDEKSSTSAVLSSSRMGTANSDGDFDSP 424
+ M +++ D SS++ V S + + +SP
Sbjct: 691 SVSMVASRKPTDGASSSNCVTDISHLVRKKRKPEEESP 728
|
|
| RGD|1359609 Nasp "nuclear autoantigenic sperm protein (histone-binding)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 133 (51.9 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 50/218 (22%), Positives = 107/218 (49%)
Query: 213 WKMLDVARAIAEKHWGDSMEKVDILSA-----LAEVALEREDIETSLSDYQKALTILERM 267
W MLD+A+ I ++ ++ + +A L EV++E E+ ++ ++Q L++ E+
Sbjct: 507 WDMLDLAKIIFKRQ---ETKEAQLYAAQAHLKLGEVSVESENYIQAVEEFQACLSLQEQY 563
Query: 268 VEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSS 327
+E R +AE ++++ L S+ EA+ K+I V + R+ LL ++K E + +
Sbjct: 564 LEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFGKSIDVIEKRMAVLLEQMKE-AEGSFTE 622
Query: 328 APAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQ-VALFPKSILSE 386
E+++ +++ E + +K+ KE++ SG +L K ++ + F S
Sbjct: 623 YEKEIEE-LKELLPEIR-EKIEDAKESQ---RSGNVAELALKATLVESSTSGFTPSGAGA 677
Query: 387 ILGMASAKAKGDEKSSTSAVLSSSRMGTANSDGDFDSP 424
+ M +++ D SS++ V S + + +SP
Sbjct: 678 SVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESP 715
|
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| UNIPROTKB|P49321 NASP "Nuclear autoantigenic sperm protein" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 133 (51.9 bits), Expect = 2.4e-09, Sum P(2) = 2.4e-09
Identities = 53/219 (24%), Positives = 106/219 (48%)
Query: 213 WKMLDVARAIAEKHWGDSMEKVDILSA-----LAEVALEREDIETSLSDYQKALTILERM 267
W MLD+A+ I ++ ++ + +A L EV++E E+ ++ ++Q L + E+
Sbjct: 519 WDMLDLAKIIFKRQ---ETKEAQLYAAQAHLKLGEVSVESENYVQAVEEFQSCLNLQEQY 575
Query: 268 VEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSS 327
+E R +AE ++++ L S+ EA+ K+I V ++R+ L +VK E +++
Sbjct: 576 LEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFSKSIEVIENRMAVLNEQVKE-AEGSSAE 634
Query: 328 APAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKK--LEDLQQVALFPKSILS 385
E+++ +++ E + +K+ KE++ SG +L K L + P S
Sbjct: 635 YKKEIEE-LKELLPEIR-EKIEDAKESQ---RSGNVAELALKATLVESSTSGFTPGGGGS 689
Query: 386 EILGMASAKAKGDEKSSTSAVLSSSRMGTANSDGDFDSP 424
+ +AS K D SS++ V S + + +SP
Sbjct: 690 SVSMIASRKPT-DGASSSNCVTDISHLVRKKRKPEEESP 727
|
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| FB|FBgn0037624 CG8223 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 107 (42.7 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 47/208 (22%), Positives = 96/208 (46%)
Query: 213 WKMLDVARAIAEKHWGDSMEKV-DILSALAEVALEREDIETSLSDYQKALTILERMVEPD 271
W++L+ A I + + + ++ + LA + E +E + DY+KAL I + +
Sbjct: 262 WEILEAAAQIFSRQGLSGLPYLAEVQTELANIEFENGILEAAREDYEKALKIHGELPTRN 321
Query: 272 SRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAE 331
R +AEL+++I L + +E +++ SV ++ + E+K E +
Sbjct: 322 RRALAELHYKIGLTYLMQQLNKEGATALRQS-SVL---IEEEIAEIKGKDEPSERDRNNM 377
Query: 332 LDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQ--VALFPKSILSEILG 389
LD ++++ E K+ +E + +T++ + L+ ++ + A S S G
Sbjct: 378 LD--LEETKQEILA-KIQEIEEMQAQTIAEVRAALDSYIKPMSSGDAAAASSSSSSSANG 434
Query: 390 MASAKA---KGDEKSSTSAVLSSSRMGT 414
AS+ + KG +S+S + SSS T
Sbjct: 435 AASSSSSSSKGAAAASSSTISSSSAKPT 462
|
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| ZFIN|ZDB-GENE-030131-5511 nasp "nuclear autoantigenic sperm protein (histone-binding)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 128 (50.1 bits), Expect = 9.6e-09, Sum P(2) = 9.6e-09
Identities = 53/218 (24%), Positives = 97/218 (44%)
Query: 213 WKMLDVARAIAEKHWG--DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEP 270
W+ML+VA+ I ++ D + I LAEV +E + +L D + LT+ + +
Sbjct: 365 WEMLEVAKVIYKRKDDKEDQLMAAQIHLKLAEVGVESGNYSQALEDSNECLTLQLKHLPS 424
Query: 271 DSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEV--KSLGESATSSA 328
SR + E ++++ ++ +AI + +I V +SR+ +L EV K+ GE A
Sbjct: 425 HSRLLTETHYQLGTTYSYTTQYNQAIEHFSNSIKVIESRLA-MLQEVIDKAEGEDAAKEE 483
Query: 329 PAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQVALFPKSILSEIL 388
E ++ ++Q E + +K+ KE++ T + + + L + FP
Sbjct: 484 KGEFEE-LKQLLPEIK-EKIEDAKESQ-RTAAAASEAIHQTLAGASTSSAFPTENGGPSS 540
Query: 389 GMAS--AKAKGDEKSSTSAVLSSSRMGTANSDGDFDSP 424
AS A D SS+ + S + D +SP
Sbjct: 541 STASQIAVRPADGASSSKSASDISHLVRKKRKPDEESP 578
|
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| MGI|MGI:1355328 Nasp "nuclear autoantigenic sperm protein (histone-binding)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 126 (49.4 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 49/218 (22%), Positives = 106/218 (48%)
Query: 213 WKMLDVARAIAEKHWGDSMEKVDILSA-----LAEVALEREDIETSLSDYQKALTILERM 267
W MLD+A+ I ++ ++ + +A L EV++E E+ ++ ++Q L++ E+
Sbjct: 505 WDMLDLAKIIFKRQ---ETKEAQLYAAQAHLKLGEVSVESENYIQAVEEFQACLSLQEQY 561
Query: 268 VEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSS 327
+E R +AE ++++ L S+ EA+ K+I V + R+ L ++K E + +
Sbjct: 562 LEAHDRLLAETHYQLGLAYGYNSQYDEAVAQFGKSIDVIEKRMAVLHEQMKE-AEGSFTE 620
Query: 328 APAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQ-VALFPKSILSE 386
E+++ +++ E + +K+ KE++ SG +L K ++ + F S
Sbjct: 621 YEKEIEE-LKELLPEIR-EKIEDAKESQ---RSGNVAELALKATLVESSTSGFTPSGAGA 675
Query: 387 ILGMASAKAKGDEKSSTSAVLSSSRMGTANSDGDFDSP 424
+ M +++ D SS++ V S + + +SP
Sbjct: 676 SVSMIASRKPTDGASSSNCVTDISHLVRKKRKPEEESP 713
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00013471001 | SubName- Full=Chromosome undetermined scaffold_484, whole genome shotgun sequence; (434 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 479 | |||
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 1e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 2e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-04 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 0.002 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 0.003 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.004 |
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
Score = 48.1 bits (114), Expect = 1e-05
Identities = 45/233 (19%), Positives = 72/233 (30%), Gaps = 23/233 (9%)
Query: 2 AEEEGSQTVAEQTAQ---PTETVGTTQASVEATMESVTVSGTESTCNNNCETSGAIADGE 58
+E ++T E ++ P E G + E + G E E
Sbjct: 668 EQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTE 727
Query: 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYY----QY 114
E +E +E E E++ E + H GE E Q
Sbjct: 728 DEGEIETGEEGEEVEDEGEGEAEGKHEVE--TEGDRKETEHEGETEAEGKEDEDEGEIQA 785
Query: 115 GRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVN--GESSTASVSSSAEQHGSS 172
G K E A+ V + ++ + S A + + T +AE G +
Sbjct: 786 GEDGEMKGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEA 845
Query: 173 NNQDEAADDAVPGD------------NEEDEEGNDGENVAEADEDESDLDLAW 213
++ D D EE+EE + E E +E+E L L W
Sbjct: 846 KQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSLEW 898
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 1096 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 1e-04
Identities = 18/74 (24%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC-LEIGS 290
+ + L L + D + ++ Y+KAL + +PD+ AE + + L L++G
Sbjct: 1 DNAEALKNLGNALFKLGDYDEAIEAYEKALEL-----DPDN---AEAYYNLALAYLKLGK 52
Query: 291 KPQEAIPYCQKAIS 304
+EA+ +KA+
Sbjct: 53 DYEEALEDLEKALE 66
|
Length = 69 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.9 bits (99), Expect = 2e-04
Identities = 61/308 (19%), Positives = 107/308 (34%), Gaps = 35/308 (11%)
Query: 53 AIADGEREKTVEFADELMEKGTNALKE-SDYGEAAECFSRALEIRV-SHYGELALECVNA 110
AI K + A L+E G L+ + EA E ALE+ S L L A
Sbjct: 9 AILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALA 68
Query: 111 YYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHG 170
+ GR L +A E + + + ++ + E G
Sbjct: 69 LLKLGR--LEEALELLEKALELELLPNLAEALLNLGLL-----------------LEALG 109
Query: 171 SSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDS 230
E + A+ + D + + A + D + A ++ + A + +
Sbjct: 110 KYEEALELLEKAL--ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPE----- 162
Query: 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS 290
L+ LAE L + +L Y++AL +LE+ ++ + AE + L
Sbjct: 163 ------LNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG 216
Query: 291 KPQEAIPYCQKAISVCKSRVQRLLNEVKSLGE-SATSSAPAELDDGIQQSSSEFQNDKLL 349
K +EA+ Y +KA+ + + L N L E A L+ ++ + L
Sbjct: 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPDLYNLGLAL 276
Query: 350 TDKEAEIE 357
AE
Sbjct: 277 LLLLAEAL 284
|
Length = 291 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 3e-04
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 235 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI-CLCLEIGSKPQ 293
L+ LA V D + +L +KAL + + D A + L L +G
Sbjct: 6 AALNNLALVLRRLGDYDEALELLEKALELARE-LGEDHPETARALNNLARLYLALG-DYD 63
Query: 294 EAIPYCQKAISVCKS 308
EA+ Y +KA+++ ++
Sbjct: 64 EALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 3e-04
Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 8/74 (10%)
Query: 235 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294
+ L L + + D + +L Y+KAL + +PD+ A+ + + K +E
Sbjct: 1 EALLNLGNLYYKLGDYDEALEYYEKALEL-----DPDN---ADAYYNLAAAYYKLGKYEE 52
Query: 295 AIPYCQKAISVCKS 308
A+ +KA+ +
Sbjct: 53 ALEDYEKALELDPD 66
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 37.4 bits (87), Expect = 0.002
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 235 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294
D LA + E +L DY+KAL + +PD+ A+ + + L K +E
Sbjct: 35 DAYYNLAAAYYKLGKYEEALEDYEKALEL-----DPDN---AKAYYNLGLAYYKLGKYEE 86
Query: 295 AIPYCQKAISVCKS 308
A+ +KA+ + +
Sbjct: 87 ALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.003
Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 8/62 (12%)
Query: 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125
A+ L G K DY EA E + +ALE+ + AYY A L ++
Sbjct: 3 AEALKNLGNALFKLGDYDEAIEAYEKALELDPDN--------AEAYYNLALAYLKLGKDY 54
Query: 126 AD 127
+
Sbjct: 55 EE 56
|
Length = 69 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.004
Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 69 LMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQ-EEA 126
L + DY EA E +ALE+ GE E A R L +EA
Sbjct: 8 LNNLALVLRRLGDYDEALELLEKALELA-RELGEDHPETARALNNLARLYLALGDYDEA 65
|
Length = 78 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| KOG4563 | 400 | consensus Cell cycle-regulated histone H1-binding | 99.91 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.74 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.62 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 99.51 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.4 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.27 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.14 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.14 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.14 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.12 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.09 | |
| KOG4563 | 400 | consensus Cell cycle-regulated histone H1-binding | 99.06 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.05 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.99 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.99 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.98 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 98.91 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.9 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.89 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.88 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.87 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.84 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 98.83 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.83 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.82 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.82 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.82 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 98.81 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.81 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 98.81 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.81 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 98.8 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.79 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.78 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 98.76 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.76 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.75 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 98.74 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.74 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.72 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.71 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 98.7 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.67 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 98.64 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.64 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 98.61 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.6 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.59 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 98.59 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 98.53 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.52 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.51 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.48 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.47 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.46 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.46 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.46 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.42 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 98.39 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.39 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.38 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.37 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.36 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.36 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.33 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.3 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.3 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.29 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.27 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 98.27 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.26 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.25 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.24 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 98.23 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.21 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.16 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 98.1 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.09 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.08 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.07 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 98.04 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.04 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.03 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.03 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.01 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.01 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.0 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.98 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.96 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.95 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.95 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.95 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 97.94 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 97.94 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.89 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 97.87 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 97.85 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.84 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 97.84 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.83 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.82 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.81 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 97.81 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 97.8 | |
| KOG1839 | 1236 | consensus Uncharacterized protein CLU1/cluA/TIF31 | 97.79 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 97.78 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.77 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.75 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 97.71 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.69 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 97.68 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.67 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 97.67 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.66 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 97.64 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.64 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.63 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.62 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 97.62 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.62 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.62 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.61 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 97.59 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 97.58 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 97.53 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 97.52 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 97.49 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.47 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.45 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.43 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.42 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.42 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.41 | |
| PLN02789 | 320 | farnesyltranstransferase | 97.38 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.38 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 97.34 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.33 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.32 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.3 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.28 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.27 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.26 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 97.22 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.22 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.21 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.18 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.07 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 97.06 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 97.04 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.99 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 96.96 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.95 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.93 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.93 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 96.91 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 96.9 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 96.9 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.89 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 96.89 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.8 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 96.76 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 96.73 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 96.71 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.61 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 96.45 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.44 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.42 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 96.41 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.39 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.34 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 96.3 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.3 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.29 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 96.24 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 96.1 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.06 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.06 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.03 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 95.99 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 95.97 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 95.96 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.88 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 95.87 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.83 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.81 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 95.8 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 95.77 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.74 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 95.71 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 95.67 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 95.56 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 95.55 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 95.5 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 95.47 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 95.45 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 95.42 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.34 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.33 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 95.32 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 95.31 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.3 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 95.3 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.18 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.17 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.17 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.11 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 95.06 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.03 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 95.03 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 94.98 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 94.84 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 94.83 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.41 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 94.38 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.29 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 94.15 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 94.15 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 94.03 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 94.02 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 93.88 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 93.88 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 93.82 | |
| cd09034 | 345 | BRO1_Alix_like Protein-interacting Bro1-like domai | 93.79 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.76 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 93.61 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 93.48 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 93.48 | |
| cd02684 | 75 | MIT_2 MIT: domain contained within Microtubule Int | 93.48 | |
| PF10255 | 404 | Paf67: RNA polymerase I-associated factor PAF67; I | 93.36 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.34 | |
| PF04212 | 69 | MIT: MIT (microtubule interacting and transport) d | 93.24 | |
| cd02678 | 75 | MIT_VPS4 MIT: domain contained within Microtubule | 93.08 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 92.99 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 92.96 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.94 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.92 | |
| cd09242 | 348 | BRO1_ScBro1_like Protein-interacting, N-terminal, | 92.75 | |
| cd09241 | 355 | BRO1_ScRim20-like Protein-interacting, N-terminal, | 92.32 | |
| cd02683 | 77 | MIT_1 MIT: domain contained within Microtubule Int | 92.26 | |
| cd02681 | 76 | MIT_calpain7_1 MIT: domain contained within Microt | 92.22 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 92.21 | |
| cd09240 | 346 | BRO1_Alix Protein-interacting, N-terminal, Bro1-li | 92.18 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 91.93 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 91.77 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 91.73 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 91.67 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 91.59 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 91.57 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 91.48 | |
| smart00745 | 77 | MIT Microtubule Interacting and Trafficking molecu | 91.37 | |
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 91.27 | |
| cd02656 | 75 | MIT MIT: domain contained within Microtubule Inter | 91.2 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 91.0 | |
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 90.73 | |
| KOG2561 | 568 | consensus Adaptor protein NUB1, contains UBA domai | 90.71 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 90.43 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 90.39 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 90.35 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.96 | |
| KOG2709 | 560 | consensus Uncharacterized conserved protein [Funct | 89.96 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 89.76 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 89.5 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 89.2 | |
| PF04212 | 69 | MIT: MIT (microtubule interacting and transport) d | 88.43 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 88.38 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 88.33 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.11 | |
| cd02680 | 75 | MIT_calpain7_2 MIT: domain contained within Microt | 88.1 | |
| cd09239 | 361 | BRO1_HD-PTP_like Protein-interacting, N-terminal, | 88.03 | |
| cd09246 | 353 | BRO1_Alix_like_1 Protein-interacting, N-terminal, | 87.69 | |
| cd02677 | 75 | MIT_SNX15 MIT: domain contained within Microtubule | 87.64 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 87.61 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 87.23 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 87.1 | |
| PF03097 | 377 | BRO1: BRO1-like domain; InterPro: IPR004328 The BR | 86.99 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 86.88 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 86.69 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 86.46 | |
| COG1382 | 119 | GimC Prefoldin, chaperonin cofactor [Posttranslati | 86.24 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.01 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 86.01 | |
| PF05278 | 269 | PEARLI-4: Arabidopsis phospholipase-like protein ( | 85.91 | |
| KOG1118 | 366 | consensus Lysophosphatidic acid acyltransferase en | 85.87 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 85.86 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.82 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 85.38 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 85.36 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 85.35 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 85.14 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 84.9 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 84.64 | |
| cd02682 | 75 | MIT_AAA_Arch MIT: domain contained within Microtub | 84.48 | |
| PHA02537 | 230 | M terminase endonuclease subunit; Provisional | 84.29 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 84.23 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 83.93 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 83.74 | |
| cd02679 | 79 | MIT_spastin MIT: domain contained within Microtubu | 83.67 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 83.46 | |
| PF08626 | 1185 | TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC | 83.09 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 82.6 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 82.09 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 82.08 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 81.92 | |
| PF12309 | 371 | KBP_C: KIF-1 binding protein C terminal; InterPro: | 81.42 | |
| cd02683 | 77 | MIT_1 MIT: domain contained within Microtubule Int | 81.31 |
| >KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.7e-24 Score=216.42 Aligned_cols=273 Identities=27% Similarity=0.347 Sum_probs=187.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCc--CCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKE--GDS 139 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~--~e~ 139 (479)
.-.++..|+.+|++++.+++|+.|++.|++|+++..++||+.|.+|+++||+||++||+++++++.||||..... ++.
T Consensus 37 ~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~nale~~~~eE~ 116 (400)
T KOG4563|consen 37 KEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNALETESAEEE 116 (400)
T ss_pred HHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccch
Confidence 345688999999999999999999999999999999999999999999999999999999999999999976321 110
Q ss_pred CC---CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHH
Q 011692 140 QQ---GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKML 216 (479)
Q Consensus 140 ~~---~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~L 216 (479)
.- .+..++... +. -.+++- | .+......+. .|.+..++....+++++.+..+|+.|
T Consensus 117 e~~~s~e~s~e~nn---~~--------e~vee~---r-----~~~a~~~kek--eEae~~ed~~~~e~e~dt~k~~wE~L 175 (400)
T KOG4563|consen 117 EVEKSGELSDEENN---NK--------ETVEEY---R-----YGLALLEKEK--EEAEKTEDKPAAEDEVDTMKLAWEEL 175 (400)
T ss_pred hhccccccchhhhc---cH--------HHHHHH---H-----hhhhhhhhhh--hhcccccCCccccchhhhhhhhhhhh
Confidence 00 000000000 00 000000 0 0000000000 01111122233345668999999999
Q ss_pred HHHHHHHHHhcCC---------------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHH
Q 011692 217 DVARAIAEKHWGD---------------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-HIAELNF 280 (479)
Q Consensus 217 e~Ar~Iyek~~~~---------------~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r-~iAea~~ 280 (479)
+..|+|-.+.... .+.+++.+..+|.-.+..++|++|+.+..++|.|.+-++++.+| .++..+.
T Consensus 176 e~sr~~~~~~~~s~~~~qe~k~~l~~~wdle~~~~l~~~~a~gias~k~eqal~d~ee~~sIs~~~l~~esrk~~a~~~~ 255 (400)
T KOG4563|consen 176 ETSRVIADKKSESLEAEQEGKGDLILGWDLELADVLKLLGAHGIASGKYEQALEDAEEALSISRVDLPEESRKEIAQTVD 255 (400)
T ss_pred hhhccccchhhhccccccccccchhhhhccccchhhhccCCccccccchhhhhHHHHHHhhhhhccccHHHHHHHhhhhh
Confidence 9999987554221 13345666666666668899999999999999999999999999 7999999
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHH
Q 011692 281 RICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLS 360 (479)
Q Consensus 281 ~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk 360 (479)
.|+........+++...+| ..++..|-.++++++.....+. |. .-.....+.++++|+
T Consensus 256 il~~~~~~s~~~Ee~~~~~----~~~KnvLi~~e~Ev~~~~~k~~-------d~-----------~~~es~~~~~~~ele 313 (400)
T KOG4563|consen 256 ILCSAAESSLEREEIESSF----SDTKNVLIEREREVKDDLEKGV-------DD-----------NFRESECLSELKELE 313 (400)
T ss_pred hccccccchhHHHHHHHHH----HHhhhHHHHHHHhhcccccccc-------cc-----------cccchhHHHhhhhHH
Confidence 9999887776666665555 4555555555665554432110 10 113467889999999
Q ss_pred hhHHHHHHHHHHHHHhh
Q 011692 361 GLCGDLEKKLEDLQQVA 377 (479)
Q Consensus 361 ~ll~dl~~KieDlk~~~ 377 (479)
++||.|+++|-|++..+
T Consensus 314 e~ip~leq~i~d~k~~A 330 (400)
T KOG4563|consen 314 EMIPELEQAILDAKASA 330 (400)
T ss_pred hHHHHHHHHHHHhccch
Confidence 99999999999998753
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.2e-17 Score=173.46 Aligned_cols=164 Identities=22% Similarity=0.154 Sum_probs=150.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCC
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~ 142 (479)
+..+.-+...|..|..+++|.+|+.+|.+||.|+.+.||++||.+|.+|++++.+|+..
T Consensus 238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~--------------------- 296 (508)
T KOG1840|consen 238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQ--------------------- 296 (508)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcc---------------------
Confidence 34466666799999999999999999999999999999999999999999999999653
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
++|..|...++.|+.|
T Consensus 297 ----------------------------------------------------------------GKf~EA~~~~e~Al~I 312 (508)
T KOG1840|consen 297 ----------------------------------------------------------------GKFAEAEEYCERALEI 312 (508)
T ss_pred ----------------------------------------------------------------CChHHHHHHHHHHHHH
Confidence 5678899999999999
Q ss_pred HHHhcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 223 AEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 223 yek~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
+++.++ .+++++..+.+++.++..+++|++|+..|+++|+|....+|++|+.+|.++.|||.+|.++|+|++|.++|++
T Consensus 313 ~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 313 YEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 999655 4688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 011692 302 AISVCKSRVQ 311 (479)
Q Consensus 302 AL~I~k~rl~ 311 (479)
||.+.+...+
T Consensus 393 ai~~~~~~~~ 402 (508)
T KOG1840|consen 393 AIQILRELLG 402 (508)
T ss_pred HHHHHHhccc
Confidence 9999865443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-14 Score=153.74 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
...+..+|..+..+|+|+.|+..|.+|++++.+.+|-.||.++....+||.+|..+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~------------------------ 254 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL------------------------ 254 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh------------------------
Confidence 55666799999999999999999999999999999999999999999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+.|..|..+|+.|+.|++.
T Consensus 255 -------------------------------------------------------------~k~~eAv~ly~~AL~i~e~ 273 (508)
T KOG1840|consen 255 -------------------------------------------------------------GKYDEAVNLYEEALTIREE 273 (508)
T ss_pred -------------------------------------------------------------ccHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999
Q ss_pred hcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 226 HWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 226 ~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
..+ .++.+|.+|++||..|..+|+|++|..+|++|++|++++++..|+.++..|.+++.++...++|++|+.+|+++++
T Consensus 274 ~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~ 353 (508)
T KOG1840|consen 274 VFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALK 353 (508)
T ss_pred hcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 887 5799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 011692 305 VCKSR 309 (479)
Q Consensus 305 I~k~r 309 (479)
|++..
T Consensus 354 i~~~~ 358 (508)
T KOG1840|consen 354 IYLDA 358 (508)
T ss_pred HHHhh
Confidence 98843
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.8e-14 Score=112.81 Aligned_cols=78 Identities=26% Similarity=0.298 Sum_probs=72.8
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 230 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 230 ~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
|+.++.+|++||.+|..+|+|++|+.+|++||.| .+.+|++|+.++.++++||.+|..+|++++|+.+|++|++|+++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 4678999999999999999999999999999999 77789999999999999999999999999999999999999874
|
... |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=7e-13 Score=142.07 Aligned_cols=56 Identities=14% Similarity=0.126 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP 128 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv 128 (479)
.|..+.++|..+..+|+.-.|+.+|.+|+.| .|-..++|+++|.+|-+..+.+..|
T Consensus 217 fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 217 FAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred eeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHH
Confidence 4777888888888888888888888888887 7888888888888888877665543
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.27 E-value=4.8e-11 Score=128.25 Aligned_cols=167 Identities=20% Similarity=0.222 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC-cCCCCCCCcCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD-PLVSVPKKEGDSQQGS 143 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esd-vLG~~~~~~~e~~~~~ 143 (479)
.-+.+.++|.++-..|+..+|++||.+||.+ .|-.|++.+++|.++.+.+..+.. +|....
T Consensus 319 F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--------~p~hadam~NLgni~~E~~~~e~A~~ly~~a---------- 380 (966)
T KOG4626|consen 319 FPDAYNNLANALKDKGSVTEAVDCYNKALRL--------CPNHADAMNNLGNIYREQGKIEEATRLYLKA---------- 380 (966)
T ss_pred chHHHhHHHHHHHhccchHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHhccchHHHHHHHHH----------
Confidence 3677888888888889999999999999988 677888999999988887544222 111000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
-..+++.+. + . -+.+.--...++|+.|...|..|+.|
T Consensus 381 -------l~v~p~~aa---------a-----~---------------------nNLa~i~kqqgnl~~Ai~~YkealrI- 417 (966)
T KOG4626|consen 381 -------LEVFPEFAA---------A-----H---------------------NNLASIYKQQGNLDDAIMCYKEALRI- 417 (966)
T ss_pred -------HhhChhhhh---------h-----h---------------------hhHHHHHHhcccHHHHHHHHHHHHhc-
Confidence 000111110 0 0 01111122347788888888887766
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.|..|++|.++|.+|-++|+.+.|+.+|.+|+.|. |..|++|.|||.+|...|+..+||..|+.||
T Consensus 418 ------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--------Pt~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 418 ------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--------PTFAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred ------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--------cHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 56789999999999999999999999999999885 5569999999999999999999999999999
Q ss_pred HHH
Q 011692 304 SVC 306 (479)
Q Consensus 304 ~I~ 306 (479)
.+.
T Consensus 484 klk 486 (966)
T KOG4626|consen 484 KLK 486 (966)
T ss_pred ccC
Confidence 764
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.4e-09 Score=98.88 Aligned_cols=168 Identities=15% Similarity=0.085 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQ 141 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~ 141 (479)
..+..++.+|..++..|+|++|+.+|.+++++ +|..+.+++.+|.+++..++.+... +......
T Consensus 29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~------ 94 (234)
T TIGR02521 29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL------ 94 (234)
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------
Confidence 34788899999999999999999999999886 6888899999999998874432110 0000000
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
.+... . .. -..+...-..++++.|..+++.+..
T Consensus 95 ------------~~~~~-----------------~-~~-----------------~~~~~~~~~~g~~~~A~~~~~~~~~ 127 (234)
T TIGR02521 95 ------------NPNNG-----------------D-VL-----------------NNYGTFLCQQGKYEQAMQQFEQAIE 127 (234)
T ss_pred ------------CCCCH-----------------H-HH-----------------HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 00000 0 00 0000000112345555555544442
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
.. ........+.++|.++...|+|++|+..|.+++.+.. ++ ..+++.+|.+|...+++++|+.+|++
T Consensus 128 ~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~---~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 128 DP-----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-----QR---PESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred cc-----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----CC---hHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 11 1223455667777777777777777777777766521 22 45667777777777777777777777
Q ss_pred HHHH
Q 011692 302 AISV 305 (479)
Q Consensus 302 AL~I 305 (479)
++.+
T Consensus 195 ~~~~ 198 (234)
T TIGR02521 195 YQQT 198 (234)
T ss_pred HHHh
Confidence 6654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.14 E-value=6.4e-10 Score=122.70 Aligned_cols=167 Identities=16% Similarity=0.078 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQG 142 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~ 142 (479)
.+..+..+|..++.+|+|++|+.+|.+++++ +|.+..+|+.+|.+++.+++.+... |-.+..
T Consensus 330 ~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~-------- 393 (615)
T TIGR00990 330 EAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALK-------- 393 (615)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence 3556788899999999999999999999987 6888899999999998875543211 000000
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
.++... .. .. ..+...-..++++.|...|+.++.+
T Consensus 394 ----------~~p~~~------~~--------~~---------------------~lg~~~~~~g~~~~A~~~~~kal~l 428 (615)
T TIGR00990 394 ----------LNSEDP------DI--------YY---------------------HRAQLHFIKGEFAQAGKDYQKSIDL 428 (615)
T ss_pred ----------hCCCCH------HH--------HH---------------------HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 000000 00 00 0000001124566666555555543
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
.+....+|..||.++..+|+|++|+..|++++.+. |..+.+|+.+|.+|..+|+|++|+.+|++|
T Consensus 429 -------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 429 -------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--------PEAPDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred -------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 45567789999999999999999999999999764 233678999999999999999999999999
Q ss_pred HHHHH
Q 011692 303 ISVCK 307 (479)
Q Consensus 303 L~I~k 307 (479)
+.+..
T Consensus 494 l~l~p 498 (615)
T TIGR00990 494 IELEK 498 (615)
T ss_pred HhcCC
Confidence 98865
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-09 Score=108.93 Aligned_cols=173 Identities=17% Similarity=0.032 Sum_probs=107.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCC--CCCCCcCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQG 142 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG--~~~~~~~e~~~~ 142 (479)
.+..++.+|..+...|++++|+..|.+|+++ .|..+.+|+++|.+++..++.+..+-- .+..
T Consensus 63 ~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~-------- 126 (296)
T PRK11189 63 RAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE-------- 126 (296)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence 4677999999999999999999999999998 799999999999999998665432110 0000
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
.++... .. .. ..+...-..+.++.|.+.|+.++.+
T Consensus 127 ----------l~P~~~---------~a-----~~---------------------~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 127 ----------LDPTYN---------YA-----YL---------------------NRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred ----------hCCCCH---------HH-----HH---------------------HHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 000000 00 00 0000001235677777777766654
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----------HhcCC---------------C----Ch
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE----------RMVEP---------------D----SR 273 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~----------~llg~---------------d----~r 273 (479)
. +.+ + ....| ..+....+++++|+..|.+++.... -.++. . .+
T Consensus 162 ~---P~~-~-~~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~ 233 (296)
T PRK11189 162 D---PND-P-YRALW---LYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAE 233 (296)
T ss_pred C---CCC-H-HHHHH---HHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHH
Confidence 2 211 1 01111 1233445677777777766543210 00111 1 23
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
..+++||+||.+|..+|++++|+.+|++|+++-
T Consensus 234 ~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 234 RLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 456899999999999999999999999999875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.8e-09 Score=116.64 Aligned_cols=177 Identities=13% Similarity=0.145 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCC--CCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG--~~~~~~~e~~~~~ 143 (479)
...+..+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+++.+++.+..+-- ...+.
T Consensus 399 ~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-------- 462 (615)
T TIGR00990 399 PDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-------- 462 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 678999999999999999999999999998 788999999999999988765432110 00000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
.+... .. .. ..+..--..++++.|.+.|+.|+.+.
T Consensus 463 ----------~P~~~------~~--------~~---------------------~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 463 ----------FPEAP------DV--------YN---------------------YYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred ----------CCCCh------HH--------HH---------------------HHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 00000 00 00 00001123468889999999988775
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.+.......+...+...+.++...++|++|+..|+++|.+. +++ ..++..||.+|..+|++++|+.+|++|+
T Consensus 498 p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-----p~~---~~a~~~la~~~~~~g~~~eAi~~~e~A~ 569 (615)
T TIGR00990 498 KETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-----PEC---DIAVATMAQLLLQQGDVDEALKLFERAA 569 (615)
T ss_pred CccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----CCc---HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 44322223344445555555666899999999999999873 233 3578999999999999999999999999
Q ss_pred HHHHHHHH
Q 011692 304 SVCKSRVQ 311 (479)
Q Consensus 304 ~I~k~rl~ 311 (479)
++.+...+
T Consensus 570 ~l~~~~~e 577 (615)
T TIGR00990 570 ELARTEGE 577 (615)
T ss_pred HHhccHHH
Confidence 98765433
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.09 E-value=5e-09 Score=105.22 Aligned_cols=149 Identities=22% Similarity=0.204 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+...|+.+...|+|++|.++|.+|.+++.. .|. ....|..|..-+.++..
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~-~~~-~~~Aa~~~~~Aa~~~k~------------------------- 87 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEK-LGD-KFEAAKAYEEAANCYKK------------------------- 87 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHH-------------------------
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHh-------------------------
Confidence 445555567777789999999999999998877 443 34566777776666533
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.+++.|.++|+.|..+|.+
T Consensus 88 -------------------------------------------------------------~~~~~Ai~~~~~A~~~y~~ 106 (282)
T PF14938_consen 88 -------------------------------------------------------------GDPDEAIECYEKAIEIYRE 106 (282)
T ss_dssp -------------------------------------------------------------TTHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------hCHHHHHHHHHHHHHHHHh
Confidence 2566789999999999987
Q ss_pred hcCCcchHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALER-EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~-g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.. .....|.++..||.+|... ++|++|+.+|++|+.+.+..- .......++.+++.++...++|++|+..|++.+.
T Consensus 107 ~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 107 AG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp CT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 64 3456799999999999999 999999999999999998764 4566889999999999999999999999998765
Q ss_pred H
Q 011692 305 V 305 (479)
Q Consensus 305 I 305 (479)
.
T Consensus 184 ~ 184 (282)
T PF14938_consen 184 K 184 (282)
T ss_dssp T
T ss_pred H
Confidence 4
|
|
| >KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.7e-11 Score=122.64 Aligned_cols=307 Identities=28% Similarity=0.281 Sum_probs=218.0
Q ss_pred Cccccc-------chhhhhcccCCC-ccccccccc-eeeeeeeeccccccccccCCCCC-------CCCccCCch-hhhH
Q 011692 1 MAEEEG-------SQTVAEQTAQPT-ETVGTTQAS-VEATMESVTVSGTESTCNNNCET-------SGAIADGER-EKTV 63 (479)
Q Consensus 1 ~~~~~~-------~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~l 63 (479)
|+|+++ +||++++...++ +|..++..| ++.|++...++|+...|+|+.+. ++..++..- .+++
T Consensus 1 ~~e~sataa~as~vktl~~~~de~A~~Ts~~n~~s~~~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~ 80 (400)
T KOG4563|consen 1 MVEESATAAEASDVKTLTEPEDEKATGTSTENLESQKEKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHL 80 (400)
T ss_pred CCccchhhhhhhhhhhccccccCcCCCCCCccchhhHHHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 788877 889999988887 899999888 99999999999999999998773 334444444 5688
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHH----HHHHHHHhhCCCChhHHH-----HHHHHHHHHHhhhhccCCcCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSR----ALEIRVSHYGELALECVN-----AYYQYGRALLYKAQEEADPLVSVPK 134 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~----Alei~~~~~Ge~~pe~A~-----~y~~YG~ALl~~ar~esdvLG~~~~ 134 (479)
+....|+-.|+.++..++++.++.++.. +.+..+.++|+...++-. -||+||.+++..++.+....|+.|.
T Consensus 81 e~~eal~~YGkslLela~~e~~VL~nale~~~~eE~e~~~s~e~s~e~nn~~e~vee~r~~~a~~~kekeEae~~ed~~~ 160 (400)
T KOG4563|consen 81 ETFEALFLYGKSLLELAKEESQVLGNALETESAEEEEVEKSGELSDEENNNKETVEEYRYGLALLEKEKEEAEKTEDKPA 160 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccccccccchhhccccccchhhhccHHHHHHHHhhhhhhhhhhhhcccccCCcc
Confidence 9999999999999999999999999999 999999999998887776 9999999999999999988888776
Q ss_pred CcCCCCCCCCCcccccccc-CCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCcccc-----ccccCcCh
Q 011692 135 KEGDSQQGSDKDDSVKNAV-NGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVA-----EADEDESD 208 (479)
Q Consensus 135 ~~~e~~~~~~~de~~~~~~-~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~-----~~~ed~~d 208 (479)
.+.+.++.....+...... ...... .+....+.++. +.....+.+..+.-... ...+....
T Consensus 161 ~e~e~dt~k~~wE~Le~sr~~~~~~~--~s~~~~qe~k~-----------~l~~~wdle~~~~l~~~~a~gias~k~eqa 227 (400)
T KOG4563|consen 161 AEDEVDTMKLAWEELETSRVIADKKS--ESLEAEQEGKG-----------DLILGWDLELADVLKLLGAHGIASGKYEQA 227 (400)
T ss_pred ccchhhhhhhhhhhhhhhccccchhh--hcccccccccc-----------chhhhhccccchhhhccCCccccccchhhh
Confidence 5433222221111111100 000000 00000000000 00000011111110000 11233456
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH---HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 011692 209 LDLAWKMLDVARAIAEKHWGDSMEKVDILSALA---EVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 285 (479)
Q Consensus 209 le~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LG---ev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 285 (479)
|..+|++|.++|++..... +..++..+.+|+ ......++...+..+|+-.|-+++..+.++.+..++..+..+.|
T Consensus 228 l~d~ee~~sIs~~~l~~es--rk~~a~~~~il~~~~~~s~~~Ee~~~~~~~~KnvLi~~e~Ev~~~~~k~~d~~~~es~~ 305 (400)
T KOG4563|consen 228 LEDAEEALSISRVDLPEES--RKEIAQTVDILCSAAESSLEREEIESSFSDTKNVLIEREREVKDDLEKGVDDNFRESEC 305 (400)
T ss_pred hHHHHHHhhhhhccccHHH--HHHHhhhhhhccccccchhHHHHHHHHHHHhhhHHHHHHHhhcccccccccccccchhH
Confidence 6666777777666654432 213565555554 45566677777888999999999999999999999999999999
Q ss_pred HHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 011692 286 LEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGE 322 (479)
Q Consensus 286 y~~~g~~eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~ 322 (479)
..-....+++|.+++++|-.++.+..+|.+.++....
T Consensus 306 ~~~~~elee~ip~leq~i~d~k~~Ae~~ee~~~~aa~ 342 (400)
T KOG4563|consen 306 LSELKELEEMIPELEQAILDAKASAEQLEEEIKKAAG 342 (400)
T ss_pred HHhhhhHHhHHHHHHHHHHHhccchhhhhHHHHhhhh
Confidence 9999999999999999999999999999998876654
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.05 E-value=7.6e-09 Score=95.49 Aligned_cols=166 Identities=16% Similarity=0.097 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
+..+..+|..++.+|+|++|+.+|.+++++ +|....+++++|.+++..++.+... +-.....
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-------- 128 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTL--------NPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED-------- 128 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------
Confidence 456778999999999999999999999987 5667789999999999876543210 0000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
+ ... . ....- -..+...-..++++.|...|+.++.+
T Consensus 129 ----~-------~~~------~---------~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~~- 164 (234)
T TIGR02521 129 ----P-------LYP------Q---------PARSL-----------------ENAGLCALKAGDFDKAEKYLTRALQI- 164 (234)
T ss_pred ----c-------ccc------c---------chHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 0 000 0 00000 00000011235667777766666543
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.+.....+..||.++...|+|++|+..|++++.+. +.+ ...++.++.++...|++++|..+++...
T Consensus 165 ------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 165 ------DPQRPESLLELAELYYLRGQYKDARAYLERYQQTY-----NQT---AESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred ------CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 23456789999999999999999999999999872 222 4566788999999999999998887665
Q ss_pred HH
Q 011692 304 SV 305 (479)
Q Consensus 304 ~I 305 (479)
.+
T Consensus 231 ~~ 232 (234)
T TIGR02521 231 KL 232 (234)
T ss_pred hh
Confidence 43
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=110.70 Aligned_cols=98 Identities=16% Similarity=0.214 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+||+.|....+.-+.|-....+ ....-.+|.+||..+.-.|+|+.|+++|++.|.+..++- +-..-|...|.||.+|
T Consensus 209 Gdf~~ai~~H~~RL~ia~efGD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg--~r~vEAQscYSLgNty 285 (639)
T KOG1130|consen 209 GDFDQAIHFHKLRLEIAQEFGD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELG--NRTVEAQSCYSLGNTY 285 (639)
T ss_pred ccHHHHHHHHHHHHHHHHHhhh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhc--chhHHHHHHHHhhhHH
Confidence 5677777776666666555532 222346788888888888888888888888888888774 2333577888888888
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
.....|++||.|+++-|.|-+
T Consensus 286 tll~e~~kAI~Yh~rHLaIAq 306 (639)
T KOG1130|consen 286 TLLKEVQKAITYHQRHLAIAQ 306 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888887764
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.1e-09 Score=85.52 Aligned_cols=60 Identities=32% Similarity=0.363 Sum_probs=52.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 266 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ 266 (479)
++++.|.++|+.|+.++......++.++.++.+||.++..+|+|++|+.+|++|++|+++
T Consensus 19 ~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 19 GRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp T-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 578899999999999955554456778999999999999999999999999999999875
|
... |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-09 Score=95.28 Aligned_cols=84 Identities=20% Similarity=0.128 Sum_probs=71.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|+.+|+.++.+ .+...++|+.||.++...|+|++|+..|++++.+... -+.+|+++|.||
T Consensus 38 g~~~~A~~~~~~al~~-------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~--------~~~a~~~lg~~l 102 (144)
T PRK15359 38 GDYSRAVIDFSWLVMA-------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS--------HPEPVYQTGVCL 102 (144)
T ss_pred CCHHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHH
Confidence 4566677777766543 4567899999999999999999999999999987432 369999999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
...|++++|+.+|++||.+
T Consensus 103 ~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 103 KMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999976
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-09 Score=111.00 Aligned_cols=172 Identities=16% Similarity=0.111 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
+|+.--++|+.+-..|.|++|+-|..+-|.+.+++ |+. .--+.+||++|.+|..+|+. +|-...
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL-gDr-v~e~RAlYNlgnvYhakGk~----~g~~~p---------- 157 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL-GDR-VLESRALYNLGNVYHAKGKC----TGLEAP---------- 157 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHH-hHH-HhhhHHHhhhhhhhhhcccc----cCCCCh----------
Confidence 45666678889999999999999999999987664 432 23467899999999988654 221000
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++. + +-.+|.-++|+.|.++|..-+.+.+
T Consensus 158 ------------------------------ee~------g---------------~f~~ev~~al~~Av~fy~eNL~l~~ 186 (639)
T KOG1130|consen 158 ------------------------------EEK------G---------------AFNAEVTSALENAVKFYMENLELSE 186 (639)
T ss_pred ------------------------------hhc------c---------------cccHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 0001233688889888888887776
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
+.. +..-...+|-+||..|.-+|+|++||.+++.=|.|.+++-..- ..=.+|-|||.||.+.|+|+.|++||.+++.
T Consensus 187 ~lg-Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrA--aeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 187 KLG-DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRA--AERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred Hhh-hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHH--HHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 653 3455678999999999999999999999999999999875322 2336899999999999999999999998776
Q ss_pred HH
Q 011692 305 VC 306 (479)
Q Consensus 305 I~ 306 (479)
+-
T Consensus 264 LA 265 (639)
T KOG1130|consen 264 LA 265 (639)
T ss_pred HH
Confidence 53
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.3e-08 Score=91.19 Aligned_cols=125 Identities=16% Similarity=0.079 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..++..|..++.+|+|++|+.+|.+|+.+. +.++..+.+|+++|.++..+
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~---------------------- 85 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSN---------------------- 85 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHc----------------------
Confidence 468889999999999999999999999999983 33556788999999999875
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|+..++.|+.+.
T Consensus 86 ---------------------------------------------------------------g~~~eA~~~~~~Al~~~ 102 (168)
T CHL00033 86 ---------------------------------------------------------------GEHTKALEYYFQALERN 102 (168)
T ss_pred ---------------------------------------------------------------CCHHHHHHHHHHHHHhC
Confidence 45677888898888774
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAEL 278 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea 278 (479)
.........++.+|.++|.++...|+|..|+.+|.+++.+.++.++.++...-.+
T Consensus 103 ~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~ 157 (168)
T CHL00033 103 PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEA 157 (168)
T ss_pred cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHH
Confidence 3333223456677777777777999999999999999999999988887544333
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-08 Score=95.44 Aligned_cols=142 Identities=18% Similarity=0.188 Sum_probs=116.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
..+.+...+.+|--++.+||+..|..-+.+||++ .|....++.-.+-.+..+
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~-------------------- 82 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKL-------------------- 82 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHc--------------------
Confidence 3455888999999999999999999999999998 787766665554444332
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
+..+.|.+.|++|+.
T Consensus 83 -----------------------------------------------------------------Ge~~~A~e~YrkAls 97 (250)
T COG3063 83 -----------------------------------------------------------------GENDLADESYRKALS 97 (250)
T ss_pred -----------------------------------------------------------------CChhhHHHHHHHHHh
Confidence 233456666666664
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
+ +++-+++++|-|...|.+|+|++|...|++|+. .|.-+..+.++-|+|+|-..+|+++.|..+|++
T Consensus 98 l-------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~------~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 98 L-------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALA------DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred c-------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHh------CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 4 567899999999999999999999999999875 356667789999999999999999999999999
Q ss_pred HHHHHHHH
Q 011692 302 AISVCKSR 309 (479)
Q Consensus 302 AL~I~k~r 309 (479)
+|++....
T Consensus 165 aL~~dp~~ 172 (250)
T COG3063 165 ALELDPQF 172 (250)
T ss_pred HHHhCcCC
Confidence 99886543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-08 Score=101.70 Aligned_cols=105 Identities=22% Similarity=0.261 Sum_probs=86.9
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCC
Q 011692 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQ 140 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~ 140 (479)
.....|..|..+|..+++.++|.+|+++|.+|+++ .|..|-.|-+-+-||.++
T Consensus 76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~L------------------- 128 (304)
T KOG0553|consen 76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKL------------------- 128 (304)
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHh-------------------
Confidence 45677999999999999999999999999999998 788888888888888776
Q ss_pred CCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHH
Q 011692 141 QGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVAR 220 (479)
Q Consensus 141 ~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar 220 (479)
+.|+.||+-++.|+
T Consensus 129 ------------------------------------------------------------------g~~~~AVkDce~Al 142 (304)
T KOG0553|consen 129 ------------------------------------------------------------------GEYEDAVKDCESAL 142 (304)
T ss_pred ------------------------------------------------------------------cchHHHHHHHHHHH
Confidence 23556777777777
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 221 AIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 221 ~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
.| .+....+|.+||.+|+.+|+|..|+..|++||+|..
T Consensus 143 ~i-------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP 180 (304)
T KOG0553|consen 143 SI-------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDP 180 (304)
T ss_pred hc-------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCC
Confidence 65 345677888888888888888888888888888743
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.8e-08 Score=115.45 Aligned_cols=161 Identities=15% Similarity=0.069 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcC--CCCCCCcCCCCCCCCC
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPL--VSVPKKEGDSQQGSDK 145 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvL--G~~~~~~~e~~~~~~~ 145 (479)
.++.+|..++..|++++|+.+|.+++.+ +|.....++.++..++..++.+..+- -.+..
T Consensus 544 a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~----------- 604 (987)
T PRK09782 544 DLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLN----------- 604 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----------
Confidence 3678888899999999999999999876 46666666666666655444322100 00000
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.++ .. .. .. +.+......++++.|...|+.|+.+
T Consensus 605 -------l~P---------~~-~a-----~~---------------------~LA~~l~~lG~~deA~~~l~~AL~l--- 638 (987)
T PRK09782 605 -------IAP---------SA-NA-----YV---------------------ARATIYRQRHNVPAAVSDLRAALEL--- 638 (987)
T ss_pred -------hCC---------CH-HH-----HH---------------------HHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 000 00 00 00 0000001124555555555555443
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.|..+.+|++||.++...|+|++|+..|+++|++.. ++ +.++++||.+|..+|++++|+.+|++||.+
T Consensus 639 ----~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-----~~---~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 639 ----EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-----DD---PALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred ----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 456778999999999999999999999999999743 23 589999999999999999999999999965
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.1e-08 Score=106.81 Aligned_cols=85 Identities=9% Similarity=0.009 Sum_probs=57.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|...|+.|+.+ .+....++..++.+++..|+|++|+..|++++... ++++ +..|++||.+|
T Consensus 386 G~~~eAi~~~~~Al~l-------~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~----~p~~---~~~~~~la~~l 451 (553)
T PRK12370 386 GQLEEALQTINECLKL-------DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH----LQDN---PILLSMQVMFL 451 (553)
T ss_pred CCHHHHHHHHHHHHhc-------CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc----cccC---HHHHHHHHHHH
Confidence 3455666666666554 22233455556667777888888888888876542 1222 45788888998
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
..+|++++|+.+|++.+..
T Consensus 452 ~~~G~~~eA~~~~~~~~~~ 470 (553)
T PRK12370 452 SLKGKHELARKLTKEISTQ 470 (553)
T ss_pred HhCCCHHHHHHHHHHhhhc
Confidence 8899999998888775543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=6e-08 Score=108.45 Aligned_cols=161 Identities=13% Similarity=0.011 Sum_probs=115.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC------cCCCCCCCcCCCCCCC
Q 011692 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD------PLVSVPKKEGDSQQGS 143 (479)
Q Consensus 70 ~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esd------vLG~~~~~~~e~~~~~ 143 (479)
...|..++..|+|++|+..|.+++++ +|....+++++|.+|+..++.+.. .+-.+..
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--------- 278 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--------- 278 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh---------
Confidence 45678889999999999999999997 688899999999999998765421 0000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
..+... .. .. ..+..--..++++.|+..|+.++.+
T Consensus 279 ---------l~P~~~---------~a-----~~---------------------~lg~~l~~~g~~~eA~~~l~~al~l- 313 (656)
T PRK15174 279 ---------FNSDNV---------RI-----VT---------------------LYADALIRTGQNEKAIPLLQQSLAT- 313 (656)
T ss_pred ---------hCCCCH---------HH-----HH---------------------HHHHHHHHCCCHHHHHHHHHHHHHh-
Confidence 000000 00 00 0000011235677777777776654
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.+....++..||.++...|+|++|+..|++++... ++ .+..++.+|.+|...|++++|+.+|++++
T Consensus 314 ------~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-----P~---~~~~~~~~a~al~~~G~~deA~~~l~~al 379 (656)
T PRK15174 314 ------HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-----GV---TSKWNRYAAAALLQAGKTSEAESVFEHYI 379 (656)
T ss_pred ------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----cc---chHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34567889999999999999999999999998863 22 24567788999999999999999999999
Q ss_pred HHH
Q 011692 304 SVC 306 (479)
Q Consensus 304 ~I~ 306 (479)
.+.
T Consensus 380 ~~~ 382 (656)
T PRK15174 380 QAR 382 (656)
T ss_pred HhC
Confidence 884
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=7.6e-08 Score=105.43 Aligned_cols=48 Identities=15% Similarity=0.293 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhh
Q 011692 68 ELMEKGTNALKE---SDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQ 123 (479)
Q Consensus 68 ~L~~~G~~~~~~---gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar 123 (479)
.+.-+|..++.. +++.+|+.+|.+|+++ .|..+.+|..+|.+++.+++
T Consensus 260 ~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~ 310 (553)
T PRK12370 260 MVYLRGKHELNQYTPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQ 310 (553)
T ss_pred HHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHH
Confidence 455667655443 4678999999999998 89999999999999887743
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.6e-08 Score=79.23 Aligned_cols=65 Identities=20% Similarity=0.282 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS-KPQEAIPYCQKAISV 305 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g-~~eeAi~~~ekAL~I 305 (479)
.|.+|..+|.+++..++|++|+.+|+++|++. |.-+.+|+++|.||..++ ++.+|+.+|++||++
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~--------p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD--------PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS--------TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 47899999999999999999999999999984 334689999999999999 799999999999976
|
... |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.4e-09 Score=112.94 Aligned_cols=85 Identities=19% Similarity=0.159 Sum_probs=63.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.|.+.|.+++++|.++ .+..+.+|..||-=+..++.||.|..+|++||.+..++| .++|.||++|
T Consensus 435 kdh~~Aik~f~RAiQl-------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhY--------nAwYGlG~vy 499 (638)
T KOG1126|consen 435 KDHDTAIKCFKRAIQL-------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHY--------NAWYGLGTVY 499 (638)
T ss_pred hHHHHHHHHHHHhhcc-------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhh--------HHHHhhhhhe
Confidence 3455555555554433 456777888888888888888888888888888877776 7888888888
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
.++++++.|.-||++|+.|-
T Consensus 500 ~Kqek~e~Ae~~fqkA~~IN 519 (638)
T KOG1126|consen 500 LKQEKLEFAEFHFQKAVEIN 519 (638)
T ss_pred eccchhhHHHHHHHhhhcCC
Confidence 88888888888888887763
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.2e-08 Score=89.15 Aligned_cols=113 Identities=12% Similarity=0.008 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcc
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de 147 (479)
.+..+|..++..|+|++|+.+|.+++.+ .|....+|+.+|.+|...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~-------------------------- 71 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMML-------------------------- 71 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHH--------------------------
Confidence 4677899999999999999999999998 899999999999999876
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011692 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 227 (479)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~ 227 (479)
++++.|...|+.|..+
T Consensus 72 -----------------------------------------------------------g~~~~A~~~y~~Al~l----- 87 (144)
T PRK15359 72 -----------------------------------------------------------KEYTTAINFYGHALML----- 87 (144)
T ss_pred -----------------------------------------------------------hhHHHHHHHHHHHHhc-----
Confidence 3456677777776643
Q ss_pred CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 228 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 228 ~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
.+..+..|++||.++..+|++++|+..|+++|.+.... +..+.++|.+...
T Consensus 88 --~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~--------~~~~~~~~~~~~~ 138 (144)
T PRK15359 88 --DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYAD--------ASWSEIRQNAQIM 138 (144)
T ss_pred --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHH
Confidence 45678999999999999999999999999999986443 4666777766543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.9e-08 Score=93.01 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=99.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCCCCC
Q 011692 79 ESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESS 158 (479)
Q Consensus 79 ~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~e~a 158 (479)
.+++++++..|.+++.. +|..++.|+.+|++|+..
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~------------------------------------- 86 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWR------------------------------------- 86 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHC-------------------------------------
Confidence 56778888888888887 899999999999999864
Q ss_pred cccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q 011692 159 TASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILS 238 (479)
Q Consensus 159 ~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~ 238 (479)
++++.|...|+.|+.+ .++.+++|.
T Consensus 87 ------------------------------------------------g~~~~A~~a~~~Al~l-------~P~~~~~~~ 111 (198)
T PRK10370 87 ------------------------------------------------NDYDNALLAYRQALQL-------RGENAELYA 111 (198)
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHh-------CCCCHHHHH
Confidence 4566777777777654 345688999
Q ss_pred HHHHHH-HhcCC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 239 ALAEVA-LERED--IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 239 ~LGev~-le~g~--yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+|.++ ...|+ +++|+..|+++|++.... ..++++||.++...|+|++|+.+|++++++
T Consensus 112 ~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~--------~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 112 ALATVLYYQAGQHMTPQTREMIDKALALDANE--------VTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC--------hhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 999974 77788 599999999999986544 489999999999999999999999999865
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2e-07 Score=95.77 Aligned_cols=54 Identities=13% Similarity=0.094 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHhhhhc
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELA-LECVNAYYQYGRALLYKAQE 124 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~-pe~A~~y~~YG~ALl~~ar~ 124 (479)
...++.+|..++.+|+|++|+.+|.+++.. +... .....+|+.+|.+|+..++.
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-----~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 69 VELHLALGNLFRRRGEVDRAIRIHQNLLSR-----PDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 456677888888888888888888888762 2221 23446777888888776544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.8e-08 Score=107.26 Aligned_cols=134 Identities=7% Similarity=-0.076 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|......|+|++|..+|.++|++ .|+...++++|+.+|.++
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~------------------------ 133 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQ------------------------ 133 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHh------------------------
Confidence 666777888888889999999999999988 788999999999998875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
..++.|... +++
T Consensus 134 -------------------------------------------------------------~~~eeA~~~-------~~~ 145 (694)
T PRK15179 134 -------------------------------------------------------------QGIEAGRAE-------IEL 145 (694)
T ss_pred -------------------------------------------------------------ccHHHHHHH-------HHH
Confidence 234444433 333
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+...++.+..|+.+|.++.++|+|++|+..|+++|.- ++.-+.++.++|.+|...|+.++|...|++|++.
T Consensus 146 ~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~--------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 146 YFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQ--------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33445678999999999999999999999999999871 2334689999999999999999999999999987
Q ss_pred HH
Q 011692 306 CK 307 (479)
Q Consensus 306 ~k 307 (479)
+-
T Consensus 218 ~~ 219 (694)
T PRK15179 218 IG 219 (694)
T ss_pred hC
Confidence 63
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.4e-08 Score=107.76 Aligned_cols=79 Identities=14% Similarity=0.074 Sum_probs=65.0
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHH
Q 011692 219 ARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPY 298 (479)
Q Consensus 219 Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~ 298 (479)
|+..|++.+...|..+.++..||.++..+|+|++|+..|++++.+. |+ .+.++++||.+|...|++++|+.+
T Consensus 269 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-----P~---~~~a~~~La~~l~~~G~~~eA~~~ 340 (656)
T PRK15174 269 AAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-----PD---LPYVRAMYARALRQVGQYTAASDE 340 (656)
T ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CC---CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4444444444345678999999999999999999999999999862 23 357899999999999999999999
Q ss_pred HHHHHHH
Q 011692 299 CQKAISV 305 (479)
Q Consensus 299 ~ekAL~I 305 (479)
|++++..
T Consensus 341 l~~al~~ 347 (656)
T PRK15174 341 FVQLARE 347 (656)
T ss_pred HHHHHHh
Confidence 9998854
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.6e-08 Score=101.75 Aligned_cols=100 Identities=14% Similarity=0.208 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..|..+|..++..|+|++|+++|.+|+++ .|..+.+|+++|.+|+.+
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~------------------------ 49 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKL------------------------ 49 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc------------------------
Confidence 456889999999999999999999999998 788999999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++|+.|+..|+.|+.+.
T Consensus 50 -------------------------------------------------------------g~~~eAl~~~~~Al~l~-- 66 (356)
T PLN03088 50 -------------------------------------------------------------GNFTEAVADANKAIELD-- 66 (356)
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHhC--
Confidence 35677887777777652
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
+..+.+|++||.+++.+|+|++|+.+|++||.+..
T Consensus 67 -----P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 67 -----PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred -----cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 35678999999999999999999999999998853
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.1e-07 Score=95.51 Aligned_cols=59 Identities=19% Similarity=0.190 Sum_probs=49.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhcc
Q 011692 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (479)
Q Consensus 59 ~~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~e 125 (479)
.++-...+...+.+|..++..|+|++|+.+|.+++++ +|.+..+|+.+|.+++..++.+
T Consensus 28 ~~~~~~~~~~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~ 86 (389)
T PRK11788 28 QQKESNRLSRDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVD 86 (389)
T ss_pred hhhhhhhccHHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHH
Confidence 3444455667778899999999999999999999997 6888999999999999886553
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.7e-08 Score=90.20 Aligned_cols=101 Identities=13% Similarity=0.038 Sum_probs=80.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|+..|..|+.+.. .+...+.+|.+||.++...|+|++|+..|++||.+..... ..+..++.+|+++|..+
T Consensus 49 g~~~~A~~~~~~al~l~~----~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~-~~~~~la~i~~~~~~~~ 123 (168)
T CHL00033 49 GEYAEALQNYYEAMRLEI----DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP-QALNNMAVICHYRGEQA 123 (168)
T ss_pred CCHHHHHHHHHHHHhccc----cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-HHHHHHHHHHHHhhHHH
Confidence 457788889999988743 2334678999999999999999999999999999854432 33556666666677666
Q ss_pred HcCCChhHHHHHHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCKSRVQR 312 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k~rl~~ 312 (479)
...|+++.|+.+|.+|+.+++..++.
T Consensus 124 ~~~g~~~~A~~~~~~a~~~~~~a~~~ 149 (168)
T CHL00033 124 IEQGDSEIAEAWFDQAAEYWKQAIAL 149 (168)
T ss_pred HHcccHHHHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999998887764
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-07 Score=87.86 Aligned_cols=149 Identities=13% Similarity=0.043 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..++.+|..++..|+|++|+..|.+++.+. +.+|....+++.+|.+|+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~---------------------- 83 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKS---------------------- 83 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhc----------------------
Confidence 347789999999999999999999999998873 33455667899999999864
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|...|+.++.++
T Consensus 84 ---------------------------------------------------------------~~~~~A~~~~~~~l~~~ 100 (235)
T TIGR03302 84 ---------------------------------------------------------------GDYAEAIAAADRFIRLH 100 (235)
T ss_pred ---------------------------------------------------------------CCHHHHHHHHHHHHHHC
Confidence 35667777777777554
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHhcCC---------CChhHHHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALER--------EDIETSLSDYQKALTILERMVEP---------DSRHIAELNFRICLCL 286 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~--------g~yeeAl~dy~kAL~I~~~llg~---------d~r~iAea~~~LG~ay 286 (479)
-. ++....+++.+|.++... +++++|+..|++++......... -...+...++.+|.+|
T Consensus 101 p~----~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~ 176 (235)
T TIGR03302 101 PN----HPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFY 176 (235)
T ss_pred cC----CCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 32 345667889999999876 88999999999998764332100 0111223346889999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...|++.+|+..|++++..+
T Consensus 177 ~~~g~~~~A~~~~~~al~~~ 196 (235)
T TIGR03302 177 LKRGAYVAAINRFETVVENY 196 (235)
T ss_pred HHcCChHHHHHHHHHHHHHC
Confidence 99999999999999998764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.7e-08 Score=109.77 Aligned_cols=133 Identities=22% Similarity=0.242 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
-..+...|+.+--|++++.|+.||.||+++ .|..+-+|-++|-=+...
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~------------------------ 468 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIAT------------------------ 468 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhh------------------------
Confidence 346778999999999999999999999998 677777776665322211
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+.|+.|.. .|.+
T Consensus 469 -------------------------------------------------------------ee~d~a~~-------~fr~ 480 (638)
T KOG1126|consen 469 -------------------------------------------------------------EEFDKAMK-------SFRK 480 (638)
T ss_pred -------------------------------------------------------------HHHHhHHH-------HHHh
Confidence 23444444 4444
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+.-.++.-++|+-||-||+.+|+|+.|.-+|++|+.|-... ......+|..|...++.++|+.+|++|+-+
T Consensus 481 Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~n--------svi~~~~g~~~~~~k~~d~AL~~~~~A~~l 552 (638)
T KOG1126|consen 481 ALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSN--------SVILCHIGRIQHQLKRKDKALQLYEKAIHL 552 (638)
T ss_pred hhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccc--------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence 444456778899999999999999999999999999995433 356778999999999999999999999976
Q ss_pred H
Q 011692 306 C 306 (479)
Q Consensus 306 ~ 306 (479)
-
T Consensus 553 d 553 (638)
T KOG1126|consen 553 D 553 (638)
T ss_pred C
Confidence 4
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.4e-07 Score=104.20 Aligned_cols=187 Identities=16% Similarity=0.071 Sum_probs=116.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
+..++..|..++.+|+|++|+..|.+++++ +|..+.+++.+|.+++..++.+... |......
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------- 85 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEKELRKALSL-------- 85 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------
Confidence 457899999999999999999999999987 7889999999999999986653321 1000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCcccc---ccc-cCcC-----hHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVA---EAD-EDES-----DLDLAWK 214 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~---~~~-ed~~-----dle~Awe 214 (479)
.+.+.. ........ ....+.. ++... ... .... .+..++.
T Consensus 86 ----------~~~~~~--~~~~~a~~------------~~~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (899)
T TIGR02917 86 ----------GYPKNQ--VLPLLARA------------YLLQGKF-------QQVLDELPGKTLLDDEGAAELLALRGLA 134 (899)
T ss_pred ----------CCChhh--hHHHHHHH------------HHHCCCH-------HHHHHhhcccccCCchhhHHHHHHHHHH
Confidence 000000 00000000 0000000 00000 000 0000 1112222
Q ss_pred -----HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC
Q 011692 215 -----MLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 289 (479)
Q Consensus 215 -----~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 289 (479)
-++.|+..|.+.....+....++..+|.+++..|+|++|+..+++++.+. + ....+++.+|.+|...
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~ 206 (899)
T TIGR02917 135 YLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTAD-----P---GNVDALLLKGDLLLSL 206 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C---CChHHHHHHHHHHHhc
Confidence 23667777776655455667788888888888888888888888887752 2 2247888899999999
Q ss_pred CChhHHHHHHHHHHHHHH
Q 011692 290 SKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 290 g~~eeAi~~~ekAL~I~k 307 (479)
|++++|+.+|++++.+..
T Consensus 207 g~~~~A~~~~~~a~~~~p 224 (899)
T TIGR02917 207 GNIELALAAYRKAIALRP 224 (899)
T ss_pred CCHHHHHHHHHHHHhhCC
Confidence 999999999999987654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.75 E-value=9.5e-08 Score=83.86 Aligned_cols=84 Identities=20% Similarity=0.242 Sum_probs=69.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
+++.|.++|+.+..+ .+....+|..+|.++..+++|++|+..|++++.+. +.....||++|.+|.
T Consensus 32 ~~~~A~~~~~~~~~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 32 RYDEALKLFQLLAAY-------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--------PDDPRPYFHAAECLL 96 (135)
T ss_pred cHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CCChHHHHHHHHHHH
Confidence 456676666665543 23457899999999999999999999999999873 334689999999999
Q ss_pred cCCChhHHHHHHHHHHHHH
Q 011692 288 IGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 288 ~~g~~eeAi~~~ekAL~I~ 306 (479)
..|++++|+.+|++++.+.
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 97 ALGEPESALKALDLAIEIC 115 (135)
T ss_pred HcCCHHHHHHHHHHHHHhc
Confidence 9999999999999998764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-07 Score=93.29 Aligned_cols=98 Identities=22% Similarity=0.218 Sum_probs=82.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+++..|-+.|..|-.++.+. +.....+.+|...+.++... ++++|+..|++|+.|..+.- ..+..|.++.+||.+|
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~-~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G--~~~~aA~~~~~lA~~y 124 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKL-GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG--RFSQAAKCLKELAEIY 124 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT---HHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC--cHHHHHHHHHHHHHHH
Confidence 45677888899999999884 44567899999999998887 99999999999999998753 5677899999999999
Q ss_pred HcC-CChhHHHHHHHHHHHHHHH
Q 011692 287 EIG-SKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 287 ~~~-g~~eeAi~~~ekAL~I~k~ 308 (479)
+.. +++++|+++|++|+++++.
T Consensus 125 e~~~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 125 EEQLGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp CCTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHH
Confidence 999 9999999999999999874
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.74 E-value=4e-07 Score=87.68 Aligned_cols=150 Identities=14% Similarity=0.073 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCc
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~d 146 (479)
..++.+|..++.+|+|++|+..|.+++++. +.++....++|++|.+++.. ++...
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~g~~~~~~-------~~~~~------------- 125 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLH-----PNHPDADYAYYLRGLSNYNQ-------IDRVD------------- 125 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCCchHHHHHHHHHHHHHh-------ccccc-------------
Confidence 457889999999999999999999999862 45667777899999999875 11000
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011692 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226 (479)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~ 226 (479)
...++++.|.+.|+.+...+-..
T Consensus 126 ---------------------------------------------------------~~~~~~~~A~~~~~~~~~~~p~~ 148 (235)
T TIGR03302 126 ---------------------------------------------------------RDQTAAREAFEAFQELIRRYPNS 148 (235)
T ss_pred ---------------------------------------------------------CCHHHHHHHHHHHHHHHHHCCCC
Confidence 01134555555555444332211
Q ss_pred cCC----------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 227 WGD----------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 227 ~~~----------~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
... .......+..+|.+++.+|+|.+|+..|++++... ++++..+.+++++|.+|...|++++|+
T Consensus 149 ~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~ 223 (235)
T TIGR03302 149 EYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQ 223 (235)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 100 01123445689999999999999999999998874 345778999999999999999999999
Q ss_pred HHHHHHH
Q 011692 297 PYCQKAI 303 (479)
Q Consensus 297 ~~~ekAL 303 (479)
.+|+...
T Consensus 224 ~~~~~l~ 230 (235)
T TIGR03302 224 DAAAVLG 230 (235)
T ss_pred HHHHHHH
Confidence 9887644
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.5e-07 Score=111.37 Aligned_cols=167 Identities=14% Similarity=0.110 Sum_probs=100.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCCCCccc
Q 011692 71 EKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGSDKDDS 148 (479)
Q Consensus 71 ~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~~~de~ 148 (479)
.+|..++..|+|++|+.+|.+++++ +|..+.+++.+|.+|+..++.+... |-...+.
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~------------- 332 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRA--------NPKDSEALGALGQAYSQQGDRARAVAQFEKALAL------------- 332 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------
Confidence 4588999999999999999999998 7889999999999999885543211 0000000
Q ss_pred cccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHH-----HHHHHHHHHH
Q 011692 149 VKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAW-----KMLDVARAIA 223 (479)
Q Consensus 149 ~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Aw-----e~Le~Ar~Iy 223 (479)
++... .. . .. ......-.-.-.+..+. .-++.|+..|
T Consensus 333 -----~p~~~------------------~~-----~--~~--------~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~ 374 (1157)
T PRK11447 333 -----DPHSS------------------NR-----D--KW--------ESLLKVNRYWLLIQQGDAALKANNLAQAERLY 374 (1157)
T ss_pred -----CCCcc------------------ch-----h--HH--------HHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 00000 00 0 00 00000000000001111 1235566777
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
++.....+..+.+|..||.++...|+|++|+..|+++|++... + +.++++|+.+|.. +++++|+.++++..
T Consensus 375 ~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-----~---~~a~~~L~~l~~~-~~~~~A~~~l~~l~ 445 (1157)
T PRK11447 375 QQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-----N---TNAVRGLANLYRQ-QSPEKALAFIASLS 445 (1157)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C---HHHHHHHHHHHHh-cCHHHHHHHHHhCC
Confidence 7766655666777888888888888888888888888877422 2 3567778887753 46778877776644
Q ss_pred HH
Q 011692 304 SV 305 (479)
Q Consensus 304 ~I 305 (479)
..
T Consensus 446 ~~ 447 (1157)
T PRK11447 446 AS 447 (1157)
T ss_pred HH
Confidence 43
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2e-07 Score=100.23 Aligned_cols=107 Identities=17% Similarity=0.164 Sum_probs=90.1
Q ss_pred cChHHHHHHHH-------HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 011692 206 ESDLDLAWKML-------DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAEL 278 (479)
Q Consensus 206 ~~dle~Awe~L-------e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea 278 (479)
+.|++.++-+| ++|..+|+-.+...|.-...|++||-..--..++++||..|++||+|+..+. .+
T Consensus 429 DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yV--------R~ 500 (579)
T KOG1125|consen 429 DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYV--------RV 500 (579)
T ss_pred ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCee--------ee
Confidence 45666666554 7777777777766788889999999999999999999999999999998775 88
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHH-------------HHHHHHHHHhhh
Q 011692 279 NFRICLCLEIGSKPQEAIPYCQKAISVCKS-------------RVQRLLNEVKSL 320 (479)
Q Consensus 279 ~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~-------------rl~~l~~~l~~~ 320 (479)
-||||++|..+|.|++|++||-.||.|.++ .+..|+..|-..
T Consensus 501 RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~ 555 (579)
T KOG1125|consen 501 RYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAM 555 (579)
T ss_pred ehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHc
Confidence 999999999999999999999999999887 566666555443
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.1e-08 Score=71.66 Aligned_cols=38 Identities=39% Similarity=0.758 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPD 271 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d 271 (479)
|+||..||+|+++.++|++|+.+|++||+|++++++++
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~~ 38 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELLPPE 38 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 57999999999999999999999999999999999864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.6e-07 Score=93.43 Aligned_cols=84 Identities=12% Similarity=0.017 Sum_probs=68.6
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
++..|...|+.|+.+ .+..+.+|+.||.++...|+|++|+..|+++|++... -+.+|+++|.+|.
T Consensus 79 ~~~~A~~~~~~Al~l-------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~--------~~~a~~~lg~~l~ 143 (296)
T PRK11189 79 LRALARNDFSQALAL-------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT--------YNYAYLNRGIALY 143 (296)
T ss_pred CHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHH
Confidence 344555555555543 4567899999999999999999999999999987433 2578999999999
Q ss_pred cCCChhHHHHHHHHHHHHH
Q 011692 288 IGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 288 ~~g~~eeAi~~~ekAL~I~ 306 (479)
..|++++|+..|++++.+.
T Consensus 144 ~~g~~~eA~~~~~~al~~~ 162 (296)
T PRK11189 144 YGGRYELAQDDLLAFYQDD 162 (296)
T ss_pred HCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999864
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.2e-07 Score=105.02 Aligned_cols=162 Identities=12% Similarity=0.059 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCCCC
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~~~ 145 (479)
..+..|..++..|+|++|+.+|.+++.. .|. ...++.+|.+++..++.+... +-.....
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~--------~p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l---------- 571 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH--------DMS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR---------- 571 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc--------CCC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----------
Confidence 3667788888999999999999997543 122 245789999998875442210 0000000
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.+... .... .........++++.|...|+.|+.+
T Consensus 572 --------~P~~~------------------~l~~-----------------~La~~l~~~Gr~~eAl~~~~~AL~l--- 605 (987)
T PRK09782 572 --------GLGDN------------------ALYW-----------------WLHAQRYIPGQPELALNDLTRSLNI--- 605 (987)
T ss_pred --------CCccH------------------HHHH-----------------HHHHHHHhCCCHHHHHHHHHHHHHh---
Confidence 00000 0000 0000001226677777776666543
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+. +..|.+||.++...|++++|+..|++++.+.. ++ +.+|++||.+|...|++++|+.+|++|+.+
T Consensus 606 ----~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-----d~---~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 606 ----APS-ANAYVARATIYRQRHNVPAAVSDLRAALELEP-----NN---SNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred ----CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344 78999999999999999999999999999843 33 489999999999999999999999999987
Q ss_pred HH
Q 011692 306 CK 307 (479)
Q Consensus 306 ~k 307 (479)
..
T Consensus 673 ~P 674 (987)
T PRK09782 673 LP 674 (987)
T ss_pred CC
Confidence 53
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.2e-07 Score=99.84 Aligned_cols=91 Identities=19% Similarity=0.171 Sum_probs=77.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
..|..|..+|..++...+..+...+.-.-++++||-++..+++|++||.+|+++|.+..+. +.+|-.||.+|
T Consensus 428 ~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~--------~~~~asig~iy 499 (611)
T KOG1173|consen 428 EEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD--------ASTHASIGYIY 499 (611)
T ss_pred hhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc--------hhHHHHHHHHH
Confidence 4688888888888855544444444567789999999999999999999999999987655 59999999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
..+|+++.|+.||.+||.+
T Consensus 500 ~llgnld~Aid~fhKaL~l 518 (611)
T KOG1173|consen 500 HLLGNLDKAIDHFHKALAL 518 (611)
T ss_pred HHhcChHHHHHHHHHHHhc
Confidence 9999999999999999976
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=2.9e-07 Score=109.03 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCCCC
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~~~ 145 (479)
.++.+|..++..|+|++|+.+|.+++++ +|..+.+++.+|.+++..++.+... +-.+.+.
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~---------- 414 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM---------- 414 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----------
Confidence 4467789999999999999999999998 7888899999999999886543221 0000000
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++... . . .. ...... ...+++.|..+++.......+
T Consensus 415 --------~p~~~------~---a-----~~---------------------~L~~l~-~~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 415 --------DPGNT------N---A-----VR---------------------GLANLY-RQQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred --------CCCCH------H---H-----HH---------------------HHHHHH-HhcCHHHHHHHHHhCCHHHHH
Confidence 00000 0 0 00 000000 001122333332211110000
Q ss_pred hcCC--cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 226 HWGD--SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 226 ~~~~--~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.... ..-..+.+..+|.++...|+|++|+..|+++|++. |++ ..++++||.+|...|++++|+..|++++
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-----P~~---~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-----PGS---VWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 0000 00124578899999999999999999999999874 333 4689999999999999999999999988
Q ss_pred HH
Q 011692 304 SV 305 (479)
Q Consensus 304 ~I 305 (479)
.+
T Consensus 523 ~~ 524 (1157)
T PRK11447 523 QQ 524 (1157)
T ss_pred Hc
Confidence 75
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.7e-07 Score=82.61 Aligned_cols=55 Identities=22% Similarity=0.258 Sum_probs=46.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
....+..++.+|..++..|+|++|+.+|.+++.+. +.+++.+.+|+++|.+++..
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~ 85 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASN 85 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHc
Confidence 34568889999999999999999999999999973 23445678999999999875
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=83.18 Aligned_cols=103 Identities=24% Similarity=0.295 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++..|+|++|+.+|.+|+.+ .|+.+.+|+.||.+|+... |
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~aL~~~~-------g--------------- 122 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALATVLYYQA-------G--------------- 122 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhc-------C---------------
Confidence 566899999999999999999999999998 7999999999999986530 0
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
...+..|.++|+.++.+
T Consensus 123 ------------------------------------------------------------~~~~~~A~~~l~~al~~--- 139 (198)
T PRK10370 123 ------------------------------------------------------------QHMTPQTREMIDKALAL--- 139 (198)
T ss_pred ------------------------------------------------------------CCCcHHHHHHHHHHHHh---
Confidence 01234566666666543
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
.+....+|++||.++++.|+|++|+.+|+++|++..
T Consensus 140 ----dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 140 ----DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred ----CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 455678999999999999999999999999988754
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.59 E-value=5.3e-07 Score=89.57 Aligned_cols=64 Identities=22% Similarity=0.240 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 236 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 236 v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
.+..||.+++.+|++++|+..|++++.+.+. + ..++..+|.+|...|++++|+.++++++.-++
T Consensus 216 ~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~-----d---~~~~~~~a~~l~~~g~~~~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 216 LWDALAAAYLQLGRYEEALEYLEKALKLNPD-----D---PLWLLAYADALEQAGRKDEALRLRRQALRLLR 279 (280)
T ss_dssp HCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT---------HHHHHHHHHHHT--------------------
T ss_pred HHHHHHHHhcccccccccccccccccccccc-----c---cccccccccccccccccccccccccccccccC
Confidence 6778999999999999999999999876443 3 37788999999999999999999999886543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=98.53 E-value=2e-06 Score=95.08 Aligned_cols=168 Identities=17% Similarity=0.110 Sum_probs=114.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQG 142 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~ 142 (479)
.+..+..+|..++..|+|++|..+|.+++++ +|....+++.+|.+++..++.+... +-....
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------- 187 (899)
T TIGR02917 124 AAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLGLAQLALAENRFDEARALIDEVLT-------- 187 (899)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHH--------
Confidence 3567788999999999999999999999886 5777788999999988875442210 000000
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
.++... . . .. -.+...-..++++.|...|+.++.+
T Consensus 188 ----------~~~~~~------~---~-----~~---------------------~~~~~~~~~g~~~~A~~~~~~a~~~ 222 (899)
T TIGR02917 188 ----------ADPGNV------D---A-----LL---------------------LKGDLLLSLGNIELALAAYRKAIAL 222 (899)
T ss_pred ----------hCCCCh------H---H-----HH---------------------HHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 000000 0 0 00 0000001225666777666666533
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
.+....++..++.+++..|+|++|...|++++.+. +++ ...++.+|.++...|++++|+.+|+++
T Consensus 223 -------~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~A~~~~~~~ 287 (899)
T TIGR02917 223 -------RPNNPAVLLALATILIEAGEFEEAEKHADALLKKA-----PNS---PLAHYLKALVDFQKKNYEDARETLQDA 287 (899)
T ss_pred -------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---chHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34557789999999999999999999999988753 223 357888999999999999999999999
Q ss_pred HHHHHH
Q 011692 303 ISVCKS 308 (479)
Q Consensus 303 L~I~k~ 308 (479)
+.+...
T Consensus 288 l~~~~~ 293 (899)
T TIGR02917 288 LKSAPE 293 (899)
T ss_pred HHhCCC
Confidence 987644
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-06 Score=92.52 Aligned_cols=99 Identities=17% Similarity=0.129 Sum_probs=60.8
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKV-DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A-~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
..+|+.|.++|++|..+=.+...-....+ -+|-.|-.. ...++|.+|+..+++|+++-.+. =.+|-.||.
T Consensus 475 qqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkc--------e~A~~tlaq 545 (606)
T KOG0547|consen 475 QQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKC--------EQAYETLAQ 545 (606)
T ss_pred HHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchH--------HHHHHHHHH
Confidence 35666666666666654322211122221 122222222 23466666666666666664433 367888999
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 011692 285 CLEIGSKPQEAIPYCQKAISVCKSRVQRL 313 (479)
Q Consensus 285 ay~~~g~~eeAi~~~ekAL~I~k~rl~~l 313 (479)
....+++.++||++|++++.+-+...+.+
T Consensus 546 ~~lQ~~~i~eAielFEksa~lArt~~E~~ 574 (606)
T KOG0547|consen 546 FELQRGKIDEAIELFEKSAQLARTESEMV 574 (606)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999998877766655
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.3e-06 Score=85.43 Aligned_cols=129 Identities=17% Similarity=0.128 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCc
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~d 146 (479)
..+..++..+..+|+.+.|-+.|.+|+.+ +|..++++++||--|+.++
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--------~p~~GdVLNNYG~FLC~qg------------------------ 117 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSL--------APNNGDVLNNYGAFLCAQG------------------------ 117 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhc--------CCCccchhhhhhHHHHhCC------------------------
Confidence 44566777788899999999999999998 9999999999999999762
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011692 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226 (479)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~ 226 (479)
.++.|+.+|+.|.. .
T Consensus 118 -------------------------------------------------------------~~~eA~q~F~~Al~----~ 132 (250)
T COG3063 118 -------------------------------------------------------------RPEEAMQQFERALA----D 132 (250)
T ss_pred -------------------------------------------------------------ChHHHHHHHHHHHh----C
Confidence 34556777777653 1
Q ss_pred cCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 227 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 227 ~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
..-...+++|.|+|.+.+..|++++|..+|+++|++..... .+...++..+...|+|-.|.-+|++
T Consensus 133 -P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~--------~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 133 -PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP--------PALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred -CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC--------hHHHHHHHHHHhcccchHHHHHHHH
Confidence 12356789999999999999999999999999999976653 5666777778888999999877765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.6e-06 Score=79.15 Aligned_cols=85 Identities=14% Similarity=0.188 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|+.|..+|+....+ .+..++-|++||-++..+|+|.+||..|.+|+.+.. ++ +.+|+++|.||
T Consensus 49 G~l~~A~~~f~~L~~~-------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-----dd---p~~~~~ag~c~ 113 (157)
T PRK15363 49 KEFAGAARLFQLLTIY-------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-----DA---PQAPWAAAECY 113 (157)
T ss_pred CCHHHHHHHHHHHHHh-------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CC---chHHHHHHHHH
Confidence 4566666666554432 456789999999999999999999999999998864 33 48999999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...|+.+.|+..|+.||.++
T Consensus 114 L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-06 Score=72.36 Aligned_cols=91 Identities=12% Similarity=0.043 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|.+.|+.++..+ ++ .+....+++.+|.+++..++|++|+..|++++... ++++.+..+++++|.+|
T Consensus 16 ~~~~~A~~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~~~~~~ 86 (119)
T TIGR02795 16 GDYADAIQAFQAFLKKY---PK-STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKSPKAPDALLKLGMSL 86 (119)
T ss_pred CCHHHHHHHHHHHHHHC---CC-ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCCCcccHHHHHHHHHH
Confidence 56777888777776543 22 33457899999999999999999999999999763 56667789999999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...+++++|+.+|++++...
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 87 QELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHhCChHHHHHHHHHHHHHC
Confidence 99999999999999988753
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.1e-06 Score=70.82 Aligned_cols=105 Identities=22% Similarity=0.188 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
++.++.+|..++.+|+|++|+.+|.+++.. + +.++....++|.+|.+++..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~~~l~~~~~~~------------------------ 52 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK----Y-PKSTYAPNAHYWLGEAYYAQ------------------------ 52 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----C-CCccccHHHHHHHHHHHHhh------------------------
Confidence 467899999999999999999999999875 2 23455578999999999865
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|..+|+.+...+-
T Consensus 53 -------------------------------------------------------------~~~~~A~~~~~~~~~~~p- 70 (119)
T TIGR02795 53 -------------------------------------------------------------GKYADAAKAFLAVVKKYP- 70 (119)
T ss_pred -------------------------------------------------------------ccHHHHHHHHHHHHHHCC-
Confidence 457778888777765442
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
.++....++..+|.++...+++++|+..|.+++...
T Consensus 71 ---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 71 ---KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred ---CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 223457889999999999999999999999999884
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.1e-05 Score=71.04 Aligned_cols=139 Identities=23% Similarity=0.141 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
..+.+..++......+..+++..+...|.+... .|+. .+.-..+++.+|++++..
T Consensus 7 ~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~----~~~~-s~ya~~A~l~lA~~~~~~-------------------- 61 (145)
T PF09976_consen 7 QAEQASALYEQALQALQAGDPAKAEAAAEQLAK----DYPS-SPYAALAALQLAKAAYEQ-------------------- 61 (145)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----HCCC-ChHHHHHHHHHHHHHHHC--------------------
Confidence 345678888888888899999998665555444 4443 455577888888888753
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
++|+.|.+.|+.+..
T Consensus 62 -----------------------------------------------------------------g~~~~A~~~l~~~~~ 76 (145)
T PF09976_consen 62 -----------------------------------------------------------------GDYDEAKAALEKALA 76 (145)
T ss_pred -----------------------------------------------------------------CCHHHHHHHHHHHHh
Confidence 567778777776654
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
- ..+ ..-..-++..|+.|++..|+|++|+..++. + ++...-+..+..+|.+|...|++++|+..|++
T Consensus 77 ~---~~d-~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~--~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 77 N---APD-PELKPLARLRLARILLQQGQYDEALATLQQ-------I--PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred h---CCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------c--cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 2 211 222456788999999999999999998855 1 23344567888999999999999999999999
Q ss_pred HH
Q 011692 302 AI 303 (479)
Q Consensus 302 AL 303 (479)
||
T Consensus 144 Al 145 (145)
T PF09976_consen 144 AL 145 (145)
T ss_pred hC
Confidence 86
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=6.5e-06 Score=76.38 Aligned_cols=97 Identities=12% Similarity=0.102 Sum_probs=69.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|+.+|+.+..+... ....+.+|.+||.++...|+|++|+..|++++.+.. .....++.+|.+|
T Consensus 49 g~~~~A~~~~~~al~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~ 116 (172)
T PRK02603 49 GEYAEALENYEEALKLEED----PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP--------KQPSALNNIAVIY 116 (172)
T ss_pred CCHHHHHHHHHHHHHHhhc----cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHH
Confidence 4677888888888776432 224578999999999999999999999999999743 2357788888888
Q ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCKSRVQRLLN 315 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k~rl~~l~~ 315 (479)
...+++..|...+++|+..++.-+..++.
T Consensus 117 ~~~g~~~~a~~~~~~A~~~~~~A~~~~~~ 145 (172)
T PRK02603 117 HKRGEKAEEAGDQDEAEALFDKAAEYWKQ 145 (172)
T ss_pred HHcCChHhHhhCHHHHHHHHHHHHHHHHH
Confidence 88776555555555554444444444433
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-05 Score=92.23 Aligned_cols=153 Identities=17% Similarity=0.047 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+..+|..++..|+|++|..++.+++++... ......+.+++.+|.+++..
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~a~~~lg~~~~~~------------------------ 504 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPL---TWYYSRIVATSVLGEVHHCK------------------------ 504 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC---ccHHHHHHHHHHHHHHHHHc------------------------
Confidence 444455788999999999999999999985211 11122334555666665432
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|...++.++.++.+
T Consensus 505 -------------------------------------------------------------G~~~~A~~~~~~al~~~~~ 523 (903)
T PRK04841 505 -------------------------------------------------------------GELARALAMMQQTEQMARQ 523 (903)
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHHHhh
Confidence 5788899999999988876
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
... ....+.++..||.+++..|++++|...+++++.+.....+..++..+.++..+|.++...|++++|..++++++.+
T Consensus 524 ~g~-~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 602 (903)
T PRK04841 524 HDV-YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEV 602 (903)
T ss_pred hcc-hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh
Confidence 533 3345678999999999999999999999999999998766666666677888899999999999999999998877
Q ss_pred HH
Q 011692 306 CK 307 (479)
Q Consensus 306 ~k 307 (479)
.+
T Consensus 603 ~~ 604 (903)
T PRK04841 603 LS 604 (903)
T ss_pred hh
Confidence 54
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.8e-06 Score=98.53 Aligned_cols=164 Identities=23% Similarity=0.185 Sum_probs=148.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
+..++......|...+.++.|.+|.+ ..+++.++..+||.+||+++..|-.+.+.+..+
T Consensus 928 ~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~-------------------- 986 (1236)
T KOG1839|consen 928 TVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRL-------------------- 986 (1236)
T ss_pred ccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhh--------------------
Confidence 34678899999999999999999999 999999999999999999999999999888765
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
+|++.|..+-..|..
T Consensus 987 -----------------------------------------------------------------~d~~~Ai~~~~ka~i 1001 (1236)
T KOG1839|consen 987 -----------------------------------------------------------------GDNQEAIAQQRKACI 1001 (1236)
T ss_pred -----------------------------------------------------------------cchHHHHHhccccee
Confidence 345667777788999
Q ss_pred HHHHhcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011692 222 IAEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 222 Iyek~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
|++|..+ ++++.+..|.+|+..++..++-..|+..+.+++.+..-.+|++||..|.+..+|+..+...++++.|+.+.+
T Consensus 1002 i~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le 1081 (1236)
T KOG1839|consen 1002 ISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLE 1081 (1236)
T ss_pred eechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHH
Confidence 9999887 578899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 011692 301 KAISVCKSRVQ 311 (479)
Q Consensus 301 kAL~I~k~rl~ 311 (479)
.|+.+-+..+.
T Consensus 1082 ~A~a~~~~v~g 1092 (1236)
T KOG1839|consen 1082 SALAKNKKVLG 1092 (1236)
T ss_pred HHHHHHhhhcC
Confidence 99996555444
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-05 Score=69.96 Aligned_cols=100 Identities=15% Similarity=0.120 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++..|+|.+|..+|.+++.+ +|....+++.+|.+++..
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~------------------------ 64 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQML------------------------ 64 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHH------------------------
Confidence 456889999999999999999999999987 688889999999999876
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+++..|..+|+.++.+
T Consensus 65 -------------------------------------------------------------~~~~~A~~~~~~~~~~--- 80 (135)
T TIGR02552 65 -------------------------------------------------------------KEYEEAIDAYALAAAL--- 80 (135)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHhc---
Confidence 3455676667666554
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
.+.....|..+|.++...|+|++|+..|++++++..
T Consensus 81 ----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 116 (135)
T TIGR02552 81 ----DPDDPRPYFHAAECLLALGEPESALKALDLAIEICG 116 (135)
T ss_pred ----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 245678999999999999999999999999999853
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.38 E-value=7.9e-06 Score=89.30 Aligned_cols=142 Identities=18% Similarity=0.112 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 65 FADELMEKGTNALKESD---YGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gd---yeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
.|-.|+-+|..++..++ +..|++||++|+++ .|..+.+|-.++.++...... . +
T Consensus 338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~-----~--~-------- 394 (517)
T PRK10153 338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQ-----Q--P-------- 394 (517)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhc-----C--C--------
Confidence 57788889988877655 89999999999999 899999998888777543110 0 0
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
.+..++..+...++.+..
T Consensus 395 --------------------------------------------------------------~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 395 --------------------------------------------------------------LDEKQLAALSTELDNIVA 412 (517)
T ss_pred --------------------------------------------------------------ccHHHHHHHHHHHHHhhh
Confidence 001234445444443332
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
+- ..+....+|..+|.++...|+|++|...|++|+.+.. . +.+|+.+|.+|.+.|++++|+++|++
T Consensus 413 l~-----~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p--------s-~~a~~~lG~~~~~~G~~~eA~~~~~~ 478 (517)
T PRK10153 413 LP-----ELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM--------S-WLNYVLLGKVYELKGDNRLAADAYST 478 (517)
T ss_pred cc-----cCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------C-HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 21 1122357899999999999999999999999999972 1 68999999999999999999999999
Q ss_pred HHHH
Q 011692 302 AISV 305 (479)
Q Consensus 302 AL~I 305 (479)
|+.+
T Consensus 479 A~~L 482 (517)
T PRK10153 479 AFNL 482 (517)
T ss_pred HHhc
Confidence 9975
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=2e-05 Score=90.41 Aligned_cols=152 Identities=11% Similarity=0.024 Sum_probs=122.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+..+|..++..|+|++|..+|.+++.+.. .+|..+.. +.+++++|.+++..
T Consensus 491 ~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~-~~g~~~~~-~~~~~~la~~~~~~------------------------ 544 (903)
T PRK04841 491 IVATSVLGEVHHCKGELARALAMMQQTEQMAR-QHDVYHYA-LWSLLQQSEILFAQ------------------------ 544 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-hhcchHHH-HHHHHHHHHHHHHC------------------------
Confidence 44567789999999999999999999999866 45655544 44677888887654
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|...++.++.+..+
T Consensus 545 -------------------------------------------------------------G~~~~A~~~~~~al~~~~~ 563 (903)
T PRK04841 545 -------------------------------------------------------------GFLQAAYETQEKAFQLIEE 563 (903)
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHHHHH
Confidence 5677888888888888877
Q ss_pred hcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 226 HWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 226 ~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
... ..+..+.++..+|.+++..|++++|...+++++.+..... .+..+.++..+|.++...|++++|..++++++.
T Consensus 564 ~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 564 QHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred hccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 533 2233456688899999999999999999999999987543 234567888999999999999999999999988
Q ss_pred HHH
Q 011692 305 VCK 307 (479)
Q Consensus 305 I~k 307 (479)
+..
T Consensus 641 ~~~ 643 (903)
T PRK04841 641 LLG 643 (903)
T ss_pred HHh
Confidence 754
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.5e-05 Score=80.89 Aligned_cols=171 Identities=12% Similarity=-0.039 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcc
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de 147 (479)
.+..+|..++..|+|++|..+|.++++. +|....++.. +.+++..+...... ... .
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~-~~~~~~~~~~~~~~-~~~--------------~ 100 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDD--------YPRDLLALKL-HLGAFGLGDFSGMR-DHV--------------A 100 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHH-hHHHHHhcccccCc-hhH--------------H
Confidence 4566888999999999999999999986 6766666665 66666554321100 000 0
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011692 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 227 (479)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~ 227 (479)
...... .......... - -..+......++++.|..+++.++.+
T Consensus 101 ~~l~~~-----------------~~~~~~~~~~---~------------~~~a~~~~~~G~~~~A~~~~~~al~~----- 143 (355)
T cd05804 101 RVLPLW-----------------APENPDYWYL---L------------GMLAFGLEEAGQYDRAEEAARRALEL----- 143 (355)
T ss_pred HHHhcc-----------------CcCCCCcHHH---H------------HHHHHHHHHcCCHHHHHHHHHHHHhh-----
Confidence 000000 0000000000 0 00000012235566666555555443
Q ss_pred CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 228 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 228 ~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+..+.+|..||.++.+.|++++|+..|++++.+... +.......|+.++.+|..+|++++|+.+|++++..
T Consensus 144 --~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 144 --NPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred --CCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 3344778999999999999999999999999987643 22233567889999999999999999999998643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.1e-06 Score=88.60 Aligned_cols=99 Identities=19% Similarity=0.097 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.+|+.|...|..|+ ...+.-|--|.+-+-+|+++|.|+.|+.+.++||.|-.. ...+|.+||++|
T Consensus 95 ~~Y~eAv~kY~~AI-------~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~--------yskay~RLG~A~ 159 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAI-------ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH--------YSKAYGRLGLAY 159 (304)
T ss_pred hhHHHHHHHHHHHH-------hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH--------HHHHHHHHHHHH
Confidence 55666665555555 345667888999999999999999999999999999554 469999999999
Q ss_pred HcCCChhHHHHHHHHHHHH------HHHHHHHHHHHHhhh
Q 011692 287 EIGSKPQEAIPYCQKAISV------CKSRVQRLLNEVKSL 320 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I------~k~rl~~l~~~l~~~ 320 (479)
.-+|+|.+|++.|+|||+| ++..|...+..+...
T Consensus 160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~ 199 (304)
T KOG0553|consen 160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP 199 (304)
T ss_pred HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence 9999999999999999976 566666666555544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.7e-06 Score=90.19 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=74.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|+.|.+.|+.|+.+ .+..+.+|.++|.+++.+|+|++|+.+|+++|.+.. ..+.+|++||.+|
T Consensus 16 ~~~~~Ai~~~~~Al~~-------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--------~~~~a~~~lg~~~ 80 (356)
T PLN03088 16 DDFALAVDLYTQAIDL-------DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP--------SLAKAYLRKGTAC 80 (356)
T ss_pred CCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------CCHHHHHHHHHHH
Confidence 6788888888877754 345678999999999999999999999999999854 3368899999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
..+|+|++|+.+|+++|.+.
T Consensus 81 ~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 81 MKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred HHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999874
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-05 Score=74.32 Aligned_cols=103 Identities=13% Similarity=0.118 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCC
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~ 142 (479)
-+..+.+...|..++..|+|++|..+|+-.|.+ .|.+++.||++|.++..+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~--------------------- 82 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQ--------------------- 82 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHH---------------------
Confidence 345778889999999999999999999999999 899999999999999775
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
++|+.|.+.|.+|..+
T Consensus 83 ----------------------------------------------------------------g~~~~AI~aY~~A~~L 98 (157)
T PRK15363 83 ----------------------------------------------------------------KHWGEAIYAYGRAAQI 98 (157)
T ss_pred ----------------------------------------------------------------hhHHHHHHHHHHHHhc
Confidence 3577777777777654
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
.++-...|.++|.+++..|+.+.|...|+.|+.+.-
T Consensus 99 -------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 99 -------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred -------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 345678999999999999999999999999999983
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-06 Score=90.93 Aligned_cols=71 Identities=11% Similarity=0.235 Sum_probs=63.1
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 230 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 230 ~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+..+..|++||.+|..+|+|++|+..|++||+|. |++.....+|||||.||..+|++++|+.+|++||++
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999995 344444467999999999999999999999999997
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=5e-06 Score=86.91 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=84.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|..|.+.|-.|+.|--. +..-.+.+|.+++.|++.+|+..+||.+...||.|-..++ .+|.+.|.||
T Consensus 263 G~y~~A~E~Yteal~idP~---n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi--------kall~ra~c~ 331 (486)
T KOG0550|consen 263 GNYRKAYECYTEALNIDPS---NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI--------KALLRRANCH 331 (486)
T ss_pred cchhHHHHHHHHhhcCCcc---ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH--------HHHHHHHHHH
Confidence 7899999888888876422 3345799999999999999999999999999999977764 9999999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH-----HHHHHHHHHHh
Q 011692 287 EIGSKPQEAIPYCQKAISVCK-----SRVQRLLNEVK 318 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k-----~rl~~l~~~l~ 318 (479)
..+++|++|++.|++|+..-+ ..+.+.+.+|+
T Consensus 332 l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLk 368 (486)
T KOG0550|consen 332 LALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALK 368 (486)
T ss_pred HHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 999999999999999998744 34444555555
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.7e-06 Score=68.83 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|..+++........ .. ...++..||.+++.+|+|++|+..+++ +.+.... ..+++.+|.||
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~--------~~~~~l~a~~~ 68 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPT----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN--------PDIHYLLARCL 68 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCG----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH--------HHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCC----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC--------HHHHHHHHHHH
Confidence 5777787777766554321 11 455777899999999999999999999 5554432 58888999999
Q ss_pred HcCCChhHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKA 302 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekA 302 (479)
..+++|++|+.+|++|
T Consensus 69 ~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcC
Confidence 9999999999999886
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-06 Score=61.17 Aligned_cols=42 Identities=29% Similarity=0.372 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH 274 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~ 274 (479)
++.++++||.+|..+|+|++|+..|++++.|+++++|++||.
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 478999999999999999999999999999999999999984
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.26 E-value=8.2e-06 Score=62.96 Aligned_cols=97 Identities=25% Similarity=0.331 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcc
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de 147 (479)
.++.+|..++.+|+|++|+.+|.+++.+ .|....+++.+|.+++..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-------------------------- 47 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL--------DPDNADAYYNLAAAYYKL-------------------------- 47 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHH--------------------------
Confidence 4678999999999999999999999987 344457889999998875
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011692 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 227 (479)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~ 227 (479)
++++.|..+|+.+..+..
T Consensus 48 -----------------------------------------------------------~~~~~a~~~~~~~~~~~~--- 65 (100)
T cd00189 48 -----------------------------------------------------------GKYEEALEDYEKALELDP--- 65 (100)
T ss_pred -----------------------------------------------------------HHHHHHHHHHHHHHhCCC---
Confidence 345567777766665432
Q ss_pred CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 228 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 228 ~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
....++..+|.++...++++.|+..|.+++.+.
T Consensus 66 ----~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 66 ----DNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred ----cchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 223789999999999999999999999988653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.6e-06 Score=88.65 Aligned_cols=171 Identities=22% Similarity=0.218 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCC--CCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVS--VPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~--~~~~~~e~~~~~ 143 (479)
+..++.-|.-++-.|+|.+|..+|++|..| .|..++++..||.++...+..+..+-.. +.+.
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-------- 375 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-------- 375 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh--------
Confidence 556788888889999999999999999998 7888999999999997654332211000 0000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
+.+. ..... ..+- .----+++.+|-.+|..|..|+
T Consensus 376 ------------------~~G~--------hlP~L---Ylgm----------------ey~~t~n~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 376 ------------------MPGC--------HLPSL---YLGM----------------EYMRTNNLKLAEKFFKQALAIA 410 (611)
T ss_pred ------------------ccCC--------cchHH---HHHH----------------HHHHhccHHHHHHHHHHHHhcC
Confidence 0000 00000 0000 0001245666666666666654
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
|.---+++-||.|....+.|.+|+.+|+++|...+.++. +.+.-.-++.|||.+|.++++|++||.+||+||
T Consensus 411 -------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~-e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL 482 (611)
T KOG1173|consen 411 -------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN-EKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL 482 (611)
T ss_pred -------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc-cccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 223347889999999999999999999999966665554 444677889999999999999999999999999
Q ss_pred HH
Q 011692 304 SV 305 (479)
Q Consensus 304 ~I 305 (479)
.+
T Consensus 483 ~l 484 (611)
T KOG1173|consen 483 LL 484 (611)
T ss_pred Hc
Confidence 75
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.1e-06 Score=90.34 Aligned_cols=131 Identities=14% Similarity=0.125 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
++-...+|..|+-.|+|++|++||+.||.. .|....+++.||-+|-.-
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v--------~Pnd~~lWNRLGAtLAN~------------------------ 477 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQV--------KPNDYLLWNRLGATLANG------------------------ 477 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhc--------CCchHHHHHHhhHHhcCC------------------------
Confidence 455668999999999999999999999998 799999999999888431
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+....|...|.+|+
T Consensus 478 -------------------------------------------------------------~~s~EAIsAY~rAL----- 491 (579)
T KOG1125|consen 478 -------------------------------------------------------------NRSEEAISAYNRAL----- 491 (579)
T ss_pred -------------------------------------------------------------cccHHHHHHHHHHH-----
Confidence 11223444444444
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH--HHHHHHHHHHHcCCChhHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIA--ELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iA--ea~~~LG~ay~~~g~~eeAi 296 (479)
..+|..+++..+||..|+.+|.|.+|+.+|-.||.|+++......--.+ .++-.|=+++...++.+-+.
T Consensus 492 --qLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 492 --QLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred --hcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 4467899999999999999999999999999999999996543221111 22333335555555555343
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.6e-05 Score=90.60 Aligned_cols=129 Identities=14% Similarity=0.005 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+..+|..+...|+|.+|+.+|.+++++ .|....+++.+|.+|+..
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~l~~~------------------------ 96 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDYQRGLILTLADA------------------------ 96 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHC------------------------
Confidence 344777788888888888888888888877 577777777777777643
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|..+|+.++..
T Consensus 97 -------------------------------------------------------------g~~~eA~~~l~~~l~~--- 112 (765)
T PRK10049 97 -------------------------------------------------------------GQYDEALVKAKQLVSG--- 112 (765)
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHh---
Confidence 3566677666666543
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.+..+. |..||.++...|++++|+..|++++++.... ..+++.++.++...+.+++|+..+++++
T Consensus 113 ----~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~--------~~~~~~la~~l~~~~~~e~Al~~l~~~~ 177 (765)
T PRK10049 113 ----APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQT--------QQYPTEYVQALRNNRLSAPALGAIDDAN 177 (765)
T ss_pred ----CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHCCChHHHHHHHHhCC
Confidence 234566 9999999999999999999999999985432 5788889999999999999998888544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.21 E-value=3.8e-06 Score=65.16 Aligned_cols=60 Identities=20% Similarity=0.292 Sum_probs=53.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 238 SALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 238 ~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
+.+|.+++..|+|++|+..|+++|+.. |.-+.+++.||.||..+|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~--------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQD--------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCS--------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 368999999999999999999998764 445799999999999999999999999999875
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=2.4e-05 Score=88.66 Aligned_cols=94 Identities=13% Similarity=0.127 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+||+.+|.+.+-|..-- ....-.++.|+.||..|..+|+|++|-.+|.+++..-. ++ ....|+.||..|
T Consensus 284 ~dy~~v~~la~~ai~~t----~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~-----d~--~~l~~~GlgQm~ 352 (1018)
T KOG2002|consen 284 KDYERVWHLAEHAIKNT----ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN-----DN--FVLPLVGLGQMY 352 (1018)
T ss_pred ccHHHHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC-----CC--ccccccchhHHH
Confidence 68999998776665432 12345789999999999999999999999999987632 22 457899999999
Q ss_pred HcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
...|+++.|+-+|++.+...+...+
T Consensus 353 i~~~dle~s~~~fEkv~k~~p~~~e 377 (1018)
T KOG2002|consen 353 IKRGDLEESKFCFEKVLKQLPNNYE 377 (1018)
T ss_pred HHhchHHHHHHHHHHHHHhCcchHH
Confidence 9999999999999999998875443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.2e-05 Score=82.03 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHH
Q 011692 219 ARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPY 298 (479)
Q Consensus 219 Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~ 298 (479)
|+--|+|.....|.=...+..||++|..+++.++|+.+|.+|+..-.- -..+|++||..|+.++++++|..+
T Consensus 417 aLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt--------e~~~l~~LakLye~l~d~~eAa~~ 488 (559)
T KOG1155|consen 417 ALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT--------EGSALVRLAKLYEELKDLNEAAQY 488 (559)
T ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc--------chHHHHHHHHHHHHHHhHHHHHHH
Confidence 455566665556666789999999999999999999999999876432 247899999999999999999999
Q ss_pred HHHHHHHH
Q 011692 299 CQKAISVC 306 (479)
Q Consensus 299 ~ekAL~I~ 306 (479)
|++-+.+.
T Consensus 489 yek~v~~~ 496 (559)
T KOG1155|consen 489 YEKYVEVS 496 (559)
T ss_pred HHHHHHHH
Confidence 99999854
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00022 Score=74.70 Aligned_cols=64 Identities=17% Similarity=0.100 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.-||+||+-+++.+.+|..|+....++|.+.... .-++|+-|.||..+++|+.|+..|++++.+
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N--------~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNN--------VKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCc--------hhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999987655 489999999999999999999999999865
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.8e-05 Score=84.26 Aligned_cols=50 Identities=22% Similarity=0.229 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
..|..|.-+|.-++-.|++..|-..|..+..+ +|..-.+|...|-+|...
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~ 373 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADE 373 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhh
Confidence 34788999999999999999999999999998 677777788888888764
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=9.3e-05 Score=71.45 Aligned_cols=44 Identities=36% Similarity=0.566 Sum_probs=39.2
Q ss_pred CCccCCchhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011692 52 GAIADGEREKTVEFADELMEKGTNALKESDYGEAAECFSRALEI 95 (479)
Q Consensus 52 ~~~~~~~~~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei 95 (479)
.-.+|+++.+.++.++.|...|+.+|+.|+|++|...|++||++
T Consensus 81 ~i~~deek~k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~ 124 (271)
T KOG4234|consen 81 KIFSDEEKDKAIEKADSLKKEGNELFKNGDYEEANSKYQEALES 124 (271)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHh
Confidence 34556677777889999999999999999999999999999998
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=98.04 E-value=8.5e-06 Score=57.19 Aligned_cols=41 Identities=29% Similarity=0.279 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChh
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALE 106 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe 106 (479)
|..|.++|..++.+|+|++|..+|.++++++.++||+.||+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 67899999999999999999999999999999999999995
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.6e-05 Score=84.26 Aligned_cols=133 Identities=9% Similarity=-0.027 Sum_probs=103.3
Q ss_pred HHHHHHH-HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 67 DELMEKG-TNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 67 ~~L~~~G-~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
.++..+. ...-..+....+.+.+-+++.+... -|..+++|+++|.++...+
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g----------------------- 100 (694)
T PRK15179 49 RELLQQARQVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAH----------------------- 100 (694)
T ss_pred HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcC-----------------------
Confidence 3444444 2344556666777777777775432 3667899999999998863
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.++.|..+|+.+..+
T Consensus 101 --------------------------------------------------------------~~~ea~~~l~~~~~~--- 115 (694)
T PRK15179 101 --------------------------------------------------------------RSDEGLAVWRGIHQR--- 115 (694)
T ss_pred --------------------------------------------------------------CcHHHHHHHHHHHhh---
Confidence 334456666666554
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.|+.+.++.+++.+....++|++|+..++++|.+-.. -+..|+.+|.++...|+|++|+.+|++++.
T Consensus 116 ----~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~--------~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~ 182 (694)
T PRK15179 116 ----FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS--------SAREILLEAKSWDEIGQSEQADACFERLSR 182 (694)
T ss_pred ----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC--------CHHHHHHHHHHHHHhcchHHHHHHHHHHHh
Confidence 4678899999999999999999999999999987433 369999999999999999999999999996
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.5e-05 Score=59.56 Aligned_cols=49 Identities=31% Similarity=0.478 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
.|..+..+|..++..|+|++|+.+|.+|+++ +|..+.+|+++|.+++.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~ 50 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKL 50 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHh
Confidence 3678999999999999999999999999999 899999999999999986
|
... |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=3.4e-05 Score=63.11 Aligned_cols=83 Identities=18% Similarity=0.274 Sum_probs=63.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCCCCC
Q 011692 79 ESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESS 158 (479)
Q Consensus 79 ~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~e~a 158 (479)
+|+|+.|+.+|.++++..-. .+ ....+|++|.+|+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~------------------------------------- 38 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQ------------------------------------- 38 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHT-------------------------------------
T ss_pred CccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHC-------------------------------------
Confidence 68999999999999998311 22 667888899999985
Q ss_pred cccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q 011692 159 TASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILS 238 (479)
Q Consensus 159 ~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~ 238 (479)
+++..|+++|+. ..+ .+....++.
T Consensus 39 ------------------------------------------------~~y~~A~~~~~~-~~~-------~~~~~~~~~ 62 (84)
T PF12895_consen 39 ------------------------------------------------GKYEEAIELLQK-LKL-------DPSNPDIHY 62 (84)
T ss_dssp ------------------------------------------------THHHHHHHHHHC-HTH-------HHCHHHHHH
T ss_pred ------------------------------------------------CCHHHHHHHHHH-hCC-------CCCCHHHHH
Confidence 467788877776 211 223578888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 011692 239 ALAEVALEREDIETSLSDYQKA 260 (479)
Q Consensus 239 ~LGev~le~g~yeeAl~dy~kA 260 (479)
.+|.+++++|+|++|+..|+++
T Consensus 63 l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 63 LLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999999875
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=6e-05 Score=85.52 Aligned_cols=215 Identities=15% Similarity=0.147 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH-HHHHHHHHHHHHhhhhccCCcCCC--CCCCcCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALEC-VNAYYQYGRALLYKAQEEADPLVS--VPKKEGDSQQ 141 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~-A~~y~~YG~ALl~~ar~esdvLG~--~~~~~~e~~~ 141 (479)
.+..++.+|+.++++|||++|-.+|.+++.. ++.. --.||-+|..+++.+..+..++-. +.+....
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--------~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~--- 374 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKA--------DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPN--- 374 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--------CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcc---
Confidence 5778999999999999999999999999886 3433 556677777777777666553321 1110000
Q ss_pred CCCCc-cccccccCCCCC---cc--cCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHH
Q 011692 142 GSDKD-DSVKNAVNGESS---TA--SVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKM 215 (479)
Q Consensus 142 ~~~~d-e~~~~~~~~e~a---~~--~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~ 215 (479)
+-+ -.+.+-.....+ +. ..+.-..+.......+.... =+.+. -=+..|...++..
T Consensus 375 --~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~----------------l~laq-l~e~~d~~~sL~~ 435 (1018)
T KOG2002|consen 375 --NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAW----------------LELAQ-LLEQTDPWASLDA 435 (1018)
T ss_pred --hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHH----------------HHHHH-HHHhcChHHHHHH
Confidence 000 000000000000 00 00000000000000000000 00000 0123556666788
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHcCCChh
Q 011692 216 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDS--RHIAELNFRICLCLEIGSKPQ 293 (479)
Q Consensus 216 Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~--r~iAea~~~LG~ay~~~g~~e 293 (479)
|..|+.|+..+... --..+++++|..++.+|+|..|..+|.+|+.........+. -....+-|||+.|++..+++.
T Consensus 436 ~~~A~d~L~~~~~~--ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 436 YGNALDILESKGKQ--IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHHcCCC--CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence 89999888877542 23679999999999999999999999999999664433332 122456899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 294 eAi~~~ekAL~I~k~rl~ 311 (479)
.|-+.|...+.-+..-|.
T Consensus 514 ~A~e~Yk~Ilkehp~YId 531 (1018)
T KOG2002|consen 514 VAEEMYKSILKEHPGYID 531 (1018)
T ss_pred HHHHHHHHHHHHCchhHH
Confidence 999999988876655443
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.4e-05 Score=77.49 Aligned_cols=85 Identities=13% Similarity=0.119 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCC---cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChh
Q 011692 217 DVARAIAEKHWGD---SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 293 (479)
Q Consensus 217 e~Ar~Iyek~~~~---~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~e 293 (479)
+.|+..|.+.+.. ......+|+.||.+|+..++|++|+..|++.+... |+|+...+++|+||.+|..+|+++
T Consensus 160 ~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~s~~~~dAl~klg~~~~~~g~~~ 234 (263)
T PRK10803 160 DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PKSPKAADAMFKVGVIMQDKGDTA 234 (263)
T ss_pred HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhHHHHHHHHHHHHcCCHH
Confidence 4455555554432 33457899999999999999999999999988765 578899999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISVC 306 (479)
Q Consensus 294 eAi~~~ekAL~I~ 306 (479)
+|+.+|++.+..+
T Consensus 235 ~A~~~~~~vi~~y 247 (263)
T PRK10803 235 KAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHC
Confidence 9999999888654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.9e-05 Score=83.44 Aligned_cols=118 Identities=21% Similarity=0.274 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..|.++|+..|..|||++|++.|.+||.- ...|..++|++|..+-.+
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~n--------dasc~ealfniglt~e~~------------------------ 537 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNN--------DASCTEALFNIGLTAEAL------------------------ 537 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcC--------chHHHHHHHHhcccHHHh------------------------
Confidence 778899999999999999999999999985 678999999998665332
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++|+.|+++|-.-..|+.
T Consensus 538 -------------------------------------------------------------~~ldeald~f~klh~il~- 555 (840)
T KOG2003|consen 538 -------------------------------------------------------------GNLDEALDCFLKLHAILL- 555 (840)
T ss_pred -------------------------------------------------------------cCHHHHHHHHHHHHHHHH-
Confidence 456667666555554443
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCC
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK 291 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~ 291 (479)
.-++++..|+.||--+++-.+||+.|.++..+. |++| .++.+||..|...|+
T Consensus 556 ------nn~evl~qianiye~led~aqaie~~~q~~sli-----p~dp---~ilskl~dlydqegd 607 (840)
T KOG2003|consen 556 ------NNAEVLVQIANIYELLEDPAQAIELLMQANSLI-----PNDP---AILSKLADLYDQEGD 607 (840)
T ss_pred ------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC-----CCCH---HHHHHHHHHhhcccc
Confidence 347788888888888888888888887776543 3444 345566666666665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.98 E-value=6.1e-05 Score=80.93 Aligned_cols=162 Identities=20% Similarity=0.229 Sum_probs=113.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..+...|+.+..+++|+.|+.+|.++|.-++. |++-.-+-.+=+++-...+. ..++ |..++
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt------~~~ls~lk~~Ek~~k~~e~~--a~~~--pe~A~------- 359 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRT------PDLLSKLKEAEKALKEAERK--AYIN--PEKAE------- 359 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC------HHHHHHHHHHHHHHHHHHHH--HhhC--hhHHH-------
Confidence 3556666889999999999999999999887544 55555554444444332111 0000 00000
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
+....+| +++ -.+||..|...|..|+.
T Consensus 360 ----------------------e~r~kGn-------e~F---------------------k~gdy~~Av~~YteAIk--- 386 (539)
T KOG0548|consen 360 ----------------------EEREKGN-------EAF---------------------KKGDYPEAVKHYTEAIK--- 386 (539)
T ss_pred ----------------------HHHHHHH-------HHH---------------------hccCHHHHHHHHHHHHh---
Confidence 0000000 011 12689999888887642
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
+ .|.-+..|.|.|-+|+.+++|..|+.|.++|+++ +|.....|++-|.|+..+.+|++|++.|+++++
T Consensus 387 r----~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 387 R----DPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred c----CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2 2567889999999999999999999999999999 455568999999999999999999999999998
Q ss_pred HHHH
Q 011692 305 VCKS 308 (479)
Q Consensus 305 I~k~ 308 (479)
.-..
T Consensus 455 ~dp~ 458 (539)
T KOG0548|consen 455 LDPS 458 (539)
T ss_pred cCch
Confidence 7544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0002 Score=77.11 Aligned_cols=65 Identities=25% Similarity=0.310 Sum_probs=48.0
Q ss_pred CCCCCccCCchhh-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhh
Q 011692 49 ETSGAIADGEREK-TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 49 ~~~~~~~~~~~~~-~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
+..+..+|..... ..+.|..+..+|+.+|..++|..|+.+|..++++ + .....+.+.+-++++++
T Consensus 206 ~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el--------~-~~it~~~n~aA~~~e~~ 271 (539)
T KOG0548|consen 206 NGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL--------A-TDITYLNNIAAVYLERG 271 (539)
T ss_pred CCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH--------h-hhhHHHHHHHHHHHhcc
Confidence 3444444443322 4456999999999999999999999999999999 3 44556666777777664
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.3e-05 Score=60.44 Aligned_cols=84 Identities=24% Similarity=0.265 Sum_probs=66.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|..+++.++.++ +....++..+|.++...++|++|+..|++++.+.... + .+++.+|.+|
T Consensus 14 ~~~~~A~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~---~~~~~~~~~~ 78 (100)
T cd00189 14 GDYDEALEYYEKALELD-------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-----A---KAYYNLGLAY 78 (100)
T ss_pred hcHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-----h---hHHHHHHHHH
Confidence 45666766666665442 2233789999999999999999999999998874322 2 7899999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
...+++++|+.+|++++.+
T Consensus 79 ~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 79 YKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHhHHHHHHHHHHHHcc
Confidence 9999999999999998765
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00017 Score=75.98 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=59.6
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 230 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 230 ~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
+++-+..+..+|.+++..++|++|..+|++++++... + ..|..|+.+|..+|+.++|..+|+++|.++
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~-----~----~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPD-----A----YDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-----H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4556789999999999999999999999999998532 2 557789999999999999999999998764
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00016 Score=65.29 Aligned_cols=98 Identities=26% Similarity=0.238 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
....+.+|..++..|+|++|+..|..++.. .....-...+.+.++++++..
T Consensus 48 ~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-----~~d~~l~~~a~l~LA~~~~~~------------------------ 98 (145)
T PF09976_consen 48 ALAALQLAKAAYEQGDYDEAKAALEKALAN-----APDPELKPLARLRLARILLQQ------------------------ 98 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHHHc------------------------
Confidence 456778999999999999999999999984 122222345677788888754
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|+..|+.
T Consensus 99 -------------------------------------------------------------~~~d~Al~~L~~------- 110 (145)
T PF09976_consen 99 -------------------------------------------------------------GQYDEALATLQQ------- 110 (145)
T ss_pred -------------------------------------------------------------CCHHHHHHHHHh-------
Confidence 356667666643
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKAL 261 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL 261 (479)
. ....-...++..+|+|++..|++++|+..|++||
T Consensus 111 ~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 111 I-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred c-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 1 1233456789999999999999999999999986
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.8e-05 Score=78.40 Aligned_cols=142 Identities=22% Similarity=0.215 Sum_probs=113.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcccccc
Q 011692 72 KGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKN 151 (479)
Q Consensus 72 ~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~ 151 (479)
.|+-+-..++.++|+.+|++||.+ +|....++.+.|-=+.++
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEm------------------------------ 377 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEM------------------------------ 377 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHh------------------------------
Confidence 455556678889999999999998 899999999999888876
Q ss_pred ccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcc
Q 011692 152 AVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSM 231 (479)
Q Consensus 152 ~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~ 231 (479)
.+-..|.+.+.+|..|. |
T Consensus 378 -------------------------------------------------------KNt~AAi~sYRrAvdi~-------p 395 (559)
T KOG1155|consen 378 -------------------------------------------------------KNTHAAIESYRRAVDIN-------P 395 (559)
T ss_pred -------------------------------------------------------cccHHHHHHHHHHHhcC-------c
Confidence 11223556666666553 3
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH----
Q 011692 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK---- 307 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k---- 307 (479)
.=-.+|.-||..|--++-.-=|+-+|++|+.++ |+++ ..+--||.||+..++.++||.+|.+|+..-.
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-----PnDs---Rlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-----PNDS---RLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-----CCch---HHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 345689999999999999999999999999875 3444 3466799999999999999999999998654
Q ss_pred --HHHHHHHHHHhhhc
Q 011692 308 --SRVQRLLNEVKSLG 321 (479)
Q Consensus 308 --~rl~~l~~~l~~~~ 321 (479)
-+|+.|-++++...
T Consensus 468 ~l~~LakLye~l~d~~ 483 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLN 483 (559)
T ss_pred HHHHHHHHHHHHHhHH
Confidence 38888888877653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00013 Score=83.35 Aligned_cols=126 Identities=10% Similarity=0.053 Sum_probs=103.3
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcccccccc
Q 011692 74 TNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAV 153 (479)
Q Consensus 74 ~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~ 153 (479)
.++.-.|++++|+..|.+++.+ .|..+.+|..+|.++...
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~-------------------------------- 62 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNL-------------------------------- 62 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHc--------------------------------
Confidence 4556899999999999998876 577888999999999764
Q ss_pred CCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcchH
Q 011692 154 NGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEK 233 (479)
Q Consensus 154 ~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~ 233 (479)
++++.|.+.|+.++.+ .+.-
T Consensus 63 -----------------------------------------------------g~~~~A~~~~~~al~~-------~P~~ 82 (765)
T PRK10049 63 -----------------------------------------------------KQWQNSLTLWQKALSL-------EPQN 82 (765)
T ss_pred -----------------------------------------------------CCHHHHHHHHHHHHHh-------CCCC
Confidence 3466677777766644 2344
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
..++..||.+++..+++++|+..+++++.+.. ++ +. ++.||.+|...|++++|+.+|++++.+...
T Consensus 83 ~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P-----~~---~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~ 148 (765)
T PRK10049 83 DDYQRGLILTLADAGQYDEALVKAKQLVSGAP-----DK---AN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ 148 (765)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-----CC---HH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 67888999999999999999999999998843 22 35 999999999999999999999999997653
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00023 Score=73.48 Aligned_cols=39 Identities=5% Similarity=-0.107 Sum_probs=35.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 75 NALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 75 ~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
.+...+++++|+.++.+++++ +|+...+++..|.+|..+
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L 84 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEAL 84 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHc
Confidence 456678999999999999998 899999999999999875
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00026 Score=71.88 Aligned_cols=70 Identities=16% Similarity=0.093 Sum_probs=61.8
Q ss_pred CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 229 DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 229 ~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
..+....++..+|.++..+|+|++|+..|++++.+.+.. +.+|+.||.+|...|++++|+.+|++++.+.
T Consensus 109 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~--------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~ 178 (355)
T cd05804 109 ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDD--------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTW 178 (355)
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC--------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhcc
Confidence 456677888999999999999999999999999985332 5789999999999999999999999999864
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00031 Score=79.32 Aligned_cols=135 Identities=16% Similarity=0.201 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..|+.+++.+++.|++++|..++.++... .|.+..+|+.+|.++-++|
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkq--------dp~~~~ay~tL~~IyEqrG---------------------- 187 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQ--------DPRNPIAYYTLGEIYEQRG---------------------- 187 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CccchhhHHHHHHHHHHcc----------------------
Confidence 4889999999999999999999999999998 8999999999999997762
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
|.+.++...=+|
T Consensus 188 ---------------------------------------------------------------d~eK~l~~~llA----- 199 (895)
T KOG2076|consen 188 ---------------------------------------------------------------DIEKALNFWLLA----- 199 (895)
T ss_pred ---------------------------------------------------------------cHHHHHHHHHHH-----
Confidence 233332221111
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.|+.. .--+-|..|++.+.++|++.+|+-+|.+|++...... ..+++-...|...|++..|...|.+.+.
T Consensus 200 AHL~p--~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~--------~~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 200 AHLNP--KDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW--------ELIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred HhcCC--CChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch--------HHHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 23321 2227899999999999999999999999998765442 6788889999999999999999999888
Q ss_pred HHH
Q 011692 305 VCK 307 (479)
Q Consensus 305 I~k 307 (479)
.+.
T Consensus 270 ~~p 272 (895)
T KOG2076|consen 270 LDP 272 (895)
T ss_pred hCC
Confidence 776
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00016 Score=71.88 Aligned_cols=122 Identities=21% Similarity=0.240 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcc
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de 147 (479)
-|..+|+.++..|+|..|+..|.+|+.+ .|..+.+|..+|-+|.+.|
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d~~~~~~lgaaldq~G------------------------- 148 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTDWEAWNLLGAALDQLG------------------------- 148 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCChhhhhHHHHHHHHcc-------------------------
Confidence 4456999999999999999999999998 8999999999999998763
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011692 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 227 (479)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~ 227 (479)
+++.|.--|..|+.++-
T Consensus 149 ------------------------------------------------------------r~~~Ar~ay~qAl~L~~--- 165 (257)
T COG5010 149 ------------------------------------------------------------RFDEARRAYRQALELAP--- 165 (257)
T ss_pred ------------------------------------------------------------ChhHHHHHHHHHHHhcc---
Confidence 33334444455554443
Q ss_pred CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHH
Q 011692 228 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 297 (479)
Q Consensus 228 ~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~ 297 (479)
.-..+++|||-.|+-+|+++.|...+.++.. .++.+. .+-.||+++...+|++.+|..
T Consensus 166 ----~~p~~~nNlgms~~L~gd~~~A~~lll~a~l-----~~~ad~---~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 166 ----NEPSIANNLGMSLLLRGDLEDAETLLLPAYL-----SPAADS---RVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ----CCchhhhhHHHHHHHcCCHHHHHHHHHHHHh-----CCCCch---HHHHHHHHHHhhcCChHHHHh
Confidence 3356899999999999999999988877643 233332 456799999999999988854
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=1.8e-05 Score=81.01 Aligned_cols=92 Identities=12% Similarity=0.133 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
|+|+..|.|.+.....--+.|++||.+++--++|+-++..|++||....+ .-.-|+++||||.+.--.|++.-|.
T Consensus 341 E~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~-----~~~aaDvWYNlg~vaV~iGD~nlA~ 415 (478)
T KOG1129|consen 341 EMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQ-----PGQAADVWYNLGFVAVTIGDFNLAK 415 (478)
T ss_pred HHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccC-----cchhhhhhhccceeEEeccchHHHH
Confidence 34455555554333334567889999999999999999999999888652 2345889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 011692 297 PYCQKAISVCKSRVQRL 313 (479)
Q Consensus 297 ~~~ekAL~I~k~rl~~l 313 (479)
.+|+-||.--..+-+.|
T Consensus 416 rcfrlaL~~d~~h~eal 432 (478)
T KOG1129|consen 416 RCFRLALTSDAQHGEAL 432 (478)
T ss_pred HHHHHHhccCcchHHHH
Confidence 99988876544444433
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00029 Score=70.81 Aligned_cols=104 Identities=14% Similarity=0.050 Sum_probs=79.4
Q ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCc
Q 011692 68 ELMEKGTNA-LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (479)
Q Consensus 68 ~L~~~G~~~-~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~d 146 (479)
..+..+..+ +..|+|++|+..|...+..+ +.++....++||+|.+|+..
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~------------------------- 193 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNK------------------------- 193 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHc-------------------------
Confidence 345555544 56799999999999999873 33445578999999999875
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011692 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226 (479)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~ 226 (479)
++++.|...|......|
T Consensus 194 ------------------------------------------------------------g~~~~A~~~f~~vv~~y--- 210 (263)
T PRK10803 194 ------------------------------------------------------------GKKDDAAYYFASVVKNY--- 210 (263)
T ss_pred ------------------------------------------------------------CCHHHHHHHHHHHHHHC---
Confidence 35666766655554443
Q ss_pred cCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 227 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 227 ~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
+ .++...+++..||.++..+|++++|+..|++.++...
T Consensus 211 P-~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 211 P-KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred C-CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 2 3567899999999999999999999999998877653
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0011 Score=63.54 Aligned_cols=148 Identities=17% Similarity=0.101 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..|...|..++..|+|.+|+..|.+.... -+.++....+.|++|.+++..
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~-----~P~s~~a~~A~l~la~a~y~~----------------------- 55 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDR-----YPNSPYAPQAQLMLAYAYYKQ----------------------- 55 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHT-----------------------
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHc-----------------------
Confidence 3678999999999999999999999998876 356788889999999999975
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
+++..|...++.-+..|
T Consensus 56 --------------------------------------------------------------~~y~~A~~~~~~fi~~y- 72 (203)
T PF13525_consen 56 --------------------------------------------------------------GDYEEAIAAYERFIKLY- 72 (203)
T ss_dssp --------------------------------------------------------------T-HHHHHHHHHHHHHH--
T ss_pred --------------------------------------------------------------CCHHHHHHHHHHHHHHC-
Confidence 35666766555544333
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHHhcC---------CCChhHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALERE-----------DIETSLSDYQKALTILERMVE---------PDSRHIAELNFRICL 284 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g-----------~yeeAl~dy~kAL~I~~~llg---------~d~r~iAea~~~LG~ 284 (479)
+ .++.+..++..+|.+++.+. ...+|+..|+.-+.-....-- .-...+|.--+.+|.
T Consensus 73 --P-~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~ 149 (203)
T PF13525_consen 73 --P-NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIAR 149 (203)
T ss_dssp --T-T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --C-CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34567788888888866543 334566666655543321100 002234555677888
Q ss_pred HHHcCCChhHHHHHHHHHHHHH
Q 011692 285 CLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 285 ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
-|...++|.-|+..|+..|+-+
T Consensus 150 ~Y~~~~~y~aA~~r~~~v~~~y 171 (203)
T PF13525_consen 150 FYYKRGKYKAAIIRFQYVIENY 171 (203)
T ss_dssp HHHCTT-HHHHHHHHHHHHHHS
T ss_pred HHHHcccHHHHHHHHHHHHHHC
Confidence 9999999999999888877543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00028 Score=71.75 Aligned_cols=156 Identities=15% Similarity=0.129 Sum_probs=108.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC--cCCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esd--vLG~~~~~~~e~~~~~ 143 (479)
-..|.-+|..+|...+|..|++||++.+.+ ||+.+..-++|+.+|+.-++.... |+......
T Consensus 44 rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~-------- 107 (459)
T KOG4340|consen 44 RAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLDN-------- 107 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC--------
Confidence 346788999999999999999999999887 999999999999999987665322 11000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHH----HHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKM----LDVA 219 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~----Le~A 219 (479)
+ .. -+..=.++-|..+ |--+
T Consensus 108 --~-~L-----------------------------------------------------~~~~lqLqaAIkYse~Dl~g~ 131 (459)
T KOG4340|consen 108 --P-AL-----------------------------------------------------HSRVLQLQAAIKYSEGDLPGS 131 (459)
T ss_pred --H-HH-----------------------------------------------------HHHHHHHHHHHhcccccCcch
Confidence 0 00 0000011111111 1123
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHH
Q 011692 220 RAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC 299 (479)
Q Consensus 220 r~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ 299 (479)
|.+.+..++ ...|++.+++|-+...-|+|+.|+.-|+.||+.- --.+. .-|++++|+...++|..|+.+.
T Consensus 132 rsLveQlp~--en~Ad~~in~gCllykegqyEaAvqkFqaAlqvs-----Gyqpl---lAYniALaHy~~~qyasALk~i 201 (459)
T KOG4340|consen 132 RSLVEQLPS--ENEADGQINLGCLLYKEGQYEAAVQKFQAALQVS-----GYQPL---LAYNLALAHYSSRQYASALKHI 201 (459)
T ss_pred HHHHHhccC--CCccchhccchheeeccccHHHHHHHHHHHHhhc-----CCCch---hHHHHHHHHHhhhhHHHHHHHH
Confidence 444444432 2578999999999999999999999999998762 23343 3489999999999999999887
Q ss_pred HHHH
Q 011692 300 QKAI 303 (479)
Q Consensus 300 ekAL 303 (479)
..-|
T Consensus 202 SEIi 205 (459)
T KOG4340|consen 202 SEII 205 (459)
T ss_pred HHHH
Confidence 6544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00032 Score=69.72 Aligned_cols=87 Identities=21% Similarity=0.225 Sum_probs=61.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
|+.+.|...|+.|+.+ .|.-.+++..|+.++++.|+++++...+....... +.++ ..+..||.+|
T Consensus 160 G~~~~A~~~~~~al~~-------~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~---~~~~~la~~~ 224 (280)
T PF13429_consen 160 GDPDKALRDYRKALEL-------DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDP---DLWDALAAAY 224 (280)
T ss_dssp CHHHHHHHHHHHHHHH--------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSC---CHCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHH---HHHHHHHHHh
Confidence 4566666666666544 34456688889999999999999766666555444 2333 3567889999
Q ss_pred HcCCChhHHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
..+|++++|+.+|++++.....
T Consensus 225 ~~lg~~~~Al~~~~~~~~~~p~ 246 (280)
T PF13429_consen 225 LQLGRYEEALEYLEKALKLNPD 246 (280)
T ss_dssp HHHT-HHHHHHHHHHHHHHSTT
T ss_pred cccccccccccccccccccccc
Confidence 9999999999999999876553
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=9.8e-05 Score=76.05 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
-|..+.+|..+|+.||++|+|++|++||+++..+ .|.++..|.+-+.|||.+
T Consensus 93 LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~ 144 (536)
T KOG4648|consen 93 LLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQ 144 (536)
T ss_pred HHHhhHHHHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHH
Confidence 3556788999999999999999999999999987 688889999999999987
|
|
| >KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00017 Score=84.17 Aligned_cols=162 Identities=18% Similarity=0.080 Sum_probs=135.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..|..+++.++..+++.+|+..-.+||-|.....|=.||+....|-++. |++.+..
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nla--l~~f~~~-------------------- 1029 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLA--LYEFAVK-------------------- 1029 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHH--HHHHhcc--------------------
Confidence 466777889999999999999999999999999999999999999999886 4443110
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
....|...+..|+.+..
T Consensus 1030 ---------------------------------------------------------------~~~~al~~~~ra~~l~~ 1046 (1236)
T KOG1839|consen 1030 ---------------------------------------------------------------NLSGALKSLNRALKLKL 1046 (1236)
T ss_pred ---------------------------------------------------------------CccchhhhHHHHHHhhc
Confidence 01113344445544432
Q ss_pred Hh-cCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 225 KH-WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 225 k~-~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
=. ...+|..+.+..+|+.+++-.++|+.|+.+.+.|+++.+.++++.+-..+.+|..++..+...+.+..|+.+.....
T Consensus 1047 Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~ 1126 (1236)
T KOG1839|consen 1047 LSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTY 1126 (1236)
T ss_pred cccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHH
Confidence 22 22578899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 011692 304 SVCKSRVQ 311 (479)
Q Consensus 304 ~I~k~rl~ 311 (479)
.|++..++
T Consensus 1127 ~iy~~qlg 1134 (1236)
T KOG1839|consen 1127 GIYKEQLG 1134 (1236)
T ss_pred HHHHHhhC
Confidence 99888766
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.78 E-value=7.4e-05 Score=76.57 Aligned_cols=159 Identities=16% Similarity=0.099 Sum_probs=119.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCCCCcc
Q 011692 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGSDKDD 147 (479)
Q Consensus 70 ~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~~~de 147 (479)
...|+.++..|-|.+|...|+.+|+- -++.+.|.++.++|..+-|.+..+ +|....
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q---------~~~~dTfllLskvY~ridQP~~AL~~~~~gld------------- 284 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---------FPHPDTFLLLSKVYQRIDQPERALLVIGEGLD------------- 284 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc---------CCchhHHHHHHHHHHHhccHHHHHHHHhhhhh-------------
Confidence 46899999999999999999999985 345678999999998875443331 111100
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011692 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 227 (479)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~ 227 (479)
...++.+- -=..-....|++..+.|.++|...+
T Consensus 285 -----------------------------~fP~~VT~------------------l~g~ARi~eam~~~~~a~~lYk~vl 317 (478)
T KOG1129|consen 285 -----------------------------SFPFDVTY------------------LLGQARIHEAMEQQEDALQLYKLVL 317 (478)
T ss_pred -----------------------------cCCchhhh------------------hhhhHHHHHHHHhHHHHHHHHHHHH
Confidence 00000000 0001355677788888888888887
Q ss_pred CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 228 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 228 ~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
..++..+++.-.+|.-|+-.++-+-|+.+|++-|.+-- .++ +.+.|||+|+.+.++|+-++..|++|+..
T Consensus 318 k~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-----~sp---eLf~NigLCC~yaqQ~D~~L~sf~RAlst 387 (478)
T KOG1129|consen 318 KLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-----QSP---ELFCNIGLCCLYAQQIDLVLPSFQRALST 387 (478)
T ss_pred hcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-----CCh---HHHhhHHHHHHhhcchhhhHHHHHHHHhh
Confidence 76666777888899999999999999999999998844 343 78999999999999999999999999975
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.0018 Score=64.24 Aligned_cols=62 Identities=11% Similarity=-0.020 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC 299 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ 299 (479)
++.--+.+|..|+..|+|.-|+.-|+..++-. |+.+..-++++.|..+|..+|..++|....
T Consensus 174 la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 174 LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 56666678888999999999999988887643 467788999999999999999999886654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00044 Score=65.66 Aligned_cols=36 Identities=25% Similarity=0.178 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhc
Q 011692 88 CFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (479)
Q Consensus 88 ~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~ 124 (479)
+|.+|++.....|= .+|.-++.+++.|.+|+++++.
T Consensus 6 ~FE~ark~aea~y~-~nP~DadnL~~WG~ALLELAqf 41 (186)
T PF06552_consen 6 FFEHARKKAEAAYA-KNPLDADNLTNWGGALLELAQF 41 (186)
T ss_dssp HHHHHHHHHHHHHH-H-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCcHhHHHHHHHHHHHHHHHhc
Confidence 34444444444432 2788899999999999999766
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00049 Score=79.31 Aligned_cols=150 Identities=17% Similarity=0.101 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
...+..+...+...++|++|+.+...+++. +|.-..+||.+|..+++..+.....+-+..+.
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~---------- 92 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLLNLIDS---------- 92 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhhhhhhh----------
Confidence 456777888888999999999999988887 89999999999997776655433322111000
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+. ...++...-.++..-..
T Consensus 93 -------------------------------------~~--------------------~~~~~~~ve~~~~~i~~---- 111 (906)
T PRK14720 93 -------------------------------------FS--------------------QNLKWAIVEHICDKILL---- 111 (906)
T ss_pred -------------------------------------cc--------------------cccchhHHHHHHHHHHh----
Confidence 00 01222222111121111
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
....-.+|+.||.+|-.+|++++|...|+++|++.. .=+.++.|+|..|... ++++|+.++.+|+..
T Consensus 112 ----~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~--------~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~ 178 (906)
T PRK14720 112 ----YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADR--------DNPEIVKKLATSYEEE-DKEKAITYLKKAIYR 178 (906)
T ss_pred ----hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCc--------ccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 122334899999999999999999999999999972 3368999999999999 999999999999988
Q ss_pred HH
Q 011692 306 CK 307 (479)
Q Consensus 306 ~k 307 (479)
+-
T Consensus 179 ~i 180 (906)
T PRK14720 179 FI 180 (906)
T ss_pred HH
Confidence 64
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.69 E-value=8.8e-05 Score=58.43 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=53.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 240 LAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 240 LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
|..+|+..++|+.|+..+++++.+... -...|+.+|.+|..+|+|.+|+..|++++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALELDPD--------DPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHhCcc--------cchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 568999999999999999999999433 358899999999999999999999999997643
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00048 Score=76.84 Aligned_cols=132 Identities=22% Similarity=0.175 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
-.-.+..+..+...++-++|.-|+.+|-.| -|.++..||.-|..+..++
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--------~~l~~~~~~~~G~~~~~~~----------------------- 698 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKI--------DPLSASVYYLRGLLLEVKG----------------------- 698 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhc--------chhhHHHHHHhhHHHHHHH-----------------------
Confidence 334456777888889999999999999998 4999999999999998762
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.+..|.+.|..|+.+
T Consensus 699 --------------------------------------------------------------~~~EA~~af~~Al~l--- 713 (799)
T KOG4162|consen 699 --------------------------------------------------------------QLEEAKEAFLVALAL--- 713 (799)
T ss_pred --------------------------------------------------------------hhHHHHHHHHHHHhc---
Confidence 233455555555543
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLS--DYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~--dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.|....+...||.++++.|+-.-|.. .+..+|++.... -+++|+||.++..+|+.++|.++|+.|+
T Consensus 714 ----dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n--------~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 714 ----DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLN--------HEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred ----CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCC--------HHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 45667789999999999998777777 888888885433 3999999999999999999999999998
Q ss_pred HH
Q 011692 304 SV 305 (479)
Q Consensus 304 ~I 305 (479)
.+
T Consensus 782 qL 783 (799)
T KOG4162|consen 782 QL 783 (799)
T ss_pred hh
Confidence 65
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00067 Score=71.38 Aligned_cols=80 Identities=21% Similarity=0.244 Sum_probs=68.5
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 310 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl 310 (479)
++...++-.-|.-....|+|..|-+.|..+|.|-+. +--..|.+|+|++.++..+|+..+||.-|..|+.|-...|
T Consensus 246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi 321 (486)
T KOG0550|consen 246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI 321 (486)
T ss_pred HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH
Confidence 445667778899999999999999999999999765 3345789999999999999999999999999999877766
Q ss_pred HHHH
Q 011692 311 QRLL 314 (479)
Q Consensus 311 ~~l~ 314 (479)
..|.
T Consensus 322 kall 325 (486)
T KOG0550|consen 322 KALL 325 (486)
T ss_pred HHHH
Confidence 6553
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0019 Score=63.84 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=61.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALER-EDIETSLSDYQKALTILERMVEPDSRHIA-ELNFRICLC 285 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~-g~yeeAl~dy~kAL~I~~~llg~d~r~iA-ea~~~LG~a 285 (479)
+-+.|..+|+.|..||-....- ...|.-|..||++|-.- .+|++||.+|+.|-+..+. +++...| .++.+.+.-
T Consensus 88 ~~~eAv~cL~~aieIyt~~Grf-~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~lKvA~y 163 (288)
T KOG1586|consen 88 DPEEAVNCLEKAIEIYTDMGRF-TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCLLKVAQY 163 (288)
T ss_pred ChHHHHHHHHHHHHHHHhhhHH-HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHHHHHHHH
Confidence 3456888999999999776432 23578899999999655 8999999999999988763 2332222 234444444
Q ss_pred HHcCCChhHHHHHHHH
Q 011692 286 LEIGSKPQEAIPYCQK 301 (479)
Q Consensus 286 y~~~g~~eeAi~~~ek 301 (479)
-..+++|.+||..|++
T Consensus 164 aa~leqY~~Ai~iyeq 179 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQ 179 (288)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566666666655
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00089 Score=71.66 Aligned_cols=148 Identities=19% Similarity=0.127 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 68 ELMEKGTNALKES---DYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 68 ~L~~~G~~~~~~g---dyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+.-+|..++.++ ....|..+|.+|+..+ +..|+.+.+|-.+..|++..... |..
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~-----g~~------------ 314 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALH-----GKS------------ 314 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHh-----cCC------------
Confidence 5677777776655 4567888899998221 23899999999999999876422 210
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
+...+...|.+..++|..+
T Consensus 315 -----------------------------------------------------------~~~~~~~~a~~~A~rAvel-- 333 (458)
T PRK11906 315 -----------------------------------------------------------ELELAAQKALELLDYVSDI-- 333 (458)
T ss_pred -----------------------------------------------------------CchHHHHHHHHHHHHHHhc--
Confidence 0113555666555555543
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.+.=+.++..+|-++.-.++|+.|+..|++|+.+ +|..|.+||..|+++.+.|+.++|++++++|++
T Consensus 334 -----d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 334 -----TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred -----CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 2345789999999999999999999999999988 456699999999999999999999999999998
Q ss_pred HHHHHHH
Q 011692 305 VCKSRVQ 311 (479)
Q Consensus 305 I~k~rl~ 311 (479)
+-..|++
T Consensus 401 LsP~~~~ 407 (458)
T PRK11906 401 LEPRRRK 407 (458)
T ss_pred cCchhhH
Confidence 7666655
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0006 Score=78.50 Aligned_cols=93 Identities=10% Similarity=0.067 Sum_probs=62.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|.++|+.++ ...+.-.+++..|+.++.+.+++++|+..+++++.+.... ..+..++.++
T Consensus 116 gdyd~Aiely~kaL-------~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~---------~~~l~layL~ 179 (822)
T PRK14574 116 KRWDQALALWQSSL-------KKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTV---------QNYMTLSYLN 179 (822)
T ss_pred CCHHHHHHHHHHHH-------hhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcch---------HHHHHHHHHH
Confidence 45556655555443 3334557888899999999999999999999887774431 1222233333
Q ss_pred HcCCChhHHHHHHHHHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCKSRVQRLLN 315 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k~rl~~l~~ 315 (479)
...+++.+|+..|+++++......+.+.+
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~ 208 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKN 208 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34666767999999999997654444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0002 Score=55.37 Aligned_cols=45 Identities=27% Similarity=0.428 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhh
Q 011692 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 70 ~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
+.+|..++..|+|++|+.+|.++++. +|.+..+++.+|.+++.++
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g 45 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQG 45 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcC
Confidence 46899999999999999999999997 7999999999999999863
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0008 Score=67.45 Aligned_cols=105 Identities=20% Similarity=0.188 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+.+.+..++..|||..|...|..-+.- .+..+..+++|||||.++|.++
T Consensus 141 ~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~-----YP~s~~~~nA~yWLGe~~y~qg----------------------- 192 (262)
T COG1729 141 ATKLYNAALDLYKSGDYAEAEQAFQAFIKK-----YPNSTYTPNAYYWLGESLYAQG----------------------- 192 (262)
T ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCcccchhHHHHHHHHHhcc-----------------------
Confidence 344899999999999999999999988775 4778899999999999999862
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+|..|-.+|..+.. +
T Consensus 193 --------------------------------------------------------------~y~~Aa~~f~~~~k---~ 207 (262)
T COG1729 193 --------------------------------------------------------------DYEDAAYIFARVVK---D 207 (262)
T ss_pred --------------------------------------------------------------cchHHHHHHHHHHH---h
Confidence 33334444433322 3
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
.+ .+++..+.++.||.+..++++-++|...|++.++-+
T Consensus 208 ~P-~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 208 YP-KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CC-CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 32 356778999999999999999999999998876543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.001 Score=70.27 Aligned_cols=66 Identities=12% Similarity=0.129 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
+..+..||.+++..|+|++|..+|+++..+.. .|++ +.+..||.+|...|+.++|..+|++++...
T Consensus 335 ~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~---~p~~----~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 335 CCINRALGQLLMKHGEFIEAADAFKNVAACKE---QLDA----NDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc---CCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 37889999999999999999999995444332 1122 346688999999999999999999988753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00059 Score=67.89 Aligned_cols=83 Identities=12% Similarity=0.089 Sum_probs=67.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|..|...|.+|. ...+.-...|+.||-+|...|+|+.|-..|.++|++...- ..++.|||+.|
T Consensus 114 g~~~~A~~~~rkA~-------~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~--------p~~~nNlgms~ 178 (257)
T COG5010 114 GNFGEAVSVLRKAA-------RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNE--------PSIANNLGMSL 178 (257)
T ss_pred cchHHHHHHHHHHh-------ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCC--------chhhhhHHHHH
Confidence 45556655544443 3345568899999999999999999999999999997543 37789999999
Q ss_pred HcCCChhHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~ 304 (479)
...|+++.|..++.++..
T Consensus 179 ~L~gd~~~A~~lll~a~l 196 (257)
T COG5010 179 LLRGDLEDAETLLLPAYL 196 (257)
T ss_pred HHcCCHHHHHHHHHHHHh
Confidence 999999999999877654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.004 Score=59.71 Aligned_cols=143 Identities=15% Similarity=0.134 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
...++.+|..++..|+|..|+..|.+.+... +.||.+..++|+.|.+++...+.-. ..
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P~~~~~~~A~Y~~g~~~~~~~~~~~-------~~---------- 99 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----PNSPKADYALYMLGLSYYKQIPGIL-------RS---------- 99 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-TTHHHHHHHHHHHHHHHHHHHH--------T----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHhCccch-------hc----------
Confidence 4567889999999999999999999998763 5588999999999999998742200 00
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+.|......|...|+.- ..+
T Consensus 100 ---------------------------------------------------------~~D~~~~~~A~~~~~~l---i~~ 119 (203)
T PF13525_consen 100 ---------------------------------------------------------DRDQTSTRKAIEEFEEL---IKR 119 (203)
T ss_dssp ---------------------------------------------------------T---HHHHHHHHHHHHH---HHH
T ss_pred ---------------------------------------------------------ccChHHHHHHHHHHHHH---HHH
Confidence 01123444454443333 233
Q ss_pred hcCC-------------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCCh
Q 011692 226 HWGD-------------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP 292 (479)
Q Consensus 226 ~~~~-------------~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ 292 (479)
.++. ...++.--+.+|..|+..|+|..|+..|+..|+-. |+++..-++++.|..+|..+|..
T Consensus 120 yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~ 194 (203)
T PF13525_consen 120 YPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLK 194 (203)
T ss_dssp -TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-H
T ss_pred CcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCCh
Confidence 3332 12356667788999999999999999999887764 46778889999999999999988
Q ss_pred hHH
Q 011692 293 QEA 295 (479)
Q Consensus 293 eeA 295 (479)
+.|
T Consensus 195 ~~a 197 (203)
T PF13525_consen 195 QAA 197 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 743
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00028 Score=69.69 Aligned_cols=107 Identities=20% Similarity=0.212 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
.-+..|..+|+++|.-++|..|++||++|+-+ +|-.+..|-+-..+++++-
T Consensus 8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~--------------------- 58 (284)
T KOG4642|consen 8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLK--------------------- 58 (284)
T ss_pred hHHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhh---------------------
Confidence 34778899999999999999999999999998 8999888888888887751
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
+++..-+-..+|++
T Consensus 59 ----------------------------------------------------------------~~~~v~~dcrralq-- 72 (284)
T KOG4642|consen 59 ----------------------------------------------------------------HWEPVEEDCRRALQ-- 72 (284)
T ss_pred ----------------------------------------------------------------hhhhhhhhHHHHHh--
Confidence 12222111233332
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEP 270 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~ 270 (479)
..++++..|+.||...+....|+.||..+++|+.+.+....+
T Consensus 73 -----l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~ 114 (284)
T KOG4642|consen 73 -----LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFT 114 (284)
T ss_pred -----cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCC
Confidence 245789999999999999999999999999999998876543
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00068 Score=66.15 Aligned_cols=100 Identities=21% Similarity=0.097 Sum_probs=88.2
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-----hHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-----HIAELNF 280 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r-----~iAea~~ 280 (479)
.-+++.|++.|.+|+.++.-....+..+|.++..|+.+|-+.++-++...++++||...++.+..++. .-+.++|
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 46899999999999999987766667899999999999999999999999999999999998764432 3467899
Q ss_pred HHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 281 RICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 281 ~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
-||..+.+.|++++|+.+|.+.+..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 9999999999999999999887753
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00086 Score=70.66 Aligned_cols=83 Identities=19% Similarity=0.201 Sum_probs=73.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
|+|+..|++.+...|....+-+.++++++.-|+|.++|..+++.|.++... ..|..||.++.....|.+|+
T Consensus 421 EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~---------~LH~~Lgd~~~A~Ne~Q~am 491 (564)
T KOG1174|consen 421 EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV---------NLHNHLGDIMRAQNEPQKAM 491 (564)
T ss_pred HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc---------HHHHHHHHHHHHhhhHHHHH
Confidence 667777777776677788899999999999999999999999999998654 67889999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011692 297 PYCQKAISVCKS 308 (479)
Q Consensus 297 ~~~ekAL~I~k~ 308 (479)
.||+.||.+-..
T Consensus 492 ~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 492 EYYYKALRQDPK 503 (564)
T ss_pred HHHHHHHhcCcc
Confidence 999999988643
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0025 Score=69.63 Aligned_cols=72 Identities=17% Similarity=0.275 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-------HIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r-------~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.-+.++|.+-++.+.|+|.+|++.+++|++|.++.+..+++ .|+.++.+|+.+|..+|+..+|...|...|.
T Consensus 174 syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~ 252 (652)
T KOG2376|consen 174 SYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIK 252 (652)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 45778999999999999999999999999999988765433 4899999999999999999999998876553
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0018 Score=66.44 Aligned_cols=87 Identities=21% Similarity=0.298 Sum_probs=69.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|.++|.+|+. ..+.-+.+-..||.|.+..|+|.+|+..|+..++- ++-.+.++.-.|-.||
T Consensus 194 ~~~d~A~~~l~kAlq-------a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-------n~~yl~evl~~L~~~Y 259 (389)
T COG2956 194 SDVDRARELLKKALQ-------ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-------NPEYLSEVLEMLYECY 259 (389)
T ss_pred hhHHHHHHHHHHHHh-------hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-------ChHHHHHHHHHHHHHH
Confidence 455556666655553 34566778889999999999999999999887765 4445679999999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
..+|+.++.+.+..++.+.+.
T Consensus 260 ~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHhCCHHHHHHHHHHHHHccC
Confidence 999999999999988887653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00061 Score=72.35 Aligned_cols=86 Identities=23% Similarity=0.214 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+||+.|.++|..|+ .......++++++|..+-.+|+.++|+.+|-+...|+... ++++++|+.+|
T Consensus 504 gd~dka~~~ykeal-------~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn--------~evl~qianiy 568 (840)
T KOG2003|consen 504 GDLDKAAEFYKEAL-------NNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNN--------AEVLVQIANIY 568 (840)
T ss_pred CcHHHHHHHHHHHH-------cCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhh--------HHHHHHHHHHH
Confidence 67777777665554 3444577899999999999999999999999999988754 79999999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
+.+.+..+||+.|-++..++.
T Consensus 569 e~led~aqaie~~~q~~slip 589 (840)
T KOG2003|consen 569 ELLEDPAQAIELLMQANSLIP 589 (840)
T ss_pred HHhhCHHHHHHHHHHhcccCC
Confidence 999999999999999988764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0023 Score=67.57 Aligned_cols=76 Identities=18% Similarity=0.045 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---------hcC--------------CCChhHHHHHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILER---------MVE--------------PDSRHIAELNFRICLCLE 287 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~---------llg--------------~d~r~iAea~~~LG~ay~ 287 (479)
+....++..++..+...|++++|...++++|+.... +.. ..||.-+..++.+|.++.
T Consensus 260 ~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~ 339 (398)
T PRK10747 260 RHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLM 339 (398)
T ss_pred hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence 345667788888888888888888888777763210 001 124444677899999999
Q ss_pred cCCChhHHHHHHHHHHHHH
Q 011692 288 IGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 288 ~~g~~eeAi~~~ekAL~I~ 306 (479)
..+++++|..+|++++++.
T Consensus 340 ~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 340 KHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HCCCHHHHHHHHHHHHhcC
Confidence 9999999999999999873
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0039 Score=55.53 Aligned_cols=102 Identities=21% Similarity=0.085 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCc
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~d 146 (479)
..+++.|..+-.+|+.++|+.+|.+|++. |-..+.-..+++.+|.+|..+
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~L------------------------- 51 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNL------------------------- 51 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHc-------------------------
Confidence 35788999999999999999999999883 666677788999999999876
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011692 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226 (479)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~ 226 (479)
|.++.|..+|+.++. .+
T Consensus 52 ------------------------------------------------------------G~~deA~~~L~~~~~---~~ 68 (120)
T PF12688_consen 52 ------------------------------------------------------------GRYDEALALLEEALE---EF 68 (120)
T ss_pred ------------------------------------------------------------CCHHHHHHHHHHHHH---HC
Confidence 345567777776653 33
Q ss_pred cCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011692 227 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALT 262 (479)
Q Consensus 227 ~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~ 262 (479)
++.. -...+...++.+....|++++|+..+-.+|.
T Consensus 69 p~~~-~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 69 PDDE-LNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred CCcc-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3321 1344556688899999999999988877664
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00022 Score=48.39 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
|.+|++||.+|..+++|++|+.+|++||++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 6789999999999999999999999999874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00084 Score=67.29 Aligned_cols=93 Identities=15% Similarity=0.098 Sum_probs=78.7
Q ss_pred hHHHHHHHH-----HHHHHHHHHhcC---CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 011692 208 DLDLAWKML-----DVARAIAEKHWG---DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 279 (479)
Q Consensus 208 dle~Awe~L-----e~Ar~Iyek~~~---~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~ 279 (479)
.|+.|+..+ ..|..-|..+.. .....+++|+-||+.++.+|+|+.|...|..+.+= -|+|+...+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-----~P~s~KApdal 218 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-----YPKSPKAPDAL 218 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-----CCCCCCChHHH
Confidence 788888876 567777766644 34668999999999999999999999999988772 25788888999
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 280 FRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 280 ~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
++||+|...+++.++|...|++.+.=
T Consensus 219 lKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 219 LKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999887753
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00015 Score=56.31 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=47.1
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 245 LEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 245 le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
+..|+|++|+..|++++..... -..+++.|+.||...|++++|..++++.+.....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~--------~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD--------NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT--------SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 6789999999999999988543 3589999999999999999999999887765443
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.013 Score=58.03 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
.+..+...|..++..|+|++|++.|.+++.. | +..+....+.+++|.+++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~----y-P~s~~a~~a~l~la~ayy~~ 82 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR----Y-PFGPYSQQVQLDLIYAYYKN 82 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----C-CCChHHHHHHHHHHHHHHhc
Confidence 3667889999999999999999999999885 2 23466667889999999875
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00073 Score=60.23 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+++.+|.++-..|+.++|+..|+++|.. |.+......++.+||.+|..+|++++|+..+++++.-
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 47888999999999999999999999883 4445555689999999999999999999999888754
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0054 Score=63.35 Aligned_cols=135 Identities=9% Similarity=-0.081 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 66 ADELMEKGTNALKES-DYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 66 A~~L~~~G~~~~~~g-dyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
...+..+|..+..++ +|.+|++++.+++++ +|.+..++++-|.++..+++
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~~l~~l~~--------------------- 121 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHHRRWLAEKLGP--------------------- 121 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHHHHHHcCc---------------------
Confidence 446678888888888 689999999999998 89999999999988865410
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
..+..++++++.++.+
T Consensus 122 --------------------------------------------------------------~~~~~el~~~~kal~~-- 137 (320)
T PLN02789 122 --------------------------------------------------------------DAANKELEFTRKILSL-- 137 (320)
T ss_pred --------------------------------------------------------------hhhHHHHHHHHHHHHh--
Confidence 0112234444444432
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC---CCh----hHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG---SKP----QEAIP 297 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~---g~~----eeAi~ 297 (479)
.++-..+|...|-+....++|++|+.+|.++|++-... ..+++++|.++... +++ ++++.
T Consensus 138 -----dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N--------~sAW~~R~~vl~~~~~l~~~~~~~e~el~ 204 (320)
T PLN02789 138 -----DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRN--------NSAWNQRYFVITRSPLLGGLEAMRDSELK 204 (320)
T ss_pred -----CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCc--------hhHHHHHHHHHHhccccccccccHHHHHH
Confidence 34567899999999999999999999999999985433 48899999998766 333 46788
Q ss_pred HHHHHHHHH
Q 011692 298 YCQKAISVC 306 (479)
Q Consensus 298 ~~ekAL~I~ 306 (479)
|+.++|.+.
T Consensus 205 y~~~aI~~~ 213 (320)
T PLN02789 205 YTIDAILAN 213 (320)
T ss_pred HHHHHHHhC
Confidence 887887654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0041 Score=63.13 Aligned_cols=109 Identities=21% Similarity=0.181 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+.-+|..++.+++|..|...|.+|.+| .|++.+++..||.+|++.+ |.
T Consensus 156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a-------~~-------------- 206 (287)
T COG4235 156 AEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQA-------GQ-------------- 206 (287)
T ss_pred chhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhc-------CC--------------
Confidence 677888999999999999999999999999 7999999999999999862 00
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.+-..+-.+|..|+
T Consensus 207 -------------------------------------------------------------~~ta~a~~ll~~al----- 220 (287)
T COG4235 207 -------------------------------------------------------------QMTAKARALLRQAL----- 220 (287)
T ss_pred -------------------------------------------------------------cccHHHHHHHHHHH-----
Confidence 01112333444443
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHI 275 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~i 275 (479)
...+.-+.+.+.||-.+++.|+|.+|+..++.-|+. ++++.++.
T Consensus 221 --~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~----lp~~~~rr 264 (287)
T COG4235 221 --ALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL----LPADDPRR 264 (287)
T ss_pred --hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc----CCCCCchH
Confidence 334556889999999999999999999999877765 55665443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0039 Score=65.88 Aligned_cols=135 Identities=17% Similarity=0.108 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCC
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~ 142 (479)
..++...+.+|-..+..|||..|...+.++.+. .|.-...|...|+++...
T Consensus 81 ~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~--------------------- 131 (409)
T TIGR00540 81 RRKAQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQR--------------------- 131 (409)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHC---------------------
Confidence 346888899999999999999999999887775 455455666677777654
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
++++.|.+.|..+...
T Consensus 132 ----------------------------------------------------------------g~~~~A~~~l~~a~~~ 147 (409)
T TIGR00540 132 ----------------------------------------------------------------GDEARANQHLEEAAEL 147 (409)
T ss_pred ----------------------------------------------------------------CCHHHHHHHHHHHHHh
Confidence 3455666666665422
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
.++.. ..+...++.+++..++|++|+..+++.++.. |+|+ .+++-++.+|...+++++|+.++++.
T Consensus 148 ---~p~~~---l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~-----P~~~---~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 148 ---AGNDN---ILVEIARTRILLAQNELHAARHGVDKLLEMA-----PRHK---EVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred ---CCcCc---hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 22211 2234445888888888888888877766653 3443 56777888888888888888777776
Q ss_pred HH
Q 011692 303 IS 304 (479)
Q Consensus 303 L~ 304 (479)
++
T Consensus 214 ~k 215 (409)
T TIGR00540 214 AK 215 (409)
T ss_pred HH
Confidence 64
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00094 Score=71.39 Aligned_cols=53 Identities=21% Similarity=0.311 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHH---HHHHHHHHHHHhhhhc
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECV---NAYYQYGRALLYKAQE 124 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A---~~y~~YG~ALl~~ar~ 124 (479)
..+..++++|..++.+|+|++|+.+|++|+++ .|..+ .+||++|++|..+++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--------~Pd~aeA~~A~yNLAcaya~LGr~ 128 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALEL--------NPNPDEAQAAYYNKACCHAYREEG 128 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCchHHHHHHHHHHHHHHHcCCH
Confidence 44889999999999999999999999999999 56666 4599999999998654
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0056 Score=61.00 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSH 99 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~ 99 (479)
+.-...|-+.|+++|.+|+|.+|..+|.+|+-.+..+
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L 211 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNL 211 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHH
Confidence 3445678889999999999999999999999876543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0071 Score=55.20 Aligned_cols=123 Identities=20% Similarity=0.215 Sum_probs=87.9
Q ss_pred CCCCCCCccCCch-hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhcc
Q 011692 47 NCETSGAIADGER-EKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (479)
Q Consensus 47 ~~~~~~~~~~~~~-~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~e 125 (479)
...++-.-.|++. ..-++...+|--+|..+-.-|+.+.|++.|.+|+.+ .|+.+.+|++-+.+|.-.++.
T Consensus 23 ~~~aE~~lede~~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~- 93 (175)
T KOG4555|consen 23 LIPAESDLKDEEPDTQAIKASRELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDD- 93 (175)
T ss_pred ccchhhhhcccCCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCCh-
Confidence 3444433333333 345667778888999999999999999999999999 799999999999998654100
Q ss_pred CCcCCCCCCCcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccC
Q 011692 126 ADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADED 205 (479)
Q Consensus 126 sdvLG~~~~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed 205 (479)
++.
T Consensus 94 -----------------------------------------------------------------------------e~A 96 (175)
T KOG4555|consen 94 -----------------------------------------------------------------------------EEA 96 (175)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 012
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
.+||..|+ .+-. +...-..++|.--|.+|.-+|+-+.|..+|+.|-.+--
T Consensus 97 LdDLn~Al-------eLag---~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 97 LDDLNKAL-------ELAG---DQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHH-------HhcC---ccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 24555554 3321 11222457888999999999999999999999988743
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00053 Score=47.78 Aligned_cols=32 Identities=22% Similarity=0.377 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 011692 236 ILSALAEVALEREDIETSLSDYQKALTILERM 267 (479)
Q Consensus 236 v~~~LGev~le~g~yeeAl~dy~kAL~I~~~l 267 (479)
+|.+||.+|..+|+|++|+.+|+++|.|....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 58899999999999999999999999988764
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.027 Score=58.61 Aligned_cols=138 Identities=15% Similarity=0.163 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+...+.+|+.+++.|+|..|+..|-.|++. .|.+-.+||.-|.+||..|+....+
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al--------------- 92 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAAL--------------- 92 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccch---------------
Confidence 45677889999999999999999999999997 8999999999999999885442211
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
.|| -|+|
T Consensus 93 ---------------------------------------------------------------~Dl---------~rVl- 99 (504)
T KOG0624|consen 93 ---------------------------------------------------------------QDL---------SRVL- 99 (504)
T ss_pred ---------------------------------------------------------------hhH---------HHHH-
Confidence 122 2222
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH------------HHHHHcCCC
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI------------CLCLEIGSK 291 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~L------------G~ay~~~g~ 291 (479)
...|...-+..--|.|++.+|.+++|..+|...|.--.. .-..-+++-+| -..+.-.|+
T Consensus 100 ----elKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s-----~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 100 ----ELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPS-----NGLVLEAQSKLALIQEHWVLVQQLKSASGSGD 170 (504)
T ss_pred ----hcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCC-----cchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 224566777778899999999999999999988764321 11112222222 233445678
Q ss_pred hhHHHHHHHHHHHHH
Q 011692 292 PQEAIPYCQKAISVC 306 (479)
Q Consensus 292 ~eeAi~~~ekAL~I~ 306 (479)
+..||++..+-|+|+
T Consensus 171 ~~~ai~~i~~llEi~ 185 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ 185 (504)
T ss_pred hhhHHHHHHHHHhcC
Confidence 889999988888775
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0044 Score=64.61 Aligned_cols=99 Identities=17% Similarity=0.178 Sum_probs=80.6
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD--SRHIAELNFRIC 283 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d--~r~iAea~~~LG 283 (479)
.+-|+.+++.|+.|..+-....+ .+--.+++..||.++-...+|++|+-+..+|++|-..+--.+ .-.-+.++|.|+
T Consensus 135 ls~fq~~Lesfe~A~~~A~~~~D-~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhma 213 (518)
T KOG1941|consen 135 LSVFQKALESFEKALRYAHNNDD-AMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMA 213 (518)
T ss_pred HHHHHHHHHHHHHHHHHhhccCC-ceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHH
Confidence 36789999999999888766543 333457999999999999999999999999999998764333 334578899999
Q ss_pred HHHHcCCChhHHHHHHHHHHHH
Q 011692 284 LCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 284 ~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+|.++|+.-+|.++++.|..+
T Consensus 214 ValR~~G~LgdA~e~C~Ea~kl 235 (518)
T KOG1941|consen 214 VALRLLGRLGDAMECCEEAMKL 235 (518)
T ss_pred HHHHHhcccccHHHHHHHHHHH
Confidence 9999999998888888877654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0039 Score=60.47 Aligned_cols=79 Identities=25% Similarity=0.177 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 312 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~ 312 (479)
.++.+-.=|.-++..|+|++|..-|..||.++..... ..-+.+|.|.|.|+..+++++.||.-|.+||++-......
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~---e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA 170 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST---EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA 170 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH---HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH
Confidence 3555566778888888888888888888888887754 2235678888888888888888888888888887644444
Q ss_pred HH
Q 011692 313 LL 314 (479)
Q Consensus 313 l~ 314 (479)
|.
T Consensus 171 l~ 172 (271)
T KOG4234|consen 171 LE 172 (271)
T ss_pred HH
Confidence 43
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00058 Score=45.88 Aligned_cols=31 Identities=26% Similarity=0.221 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
|++|+.||.+|..+|+|++|+.+|++++.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 6789999999999999999999999999874
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.001 Score=63.21 Aligned_cols=89 Identities=21% Similarity=0.240 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 215 MLDVARAIAEKHWGDSMEKVDILSALAEVALEREDI----------ETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 215 ~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~y----------eeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
+|+.||..++......|.-++.+++-|.+++++.+| ++|+.-|++||.|... ..+++++||.
T Consensus 6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~--------~hdAlw~lGn 77 (186)
T PF06552_consen 6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPN--------KHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCc--------hHHHHHHHHH
Confidence 456666666554333445688889999998888666 4456666666666433 3489999999
Q ss_pred HHHcCC----ChhHHHHHHHHHHHHHHHHHH
Q 011692 285 CLEIGS----KPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 285 ay~~~g----~~eeAi~~~ekAL~I~k~rl~ 311 (479)
+|..++ +..+|-.+|++|...+++-.+
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~ 108 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQKAVD 108 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHHHh
Confidence 998765 456888888888888776654
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00075 Score=45.71 Aligned_cols=32 Identities=25% Similarity=0.331 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
|.+|.++|.++..+++|++|+.+|++||+|.+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 57899999999999999999999999999864
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0037 Score=57.02 Aligned_cols=90 Identities=20% Similarity=0.203 Sum_probs=76.7
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 205 DESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 205 d~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
+.++|+.|+|.|..|+.+ -|+.+.+|++-+..+.-+++-++|+.++.+||++. |+..|.--.+|.+.|+
T Consensus 55 E~g~Ld~AlE~F~qal~l-------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~trtacqa~vQRg~ 123 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCL-------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTRTACQAFVQRGL 123 (175)
T ss_pred hccchHHHHHHHHHHHHh-------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----CccchHHHHHHHHHHH
Confidence 446777777777777655 35678999999999999999999999999999874 5567777789999999
Q ss_pred HHHcCCChhHHHHHHHHHHHH
Q 011692 285 CLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 285 ay~~~g~~eeAi~~~ekAL~I 305 (479)
.|..+|+-+.|..-|+.|-.+
T Consensus 124 lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHhCchHHHHHhHHHHHHh
Confidence 999999999999999988764
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.017 Score=60.35 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCC-hhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELA-LECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~-pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
...++.+|..+-..+||++|+-+..+|++|....- |+.| -.-+.++|.+..+|..+|
T Consensus 162 lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G--------------------- 220 (518)
T KOG1941|consen 162 LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLG--------------------- 220 (518)
T ss_pred eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhc---------------------
Confidence 34566777777777888888888888888755543 4443 344566677777776552
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
.|..|.+..+.|..+-
T Consensus 221 ----------------------------------------------------------------~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 221 ----------------------------------------------------------------RLGDAMECCEEAMKLA 236 (518)
T ss_pred ----------------------------------------------------------------ccccHHHHHHHHHHHH
Confidence 2223556666666666
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH-----HHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE-----AIPY 298 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee-----Ai~~ 298 (479)
..+. +..-.+.|...+|+||.+.|+.+.|-.-|+.|..+...+- +--.-.+++...+.|+.-..-.++ |+++
T Consensus 237 l~~G-dra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~g--drmgqv~al~g~Akc~~~~r~~~k~~~Crale~ 313 (518)
T KOG1941|consen 237 LQHG-DRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLG--DRMGQVEALDGAAKCLETLRLQNKICNCRALEF 313 (518)
T ss_pred HHhC-ChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHhhcccccchhHH
Confidence 5553 3556789999999999999999999999999999988763 111234555566666665554444 8888
Q ss_pred HHHHHHHHH
Q 011692 299 CQKAISVCK 307 (479)
Q Consensus 299 ~ekAL~I~k 307 (479)
-.++|+|-.
T Consensus 314 n~r~levA~ 322 (518)
T KOG1941|consen 314 NTRLLEVAS 322 (518)
T ss_pred HHHHHHHHH
Confidence 888888754
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0011 Score=46.09 Aligned_cols=30 Identities=13% Similarity=0.184 Sum_probs=26.3
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 278 LNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 278 a~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
+|.+||.+|..+|+|++|+.+|+++|.+.+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 588999999999999999999999997643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0025 Score=59.83 Aligned_cols=89 Identities=17% Similarity=0.088 Sum_probs=66.9
Q ss_pred hHHHHHHHH-----HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 011692 208 DLDLAWKML-----DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 282 (479)
Q Consensus 208 dle~Awe~L-----e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~L 282 (479)
-|..|+..| +-|..+|.-..-..+.-.+-++.||.++..+++|++|+..|--|..+...- | ..+|.+
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-----p---~p~f~a 111 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-----Y---RPVFFT 111 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-----C---CccchH
Confidence 344555443 445555543222223346678999999999999999999999998886533 2 348999
Q ss_pred HHHHHcCCChhHHHHHHHHHHH
Q 011692 283 CLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 283 G~ay~~~g~~eeAi~~~ekAL~ 304 (479)
|.||..+++...|+.+|+.++.
T Consensus 112 gqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 112 GQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHhCCHHHHHHHHHHHHh
Confidence 9999999999999999999987
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.012 Score=52.70 Aligned_cols=107 Identities=13% Similarity=0.046 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCC----cc-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc---CCCChhHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGD----SM-EKVDILSALAEVALEREDIETSLSDYQKALTILERMV---EPDSRHIAEL 278 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~----~~-~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ll---g~d~r~iAea 278 (479)
+-|+.|-..+..|..+-...+.. +- --|-||-.|...+..+|+|++++..-.++|..+..-- ..+-..-..+
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaa 102 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAA 102 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHH
Confidence 56888888888888776655542 11 1378999999999999999999999999999987632 2223344567
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 011692 279 NFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRL 313 (479)
Q Consensus 279 ~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l 313 (479)
-|+.+.++.-.|+.++|+..|+++.+++..|-+.+
T Consensus 103 Vfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE~ 137 (144)
T PF12968_consen 103 VFSRAVALEGLGRKEEALKEFRMAGEMIAERKGEM 137 (144)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S--
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCCC
Confidence 78999999999999999999999999988775543
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0017 Score=43.54 Aligned_cols=32 Identities=16% Similarity=0.220 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
|.+|..||.+++.+|+|++|+.+|+++|.|.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 57899999999999999999999999999854
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0015 Score=44.02 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
|.+|+.||.+|..+|++++|+.+|++++++.+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 57899999999999999999999999998754
|
... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0016 Score=43.88 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
|.+|..||.++..+|+|++|+.+|++|++|.+
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 57899999999999999999999999999875
|
... |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0085 Score=59.89 Aligned_cols=76 Identities=18% Similarity=0.174 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRL 313 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l 313 (479)
.++|.-|+++|+..++|.+|+=+|++++-|.+.. +--|.++|+++|-+|. ..++.-|.+||.+||.+...++..|
T Consensus 154 ~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n-~l~f~rlae~~Yt~gg----~eN~~~arkyy~~alkl~~~~~ral 228 (289)
T KOG3060|consen 154 QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFN-PLYFQRLAEVLYTQGG----AENLELARKYYERALKLNPKNLRAL 228 (289)
T ss_pred HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc-HHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHhChHhHHHH
Confidence 5789999999999999999999999999886532 2236778888888887 4578889999999999998776665
Q ss_pred H
Q 011692 314 L 314 (479)
Q Consensus 314 ~ 314 (479)
-
T Consensus 229 ~ 229 (289)
T KOG3060|consen 229 F 229 (289)
T ss_pred H
Confidence 3
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0055 Score=68.36 Aligned_cols=51 Identities=24% Similarity=0.404 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhh
Q 011692 64 EFADELMEKGTNA-----LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 64 ~~A~~L~~~G~~~-----~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
+..+.-+.++.++ +..++|.++..+|+++++| .|---..||.||++.+++.
T Consensus 478 Elsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 478 ELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred HHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhHHHhccHHHHHHh
Confidence 3333334444444 4569999999999999998 6777789999999999874
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.013 Score=67.99 Aligned_cols=46 Identities=7% Similarity=-0.044 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLY 120 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~ 120 (479)
..|+.+|..|-.+|++++|...|.++|++ .|+++.++.+||-.|..
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae 162 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEE 162 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHH
Confidence 47899999999999999999999999998 69999999999987754
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.018 Score=58.01 Aligned_cols=141 Identities=26% Similarity=0.237 Sum_probs=93.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCC
Q 011692 76 ALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNG 155 (479)
Q Consensus 76 ~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~ 155 (479)
.+.+||++.|.-+|+++=.+....-.+...+++..+|++|+.++...
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~--------------------------------- 49 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKK--------------------------------- 49 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcC---------------------------------
Confidence 46899999999999999998764445567899999999999998751
Q ss_pred CCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH-h--cCC---
Q 011692 156 ESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK-H--WGD--- 229 (479)
Q Consensus 156 e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek-~--~~~--- 229 (479)
+++..|..+|++|..|+++ . ...
T Consensus 50 ---------------------------------------------------~~~~~a~~wL~~a~~~l~~~~~~~~~~~~ 78 (278)
T PF08631_consen 50 ---------------------------------------------------DKYEEAVKWLQRAYDILEKPGKMDKLSPD 78 (278)
T ss_pred ---------------------------------------------------CChHHHHHHHHHHHHHHHhhhhccccCCc
Confidence 1456677777777777755 1 111
Q ss_pred -cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 230 -SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 230 -~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
..-...++..|+.+|++.+.++.... -.++|++.+.-+| +++.+- +.+|-.+.. .++.+.+.+.+.+.+.-
T Consensus 79 ~~elr~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~--~L~l~il~~-~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 79 GSELRLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVF--LLKLEILLK-SFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHH--HHHHHHHhc-cCChhHHHHHHHHHHHh
Confidence 12367899999999999999864333 3334444444443 343322 234433333 56666665555555543
|
It is also involved in sporulation []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.012 Score=62.41 Aligned_cols=173 Identities=18% Similarity=0.129 Sum_probs=114.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC-cCCCCCCCcCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD-PLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esd-vLG~~~~~~~e~~~~~~ 144 (479)
..-|..+|+.++..|||.+|+..|++++-+ .|.+-...-.||..|-..++.+.. .|+...-.
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~--------- 294 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFA--------- 294 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHh---------
Confidence 566788999999999999999999999998 899999999999998887765432 22210000
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
...-++ ..-++.... .=+.-+|..|+-+- +
T Consensus 295 ----------~~~~ta------------------~~wfV~~~~---------------l~~~K~~~rAL~~~-------e 324 (564)
T KOG1174|consen 295 ----------KVKYTA------------------SHWFVHAQL---------------LYDEKKFERALNFV-------E 324 (564)
T ss_pred ----------hhhcch------------------hhhhhhhhh---------------hhhhhhHHHHHHHH-------H
Confidence 000000 000000000 00113444444433 3
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
|.....++....|..-|...+..++.++|+..|+.|..++.--+ ++|-.|=-+|...+++.+|.-.-..++.
T Consensus 325 K~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL--------~~Y~GL~hsYLA~~~~kEA~~~An~~~~ 396 (564)
T KOG1174|consen 325 KCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRL--------EIYRGLFHSYLAQKRFKEANALANWTIR 396 (564)
T ss_pred HHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhH--------HHHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 43333456677899999999999999999999999998875433 6777777788888888777777666666
Q ss_pred HHHHHHHHH
Q 011692 305 VCKSRVQRL 313 (479)
Q Consensus 305 I~k~rl~~l 313 (479)
.+......|
T Consensus 397 ~~~~sA~~L 405 (564)
T KOG1174|consen 397 LFQNSARSL 405 (564)
T ss_pred Hhhcchhhh
Confidence 665544443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.003 Score=45.72 Aligned_cols=42 Identities=14% Similarity=0.134 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGR 116 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ 116 (479)
..++.+|..+..+|++++|+.+|++++++ +|+...+++.||+
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 35788999999999999999999999998 8999999999986
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.021 Score=60.72 Aligned_cols=75 Identities=19% Similarity=0.206 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCC
Q 011692 211 LAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS 290 (479)
Q Consensus 211 ~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g 290 (479)
.|..++..++ ...+.-+..+...+..++..++|+.|+...++|..+...-+ .+++.|+.||...|
T Consensus 218 ~AI~ll~~aL-------~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f--------~~W~~La~~Yi~~~ 282 (395)
T PF09295_consen 218 EAIRLLNEAL-------KENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEF--------ETWYQLAECYIQLG 282 (395)
T ss_pred HHHHHHHHHH-------HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH--------HHHHHHHHHHHhcC
Confidence 4555555555 22334488999999999999999999999999999987766 89999999999999
Q ss_pred ChhHHHHHHH
Q 011692 291 KPQEAIPYCQ 300 (479)
Q Consensus 291 ~~eeAi~~~e 300 (479)
+|+.|+-...
T Consensus 283 d~e~ALlaLN 292 (395)
T PF09295_consen 283 DFENALLALN 292 (395)
T ss_pred CHHHHHHHHh
Confidence 9999986554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.081 Score=58.21 Aligned_cols=81 Identities=17% Similarity=0.081 Sum_probs=65.3
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCC--------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGD--------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAE 277 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~--------~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAe 277 (479)
.++|..|.+.|+.|+.|..+.+.. ..++.-|+.-|+-|++.+|+-.+|...|...+.. .+.|.+.+|.
T Consensus 188 ~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~----~~~D~~~~Av 263 (652)
T KOG2376|consen 188 NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR----NPADEPSLAV 263 (652)
T ss_pred cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh----cCCCchHHHH
Confidence 478999999999999998877642 2457889999999999999999999999877643 4568888888
Q ss_pred HHHHHHHHHHcCC
Q 011692 278 LNFRICLCLEIGS 290 (479)
Q Consensus 278 a~~~LG~ay~~~g 290 (479)
+-+||=.+-.+..
T Consensus 264 ~~NNLva~~~d~~ 276 (652)
T KOG2376|consen 264 AVNNLVALSKDQN 276 (652)
T ss_pred Hhcchhhhccccc
Confidence 8888865544443
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.034 Score=63.40 Aligned_cols=127 Identities=19% Similarity=0.172 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
...-|+..+..+...|+|.+|+.+|...+..- --.++.+|+..|+||..+
T Consensus 413 ~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~-------~~~~~~vw~~~a~c~~~l----------------------- 462 (895)
T KOG2076|consen 413 DVDLYLDLADALTNIGKYKEALRLLSPITNRE-------GYQNAFVWYKLARCYMEL----------------------- 462 (895)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-------cccchhhhHHHHHHHHHH-----------------------
Confidence 45667888888888999999999998887641 224578899999999876
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
+.++.|.+ .|+
T Consensus 463 --------------------------------------------------------------~e~e~A~e-------~y~ 473 (895)
T KOG2076|consen 463 --------------------------------------------------------------GEYEEAIE-------FYE 473 (895)
T ss_pred --------------------------------------------------------------hhHHHHHH-------HHH
Confidence 12344444 444
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC--------ChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD--------SRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d--------~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
+.+...|...++...|+.++..+|++++|++ +...++.++ ....+...++.+.+|...|+.++=+
T Consensus 474 kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalE-------tL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 474 KVLILAPDNLDARITLASLYQQLGNHEKALE-------TLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHhcCCCchhhhhhHHHHHHhcCCHHHHHH-------HHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 4444456788999999999999999996554 444444444 3445677799999999999988733
Q ss_pred H
Q 011692 297 P 297 (479)
Q Consensus 297 ~ 297 (479)
.
T Consensus 547 ~ 547 (895)
T KOG2076|consen 547 N 547 (895)
T ss_pred H
Confidence 3
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.069 Score=46.27 Aligned_cols=172 Identities=24% Similarity=0.166 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC--cCCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esd--vLG~~~~~~~e~~~~~ 143 (479)
...+...+..+...+++..+...+..++.. ...+.....|+.+|..+...+..... .+......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 124 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL-------- 124 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC--------
Confidence 567778889999999999999999999986 33677888888888888876432111 00000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCcc-ccc-cccCcChHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGEN-VAE-ADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~-~~~-~~ed~~dle~Awe~Le~Ar~ 221 (479)
.. .... ... ... .....++++.|...+..+..
T Consensus 125 -------------~~----------------~~~~-----------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 158 (291)
T COG0457 125 -------------DP----------------DPDL-----------------AEALLALGALYELGDYEEALELYEKALE 158 (291)
T ss_pred -------------CC----------------Ccch-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 00 0000 000 000 01133566666666666622
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
.... .......+..++..+...+++..|+..|.+++.+.... ....++.++.+|...+++.+|+.++.+
T Consensus 159 -~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~ 227 (291)
T COG0457 159 -LDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLYLKLGKYEEALEYYEK 227 (291)
T ss_pred -cCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 1100 13567788888888999999999999999999998764 358899999999999999999999999
Q ss_pred HHHHHHH
Q 011692 302 AISVCKS 308 (479)
Q Consensus 302 AL~I~k~ 308 (479)
++.....
T Consensus 228 ~~~~~~~ 234 (291)
T COG0457 228 ALELDPD 234 (291)
T ss_pred HHhhCcc
Confidence 9988764
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.035 Score=64.27 Aligned_cols=127 Identities=9% Similarity=-0.019 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
...+..+|..+..+|+|++|+++|.+++++ .|....+|+.++.++...
T Consensus 102 ~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~------------------------ 149 (822)
T PRK14574 102 SRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADA------------------------ 149 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhc------------------------
Confidence 445666788999999999999999999998 788888886443333221
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+..+.|++.++.+....
T Consensus 150 -------------------------------------------------------------~q~~eAl~~l~~l~~~d-- 166 (822)
T PRK14574 150 -------------------------------------------------------------GRGGVVLKQATELAERD-- 166 (822)
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHhcccC--
Confidence 23445555554443321
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
+. ...+..++.++...+++.+|+..|++++++.... .+.++.+-.++...|-...|++..++
T Consensus 167 -----p~-~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n--------~e~~~~~~~~l~~~~~~~~a~~l~~~ 228 (822)
T PRK14574 167 -----PT-VQNYMTLSYLNRATDRNYDALQASSEAVRLAPTS--------EEVLKNHLEILQRNRIVEPALRLAKE 228 (822)
T ss_pred -----cc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHcCCcHHHHHHHHh
Confidence 22 2334556666666888877999999999885432 36677777888888877777776664
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.032 Score=49.96 Aligned_cols=97 Identities=23% Similarity=0.177 Sum_probs=72.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCC---------------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGD---------------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD 271 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~---------------~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d 271 (479)
++...+.+.|+.|+.+|.-..-. ......++..|+..+...|+|++|+..+++++.+..-
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~----- 94 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALDPY----- 94 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-----
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-----
Confidence 46677788888888888533110 1235688999999999999999999999999998532
Q ss_pred ChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 272 SRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 272 ~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
--.+|..|-.+|..+|++.+|+.+|++....+...++
T Consensus 95 ---~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 95 ---DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp ----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred ---CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 2478889999999999999999999998877666554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.13 Score=44.64 Aligned_cols=95 Identities=23% Similarity=0.140 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 210 DLAWKMLDVARAIAEKHWGDSMEKVDILSALAE-VALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 210 e~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGe-v~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
..++..+..+..++.+...........+..++. ++...++|+.|+..|.+++.+... ....+..++.++..+..
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~ 179 (291)
T COG0457 105 LEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPE-----LNELAEALLALGALLEA 179 (291)
T ss_pred HHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-----ccchHHHHHHhhhHHHH
Confidence 333334455555555554321121233444444 899999999999999999553221 23456777888888899
Q ss_pred CCChhHHHHHHHHHHHHHHHH
Q 011692 289 GSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 289 ~g~~eeAi~~~ekAL~I~k~r 309 (479)
.++++.|+.++.+++.+....
T Consensus 180 ~~~~~~a~~~~~~~~~~~~~~ 200 (291)
T COG0457 180 LGRYEEALELLEKALKLNPDD 200 (291)
T ss_pred hcCHHHHHHHHHHHHhhCccc
Confidence 999999999999999887773
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.46 Score=49.31 Aligned_cols=46 Identities=22% Similarity=0.230 Sum_probs=39.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhh
Q 011692 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQ 123 (479)
Q Consensus 70 ~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar 123 (479)
.-.|--++-..+-++|+++|.+.++. .|+..++.+-+|+.+...|.
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGE 84 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGE 84 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcch
Confidence 34677788889999999999999985 89999999999998887653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.046 Score=51.42 Aligned_cols=101 Identities=10% Similarity=0.051 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
+-+....+...|..+|.+|+|++|..+|.-.|-+ .|-+.+.++.+|.++..+
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~-------------------- 84 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLK-------------------- 84 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHH--------------------
Confidence 3456778889999999999999999999988875 555666666666666554
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
..|+.|...|-+|..
T Consensus 85 -----------------------------------------------------------------k~y~~Ai~~Y~~A~~ 99 (165)
T PRK15331 85 -----------------------------------------------------------------KQFQKACDLYAVAFT 99 (165)
T ss_pred -----------------------------------------------------------------HHHHHHHHHHHHHHH
Confidence 367888888888876
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALT 262 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~ 262 (479)
+-...+ . .++.+|.+++.+++...|+..|+.++.
T Consensus 100 l~~~dp--~-----p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 100 LLKNDY--R-----PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cccCCC--C-----ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 643222 2 377889999999999999999998877
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.024 Score=52.09 Aligned_cols=76 Identities=13% Similarity=0.100 Sum_probs=58.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|..|.+.|+.-+ .+.+. .+..-++...||.+|...++|+.|+..|++-+++. |.|+.+.-++|.+|+++
T Consensus 24 ~~Y~~A~~~le~L~---~ryP~-g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-----P~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 24 GNYEEAIKQLEALD---TRYPF-GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-----PTHPNVDYAYYMRGLSY 94 (142)
T ss_pred CCHHHHHHHHHHHH---hcCCC-CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCCCccHHHHHHHHHH
Confidence 45555555444322 23332 23456789999999999999999999999988874 68999999999999999
Q ss_pred HcCCC
Q 011692 287 EIGSK 291 (479)
Q Consensus 287 ~~~g~ 291 (479)
..+..
T Consensus 95 ~~~~~ 99 (142)
T PF13512_consen 95 YEQDE 99 (142)
T ss_pred HHHhh
Confidence 98764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.12 Score=56.91 Aligned_cols=65 Identities=22% Similarity=0.103 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
+..+|+.|+.+|...|+|++|+.+..+||.. .|.+.+.|+-.|.+|...|++.+|..+++.|-.+
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999987 4566799999999999999999999999988665
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0063 Score=47.07 Aligned_cols=43 Identities=28% Similarity=0.343 Sum_probs=38.2
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccC
Q 011692 76 ALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEA 126 (479)
Q Consensus 76 ~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~es 126 (479)
++..|+|++|+.+|.+++.. +|...++++.||.+|+..++.+.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~ 43 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDE 43 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHH
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHH
Confidence 46789999999999999998 89999999999999999977643
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.0088 Score=62.97 Aligned_cols=81 Identities=19% Similarity=0.249 Sum_probs=65.2
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-------hhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDS-------RHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~-------r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
..|...-.-|.+|+..|+|..|+..|++|+.++..-.+.+. -..--+|.||+.||..+++|.+|+.+|.++|.
T Consensus 206 ~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe 285 (397)
T KOG0543|consen 206 EAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE 285 (397)
T ss_pred HHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 35677778899999999999999999999999885544321 11235799999999999999999999999998
Q ss_pred HHHHHHHH
Q 011692 305 VCKSRVQR 312 (479)
Q Consensus 305 I~k~rl~~ 312 (479)
+-......
T Consensus 286 ~~~~N~KA 293 (397)
T KOG0543|consen 286 LDPNNVKA 293 (397)
T ss_pred cCCCchhH
Confidence 76544433
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.037 Score=46.70 Aligned_cols=68 Identities=13% Similarity=0.109 Sum_probs=58.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 242 EVALEREDIETSLSDYQKALTILERMVEPD-SRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 242 ev~le~g~yeeAl~dy~kAL~I~~~llg~d-~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
-..+..++|..|++.+.+.+++........ ......++.+++.++...|++++|+..++.||.+.+..
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~ 74 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN 74 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999998876544 23577789999999999999999999999999986654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.11 Score=57.30 Aligned_cols=137 Identities=20% Similarity=0.124 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
...++-++..+...|+|++|.++..+|++. .|-+.+.|+.-|++|-+.
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--------tPt~~ely~~KarilKh~------------------------ 241 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEH--------TPTLVELYMTKARILKHA------------------------ 241 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHC------------------------
Confidence 567777888888999999999999999997 799999999999999664
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
|++..|.++++.||.+
T Consensus 242 -------------------------------------------------------------G~~~~Aa~~~~~Ar~L--- 257 (517)
T PF12569_consen 242 -------------------------------------------------------------GDLKEAAEAMDEAREL--- 257 (517)
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHhC---
Confidence 5788899999999864
Q ss_pred hcCCcchHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc-CC-CC---hhHHHHHHHHHHHHHcCCChhHHHHH
Q 011692 226 HWGDSMEKVD--ILSALAEVALEREDIETSLSDYQKALTILERMV-EP-DS---RHIAELNFRICLCLEIGSKPQEAIPY 298 (479)
Q Consensus 226 ~~~~~~~~A~--v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ll-g~-d~---r~iAea~~~LG~ay~~~g~~eeAi~~ 298 (479)
+.++ +-...+..+++.|++++|+..... +-+.- ++ .+ -+-..-....|.+|.+.|+|..|+..
T Consensus 258 ------D~~DRyiNsK~aKy~LRa~~~e~A~~~~~~----Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~ 327 (517)
T PF12569_consen 258 ------DLADRYINSKCAKYLLRAGRIEEAEKTASL----FTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKR 327 (517)
T ss_pred ------ChhhHHHHHHHHHHHHHCCCHHHHHHHHHh----hcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 2232 334677888899999988765432 21111 11 11 11223335579999999999999999
Q ss_pred HHHHHHHHHH
Q 011692 299 CQKAISVCKS 308 (479)
Q Consensus 299 ~ekAL~I~k~ 308 (479)
|...+.++..
T Consensus 328 ~~~v~k~f~~ 337 (517)
T PF12569_consen 328 FHAVLKHFDD 337 (517)
T ss_pred HHHHHHHHHH
Confidence 9999988854
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.53 Score=47.25 Aligned_cols=94 Identities=22% Similarity=0.120 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKV-DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 285 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A-~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 285 (479)
..|..+..++++|..+|..+.. ++.| .++..-|. .+++-+-+.|+..|+++|.+.+.- ...+.--+.|-+++.+
T Consensus 85 ~klsEvvdl~eKAs~lY~E~Gs--pdtAAmaleKAak-~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~ 159 (308)
T KOG1585|consen 85 SKLSEVVDLYEKASELYVECGS--PDTAAMALEKAAK-ALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRV 159 (308)
T ss_pred HHhHHHHHHHHHHHHHHHHhCC--cchHHHHHHHHHH-HhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhH
Confidence 4566777888999999988753 3443 44444443 468888999999999999998753 1233345667778999
Q ss_pred HHcCCChhHHHHHHHHHHHH
Q 011692 286 LEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 286 y~~~g~~eeAi~~~ekAL~I 305 (479)
|-+..+|.+|...|.+-..+
T Consensus 160 lVrl~kf~Eaa~a~lKe~~~ 179 (308)
T KOG1585|consen 160 LVRLEKFTEAATAFLKEGVA 179 (308)
T ss_pred hhhhHHhhHHHHHHHHhhhH
Confidence 99999999998888775443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0096 Score=43.07 Aligned_cols=42 Identities=14% Similarity=0.003 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
.++..||.+|..+|++++|+..|+++|++... + ..+++.||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-----~---~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-----D---PEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-----C---HHHHHHhhh
Confidence 47899999999999999999999999998543 3 366666664
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.019 Score=44.95 Aligned_cols=52 Identities=19% Similarity=0.274 Sum_probs=44.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
++++.|+++++.++.+ .|.....|..+|.++..+|+|.+|+.+|+++|++.+
T Consensus 9 ~~~~~A~~~~~~~l~~-------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 9 EDYEEALEVLERALEL-------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CCHHHHHHHHHHHHHh-------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 6788888888888776 344677899999999999999999999999997654
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.022 Score=56.61 Aligned_cols=84 Identities=18% Similarity=0.099 Sum_probs=70.1
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
.-|...|.+.+--.|..+.-|.+-+..|+.+.+|+....+.++||++.. .++..||-||.++.....|++||
T Consensus 27 ~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~--------N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 27 DDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP--------NLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred chHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh--------HHHHHHHHHHHHHHhhccccHHH
Confidence 3344455554444567788899999999999999999999999999854 45799999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011692 297 PYCQKAISVCKS 308 (479)
Q Consensus 297 ~~~ekAL~I~k~ 308 (479)
.++++|..+.+.
T Consensus 99 ~~Lqra~sl~r~ 110 (284)
T KOG4642|consen 99 KVLQRAYSLLRE 110 (284)
T ss_pred HHHHHHHHHHhc
Confidence 999999877653
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.02 Score=64.06 Aligned_cols=85 Identities=19% Similarity=0.155 Sum_probs=70.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.+|+.+...|+.+..|+ +-...+|+.+|-+.+..+++..|+.+|..|+.+.. +| ++++.||+.+|
T Consensus 499 ~~fs~~~~hle~sl~~n-------plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~P-----d~---~eaWnNls~ay 563 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEIN-------PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEP-----DN---AEAWNNLSTAY 563 (777)
T ss_pred hhHHHHHHHHHHHhhcC-------ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCC-----Cc---hhhhhhhhHHH
Confidence 57777877777776654 34567999999999999999999999999998754 33 59999999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...++..+|...++.|+..-
T Consensus 564 i~~~~k~ra~~~l~EAlKcn 583 (777)
T KOG1128|consen 564 IRLKKKKRAFRKLKEALKCN 583 (777)
T ss_pred HHHhhhHHHHHHHHHHhhcC
Confidence 99999888888888877654
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.27 Score=51.10 Aligned_cols=106 Identities=20% Similarity=0.184 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.|..+-..|+-||+.++|-.|+++|++.|..- .+ +-.-++.+|++-+-|-++++
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k---c~-D~dlnavLY~NRAAa~~~l~---------------------- 133 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKK---CA-DPDLNAVLYTNRAAAQLYLG---------------------- 133 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc---CC-CccHHHHHHhhHHHHHHHHH----------------------
Confidence 68899999999999999999999999999863 22 23456788888888877762
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
+|-.|+.=..+||.
T Consensus 134 ---------------------------------------------------------------NyRs~l~Dcs~al~--- 147 (390)
T KOG0551|consen 134 ---------------------------------------------------------------NYRSALNDCSAALK--- 147 (390)
T ss_pred ---------------------------------------------------------------HHHHHHHHHHHHHh---
Confidence 33334333333433
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 266 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ 266 (479)
..+..+.+|.+=+.+++++++|..|+...+..|.|..+
T Consensus 148 ----~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e 185 (390)
T KOG0551|consen 148 ----LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE 185 (390)
T ss_pred ----cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 24567889999999999999999999999988887654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.44 Score=47.80 Aligned_cols=84 Identities=15% Similarity=0.117 Sum_probs=60.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCc-------------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDS-------------MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH 274 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~-------------~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~ 274 (479)
|-..+.+.+.....+..+.++.. ..+|.-=+.+|..|++.+.|--|+.-++..++-. ++.+.
T Consensus 128 Dq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y-----~~t~~ 202 (254)
T COG4105 128 DQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENY-----PDTSA 202 (254)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc-----ccccc
Confidence 34444444444555555555421 2345556788999999999999999999877653 35667
Q ss_pred HHHHHHHHHHHHHcCCChhHHH
Q 011692 275 IAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 275 iAea~~~LG~ay~~~g~~eeAi 296 (479)
+=++|..|..+|..+|-.++|-
T Consensus 203 ~~eaL~~l~eaY~~lgl~~~a~ 224 (254)
T COG4105 203 VREALARLEEAYYALGLTDEAK 224 (254)
T ss_pred hHHHHHHHHHHHHHhCChHHHH
Confidence 7799999999999999988874
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.1 Score=43.94 Aligned_cols=77 Identities=19% Similarity=0.077 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDS--MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~--~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
+||..|.+.|.............. .....+..++|.++...|++++|+..+++|++|.++.- |.+.++.++..|..
T Consensus 12 ~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~--D~~~l~~al~~~~~ 89 (94)
T PF12862_consen 12 GDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG--DRRCLAYALSWLAN 89 (94)
T ss_pred CCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHH
Confidence 688999888888877766654422 24567789999999999999999999999999999875 55556666655544
Q ss_pred H
Q 011692 285 C 285 (479)
Q Consensus 285 a 285 (479)
.
T Consensus 90 l 90 (94)
T PF12862_consen 90 L 90 (94)
T ss_pred H
Confidence 4
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.089 Score=51.90 Aligned_cols=53 Identities=25% Similarity=0.130 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhc
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~ 124 (479)
++|.-|+.+|..+-..|=+.-|.--|.++|.| .|.++++|+++|.-|+.-+..
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~f 115 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNF 115 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccc
Confidence 57899999999999999999999999999999 799999999999888876443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.093 Score=52.19 Aligned_cols=97 Identities=18% Similarity=0.129 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHHHHHhc-------------------CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 011692 208 DLDLAWKMLDVARAIAEKHW-------------------GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMV 268 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~-------------------~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ll 268 (479)
.++.|-++|..|..+|.-.- +..-+.+.+|.--+..|-. .+-.+|+.+++++++|.-..-
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhh
Confidence 56666677766666663221 1122345555555554433 478888888888888887653
Q ss_pred CCCChhHHHHHHHHHHHHHcC-CChhHHHHHHHHHHHHHH
Q 011692 269 EPDSRHIAELNFRICLCLEIG-SKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 269 g~d~r~iAea~~~LG~ay~~~-g~~eeAi~~~ekAL~I~k 307 (479)
.-++-|.-|..||-.|+.. .++++||.||++|-+.++
T Consensus 108 --rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk 145 (288)
T KOG1586|consen 108 --RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYK 145 (288)
T ss_pred --HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHc
Confidence 2344566677788888765 788888888888776664
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.13 Score=55.56 Aligned_cols=128 Identities=13% Similarity=-0.002 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
.....+.+...|..|+|+.|...+...+.. +|.+...+-..|..+++.
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~------------------------ 353 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEA------------------------ 353 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc------------------------
Confidence 456788899999999999999999985443 788888888888888764
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+....|.+.|+.++..+
T Consensus 354 -------------------------------------------------------------nk~~~A~e~~~kal~l~-- 370 (484)
T COG4783 354 -------------------------------------------------------------NKAKEAIERLKKALALD-- 370 (484)
T ss_pred -------------------------------------------------------------CChHHHHHHHHHHHhcC--
Confidence 23344666666666442
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
+...-...++|..++..|++.+|+..++..+.= .+.-+..|+.|+.+|..+|+..+|...+-.
T Consensus 371 -----P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~--------~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 371 -----PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFN--------DPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred -----CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhc--------CCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 233557789999999999999888777665432 222246677777777777776666555433
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.3 Score=55.21 Aligned_cols=78 Identities=9% Similarity=0.029 Sum_probs=51.0
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
+.|+.+|.+.... -..+|+.|...|...|++++|+..|++.+.. -+.|+ ..+|..|-.+|...|.+++|.
T Consensus 377 ~~A~~vf~~m~~~---d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~---g~~Pd----~~T~~~ll~a~~~~g~~~~a~ 446 (697)
T PLN03081 377 EDARNVFDRMPRK---NLISWNALIAGYGNHGRGTKAVEMFERMIAE---GVAPN----HVTFLAVLSACRYSGLSEQGW 446 (697)
T ss_pred HHHHHHHHhCCCC---CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCC----HHHHHHHHHHHhcCCcHHHHH
Confidence 4444455444321 2357889999999999999999988885532 22233 245666667777777777777
Q ss_pred HHHHHHHH
Q 011692 297 PYCQKAIS 304 (479)
Q Consensus 297 ~~~ekAL~ 304 (479)
.+|+...+
T Consensus 447 ~~f~~m~~ 454 (697)
T PLN03081 447 EIFQSMSE 454 (697)
T ss_pred HHHHHHHH
Confidence 77766553
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.052 Score=55.25 Aligned_cols=77 Identities=12% Similarity=0.051 Sum_probs=60.5
Q ss_pred CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh------------------------------cCCCChhHHHH
Q 011692 229 DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM------------------------------VEPDSRHIAEL 278 (479)
Q Consensus 229 ~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~l------------------------------lg~d~r~iAea 278 (479)
.+|.-++-|..||.+|+.+++|..|+.-|.+|++|.-.. +.-||-. ..+
T Consensus 151 ~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~-ira 229 (287)
T COG4235 151 QNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPAN-IRA 229 (287)
T ss_pred hCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc-HHH
Confidence 356678899999999999999999999999999875431 1112222 356
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 279 NFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 279 ~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
++-||+.+..+|+|.+|+..+++-|++.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 7889999999999999999998877553
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.12 Score=60.00 Aligned_cols=146 Identities=14% Similarity=0.062 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCc
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~d 146 (479)
.....+|-.++.-+++..|+..|+-||++ .|.-..++.-+|.+|...||+..
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~-------------------- 614 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSH-------------------- 614 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceeh--------------------
Confidence 34455888899999999999999999998 89999999999999998765522
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011692 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226 (479)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~ 226 (479)
|..++.+|-.
T Consensus 615 -----------------------------------------------------------------AlKvF~kAs~----- 624 (1238)
T KOG1127|consen 615 -----------------------------------------------------------------ALKVFTKASL----- 624 (1238)
T ss_pred -----------------------------------------------------------------HHHhhhhhHh-----
Confidence 2333333322
Q ss_pred cCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 227 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 227 ~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
..|.-.-+.+..+.+.+.+|.|..|+.-|+.-+.-+.... +-.-.+|++|.+++..+...|=+.+|..+|+++|++|
T Consensus 625 --LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~-~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 625 --LRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLER-TGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred --cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 1233444566788888999999999999988776665433 2334589999999999999999999999999999999
Q ss_pred HHHHHHH
Q 011692 307 KSRVQRL 313 (479)
Q Consensus 307 k~rl~~l 313 (479)
.-.|.+.
T Consensus 702 ~~~l~h~ 708 (1238)
T KOG1127|consen 702 IVSLIHS 708 (1238)
T ss_pred HHHHHHh
Confidence 8887765
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.39 Score=54.96 Aligned_cols=56 Identities=21% Similarity=0.192 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
+++|..|..+-++|--++++=+++..+++|++|.. ++-.-| .-..||+|+.-|-..
T Consensus 816 lEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE-~~DRiH--Lr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 816 LEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAE-TKDRIH--LRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHh-hcccee--hhhhHHHHHHHHHhh
Confidence 56788888888888888888889999999999853 333333 457899998877544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.065 Score=59.44 Aligned_cols=47 Identities=13% Similarity=0.142 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
..|+.+.-++|..++|..........|.- +|+.++.+-..|-.|.-+
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~l 54 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCL 54 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcc
Confidence 36888999999999999999988888873 566777787888777655
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.19 Score=54.24 Aligned_cols=79 Identities=16% Similarity=0.227 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 209 LDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 209 le~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
++.|...|++|+. ..|+.|.+|..+|.+..-.|+.++|+.++++||++ +-++++-...+|.+-...
T Consensus 354 ~~~a~~~f~rA~~-------L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL-------sP~~~~~~~~~~~~~~~~ 419 (458)
T PRK11906 354 AKVSHILFEQAKI-------HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL-------EPRRRKAVVIKECVDMYV 419 (458)
T ss_pred hhhHHHHHHHHhh-------cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-------CchhhHHHHHHHHHHHHc
Confidence 4445555666654 36789999999999999999999999999999988 445577888888884556
Q ss_pred CCChhHHHHHHHH
Q 011692 289 GSKPQEAIPYCQK 301 (479)
Q Consensus 289 ~g~~eeAi~~~ek 301 (479)
....++||..|-+
T Consensus 420 ~~~~~~~~~~~~~ 432 (458)
T PRK11906 420 PNPLKNNIKLYYK 432 (458)
T ss_pred CCchhhhHHHHhh
Confidence 6778899988854
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.14 Score=59.44 Aligned_cols=53 Identities=17% Similarity=0.128 Sum_probs=37.3
Q ss_pred hhHHHHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 61 KTVEFADELMEKGTNA-----LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~-----~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
+.+..+.-++..+..+ +..++-..|..+|=+|+.+ .+.+|.+|-.+|..|...
T Consensus 448 k~mdva~~~~~e~~~~w~a~~~~rK~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~ 505 (1238)
T KOG1127|consen 448 KMMDVALLLECENSEFWVALGCMRKNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDS 505 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHH
Confidence 3444444444555444 3456788888888888888 688899999999888765
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.37 Score=57.48 Aligned_cols=86 Identities=20% Similarity=0.235 Sum_probs=59.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|+++|+..+.. +..+ -..+|+.|...|...|++++|+..|++.... -+.++ ..+|..|-.+|
T Consensus 663 G~~eeA~~l~~eM~k~-----G~~p-d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~---g~~Pd----vvtyN~LI~gy 729 (1060)
T PLN03218 663 GDLDKAFEILQDARKQ-----GIKL-GTVSYSSLMGACSNAKNWKKALELYEDIKSI---KLRPT----VSTMNALITAL 729 (1060)
T ss_pred CCHHHHHHHHHHHHHc-----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHH
Confidence 5566666665554321 1111 3568999999999999999999888875432 12222 36688899999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
...|++++|+.+|++....
T Consensus 730 ~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 730 CEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHc
Confidence 9999999999999876543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.28 Score=53.02 Aligned_cols=41 Identities=24% Similarity=0.222 Sum_probs=23.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 73 GTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 73 G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
|..++..+++.+|.+.|.+++.+ .|....+.++||.+|+..
T Consensus 347 ~~i~~~~nk~~~A~e~~~kal~l--------~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 347 GDILLEANKAKEAIERLKKALAL--------DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHcCChHHHHHHHHHHHhc--------CCCccHHHHHHHHHHHhc
Confidence 44455556666666666666555 354455555666666543
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.25 Score=55.80 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
+.+|..|-..+...|+++.|...+++.+.+. +++ ..+|..|..+|...|++++|.+.++.
T Consensus 494 ~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-----p~~---~~~y~~L~~~y~~~G~~~~A~~v~~~ 553 (697)
T PLN03081 494 VNMWAALLTACRIHKNLELGRLAAEKLYGMG-----PEK---LNNYVVLLNLYNSSGRQAEAAKVVET 553 (697)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-----CCC---CcchHHHHHHHHhCCCHHHHHHHHHH
Confidence 4467777777777777777777666654332 222 35678888888899998888877755
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.015 Score=36.14 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+|+++|.+|...+++++|+.+|++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 57899999999999999999999999865
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.013 Score=40.57 Aligned_cols=30 Identities=23% Similarity=0.490 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhcc
Q 011692 88 CFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125 (479)
Q Consensus 88 ~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~e 125 (479)
+|.+|+++ +|..+.+|++||.+|+..|+.+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~ 30 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYE 30 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHH
Confidence 58899998 8999999999999999987653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.0087 Score=41.37 Aligned_cols=33 Identities=24% Similarity=0.147 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 256 DYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 256 dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
.|++||++.. .-+.+|++||.+|...|++++|+
T Consensus 1 ~y~kAie~~P--------~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNP--------NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCC--------CCHHHHHHHHHHHHHCcCHHhhc
Confidence 3778888753 33699999999999999999986
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.12 Score=53.60 Aligned_cols=96 Identities=17% Similarity=0.160 Sum_probs=77.5
Q ss_pred cCcChHHHHHHHHHHHHHHHHHhcC----CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 011692 204 EDESDLDLAWKMLDVARAIAEKHWG----DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 279 (479)
Q Consensus 204 ed~~dle~Awe~Le~Ar~Iyek~~~----~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~ 279 (479)
.++|+.--...-|..|+..|.+-+. +.--.|-+|+|-+-..+..|||..||.|..++|.+...+ +-+|
T Consensus 85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h--------~Ka~ 156 (390)
T KOG0551|consen 85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH--------LKAY 156 (390)
T ss_pred HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch--------hhhh
Confidence 3445555555667888888866543 223358899999999999999999999999999987655 4899
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 280 FRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 280 ~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
|+=+.|+..+.++++|+..|+..+.|..
T Consensus 157 ~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 157 IRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999999998887764
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.28 Score=47.93 Aligned_cols=109 Identities=13% Similarity=0.084 Sum_probs=73.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCCC
Q 011692 77 LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGE 156 (479)
Q Consensus 77 ~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~e 156 (479)
-....+++|++.|.-|+-. ..+.++.+-..|.++..++..+..++..
T Consensus 88 ~~~Rt~~~ai~~YkLAll~-~~~~~~~~s~~A~l~LrlAWlyR~~~~~-------------------------------- 134 (214)
T PF09986_consen 88 SGERTLEEAIESYKLALLC-AQIKKEKPSKKAGLCLRLAWLYRDLGDE-------------------------------- 134 (214)
T ss_pred CCCCCHHHHHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHhhccCCH--------------------------------
Confidence 3456899999999999877 5566777778888888886666443100
Q ss_pred CCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcchHHHH
Q 011692 157 SSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDI 236 (479)
Q Consensus 157 ~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v 236 (479)
+.+..-+..|.+.|+.|..--. .+...+.-+.+
T Consensus 135 ----------------------------------------------~~E~~fl~~Al~~y~~a~~~e~-~~~~~~~~~~l 167 (214)
T PF09986_consen 135 ----------------------------------------------ENEKRFLRKALEFYEEAYENED-FPIEGMDEATL 167 (214)
T ss_pred ----------------------------------------------HHHHHHHHHHHHHHHHHHHhCc-CCCCCchHHHH
Confidence 0112344555555554432211 11224566889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 237 LSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 237 ~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
...||+++.+.|+|++|+..|.+.+....
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 99999999999999999999998876644
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.13 Score=57.49 Aligned_cols=85 Identities=18% Similarity=0.153 Sum_probs=71.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+.|+.|..+|..||.+ .....+|+.-+.+...++++++|+..+++||+++..+. ..|..||.+|
T Consensus 632 ~e~eraR~llakar~~--------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~--------Kl~lmlGQi~ 695 (913)
T KOG0495|consen 632 DELERARDLLAKARSI--------SGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH--------KLWLMLGQIE 695 (913)
T ss_pred ccHHHHHHHHHHHhcc--------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH--------HHHHHHhHHH
Confidence 4567777777777652 23577899999999999999999999999999876654 7899999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
+.+++.+.|...|-+.+..|.
T Consensus 696 e~~~~ie~aR~aY~~G~k~cP 716 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKKCP 716 (913)
T ss_pred HHHHHHHHHHHHHHhccccCC
Confidence 999999999999998877664
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.2 Score=50.40 Aligned_cols=88 Identities=18% Similarity=0.123 Sum_probs=69.6
Q ss_pred cChHHHHHHHHHHHHHHHH-HhcCCcchHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHh--cCCCC----hhHHH
Q 011692 206 ESDLDLAWKMLDVARAIAE-KHWGDSMEKVDILSALAEVALERE-DIETSLSDYQKALTILERM--VEPDS----RHIAE 277 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iye-k~~~~~~~~A~v~~~LGev~le~g-~yeeAl~dy~kAL~I~~~l--lg~d~----r~iAe 277 (479)
.+|++.|..|+.++..+.. ..+.....++++++++|.-.+..+ +|+.|+..+++|++|.... ....+ ..-..
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 3789999999999998884 223234678999999999999999 9999999999999997652 11222 34567
Q ss_pred HHHHHHHHHHcCCChh
Q 011692 278 LNFRICLCLEIGSKPQ 293 (479)
Q Consensus 278 a~~~LG~ay~~~g~~e 293 (479)
++..|+.+|...+.++
T Consensus 86 iL~~La~~~l~~~~~~ 101 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYE 101 (278)
T ss_pred HHHHHHHHHHcCCChH
Confidence 7888999998888774
|
It is also involved in sporulation []. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.39 Score=52.29 Aligned_cols=61 Identities=10% Similarity=-0.015 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
..+...||.+..++|+.++||..|+..++.... ...-.+|++|-.||..+++|.++...+.
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~------~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPN------LDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCc------cchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 556678999999999999999999987765431 1234689999999999998876655443
|
The molecular function of this protein is uncertain. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.024 Score=35.19 Aligned_cols=30 Identities=30% Similarity=0.402 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
.+|..+|.++..+++|++|+..|++++++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~ 31 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELD 31 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 578999999999999999999999999764
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.57 Score=47.04 Aligned_cols=94 Identities=13% Similarity=0.082 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
+-+.|+.+|.++..+++...-. ....+-|..++.++....+|++|-..|.+-..+..+.-.-.++ -..+..+=++|.
T Consensus 125 ~Pd~AlqlYqralavve~~dr~-~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~--~k~~va~ilv~L 201 (308)
T KOG1585|consen 125 KPDDALQLYQRALAVVEEDDRD-QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQ--CKAYVAAILVYL 201 (308)
T ss_pred CHHHHHHHHHHHHHHHhccchH-HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccH--HHHHHHHHHHHh
Confidence 4456888888888888765322 2345778899999999999999999998877777665322222 222334445666
Q ss_pred cCCChhHHHHHHHHHHH
Q 011692 288 IGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 288 ~~g~~eeAi~~~ekAL~ 304 (479)
...+|..|..+|+..-.
T Consensus 202 ~~~Dyv~aekc~r~~~q 218 (308)
T KOG1585|consen 202 YAHDYVQAEKCYRDCSQ 218 (308)
T ss_pred hHHHHHHHHHHhcchhc
Confidence 77789899888877443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.6 Score=55.70 Aligned_cols=167 Identities=10% Similarity=0.066 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC--cCCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esd--vLG~~~~~~~e~~~~~ 143 (479)
...+..+...+...|++++|..+|.+..+. | ..|+ ..+|..+-.+|...++.+.. +|....+.
T Consensus 614 ~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-------- 678 (1060)
T PLN03218 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-------- 678 (1060)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc--------
Confidence 356777788899999999999999987653 2 2344 45677777777766443221 11100000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
+. .++.. .-+ ..-..--..++++.|+++|+..+..
T Consensus 679 --------G~---------~pd~~---tyn------------------------sLI~ay~k~G~~eeA~~lf~eM~~~- 713 (1060)
T PLN03218 679 --------GI---------KLGTV---SYS------------------------SLMGACSNAKNWKKALELYEDIKSI- 713 (1060)
T ss_pred --------CC---------CCCHH---HHH------------------------HHHHHHHhCCCHHHHHHHHHHHHHc-
Confidence 00 00000 000 0000001125566666665543321
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
+..+. ..+|+.|-..|+..|++++|+..|++.... -+.|+ ..+|..|-.+|...|++++|...|.+.+
T Consensus 714 ----g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~---Gi~Pd----~~Ty~sLL~a~~k~G~le~A~~l~~~M~ 781 (1060)
T PLN03218 714 ----KLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRL---GLCPN----TITYSILLVASERKDDADVGLDLLSQAK 781 (1060)
T ss_pred ----CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 11222 467999999999999999999999976432 22233 3577788889999999999999998876
Q ss_pred H
Q 011692 304 S 304 (479)
Q Consensus 304 ~ 304 (479)
+
T Consensus 782 k 782 (1060)
T PLN03218 782 E 782 (1060)
T ss_pred H
Confidence 5
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.03 E-value=1.5 Score=38.99 Aligned_cols=68 Identities=16% Similarity=0.128 Sum_probs=46.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD-SRHIAELNFR 281 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d-~r~iAea~~~ 281 (479)
++++.|...+..+..+ .|.--.+|..|-.++...|++..|+..|+++..++.+-+|-. ++.+-..|-.
T Consensus 76 ~~~~~a~~~~~~~l~~-------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~ 144 (146)
T PF03704_consen 76 GDYEEALRLLQRALAL-------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYRE 144 (146)
T ss_dssp T-HHHHHHHHHHHHHH-------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHH
Confidence 5666776665555543 234456899999999999999999999999999999877744 5555555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.023 Score=37.56 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
+++|++|.||...|++++|+.+|++.+.-
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 57899999999999999999999998764
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.46 Score=48.64 Aligned_cols=131 Identities=24% Similarity=0.301 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccC--CcCCCCCCCcCCCCCCCC
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEA--DPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~es--dvLG~~~~~~~e~~~~~~ 144 (479)
...+..|.-.+..++|.+|...|..++.. .|+.+++.+.|+.+|+..++.+. .+|...|...
T Consensus 135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-------- 198 (304)
T COG3118 135 EEALAEAKELIEAEDFGEAAPLLKQALQA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQA-------- 198 (304)
T ss_pred HHHHHHhhhhhhccchhhHHHHHHHHHHh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccc--------
Confidence 34566788899999999999999999998 78899999999999999865422 2332222100
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH--
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI-- 222 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I-- 222 (479)
. ++..-.+....++++.|..+
T Consensus 199 ------------------------------~---------------------------~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 199 ------------------------------Q---------------------------DKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred ------------------------------h---------------------------hhHHHHHHHHHHHHHHHhcCCC
Confidence 0 00001133334555555322
Q ss_pred ---HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 011692 223 ---AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR 273 (479)
Q Consensus 223 ---yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r 273 (479)
+++.....+.-.+.-+.|+.++.-.|+++.|++++ |.|.++..+..+.
T Consensus 222 ~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~L---l~~l~~d~~~~d~ 272 (304)
T COG3118 222 IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHL---LALLRRDRGFEDG 272 (304)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH---HHHHHhcccccCc
Confidence 22222334556788899999999999999998877 4555555554443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.27 Score=52.41 Aligned_cols=47 Identities=21% Similarity=0.217 Sum_probs=33.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKA 260 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kA 260 (479)
++++.|.+++..|.. ..|.--.+|..|+.+|...|+|+.|+-.+..|
T Consensus 248 ~~~~lAL~iAk~av~-------lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 248 KKYELALEIAKKAVE-------LSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred CCHHHHHHHHHHHHH-------hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 344555555444443 34667889999999999999999999665543
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.83 E-value=0.18 Score=56.95 Aligned_cols=103 Identities=21% Similarity=0.145 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+...|..+...|++.+|-++|-.|+.+ +|+-..+...+|.+|++.|+.
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--------dP~hv~s~~Ala~~lle~G~~--------------------- 734 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALAL--------DPDHVPSMTALAELLLELGSP--------------------- 734 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHhCCc---------------------
Confidence 667788999999999999999999999998 888889999999999987411
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.+..+.-||.-|+.+
T Consensus 735 --------------------------------------------------------------~la~~~~~L~dalr~--- 749 (799)
T KOG4162|consen 735 --------------------------------------------------------------RLAEKRSLLSDALRL--- 749 (799)
T ss_pred --------------------------------------------------------------chHHHHHHHHHHHhh---
Confidence 111222244444332
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 266 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ 266 (479)
.+..-++|..||.|...+|++++|..+|+.|+.+-+.
T Consensus 750 ----dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 750 ----DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred ----CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 3455679999999999999999999999999988553
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.41 E-value=1.2 Score=44.95 Aligned_cols=51 Identities=18% Similarity=0.006 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC
Q 011692 231 MEKVDILSALAEVALER------EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 289 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~------g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 289 (479)
...+.+|..+|.-.... +++++++..|++|+.+..... .+||.+|..+...
T Consensus 249 ~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~--------k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 249 ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE--------KAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH--------HHHHHHHHHHHHH
Confidence 34689999999999998 999999999999999977664 5677777666543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.058 Score=38.59 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 310 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl 310 (479)
|++|..||-+-....+|++|+.-|++||+|++..+
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999987654
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.81 Score=42.15 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
+..|...|...+..|+|.+|++.|+....-. =+|+.++ .+.+++|-+++..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry--P~g~ya~---qAqL~l~yayy~~ 60 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY--PFGEYAE---QAQLDLAYAYYKQ 60 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCCcccH---HHHHHHHHHHHHc
Confidence 6689999999999999999998887655431 1344444 5888888888864
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.033 Score=60.17 Aligned_cols=78 Identities=17% Similarity=0.114 Sum_probs=61.6
Q ss_pred chHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHhc----CCC-----ChhHHHHHHHHHHHHHcCCChhHHHHH
Q 011692 231 MEKVDI--LSALAEVALEREDIETSLSDYQKALT-ILERMV----EPD-----SRHIAELNFRICLCLEIGSKPQEAIPY 298 (479)
Q Consensus 231 ~~~A~v--~~~LGev~le~g~yeeAl~dy~kAL~-I~~~ll----g~d-----~r~iAea~~~LG~ay~~~g~~eeAi~~ 298 (479)
+++..| +++||-|++.++.|.-++.+|.+||+ ...++- |.. .-.--+++||.|+.|...|++-.|..+
T Consensus 278 ~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqC 357 (696)
T KOG2471|consen 278 PQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQC 357 (696)
T ss_pred chhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHH
Confidence 444444 57999999999999999999999995 444432 111 112247899999999999999999999
Q ss_pred HHHHHHHHHH
Q 011692 299 CQKAISVCKS 308 (479)
Q Consensus 299 ~ekAL~I~k~ 308 (479)
|++|..+|.+
T Consensus 358 f~~av~vfh~ 367 (696)
T KOG2471|consen 358 FQKAVHVFHR 367 (696)
T ss_pred HHHHHHHHhc
Confidence 9999998854
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.36 Score=45.65 Aligned_cols=88 Identities=18% Similarity=0.156 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChh
Q 011692 214 KMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 293 (479)
Q Consensus 214 e~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~e 293 (479)
+-|+.-+.-|+..+. ...+-.+|..||+.|+..|+++.|+..|.++.... . ...++.+.++++-.+..+.+++.
T Consensus 17 ~~Le~elk~~~~n~~-kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~--~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 17 EKLEAELKDAKSNLG-KESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---T--SPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---C--CHHHHHHHHHHHHHHHHHhCCHH
Confidence 445555555655544 45678999999999999999999999999866542 2 33456788888888888999999
Q ss_pred HHHHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISVCK 307 (479)
Q Consensus 294 eAi~~~ekAL~I~k 307 (479)
....+..+|-.++.
T Consensus 91 ~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 91 HVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHh
Confidence 98888888776543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=1.5 Score=50.74 Aligned_cols=87 Identities=6% Similarity=-0.001 Sum_probs=53.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHH------------H------------
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKAL------------T------------ 262 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL------------~------------ 262 (479)
+.++.||++|+..+..|.- .|. ...|..|.+++.+.|++++|...+++.- .
T Consensus 603 g~v~ea~~~f~~M~~~~gi----~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 603 GMVTQGLEYFHSMEEKYSI----TPN-LKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred ChHHHHHHHHHHHHHHhCC----CCc-hHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 5677788877766544422 222 4688999999999999999988887630 0
Q ss_pred -HHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHH
Q 011692 263 -ILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC 299 (479)
Q Consensus 263 -I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ 299 (479)
..++++. -.|.-+..|..|+.+|...|++++|....
T Consensus 678 ~~a~~l~~-l~p~~~~~y~ll~n~ya~~g~~~~a~~vr 714 (857)
T PLN03077 678 LAAQHIFE-LDPNSVGYYILLCNLYADAGKWDEVARVR 714 (857)
T ss_pred HHHHHHHh-hCCCCcchHHHHHHHHHHCCChHHHHHHH
Confidence 0001110 01112345667788888888877765544
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.049 Score=58.59 Aligned_cols=101 Identities=18% Similarity=0.181 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.|.++-.+++.++..++|+.|+++|++|+++ +|-||..|-+-..+++.+
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~----------------------- 51 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKV----------------------- 51 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheee-----------------------
Confidence 4677888999999999999999999999998 899998877755444432
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++|.-|..=+..|.
T Consensus 52 --------------------------------------------------------------e~~~~Al~Da~kai---- 65 (476)
T KOG0376|consen 52 --------------------------------------------------------------ESFGGALHDALKAI---- 65 (476)
T ss_pred --------------------------------------------------------------chhhhHHHHHHhhh----
Confidence 12222222112222
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
...+..+.+|..-|...+.+++|.+|+.+|++...+..
T Consensus 66 ---e~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~P 103 (476)
T KOG0376|consen 66 ---ELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAP 103 (476)
T ss_pred ---hcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCc
Confidence 12367889999999999999999999999998877754
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.88 E-value=0.49 Score=56.70 Aligned_cols=86 Identities=10% Similarity=0.026 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCCh
Q 011692 213 WKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP 292 (479)
Q Consensus 213 we~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ 292 (479)
.++|++|.++... -.+|..|..||...++|++|.+.|+.-++=+.+.. .+|..+|..+..+.+-
T Consensus 1517 ~kVFeRAcqycd~--------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~--------~vW~~y~~fLl~~ne~ 1580 (1710)
T KOG1070|consen 1517 KKVFERACQYCDA--------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTR--------KVWIMYADFLLRQNEA 1580 (1710)
T ss_pred HHHHHHHHHhcch--------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchh--------hHHHHHHHHHhcccHH
Confidence 3566777765532 34899999999999999999999998877666433 7888889999999999
Q ss_pred hHHHHHHHHHHHHHHH--HHHHHH
Q 011692 293 QEAIPYCQKAISVCKS--RVQRLL 314 (479)
Q Consensus 293 eeAi~~~ekAL~I~k~--rl~~l~ 314 (479)
+.|...+++||..+.+ +++-+.
T Consensus 1581 ~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1581 EAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred HHHHHHHHHHHhhcchhhhHHHHH
Confidence 9999999999999887 555443
|
|
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=93.88 E-value=4.9 Score=36.44 Aligned_cols=117 Identities=15% Similarity=0.071 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhH----HHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALEC----VNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~----A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
-.+..|.+.+..|-|++|+.-|.+|.++...+--+.+-+. |-+|-.+..+|..+
T Consensus 11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~L---------------------- 68 (144)
T PF12968_consen 11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGL---------------------- 68 (144)
T ss_dssp HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhh----------------------
Confidence 3345568889999999999999999999877654432222 22233333333333
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
+.|+.++..-++|+.-|
T Consensus 69 ---------------------------------------------------------------gry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 69 ---------------------------------------------------------------GRYDECLQSADRALRYF 85 (144)
T ss_dssp ---------------------------------------------------------------T-HHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------ccHHHHHHHHHHHHHHH
Confidence 56778888889999999
Q ss_pred HHhcCCcc----hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 011692 224 EKHWGDSM----EKVDILSALAEVALEREDIETSLSDYQKALTILERMVE 269 (479)
Q Consensus 224 ek~~~~~~----~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg 269 (479)
.|....+. .-+.+-++-|.....+|+.++|+..|+.+-++..+--|
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 88865432 23556677889999999999999999999998876544
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.66 Score=48.64 Aligned_cols=82 Identities=13% Similarity=0.157 Sum_probs=50.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+|++.|.+++..-+.| .+=-|..|..-+.+|...|....||.+++.+-++-... .+.||.++..|
T Consensus 169 GD~~~ai~~i~~llEi-------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~Dn--------Te~~ykis~L~ 233 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEI-------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDN--------TEGHYKISQLL 233 (504)
T ss_pred CchhhHHHHHHHHHhc-------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccc--------hHHHHHHHHHH
Confidence 4555565555443332 22346677788889999999999999999887775432 25555555555
Q ss_pred HcCCChhHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL 303 (479)
...|+...++...+.+|
T Consensus 234 Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 234 YTVGDAENSLKEIRECL 250 (504)
T ss_pred HhhhhHHHHHHHHHHHH
Confidence 55555555544444443
|
|
| >cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains | Back alignment and domain information |
|---|
Probab=93.79 E-value=6.8 Score=40.43 Aligned_cols=39 Identities=26% Similarity=0.123 Sum_probs=32.8
Q ss_pred ChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q 011692 272 SRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 310 (479)
Q Consensus 272 ~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl 310 (479)
+...|.+||.+|..+...+++.+|+.+++.|+..++...
T Consensus 247 ~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~~~~~~~~ 285 (345)
T cd09034 247 CIFKALAYYYHGLKLDEANKIGEAIARLQAALELLKESE 285 (345)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Confidence 335789999999999999999999999999998655543
|
This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.76 E-value=1.4 Score=47.91 Aligned_cols=91 Identities=15% Similarity=0.080 Sum_probs=61.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|.+.|+.|...-.... + -..-|+..||.+++-+.+|++|..+|.+.++. +.-.-|.-+|-.|.||
T Consensus 281 g~~~~Ai~~~~~a~~~q~~~~--Q-l~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-------s~WSka~Y~Y~~a~c~ 350 (468)
T PF10300_consen 281 GNLEEAIESFERAIESQSEWK--Q-LHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-------SKWSKAFYAYLAAACL 350 (468)
T ss_pred cCHHHHHHHHHHhccchhhHH--h-HHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHH
Confidence 456677777776652211111 1 12458999999999999999999999877763 2334477789999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
...++.+.+..+-++|..+++
T Consensus 351 ~~l~~~~~~~~~~~~a~~l~~ 371 (468)
T PF10300_consen 351 LMLGREEEAKEHKKEAEELFR 371 (468)
T ss_pred HhhccchhhhhhHHHHHHHHH
Confidence 999999444444444444444
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.32 Score=51.35 Aligned_cols=66 Identities=21% Similarity=0.180 Sum_probs=59.0
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
++-...|..||.+++..+.|.+|-.+|+.||+.+.. +..|.-||.+|..+|+..+|-.+++.+|-+
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s---------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS---------ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC---------hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 444689999999999999999999999999998765 478888999999999999999999999843
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.18 Score=52.60 Aligned_cols=82 Identities=12% Similarity=0.000 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
+.|..+|.+.....+..+-.|.+-+..|+.+.+|..|..+...|+.+-+.+ ..+|.+.|.+-..+|+..+|.
T Consensus 114 ~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y--------~KAYSRR~~AR~~Lg~~~EAK 185 (536)
T KOG4648|consen 114 EEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY--------VKAYSRRMQARESLGNNMEAK 185 (536)
T ss_pred hHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH--------HHHHHHHHHHHHHHhhHHHHH
Confidence 444555555544344556678889999999999999999999999997655 488899999999999999999
Q ss_pred HHHHHHHHHH
Q 011692 297 PYCQKAISVC 306 (479)
Q Consensus 297 ~~~ekAL~I~ 306 (479)
+-|+.+|++-
T Consensus 186 kD~E~vL~LE 195 (536)
T KOG4648|consen 186 KDCETVLALE 195 (536)
T ss_pred HhHHHHHhhC
Confidence 9999998764
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.11 Score=51.26 Aligned_cols=84 Identities=10% Similarity=0.048 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 209 LDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 209 le~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
+-...-+..+||-=|...+.-.|..+++++-||.-+..-|+|+.|.+.|...+++.... --+|.|.|+++.+
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y--------~Ya~lNRgi~~YY 145 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTY--------NYAHLNRGIALYY 145 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcc--------hHHHhccceeeee
Confidence 33334445667777776666678899999999999999999999999999999886544 3789999999999
Q ss_pred CCChhHHHHHHH
Q 011692 289 GSKPQEAIPYCQ 300 (479)
Q Consensus 289 ~g~~eeAi~~~e 300 (479)
.|+|.-|..-|.
T Consensus 146 ~gR~~LAq~d~~ 157 (297)
T COG4785 146 GGRYKLAQDDLL 157 (297)
T ss_pred cCchHhhHHHHH
Confidence 999988766553
|
|
| >cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=93.48 E-value=0.59 Score=38.27 Aligned_cols=61 Identities=20% Similarity=0.087 Sum_probs=50.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHhhh
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSH-YGELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~-~Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
++..|..|+.+|...-..|+|++|..+|.++|+.+... ..+.+|..-..+..--.-++..+
T Consensus 2 ~l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RA 63 (75)
T cd02684 2 SLEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRA 63 (75)
T ss_pred cHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999988774 47888888777665555555443
|
This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear. |
| >PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [] | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.1 Score=55.70 Aligned_cols=73 Identities=10% Similarity=-0.020 Sum_probs=50.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 237 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 237 ~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
+.-|-.|++-+|+|..|+..++--=--++.++..--.--..+||.+|.||.+++||.+|+..|...|-.+.+.
T Consensus 125 ligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 125 LIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677888888888887654321111123332233345789999999999999999999999988665443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.34 E-value=6.7 Score=39.53 Aligned_cols=50 Identities=22% Similarity=0.296 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLY 120 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~ 120 (479)
+..|.+.|...+..|+|.+|+..|..... .-.+|+.. -.+.+.++-|++.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~--~~p~s~~~---~qa~l~l~yA~Yk 83 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDS--RHPFSPYS---EQAQLDLAYAYYK 83 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCCccc---HHHHHHHHHHHHh
Confidence 78999999999999999999999998773 23345554 3466677777765
|
|
| >PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.76 Score=36.45 Aligned_cols=60 Identities=28% Similarity=0.274 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC-CCChhHHHHHHHHHHHHHhhh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYG-ELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~G-e~~pe~A~~y~~YG~ALl~~a 122 (479)
+..|..++.+|..+-..|+|.+|+++|.+|++.+..... +..|..-..+...-.-++..+
T Consensus 2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RA 62 (69)
T PF04212_consen 2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERA 62 (69)
T ss_dssp HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999887765 456777777666666665544
|
; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E .... |
| >cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.79 Score=37.24 Aligned_cols=60 Identities=22% Similarity=0.178 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
+..|..|+.+|...-..|+|.+|+.+|.+|++.+.... .+..|.....+..--.-++..+
T Consensus 3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~Ra 63 (75)
T cd02678 3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999888765 5667777777666555555543
|
This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.34 Score=54.00 Aligned_cols=83 Identities=17% Similarity=0.031 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHH
Q 011692 218 VARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 297 (479)
Q Consensus 218 ~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~ 297 (479)
.+..|..++ ++..+++...|....-+|+-++|...-+.+|.+..+. -.+++-+|+++....+|++||.
T Consensus 29 ~~~~iL~k~----~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S--------~vCwHv~gl~~R~dK~Y~eaiK 96 (700)
T KOG1156|consen 29 LIKQILKKF----PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKS--------HVCWHVLGLLQRSDKKYDEAIK 96 (700)
T ss_pred HHHHHHHhC----CccchhHHhccchhhcccchHHHHHHHHHHhccCccc--------chhHHHHHHHHhhhhhHHHHHH
Confidence 344454443 4567889999999999999999999999888854332 2789999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 011692 298 YCQKAISVCKSRVQR 312 (479)
Q Consensus 298 ~~ekAL~I~k~rl~~ 312 (479)
+|+.||.+-+..++-
T Consensus 97 cy~nAl~~~~dN~qi 111 (700)
T KOG1156|consen 97 CYRNALKIEKDNLQI 111 (700)
T ss_pred HHHHHHhcCCCcHHH
Confidence 999999875544443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.29 Score=53.23 Aligned_cols=87 Identities=13% Similarity=0.136 Sum_probs=68.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.++..|.++|+..+..| |+-+--++..|.++.-.|+.++|+..|++|+..+.+.-. .-..++|.||.+|
T Consensus 247 ~~~~~a~~lL~~~~~~y-------P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Q----l~~l~~~El~w~~ 315 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRY-------PNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQ----LHHLCYFELAWCH 315 (468)
T ss_pred CCHHHHHHHHHHHHHhC-------CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHh----HHHHHHHHHHHHH
Confidence 56777777777666554 233456788999999999999999999999965544321 1247799999999
Q ss_pred HcCCChhHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~ 304 (479)
..+.+|++|..+|.+-++
T Consensus 316 ~~~~~w~~A~~~f~~L~~ 333 (468)
T PF10300_consen 316 MFQHDWEEAAEYFLRLLK 333 (468)
T ss_pred HHHchHHHHHHHHHHHHh
Confidence 999999999999988665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.15 Score=33.46 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
+++..+|.++...|++++|+..|++.+.-.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 478999999999999999999999988754
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.69 Score=43.76 Aligned_cols=91 Identities=21% Similarity=0.141 Sum_probs=70.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
||++.|.+.|..+|.-. ...-..++.++++-.|.+..++|.....+..++-.+... +.+.-.-.....--|+.+
T Consensus 50 Gd~~~A~k~y~~~~~~~----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~--~~d~~~~nrlk~~~gL~~ 123 (177)
T PF10602_consen 50 GDLEEALKAYSRARDYC----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK--GGDWERRNRLKVYEGLAN 123 (177)
T ss_pred hhHHHHHHHHHHHhhhc----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHH
Confidence 78888888888766521 123457899999999999999999999999999999987 333333445555667788
Q ss_pred HcCCChhHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL 303 (479)
...++|..|...|-.++
T Consensus 124 l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 124 LAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHhchHHHHHHHHHccC
Confidence 88899999998885544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins | Back alignment and domain information |
|---|
Probab=92.75 E-value=6.1 Score=41.32 Aligned_cols=37 Identities=30% Similarity=0.254 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 273 RHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 273 r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
..-|.+||..|..+...++|.+||.+++.|...++..
T Consensus 241 ~f~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a 277 (348)
T cd09242 241 YYKSLAAYYHALALEAAGKYGEAIAYLTQAESILKEA 277 (348)
T ss_pred HHHHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHH
Confidence 3457889999999999999999999999999866554
|
This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the |
| >cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins | Back alignment and domain information |
|---|
Probab=92.32 E-value=4.9 Score=42.14 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
..|.+||..|..+...++|.++|.+++.|+..++.-
T Consensus 235 f~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a 270 (355)
T cd09241 235 FKAAAHYRMALVALEKSKYGEEVARLRVALAACKEA 270 (355)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 468889999999999999999999999999865443
|
This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp |
| >cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=92.26 E-value=1 Score=37.12 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-hCCCChhHHHHHHHHHHHHHhhh
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSH-YGELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~-~Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
..|..|+.+|..+-..|+|.+|+.+|.+|++.+... .++.++..-..|...=.-|+..+
T Consensus 4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RA 63 (77)
T cd02683 4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRA 63 (77)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999988874 47888888888777666666554
|
This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear. |
| >cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=92.22 E-value=1.2 Score=36.75 Aligned_cols=47 Identities=17% Similarity=0.161 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--hhCCCChhHHHHH
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVS--HYGELALECVNAY 111 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~--~~Ge~~pe~A~~y 111 (479)
.|..|..++..+-..|+|++|+.+|..|++.+.. +|+...|..-..+
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~i 53 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTI 53 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4788999999999999999999999999999988 6776666665554
|
This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.21 E-value=4.8 Score=39.28 Aligned_cols=63 Identities=13% Similarity=0.076 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
+..+.+..+|.++.-+|+|.+|...|+.++....-. -+.+|| +.-+..+|+..+|-..|..-.
T Consensus 158 r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-------~ar~~Y--~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 158 RSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-------QARIYY--AEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred CCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-------HHHHHH--HHHHHHhcchhHHHHHHHHHH
Confidence 456788999999999999999999999998876432 144444 566677888877766554433
|
|
| >cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains | Back alignment and domain information |
|---|
Probab=92.18 E-value=6 Score=41.38 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=30.4
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
..|.+||..|+.+...++|.+||.+++.|+..++.
T Consensus 253 f~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~ 287 (346)
T cd09240 253 FHALAEYHQSLVAKAQKKFGEEIARLQHALELIKT 287 (346)
T ss_pred HHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 34899999999999999999999999999875443
|
This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.93 E-value=1.4 Score=49.47 Aligned_cols=81 Identities=15% Similarity=0.121 Sum_probs=55.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++.+.|..+|+.|+.+|- ..-..|+.||.|+-.+++.+.|...|..-++.+... .-.+..|+..-
T Consensus 665 d~~eeA~rllEe~lk~fp-------~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~--------ipLWllLakle 729 (913)
T KOG0495|consen 665 DNVEEALRLLEEALKSFP-------DFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNS--------IPLWLLLAKLE 729 (913)
T ss_pred hhHHHHHHHHHHHHHhCC-------chHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCC--------chHHHHHHHHH
Confidence 566677777777776663 345689999999999999999999998877665432 23455555555
Q ss_pred HcCCChhHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKA 302 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekA 302 (479)
+..+..-.|...+.++
T Consensus 730 Ek~~~~~rAR~ildra 745 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRA 745 (913)
T ss_pred HHhcchhhHHHHHHHH
Confidence 6666555555555544
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.93 Score=46.25 Aligned_cols=87 Identities=23% Similarity=0.175 Sum_probs=57.9
Q ss_pred ChHHHHHHHH-------HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 011692 207 SDLDLAWKML-------DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN 279 (479)
Q Consensus 207 ~dle~Awe~L-------e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~ 279 (479)
-.+..||=.| ..|.-||+...........+++.++.+++.+|+|++|...+++||... +.-.+++
T Consensus 167 ~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--------~~~~d~L 238 (290)
T PF04733_consen 167 TQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--------PNDPDTL 238 (290)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---------CCHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--------cCCHHHH
Confidence 4566677433 455667766544333456788899999999999999999988887432 2235789
Q ss_pred HHHHHHHHcCCChhHHH-HHHHH
Q 011692 280 FRICLCLEIGSKPQEAI-PYCQK 301 (479)
Q Consensus 280 ~~LG~ay~~~g~~eeAi-~~~ek 301 (479)
.|+..|...+|+..++. +++++
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHH
Confidence 99999999999885444 44444
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=91.73 E-value=0.64 Score=51.29 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHcCCChh
Q 011692 216 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETS-LSDYQKALTILERMVE-PDSRHIAELNFRICLCLEIGSKPQ 293 (479)
Q Consensus 216 Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeA-l~dy~kAL~I~~~llg-~d~r~iAea~~~LG~ay~~~g~~e 293 (479)
+..|+.+|++.....|..+.+|-.|+.+|.-...|... -..+.++.....+... +..+..+.+|.-+|+.+...|+++
T Consensus 358 ~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~ 437 (517)
T PRK10153 358 LNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTD 437 (517)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHH
Confidence 34666677776665677888888888877665444310 0122233332222111 112223578999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISVCK 307 (479)
Q Consensus 294 eAi~~~ekAL~I~k 307 (479)
+|..+|++|+.+..
T Consensus 438 ~A~~~l~rAl~L~p 451 (517)
T PRK10153 438 EAYQAINKAIDLEM 451 (517)
T ss_pred HHHHHHHHHHHcCC
Confidence 99999999998754
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=91.67 E-value=4.8 Score=46.67 Aligned_cols=63 Identities=10% Similarity=0.067 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
..+|+.|...|...|++++|+..|++.++ .-+.|+. .+|..|=.+|...|++++|+.+|+...
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~---~g~~Pd~----~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVE---SGVNPDE----VTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCCCc----ccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 45788888888888888888888887543 2233443 345555567777888888888887665
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.59 E-value=1.5 Score=45.27 Aligned_cols=31 Identities=19% Similarity=0.112 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 275 IAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 275 iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.|.+..++|..+...|+|+.|+.-|+.|+.+
T Consensus 143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 143 EADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred ccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 4788999999999999999999999998875
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=91.57 E-value=2.9 Score=41.49 Aligned_cols=91 Identities=14% Similarity=0.067 Sum_probs=72.9
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 285 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 285 (479)
.+.-....+.|..|+..|.+... .--...+...||.-|+..|+|++|+.+|+.++...++- .=...+..++..|-.|
T Consensus 151 ~~hs~~iI~lL~~A~~~f~~~~~-~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~C 227 (247)
T PF11817_consen 151 VDHSKLIIELLEKAYEQFKKYGQ-NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLEC 227 (247)
T ss_pred cchHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHH
Confidence 45667888999999999988753 22346678899999999999999999999997666531 1256688999999999
Q ss_pred HHcCCChhHHHHHH
Q 011692 286 LEIGSKPQEAIPYC 299 (479)
Q Consensus 286 y~~~g~~eeAi~~~ 299 (479)
+...++.+..+.+.
T Consensus 228 a~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 228 AKRLGDVEDYLTTS 241 (247)
T ss_pred HHHhCCHHHHHHHH
Confidence 99999988776654
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=91.48 E-value=1.6 Score=39.49 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhH--HHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 236 ILSALAEVALEREDIETSLSDYQKALTILERMVEPD-----SRHI--AELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 236 v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d-----~r~i--Aea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
-|.+||+..+..+++=.++-+|++||.+-+++-..+ .+.+ .-+.+||+.-|+.+|+.+=.++|++-|-+
T Consensus 3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 478999999999999999999999999999984222 2222 23468999999999999999999987764
|
|
| >smart00745 MIT Microtubule Interacting and Trafficking molecule domain | Back alignment and domain information |
|---|
Probab=91.37 E-value=1.8 Score=34.92 Aligned_cols=60 Identities=27% Similarity=0.247 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
+..|..|+.+|..+-..|+|++|+.+|.+|++.+.... -+..|..-..+..--+-|+..+
T Consensus 5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~ra 65 (77)
T smart00745 5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRA 65 (77)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999999887754 3456677777766666666554
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.74 Score=45.63 Aligned_cols=73 Identities=27% Similarity=0.346 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH-HcCCChhHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL-EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~---yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay-~~~g~~eeAi~~~ekAL~I 305 (479)
.++.|.-|+++.....+ -++|...|++|+.+....+++.||.--....|.+.-| +..++.++|+...++|+.-
T Consensus 122 kgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~ 198 (236)
T PF00244_consen 122 KGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDE 198 (236)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHH
T ss_pred hccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 47777788888755333 3789999999999999999999988555555655554 7799999998888887653
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=91.20 E-value=1.9 Score=34.67 Aligned_cols=60 Identities=20% Similarity=0.266 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
+..|..|+.+|..+-..|+|++|+.+|.+|++.+.... .+..|..-..|...-.-|+..+
T Consensus 3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~Ra 63 (75)
T cd02656 3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999887755 4556777677766666666554
|
The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.00 E-value=2.8 Score=44.33 Aligned_cols=51 Identities=22% Similarity=0.267 Sum_probs=31.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHH
Q 011692 237 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 295 (479)
Q Consensus 237 ~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeA 295 (479)
...|+.|+..+-.|.+||..|++.|. ++|..--...++++||..+.-|+-+
T Consensus 154 qLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYydvs 204 (557)
T KOG3785|consen 154 QLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYYDVS 204 (557)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchhhhH
Confidence 34455555555555555555554443 4555556677889999988876544
|
|
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=90.73 E-value=1.8 Score=43.26 Aligned_cols=74 Identities=24% Similarity=0.244 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHcCCChhHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRICLC-LEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~---yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a-y~~~g~~eeAi~~~ekAL~I~ 306 (479)
.++.|.-|+++....++ -++|...|++|+.|....++|.||.---...|.++. |+.+++.++|+..-++|+.-.
T Consensus 124 KGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 124 KGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 47888888888655444 469999999999999988999998744444454444 456889999887777766543
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.71 E-value=6.4 Score=42.60 Aligned_cols=35 Identities=11% Similarity=0.076 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMV 268 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ll 268 (479)
-..|...|.+.+.+|+-++|.++|+.|...+.++-
T Consensus 267 lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elk 301 (568)
T KOG2561|consen 267 LRLELLQGVVAYHQGQRDEAYEALESAHAKLLELK 301 (568)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHee
Confidence 47788999999999999999999999999888764
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.9 Score=34.83 Aligned_cols=30 Identities=10% Similarity=0.187 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
+.+|.|++++.++|+|++|..+++..|++-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999875
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.39 E-value=0.15 Score=54.91 Aligned_cols=85 Identities=16% Similarity=0.050 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHH
Q 011692 216 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 295 (479)
Q Consensus 216 Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeA 295 (479)
|+.|...|.+.....+.-|..|.+-+..++..++|..|+.|+.+|+++- |..+.+||+-|.++..+++|.+|
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d--------P~~~K~Y~rrg~a~m~l~~~~~A 91 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELD--------PTYIKAYVRRGTAVMALGEFKKA 91 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcC--------chhhheeeeccHHHHhHHHHHHH
Confidence 3445555555555566677788888899999999999999999999885 55679999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011692 296 IPYCQKAISVCKS 308 (479)
Q Consensus 296 i~~~ekAL~I~k~ 308 (479)
+.-|++...+...
T Consensus 92 ~~~l~~~~~l~Pn 104 (476)
T KOG0376|consen 92 LLDLEKVKKLAPN 104 (476)
T ss_pred HHHHHHhhhcCcC
Confidence 9999887766543
|
|
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=90.35 E-value=2.9 Score=34.42 Aligned_cols=37 Identities=24% Similarity=0.180 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 275 IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 275 iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
.|..|...+.-+...|+|.+||.+|+.||+++...+.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~ 41 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVK 41 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4777888899999999999999999999998766654
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.96 E-value=5.4 Score=44.32 Aligned_cols=80 Identities=23% Similarity=0.283 Sum_probs=57.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERE---DIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g---~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
|+..|..+|.+|-. ....++.+.||.++.... ++.+|..+|..|..- .| ..++|+||.
T Consensus 308 d~~~A~~~~~~aA~---------~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-------G~---~~A~~~la~ 368 (552)
T KOG1550|consen 308 DYEKALKLYTKAAE---------LGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-------GH---ILAIYRLAL 368 (552)
T ss_pred cHHHHHHHHHHHHh---------cCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-------CC---hHHHHHHHH
Confidence 45555555544432 245678889999998877 567787777777543 22 488999999
Q ss_pred HHHcC----CChhHHHHHHHHHHHHH
Q 011692 285 CLEIG----SKPQEAIPYCQKAISVC 306 (479)
Q Consensus 285 ay~~~----g~~eeAi~~~ekAL~I~ 306 (479)
||... .+...|..+|.+|.+.-
T Consensus 369 ~y~~G~gv~r~~~~A~~~~k~aA~~g 394 (552)
T KOG1550|consen 369 CYELGLGVERNLELAFAYYKKAAEKG 394 (552)
T ss_pred HHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence 99865 36789999999988765
|
|
| >KOG2709 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.96 E-value=1 Score=48.12 Aligned_cols=144 Identities=19% Similarity=0.210 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAE 355 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~E 355 (479)
|.+..++|+||..++++++|+.+|+++|.++..-|-- . .+..+...+ ..-.+...=
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpv-----------------g-----~k~k~~~~~--~~W~dAcal 77 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPV-----------------G-----EKMKNARKS--EMWKDACAL 77 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcc-----------------c-----ccccccccc--hhhHHHHHH
Confidence 5677899999999999999999999999876542110 0 000000000 112355677
Q ss_pred HHHHHhhHHHHHHHHHHHHHhhc----CChhHHHHHHHhhhhccCCCCCCcccccccccccccCCCCCCCCCCCcccccc
Q 011692 356 IETLSGLCGDLEKKLEDLQQVAL----FPKSILSEILGMASAKAKGDEKSSTSAVLSSSRMGTANSDGDFDSPTVSTAHT 431 (479)
Q Consensus 356 ieelk~ll~dl~~KieDlk~~~~----~p~s~~~e~~~~~~~~~~g~~~~~~~~~~~~s~~~~~~~s~gf~sp~~~~~~~ 431 (479)
|.-||+-+..++.||+=|+.... +|..-..+.++.+-.+ .+|.-+...|.|-...|+|. +|.. -+
T Consensus 78 iQklkes~~~vr~Rl~vL~kqkqsid~~~~q~tpk~~~E~~~k-----rpPllaenPstqyg~~N~sg---APkt---Yr 146 (560)
T KOG2709|consen 78 IQKLKESKSSVRHRLNVLKKQKQSIDEGPKQPTPKKIKEAEEK-----RPPLLAENPSTQYGVENESG---APKT---YR 146 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCccccCchhhhccCcc-----cCcccccCcchhhccccccC---CCcc---cc
Confidence 88999999999999999987422 1111111122211111 34544555555655556662 2322 22
Q ss_pred CCCCC------ceecccccccccccccCC
Q 011692 432 SGAAG------VTHLGVVGRGVKRVSMST 454 (479)
Q Consensus 432 ~~~~~------v~~lgvvg~g~kr~~~~~ 454 (479)
.-+++ |.+.-|||.-.=|.-++|
T Consensus 147 elAAglrellavrdakvlldE~~R~q~~~ 175 (560)
T KOG2709|consen 147 ELAAGLRELLAVRDAKVLLDEAIRMQLDS 175 (560)
T ss_pred hhhhhhhhhhccchhHHHHHHHHHhhccC
Confidence 34444 445556666666776664
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=89.76 E-value=17 Score=40.80 Aligned_cols=97 Identities=22% Similarity=0.169 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.++++|..+|++++.+..++ +.....-.+...|+.++...+... |+...++++...+. ++..+...+--+.++.+++
T Consensus 74 ~n~~~Ae~~L~k~~~l~~~~-~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~-~~~~~w~~~frll~~~l~~ 150 (608)
T PF10345_consen 74 ENLDLAETYLEKAILLCERH-RLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSET-YGHSAWYYAFRLLKIQLAL 150 (608)
T ss_pred CCHHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhc-cCchhHHHHHHHHHHHHHH
Confidence 46888999999998888772 222224667888999999999888 99999999999887 3333333333333333443
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
.. +++..|+..++....+-.
T Consensus 151 ~~-~d~~~Al~~L~~~~~~a~ 170 (608)
T PF10345_consen 151 QH-KDYNAALENLQSIAQLAN 170 (608)
T ss_pred hc-ccHHHHHHHHHHHHHHhh
Confidence 33 688889998888777654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.50 E-value=3.5 Score=49.91 Aligned_cols=179 Identities=17% Similarity=0.190 Sum_probs=103.6
Q ss_pred ccCCCCCCCCccCCchhhhHHHHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHH
Q 011692 44 CNNNCETSGAIADGEREKTVEFADELME-------KGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGR 116 (479)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~l~~A~~L~~-------~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ 116 (479)
+-|..|++++ ++.-.++.++|-.|.. +-..|....+|++|.++|.+-++ +|| ....+|..||.
T Consensus 1503 ~lNlEn~yG~--eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~K----KF~----q~~~vW~~y~~ 1572 (1710)
T KOG1070|consen 1503 YLNLENAYGT--EESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLK----KFG----QTRKVWIMYAD 1572 (1710)
T ss_pred HHhHHHhhCc--HHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHH----Hhc----chhhHHHHHHH
Confidence 4578888884 3445567777777766 33456677888999888776555 465 35579999999
Q ss_pred HHHhhhhccCC--cCCCCCCCcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCC
Q 011692 117 ALLYKAQEEAD--PLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGN 194 (479)
Q Consensus 117 ALl~~ar~esd--vLG~~~~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~ 194 (479)
.|+.+-+.+.. +|+++.+-- + . ++.-
T Consensus 1573 fLl~~ne~~aa~~lL~rAL~~l-------------P--------------k---------~eHv---------------- 1600 (1710)
T KOG1070|consen 1573 FLLRQNEAEAARELLKRALKSL-------------P--------------K---------QEHV---------------- 1600 (1710)
T ss_pred HHhcccHHHHHHHHHHHHHhhc-------------c--------------h---------hhhH----------------
Confidence 99986332211 333211100 0 0 0000
Q ss_pred CCccccccccCcChH---HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 011692 195 DGENVAEADEDESDL---DLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD 271 (479)
Q Consensus 195 ~~E~~~~~~ed~~dl---e~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d 271 (479)
+-...| +-..---+++|.||+..+...|+..+.|+...+.-+..++.+-+...|++++.+.-.
T Consensus 1601 ---------~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~----- 1666 (1710)
T KOG1070|consen 1601 ---------EFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS----- 1666 (1710)
T ss_pred ---------HHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC-----
Confidence 000000 000001166777777776666777788888777777777778888888877766432
Q ss_pred ChhHHHHHHHHHHHHHcCCChhHHHHHH
Q 011692 272 SRHIAELNFRICLCLEIGSKPQEAIPYC 299 (479)
Q Consensus 272 ~r~iAea~~~LG~ay~~~g~~eeAi~~~ 299 (479)
+.-+.-+|+.=+-|+...--++++++.
T Consensus 1667 -~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1667 -IKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred -hhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 223455566666666553334444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.20 E-value=1.9 Score=41.98 Aligned_cols=74 Identities=23% Similarity=0.192 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------------------HHHHhcC-CCChhHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALT----------------------------ILERMVE-PDSRHIAELNFRICL 284 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~----------------------------I~~~llg-~d~r~iAea~~~LG~ 284 (479)
..-+..||....+.|+|.+|..+|+++|. .++.++. +..++.++.+.-+|.
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR 168 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFAR 168 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHH
Confidence 44566788888888888888888887763 1122221 123445677888999
Q ss_pred HHHcCCChhHHHHHHHHHHHHHH
Q 011692 285 CLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 285 ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
+|.-+|++.+|...|+.++..+.
T Consensus 169 ~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 169 TLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred HHHhcCCchhHHHHHHHHHHhCC
Confidence 99999999999999999998764
|
|
| >PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking | Back alignment and domain information |
|---|
Probab=88.43 E-value=5.9 Score=31.28 Aligned_cols=37 Identities=14% Similarity=0.090 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 312 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~ 312 (479)
|..+.+.|+-+...|+|++|+.+|.+|++.+..-+..
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~ 41 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKS 41 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Confidence 4556677888889999999999999999987776653
|
; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E .... |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.38 E-value=0.2 Score=52.21 Aligned_cols=51 Identities=20% Similarity=0.320 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
++.|.+...++.-++..|+|+.|+++|-.|+++ +|..|.+|-+-+.+++.+
T Consensus 111 ~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl 161 (377)
T KOG1308|consen 111 MDQANDKKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKL 161 (377)
T ss_pred HHHHHHHHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeec
Confidence 456889999999999999999999999999998 899999999999888876
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.33 E-value=2 Score=46.89 Aligned_cols=49 Identities=20% Similarity=0.306 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
+.-.+++++|..|+..|+--.|.++|.++...+... ...|.+|+-|+.+
T Consensus 333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~n--------PrlWLRlAEcCim 381 (696)
T KOG2471|consen 333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRN--------PRLWLRLAECCIM 381 (696)
T ss_pred cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHH
Confidence 346789999999999999999999999999887654 2456666666544
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.11 E-value=10 Score=38.20 Aligned_cols=101 Identities=13% Similarity=0.124 Sum_probs=71.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHh------------------
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALT-ILERM------------------ 267 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~-I~~~l------------------ 267 (479)
+.++.|...|..+....... ......+...-+.+....|+..+|+..++..+. .....
T Consensus 160 g~~~~A~~~l~~~~~~~~~~---~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (352)
T PF02259_consen 160 GNFQLALSALNRLFQLNPSS---ESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLE 236 (352)
T ss_pred CCcHHHHHHHHHHhccCCcc---cCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccc
Confidence 56666766655544332111 111456777778889999999999999988888 22222
Q ss_pred -------cCCCChhHHHHHHHHHHHHHcC------CChhHHHHHHHHHHHHHHHHH
Q 011692 268 -------VEPDSRHIAELNFRICLCLEIG------SKPQEAIPYCQKAISVCKSRV 310 (479)
Q Consensus 268 -------lg~d~r~iAea~~~LG~ay~~~------g~~eeAi~~~ekAL~I~k~rl 310 (479)
........|.+|+.+|.-.... +.+++++.+|++|+.+.....
T Consensus 237 ~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 237 VISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred cccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 1223577899999999999988 889999999999999876543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=88.10 E-value=2.8 Score=34.54 Aligned_cols=40 Identities=23% Similarity=0.294 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGE 102 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge 102 (479)
+++|..|+.+|...-..|+|++|..+|.+|++.+.....+
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ekn~ 42 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCINTSNE 42 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHhcCh
Confidence 5789999999999999999999999999999988774333
|
This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear. |
| >cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains | Back alignment and domain information |
|---|
Probab=88.03 E-value=39 Score=35.70 Aligned_cols=37 Identities=16% Similarity=0.020 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 273 RHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 273 r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
..-|.+||..|..+...++|.++|.+++.|+..++.-
T Consensus 249 ~f~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~a 285 (361)
T cd09239 249 YYASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEEA 285 (361)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3468899999999999999999999999998754433
|
This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l |
| >cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily | Back alignment and domain information |
|---|
Probab=87.69 E-value=11 Score=39.70 Aligned_cols=33 Identities=21% Similarity=0.069 Sum_probs=29.2
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
..|.+||..|..+...++|.+||.+++.|...+
T Consensus 245 f~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l 277 (353)
T cd09246 245 FRAEALYRAAKDLHEKEDIGEEIARLRAASDAL 277 (353)
T ss_pred HHHHHHHHHHHHhHHhcchHHHHHHHHHHHHHH
Confidence 468899999999999999999999999998743
|
This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro |
| >cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=87.64 E-value=4.1 Score=33.37 Aligned_cols=58 Identities=22% Similarity=0.231 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hhCCCChhHHHHHHHHHHHHHh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVS-HYGELALECVNAYYQYGRALLY 120 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~-~~Ge~~pe~A~~y~~YG~ALl~ 120 (479)
+..|..|+.+|...-..|+|++|..+|..+++.+.. +-++.+|..-+.+-.-=.-|+.
T Consensus 3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~ 61 (75)
T cd02677 3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLK 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999998877 4478888776665544333333
|
This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=87.61 E-value=41 Score=35.50 Aligned_cols=103 Identities=17% Similarity=0.066 Sum_probs=68.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+.+.-|+ |.|+.++.=.+.. +---+...|--..+..++|+-=+..++..+...... --..+...-|.+++||
T Consensus 117 G~~rTAl---E~~KlLlsLdp~~--DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 117 GCWRTAL---EWCKLLLSLDPDE--DPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIALAY 188 (360)
T ss_pred CcHHHHH---HHHHHHHhcCCCC--CcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHHHHH
Confidence 4566665 4566666433331 122345555566677788877777777655521100 0001335678888888
Q ss_pred HcCCCh---------------hHHHHHHHHHHHHHHHHHHHHHHHH
Q 011692 287 EIGSKP---------------QEAIPYCQKAISVCKSRVQRLLNEV 317 (479)
Q Consensus 287 ~~~g~~---------------eeAi~~~ekAL~I~k~rl~~l~~~l 317 (479)
.+.++- +.|-...++||..+...+..|-+++
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl~~Ll~~l 234 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVLVPLLDKL 234 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhHHHHHHHHHHh
Confidence 888888 8999999999999999999998777
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=87.23 E-value=18 Score=38.63 Aligned_cols=72 Identities=14% Similarity=-0.019 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---------HhcCC--------------CChhHHHHHHHHHHHHHcCC
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILE---------RMVEP--------------DSRHIAELNFRICLCLEIGS 290 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~---------~llg~--------------d~r~iAea~~~LG~ay~~~g 290 (479)
..+-..++.-+.++|++++|....+.+|+-.- .+.+. .|+.-+..|+-||..|...+
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~ 342 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNK 342 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhh
Confidence 34555677788888999999888877775321 11111 24444588999999999999
Q ss_pred ChhHHHHHHHHHHHH
Q 011692 291 KPQEAIPYCQKAISV 305 (479)
Q Consensus 291 ~~eeAi~~~ekAL~I 305 (479)
.|.+|-.+|+.||..
T Consensus 343 ~w~kA~~~leaAl~~ 357 (400)
T COG3071 343 LWGKASEALEAALKL 357 (400)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988854
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=87.10 E-value=33 Score=36.39 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEI 95 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei 95 (479)
..+.....++..+|..++|..|...|.+.+..
T Consensus 129 ~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r 160 (379)
T PF09670_consen 129 VFGDREWRRAKELFNRYDYGAAARILEELLRR 160 (379)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 35667788899999999999999999998874
|
|
| >PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome | Back alignment and domain information |
|---|
Probab=86.99 E-value=13 Score=38.90 Aligned_cols=38 Identities=24% Similarity=0.144 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
..|.+||.+|..+...++|.+|+.+++.|...++....
T Consensus 237 ~~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~a~~ 274 (377)
T PF03097_consen 237 YRALAHYHQALAAEEAKKYGEAIARLRRAEEALKEASK 274 (377)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999987666543
|
The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=86.88 E-value=2.1 Score=46.84 Aligned_cols=99 Identities=17% Similarity=0.172 Sum_probs=66.9
Q ss_pred cChHHHHHHHHHHHHHH--HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC------------
Q 011692 206 ESDLDLAWKMLDVARAI--AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD------------ 271 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~I--yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d------------ 271 (479)
+.-++.||.--+....| -.+.+.-.++-|++|..|++=. .....+|...|+++++.-+..++.+
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~ 249 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA 249 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence 35578888432111111 1222223456789999998732 3346889999999999888877653
Q ss_pred -Ch----hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 272 -SR----HIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 272 -~r----~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
++ -..-+-++|++|...+|+.++||++|+.-+..+
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~ 289 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF 289 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence 11 134566889999999999999999998877543
|
The molecular function of this protein is uncertain. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=86.69 E-value=13 Score=42.83 Aligned_cols=68 Identities=19% Similarity=0.155 Sum_probs=43.8
Q ss_pred cchHHHHHHHHHH------HHHhcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHH
Q 011692 230 SMEKVDILSALAE------VALEREDIETSLSDYQK------ALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 297 (479)
Q Consensus 230 ~~~~A~v~~~LGe------v~le~g~yeeAl~dy~k------AL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~ 297 (479)
-..+|+-|.++|+ ++.+.+.|..||.+|.+ |.++.++..+++.. ...|.--+--+...|+|.+|..
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~e~t--~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGPEAT--ISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCchhH--HHHHHHhHHhHHhhcchhhhhh
Confidence 3567777777764 57778888889988865 56666666665542 3344445555667777765555
Q ss_pred HH
Q 011692 298 YC 299 (479)
Q Consensus 298 ~~ 299 (479)
.|
T Consensus 846 ly 847 (1636)
T KOG3616|consen 846 LY 847 (1636)
T ss_pred ee
Confidence 44
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.46 E-value=23 Score=38.98 Aligned_cols=129 Identities=15% Similarity=0.078 Sum_probs=90.4
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCC---cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGD---SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 282 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~---~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~L 282 (479)
-++++.|.+.+-..+..+.+.+.. .-..+.+|..||.-++..+.|+.|..+|..|+++-.+. ...|.+..||
T Consensus 336 ~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnl 410 (629)
T KOG2300|consen 336 RGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNL 410 (629)
T ss_pred hCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhH
Confidence 367778887777778888887652 23358999999999999999999999999999987654 2368888899
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHHhh
Q 011692 283 CLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGL 362 (479)
Q Consensus 283 G~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk~l 362 (479)
+.+|...++.+ .+| ++ ++......+. .-+....++-|.-+.+|
T Consensus 411 Ai~YL~~~~~e---d~y-~~--------------ld~i~p~nt~-------------------s~ssq~l~a~~~~v~gl 453 (629)
T KOG2300|consen 411 AISYLRIGDAE---DLY-KA--------------LDLIGPLNTN-------------------SLSSQRLEASILYVYGL 453 (629)
T ss_pred HHHHHHhccHH---HHH-HH--------------HHhcCCCCCC-------------------cchHHHHHHHHHHHHHH
Confidence 99998877532 222 22 2222110000 01224667788888888
Q ss_pred HHHHHHHHHHHHHh
Q 011692 363 CGDLEKKLEDLQQV 376 (479)
Q Consensus 363 l~dl~~KieDlk~~ 376 (479)
..=++-++.+.|..
T Consensus 454 faf~qn~lnEaK~~ 467 (629)
T KOG2300|consen 454 FAFKQNDLNEAKRF 467 (629)
T ss_pred HHHHhccHHHHHHH
Confidence 88888888877654
|
|
| >COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.24 E-value=17 Score=32.65 Aligned_cols=75 Identities=23% Similarity=0.297 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLL 314 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~l~ 314 (479)
..+..|..+.+..-.++.-+...++||.=+..+- +| +.+|...|.++.+. ..++++.-.+.-++.++.||..|+
T Consensus 17 qLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~-eD----~~vYk~VG~llvk~-~k~~~~~eL~er~E~Le~ri~tLe 90 (119)
T COG1382 17 QLQQQLQKVILQKQQLEAQLKEIEKALEELEKLD-ED----APVYKKVGNLLVKV-SKEEAVDELEERKETLELRIKTLE 90 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-cc----cHHHHHhhhHHhhh-hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777777888888888777663 22 37899999999888 667787777777776666666664
Q ss_pred H
Q 011692 315 N 315 (479)
Q Consensus 315 ~ 315 (479)
+
T Consensus 91 k 91 (119)
T COG1382 91 K 91 (119)
T ss_pred H
Confidence 4
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.01 E-value=0.73 Score=29.65 Aligned_cols=25 Identities=16% Similarity=0.220 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
.+++.||.+|..+|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 5789999999999999999988763
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.01 E-value=6.9 Score=44.22 Aligned_cols=97 Identities=16% Similarity=0.240 Sum_probs=66.0
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
||+.++-.++..+..|.+.++..+-.-++-.|.|...-+..-|++|-..|++-+.|++ .|.-..|=.+|.---+.-.
T Consensus 485 DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk---~p~v~diW~tYLtkfi~ry 561 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFK---WPNVYDIWNTYLTKFIKRY 561 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC---CccHHHHHHHHHHHHHHHh
Confidence 5667777788888888888775544556777888888888888888888888877653 2223334444444444433
Q ss_pred cCCChhHHHHHHHHHHHHHH
Q 011692 288 IGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 288 ~~g~~eeAi~~~ekAL~I~k 307 (479)
-.-+++.|...|++||+.|.
T Consensus 562 gg~klEraRdLFEqaL~~Cp 581 (835)
T KOG2047|consen 562 GGTKLERARDLFEQALDGCP 581 (835)
T ss_pred cCCCHHHHHHHHHHHHhcCC
Confidence 33367888888888887663
|
|
| >PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4 | Back alignment and domain information |
|---|
Probab=85.91 E-value=17 Score=36.94 Aligned_cols=138 Identities=16% Similarity=0.186 Sum_probs=76.9
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCC----cc---h-HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCCh
Q 011692 205 DESDLDLAWKMLDVARAIAEKHWGD----SM---E-KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSR 273 (479)
Q Consensus 205 d~~dle~Awe~Le~Ar~Iyek~~~~----~~---~-~A~v~~~LGev~le~g~---yeeAl~dy~kAL~I~~~llg~d~r 273 (479)
.++.|+.=-....+.+.||.||++- .+ . ....+..|..|-.++.+ .+-.-.++..++.+...+-
T Consensus 88 ~VngY~Vk~S~~silq~If~KHGDIAsNc~lkS~~~RS~yLe~Lc~IIqeLq~t~~~~LS~~dl~e~~~~l~DLe----- 162 (269)
T PF05278_consen 88 SVNGYQVKPSQVSILQKIFEKHGDIASNCKLKSQQFRSYYLECLCDIIQELQSTPLKELSESDLKEMIATLKDLE----- 162 (269)
T ss_pred eECCEEEcHhHHHHHHHHHHhCccHhhccccCcHHHHHHHHHHHHHHHHHHhcCcHhhhhHHHHHHHHHHHHHHH-----
Confidence 3677776667778899999999762 11 1 12223334444333322 2334455666666665542
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHH------HHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccch
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQK------AISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDK 347 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ek------AL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 347 (479)
.+-.++++.......+-+|.++|.+ -.+..++.|...+.+++... .
T Consensus 163 ---sa~vkV~WLR~~L~Ei~Ea~e~~~~~~~~e~eke~~~r~l~~~~~ELe~~~-------------------------E 214 (269)
T PF05278_consen 163 ---SAKVKVDWLRSKLEEILEAKEIYDQHETREEEKEEKDRKLELKKEELEELE-------------------------E 214 (269)
T ss_pred ---HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------H
Confidence 3344444444444444455555543 22223334444444443331 2
Q ss_pred hhhHHHHHHHHHHhhHHHHHHHHHHHHH
Q 011692 348 LLTDKEAEIETLSGLCGDLEKKLEDLQQ 375 (479)
Q Consensus 348 ~~~~~~~Eieelk~ll~dl~~KieDlk~ 375 (479)
+....++++.+++.=+.++..||.+|+.
T Consensus 215 eL~~~Eke~~e~~~~i~e~~~rl~~l~~ 242 (269)
T PF05278_consen 215 ELKQKEKEVKEIKERITEMKGRLGELEM 242 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888888875
|
|
| >KOG1118 consensus Lysophosphatidic acid acyltransferase endophilin/SH3GL, involved in synaptic vesicle formation [Lipid transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.87 E-value=47 Score=34.52 Aligned_cols=52 Identities=19% Similarity=0.095 Sum_probs=35.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQ 258 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~ 258 (479)
..|...--+|-.+..-|.+.++.......+|..+|+.+.+.+.....+.++-
T Consensus 79 ~~ypq~e~~Lg~~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~v 130 (366)
T KOG1118|consen 79 KGYPQTEGLLGDVMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNV 130 (366)
T ss_pred CCCccchhHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566667777777777666677777778888777777766665543
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.86 E-value=1.4 Score=46.42 Aligned_cols=82 Identities=22% Similarity=0.207 Sum_probs=60.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.||.-|..+|+.++..-+ .+--++..-||-+++.+|+|++|+..|+-... + ++ --++...+|+.|+
T Consensus 36 rDytGAislLefk~~~~~------EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~--~-----~~-~~~el~vnLAcc~ 101 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDR------EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMN--K-----DD-APAELGVNLACCK 101 (557)
T ss_pred ccchhHHHHHHHhhccch------hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhc--c-----CC-CCcccchhHHHHH
Confidence 467778888887763321 12245566788889999999999999986544 1 11 1267888999999
Q ss_pred HcCCChhHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKA 302 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekA 302 (479)
.++|.|.+|.....+|
T Consensus 102 FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 102 FYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999998887775
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.82 E-value=0.87 Score=29.29 Aligned_cols=24 Identities=21% Similarity=0.109 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQ 258 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~ 258 (479)
.++..||.++..+|++++|...++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 478899999999999999998876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.38 E-value=2.5 Score=48.78 Aligned_cols=75 Identities=19% Similarity=0.225 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC
Q 011692 210 DLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 289 (479)
Q Consensus 210 e~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 289 (479)
..=+-||+.|+.||.+. .-|..|-.+|...|.+.+|+ +|.+.. |.-++=.+||+.+.-++..
T Consensus 810 AieLgMlEeA~~lYr~c--------kR~DLlNKlyQs~g~w~eA~-------eiAE~~---DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 810 AIELGMLEEALILYRQC--------KRYDLLNKLYQSQGMWSEAF-------EIAETK---DRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred HHHHhhHHHHHHHHHHH--------HHHHHHHHHHHhcccHHHHH-------HHHhhc---cceehhhhHHHHHHHHHhh
Confidence 33345677777777654 23566666666666655554 444332 3334668999999999999
Q ss_pred CChhHHHHHHHHH
Q 011692 290 SKPQEAIPYCQKA 302 (479)
Q Consensus 290 g~~eeAi~~~ekA 302 (479)
++.+.|++||+|+
T Consensus 872 ~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 872 RDIEAALEYYEKA 884 (1416)
T ss_pred ccHHHHHHHHHhc
Confidence 9999999999984
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=85.36 E-value=32 Score=39.77 Aligned_cols=73 Identities=16% Similarity=0.133 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHH------HHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQ------KALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~------kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
..+.|..-|+++-...+|++|+++|+ +|+++.+-.||..- ...--..|.-+.+.|+|+.|+.||-.|--+.
T Consensus 660 k~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~ev---v~lee~wg~hl~~~~q~daainhfiea~~~~ 736 (1636)
T KOG3616|consen 660 KGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEV---VKLEEAWGDHLEQIGQLDAAINHFIEANCLI 736 (1636)
T ss_pred hhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHH---hhHHHHHhHHHHHHHhHHHHHHHHHHhhhHH
Confidence 35678999999999999999999986 56777776665443 3333456888999999999999998876655
Q ss_pred HH
Q 011692 307 KS 308 (479)
Q Consensus 307 k~ 308 (479)
+.
T Consensus 737 ka 738 (1636)
T KOG3616|consen 737 KA 738 (1636)
T ss_pred HH
Confidence 44
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.35 E-value=2.9 Score=42.18 Aligned_cols=88 Identities=18% Similarity=0.310 Sum_probs=69.7
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC----------ChhHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD----------SRHIAELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d----------~r~iAea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
+....++.--|.-++..|+|.+|...|+.|+-+.+.+.-.+ .+.+.-.|.|.+.||...++|=++++|+.
T Consensus 175 mkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~s 254 (329)
T KOG0545|consen 175 MKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCS 254 (329)
T ss_pred hhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHH
Confidence 44567788889999999999999999999999988874322 34566788999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011692 301 KAISVCKSRVQRLLNEVK 318 (479)
Q Consensus 301 kAL~I~k~rl~~l~~~l~ 318 (479)
..|.........+=..-+
T Consensus 255 eiL~~~~~nvKA~frRak 272 (329)
T KOG0545|consen 255 EILRHHPGNVKAYFRRAK 272 (329)
T ss_pred HHHhcCCchHHHHHHHHH
Confidence 888766555554444333
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.14 E-value=17 Score=32.28 Aligned_cols=46 Identities=15% Similarity=0.007 Sum_probs=36.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhh
Q 011692 72 KGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 72 ~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
++..++..||+-+|.++....+.. ||+... +..+++.=|..++++|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~----h~~~~~-~~~lh~~QG~if~~lA 47 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISR----HGEDES-SWLLHRLQGTIFYKLA 47 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHH----ccCCCc-hHHHHHHHhHHHHHHH
Confidence 466789999999999998888775 665433 3478888899999885
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=84.90 E-value=4.5 Score=40.81 Aligned_cols=82 Identities=15% Similarity=0.097 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH
Q 011692 216 LDVARAIAEKHWGDSMEKVDILSALAEVALE-REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294 (479)
Q Consensus 216 Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le-~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee 294 (479)
++.||.+|.+......-.-.+|...|.+-.. .++.+.|..-|+.+|+.... +..+-..|. .-+...++.+.
T Consensus 17 ~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-----~~~~~~~Y~---~~l~~~~d~~~ 88 (280)
T PF05843_consen 17 IEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-----DPDFWLEYL---DFLIKLNDINN 88 (280)
T ss_dssp HHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT------HHHHHHHH---HHHHHTT-HHH
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-----CHHHHHHHH---HHHHHhCcHHH
Confidence 4667777777654333356789999999666 67777799999999976432 333322222 44456789999
Q ss_pred HHHHHHHHHHH
Q 011692 295 AIPYCQKAISV 305 (479)
Q Consensus 295 Ai~~~ekAL~I 305 (479)
|...|++++..
T Consensus 89 aR~lfer~i~~ 99 (280)
T PF05843_consen 89 ARALFERAISS 99 (280)
T ss_dssp HHHHHHHHCCT
T ss_pred HHHHHHHHHHh
Confidence 99999998753
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.64 E-value=0.33 Score=50.60 Aligned_cols=76 Identities=13% Similarity=-0.060 Sum_probs=62.4
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
.|-+.....+..|..|..-|.|++++.+...||.+|..|+.|-. ..|.-|--.|.+...+|++.+|..++..
T Consensus 136 ~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~--------Dsa~~ykfrg~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 136 LFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINP--------DSAKGYKFRGYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred ccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCc--------ccccccchhhHHHHHhhchHHHHHHHHH
Confidence 33333334567899999999999999999999999999998843 4467788889999999999999999988
Q ss_pred HHHH
Q 011692 302 AISV 305 (479)
Q Consensus 302 AL~I 305 (479)
|+.+
T Consensus 208 a~kl 211 (377)
T KOG1308|consen 208 ACKL 211 (377)
T ss_pred HHhc
Confidence 8764
|
|
| >cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=84.48 E-value=8.5 Score=31.73 Aligned_cols=48 Identities=17% Similarity=0.119 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYY 112 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~pe~A~~y~ 112 (479)
.|..+..++..+-..|+|.+|+.||++|.+++.+.. +.........|.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr 53 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYE 53 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 478889999999999999999999999999887764 333333344433
|
This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear. |
| >PHA02537 M terminase endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=84.29 E-value=12 Score=37.32 Aligned_cols=113 Identities=19% Similarity=0.095 Sum_probs=71.2
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCC-----cchHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 011692 205 DESDLDLAWKMLDVARAIAEKHWGD-----SMEKVDILSALAEVALERED-IETSLSDYQKALTILERMVEPDSRHIAEL 278 (479)
Q Consensus 205 d~~dle~Awe~Le~Ar~Iyek~~~~-----~~~~A~v~~~LGev~le~g~-yeeAl~dy~kAL~I~~~llg~d~r~iAea 278 (479)
|.++|+.|+++.+.|+.--...++. .--+++-...-+......|+ |+-+ +++....|... ..-.....|..
T Consensus 95 D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~--~~~~~~~l~~~-~dmpd~vrAKl 171 (230)
T PHA02537 95 DIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPY--FLRVFLDLTTE-WDMPDEVRAKL 171 (230)
T ss_pred eccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChH--HHHHHHHHHhc-CCCChHHHHHH
Confidence 4689999988877776432222221 11245655566666666665 2222 23333344322 22234556788
Q ss_pred HHHHHHHHH---------cCCChhHHHHHHHHHHHH-----HHHHHHHHHHHHhhh
Q 011692 279 NFRICLCLE---------IGSKPQEAIPYCQKAISV-----CKSRVQRLLNEVKSL 320 (479)
Q Consensus 279 ~~~LG~ay~---------~~g~~eeAi~~~ekAL~I-----~k~rl~~l~~~l~~~ 320 (479)
|--+|..+. ..+++..|+.+|++|+.+ .+..|++|+..|+.+
T Consensus 172 ~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~GVK~~i~~l~~~lr~~ 227 (230)
T PHA02537 172 YKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCGVKKDIERLERRLKAL 227 (230)
T ss_pred HHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhc
Confidence 888999883 456788999999999999 567788888777644
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=84.23 E-value=5.8 Score=36.60 Aligned_cols=70 Identities=14% Similarity=0.138 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH-IAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~-iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
..++.++|+.......+- .|-++-+.|++.++...||. -=+.+|.|++.|.+.++|+.++.|+...|++-
T Consensus 31 s~~s~f~lAwaLV~S~~~----~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDT----EDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred hHHHHHHHHHHHHcccch----HHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 467888999888887664 46778888888888633222 34889999999999999999999998888764
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.93 E-value=1.7 Score=44.39 Aligned_cols=93 Identities=14% Similarity=0.049 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALERE--DIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g--~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee 294 (479)
++|+.++.+...-..+-.-+....+.|.+..| +|.+|.-.|++... .++ ....+++.++.|+..+|+|++
T Consensus 148 dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~----~~~----~t~~~lng~A~~~l~~~~~~e 219 (290)
T PF04733_consen 148 DLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSD----KFG----STPKLLNGLAVCHLQLGHYEE 219 (290)
T ss_dssp HHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC----CS------SHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh----ccC----CCHHHHHHHHHHHHHhCCHHH
Confidence 44555554432211122223334444555544 57777777776321 222 234668899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 011692 295 AIPYCQKAISVCKSRVQRLLNEV 317 (479)
Q Consensus 295 Ai~~~ekAL~I~k~rl~~l~~~l 317 (479)
|...+++|+..-...-..|-|.+
T Consensus 220 Ae~~L~~al~~~~~~~d~LaNli 242 (290)
T PF04733_consen 220 AEELLEEALEKDPNDPDTLANLI 242 (290)
T ss_dssp HHHHHHHHCCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCHHHHHHHH
Confidence 99999998876655555555543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.74 E-value=8.6 Score=37.47 Aligned_cols=87 Identities=23% Similarity=0.096 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|+.|...|.-++.- ..+..-.+-+-.+|+.|.+.++.|++|+..+. ... ++--.+......|.+|
T Consensus 103 ~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~-------t~~--~~~w~~~~~elrGDil 169 (207)
T COG2976 103 NNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLD-------TIK--EESWAAIVAELRGDIL 169 (207)
T ss_pred ccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHh-------ccc--cccHHHHHHHHhhhHH
Confidence 5677776666544421 11111234566789999999999998875543 222 2323455566789999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...|+-++|+..|++|+.+.
T Consensus 170 l~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 170 LAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHcCchHHHHHHHHHHHHcc
Confidence 99999999999999999874
|
|
| >cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=83.67 E-value=2.1 Score=35.57 Aligned_cols=37 Identities=11% Similarity=0.008 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 273 RHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 273 r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
...|..+.+.|+.+...|..++|+.+|++++.++..-
T Consensus 5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 3457778888899999999999999999999875544
|
This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear. |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=83.46 E-value=83 Score=35.34 Aligned_cols=155 Identities=16% Similarity=0.114 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 63 VEFADELMEKGTNAL-KESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 63 l~~A~~L~~~G~~~~-~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
..+|...+.+|..++ .-.+++.|..+++++..+... ...-..-..+.|.+.+.|+..
T Consensus 56 ~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~-------------------- 113 (608)
T PF10345_consen 56 RQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKT-------------------- 113 (608)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhc--------------------
Confidence 346788888998888 668999999999999888655 222222334444444444432
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
+...|...++.++.
T Consensus 114 ------------------------------------------------------------------~~~~a~~~l~~~I~ 127 (608)
T PF10345_consen 114 ------------------------------------------------------------------NPKAALKNLDKAIE 127 (608)
T ss_pred ------------------------------------------------------------------CHHHHHHHHHHHHH
Confidence 11116777777777
Q ss_pred HHHHhcCCcchHHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSAL-AEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~L-Gev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
.++... +.....++..| ...++..+++..|+..+++...+..... +.-....+.+-.++++.+.+..+++++..+
T Consensus 128 ~~~~~~--~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~--d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~ 203 (608)
T PF10345_consen 128 DSETYG--HSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRG--DPAVFVLASLSEALLHLRRGSPDDVLELLQ 203 (608)
T ss_pred HHhccC--chhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcC--CHHHHHHHHHHHHHHHhcCCCchhHHHHHH
Confidence 776532 12233344344 3344444899999999999988876432 222234455556777788888999999999
Q ss_pred HHHHHHHHH
Q 011692 301 KAISVCKSR 309 (479)
Q Consensus 301 kAL~I~k~r 309 (479)
+++......
T Consensus 204 ~~~~~~~~~ 212 (608)
T PF10345_consen 204 RAIAQARSL 212 (608)
T ss_pred HHHHHHhhc
Confidence 987765543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway | Back alignment and domain information |
|---|
Probab=83.09 E-value=1.1e+02 Score=37.40 Aligned_cols=211 Identities=12% Similarity=0.003 Sum_probs=120.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc-----CCCCC
Q 011692 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP-----LVSVP 133 (479)
Q Consensus 59 ~~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv-----LG~~~ 133 (479)
+.+..-........|.-++-.|+|.+|+..|.+|++++.. ..++.=.|.+|=.++.|++-++-...+. +...+
T Consensus 235 ~~~~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~--~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~ 312 (1185)
T PF08626_consen 235 RSRKRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKS--SNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLC 312 (1185)
T ss_pred ccchhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhh--cCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccC
Confidence 4455556777888999999999999999999999999766 3456666666666666666554332221 00000
Q ss_pred CCcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHH
Q 011692 134 KKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAW 213 (479)
Q Consensus 134 ~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Aw 213 (479)
... . ..+...+ ..... ....++..+. .... ... . .-.-..-..+--
T Consensus 313 ~~~-~---~~~~~s~-~~~~~--~~~~sP~~s~----~~~~--~~~----~-----------------~~~~~~l~~~i~ 358 (1185)
T PF08626_consen 313 PIS-S---STSSSSP-RNSSS--SSTQSPRNSV----SSSS--SSN----I-----------------DVNLVNLPNLIP 358 (1185)
T ss_pred CCC-C---ccCccCc-ccCCc--cCCCCCCccc----cCCC--ccc----c-----------------chhhccCHhhhh
Confidence 000 0 0000000 00000 0000000000 0000 000 0 000011122223
Q ss_pred HHHHHHHHHHHHhcC------CcchHHHHHHHHHHHHHhcC--------------------CHHHHHHHHHHHHHHHHHh
Q 011692 214 KMLDVARAIAEKHWG------DSMEKVDILSALAEVALERE--------------------DIETSLSDYQKALTILERM 267 (479)
Q Consensus 214 e~Le~Ar~Iyek~~~------~~~~~A~v~~~LGev~le~g--------------------~yeeAl~dy~kAL~I~~~l 267 (479)
++++.++..|.+... ..+=.+++..+++.+..... .-.++..+..+++.+....
T Consensus 359 ~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~ 438 (1185)
T PF08626_consen 359 DLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKD 438 (1185)
T ss_pred HHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhh
Confidence 456777777777652 12335678888888888888 8889999999999998876
Q ss_pred cCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 268 VEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 268 lg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
++..++ ..+|..|+.+|...|-+-++.=+.+.++-.+-
T Consensus 439 l~~~dq--i~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~ 476 (1185)
T PF08626_consen 439 LSVEDQ--IRIYSGLASVYGSLGFHRKKAFVLRELAVQLV 476 (1185)
T ss_pred CCHHHH--HHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 654443 58899999999999977666666666665553
|
To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways []. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.60 E-value=8 Score=42.36 Aligned_cols=101 Identities=21% Similarity=0.208 Sum_probs=68.5
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHH-----------------------------H
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDY-----------------------------Q 258 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy-----------------------------~ 258 (479)
+|++.+..++++|.+|++.+...|.-..++...|++-..+|+.+.|...| +
T Consensus 445 elElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~e 524 (677)
T KOG1915|consen 445 ELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFE 524 (677)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHH
Confidence 57788888999999999999877877777777777777777766665544 4
Q ss_pred HHHHHHHHhcCCC-Ch--hHHHHHHHHHHHHHcCC-----------ChhHHHHHHHHHHHHHHH
Q 011692 259 KALTILERMVEPD-SR--HIAELNFRICLCLEIGS-----------KPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 259 kAL~I~~~llg~d-~r--~iAea~~~LG~ay~~~g-----------~~eeAi~~~ekAL~I~k~ 308 (479)
++-.|.+.++... |. =|..+.|.++......+ ....|...|++|...++.
T Consensus 525 kaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~ 588 (677)
T KOG1915|consen 525 KARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKE 588 (677)
T ss_pred HHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHh
Confidence 4445555555432 22 24555555555555555 455677777777776653
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.09 E-value=29 Score=34.37 Aligned_cols=85 Identities=22% Similarity=0.187 Sum_probs=57.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERE-------DIETSLSDYQKALTILERMVEPDSRHIAELN 279 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g-------~yeeAl~dy~kAL~I~~~llg~d~r~iAea~ 279 (479)
.|+..|..+|.+|-.. ++. .-+.+..+||..|..-. ++..|+..|.++-... ...+.
T Consensus 127 ~d~~~A~~~~~~Aa~~-----g~~-~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----------~~~a~ 190 (292)
T COG0790 127 LDLVKALKYYEKAAKL-----GNV-EAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----------NPDAQ 190 (292)
T ss_pred cCHHHHHHHHHHHHHc-----CCh-hHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----------CHHHH
Confidence 4677787777766432 111 11455888888887763 2236666666665554 35889
Q ss_pred HHHHHHHHcC----CChhHHHHHHHHHHHHHH
Q 011692 280 FRICLCLEIG----SKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 280 ~~LG~ay~~~----g~~eeAi~~~ekAL~I~k 307 (479)
++||.+|... .++.+|+..|++|.+.-.
T Consensus 191 ~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 191 LLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999999774 378999999999987543
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.08 E-value=2.3 Score=47.77 Aligned_cols=68 Identities=19% Similarity=0.123 Sum_probs=56.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 237 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 237 ~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
+-+-+.-+++..+|..++..|..+|.....- ..++..|...-+|+.||..+.+.+.|+++|+.|-+.-
T Consensus 357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D--~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d 424 (872)
T KOG4814|consen 357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISD--NYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD 424 (872)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHhccch--hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence 3345677889999999999999998765432 2477789999999999999999999999999987654
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.92 E-value=21 Score=39.38 Aligned_cols=75 Identities=15% Similarity=0.106 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
..+.+++.-|-..+.+++|.+|...+++.|++... ....|.+|-.+.-||.++...|+..++.+...-++.+-++
T Consensus 443 l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana--ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkK 517 (629)
T KOG2300|consen 443 LEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA--EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKK 517 (629)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhc
Confidence 35778999999999999999999999999999833 3347889999999999999999999999888888876544
|
|
| >PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=81.42 E-value=78 Score=33.63 Aligned_cols=114 Identities=23% Similarity=0.232 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHHHhc--------CCC-ChhHHHHHHHH
Q 011692 232 EKVDILSALAEVALERED--------------------IETSLSDYQKALTILERMV--------EPD-SRHIAELNFRI 282 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~--------------------yeeAl~dy~kAL~I~~~ll--------g~d-~r~iAea~~~L 282 (479)
++|.+|..|-++.++..+ -..||.+|+.-+...+.-- ..+ -+.+-.+||.+
T Consensus 227 Elae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~ 306 (371)
T PF12309_consen 227 ELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHI 306 (371)
T ss_pred HHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHH
Confidence 456666666666655443 3578889998888877321 112 45577899999
Q ss_pred HHHHHcC--CChhHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCccccccccccccccccchhhhHHHHHHHHHH
Q 011692 283 CLCLEIG--SKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLS 360 (479)
Q Consensus 283 G~ay~~~--g~~eeAi~~~ekAL~I~k~rl~~l~~~l~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~Eieelk 360 (479)
|.+|... ++..+=+++++++|..++..+.--+..-. .....+.|++=-+
T Consensus 307 arl~~K~~~~~~~~~~~~l~~sl~~y~~vv~y~~~~~~-----------------------------~~~~~~~El~l~~ 357 (371)
T PF12309_consen 307 ARLYSKLITSDPKEQLENLEKSLEYYKWVVDYCEKHPE-----------------------------AAEEFEEELELCR 357 (371)
T ss_pred HHHHccccCCChHHHHHHHHHHHHHHHHHHHHHHhChh-----------------------------hHHHHHHHHHHHH
Confidence 9999876 56666666667777666666554322110 0123367787788
Q ss_pred hhHHHHHHHHHHHH
Q 011692 361 GLCGDLEKKLEDLQ 374 (479)
Q Consensus 361 ~ll~dl~~KieDlk 374 (479)
+++.=|-.||..|+
T Consensus 358 EM~~LLP~Ki~~l~ 371 (371)
T PF12309_consen 358 EMVQLLPLKINRLK 371 (371)
T ss_pred HHHHHHHHHHHhcC
Confidence 88888888888764
|
Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein. |
| >cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules | Back alignment and domain information |
|---|
Probab=81.31 E-value=14 Score=30.40 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 312 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~ 312 (479)
|.-+...|+-+...|+|++|+.+|.+||+.|...+..
T Consensus 6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~ 42 (77)
T cd02683 6 AKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKG 42 (77)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhh
Confidence 5556677788899999999999999999998777653
|
This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.1 bits (142), Expect = 2e-09
Identities = 36/252 (14%), Positives = 84/252 (33%), Gaps = 47/252 (18%)
Query: 172 SNNQDEAADDAVPGDNEE----DEEGNDGEN--------------VAEADEDESDLDLAW 213
+ D + E+ + + D ++ + D L L W
Sbjct: 11 TGEHQYQYKDILS-VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69
Query: 214 KMLDVARAIAEKHWGDSMEKVD---ILSALAEVALEREDIETSLSDYQKALTILERMVEP 270
+L + +K + + + ++S + + + + + L ++
Sbjct: 70 TLLSKQEEMVQKFVEEVLRI-NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 271 D--SRHIAELNFRICLCLEIGSKPQEAI-----PYCQK---AISVCKS-RVQRLL-NEVK 318
SR L R L LE+ +P + + K A+ VC S +VQ + ++
Sbjct: 129 YNVSRLQPYLKLRQAL-LEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 319 --SLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQV 376
+L + P + + +Q+ +Q D T + + ++ +L L +
Sbjct: 186 WLNLKNCNS---PETVLEMLQKLL--YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 377 ALFPKSILSEIL 388
+ +L +L
Sbjct: 241 KPYENCLL--VL 250
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 2e-07
Identities = 60/392 (15%), Positives = 117/392 (29%), Gaps = 116/392 (29%)
Query: 45 NNNCE---TSGAIADGEREKTVEFADELMEKGTN--ALKESDYG----EAAECFSRALEI 95
N +C+ T+ R K V D L T +L E + L+
Sbjct: 263 NLSCKILLTT-------RFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC 313
Query: 96 RVSHYGELALECVNAYYQYGRALLYKAQEEA---DPL-VSVPKKEGDS-QQGSDKDDSVK 150
R +L E +P +S+ +S + G D+ K
Sbjct: 314 RPQ---DLP-------------------REVLTTNPRRLSII---AESIRDGLATWDNWK 348
Query: 151 NAVNGESSTASVSSSAEQHGSSNNQDEAADDAV-PGDNEEDEEGNDGENVAEADEDESDL 209
+ VN + T + SS + + +V P +
Sbjct: 349 H-VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP------------PSA---------- 385
Query: 210 DLAWKMLDVARAIAEKHWGDSMEKV--DILSALAEVAL-EREDIETSLSDYQKALTILER 266
+ + W D ++ +++ L + +L E++ E+++S L + +
Sbjct: 386 -------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438
Query: 267 MVEPDSRH---IAELNFRICLCLEIGSKPQEA------IPY----CQKAISVCKSRVQRL 313
+ + H + N + P I + + + R
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-MVF 497
Query: 314 LN----EVKSLGESATSSAPAELDDGIQQSSSEFQN-DKLLTDKEAEIETLSGLCGDLEK 368
L+ E K +S +A + + +QQ + + D + + E L D
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQ----LKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 369 KLE---------DLQQVALFPKSILSEILGMA 391
K+E DL ++AL + I A
Sbjct: 554 KIEENLICSKYTDLLRIALMAED--EAIFEEA 583
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 8e-08
Identities = 31/304 (10%), Positives = 81/304 (26%), Gaps = 72/304 (23%)
Query: 64 EFADELMEKGTNALKESDYGEAAECFSRALEIR---VSHYG-----------ELALEC-- 107
++A L +KG + Y +A + ++ ALE++ V + + +E
Sbjct: 4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMST 63
Query: 108 ---------VNAYYQYGRALL-----------YKA--------QEEADPLVSVPKKEGDS 139
+ A +P++ +
Sbjct: 64 KALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAM 123
Query: 140 QQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENV 199
+ +K + A + ++ + + N + + G + + + +
Sbjct: 124 SKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDES 183
Query: 200 AEADED-------------------ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSAL 240
EAD++ + A ++ + + + L
Sbjct: 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243
Query: 241 AEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300
+ D + D +KA+ + P + + + + E Y
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIEL-----FPR---VNSYIYMALIMADRN-DSTEYYNYFD 294
Query: 301 KAIS 304
KA+
Sbjct: 295 KALK 298
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 3e-04
Identities = 32/245 (13%), Positives = 73/245 (29%), Gaps = 24/245 (9%)
Query: 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQ 123
+ ++E+ N S E A EL+ + L
Sbjct: 108 ASIEPMLERNLNKQAMSKLKEKFGDIDTATAT----PTELSTQPAKERKDKQENLPSVTS 163
Query: 124 EEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAV 183
+ + P+ + S++ D S S + S ++ +
Sbjct: 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQL 223
Query: 184 PGDNEEDEEGNDG----ENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSA 239
+NE+++ E+ ++D A + + +AI +V+
Sbjct: 224 DKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIK--KAIELF------PRVNSYIY 275
Query: 240 LAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC 299
+A + +R D + + KAL + + ++ + + + I +A
Sbjct: 276 MALIMADRNDSTEYYNYFDKALKL-----DSNN---SSVYYHRGQMNFILQNYDQAGKDF 327
Query: 300 QKAIS 304
KA
Sbjct: 328 DKAKE 332
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 31/291 (10%), Positives = 70/291 (24%), Gaps = 59/291 (20%)
Query: 64 EFADELMEKGTNALKESDYGEAAECFSRALEIR----VSHYG-----------ELALEC- 107
+A +L +G + ++ EA + + A+E+ V + E +E
Sbjct: 23 AYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFT 82
Query: 108 ----------VNAYYQYGRALL-----------YKAQEEADP---------LVSVPKKEG 137
A + A L K+
Sbjct: 83 TKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQA 142
Query: 138 DSQQGSDKDDSVKNAVNGESSTASVSS---SAEQHGSSNNQDEAAD-DAVPGDNEEDEEG 193
+ S S++S + H ++ + +++ D + +
Sbjct: 143 MKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQR 202
Query: 194 NDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETS 253
L + M + L + ++ +
Sbjct: 203 LYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDA 262
Query: 254 LSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304
Q+++ + P + L L QE + QKA+
Sbjct: 263 QVLLQESINL-----HPT----PNSYIFLALTLADKENSQEFFKFFQKAVD 304
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 6e-07
Identities = 24/170 (14%), Positives = 59/170 (34%), Gaps = 9/170 (5%)
Query: 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265
+ D + L D + + I +A+A + E ++ + +++ L LE
Sbjct: 128 KVDYEYCILELKKLLNQQLTGI-DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186
Query: 266 RMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSLGESAT 325
+ + ++ + L + S+ +E++ KAI + +N + +G+
Sbjct: 187 AL-HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCR-----INSMALIGQLYY 240
Query: 326 SSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLSGLCGDLEKKLEDLQQ 375
+++ E K +I + L K+ L+
Sbjct: 241 QRGECLRKLEYEEAEIEDAYKKASF--FFDILEMHAYKEALVNKISRLEH 288
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 33/277 (11%), Positives = 76/277 (27%), Gaps = 79/277 (28%)
Query: 55 ADGEREKTVEFADELMEKGTNALKESDYGEAAECFSRALEI----------RVSHYGEL- 103
+ +++ ++ +E G L +A F A++ R + + +
Sbjct: 15 TENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG 74
Query: 104 ----ALEC-----------VNAYYQYGRALLYKAQ-EEADPLVSVPKKEGDSQQGSDKDD 147
AL A Q G LL + + +EA
Sbjct: 75 KSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEA--------------------- 113
Query: 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDES 207
++ SN + +A + +E + A
Sbjct: 114 ---------------EDDFKKVLKSNPSENEEKEA-QSQLIKSDEMQRLRSQALNAFGSG 157
Query: 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM 267
D A LD + ++ AE ++ + ++SD + A +
Sbjct: 158 DYTAAIAFLDKILEVCVWD-------AELRELRAECFIKEGEPRKAISDLKAASKL---- 206
Query: 268 VEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304
+ D+ E ++I + ++ ++ +
Sbjct: 207 -KNDN---TEAFYKISTLYYQLGDHELSLSEVRECLK 239
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 5e-04
Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 6/73 (8%)
Query: 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHI-AELNFRICLCLEIGSK 291
K++ L AE + + S Y+ + EP RIC C K
Sbjct: 256 KLNKLIESAEELIRDGRYTDATSKYESVMKT-----EPSIAEYTVRSKERICHCFSKDEK 310
Query: 292 PQEAIPYCQKAIS 304
P EAI C + +
Sbjct: 311 PVEAIRVCSEVLQ 323
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 34/248 (13%), Positives = 81/248 (32%), Gaps = 16/248 (6%)
Query: 69 LMEKGTNALKESDYGEAAECFSRALEI--RVSHYGELALECVNAYYQYGRALLYKAQEEA 126
+ + +++ +A + + ++ +L + YY ++ +
Sbjct: 15 KINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLI-----YYSLM-CFRHQLMLDY 68
Query: 127 DPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEA------AD 180
+ + ++ + + G S+ EA A+
Sbjct: 69 LEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAE 128
Query: 181 DAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSAL 240
+P +++ E+ VAEA ++ + A I + H S+ + L +
Sbjct: 129 KELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI 188
Query: 241 AEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300
A + + + +L + AL + + + R IA I + Q A+ + Q
Sbjct: 189 AGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQ 246
Query: 301 KAISVCKS 308
KA V +
Sbjct: 247 KAAKVSRE 254
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 6e-05
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 4/110 (3%)
Query: 198 NVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDY 257
+A +D D A L+ A +A + L +A D + ++ +
Sbjct: 187 VIAGNYDDFKHYDKALPHLEAALELAMDI-QNDRFIAISLLNIANSYDRSGDDQMAVEHF 245
Query: 258 QKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307
QKA + E + ++ F + L + Q+A + ++ +
Sbjct: 246 QKAAKVSR---EKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 44.0 bits (104), Expect = 6e-05
Identities = 15/120 (12%), Positives = 46/120 (38%), Gaps = 4/120 (3%)
Query: 201 EADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKA 260
E + + ++L+ +K + K L ++++ ++ Y++A
Sbjct: 70 EPGKTYGNRPTVTELLETIETPQKKL--TGLLKYYSLFFRGMYEFDQKEYVEAIGYYREA 127
Query: 261 LTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLNEVKSL 320
L + D AE +F++ + ++ + +A+ + ++ + ++SL
Sbjct: 128 EKELPFV--SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 45.0 bits (107), Expect = 2e-05
Identities = 19/110 (17%), Positives = 37/110 (33%), Gaps = 2/110 (1%)
Query: 198 NVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDY 257
V + + D A + R + D + +A VAL D+ + +Y
Sbjct: 71 QVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEY 130
Query: 258 QKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307
+K+L ++ D IA + + EA + +A +
Sbjct: 131 EKSLVYAQQA--DDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 4/111 (3%)
Query: 198 NVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDY 257
+ D A + A+K GD + L + V + + + +
Sbjct: 31 MLGYVYAFMDRFDEARASFQALQQQAQKS-GDHTAEHRALHQVGMVERMAGNWDAARRCF 89
Query: 258 QKALTILERMVEPDSRHIAELNFRI-CLCLEIGSKPQEAIPYCQKAISVCK 307
+ +L + E D + + + + L G A +K++ +
Sbjct: 90 LEERELLASLPE-DPLAASANAYEVATVALHFG-DLAGARQEYEKSLVYAQ 138
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 32/242 (13%), Positives = 63/242 (26%), Gaps = 43/242 (17%)
Query: 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEE 125
A +G S++ A EC+ AL + Y A+ Q L A EE
Sbjct: 200 ASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCY--------EAFDQLVSNHLLTADEE 251
Query: 126 ADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPG 185
D ++ + + + +N S ++ A+D
Sbjct: 252 WDLVLKLNYSTYSKEDAAFLRSLYMLKLN--------------KTSHEDELRRAEDY--- 294
Query: 186 DNEEDEEGNDGE---NVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAE 242
+ + + A+ S + I + +D+
Sbjct: 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYN-------LDVYPLHLA 347
Query: 243 VALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302
E + + P+ A + + +K EA Y K+
Sbjct: 348 SLHESGEKNKLYLISNDLVDR-----HPEK---AVTWLAVGIYYLCVNKISEARRYFSKS 399
Query: 303 IS 304
+
Sbjct: 400 ST 401
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 33/249 (13%), Positives = 84/249 (33%), Gaps = 16/249 (6%)
Query: 68 ELMEKGTNALKESDYGEAAECFSRALEIR---------VSHYGELALECVNAYYQYGRAL 118
E + + ++ +A + +Y +
Sbjct: 14 EKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLE 73
Query: 119 LYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEA 178
+ +E+ + + + + + + N G ++ S+ +
Sbjct: 74 KMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRG-----MYELDQREYLSAIKFFKK 128
Query: 179 ADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILS 238
A+ + + E+ ++E+ + A I ++H ++ + S
Sbjct: 129 AESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188
Query: 239 ALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPY 298
A L+ + E ++S +QKA ++ E + + + I LC S+ ++AIPY
Sbjct: 189 LFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPY 246
Query: 299 CQKAISVCK 307
++AI+V +
Sbjct: 247 FKRAIAVFE 255
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 6e-04
Identities = 16/110 (14%), Positives = 34/110 (30%), Gaps = 3/110 (2%)
Query: 198 NVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDY 257
A D + A A ++AE L + + E ++ +
Sbjct: 189 LFATNFLDLKQYEDAISHFQKAYSMAEAE-KQPQLMGRTLYNIGLCKNSQSQYEDAIPYF 247
Query: 258 QKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307
++A+ + E + + F I K +A Y K ++ +
Sbjct: 248 KRAIAVFEES--NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 41.0 bits (96), Expect = 7e-04
Identities = 17/102 (16%), Positives = 39/102 (38%), Gaps = 2/102 (1%)
Query: 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 266
+ A K A + D +EK + ++E + S+ ++A I +
Sbjct: 117 REYLSAIKFFKKAESKLIF-VKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKE 175
Query: 267 MVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308
E + + + + + ++AI + QKA S+ ++
Sbjct: 176 -HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEA 216
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433 | Back alignment and structure |
|---|
Score = 44.1 bits (103), Expect = 7e-05
Identities = 18/115 (15%), Positives = 40/115 (34%), Gaps = 4/115 (3%)
Query: 197 ENVAEADEDESDLDLAWKMLDVARAIAEKHWGD----SMEKVDILSALAEVALEREDIET 252
NV E ++L++ EK ++ + ++ V L +D E
Sbjct: 299 RNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEG 358
Query: 253 SLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307
+L QK + + S ++A + ++ +KAI++ +
Sbjct: 359 ALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME 413
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 34/266 (12%), Positives = 74/266 (27%), Gaps = 79/266 (29%)
Query: 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYG---------------ELALEC--- 107
++ +E G L +A F A++ +Y + AL
Sbjct: 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62
Query: 108 --------VNAYYQYGRALLYKAQ-EEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESS 158
A Q G LL + + +EA
Sbjct: 63 VIALKMDFTAARLQRGHLLLKQGKLDEA-------------------------------- 90
Query: 159 TASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDV 218
++ SN ++ +A + +E + A D +D A LD
Sbjct: 91 ----EDDFKKVLKSNPSEQEEKEA-ESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145
Query: 219 ARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAEL 278
+ ++ AE ++ + ++SD + A + + D+ E
Sbjct: 146 ILEVCVWD-------AELRELRAECFIKEGEPRKAISDLKAASKL-----KSDN---TEA 190
Query: 279 NFRICLCLEIGSKPQEAIPYCQKAIS 304
++I + ++ ++ +
Sbjct: 191 FYKISTLYYQLGDHELSLSEVRECLK 216
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429 | Back alignment and structure |
|---|
Score = 41.4 bits (96), Expect = 5e-04
Identities = 11/129 (8%), Positives = 37/129 (28%), Gaps = 1/129 (0%)
Query: 180 DDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW-GDSMEKVDILS 238
D + GD + +E + E + + M + + ++ ++ +L
Sbjct: 274 ADMLTGDEQVWKEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLD 333
Query: 239 ALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPY 298
+ + +E +L + + ++ +A+
Sbjct: 334 CAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKN 393
Query: 299 CQKAISVCK 307
+ A + +
Sbjct: 394 LRLAFDIMR 402
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 40.6 bits (95), Expect = 7e-04
Identities = 37/274 (13%), Positives = 89/274 (32%), Gaps = 44/274 (16%)
Query: 53 AIADGEREKTVEFADELMEKGTNALKES------DYGEAAECFSRALEIRVSHYGELALE 106
AIA + + A E + K LK S DY AA +++A
Sbjct: 1 AIAAQKISE----AHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKA-------------- 42
Query: 107 CVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSA 166
A+ +K ++ + +E ++ + S+ +A +
Sbjct: 43 ----------AVAFKNAKQLEQAKDAYLQEAEAHA---NNRSLFHAAKAFEQAGMMLKDL 89
Query: 167 EQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226
++ + E A + D + + E DL A + A A+ E
Sbjct: 90 QRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEPL-DLSKAVHLYQQAAAVFENE 148
Query: 227 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286
+ +++ + + + ++ + + + QK ++ + M + + ++ + L
Sbjct: 149 -ERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK-CIAQVLVQL 206
Query: 287 EIGSKPQEAIPYCQKAISV---CKSRVQRLLNEV 317
A +++ S+ S L ++
Sbjct: 207 HRA-DYVAAQKCVRESYSIPGFSGSEDCAALEDL 239
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 39.7 bits (93), Expect = 9e-04
Identities = 12/70 (17%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSH------YGELALECVNAYYQYGRA 117
+ DE+++K + A++ G+A F + + + + +++ A
Sbjct: 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELA 61
Query: 118 LLYKAQEEAD 127
L YK D
Sbjct: 62 LAYKKNRNYD 71
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.8 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.75 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.69 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.68 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.67 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.67 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.65 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.64 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.63 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.63 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.63 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.61 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.6 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.58 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.57 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.57 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 99.56 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.56 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.54 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.54 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.52 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.51 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.5 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.49 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.49 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.49 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.49 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.48 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.47 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.46 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.45 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.45 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.45 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 99.45 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.45 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.43 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.43 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.42 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.42 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.41 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.4 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.4 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.39 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.38 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.38 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.38 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.38 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.37 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.37 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.36 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.35 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.35 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.34 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.33 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.33 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.33 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.32 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.32 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.31 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.31 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.3 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.29 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.29 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.28 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.28 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.28 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.28 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.28 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.28 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.27 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.27 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.26 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.26 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.25 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.24 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.24 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.24 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.24 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.24 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.23 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.22 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.22 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.22 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.2 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.19 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.18 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.18 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.18 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.18 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.17 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.17 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.17 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.16 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.16 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.16 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.16 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.15 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.15 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.14 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.14 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.14 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.13 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.13 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.13 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.12 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.12 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.11 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.11 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.11 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.1 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.1 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.1 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.08 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.07 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.07 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.07 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.07 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.06 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.06 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.05 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.04 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.03 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.03 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.02 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.0 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.0 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.99 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.99 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.98 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.98 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.98 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 98.98 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.97 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.96 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.95 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.95 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.93 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.91 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.91 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.9 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.89 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 98.86 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.85 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.85 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 98.81 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.8 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.79 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.79 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.77 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.77 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.76 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.76 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.75 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.75 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.74 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.74 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.74 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.73 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.72 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.7 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.68 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.66 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.64 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.64 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.61 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.61 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.59 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.58 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.57 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.55 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.53 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.53 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.53 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.52 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.5 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.31 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.29 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.27 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.21 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.2 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 98.17 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.17 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.17 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.16 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.14 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.14 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.11 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.03 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.93 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.93 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.91 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.89 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.82 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.82 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 97.73 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.64 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.58 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 97.56 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.52 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 97.42 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.36 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.34 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.13 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 97.07 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.06 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.9 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 96.79 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 96.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 96.68 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 96.57 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.32 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 96.15 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 95.61 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 95.55 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 95.28 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.27 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.02 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.84 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.35 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 94.13 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 93.94 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 93.42 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 93.1 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 93.0 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 91.42 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.26 | |
| 2cpt_A | 117 | SKD1 protein, vacuolar sorting protein 4B; MIT, he | 91.05 | |
| 1o9d_A | 260 | 14-3-3-like protein C; protein-binding, fusicoccin | 90.78 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.36 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 89.97 | |
| 2o8p_A | 227 | 14-3-3 domain containing protein; signaling protei | 89.85 | |
| 3iqu_A | 236 | 14-3-3 protein sigma; signal transuction, nucleus, | 89.85 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 89.49 | |
| 2v6x_A | 85 | Vacuolar protein sorting-associated protein 4; pro | 89.22 | |
| 2w2u_A | 83 | Hypothetical P60 katanin; hydrolase transport comp | 89.22 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.01 | |
| 1wfd_A | 93 | Hypothetical protein 1500032H18; MIT domain, struc | 88.83 | |
| 2v6y_A | 83 | AAA family ATPase, P60 katanin; MIT, VPS4, archaea | 88.72 | |
| 2br9_A | 234 | 14-3-3E, 14-3-3 protein epsilon; cell regulator pr | 88.31 | |
| 4a5x_A | 86 | MITD1, MIT domain-containing protein 1; protein tr | 87.73 | |
| 3uzd_A | 248 | 14-3-3 protein gamma; structural genomics, SGC, st | 87.03 | |
| 3c3r_A | 380 | Programmed cell death 6-interacting protein; ALIX | 86.95 | |
| 2vkj_A | 106 | TM1634; membrane protein, TPR motif joint center f | 86.81 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.35 | |
| 2crb_A | 97 | Nuclear receptor binding factor 2; NRBF-2, MIT dom | 86.06 | |
| 3r9m_A | 376 | BRO1 domain-containing protein BROX; protein bindi | 85.46 | |
| 2xs1_A | 704 | Programmed cell death 6-interacting protein; prote | 85.24 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 84.97 | |
| 2npm_A | 260 | 14-3-3 domain containing protein; cell regulator p | 84.92 | |
| 2crb_A | 97 | Nuclear receptor binding factor 2; NRBF-2, MIT dom | 84.83 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 84.82 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.02 | |
| 1zb1_A | 392 | BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking | 83.83 | |
| 3ubw_A | 261 | 14-3-3E, 14-3-3 protein epsilon; adapter protein, | 83.51 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 83.29 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 80.8 | |
| 3efz_A | 268 | 14-3-3 protein; 14-3-3, cell regulation, structura | 80.27 | |
| 2v6x_A | 85 | Vacuolar protein sorting-associated protein 4; pro | 80.24 |
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.1e-18 Score=186.43 Aligned_cols=157 Identities=15% Similarity=0.026 Sum_probs=148.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
.+..+..+++....+..+|+|++|..+|.++|+++..++|+.||.++.+|+++|.+|..+
T Consensus 305 ~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~-------------------- 364 (490)
T 3n71_A 305 MIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYL-------------------- 364 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT--------------------
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh--------------------
Confidence 355688888999999999999999999999999999999999999999999999999875
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
++|+.|..+++.++.
T Consensus 365 -----------------------------------------------------------------g~~~eA~~~~~~aL~ 379 (490)
T 3n71_A 365 -----------------------------------------------------------------QAYEEASHYARRMVD 379 (490)
T ss_dssp -----------------------------------------------------------------TCHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------cCHHHHHHHHHHHHH
Confidence 568889999999999
Q ss_pred HHHHhcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011692 222 IAEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 222 Iyek~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
|+++.++ .|+.++.+|++||.+|..+|+|++|+..|++||+|++..+|++||.+++++.+|+.++..+++|++|...|+
T Consensus 380 i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~ 459 (490)
T 3n71_A 380 GYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYH 459 (490)
T ss_dssp HHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988 589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHH
Q 011692 301 KAI 303 (479)
Q Consensus 301 kAL 303 (479)
++.
T Consensus 460 ~~~ 462 (490)
T 3n71_A 460 KMR 462 (490)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.7e-16 Score=147.77 Aligned_cols=160 Identities=20% Similarity=0.186 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..+..+|..++.+|+|++|+.+|.+++++....+|..+|..+.+|+++|.+++..
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------------- 98 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR---------------------- 98 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh----------------------
Confidence 3467788999999999999999999999999999999999999999999999999764
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|.++|+.++.++
T Consensus 99 ---------------------------------------------------------------g~~~~A~~~~~~al~~~ 115 (283)
T 3edt_B 99 ---------------------------------------------------------------GKYKEAEPLCKRALEIR 115 (283)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------ccHHHHHHHHHHHHHHH
Confidence 46788999999999999
Q ss_pred HHhcCC-cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 224 EKHWGD-SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 224 ek~~~~-~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
.+..+. ++..+.+|.+||.++..+|+|++|+..|++++.+.+...+++++..+.++++||.+|..+|++++|+.+|+++
T Consensus 116 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 116 EKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 887554 4788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 011692 303 ISVCKS 308 (479)
Q Consensus 303 L~I~k~ 308 (479)
+.+...
T Consensus 196 l~~~~~ 201 (283)
T 3edt_B 196 LTRAHE 201 (283)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-15 Score=141.12 Aligned_cols=160 Identities=20% Similarity=0.145 Sum_probs=147.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..+..+|..++..|+|++|+.+|.+++++.....|..++..+.+|+.+|.+++..
T Consensus 25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~---------------------- 82 (311)
T 3nf1_A 25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQ---------------------- 82 (311)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHC----------------------
Confidence 4577899999999999999999999999999999999999999999999999999875
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|..+|+.++.++
T Consensus 83 ---------------------------------------------------------------g~~~~A~~~~~~al~~~ 99 (311)
T 3nf1_A 83 ---------------------------------------------------------------NKYKDAANLLNDALAIR 99 (311)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------CCHHHHHHHHHHHHHHH
Confidence 46778999999999998
Q ss_pred HHhcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 224 EKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 224 ek~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
.+..+ ..+..+.+|..||.++...|+|++|+..|++++.+.+..++.+++..+.++++||.+|...|++++|+.+|+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 100 EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 87743 34678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 011692 303 ISVCKS 308 (479)
Q Consensus 303 L~I~k~ 308 (479)
+.+++.
T Consensus 180 ~~~~~~ 185 (311)
T 3nf1_A 180 LEIYQT 185 (311)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=3e-15 Score=139.23 Aligned_cols=158 Identities=18% Similarity=0.087 Sum_probs=141.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..+..+|..++.+|+|++|+.+|.+++.+..+.+|..+|..+.+|+++|.+++..
T Consensus 83 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~---------------------- 140 (283)
T 3edt_B 83 AVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQ---------------------- 140 (283)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT----------------------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHc----------------------
Confidence 3467889999999999999999999999999999999999999999999999999864
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|+++|+.++.++
T Consensus 141 ---------------------------------------------------------------g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 141 ---------------------------------------------------------------GKAEEVEYYYRRALEIY 157 (283)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------CCHHHHHHHHHHHHHHH
Confidence 46788999999999999
Q ss_pred HHhcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-----------------------------------
Q 011692 224 EKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM----------------------------------- 267 (479)
Q Consensus 224 ek~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~l----------------------------------- 267 (479)
.+..+ ..+..+.+|..||.++..+|+|++|+..|++++.+....
T Consensus 158 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (283)
T 3edt_B 158 ATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEY 237 (283)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 88754 357789999999999999999999999999999985542
Q ss_pred ------cCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 268 ------VEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 268 ------lg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
++.+++..+.++++||.+|..+|++++|+.+|++++++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 238 GSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 234678999999999999999999999999999999764
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=8.8e-16 Score=161.52 Aligned_cols=136 Identities=21% Similarity=0.172 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCC
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~ 142 (479)
+..+..++..+.+....|+|++|..+|.++|+++.+++|+.||.++.+|.++|.+|..+
T Consensus 295 ~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~--------------------- 353 (433)
T 3qww_A 295 VRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYM--------------------- 353 (433)
T ss_dssp HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHT---------------------
T ss_pred HHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhh---------------------
Confidence 34566777888888889999999999999999999999999999999999999999765
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
++|+.|..+++.++.|
T Consensus 354 ----------------------------------------------------------------g~~~eA~~~~~~aL~i 369 (433)
T 3qww_A 354 ----------------------------------------------------------------QDWEGALKYGQKIIKP 369 (433)
T ss_dssp ----------------------------------------------------------------TCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------cCHHHHHHHHHHHHHH
Confidence 5688899999999999
Q ss_pred HHHhcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 011692 223 AEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRIC 283 (479)
Q Consensus 223 yek~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG 283 (479)
+++.++ .|+.++..|++||.+|..+|+|++|+..|++||+|++..+|++||.+++++.+|.
T Consensus 370 ~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 370 YSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999987 5899999999999999999999999999999999999999999999999988874
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-15 Score=139.54 Aligned_cols=159 Identities=20% Similarity=0.190 Sum_probs=146.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..+..+|..++..|+|++|+.+|.+++++....+|..++..+.+|+.+|.+++..
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------- 124 (311)
T 3nf1_A 68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR----------------------- 124 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTT-----------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHc-----------------------
Confidence 356688899999999999999999999999999999999999999999999999764
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++++.|.++|+.++.++.
T Consensus 125 --------------------------------------------------------------g~~~~A~~~~~~a~~~~~ 142 (311)
T 3nf1_A 125 --------------------------------------------------------------GKYKEAEPLCKRALEIRE 142 (311)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------CcHHHHHHHHHHHHHHHH
Confidence 467889999999999987
Q ss_pred HhcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 225 KHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 225 k~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
+..+ ..+..+.++..||.++...|+|++|+..|++++.+.+...+.+++..+.++++||.+|...|++++|+.+|++++
T Consensus 143 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 143 KVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7633 356789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH
Q 011692 304 SVCKS 308 (479)
Q Consensus 304 ~I~k~ 308 (479)
.+...
T Consensus 223 ~~~~~ 227 (311)
T 3nf1_A 223 TRAHE 227 (311)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98655
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-15 Score=134.19 Aligned_cols=169 Identities=18% Similarity=0.170 Sum_probs=121.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++++|..++.+|+|++|+.+|.+|+++ +|..+.+|+.+|.+++.+++.+..+--. ..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~~~~~~a~~~~--~~---------- 64 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--------DPNNVETLLKLGKTYMDIGLPNDAIESL--KK---------- 64 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH--HH----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHH--HH----------
Confidence 567899999999999999999999999998 8999999999999999986543221000 00
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.. ...+... ... . ..+......++++.|.+.+..+..+
T Consensus 65 ---~~-~~~~~~~------~~~--------~---------------------~~~~~~~~~~~~~~a~~~~~~a~~~--- 102 (184)
T 3vtx_A 65 ---FV-VLDTTSA------EAY--------Y---------------------ILGSANFMIDEKQAAIDALQRAIAL--- 102 (184)
T ss_dssp ---HH-HHCCCCH------HHH--------H---------------------HHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred ---HH-hcCchhH------HHH--------H---------------------HHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 00 0000000 000 0 0000001224566666666666544
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+....++..||.++..+|+|++|+..|++++++. |..+.+|++||.+|..+|++++|+.+|++||++
T Consensus 103 ----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 103 ----NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK--------PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc--------chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 34457899999999999999999999999999884 333689999999999999999999999999987
Q ss_pred HHH
Q 011692 306 CKS 308 (479)
Q Consensus 306 ~k~ 308 (479)
-..
T Consensus 171 ~p~ 173 (184)
T 3vtx_A 171 EEK 173 (184)
T ss_dssp THH
T ss_pred Ccc
Confidence 554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.64 E-value=5e-15 Score=148.31 Aligned_cols=150 Identities=21% Similarity=0.307 Sum_probs=133.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcccc
Q 011692 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSV 149 (479)
Q Consensus 70 ~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~ 149 (479)
+-+|..++..|+|++|+.+|.+|+++.... ...+..+.+|+++|.+++..
T Consensus 107 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~~~~~---------------------------- 156 (383)
T 3ulq_A 107 FFRGMYELDQREYLSAIKFFKKAESKLIFV--KDRIEKAEFFFKMSESYYYM---------------------------- 156 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHT----------------------------
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHHHHHc----------------------------
Confidence 349999999999999999999999985543 34567999999999999875
Q ss_pred ccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCC
Q 011692 150 KNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGD 229 (479)
Q Consensus 150 ~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~ 229 (479)
++++.|...++.|+.++.+..+.
T Consensus 157 ---------------------------------------------------------~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 157 ---------------------------------------------------------KQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp ---------------------------------------------------------TCHHHHHHHHHHHHHHHHTCSTT
T ss_pred ---------------------------------------------------------CCHHHHHHHHHHHHHHHHhCccc
Confidence 46788999999999999988655
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 230 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 230 ~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
.+..+.+|++||.++..+|+|++|+.+|++||.+.++. .+++.++.+|++||.+|..+|++++|+.+|++|+.+++.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~ 256 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE--KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEE 256 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999999987 478889999999999999999999999999999997654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-14 Score=120.66 Aligned_cols=154 Identities=13% Similarity=0.123 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..+..+|..++..|+|++|+.+|.+++++..... .....+.+|+.+|.+++..
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~---------------------- 62 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG--DKAAERIAYSNLGNAYIFL---------------------- 62 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHHc----------------------
Confidence 4578899999999999999999999999999977642 2456778999999999875
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|...++.++.++
T Consensus 63 ---------------------------------------------------------------g~~~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 63 ---------------------------------------------------------------GEFETASEYYKKTLLLA 79 (164)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------CCHHHHHHHHHHHHHHH
Confidence 46788999999999998
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.+.. .....+.++.+||.++..+|+|++|+..|++++.+.+... +++..+.++++||.+|...|++++|+.+|++++
T Consensus 80 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 80 RQLK-DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK--DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhC-CcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc--chHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7763 3456789999999999999999999999999999988764 567789999999999999999999999999999
Q ss_pred HHHH
Q 011692 304 SVCK 307 (479)
Q Consensus 304 ~I~k 307 (479)
.+.+
T Consensus 157 ~~~~ 160 (164)
T 3ro3_A 157 EISR 160 (164)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 8864
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-15 Score=156.94 Aligned_cols=139 Identities=8% Similarity=-0.005 Sum_probs=129.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..++..-..+..+|+|++|+.+|.++|+++..++|+.||.++.+|.++|.+|..+
T Consensus 286 ~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~----------------------- 342 (429)
T 3qwp_A 286 EVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINL----------------------- 342 (429)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhh-----------------------
Confidence 456777777788899999999999999999999999999999999999999999875
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++|+.|..+++.++.||+
T Consensus 343 --------------------------------------------------------------g~~~eA~~~~~~~L~i~~ 360 (429)
T 3qwp_A 343 --------------------------------------------------------------GLLEEALFYGTRTMEPYR 360 (429)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------ccHHHHHHHHHHHHHhHH
Confidence 468889999999999999
Q ss_pred HhcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 225 KHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 225 k~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
+.++ .|+.++..|++||.+|..+|+|++|+..|++||+|++..+|++||.+++++.+|+.|+..
T Consensus 361 ~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e 425 (429)
T 3qwp_A 361 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDAN 425 (429)
T ss_dssp HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence 9877 689999999999999999999999999999999999999999999999999999998753
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-14 Score=127.12 Aligned_cols=155 Identities=17% Similarity=0.058 Sum_probs=136.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..+..+|..++.+|+|++|+.+|.+++++.... | ..+..+.+|+++|.+++..
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~~~~~~~l~~~~~~~----------------------- 79 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKS-G-DHTAEHRALHQVGMVERMA----------------------- 79 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-C-CHHHHHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHc-C-CcHHHHHHHHHHHHHHHHc-----------------------
Confidence 47788999999999999999999999999987654 2 4678899999999999875
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++++.|...++.|+.++.
T Consensus 80 --------------------------------------------------------------g~~~~A~~~~~~al~~~~ 97 (203)
T 3gw4_A 80 --------------------------------------------------------------GNWDAARRCFLEERELLA 97 (203)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------CCHHHHHHHHHHHHHHHH
Confidence 467889999999999998
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
+..+.....+.++.+||.++..+|+|++|+..|++++.+.+... +.+..+.++++||.+|...|++++|+.+|++++.
T Consensus 98 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 98 SLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQAD--DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 76544457899999999999999999999999999999987653 4566789999999999999999999999999999
Q ss_pred HHHH
Q 011692 305 VCKS 308 (479)
Q Consensus 305 I~k~ 308 (479)
+.+.
T Consensus 176 ~~~~ 179 (203)
T 3gw4_A 176 IFAE 179 (203)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8765
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.61 E-value=9.9e-15 Score=146.43 Aligned_cols=154 Identities=18% Similarity=0.131 Sum_probs=136.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
.--++.+|..++..|+|++|+.+|.+|+.+.... ...+..+.+|+++|.+++..
T Consensus 101 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~a~~~~~lg~~y~~~------------------------ 154 (378)
T 3q15_A 101 YYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFV--SDDIEKAEFHFKVAEAYYHM------------------------ 154 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGC--CCHHHHHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhC--CChHHHHHHHHHHHHHHHHc------------------------
Confidence 4457789999999999999999999999986554 23588999999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+++..|...++.|+.++.+
T Consensus 155 -------------------------------------------------------------~~~~~A~~~~~~al~~~~~ 173 (378)
T 3q15_A 155 -------------------------------------------------------------KQTHVSMYHILQALDIYQN 173 (378)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHHHHHHT
T ss_pred -------------------------------------------------------------CCcHHHHHHHHHHHHHHHh
Confidence 4678899999999999998
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
........+.+|++||.++..+|+|++|+.+|++||.+.++. .+.+.++.+|++||.+|..+|++++|+.+|++|+.+
T Consensus 174 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 174 HPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI--QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 765556789999999999999999999999999999999877 356688999999999999999999999999999997
Q ss_pred HHH
Q 011692 306 CKS 308 (479)
Q Consensus 306 ~k~ 308 (479)
++.
T Consensus 252 ~~~ 254 (378)
T 3q15_A 252 SRE 254 (378)
T ss_dssp HHH
T ss_pred HHh
Confidence 653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.60 E-value=6.8e-14 Score=140.07 Aligned_cols=156 Identities=13% Similarity=0.092 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..+..+|..++.+|+|++|+.+|.+|+++.... +...+..+.+|+++|.+++.+
T Consensus 141 ~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~~~~---------------------- 197 (383)
T 3ulq_A 141 EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEH-EAYNIRLLQCHSLFATNFLDL---------------------- 197 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC-STTHHHHHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHh----------------------
Confidence 467889999999999999999999999999997664 555788999999999999875
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|.+.|+.|+.++
T Consensus 198 ---------------------------------------------------------------g~~~~A~~~~~~al~~~ 214 (383)
T 3ulq_A 198 ---------------------------------------------------------------KQYEDAISHFQKAYSMA 214 (383)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------cCHHHHHHHHHHHHHHH
Confidence 46888999999999999
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.+.. .....+.+|.+||.++..+|+|++|+.+|++||.+.+... +.+..+.++++||.+|..+|++++|+.+|++|+
T Consensus 215 ~~~~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 291 (383)
T 3ulq_A 215 EAEK-QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN--ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGM 291 (383)
T ss_dssp HHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHcC-ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8773 4567899999999999999999999999999999988764 226679999999999999999999999999999
Q ss_pred HHHHH
Q 011692 304 SVCKS 308 (479)
Q Consensus 304 ~I~k~ 308 (479)
.+.+.
T Consensus 292 ~~~~~ 296 (383)
T 3ulq_A 292 AYSQK 296 (383)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99753
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.3e-14 Score=136.66 Aligned_cols=100 Identities=18% Similarity=0.085 Sum_probs=90.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|.++|+.|+.++.+........+.+|.+||.+|..+|+|++|+.+|++||.+.+..- +...++.+|++||.+|
T Consensus 169 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~~ 246 (293)
T 3u3w_A 169 GYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN--SMALIGQLYYQRGECL 246 (293)
T ss_dssp TCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--BCTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHH
Confidence 57889999999999999887566778899999999999999999999999999999998763 5677899999999999
Q ss_pred HcCCC-hhHHHHHHHHHHHHHHH
Q 011692 287 EIGSK-PQEAIPYCQKAISVCKS 308 (479)
Q Consensus 287 ~~~g~-~eeAi~~~ekAL~I~k~ 308 (479)
..+|+ +++|+.+|++|+.+++.
T Consensus 247 ~~~g~~~~~A~~~~~~Al~i~~~ 269 (293)
T 3u3w_A 247 RKLEYEEAEIEDAYKKASFFFDI 269 (293)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHHH
Confidence 99995 69999999999998763
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.1e-14 Score=158.43 Aligned_cols=172 Identities=17% Similarity=0.206 Sum_probs=129.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCC--CCCCCcCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQ 141 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG--~~~~~~~e~~~ 141 (479)
..+..|.++|..++.+|+|++|+.+|.+|+++ +|+.+.+|+++|.+|+.+++.+..+-- .+.+
T Consensus 7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~------- 71 (723)
T 4gyw_A 7 THADSLNNLANIKREQGNIEEAVRLYRKALEV--------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR------- 71 (723)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-------
Confidence 45789999999999999999999999999999 899999999999999998765332110 0000
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
.++... .. . -+.+......++++.|.+.|+.|+.
T Consensus 72 -----------l~P~~~---------~a-----~---------------------~nLg~~l~~~g~~~~A~~~~~kAl~ 105 (723)
T 4gyw_A 72 -----------ISPTFA---------DA-----Y---------------------SNMGNTLKEMQDVQGALQCYTRAIQ 105 (723)
T ss_dssp -----------HCTTCH---------HH-----H---------------------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -----------hCCCCH---------HH-----H---------------------HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 000000 00 0 0000011223567777777776665
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
+ .+..+.+|++||.++..+|+|++|+.+|++||++.. ..+.+|++||.+|..++++++|+++|++
T Consensus 106 l-------~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P--------~~~~a~~~L~~~l~~~g~~~~A~~~~~k 170 (723)
T 4gyw_A 106 I-------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP--------DFPDAYCNLAHCLQIVCDWTDYDERMKK 170 (723)
T ss_dssp H-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--------CCHHHHHHHHHHHHHTTCCTTHHHHHHH
T ss_pred h-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CChHHHhhhhhHHHhcccHHHHHHHHHH
Confidence 4 456789999999999999999999999999999843 2368999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 011692 302 AISVCKSRVQ 311 (479)
Q Consensus 302 AL~I~k~rl~ 311 (479)
++++....+.
T Consensus 171 al~l~~~~~~ 180 (723)
T 4gyw_A 171 LVSIVADQLE 180 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHhChhHHh
Confidence 9999877654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-13 Score=135.03 Aligned_cols=151 Identities=15% Similarity=0.051 Sum_probs=127.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+...|..+..+|+|++|+++|.+|+++.... | ..+..+.+|+++|.+|..+
T Consensus 37 ~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~~------------------------ 90 (292)
T 1qqe_A 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA-G-NEDEAGNTYVEAYKCFKSG------------------------ 90 (292)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-C-CHHHHHHHHHHHHHHHHHC------------------------
Confidence 3344455678888999999999999999997654 4 3456789999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|..+|+.|+.|+.+
T Consensus 91 -------------------------------------------------------------g~~~~A~~~~~~Al~l~~~ 109 (292)
T 1qqe_A 91 -------------------------------------------------------------GNSVNAVDSLENAIQIFTH 109 (292)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHHHHH
Confidence 4678899999999999976
Q ss_pred hcCCcchHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALER-EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~-g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.. .....+.+|.+||.+|... |+|++|+.+|++||.|.+..- +.+..+.+|++||.+|..+|+|++|+.+|++++.
T Consensus 110 ~g-~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 186 (292)
T 1qqe_A 110 RG-QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQ--SVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (292)
T ss_dssp TT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 53 3456789999999999996 999999999999999988642 3445688999999999999999999999999998
Q ss_pred HH
Q 011692 305 VC 306 (479)
Q Consensus 305 I~ 306 (479)
+.
T Consensus 187 ~~ 188 (292)
T 1qqe_A 187 SS 188 (292)
T ss_dssp TT
T ss_pred HH
Confidence 64
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=152.35 Aligned_cols=107 Identities=11% Similarity=0.041 Sum_probs=101.9
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 011692 205 DESDLDLAWKMLDVARAIAEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRIC 283 (479)
Q Consensus 205 d~~dle~Awe~Le~Ar~Iyek~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG 283 (479)
..++|+.|..+|+.++.|+++.++ .|+.++.++++||.+|..+|+|++|+.+|+++|.|+++++|++||.+|.+|+|||
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 456889999999999999999887 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 284 LCLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 284 ~ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
.+|..+|+|++|+.+|++||+|++..++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG 417 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHG 417 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999999888755
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.2e-13 Score=134.19 Aligned_cols=194 Identities=15% Similarity=0.068 Sum_probs=134.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCC--CCCCCcCCCC
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQ 140 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG--~~~~~~~e~~ 140 (479)
......++.++..++..|+|++|+++|.+++++.... .........++.+|..++..++.+...-- .+......
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-- 147 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYH--PEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLT-- 147 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCC--HHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCC--
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCC--hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhc--
Confidence 4567788889999999999999999999988864331 11245667778888888887554322100 00000000
Q ss_pred CCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHH
Q 011692 141 QGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVAR 220 (479)
Q Consensus 141 ~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar 220 (479)
..+.. ..... .. ..+..--..++++.|+++|+.|+
T Consensus 148 ---~~~~~----------------~~~~~-----~~---------------------~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 148 ---GIDVY----------------QNLYI-----EN---------------------AIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp ---SSCTT----------------HHHHH-----HH---------------------HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---CCchH----------------HHHHH-----HH---------------------HHHHHHHHcCCHHHHHHHHHHHH
Confidence 00000 00000 00 00000123478999999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHH-HHHH
Q 011692 221 AIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA-IPYC 299 (479)
Q Consensus 221 ~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeA-i~~~ 299 (479)
.++..........+.+|++||.+|..+|+|++|+.+|+++|.+.... .++..++.+|++||.+|..+|++++| +.+|
T Consensus 183 ~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~--~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~ 260 (293)
T 2qfc_A 183 KQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRI--NSMALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TBCSSHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 99988765333344899999999999999999999999999998653 45667899999999999999999999 8889
Q ss_pred HHHHHHHH
Q 011692 300 QKAISVCK 307 (479)
Q Consensus 300 ekAL~I~k 307 (479)
++|+.+++
T Consensus 261 ~~Al~~~~ 268 (293)
T 2qfc_A 261 KKASFFFD 268 (293)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-13 Score=135.07 Aligned_cols=154 Identities=14% Similarity=0.098 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCC
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~ 142 (479)
...+..+..+|..++.+|+|+.|+.+|.+|+++.... +...+..+.+|+++|.+++.+
T Consensus 138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~y~~~--------------------- 195 (378)
T 3q15_A 138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNH-PLYSIRTIQSLFVIAGNYDDF--------------------- 195 (378)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTS-TTCHHHHHHHHHHHHHHHHHT---------------------
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhC-CCchhhHHHHHHHHHHHHHHh---------------------
Confidence 4568899999999999999999999999999997653 333467899999999999875
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
++++.|.+.|+.|+.+
T Consensus 196 ----------------------------------------------------------------~~~~~A~~~~~~al~~ 211 (378)
T 3q15_A 196 ----------------------------------------------------------------KHYDKALPHLEAALEL 211 (378)
T ss_dssp ----------------------------------------------------------------TCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------CCHHHHHHHHHHHHHH
Confidence 4688899999999999
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
+.+.. .....+.+|.+||.++..+|+|++|+.+|++|+.+.+.. .++..+.++++||.+|..+|++++|+.+|++|
T Consensus 212 ~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 212 AMDIQ-NDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREK---VPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcC-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 97763 345789999999999999999999999999999999887 45566999999999999999999999999999
Q ss_pred HHHH
Q 011692 303 ISVC 306 (479)
Q Consensus 303 L~I~ 306 (479)
+.+.
T Consensus 288 l~~~ 291 (378)
T 3q15_A 288 LDHI 291 (378)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 9984
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-13 Score=133.96 Aligned_cols=148 Identities=18% Similarity=0.129 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcc
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de 147 (479)
.+...|..+..+|+|++|+++|.+|+++.... | .....+.+|.++|.++..+++
T Consensus 38 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~-~-~~~~~a~~~~~lg~~~~~~g~------------------------ 91 (307)
T 2ifu_A 38 EYAKAAVAFKNAKQLEQAKDAYLQEAEAHANN-R-SLFHAAKAFEQAGMMLKDLQR------------------------ 91 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHTTC------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHHHHHhCCC------------------------
Confidence 34445788999999999999999999997664 3 345778999999999987632
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011692 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 227 (479)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~ 227 (479)
++.|...|+.|+.||.+..
T Consensus 92 -------------------------------------------------------------~~~A~~~~~~Al~l~~~~g 110 (307)
T 2ifu_A 92 -------------------------------------------------------------MPEAVQYIEKASVMYVENG 110 (307)
T ss_dssp -------------------------------------------------------------GGGGHHHHHHHHHHHHTTT
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHHHHcC
Confidence 3334555555555554432
Q ss_pred CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 228 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 228 ~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
.....+.+|.+||.+|.. |+|++|+.+|++||.+.+..- +.+..+.+|++||.+|..+|+|++|+.+|++++.+.
T Consensus 111 -~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 185 (307)
T 2ifu_A 111 -TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE--RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMY 185 (307)
T ss_dssp -CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 223445666666666655 666666666666666655421 233445666666666666666666666666666554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=5.2e-14 Score=150.21 Aligned_cols=107 Identities=11% Similarity=0.000 Sum_probs=102.6
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 011692 205 DESDLDLAWKMLDVARAIAEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRIC 283 (479)
Q Consensus 205 d~~dle~Awe~Le~Ar~Iyek~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG 283 (479)
..++|+.|..+++.++.|+++.++ .|+.++.++++||.+|..+|+|++|+.+|+++|+|+++++|++||.+|.+|+|||
T Consensus 321 ~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 400 (490)
T 3n71_A 321 SEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAG 400 (490)
T ss_dssp TTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 568899999999999999999887 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 284 LCLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 284 ~ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
.+|..+|+|++|+.+|++||+|++..++
T Consensus 401 ~~~~~~G~~~eA~~~~~~Al~i~~~~lG 428 (490)
T 3n71_A 401 LTNWHAGHIEVGHGMICKAYAILLVTHG 428 (490)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999888765
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.8e-13 Score=127.03 Aligned_cols=141 Identities=21% Similarity=0.258 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHH----------------HHHHHHhhhhccCCcC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQ----------------YGRALLYKAQEEADPL 129 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~----------------YG~ALl~~ar~esdvL 129 (479)
+..++.+|..++..|+|++|+.+|.+++++ +|+.+.+|++ +|.+|+..
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-------- 67 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKN-------- 67 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC--------
Confidence 678899999999999999999999999998 8999999999 88888764
Q ss_pred CCCCCCcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChH
Q 011692 130 VSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDL 209 (479)
Q Consensus 130 G~~~~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dl 209 (479)
+++
T Consensus 68 -----------------------------------------------------------------------------g~~ 70 (208)
T 3urz_A 68 -----------------------------------------------------------------------------RNY 70 (208)
T ss_dssp -----------------------------------------------------------------------------TCH
T ss_pred -----------------------------------------------------------------------------CCH
Confidence 456
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH--------------
Q 011692 210 DLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHI-------------- 275 (479)
Q Consensus 210 e~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~i-------------- 275 (479)
+.|...|+.++.+ .|..+.+|.+||.++...|+|++|+.+|+++|++...... -+..+
T Consensus 71 ~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~-a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 71 DKAYLFYKELLQK-------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA-ANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHHhHHHHHH
Confidence 6777777777654 2455788999999999999999999999999887432110 00001
Q ss_pred --------------HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 276 --------------AELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 276 --------------Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
..++|++|+++...++|++|+.+|++||.+..
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 143 LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 12345666677777788888888888887654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.50 E-value=8e-13 Score=131.65 Aligned_cols=192 Identities=15% Similarity=0.115 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCC--CCCCCcCCCC
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQ 140 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG--~~~~~~~e~~ 140 (479)
...+..|+.+|..++..|+|++|+.+|.+++++... .....+.+|+.+|.+++..++.+...-- .....
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~----~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----- 115 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTE----DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL----- 115 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS----CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhccc----ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----
Confidence 466889999999999999999999999999998543 4678888999999999999765332100 00000
Q ss_pred CCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHH
Q 011692 141 QGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVAR 220 (479)
Q Consensus 141 ~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar 220 (479)
. ... .+....... . -..+...-..++++.|..+|+.++
T Consensus 116 ---------~-----------------~~~-~~~~~~~~~-~--------------~~l~~~~~~~g~~~~A~~~~~~al 153 (411)
T 4a1s_A 116 ---------A-----------------KSM-NDRLGEAKS-S--------------GNLGNTLKVMGRFDEAAICCERHL 153 (411)
T ss_dssp ---------H-----------------HHT-TCHHHHHHH-H--------------HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ---------H-----------------HHc-cCchHHHHH-H--------------HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0 000 000000000 0 000000123478999999999999
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 011692 221 AIAEKHWGDSMEKVDILSALAEVALERED-----------------IETSLSDYQKALTILERMVEPDSRHIAELNFRIC 283 (479)
Q Consensus 221 ~Iyek~~~~~~~~A~v~~~LGev~le~g~-----------------yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG 283 (479)
.++.+.. ..+..+.+|..||.++...|+ |++|+.+|++++.+.+.. .+++.++.+|++||
T Consensus 154 ~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la 230 (411)
T 4a1s_A 154 TLARQLG-DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL--GDRGAQGRACGNLG 230 (411)
T ss_dssp HHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHH
T ss_pred HHHHHhh-chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Confidence 9988764 456789999999999999999 999999999999999887 36688999999999
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 284 LCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 284 ~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
.+|...|+|++|+.+|++++.+...
T Consensus 231 ~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 231 NTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCChHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-13 Score=130.96 Aligned_cols=156 Identities=12% Similarity=0.045 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..|.++|..+..+|+|++|+.+|.+|+++.... |. ....+.+|+++|.+|...
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~-g~-~~~~a~~~~~lg~~~~~~----------------------- 130 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-GQ-FRRGANFKFELGEILEND----------------------- 130 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TC-HHHHHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-CC-HHHHHHHHHHHHHHHHHh-----------------------
Confidence 37788999999999999999999999999997553 32 344578999999988752
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
.++++.|.++|+.|+.++.
T Consensus 131 -------------------------------------------------------------lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 131 -------------------------------------------------------------LHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp -------------------------------------------------------------TCCHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------hcCHHHHHHHHHHHHHHHH
Confidence 0467889999999999987
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
... .....+.+|.+||.++..+|+|++|+.+|++++.+..... ..+...+.+|+++|.||..+|++++|+.+|++++.
T Consensus 150 ~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 150 QDQ-SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR-LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT-TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred hCC-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC-cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 653 2334678999999999999999999999999998864321 11235678999999999999999999999999998
Q ss_pred HHHH
Q 011692 305 VCKS 308 (479)
Q Consensus 305 I~k~ 308 (479)
+...
T Consensus 228 l~p~ 231 (292)
T 1qqe_A 228 EDPN 231 (292)
T ss_dssp C---
T ss_pred hCCC
Confidence 6554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.49 E-value=1.1e-12 Score=130.77 Aligned_cols=99 Identities=11% Similarity=0.115 Sum_probs=88.9
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 285 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 285 (479)
.++++.|.++|+.++.++.+.. ..+..+.+|..||.++..+|+|++|+.+|++++.+.+... +++..+.+|++||.+
T Consensus 99 ~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 99 LGDYNKAMQYHKHDLTLAKSMN-DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG--DRLSEGRALYNLGNV 175 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT--CHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcc-CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHH
Confidence 3688999999999999987763 4577899999999999999999999999999999998873 678899999999999
Q ss_pred HHcCCC-----------------hhHHHHHHHHHHHHHH
Q 011692 286 LEIGSK-----------------PQEAIPYCQKAISVCK 307 (479)
Q Consensus 286 y~~~g~-----------------~eeAi~~~ekAL~I~k 307 (479)
|...|+ |++|+.+|++++.+.+
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 999999 9999999999988753
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.4e-13 Score=149.24 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+.++|..++.+|+|++|+.+|.+|+++ +|+.+.+|+++|.+|+.+++.+..+--. +.
T Consensus 43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--------~P~~~~a~~nLg~~l~~~g~~~~A~~~~--~k---------- 102 (723)
T 4gyw_A 43 AAAHSNLASVLQQQGKLQEALMHYKEAIRI--------SPTFADAYSNMGNTLKEMQDVQGALQCY--TR---------- 102 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHH--HH----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHH--HH----------
Confidence 677899999999999999999999999998 8999999999999999987654321100 00
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.+. .++... .+ . -+.+......++++.|.+.|+.|+.+
T Consensus 103 --Al~--l~P~~~---------~a-----~---------------------~~Lg~~~~~~g~~~eAi~~~~~Al~l--- 140 (723)
T 4gyw_A 103 --AIQ--INPAFA---------DA-----H---------------------SNLASIHKDSGNIPEAIASYRTALKL--- 140 (723)
T ss_dssp --HHH--HCTTCH---------HH-----H---------------------HHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred --HHH--hCCCCH---------HH-----H---------------------HHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 000 000000 00 0 00001112346677777777777654
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMV 268 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ll 268 (479)
.+..+.+|.+||.++..+++|++|+..|+++++|....+
T Consensus 141 ----~P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~~ 179 (723)
T 4gyw_A 141 ----KPDFPDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQL 179 (723)
T ss_dssp ----CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHH
T ss_pred ----CCCChHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhHH
Confidence 456789999999999999999999999999999987653
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.3e-13 Score=126.06 Aligned_cols=133 Identities=18% Similarity=0.127 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++..|+|++|+.+|.+++++ .|..+.+|+++|.+|+..
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~------------------------ 52 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKE--------NPQDPEALYWLARTQLKL------------------------ 52 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------SSSCHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc------------------------
Confidence 356889999999999999999999999987 899999999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|...|+.++.+
T Consensus 53 -------------------------------------------------------------g~~~~A~~~~~~al~~--- 68 (217)
T 2pl2_A 53 -------------------------------------------------------------GLVNPALENGKTLVAR--- 68 (217)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHHHH---
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHh---
Confidence 3566777777777755
Q ss_pred hcCCcchHHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH
Q 011692 226 HWGDSMEKVDILSALAEVALER-----------EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~-----------g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee 294 (479)
.|..+.+|.+||.++..+ |+|++|+..|++++++.. .-+.+|++||.+|...|++++
T Consensus 69 ----~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P--------~~~~~~~~lg~~~~~~g~~~~ 136 (217)
T 2pl2_A 69 ----TPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP--------RYAPLHLQRGLVYALLGERDK 136 (217)
T ss_dssp ----CTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHH
T ss_pred ----CCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHcCChHH
Confidence 345688999999999999 999999999999999843 335899999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011692 295 AIPYCQKAISVC 306 (479)
Q Consensus 295 Ai~~~ekAL~I~ 306 (479)
|+.+|++|+++.
T Consensus 137 A~~~~~~al~~~ 148 (217)
T 2pl2_A 137 AEASLKQALALE 148 (217)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcc
Confidence 999999999874
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-12 Score=127.93 Aligned_cols=99 Identities=12% Similarity=0.119 Sum_probs=88.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERED--------------------IETSLSDYQKALTILER 266 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~--------------------yeeAl~dy~kAL~I~~~ 266 (479)
++++.|..+++.++.++.+.. .....+.+|..||.++...|+ |++|+..|++++.+.+.
T Consensus 101 g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 678899999999999988764 346679999999999999999 99999999999999988
Q ss_pred hcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 267 MVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 267 llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
. .+++..+.+|++||.+|...|+|++|+.+|++++.+...
T Consensus 180 ~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 219 (406)
T 3sf4_A 180 L--GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 219 (406)
T ss_dssp T--TCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHH
T ss_pred c--cCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHh
Confidence 7 467889999999999999999999999999999988654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-12 Score=120.27 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELAL-ECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~p-e~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
..|+.+|..++..|+|++|+.+|.+++++ .| ....+|+++|.+++.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~~~~~~~~~------------------------ 55 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL--------TNNQDSVTAYNCGVCADNI------------------------ 55 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTTCCHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc--------cCCCCcHHHHHHHHHHHHh------------------------
Confidence 68899999999999999999999999998 44 5668899999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|...|+.|+.+
T Consensus 56 -------------------------------------------------------------~~~~~A~~~~~~al~~--- 71 (228)
T 4i17_A 56 -------------------------------------------------------------KKYKEAADYFDIAIKK--- 71 (228)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHHHT---
T ss_pred -------------------------------------------------------------hcHHHHHHHHHHHHHh---
Confidence 3567787777777642
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+....+|..||.++..+|+|++|+..|++++.+..... .-...++.+|+++|.+|...|++++|+.+|+++|.+
T Consensus 72 ----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 72 ----NYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA-TIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp ----TCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred ----CcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999998753210 012357789999999999999999999999999987
Q ss_pred HHH
Q 011692 306 CKS 308 (479)
Q Consensus 306 ~k~ 308 (479)
...
T Consensus 147 ~p~ 149 (228)
T 4i17_A 147 TSK 149 (228)
T ss_dssp SCH
T ss_pred CCC
Confidence 554
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-12 Score=127.42 Aligned_cols=150 Identities=13% Similarity=0.099 Sum_probs=127.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..|.++|..+..+|+|++|+.+|.+|+++... .|. ....+.+|+++|.+|..
T Consensus 75 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~-~g~-~~~~a~~~~~lg~~~~~------------------------ 128 (307)
T 2ifu_A 75 AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVE-NGT-PDTAAMALDRAGKLMEP------------------------ 128 (307)
T ss_dssp HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHT-TTC-HHHHHHHHHHHHHHHTT------------------------
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHc------------------------
Confidence 3668889999999999999999999999999754 332 23567888888888731
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++++.|+++|+.|+.++.
T Consensus 129 --------------------------------------------------------------g~~~~A~~~~~~Al~~~~ 146 (307)
T 2ifu_A 129 --------------------------------------------------------------LDLSKAVHLYQQAAAVFE 146 (307)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------CCHHHHHHHHHHHHHHHH
Confidence 467889999999999998
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
... .....+.+|.+||.++..+|+|++|+.+|+++|.+.+... ..+..+.+++++|.+|..+|++++|+.+|++++
T Consensus 147 ~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al- 222 (307)
T 2ifu_A 147 NEE-RLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME--NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY- 222 (307)
T ss_dssp HTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-
T ss_pred hCC-ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-
Confidence 753 3445789999999999999999999999999999998764 255678899999999999999999999999998
Q ss_pred HH
Q 011692 305 VC 306 (479)
Q Consensus 305 I~ 306 (479)
+.
T Consensus 223 ~~ 224 (307)
T 2ifu_A 223 SI 224 (307)
T ss_dssp TS
T ss_pred CC
Confidence 53
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.3e-12 Score=124.72 Aligned_cols=154 Identities=16% Similarity=0.136 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhc
Q 011692 65 FADELMEKGTNALKESD--------------------YGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gd--------------------yeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~ 124 (479)
.+..+..+|..++..|+ |++|+.+|.+++.+.... ...+..+.+|+++|.+++..
T Consensus 126 ~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~--- 200 (406)
T 3sf4_A 126 EARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL--GDRAAQGRAFGNLGNTHYLL--- 200 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHH---
T ss_pred hHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhc--cCcHHHHHHHHHHHHHHHHc---
Confidence 36688999999999999 999999999999997765 35688899999999999876
Q ss_pred cCCcCCCCCCCcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCcccccccc
Q 011692 125 EADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADE 204 (479)
Q Consensus 125 esdvLG~~~~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~e 204 (479)
T Consensus 201 -------------------------------------------------------------------------------- 200 (406)
T 3sf4_A 201 -------------------------------------------------------------------------------- 200 (406)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 205 DESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 205 d~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
++++.|..+|+.++.++.+.. .....+.+|.+||.++..+|+|++|+.+|++++.+..... +++..+.+|++||.
T Consensus 201 --g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~ 275 (406)
T 3sf4_A 201 --GNFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK--DRAVEAQSCYSLGN 275 (406)
T ss_dssp --TBHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCc--CchHHHHHHHHHHH
Confidence 356667777777777776653 2445677788888888888888888888888887777652 45666777888888
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHH
Q 011692 285 CLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 285 ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
+|...|++++|+.+|++++.+...
T Consensus 276 ~~~~~g~~~~A~~~~~~a~~~~~~ 299 (406)
T 3sf4_A 276 TYTLLQDYEKAIDYHLKHLAIAQE 299 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHh
Confidence 888888888888888887777543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.45 E-value=2e-12 Score=120.64 Aligned_cols=143 Identities=14% Similarity=0.081 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++.+|+|++|+.+|.+++++ .|..+.+|+++|.+|+...+....
T Consensus 39 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~~~~~~~------------------ 92 (217)
T 2pl2_A 39 PEALYWLARTQLKLGLVNPALENGKTLVAR--------TPRYLGGYMVLSEAYVALYRQAED------------------ 92 (217)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHTCSS------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhhhhhhh------------------
Confidence 567889999999999999999999999998 799999999999999987321000
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
. .-..++++.|...|+.|+.+
T Consensus 93 --------------------~------------------------------------~~~~g~~~~A~~~~~~al~~--- 113 (217)
T 2pl2_A 93 --------------------R------------------------------------ERGKGYLEQALSVLKDAERV--- 113 (217)
T ss_dssp --------------------H------------------------------------HHHHHHHHHHHHHHHHHHHH---
T ss_pred --------------------h------------------------------------cccccCHHHHHHHHHHHHHh---
Confidence 0 00125777888777777765
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.|..+.+|.+||.++..+|+|++|+..|++++++. . -+.++++||.+|..+|++++|+.+|++++.+
T Consensus 114 ----~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~--------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 114 ----NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-D--------TPEIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-C--------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-c--------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999986 2 2588999999999999999999999999986
Q ss_pred H
Q 011692 306 C 306 (479)
Q Consensus 306 ~ 306 (479)
.
T Consensus 181 ~ 181 (217)
T 2pl2_A 181 A 181 (217)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.45 E-value=6.8e-12 Score=115.43 Aligned_cols=149 Identities=18% Similarity=0.117 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..+..+|..++..|+|++|+.+|.+++++. ....+|+.+|.+++..
T Consensus 3 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---------~~~~~~~~~~~~~~~~---------------------- 51 (258)
T 3uq3_A 3 SMADKEKAEGNKFYKARQFDEAIEHYNKAWELH---------KDITYLNNRAAAEYEK---------------------- 51 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------CCTHHHHHHHHHHHHT----------------------
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---------ccHHHHHHHHHHHHHc----------------------
Confidence 458899999999999999999999999999982 3467999999999875
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|.+.|+.++.+.
T Consensus 52 ---------------------------------------------------------------~~~~~A~~~~~~a~~~~ 68 (258)
T 3uq3_A 52 ---------------------------------------------------------------GEYETAISTLNDAVEQG 68 (258)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------ccHHHHHHHHHHHHHhC
Confidence 46788999999999888
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH-------------------HHhcCCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL-------------------ERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~-------------------~~llg~d~r~iAea~~~LG~ 284 (479)
.......+..+.+|..||.++...|+|++|+..|++++.+. ++.+ ..++..+.+|+++|.
T Consensus 69 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~ 147 (258)
T 3uq3_A 69 REMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEA-YVNPEKAEEARLEGK 147 (258)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHH-HcCcchHHHHHHHHH
Confidence 76644445568999999999999999999999999999952 1111 146777899999999
Q ss_pred HHHcCCChhHHHHHHHHHHHHHH
Q 011692 285 CLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 285 ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
+|...|++++|+.+|++++.+..
T Consensus 148 ~~~~~~~~~~A~~~~~~a~~~~~ 170 (258)
T 3uq3_A 148 EYFTKSDWPNAVKAYTEMIKRAP 170 (258)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHhcCHHHHHHHHHHHHhcCc
Confidence 99999999999999999998654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-13 Score=143.43 Aligned_cols=106 Identities=6% Similarity=-0.022 Sum_probs=98.6
Q ss_pred cChHHHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWG-DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~-~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
.+.++.|.++++.++.|+++.++ .++.++.++++||.+|..+|+|++|+.+|+++|.|+++++|++||.+|.+|+|||.
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~ 379 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK 379 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence 45678888888888888888776 57899999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 285 CLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 285 ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
+|..+|+|++|+.+|++|++|++..++
T Consensus 380 ~~~~~g~~~eA~~~~~~Al~i~~~~lG 406 (429)
T 3qwp_A 380 LQLHQGMFPQAMKNLRLAFDIMRVTHG 406 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999888765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.2e-13 Score=123.53 Aligned_cols=125 Identities=14% Similarity=0.048 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCc
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~d 146 (479)
..+..+|..++.+|+|++|+.+|.+|+++ .|....+|+.+|.+++.+
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~------------------------- 89 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKK--------NYNLANAYIGKSAAYRDM------------------------- 89 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCSHHHHHHHHHHHHHHT-------------------------
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHh--------CcchHHHHHHHHHHHHHc-------------------------
Confidence 45677999999999999999999999976 789999999999999875
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011692 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226 (479)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~ 226 (479)
++++.|...|+.++.++-..
T Consensus 90 ------------------------------------------------------------~~~~~A~~~~~~al~~~p~~ 109 (228)
T 4i17_A 90 ------------------------------------------------------------KNNQEYIATLTEGIKAVPGN 109 (228)
T ss_dssp ------------------------------------------------------------TCHHHHHHHHHHHHHHSTTC
T ss_pred ------------------------------------------------------------ccHHHHHHHHHHHHHHCCCc
Confidence 45777888888888765433
Q ss_pred cCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHcCCCh
Q 011692 227 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH--IAELNFRICLCLEIGSKP 292 (479)
Q Consensus 227 ~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~--iAea~~~LG~ay~~~g~~ 292 (479)
......++.+|..+|.++..+|+|++|+..|+++|++ +|. .+.+|++||.+|...++.
T Consensus 110 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 110 ATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--------TSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--------SCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--------CCCcccHHHHHHHHHHHHHHHHH
Confidence 2222456789999999999999999999999999987 344 578999999999888877
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.1e-12 Score=119.47 Aligned_cols=99 Identities=12% Similarity=0.115 Sum_probs=88.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERED--------------------IETSLSDYQKALTILER 266 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~--------------------yeeAl~dy~kAL~I~~~ 266 (479)
++++.|.+.++.++.++.+.. .....+.+|..||.++...|+ |++|+..|++++.+.+.
T Consensus 97 g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 97 GNFDEAIVCCQRHLDISRELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 578889999999999988764 345678999999999999999 99999999999999888
Q ss_pred hcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 267 MVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 267 llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
.. +.+..+.++++||.+|...|++++|+.+|++++.+...
T Consensus 176 ~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 215 (338)
T 3ro2_A 176 LG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKE 215 (338)
T ss_dssp HT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 73 67788999999999999999999999999999998654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.2e-12 Score=120.03 Aligned_cols=150 Identities=18% Similarity=0.174 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..|+..|..++..|+|++|+.+|.+++++ .....+..+.+|+.+|.+++..
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~~~~~~~~~~~~l~~~~~~~------------------------ 56 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQV----GTEDLKTLSAIYSQLGNAYFYL------------------------ 56 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCSCHHHHHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHHHHHc------------------------
Confidence 567889999999999999999999999997 2222334578999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|.++++.++.++.+
T Consensus 57 -------------------------------------------------------------g~~~~A~~~~~~al~~~~~ 75 (338)
T 3ro2_A 57 -------------------------------------------------------------HDYAKALEYHHHDLTLART 75 (338)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHHhhc
Confidence 4577889999999998877
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCC--------------
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK-------------- 291 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~-------------- 291 (479)
.. ..+..+.+|..||.++..+|+|++|+..|++++.+.+... +++.++.++++||.+|...|+
T Consensus 76 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 152 (338)
T 3ro2_A 76 IG-DQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN--DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFP 152 (338)
T ss_dssp HT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CC
T ss_pred cc-ccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhh
Confidence 63 4567899999999999999999999999999999998863 567789999999999999999
Q ss_pred ------hhHHHHHHHHHHHHHH
Q 011692 292 ------PQEAIPYCQKAISVCK 307 (479)
Q Consensus 292 ------~eeAi~~~ekAL~I~k 307 (479)
+++|+.+|++++.+.+
T Consensus 153 ~~a~~~~~~A~~~~~~a~~~~~ 174 (338)
T 3ro2_A 153 EDVRNALQAAVDLYEENLSLVT 174 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888887754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-12 Score=110.63 Aligned_cols=109 Identities=13% Similarity=0.200 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCC
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~ 142 (479)
.+.|..+.++|..++.+|+|++|+.+|.+|+++ +|..+.+|+++|.+|+.+
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~--------~p~~~~~~~nlg~~~~~~--------------------- 55 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL--------DPSNITFYNNKAAVYFEE--------------------- 55 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT---------------------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHHHh---------------------
Confidence 356788899999999999999999999999998 799999999999999876
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
++|+.|.+.++.|+.+
T Consensus 56 ----------------------------------------------------------------~~~~~A~~~~~~al~~ 71 (127)
T 4gcn_A 56 ----------------------------------------------------------------KKFAECVQFCEKAVEV 71 (127)
T ss_dssp ----------------------------------------------------------------TCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------hhHHHHHHHHHHHHHh
Confidence 4678899999999999
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
..........++.+|.+||.++..+++|++|+.+|+++|.+.
T Consensus 72 ~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 72 GRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred CcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 877766667789999999999999999999999999999863
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-12 Score=111.57 Aligned_cols=115 Identities=19% Similarity=0.207 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
+.|..+.++|..++.+|+|++|+.+|.+|+++ .|..+.+|+++|.+|+.+
T Consensus 11 ~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~~~~~~~~~---------------------- 60 (126)
T 4gco_A 11 ELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--------DPENAILYSNRAACLTKL---------------------- 60 (126)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHhhHHHhh----------------------
Confidence 34788999999999999999999999999998 799999999999999876
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|.+.|+.|+.+
T Consensus 61 ---------------------------------------------------------------~~~~~A~~~~~~al~~- 76 (126)
T 4gco_A 61 ---------------------------------------------------------------MEFQRALDDCDTCIRL- 76 (126)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHH-
T ss_pred ---------------------------------------------------------------ccHHHHHHHHHHHHHh-
Confidence 3567788888888765
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.+..+.+|.+||.++..+|+|++|+.+|+++|++.+ ++ .+++.+|+.|+
T Consensus 77 ------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P-----~~---~~a~~~l~~~l 125 (126)
T 4gco_A 77 ------DSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDP-----SN---EEAREGVRNCL 125 (126)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC---HHHHHHHHHHC
T ss_pred ------hhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc-----CC---HHHHHHHHHhc
Confidence 345678999999999999999999999999999843 33 47888888775
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.6e-13 Score=121.51 Aligned_cols=129 Identities=11% Similarity=0.092 Sum_probs=107.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccc
Q 011692 71 EKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVK 150 (479)
Q Consensus 71 ~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~ 150 (479)
.+|..+...|++++|+..|.+++.. .|+....+|.+|++++..
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~--------~p~~~~~~~~la~~y~~~----------------------------- 44 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS--------PRQKSIKGFYFAKLYYEA----------------------------- 44 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS--------HHHHHTTHHHHHHHHHHT-----------------------------
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc--------CcccHHHHHHHHHHHHHc-----------------------------
Confidence 3688888999999999999999986 789999999999999875
Q ss_pred cccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCc
Q 011692 151 NAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDS 230 (479)
Q Consensus 151 ~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~ 230 (479)
++|+.|.+.|+.|+.+ .
T Consensus 45 --------------------------------------------------------~~~~~A~~~~~~al~~-------~ 61 (150)
T 4ga2_A 45 --------------------------------------------------------KEYDLAKKYICTYINV-------Q 61 (150)
T ss_dssp --------------------------------------------------------TCHHHHHHHHHHHHHH-------C
T ss_pred --------------------------------------------------------CCHHHHHHHHHHHHHh-------C
Confidence 4677888888888765 3
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHH-HHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC-QKAISVCK 307 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~-ekAL~I~k 307 (479)
+..+.+|.+||.++..+|+|++|+.+|+++|++... -+.+|++||.+|...+++++|+.+| ++|+++..
T Consensus 62 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P 131 (150)
T 4ga2_A 62 ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT--------QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP 131 (150)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence 456889999999999999999999999999998432 2589999999999999999988765 89998743
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.5e-12 Score=109.88 Aligned_cols=91 Identities=16% Similarity=0.175 Sum_probs=81.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|+.|.+.|+.|+.+ .|..+.+|.+||.+++.+|+|++|+.+|++||.|.+... ..++.++.+|++||.+|
T Consensus 22 ~~~~~A~~~y~~Al~~-------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~a~~~~~lg~~~ 93 (127)
T 4gcn_A 22 KDFEKAHVHYDKAIEL-------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR-ADYKLIAKAMSRAGNAF 93 (127)
T ss_dssp TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHH
Confidence 4688899999888876 245688999999999999999999999999999988754 46788999999999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
..+++|++|+.+|++||.+
T Consensus 94 ~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 94 QKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999865
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-12 Score=118.39 Aligned_cols=142 Identities=15% Similarity=0.073 Sum_probs=118.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
++..+..++.+|..++..|+|++|+.+|.+++. | .+.+|+++|.+++..
T Consensus 2 s~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~----------~-~~~~~~~lg~~~~~~-------------------- 50 (213)
T 1hh8_A 2 SLVEAISLWNEGVLAADKKDWKGALDAFSAVQD----------P-HSRICFNIGCMYTIL-------------------- 50 (213)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHTSSS----------C-CHHHHHHHHHHHHHT--------------------
T ss_pred ChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHcC----------C-ChHHHHHHHHHHHHc--------------------
Confidence 356778899999999999999999999999841 1 467999999999875
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
++++.|.+.|+.|+.
T Consensus 51 -----------------------------------------------------------------g~~~~A~~~~~~al~ 65 (213)
T 1hh8_A 51 -----------------------------------------------------------------KNMTEAEKAFTRSIN 65 (213)
T ss_dssp -----------------------------------------------------------------TCHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------CCHHHHHHHHHHHHH
Confidence 457778888888876
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHcCCChh
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMV--------EPDSRHIAELNFRICLCLEIGSKPQ 293 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ll--------g~d~r~iAea~~~LG~ay~~~g~~e 293 (479)
+. +..+.+|.+||.++..+|+|++|+.+|++++.+..... ...++..+.+|++||.+|...|+++
T Consensus 66 ~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 138 (213)
T 1hh8_A 66 RD-------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK 138 (213)
T ss_dssp HC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHH
T ss_pred hC-------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHH
Confidence 63 34578999999999999999999999999998754321 0134567799999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISVC 306 (479)
Q Consensus 294 eAi~~~ekAL~I~ 306 (479)
+|+.+|++++.+.
T Consensus 139 ~A~~~~~~al~~~ 151 (213)
T 1hh8_A 139 KAEEQLALATSMK 151 (213)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcC
Confidence 9999999999764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.40 E-value=9.9e-12 Score=120.58 Aligned_cols=100 Identities=16% Similarity=0.189 Sum_probs=86.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|+..|+.|+.++.+.. .....+.+|++||.+|..+|+|++|+.+|++||.+.+.+ +.+++.++.+|++||.+|
T Consensus 129 ~~~~~Ai~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~nlg~~y 206 (293)
T 3u3w_A 129 VDYEYCILELKKLLNQQLTGI-DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEAL-HDNEEFDVKVRYNHAKAL 206 (293)
T ss_dssp SCHHHHHHHHHHHHHTCCCCS-CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhcccc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHH
Confidence 468889999999988654432 234578899999999999999999999999999998876 347888999999999999
Q ss_pred HcCCChhHHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
..+++|++|+.+|++||.+.+.
T Consensus 207 ~~~~~y~~A~~~~~~al~~~~~ 228 (293)
T 3u3w_A 207 YLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-12 Score=123.66 Aligned_cols=100 Identities=16% Similarity=0.193 Sum_probs=83.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|.+.|+.|+.++.+.. .....+.+|++||.+|..+|+|++|+.+|++||.+.+.... +....+.+|++||.+|
T Consensus 129 ~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~-~~~~~~~~~~nlg~~y 206 (293)
T 2qfc_A 129 VDYEYCILELKKLLNQQLTGI-DVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-NEEFDVKVRYNHAKAL 206 (293)
T ss_dssp SCHHHHHHHHHHHHTTCCCSS-CTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCc-cccchHHHHHhHHHHH
Confidence 578889888888887665432 23456899999999999999999999999999999887542 2233448999999999
Q ss_pred HcCCChhHHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
..+|+|++|+.+|++||.+...
T Consensus 207 ~~~~~y~~Al~~~~kal~~~~~ 228 (293)
T 2qfc_A 207 YLDSRYEESLYQVNKAIEISCR 228 (293)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.2e-11 Score=106.82 Aligned_cols=141 Identities=18% Similarity=0.197 Sum_probs=115.6
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCC
Q 011692 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQ 140 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~ 140 (479)
.....+..++.+|..++..|+|++|+.+|.+++++ .|..+.+|+++|.+++..
T Consensus 8 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~~a~~~~~~------------------- 60 (166)
T 1a17_A 8 GALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRT------------------- 60 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHT-------------------
T ss_pred hHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHc-------------------
Confidence 45677999999999999999999999999999997 688899999999999875
Q ss_pred CCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHH
Q 011692 141 QGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVAR 220 (479)
Q Consensus 141 ~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar 220 (479)
++++.|..+|+.++
T Consensus 61 ------------------------------------------------------------------~~~~~A~~~~~~a~ 74 (166)
T 1a17_A 61 ------------------------------------------------------------------ECYGYALGDATRAI 74 (166)
T ss_dssp ------------------------------------------------------------------TCHHHHHHHHHHHH
T ss_pred ------------------------------------------------------------------CCHHHHHHHHHHHH
Confidence 35777888888887
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011692 221 AIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 221 ~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
.+. +....+|..+|.++..+|+|++|+..|++++.+.. .+.. +..++.++..+...+++++|+.+|+
T Consensus 75 ~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-----~~~~-~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 75 ELD-------KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-----HDKD-AKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp HHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TCHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhC-------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-----CCHH-HHHHHHHHHHHHHHHHHHHHHHccc
Confidence 663 34578999999999999999999999999998743 2322 3344556666888899999999998
Q ss_pred HHHHHHH
Q 011692 301 KAISVCK 307 (479)
Q Consensus 301 kAL~I~k 307 (479)
++..++.
T Consensus 142 ~~~~~~~ 148 (166)
T 1a17_A 142 HKRSVVD 148 (166)
T ss_dssp HHHHHHH
T ss_pred chHHHhc
Confidence 8777653
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=2.5e-12 Score=132.49 Aligned_cols=53 Identities=11% Similarity=-0.038 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhh
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQ 123 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar 123 (479)
-..+..+..+|..+...|+|++|+.+|.+|+++ +|.++.+|+++|.+|+.+++
T Consensus 94 p~~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--------~P~~~~a~~~~g~~l~~~g~ 146 (382)
T 2h6f_A 94 DKFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSLQK 146 (382)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--------CccCHHHHHHHHHHHHHccc
Confidence 346778999999999999999999999999998 89999999999999998753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.38 E-value=7.6e-12 Score=118.49 Aligned_cols=143 Identities=13% Similarity=0.111 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++..|+|++|+.+|.++++.. +.++....+||++|.+++..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~------------------------ 65 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-----RTHEWAADAQFYLARAYYQN------------------------ 65 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-----SCSTTHHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----CCCcchHHHHHHHHHHHHHh------------------------
Confidence 6789999999999999999999999999862 34555599999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|...|+.++.++-.
T Consensus 66 -------------------------------------------------------------~~~~~A~~~~~~~l~~~p~ 84 (261)
T 3qky_A 66 -------------------------------------------------------------KEYLLAASEYERFIQIYQI 84 (261)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHHHHCTT
T ss_pred -------------------------------------------------------------CcHHHHHHHHHHHHHHCCC
Confidence 4677888888888776522
Q ss_pred hcCCcchHHHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH--------------HHHH
Q 011692 226 HWGDSMEKVDILSALAEVALE--------REDIETSLSDYQKALTILERMVEPDSRHIAELN--------------FRIC 283 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le--------~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~--------------~~LG 283 (479)
.+....+|+.||.++.. +|+|++|+..|++++.+. |+++....++ ++||
T Consensus 85 ----~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~la 155 (261)
T 3qky_A 85 ----DPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDATQKIRELRAKLARKQYEAA 155 (261)
T ss_dssp ----CTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----CchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999 999999999999999874 3444444444 9999
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHH
Q 011692 284 LCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 284 ~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
.+|...|+|++|+.+|+++|....
T Consensus 156 ~~~~~~g~~~~A~~~~~~~l~~~p 179 (261)
T 3qky_A 156 RLYERRELYEAAAVTYEAVFDAYP 179 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHccCHHHHHHHHHHHHHHCC
Confidence 999999999999999999998643
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.38 E-value=5.7e-12 Score=123.01 Aligned_cols=97 Identities=9% Similarity=0.033 Sum_probs=80.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEP---DSRHIAELNFRIC 283 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~---d~r~iAea~~~LG 283 (479)
++++.|...|+.++.+ .+....+|..||.++..+|+|++|+..|++++.+.....++ .++..+.+|++||
T Consensus 265 g~~~~A~~~~~~al~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (368)
T 1fch_A 265 NQSEEAVAAYRRALEL-------QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLR 337 (368)
T ss_dssp TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHH
Confidence 4577788888877765 23567899999999999999999999999999999877433 3556789999999
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHHHHH
Q 011692 284 LCLEIGSKPQEAIPYCQKAISVCKSRV 310 (479)
Q Consensus 284 ~ay~~~g~~eeAi~~~ekAL~I~k~rl 310 (479)
.+|..+|++++|..+++++|++++..+
T Consensus 338 ~~~~~~g~~~~A~~~~~~~l~~~~~~~ 364 (368)
T 1fch_A 338 LALSMLGQSDAYGAADARDLSTLLTMF 364 (368)
T ss_dssp HHHHHHTCGGGHHHHHTTCHHHHHHHT
T ss_pred HHHHHhCChHhHHHhHHHHHHHHHHhc
Confidence 999999999999999999999877543
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.2e-11 Score=113.77 Aligned_cols=167 Identities=14% Similarity=0.049 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++..|+|++|+.+|.+++++... +++..+..+.+|+.+|.+++..++.+..+--- .
T Consensus 38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~--~----------- 103 (258)
T 3uq3_A 38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGRE-MRADYKVISKSFARIGNAYHKLGDLKKTIEYY--Q----------- 103 (258)
T ss_dssp THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH--H-----------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc-cccchHHHHHHHHHHHHHHHHcccHHHHHHHH--H-----------
Confidence 356889999999999999999999999998543 33445666999999999999875442210000 0
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+... . ....+.-.....++.|+.+|.+
T Consensus 104 ----------------------~a~~---~----------------------------~~~~~~~~~~~~~~~a~~~~~~ 130 (258)
T 3uq3_A 104 ----------------------KSLT---E----------------------------HRTADILTKLRNAEKELKKAEA 130 (258)
T ss_dssp ----------------------HHHH---H----------------------------CCCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------HHHh---c----------------------------CchhHHHHHHhHHHHHHHHHHH
Confidence 0000 0 0001122222334455555555
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.....+..+.+|..+|.++...|+|++|+..|++++.+... ...+|++||.+|...|++++|+.+|++++.+
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 131 EAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE--------DARGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcc--------cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 54445678899999999999999999999999999987432 2588999999999999999999999999886
Q ss_pred HH
Q 011692 306 CK 307 (479)
Q Consensus 306 ~k 307 (479)
..
T Consensus 203 ~~ 204 (258)
T 3uq3_A 203 DP 204 (258)
T ss_dssp CT
T ss_pred CH
Confidence 43
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-11 Score=125.95 Aligned_cols=147 Identities=16% Similarity=0.138 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGE-LALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge-~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
+..+..+|..++.+|+|++|+++|.+|++|....++. .+|..+.+|+++|.+++.+
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~----------------------- 107 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM----------------------- 107 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc-----------------------
Confidence 5567889999999999999999999999999988875 6899999999999999886
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++++.|..+|+.++.|+.
T Consensus 108 --------------------------------------------------------------g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 108 --------------------------------------------------------------GRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------CChHHHHHHHHHHHHHhH
Confidence 356677788888888887
Q ss_pred HhcC-CcchHHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH---HcCCChhHHHHH
Q 011692 225 KHWG-DSMEKVDILSALAEVALER--EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL---EIGSKPQEAIPY 298 (479)
Q Consensus 225 k~~~-~~~~~A~v~~~LGev~le~--g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay---~~~g~~eeAi~~ 298 (479)
+... .++..+.+|..+|.+++.. ++|++|+.+|++||.+. |++ +++++++|.++ ...+++++|+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-----p~~---~~~~~~~~~~~~~l~~~~~~~~al~~ 197 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-----PKN---PEFTSGLAIASYRLDNWPPSQNAIDP 197 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-----TTC---HHHHHHHHHHHHHHHHSCCCCCTHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHhcCchHHHHHHHH
Confidence 7654 3456777888887766654 46888888888888774 233 35556666553 445667778888
Q ss_pred HHHHHHH
Q 011692 299 CQKAISV 305 (479)
Q Consensus 299 ~ekAL~I 305 (479)
|++||.+
T Consensus 198 ~~~al~l 204 (472)
T 4g1t_A 198 LRQAIRL 204 (472)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 8777765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.7e-11 Score=120.61 Aligned_cols=91 Identities=19% Similarity=0.180 Sum_probs=72.2
Q ss_pred cCcChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 011692 204 EDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRIC 283 (479)
Q Consensus 204 ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG 283 (479)
...++++.|..+|+.++.+... ...+.+|..||.++...|+|++|+..|++++.+.. ..+.+|++||
T Consensus 188 ~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~ 254 (365)
T 4eqf_A 188 VDSSVLEGVKELYLEAAHQNGD-----MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP--------EDYSLWNRLG 254 (365)
T ss_dssp -CCHHHHHHHHHHHHHHHHSCS-----SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--------TCHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcC-----ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--------CCHHHHHHHH
Confidence 3456777777777777655211 11577999999999999999999999999998742 2367899999
Q ss_pred HHHHcCCChhHHHHHHHHHHHHHH
Q 011692 284 LCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 284 ~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
.+|...|++++|+.+|++++.+..
T Consensus 255 ~~~~~~g~~~~A~~~~~~al~~~p 278 (365)
T 4eqf_A 255 ATLANGDRSEEAVEAYTRALEIQP 278 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999998743
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=121.65 Aligned_cols=168 Identities=16% Similarity=0.079 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
+..++.+|..++..|+|++|+.+|.+++++ +|..+.+|+.+|.+++..++.+..+ |-....
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--------- 127 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQ--------DPGDAEAWQFLGITQAENENEQAAIVALQRCLE--------- 127 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------
Confidence 446889999999999999999999999998 7888999999999999874332110 000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
.++... .. .. ..+..-...++++.|..+|+.++.+.
T Consensus 128 ---------~~p~~~------~~--------~~---------------------~l~~~~~~~g~~~~A~~~~~~al~~~ 163 (365)
T 4eqf_A 128 ---------LQPNNL------KA--------LM---------------------ALAVSYTNTSHQQDACEALKNWIKQN 163 (365)
T ss_dssp ---------HCTTCH------HH--------HH---------------------HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ---------cCCCCH------HH--------HH---------------------HHHHHHHccccHHHHHHHHHHHHHhC
Confidence 000000 00 00 00000011234444444444444432
Q ss_pred HHhcCCcchHHHHHH----------HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChh
Q 011692 224 EKHWGDSMEKVDILS----------ALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 293 (479)
Q Consensus 224 ek~~~~~~~~A~v~~----------~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~e 293 (479)
.. ...++. .||.++...|+|++|+..|++++.+.. ++ ..+.+|++||.+|...|+++
T Consensus 164 p~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-----~~-~~~~~~~~l~~~~~~~g~~~ 230 (365)
T 4eqf_A 164 PK-------YKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNG-----DM-IDPDLQTGLGVLFHLSGEFN 230 (365)
T ss_dssp HH-------HHCC-------------------CCHHHHHHHHHHHHHHHHSC-----SS-CCHHHHHHHHHHHHHHTCHH
T ss_pred cc-------chHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCc-----Cc-cCHHHHHHHHHHHHHCCCHH
Confidence 21 112222 235555666666666666666555421 10 03678999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISVCK 307 (479)
Q Consensus 294 eAi~~~ekAL~I~k 307 (479)
+|+.+|++++.+..
T Consensus 231 ~A~~~~~~al~~~p 244 (365)
T 4eqf_A 231 RAIDAFNAALTVRP 244 (365)
T ss_dssp HHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhCC
Confidence 99999999998754
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.35 E-value=4.5e-11 Score=113.13 Aligned_cols=169 Identities=14% Similarity=0.100 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
...++.+|..++.+|+|++|+.+|.+++.+. +.++....+||++|.+++..+.. .
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~lg~~~~~~~~~--------~------------ 106 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIY-----QIDPRVPQAEYERAMCYYKLSPP--------Y------------ 106 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCTTHHHHHHHHHHHHHHHCCC--------T------------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC-----CCCchhHHHHHHHHHHHHHhccc--------c------------
Confidence 5678999999999999999999999999972 44678899999999999986210 0
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.-+.++++.|...|+.++.++-.
T Consensus 107 ---------------------------------------------------------~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 107 ---------------------------------------------------------ELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp ---------------------------------------------------------TSCCHHHHHHHHHHHHHHHHCTT
T ss_pred ---------------------------------------------------------cccchhHHHHHHHHHHHHHHCcC
Confidence 01236788888888887766532
Q ss_pred hcCC----------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC------
Q 011692 226 HWGD----------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG------ 289 (479)
Q Consensus 226 ~~~~----------~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~------ 289 (479)
.... ...++..++.||.++..+|+|++|+..|++++.+. |+++....++++||.+|..+
T Consensus 130 ~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-----p~~~~~~~a~~~l~~~~~~~g~~~~~ 204 (261)
T 3qky_A 130 HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY-----PDTPWADDALVGAMRAYIAYAEQSVR 204 (261)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHHHHHHHTSCG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhcccchh
Confidence 2110 01234445999999999999999999999999864 46667889999999999977
Q ss_pred ----CChhHHHHHHHHHHHHH---------HHHHHHHHHHHhhhc
Q 011692 290 ----SKPQEAIPYCQKAISVC---------KSRVQRLLNEVKSLG 321 (479)
Q Consensus 290 ----g~~eeAi~~~ekAL~I~---------k~rl~~l~~~l~~~~ 321 (479)
+++++|+.+|++++... ...+..+...+....
T Consensus 205 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~~~~~~ 249 (261)
T 3qky_A 205 ARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQRLTELE 249 (261)
T ss_dssp GGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999764 334555555555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.2e-11 Score=107.20 Aligned_cols=169 Identities=11% Similarity=0.016 Sum_probs=104.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQ 141 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~ 141 (479)
..+..++.+|..++..|+|++|+.+|.+++++ +|....+|+.+|.+++..++.+... +.....
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~------- 70 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKS--------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALS------- 70 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHH-------
Confidence 34678899999999999999999999999997 6788899999999999875432110 000000
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCc-ChHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDE-SDLDLAWKMLDVAR 220 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~-~dle~Awe~Le~Ar 220 (479)
..+... .. . -..+...-.. ++++.|..+++.++
T Consensus 71 -----------~~~~~~------~~--------~---------------------~~l~~~~~~~~~~~~~A~~~~~~~~ 104 (225)
T 2vq2_A 71 -----------IKPDSA------EI--------N---------------------NNYGWFLCGRLNRPAESMAYFDKAL 104 (225)
T ss_dssp -----------HCTTCH------HH--------H---------------------HHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred -----------hCCCCh------HH--------H---------------------HHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 000000 00 0 0000001123 45556655555554
Q ss_pred HHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011692 221 AIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 221 ~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
. ....+....+|..+|.++...|+|++|+..|++++.+. +++ ..+++.||.+|...|++++|+.+|+
T Consensus 105 ~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~la~~~~~~~~~~~A~~~~~ 171 (225)
T 2vq2_A 105 A-----DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-----PQF---PPAFKELARTKMLAGQLGDADYYFK 171 (225)
T ss_dssp T-----STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTC---HHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred c-----CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---chHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 11234566777777777777777777777777776652 222 4667777777777777777777777
Q ss_pred HHHHHH
Q 011692 301 KAISVC 306 (479)
Q Consensus 301 kAL~I~ 306 (479)
+++.+.
T Consensus 172 ~~~~~~ 177 (225)
T 2vq2_A 172 KYQSRV 177 (225)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 776653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-12 Score=117.35 Aligned_cols=84 Identities=15% Similarity=0.129 Sum_probs=72.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|..+|+.++.+ .|..+.+|++||.++..+|+|++|+.+|++++.+... + +.+||+||.||
T Consensus 50 g~~~eA~~~~~~al~~-------~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-----~---~~~~~~lg~~~ 114 (151)
T 3gyz_A 50 GRIEEAEVFFRFLCIY-------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-----D---YTPVFHTGQCQ 114 (151)
T ss_dssp TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-----C---CHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-----C---cHHHHHHHHHH
Confidence 4567777777777655 3566889999999999999999999999999998643 3 37899999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
..+|++++|+.+|+++|.+
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999999976
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.33 E-value=4.8e-11 Score=97.78 Aligned_cols=131 Identities=27% Similarity=0.366 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCc
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~d 146 (479)
..++.+|..++..|+|++|..+|.+++++ +|....+|+.+|.+++..
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~------------------------- 48 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPRSAEAWYNLGNAYYKQ------------------------- 48 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH-------------------------
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHc--------CCcchhHHHHHHHHHHHh-------------------------
Confidence 35778999999999999999999999987 567788999999998765
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011692 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226 (479)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~ 226 (479)
++++.|..+++.++.+.
T Consensus 49 ------------------------------------------------------------~~~~~A~~~~~~~~~~~--- 65 (136)
T 2fo7_A 49 ------------------------------------------------------------GDYDEAIEYYQKALELD--- 65 (136)
T ss_dssp ------------------------------------------------------------TCHHHHHHHHHHHHHHC---
T ss_pred ------------------------------------------------------------cCHHHHHHHHHHHHHHC---
Confidence 34667777777776542
Q ss_pred cCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 227 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 227 ~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
+....++..||.++...|+|++|+..|++++.+.. .+ ..+++.+|.+|...|++++|+.+|++++.+
T Consensus 66 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 66 ----PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----RS---AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp ----TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----TC---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred ----CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----CC---hHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 23467899999999999999999999999998632 22 578999999999999999999999999865
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.9e-11 Score=107.37 Aligned_cols=99 Identities=11% Similarity=0.068 Sum_probs=87.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|..+++.|+.++.+.. ..+..+.+|.+||.++..+|+|++|+.+|++++.+.+.. +.+....+.++++||.+|
T Consensus 40 g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~lg~~~ 117 (203)
T 3gw4_A 40 DRFDEARASFQALQQQAQKSG-DHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASL-PEDPLAASANAYEVATVA 117 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CccHHHHHHHHHHHHHHH
Confidence 467889999999999998764 456789999999999999999999999999999999853 434557899999999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
...|++++|+.+|++++.+.+
T Consensus 118 ~~~g~~~~A~~~~~~al~~~~ 138 (203)
T 3gw4_A 118 LHFGDLAGARQEYEKSLVYAQ 138 (203)
T ss_dssp HHHTCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998854
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-11 Score=110.74 Aligned_cols=125 Identities=18% Similarity=0.050 Sum_probs=105.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC----CCChhHHHHHHHHHHHHHhhhhccCCcCCCCCC
Q 011692 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYG----ELALECVNAYYQYGRALLYKAQEEADPLVSVPK 134 (479)
Q Consensus 59 ~~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~G----e~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~ 134 (479)
|-+....|..++++|..++..|+|++|+.+|.+|+++.-.... ...|..+.+|++.|.+|..+
T Consensus 4 ~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~L------------- 70 (159)
T 2hr2_A 4 PLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL------------- 70 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT-------------
T ss_pred cHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHC-------------
Confidence 3455678999999999999999999999999999999644111 01233566999999999886
Q ss_pred CcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHH
Q 011692 135 KEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWK 214 (479)
Q Consensus 135 ~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe 214 (479)
++|+.|..
T Consensus 71 ------------------------------------------------------------------------gr~~eAl~ 78 (159)
T 2hr2_A 71 ------------------------------------------------------------------------RSFDEALH 78 (159)
T ss_dssp ------------------------------------------------------------------------TCHHHHHH
T ss_pred ------------------------------------------------------------------------CCHHHHHH
Confidence 45778999
Q ss_pred HHHHHHHHHHHhcCCcchHHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 011692 215 MLDVARAIAEKHWGDSMEKVDIL----SALAEVALEREDIETSLSDYQKALTILERMV 268 (479)
Q Consensus 215 ~Le~Ar~Iyek~~~~~~~~A~v~----~~LGev~le~g~yeeAl~dy~kAL~I~~~ll 268 (479)
.++.|+.+|.+.+...+..+.+| +++|.++..+|+|++|+.+|++||+|...--
T Consensus 79 ~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 79 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 99999999999888778888999 9999999999999999999999999987643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=7.4e-11 Score=102.44 Aligned_cols=165 Identities=14% Similarity=0.120 Sum_probs=109.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
+..+..+|..++..|+|++|+.+|.+++.+ +|....+|+.+|.+++..++.+... +.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--------- 70 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLA--------- 70 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------
Confidence 556777888888888888888888887764 5666778888888887764432210 000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
..+... .. .. ..+...-..++++.|+++++.++.+.
T Consensus 71 ---------~~~~~~------~~--------~~---------------------~~a~~~~~~~~~~~A~~~~~~~~~~~ 106 (186)
T 3as5_A 71 ---------DAPDNV------KV--------AT---------------------VLGLTYVQVQKYDLAVPLLIKVAEAN 106 (186)
T ss_dssp ---------HCTTCH------HH--------HH---------------------HHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ---------cCCCCH------HH--------HH---------------------HHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 000000 00 00 00000011245667777777666542
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
+....++..+|.++...|+|++|+..|++++.+.. ++ ..+++.||.+|...|++++|+.+|++++
T Consensus 107 -------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~~---~~~~~~la~~~~~~~~~~~A~~~~~~~~ 171 (186)
T 3as5_A 107 -------PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRP-----NE---GKVHRAIAFSYEQMGRHEEALPHFKKAN 171 (186)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCc-----cc---hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999998742 22 5889999999999999999999999998
Q ss_pred HHH
Q 011692 304 SVC 306 (479)
Q Consensus 304 ~I~ 306 (479)
.+.
T Consensus 172 ~~~ 174 (186)
T 3as5_A 172 ELD 174 (186)
T ss_dssp HHH
T ss_pred HcC
Confidence 763
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-11 Score=111.10 Aligned_cols=51 Identities=18% Similarity=0.182 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhh
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQ 123 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar 123 (479)
.+..++.+|..++..|+|++|+.+|.+++++ .|..+.+|+.+|.+++..++
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~ 86 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--------DPSSADAHAALAVVFQTEME 86 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CCChHHHHHHHHHHHHHcCC
Confidence 4788999999999999999999999999998 67788999999999988643
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.5e-11 Score=116.02 Aligned_cols=153 Identities=16% Similarity=0.047 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELA-LECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~-pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
.+..++.+|..++..|+|++|..+|.+++.+. .... ...+.+++.+|.+++..
T Consensus 13 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~~~~~l~~~~~~~---------------------- 66 (373)
T 1hz4_A 13 HAEFNALRAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCK---------------------- 66 (373)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC----CCCchhHHHHHHHHHHHHHHhc----------------------
Confidence 36677889999999999999999999999863 2222 23566888888888765
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|..+|+.|+.++
T Consensus 67 ---------------------------------------------------------------g~~~~A~~~~~~al~~~ 83 (373)
T 1hz4_A 67 ---------------------------------------------------------------GELTRSLALMQQTEQMA 83 (373)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------CcHHHHHHHHHHHHHHH
Confidence 46778999999999998
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.+.. .....+.++.+||.++...|+|++|+.+|+++|.+.+...++.++..+.+|++||.+|...|++++|+.+|++++
T Consensus 84 ~~~~-~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 162 (373)
T 1hz4_A 84 RQHD-VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI 162 (373)
T ss_dssp HHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhcC-cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 7753 344568899999999999999999999999999999998877788899999999999999999999999999999
Q ss_pred HHHH
Q 011692 304 SVCK 307 (479)
Q Consensus 304 ~I~k 307 (479)
.+..
T Consensus 163 ~~~~ 166 (373)
T 1hz4_A 163 EVLS 166 (373)
T ss_dssp HHTT
T ss_pred HHhh
Confidence 8754
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.8e-11 Score=116.41 Aligned_cols=85 Identities=14% Similarity=0.122 Sum_probs=67.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSME--KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~--~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
++++.|..+|+.++.+ .+. .+.+|..||.++...|+|++|+..|++++.+. |..+.+|++||.
T Consensus 195 ~~~~~A~~~~~~a~~~-------~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------~~~~~~~~~l~~ 259 (368)
T 1fch_A 195 SLFLEVKELFLAAVRL-------DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--------PNDYLLWNKLGA 259 (368)
T ss_dssp HHHHHHHHHHHHHHHH-------STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh-------CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------cCCHHHHHHHHH
Confidence 4455555555544433 233 57899999999999999999999999999873 223578999999
Q ss_pred HHHcCCChhHHHHHHHHHHHHH
Q 011692 285 CLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 285 ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
+|...|++++|+.+|++++.+.
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~ 281 (368)
T 1fch_A 260 TLANGNQSEEAVAAYRRALELQ 281 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999998764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-11 Score=104.70 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=73.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|+.|.+.|+.|+.+ .+..+.+|.++|.++..+|+|++|+.+|++||++... .+.+|++||.+|
T Consensus 27 g~~~~A~~~~~~al~~-------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--------~~~a~~~lg~~~ 91 (126)
T 4gco_A 27 GDYPTAMRHYNEAVKR-------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK--------FIKGYIRKAACL 91 (126)
T ss_dssp TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--------hhHHHHHHHHHH
Confidence 4688888888888765 3456889999999999999999999999999998432 358999999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
..+|+|++|+.+|+++|++
T Consensus 92 ~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHH
Confidence 9999999999999999986
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-11 Score=112.84 Aligned_cols=174 Identities=10% Similarity=-0.003 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
+..+..+|..++..|+|++|+.+|.+++++ +|..+.+|+.+|.+++..++.+..+ +-.+...
T Consensus 74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-------- 137 (272)
T 3u4t_A 74 SADFEYYGKILMKKGQDSLAIQQYQAAVDR--------DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-------- 137 (272)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--------
Confidence 445778888888888888888888888886 6777788888888888776543221 0000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++... .. .. ..+..--...+++.|...|+.++.+
T Consensus 138 ----------~~~~~------~~--------~~---------------------~l~~~~~~~~~~~~A~~~~~~a~~~- 171 (272)
T 3u4t_A 138 ----------TTTDP------KV--------FY---------------------ELGQAYYYNKEYVKADSSFVKVLEL- 171 (272)
T ss_dssp ----------SCCCH------HH--------HH---------------------HHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred ----------CCCcH------HH--------HH---------------------HHHHHHHHHHHHHHHHHHHHHHHHh-
Confidence 00000 00 00 0000000012566666666666544
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~---yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
.+....+|..+|.++..+++ |++|+.+|++++.+......+....++.+|+.||.+|...|++++|+.+|+
T Consensus 172 ------~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 245 (272)
T 3u4t_A 172 ------KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWK 245 (272)
T ss_dssp ------STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 23457899999999999999 999999999999998766543345578999999999999999999999999
Q ss_pred HHHHHHH
Q 011692 301 KAISVCK 307 (479)
Q Consensus 301 kAL~I~k 307 (479)
+++.+..
T Consensus 246 ~al~~~p 252 (272)
T 3u4t_A 246 NILALDP 252 (272)
T ss_dssp HHHHHCT
T ss_pred HHHhcCc
Confidence 9998743
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=2e-11 Score=128.05 Aligned_cols=175 Identities=17% Similarity=0.138 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCC
Q 011692 66 ADELMEKGTNALKESDY-GEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQG 142 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdy-eeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~ 142 (479)
+..++.+|..++..|+| ++|+.+|.+|+++ .|..+.+|+++|.+|+..++.+... +-.+...
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------- 166 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKL--------EPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH------- 166 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------
Confidence 67789999999999999 9999999999998 7899999999999999987653321 0000000
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
+ +.. .. ....+...... ......+..++++.|.+.|+.|+.+
T Consensus 167 -----------~---------p~~-~~-----~~~lg~~~~~~------------~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 167 -----------C---------KNK-VS-----LQNLSMVLRQL------------QTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp -----------C---------CCH-HH-----HHHHHHHHTTC------------CCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------C---------CCH-HH-----HHHHHHHHHHh------------ccCChhhhhhhHHHHHHHHHHHHHh
Confidence 0 000 00 00000000000 0000012236778888777777765
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALER--------EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~--------g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee 294 (479)
.+..+.+|.+||.+++.+ ++|++|+..|++++.+... ++..+.+|++||.+|..+|+|++
T Consensus 209 -------~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~lg~~~~~~g~~~~ 276 (474)
T 4abn_A 209 -------DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK-----ASSNPDLHLNRATLHKYEESYGE 276 (474)
T ss_dssp -------CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGG-----GGGCHHHHHHHHHHHHHTTCHHH
T ss_pred -------CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCC-----cccCHHHHHHHHHHHHHcCCHHH
Confidence 345678999999999999 9999999999999998431 23567999999999999999999
Q ss_pred HHHHHHHHHHH
Q 011692 295 AIPYCQKAISV 305 (479)
Q Consensus 295 Ai~~~ekAL~I 305 (479)
|+.+|++|+.+
T Consensus 277 A~~~~~~al~l 287 (474)
T 4abn_A 277 ALEGFSQAAAL 287 (474)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999975
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.29 E-value=5.3e-11 Score=119.30 Aligned_cols=145 Identities=15% Similarity=0.137 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC-------CCChhHHHHHHHHHHHHHhhhhccCCcCCCCCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYG-------ELALECVNAYYQYGRALLYKAQEEADPLVSVPK 134 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~G-------e~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~ 134 (479)
....+..+..+|..++.+|+|++|+.+|.+|+++.-.... ...+..+.+|+++|.+|+.+
T Consensus 143 ~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~------------- 209 (336)
T 1p5q_A 143 KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKL------------- 209 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHc-------------
Confidence 3456889999999999999999999999999998311100 01122379999999999875
Q ss_pred CcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHH
Q 011692 135 KEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWK 214 (479)
Q Consensus 135 ~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe 214 (479)
++++.|..
T Consensus 210 ------------------------------------------------------------------------g~~~~A~~ 217 (336)
T 1p5q_A 210 ------------------------------------------------------------------------QAFSAAIE 217 (336)
T ss_dssp ------------------------------------------------------------------------TCHHHHHH
T ss_pred ------------------------------------------------------------------------CCHHHHHH
Confidence 45777888
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH
Q 011692 215 MLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294 (479)
Q Consensus 215 ~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee 294 (479)
.|+.|+.+. +..+.+|++||.++..+|+|++|+.+|+++|++.. + ...++++||.+|..++++++
T Consensus 218 ~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-----~---~~~a~~~l~~~~~~~~~~~~ 282 (336)
T 1p5q_A 218 SCNKALELD-------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-----N---NKAAKTQLAVCQQRIRRQLA 282 (336)
T ss_dssp HHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----S---CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-----C---CHHHHHHHHHHHHHHHHHHH
Confidence 888887762 34678999999999999999999999999999843 2 25799999999999999998
Q ss_pred H-HHHHHHHHHHH
Q 011692 295 A-IPYCQKAISVC 306 (479)
Q Consensus 295 A-i~~~ekAL~I~ 306 (479)
| ...|++.+..+
T Consensus 283 a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 283 REKKLYANMFERL 295 (336)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 8 55777766543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.1e-12 Score=111.85 Aligned_cols=157 Identities=11% Similarity=0.058 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCCC
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGSD 144 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~~ 144 (479)
..++.+|..++..|+|++|+.+|.+++++ +|..+.+++.+|.+|+..++.+..+ |-.....
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--------- 69 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLE--------- 69 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---------
Confidence 35788999999999999999999999998 7999999999999999886653321 1000000
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHH---HHH----
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWK---MLD---- 217 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe---~Le---- 217 (479)
.....+...+. +..
T Consensus 70 -----------------------------------------------------------~p~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 70 -----------------------------------------------------------YQDNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp -----------------------------------------------------------GCCHHHHHHHHHHHHHHHHTS
T ss_pred -----------------------------------------------------------cCChHHHHHHHHHHHHhhccc
Confidence 00000000000 000
Q ss_pred -HHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 218 -VARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 218 -~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
.|+..|++.+...|....+|+.||.++...|+|++|+..|+++|.+.... .-..++++||.+|..+|++++|+
T Consensus 91 ~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~------~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 91 SPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA------QDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp CHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT------TTTHHHHHHHHHHHHHCSSCHHH
T ss_pred chHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc------ChHHHHHHHHHHHHHhCCCCcHH
Confidence 12333443333345668999999999999999999999999998874321 11368999999999999999999
Q ss_pred HHHHHHHHH
Q 011692 297 PYCQKAISV 305 (479)
Q Consensus 297 ~~~ekAL~I 305 (479)
.+|+++|..
T Consensus 165 ~~y~~al~~ 173 (176)
T 2r5s_A 165 SKYRRQLYS 173 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999865
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=4e-11 Score=117.06 Aligned_cols=162 Identities=12% Similarity=0.079 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCC--cCCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esd--vLG~~~~~~~e~~~~~ 143 (479)
...++.+|..++..|+|++|+.+|.+++++ +|.++.+++.+|.+|+..++.+.. .|...+..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-------- 180 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL--------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-------- 180 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--------
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--------
Confidence 567899999999999999999999999998 899999999999999998765332 11111000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHH-----HH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKML-----DV 218 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~L-----e~ 218 (479)
. . +.....+..+..++ +.
T Consensus 181 ---------------------------------~------p------------------~~~~~~~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 181 ---------------------------------D------Q------------------DTRYQGLVAQIELLXQAADTP 203 (287)
T ss_dssp ---------------------------------G------C------------------SHHHHHHHHHHHHHHHHTSCH
T ss_pred ---------------------------------h------c------------------chHHHHHHHHHHHHhhcccCc
Confidence 0 0 00000111111110 11
Q ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHH
Q 011692 219 ARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPY 298 (479)
Q Consensus 219 Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~ 298 (479)
|...|++.+...|...++|++||.++...|+|++|+..|+++|++.... .-+.++.+||.+|...|++++|+.+
T Consensus 204 a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~------~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 204 EIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA------ADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG------GGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc------ccchHHHHHHHHHHHcCCCCcHHHH
Confidence 3334444433356678899999999999999999999999999985432 1258899999999999999999999
Q ss_pred HHHHHHHH
Q 011692 299 CQKAISVC 306 (479)
Q Consensus 299 ~ekAL~I~ 306 (479)
|+++|..+
T Consensus 278 ~r~al~~~ 285 (287)
T 3qou_A 278 YRRQLYAL 285 (287)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99998754
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.2e-11 Score=114.21 Aligned_cols=172 Identities=13% Similarity=0.101 Sum_probs=122.8
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcC--CCCCCCcCCCCCC
Q 011692 66 ADELMEKGTNALKES-DYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPL--VSVPKKEGDSQQG 142 (479)
Q Consensus 66 A~~L~~~G~~~~~~g-dyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvL--G~~~~~~~e~~~~ 142 (479)
...++.+|..++..| +|++|+.+|.+++++ .|..+.+|+.+|.+++..++.+..+- -....
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-------- 153 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTL--------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQ-------- 153 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTT--------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------
Confidence 567889999999999 999999999999986 68888899999999998865532210 00000
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
..+... .. .. ..+...-..++++.|.++|+.++
T Consensus 154 ----------~~~~~~------~~--------~~---------------------~l~~~~~~~~~~~~A~~~~~~al-- 186 (330)
T 3hym_B 154 ----------LMKGCH------LP--------ML---------------------YIGLEYGLTNNSKLAERFFSQAL-- 186 (330)
T ss_dssp ----------HTTTCS------HH--------HH---------------------HHHHHHHHTTCHHHHHHHHHHHH--
T ss_pred ----------hccccH------HH--------HH---------------------HHHHHHHHHhhHHHHHHHHHHHH--
Confidence 000000 00 00 00000011244555555554444
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-hhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDS-RHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~-r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
...+....++..||.++...|+|++|+..|++++.+.+....... +..+.+|++||.+|...|++++|+.+|++
T Consensus 187 -----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 261 (330)
T 3hym_B 187 -----SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQ 261 (330)
T ss_dssp -----TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -----HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 334556789999999999999999999999999999877655433 45578999999999999999999999999
Q ss_pred HHHH
Q 011692 302 AISV 305 (479)
Q Consensus 302 AL~I 305 (479)
++.+
T Consensus 262 a~~~ 265 (330)
T 3hym_B 262 ALVL 265 (330)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 9976
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.8e-11 Score=112.04 Aligned_cols=53 Identities=25% Similarity=0.119 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhc
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~ 124 (479)
..+..++.+|..++..|+|++|+.+|.+++++ +|....+|+.+|.+++..++.
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHccCH
Confidence 35778899999999999999999999999998 788889999999999987543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.1e-10 Score=96.53 Aligned_cols=122 Identities=16% Similarity=0.092 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..++.+|..++..|+|++|+.+|.+++++ .|..+.+|+++|.+++.+
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~a~~~~~~----------------------- 51 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--------APEDARGYSNRAAALAKL----------------------- 51 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT-----------------------
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHh-----------------------
Confidence 4788999999999999999999999999998 788999999999999875
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++++.|...|+.++.+.
T Consensus 52 --------------------------------------------------------------~~~~~A~~~~~~al~~~- 68 (126)
T 3upv_A 52 --------------------------------------------------------------MSFPEAIADCNKAIEKD- 68 (126)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHHHC-
T ss_pred --------------------------------------------------------------cCHHHHHHHHHHHHHhC-
Confidence 35777888888887652
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
+....+|..||.++..+|+|++|+.+|++++.+..... ..|.-..++..|+.++..
T Consensus 69 ------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~--~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 69 ------PNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVN--NGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHHH
T ss_pred ------CCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccC--CchhHHHHHHHHHHHHHh
Confidence 34578999999999999999999999999999986654 233345666667666543
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.8e-11 Score=117.97 Aligned_cols=168 Identities=15% Similarity=0.135 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+|+..++.+..+--. .
T Consensus 67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~--~----------- 125 (388)
T 1w3b_A 67 AEAYSNLGNVYKERGQLQEAIEHYRHALRL--------KPDFIDGYINLAAALVAAGDMEGAVQAY--V----------- 125 (388)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHSCSSHHHHHH--H-----------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CcchHHHHHHHHHHHHHcCCHHHHHHHH--H-----------
Confidence 456778888888888888888888888876 6777888888888888775442210000 0
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.... .++... .. . -..+......++++.|.++|+.++.+
T Consensus 126 -~al~--~~p~~~------~~--------~---------------------~~l~~~~~~~g~~~~A~~~~~~al~~--- 164 (388)
T 1w3b_A 126 -SALQ--YNPDLY------CV--------R---------------------SDLGNLLKALGRLEEAKACYLKAIET--- 164 (388)
T ss_dssp -HHHH--HCTTCT------HH--------H---------------------HHHHHHHHTTSCHHHHHHHHHHHHHH---
T ss_pred -HHHH--hCCCcH------HH--------H---------------------HHHHHHHHHccCHHHHHHHHHHHHHh---
Confidence 0000 000000 00 0 00000012236677777777766643
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+..+.+|.+||.++...|+|++|+..|++++.+. |....+|++||.+|...+++++|+.+|++++.+
T Consensus 165 ----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 232 (388)
T 1w3b_A 165 ----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--------PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL 232 (388)
T ss_dssp ----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 34568899999999999999999999999999873 233689999999999999999999999999987
Q ss_pred HH
Q 011692 306 CK 307 (479)
Q Consensus 306 ~k 307 (479)
..
T Consensus 233 ~p 234 (388)
T 1w3b_A 233 SP 234 (388)
T ss_dssp CT
T ss_pred Cc
Confidence 54
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=5.9e-11 Score=103.10 Aligned_cols=84 Identities=15% Similarity=0.154 Sum_probs=70.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|..+|+.++.+ .+....++..+|.++...|+|++|+..|++++.+.. + ...+++.+|.+|
T Consensus 56 ~~~~~A~~~~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~~a~~~ 120 (186)
T 3as5_A 56 GAVDRGTELLERSLAD-------APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANP-----I---NFNVRFRLGVAL 120 (186)
T ss_dssp TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-----H---hHHHHHHHHHHH
Confidence 5677777777777654 234578999999999999999999999999998732 2 257899999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
...|++++|+.+|++++.+
T Consensus 121 ~~~~~~~~A~~~~~~~~~~ 139 (186)
T 3as5_A 121 DNLGRFDEAIDSFKIALGL 139 (186)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHhc
Confidence 9999999999999999875
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.8e-11 Score=114.67 Aligned_cols=168 Identities=12% Similarity=0.098 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCC--CCCCCcCCCCCCCC
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLV--SVPKKEGDSQQGSD 144 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG--~~~~~~~e~~~~~~ 144 (479)
..++.+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+++..++.+..+-- .....
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------- 66 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAK--------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSK--------- 66 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHT--------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---------
Confidence 46789999999999999999999999987 677778999999999988655332100 00000
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
+... ...... . -..+..--..++++.|.+.|+.++.+
T Consensus 67 ----------~~~~----------------~~~~~~-~--------------~~lg~~~~~~~~~~~A~~~~~~a~~~-- 103 (272)
T 3u4t_A 67 ----------VNAT----------------KAKSAD-F--------------EYYGKILMKKGQDSLAIQQYQAAVDR-- 103 (272)
T ss_dssp ----------SCTT----------------TCCHHH-H--------------HHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred ----------cCch----------------hHHHHH-H--------------HHHHHHHHHcccHHHHHHHHHHHHhc--
Confidence 0000 000000 0 00000011235666666666666543
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHHcCCChhHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRIC-LCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG-~ay~~~g~~eeAi~~~ekAL 303 (479)
.+..+.+|..||.++..+|+|++|+..|++++.+ ++....++++|| .+|. .+++++|+.+|++++
T Consensus 104 -----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~ 169 (272)
T 3u4t_A 104 -----DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--------TTTDPKVFYELGQAYYY-NKEYVKADSSFVKVL 169 (272)
T ss_dssp -----STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--------SCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred -----CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--------CCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999987 333468999999 6555 459999999999999
Q ss_pred HHHHH
Q 011692 304 SVCKS 308 (479)
Q Consensus 304 ~I~k~ 308 (479)
.+...
T Consensus 170 ~~~p~ 174 (272)
T 3u4t_A 170 ELKPN 174 (272)
T ss_dssp HHSTT
T ss_pred HhCcc
Confidence 98654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.26 E-value=8e-11 Score=112.10 Aligned_cols=144 Identities=13% Similarity=0.094 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
...+..+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+++..
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~------------------------ 219 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVEL--------RPDDAQLWNKLGATLANG------------------------ 219 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHc------------------------
Confidence 456777888888888888888888888877 577778888888888764
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|..+|+.++.+.
T Consensus 220 -------------------------------------------------------------~~~~~A~~~~~~a~~~~-- 236 (327)
T 3cv0_A 220 -------------------------------------------------------------NRPQEALDAYNRALDIN-- 236 (327)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHHHHC--
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHcC--
Confidence 35677888887776642
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR----HIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r----~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
+....+|..||.++...|+|++|+..|++++.+........+. ....++++||.+|...|++++|+.+|++
T Consensus 237 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 237 -----PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred -----CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3456799999999999999999999999999998664333322 2689999999999999999999999999
Q ss_pred HHHHHHHH
Q 011692 302 AISVCKSR 309 (479)
Q Consensus 302 AL~I~k~r 309 (479)
++.+++..
T Consensus 312 ~l~~~~~~ 319 (327)
T 3cv0_A 312 NVEPFAKE 319 (327)
T ss_dssp CSHHHHHH
T ss_pred HHHhcchh
Confidence 99987654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.9e-11 Score=115.39 Aligned_cols=172 Identities=13% Similarity=0.092 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
...++.+|..++..|+|++|+.+|.+++++ .|....+++.+|.+++..++.+... +-....
T Consensus 125 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--------- 187 (330)
T 3hym_B 125 GPAWIAYGHSFAVESEHDQAMAAYFTAAQL--------MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALS--------- 187 (330)
T ss_dssp THHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---------
Confidence 456889999999999999999999999998 5777889999999999876543210 000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
..+... .. . -..+...-..++++.|..+|+.++.++
T Consensus 188 ---------~~~~~~------~~--------~---------------------~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 188 ---------IAPEDP------FV--------M---------------------HEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp ---------TCTTCH------HH--------H---------------------HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------hCCCCh------HH--------H---------------------HHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 000000 00 0 000000122468889999999999888
Q ss_pred HHhcCC--cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 224 EKHWGD--SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 224 ek~~~~--~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
.+.... .+..+.+|..||.++...|+|++|+..|++++.+... .+.+|++||.+|...|++++|+.+|++
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~ 295 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ--------NASTYSAIGYIHSLMGNFENAVDYFHT 295 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------CSHHHHHHHHHHHHHTCHHHHHHHHHT
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc--------chHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 665432 2455789999999999999999999999999988432 358899999999999999999999999
Q ss_pred HHHHH
Q 011692 302 AISVC 306 (479)
Q Consensus 302 AL~I~ 306 (479)
++.+.
T Consensus 296 al~~~ 300 (330)
T 3hym_B 296 ALGLR 300 (330)
T ss_dssp TTTTC
T ss_pred HHccC
Confidence 98764
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-10 Score=104.74 Aligned_cols=165 Identities=13% Similarity=0.113 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
...+..+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+++..++.+... +-....
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--------- 119 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALEL--------DSSAATAYYGAGNVYVVKEMYKEAKDMFEKALR--------- 119 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCcchHHHHHHHHHHHHhccHHHHHHHHHHHHH---------
Confidence 678889999999999999999999999988 6778899999999999875542210 000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
..+... ..- -..+...-..++++.|..+|+.++.+.
T Consensus 120 ---------~~~~~~------~~~-----------------------------~~~a~~~~~~~~~~~A~~~~~~~~~~~ 155 (243)
T 2q7f_A 120 ---------AGMENG------DLF-----------------------------YMLGTVLVKLEQPKLALPYLQRAVELN 155 (243)
T ss_dssp ---------HTCCSH------HHH-----------------------------HHHHHHHHHTSCHHHHHHHHHHHHHHC
T ss_pred ---------hCCCCH------HHH-----------------------------HHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 000000 000 000000112356777777777666542
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
+....++..||.++...|+|++|+..|++++.+.. + .+.+++.||.+|...|++++|+.+|++++
T Consensus 156 -------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 156 -------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDP-----G---HADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp -------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred -------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-----c---cHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 23467899999999999999999999999988732 2 25789999999999999999999999998
Q ss_pred HHH
Q 011692 304 SVC 306 (479)
Q Consensus 304 ~I~ 306 (479)
.+.
T Consensus 221 ~~~ 223 (243)
T 2q7f_A 221 DIQ 223 (243)
T ss_dssp HHC
T ss_pred ccC
Confidence 764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=7.2e-11 Score=117.27 Aligned_cols=164 Identities=19% Similarity=0.192 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
...+..+|..+...|+|++|+.+|.+++.+ +|....+|+++|.+++..++.+... +-....
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--------- 265 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--------- 265 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---------
Confidence 667899999999999999999999999998 7888999999999999886543211 000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
.++... ..- -..+..-...++++.|+++|+.++.+
T Consensus 266 ---------~~p~~~------~~~-----------------------------~~l~~~~~~~g~~~~A~~~~~~al~~- 300 (388)
T 1w3b_A 266 ---------LQPHFP------DAY-----------------------------CNLANALKEKGSVAEAEDCYNTALRL- 300 (388)
T ss_dssp ---------TCSSCH------HHH-----------------------------HHHHHHHHHHSCHHHHHHHHHHHHHH-
T ss_pred ---------hCCCCH------HHH-----------------------------HHHHHHHHHcCCHHHHHHHHHHHHhh-
Confidence 000000 000 00000011235677777777777654
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.+..+.+|..||.++...|+|++|+..|++++.+. |..+.+|++||.+|...|++++|+.+|++++
T Consensus 301 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 366 (388)
T 1w3b_A 301 ------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp ------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred ------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 23457899999999999999999999999998752 3346899999999999999999999999998
Q ss_pred HH
Q 011692 304 SV 305 (479)
Q Consensus 304 ~I 305 (479)
.+
T Consensus 367 ~~ 368 (388)
T 1w3b_A 367 RI 368 (388)
T ss_dssp TT
T ss_pred hh
Confidence 65
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=5.5e-11 Score=105.21 Aligned_cols=86 Identities=10% Similarity=0.076 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|..+|+.+..+ .+..+.+|+.||.++..+|+|++|+..|++++.+.. ++ +.+|++||.+|
T Consensus 35 g~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-----~~---~~~~~~lg~~~ 99 (148)
T 2vgx_A 35 GXYEDAHXVFQALCVL-------DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-----XE---PRFPFHAAECL 99 (148)
T ss_dssp TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TC---THHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHc-------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CC---chHHHHHHHHH
Confidence 4577787777777654 345678999999999999999999999999999853 33 47899999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
..+|++++|+.+|++++.+..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHCc
Confidence 999999999999999998753
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-10 Score=106.62 Aligned_cols=134 Identities=16% Similarity=0.097 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+..+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+++..
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~------------------------ 118 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALAS--------DSRNARVLNNYGGFLYEQ------------------------ 118 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHH------------------------
Confidence 456788999999999999999999999998 677889999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|.++|+.++.
T Consensus 119 -------------------------------------------------------------g~~~~A~~~~~~~~~---- 133 (252)
T 2ho1_A 119 -------------------------------------------------------------KRYEEAYQRLLEASQ---- 133 (252)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHTT----
T ss_pred -------------------------------------------------------------hHHHHHHHHHHHHHh----
Confidence 345556666655543
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
....+....++..||.++...|+|++|+..|++++.+.. . ...+++.||.+|...|++++|+.+|++++.+
T Consensus 134 -~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-----~---~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 134 -DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-----N---QPSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp -CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-----C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-----c---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 113456778888889999899999999988888887632 2 2577888888888888888888888887753
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.2e-10 Score=102.65 Aligned_cols=112 Identities=16% Similarity=0.125 Sum_probs=92.8
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCC----------ChhHHHHHHHHHHHHHhhhhccCCcCC
Q 011692 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGEL----------ALECVNAYYQYGRALLYKAQEEADPLV 130 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~----------~pe~A~~y~~YG~ALl~~ar~esdvLG 130 (479)
..++.+..|..+|..++..|+|++|+.+|.+|+++........ .|..+.+|+++|.+|+.+
T Consensus 6 e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--------- 76 (162)
T 3rkv_A 6 DKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNI--------- 76 (162)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 4567799999999999999999999999999999976654321 567788999999999876
Q ss_pred CCCCCcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHH
Q 011692 131 SVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLD 210 (479)
Q Consensus 131 ~~~~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle 210 (479)
++++
T Consensus 77 ----------------------------------------------------------------------------~~~~ 80 (162)
T 3rkv_A 77 ----------------------------------------------------------------------------GDLH 80 (162)
T ss_dssp ----------------------------------------------------------------------------TCHH
T ss_pred ----------------------------------------------------------------------------CcHH
Confidence 3567
Q ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 211 LAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 211 ~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
.|...++.|+.+ .+..+.+|+.+|.++..+|+|++|+.+|+++|.+.
T Consensus 81 ~A~~~~~~al~~-------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 81 EAEETSSEVLKR-------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHHHHHHHHHHH-------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc-------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 788777777765 24567899999999999999999999999999984
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-11 Score=123.19 Aligned_cols=135 Identities=8% Similarity=-0.038 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 66 ADELMEKGTNALKESD-YGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 66 A~~L~~~G~~~~~~gd-yeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
+..++.+|..++.+|+ |++|+.+|.+|+++ +|....+|+++|.+|..++
T Consensus 131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--------~P~~~~a~~~~g~~~~~~g---------------------- 180 (382)
T 2h6f_A 131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLR---------------------- 180 (382)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcc----------------------
Confidence 5678899999999997 99999999999998 8999999999999999872
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
+++.|...|+.|+.+
T Consensus 181 ---------------------------------------------------------------~~~eAl~~~~kal~l-- 195 (382)
T 2h6f_A 181 ---------------------------------------------------------------DPSQELEFIADILNQ-- 195 (382)
T ss_dssp ---------------------------------------------------------------CCTTHHHHHHHHHHH--
T ss_pred ---------------------------------------------------------------CHHHHHHHHHHHHHh--
Confidence 122355666666554
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc-CCChhHH-----HHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI-GSKPQEA-----IPY 298 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~-~g~~eeA-----i~~ 298 (479)
.+....+|++||.++..+|+|++|+.+|+++|++... -+.+|+++|.+|.. .+.+++| +.+
T Consensus 196 -----dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~--------~~~a~~~lg~~l~~l~~~~~eA~~~~el~~ 262 (382)
T 2h6f_A 196 -----DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR--------NNSVWNQRYFVISNTTGYNDRAVLEREVQY 262 (382)
T ss_dssp -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred -----CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 3566889999999999999999999999999998543 36899999999999 5555888 599
Q ss_pred HHHHHHHHHH
Q 011692 299 CQKAISVCKS 308 (479)
Q Consensus 299 ~ekAL~I~k~ 308 (479)
|++||.+-..
T Consensus 263 ~~~Al~l~P~ 272 (382)
T 2h6f_A 263 TLEMIKLVPH 272 (382)
T ss_dssp HHHHHHHSTT
T ss_pred HHHHHHHCCC
Confidence 9999987543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.23 E-value=4.1e-10 Score=111.44 Aligned_cols=153 Identities=7% Similarity=0.007 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..++.+|..++..|+|++|..+|.+++.+... .|. ....+.+++++|.+++..
T Consensus 51 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~-~~~~~~~~~~la~~~~~~---------------------- 106 (373)
T 1hz4_A 51 SRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ-HDV-WHYALWSLIQQSEILFAQ---------------------- 106 (373)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTC-HHHHHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHh-cCc-HHHHHHHHHHHHHHHHHC----------------------
Confidence 34667889999999999999999999999998665 332 234567788888888764
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|...++.++.++
T Consensus 107 ---------------------------------------------------------------G~~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 107 ---------------------------------------------------------------GFLQTAWETQEKAFQLI 123 (373)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------CCHHHHHHHHHHHHHHH
Confidence 46888999999999999
Q ss_pred HHhcCC-cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 224 EKHWGD-SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 224 ek~~~~-~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
.+.... .+..+.+|.+||.++...|+|++|+.+|++++.+.+... ++..+.+|++||.+|...|++++|+.+|+++
T Consensus 124 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 124 NEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ---PQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC---GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC---cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 876543 356889999999999999999999999999999987642 2335689999999999999999999999999
Q ss_pred HHHH
Q 011692 303 ISVC 306 (479)
Q Consensus 303 L~I~ 306 (479)
+.+.
T Consensus 201 ~~~~ 204 (373)
T 1hz4_A 201 ENLL 204 (373)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-10 Score=103.33 Aligned_cols=166 Identities=19% Similarity=0.168 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcC--CCCCCCcCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPL--VSVPKKEGDSQQG 142 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvL--G~~~~~~~e~~~~ 142 (479)
.+..++.+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+++..++.+...- -....
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-------- 85 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--------NKEDAIPYINFANLLSSVNELERALAFYDKALE-------- 85 (243)
T ss_dssp --------------------CCTTHHHHHTT--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Confidence 4778999999999999999999999999985 68889999999999998755422110 00000
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
..+... .. .. ..+...-..++++.|..+|+.++.+
T Consensus 86 ----------~~~~~~------~~--------~~---------------------~la~~~~~~~~~~~A~~~~~~~~~~ 120 (243)
T 2q7f_A 86 ----------LDSSAA------TA--------YY---------------------GAGNVYVVKEMYKEAKDMFEKALRA 120 (243)
T ss_dssp ----------HCTTCH------HH--------HH---------------------HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----------cCCcch------HH--------HH---------------------HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 000000 00 00 0000001235667777776666654
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
. +....++..+|.++...|+|++|+..|++++.+... ...+++.+|.+|...|++++|+.+|+++
T Consensus 121 ~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 185 (243)
T 2q7f_A 121 G-------MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN--------DTEARFQFGMCLANEGMLDEALSQFAAV 185 (243)
T ss_dssp T-------CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred C-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 234678999999999999999999999999887332 2468899999999999999999999998
Q ss_pred HHHH
Q 011692 303 ISVC 306 (479)
Q Consensus 303 L~I~ 306 (479)
+.+.
T Consensus 186 ~~~~ 189 (243)
T 2q7f_A 186 TEQD 189 (243)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8753
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.1e-10 Score=101.30 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..|+.+|..++..|+|++|+.+|.+++++ .|..+.+|+++|.+|+.+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~---------------------- 58 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSI--------APANPIYLSNRAAAYSAS---------------------- 58 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHT----------------------
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCcCHHHHHHHHHHHHHc----------------------
Confidence 45889999999999999999999999999998 788999999999999875
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|...|+.++.+.
T Consensus 59 ---------------------------------------------------------------g~~~~A~~~~~~al~~~ 75 (164)
T 3sz7_A 59 ---------------------------------------------------------------GQHEKAAEDAELATVVD 75 (164)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHHC
T ss_pred ---------------------------------------------------------------cCHHHHHHHHHHHHHhC
Confidence 45777888888887763
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 266 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ 266 (479)
+....+|++||.++..+|+|++|+.+|+++|.+...
T Consensus 76 -------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 76 -------PKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred -------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 345789999999999999999999999999998743
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.3e-10 Score=101.10 Aligned_cols=167 Identities=13% Similarity=0.019 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh-hhccCCc--CCCCCCCcCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK-AQEEADP--LVSVPKKEGDSQQG 142 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~-ar~esdv--LG~~~~~~~e~~~~ 142 (479)
...+..+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+++.. ++.+... +-....
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-------- 105 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSI--------KPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-------- 105 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT--------
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc--------
Confidence 456788999999999999999999999997 677889999999999987 6543221 000000
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
.+.. ...... - -..+......++++.|..+|+.++.+
T Consensus 106 -----------~~~~-----------------~~~~~~---~------------~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 106 -----------DPTY-----------------PTPYIA---N------------LNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp -----------STTC-----------------SCHHHH---H------------HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----------CcCC-----------------cchHHH---H------------HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0000 000000 0 00000011235667777666666543
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
.+....++..||.++...|+|++|+..|++++.+.. .++ ...++.++.++...+++++|..+++.+
T Consensus 143 -------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~a~~~~~~~ 208 (225)
T 2vq2_A 143 -------QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVE----VLQ---ADDLLLGWKIAKALGNAQAAYEYEAQL 208 (225)
T ss_dssp -------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC----SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCC---HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 234578999999999999999999999999998753 123 466889999999999999999988887
Q ss_pred HHH
Q 011692 303 ISV 305 (479)
Q Consensus 303 L~I 305 (479)
+.+
T Consensus 209 ~~~ 211 (225)
T 2vq2_A 209 QAN 211 (225)
T ss_dssp HHH
T ss_pred HHh
Confidence 654
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-10 Score=121.26 Aligned_cols=133 Identities=14% Similarity=0.042 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+..+|..++.+|+|++|+.+|.+|+++ +|..+.+|+++|.+|+..
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~------------------------ 70 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLAL--------HPGHPEAVARLGRVRWTQ------------------------ 70 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------STTCHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHC------------------------
Confidence 567899999999999999999999999997 788999999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|.+.|+.|+.+.
T Consensus 71 -------------------------------------------------------------g~~~~A~~~~~~al~~~-- 87 (568)
T 2vsy_A 71 -------------------------------------------------------------QRHAEAAVLLQQASDAA-- 87 (568)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHHHHC--
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHhcC--
Confidence 35777888888887652
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC---CChhHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG---SKPQEAIPYCQKA 302 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~---g~~eeAi~~~ekA 302 (479)
+....+|.+||.++..+|+|++|+..|++++++.. ....+|++||.+|..+ +++++|+.+|+++
T Consensus 88 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 88 -----PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP--------EEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 34578999999999999999999999999999843 2258999999999999 9999999999999
Q ss_pred HHHH
Q 011692 303 ISVC 306 (479)
Q Consensus 303 L~I~ 306 (479)
+.+.
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 9875
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.5e-10 Score=104.86 Aligned_cols=98 Identities=19% Similarity=0.124 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcC-----CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH--
Q 011692 207 SDLDLAWKMLDVARAIAEKHWG-----DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELN-- 279 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~-----~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~-- 279 (479)
++|+.|.+.|+.|+.+--..+. ..+..+.+|.++|.++..+|+|++|+.+|.+||+|+.... +-+|.-+.+|
T Consensus 25 g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~-e~~pd~~~A~~~ 103 (159)
T 2hr2_A 25 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG-ELNQDEGKLWIS 103 (159)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC-CTTSTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc-cCCCchHHHHHH
Confidence 4678888888888887644221 1123466999999999999999999999999999955443 2344557788
Q ss_pred --HHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 280 --FRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 280 --~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
|++|.+|..+|+|++|+.+|++||++
T Consensus 104 ~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 104 AVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999987
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.9e-10 Score=93.75 Aligned_cols=99 Identities=17% Similarity=0.162 Sum_probs=87.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|..+++.++.++.+.. .....+.++..||.++..+|+|++|+.+|++++.+.+.. .+.+..+.++++||.+|
T Consensus 23 ~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~l~~~~ 99 (164)
T 3ro3_A 23 GNFRDAVIAHEQRLLIAKEFG-DKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL--KDRAVEAQSCYSLGNTY 99 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHH
Confidence 467889999999999988764 345678999999999999999999999999999999876 35667899999999999
Q ss_pred HcCCChhHHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
...+++++|+.+|++++.+.+.
T Consensus 100 ~~~~~~~~A~~~~~~a~~~~~~ 121 (164)
T 3ro3_A 100 TLLQDYEKAIDYHLKHLAIAQE 121 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999988543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=7e-10 Score=106.44 Aligned_cols=136 Identities=19% Similarity=0.229 Sum_probs=112.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+++..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~------------------------ 50 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAM------------------------ 50 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CcccHHHHHHHHHHHHHc------------------------
Confidence 578899999999999999999999999997 788889999999999876
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|...|+.++.+
T Consensus 51 -------------------------------------------------------------~~~~~A~~~~~~~~~~--- 66 (359)
T 3ieg_A 51 -------------------------------------------------------------GKSKAALPDLTKVIAL--- 66 (359)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHHHH---
T ss_pred -------------------------------------------------------------cCHHHHHHHHHHHHHh---
Confidence 3567788888877765
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH------------HHHHHHHcCCChh
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNF------------RICLCLEIGSKPQ 293 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~------------~LG~ay~~~g~~e 293 (479)
.+....+|..||.++...|+|++|+..|++++.+.. .......+++ .+|.+|...|+++
T Consensus 67 ----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 67 ----KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-----SEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137 (359)
T ss_dssp ----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ----CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-----cccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHH
Confidence 234568999999999999999999999999987633 0002234444 4489999999999
Q ss_pred HHHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISVC 306 (479)
Q Consensus 294 eAi~~~ekAL~I~ 306 (479)
+|+.+|++++.+.
T Consensus 138 ~A~~~~~~~~~~~ 150 (359)
T 3ieg_A 138 AAITFLDKILEVC 150 (359)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=9.1e-10 Score=90.21 Aligned_cols=124 Identities=13% Similarity=0.099 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
....+..++.+|..++..|+|++|+.+|.+++.+ +|..+.+|+.+|.+++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~-------------------- 59 (131)
T 2vyi_A 8 DSAEAERLKTEGNEQMKVENFEAAVHFYGKAIEL--------NPANAVYFCNRAAAYSKL-------------------- 59 (131)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT--------------------
T ss_pred chhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHh--------------------
Confidence 3456889999999999999999999999999997 677889999999999865
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
++++.|.++++.++.
T Consensus 60 -----------------------------------------------------------------~~~~~A~~~~~~~~~ 74 (131)
T 2vyi_A 60 -----------------------------------------------------------------GNYAGAVQDCERAIC 74 (131)
T ss_dssp -----------------------------------------------------------------TCHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------hchHHHHHHHHHHHh
Confidence 356678888877776
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChh
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 293 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~e 293 (479)
+. +....+|..+|.++..+|+|++|+..|++++.+.. ++ ..+++.||.+|...++++
T Consensus 75 ~~-------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-----~~---~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 75 ID-------PAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP-----DN---ETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-----TC---HHHHHHHHHHHHHHTTCC
T ss_pred cC-------ccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc-----cc---hHHHHHHHHHHHHHhcCC
Confidence 42 33477999999999999999999999999998832 22 478999999999888763
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.18 E-value=5.3e-10 Score=114.73 Aligned_cols=56 Identities=14% Similarity=0.263 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhc
Q 011692 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQE 124 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~ 124 (479)
.....+..|+.+|..++..|+|++|+.+|.+++++ .|..+.+|+.+|.+++..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~ 75 (537)
T 3fp2_A 20 QRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--------DPNEPVFYSNISACYISTGDL 75 (537)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCH
T ss_pred hhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCH
Confidence 34457899999999999999999999999999998 788999999999999987543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.2e-10 Score=118.34 Aligned_cols=143 Identities=11% Similarity=-0.003 Sum_probs=118.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCCCC
Q 011692 78 KESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGES 157 (479)
Q Consensus 78 ~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~e~ 157 (479)
..++++.++..+.+.+....+.. .++..+.+|+++|.+++.+
T Consensus 23 ~l~~~~~~l~~~e~~~~~~~~~~--~~~~~a~~yn~Lg~~~~~~------------------------------------ 64 (472)
T 4g1t_A 23 NLMEGENSLDDFEDKVFYRTEFQ--NREFKATMCNLLAYLKHLK------------------------------------ 64 (472)
T ss_dssp CTTTTCCCHHHHHHHHHHHTTSC--C---CCHHHHHHHHHHHHT------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHhC--CChhHHHHHHHHHHHHHHC------------------------------------
Confidence 45677788888888777655433 3556688999999999875
Q ss_pred CcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC--CcchHHH
Q 011692 158 STASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG--DSMEKVD 235 (479)
Q Consensus 158 a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~--~~~~~A~ 235 (479)
++++.|.++|+.|+.|+.+... .++..+.
T Consensus 65 -------------------------------------------------G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~ 95 (472)
T 4g1t_A 65 -------------------------------------------------GQNEAALECLRKAEELIQQEHADQAEIRSLV 95 (472)
T ss_dssp -------------------------------------------------TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHH
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHHHHhcCccccchHHHH
Confidence 4678899999999999877644 3567899
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC--CChhHHHHHHHHHHHHHH
Q 011692 236 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG--SKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 236 v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~--g~~eeAi~~~ekAL~I~k 307 (479)
+|.+||.+|..+|+|++|+.+|++++.|.+.+.++.++..+.+|+++|.++... ++|++|+.+|++||.+..
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p 169 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP 169 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999988888999999999988754 479999999999998743
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=8.5e-10 Score=104.98 Aligned_cols=87 Identities=15% Similarity=0.243 Sum_probs=68.7
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 285 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 285 (479)
.++++.|..+|+.++.+. +....++..||.++...|+|++|+..|++++.+.. ....+++++|.+
T Consensus 151 ~~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~ 215 (327)
T 3cv0_A 151 PNEYRECRTLLHAALEMN-------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRP--------DDAQLWNKLGAT 215 (327)
T ss_dssp HHHHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhC-------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------CcHHHHHHHHHH
Confidence 456777777776665442 33568899999999999999999999999988732 225789999999
Q ss_pred HHcCCChhHHHHHHHHHHHHHH
Q 011692 286 LEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 286 y~~~g~~eeAi~~~ekAL~I~k 307 (479)
|...|++++|+.+|++++.+..
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~~ 237 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDINP 237 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHcCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999987643
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.17 E-value=2.9e-10 Score=103.52 Aligned_cols=137 Identities=16% Similarity=0.143 Sum_probs=91.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC---------hhHHHHHHHHHHHHHhhhhccCCcC
Q 011692 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELA---------LECVNAYYQYGRALLYKAQEEADPL 129 (479)
Q Consensus 59 ~~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~---------pe~A~~y~~YG~ALl~~ar~esdvL 129 (479)
.......+..++.+|..++..|+|++|+.+|.+|+++.-.. .+.. .-...+|+++|.+++.+
T Consensus 31 ~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~~~la~~~~~~-------- 101 (198)
T 2fbn_A 31 DEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHT-EEWDDQILLDKKKNIEISCNLNLATCYNKN-------- 101 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC-TTCCCHHHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-cccchhhHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 44466779999999999999999999999999999873110 0000 00136777777777654
Q ss_pred CCCCCCcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChH
Q 011692 130 VSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDL 209 (479)
Q Consensus 130 G~~~~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dl 209 (479)
+++
T Consensus 102 -----------------------------------------------------------------------------~~~ 104 (198)
T 2fbn_A 102 -----------------------------------------------------------------------------KDY 104 (198)
T ss_dssp -----------------------------------------------------------------------------TCH
T ss_pred -----------------------------------------------------------------------------cCH
Confidence 345
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC
Q 011692 210 DLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 289 (479)
Q Consensus 210 e~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 289 (479)
+.|+..++.++.+. +....+|+.+|.++..+|+|++|+.+|++++.+.. + ...++.+|+.++...
T Consensus 105 ~~A~~~~~~al~~~-------p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~---~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 105 PKAIDHASKVLKID-------KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP-----N---NLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-----T---CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-------cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-----C---cHHHHHHHHHHHHHH
Confidence 56666666666541 23456777777777777777777777777777632 2 246677777777766
Q ss_pred CChhHHH
Q 011692 290 SKPQEAI 296 (479)
Q Consensus 290 g~~eeAi 296 (479)
+++.++.
T Consensus 170 ~~~~~~~ 176 (198)
T 2fbn_A 170 KEARKKD 176 (198)
T ss_dssp HHHHC--
T ss_pred HHHHHHH
Confidence 6666555
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-11 Score=132.74 Aligned_cols=133 Identities=14% Similarity=0.014 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCc
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~d 146 (479)
..++.+|..++.+|+|++|+.+|.+++++ +|..+.+|+++|.+|+..
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~------------------------- 480 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAER--------VGWRWRLVWYRAVAELLT------------------------- 480 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--------HCCCHHHHHHHHHHHHHH-------------------------
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhcc--------CcchHHHHHHHHHHHHHc-------------------------
Confidence 46888999999999999999999999998 688999999999999876
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011692 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226 (479)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~ 226 (479)
++++.|.+.|+.|+.+
T Consensus 481 ------------------------------------------------------------g~~~~A~~~~~~al~l---- 496 (681)
T 2pzi_A 481 ------------------------------------------------------------GDYDSATKHFTEVLDT---- 496 (681)
T ss_dssp ------------------------------------------------------------TCHHHHHHHHHHHHHH----
T ss_pred ------------------------------------------------------------CCHHHHHHHHHHHHHh----
Confidence 3577788888877765
Q ss_pred cCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 227 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 227 ~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
.+..+.+|++||.++..+|+|++ +.+|+++|++... .+.+|++||.+|..+|++++|+.+|++|+++-
T Consensus 497 ---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 564 (681)
T 2pzi_A 497 ---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG--------VISAAFGLARARSAEGDRVGAVRTLDEVPPTS 564 (681)
T ss_dssp ---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTS
T ss_pred ---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc--------hHHHHHHHHHHHHHcCCHHHHHHHHHhhcccC
Confidence 24457899999999999999999 9999999998432 35799999999999999999999999998764
Q ss_pred HH
Q 011692 307 KS 308 (479)
Q Consensus 307 k~ 308 (479)
..
T Consensus 565 P~ 566 (681)
T 2pzi_A 565 RH 566 (681)
T ss_dssp TT
T ss_pred cc
Confidence 43
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-09 Score=102.33 Aligned_cols=92 Identities=10% Similarity=-0.077 Sum_probs=69.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCC----------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGD----------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIA 276 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~----------~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iA 276 (479)
++++.|...|+.++..|-..... ...++..+..+|.++...|+|++|+..|++++++. |+++...
T Consensus 110 ~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~ 184 (225)
T 2yhc_A 110 QQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-----PDTQATR 184 (225)
T ss_dssp HHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-----TTSHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-----cCCCccH
Confidence 56777766666655443211100 01234556789999999999999999999999875 4567788
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
+++++||.+|..+|++++|+.+|++++
T Consensus 185 ~a~~~l~~~~~~~g~~~~A~~~~~~l~ 211 (225)
T 2yhc_A 185 DALPLMENAYRQMQMNAQAEKVAKIIA 211 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 999999999999999999999997655
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.16 E-value=8e-10 Score=115.41 Aligned_cols=172 Identities=12% Similarity=0.078 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
...+..+|..+...|+|++|+.+|.+++++ .|....+|+.+|.+|...++.+... |.....
T Consensus 407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------- 469 (597)
T 2xpi_A 407 GPAWIGFAHSFAIEGEHDQAISAYTTAARL--------FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYA--------- 469 (597)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--------TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------
Confidence 567889999999999999999999999976 5677889999999999886543220 000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
..+... ..- -......-..++++.|+++|+.++.++
T Consensus 470 ---------~~~~~~------~~~-----------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~ 505 (597)
T 2xpi_A 470 ---------LFQYDP------LLL-----------------------------NELGVVAFNKSDMQTAINHFQNALLLV 505 (597)
T ss_dssp ---------HCCCCH------HHH-----------------------------HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------hCCCCh------HHH-----------------------------HHHHHHHHHhCCHHHHHHHHHHHHHhh
Confidence 000000 000 000001122368899999999999887
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.+........+.+|..||.++...|+|++|+..|++++.+. +++ +.+|+.||.+|...|++++|+.+|++++
T Consensus 506 ~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~l 577 (597)
T 2xpi_A 506 KKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-----TND---ANVHTAIALVYLHKKIPGLAITHLHESL 577 (597)
T ss_dssp HHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----SCC---HHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCC---hHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 76433333358999999999999999999999999999884 233 5899999999999999999999999999
Q ss_pred HHH
Q 011692 304 SVC 306 (479)
Q Consensus 304 ~I~ 306 (479)
++.
T Consensus 578 ~~~ 580 (597)
T 2xpi_A 578 AIS 580 (597)
T ss_dssp HHC
T ss_pred hcC
Confidence 864
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.9e-10 Score=98.60 Aligned_cols=86 Identities=13% Similarity=0.053 Sum_probs=72.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|..+|+.++.+ .+....+|..||.++..+|+|++|+..|++++.+.. ++ ..+|++||.+|
T Consensus 32 g~~~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-----~~---~~~~~~lg~~~ 96 (142)
T 2xcb_A 32 GKWDDAQKIFQALCML-------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-----NE---PRFPFHAAECH 96 (142)
T ss_dssp TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC---THHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh-------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-----CC---cHHHHHHHHHH
Confidence 4577777777776643 345678999999999999999999999999999843 33 37899999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
..+|++++|+.+|++++.+..
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCC
Confidence 999999999999999999865
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3.1e-10 Score=100.19 Aligned_cols=119 Identities=10% Similarity=0.042 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
....++.+|..++.+|+|++|+.+|.+|+++ +|..+.+|+++|.+++..
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~----------------------- 78 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINV--------QERDPKAHRFLGLLYELE----------------------- 78 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT-----------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc-----------------------
Confidence 4556789999999999999999999999999 899999999999999875
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++++.|...|+.|+.+
T Consensus 79 --------------------------------------------------------------~~~~~A~~~~~~al~~-- 94 (150)
T 4ga2_A 79 --------------------------------------------------------------ENTDKAVECYRRSVEL-- 94 (150)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHHH--
T ss_pred --------------------------------------------------------------CchHHHHHHHHHHHHh--
Confidence 3567788888777765
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCC
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDY-QKALTILERMVEPDSRHIAELNFRICLCLEIGSK 291 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy-~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~ 291 (479)
.+...++|++||.++...++|++|+..| ++|+++.+ ++ +.+|..++.++...|+
T Consensus 95 -----~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-----~~---~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 95 -----NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-----GS---PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp -----CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-----TC---HHHHHHHHHHHHTCCC
T ss_pred -----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-----CC---HHHHHHHHHHHHHhCc
Confidence 3456889999999999999999888765 89998853 44 3678888888887774
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=8e-10 Score=104.74 Aligned_cols=162 Identities=13% Similarity=0.150 Sum_probs=100.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++..|+|++|+.+|.+|++ +....+++++|.+++..- .+.++.
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~----------~~~~~a~~~lg~~~~~g~----~~~~~~------------- 58 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD----------LKENSGCFNLGVLYYQGQ----GVEKNL------------- 58 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------TTCHHHHHHHHHHHHHTS----SSCCCH-------------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHcCC----CcCCCH-------------
Confidence 56788999999999999999999999998 334578999999998720 011110
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCcccc----ccccCcChHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVA----EADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~----~~~ed~~dle~Awe~Le~Ar~ 221 (479)
++...-. .++...+...... ..+ .+....++++.|+.+|+.|..
T Consensus 59 ~~A~~~~--------------~~a~~~~~~~a~~------------------~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 59 KKAASFY--------------AKACDLNYSNGCH------------------LLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp HHHHHHH--------------HHHHHTTCHHHHH------------------HHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHH--------------HHHHHCCCHHHHH------------------HHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 0000000 0000000000000 000 000113567777777766654
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc----CCChh
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALE----REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI----GSKPQ 293 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le----~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~----~g~~e 293 (479)
. ....++..||.++.. .++|++|+..|++++++. -+.++++||.+|.. .++++
T Consensus 107 ~---------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~----------~~~a~~~lg~~~~~~~~~~~~~~ 167 (273)
T 1ouv_A 107 L---------KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN----------DGDGCTILGSLYDAGRGTPKDLK 167 (273)
T ss_dssp T---------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT----------CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred c---------CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC----------cHHHHHHHHHHHHcCCCCCCCHH
Confidence 2 246678888888888 888888888888887642 14678888888887 78888
Q ss_pred HHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISV 305 (479)
Q Consensus 294 eAi~~~ekAL~I 305 (479)
+|+.+|+++++.
T Consensus 168 ~A~~~~~~a~~~ 179 (273)
T 1ouv_A 168 KALASYDKACDL 179 (273)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
Confidence 888888888765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.7e-10 Score=90.89 Aligned_cols=122 Identities=15% Similarity=0.177 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..++.+|..++..|+|++|+.+|.+++.+ .|....+|+.+|.+++..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~----------------------- 51 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEK----------------------- 51 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHh-----------------------
Confidence 4678999999999999999999999999997 577889999999999875
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++++.|..+|+.+..+..
T Consensus 52 --------------------------------------------------------------~~~~~A~~~~~~~~~~~~ 69 (131)
T 1elr_A 52 --------------------------------------------------------------GDYNKCRELCEKAIEVGR 69 (131)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------ccHHHHHHHHHHHHhhcc
Confidence 457788999999998887
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI 288 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~ 288 (479)
...........+|..||.++...|+|++|+..|++++.+. + + ...+..|+.++..
T Consensus 70 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~-~---~~~~~~l~~~~~~ 124 (131)
T 1elr_A 70 ENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH-----R-T---PDVLKKCQQAEKI 124 (131)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----C-C---HHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----C-C---HHHHHHHHHHHHH
Confidence 6544445568999999999999999999999999999862 2 2 3555666666543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-09 Score=96.20 Aligned_cols=85 Identities=18% Similarity=0.022 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|+.|.++|+.++.+. +..+.+|.+||.+++.+|+|++|+.+|+++|.+... .+.+|++||.+|
T Consensus 25 g~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--------~~~~~~~lg~~~ 89 (164)
T 3sz7_A 25 KEYSKAIDLYTQALSIA-------PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--------YSKAWSRLGLAR 89 (164)
T ss_dssp TCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-------CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHH
Confidence 46777888888877653 345789999999999999999999999999998432 368999999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
..+|+|++|+.+|+++|.+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999874
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.8e-10 Score=92.37 Aligned_cols=119 Identities=17% Similarity=0.169 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
....++.+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+++..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~la~~~~~~----------------------- 63 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--------NPKDAKLYSNRAACYTKL----------------------- 63 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHTTT-----------------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHh-----------------------
Confidence 3678899999999999999999999999986 677889999999998654
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++++.|+.+|+.++.+.
T Consensus 64 --------------------------------------------------------------~~~~~A~~~~~~a~~~~- 80 (133)
T 2lni_A 64 --------------------------------------------------------------LEFQLALKDCEECIQLE- 80 (133)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHHHC-
T ss_pred --------------------------------------------------------------ccHHHHHHHHHHHHHhC-
Confidence 45777888888887652
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCC
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK 291 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~ 291 (479)
+....+|..||.++...|+|++|+..|++++.+... -..+++.|+.+|..+++
T Consensus 81 ------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~--------~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 81 ------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSS--------CKEAADGYQRCMMAQYN 133 (133)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG--------GTHHHHHHHHHHHHHTC
T ss_pred ------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC--------chHHHHHHHHHHHHhcC
Confidence 345789999999999999999999999999988443 24788999999876653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.13 E-value=5.9e-10 Score=98.18 Aligned_cols=91 Identities=12% Similarity=0.017 Sum_probs=77.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcC-----C------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWG-----D------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHI 275 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~-----~------~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~i 275 (479)
++|+.|...|..|+.++..... . .+..+.+|.+||.+++.+|+|++|+.+|+++|.+. |..
T Consensus 25 ~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~--------p~~ 96 (162)
T 3rkv_A 25 KDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE--------ETN 96 (162)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--------TTC
T ss_pred CCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC--------Ccc
Confidence 5688888899988888655321 0 34568899999999999999999999999999983 333
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
+.+||++|.+|..+|+|++|+.+|+++|.+
T Consensus 97 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 97 EKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 689999999999999999999999999976
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.13 E-value=1e-09 Score=105.22 Aligned_cols=88 Identities=10% Similarity=-0.095 Sum_probs=72.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|...|+.++.+. +........+|..||.++...|+|++|+..|++++.+. |....+|+++|.+|
T Consensus 248 ~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 248 GRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME--------PDNVNALKDRAEAY 316 (359)
T ss_dssp TCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHH
Confidence 57888888888777654 22233356789999999999999999999999999972 22357999999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
...|++++|+.+|++++.+
T Consensus 317 ~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 9999999999999999865
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.2e-10 Score=104.89 Aligned_cols=127 Identities=11% Similarity=-0.003 Sum_probs=104.3
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCC
Q 011692 76 ALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNG 155 (479)
Q Consensus 76 ~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~ 155 (479)
....++|++|+.+|.+++++ .....|..+.+|+.+|.+++..
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~---------------------------------- 56 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILAS----RALTDDERAQLLYERGVLYDSL---------------------------------- 56 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTS----SCCCHHHHHHHHHHHHHHHHHT----------------------------------
T ss_pred cCccchHHHHHHHHHHHHhc----ccccCchhHHHHHHHHHHHHHc----------------------------------
Confidence 34568999999999999986 2234578999999999999875
Q ss_pred CCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcchHHH
Q 011692 156 ESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVD 235 (479)
Q Consensus 156 e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~ 235 (479)
++++.|...|+.++.+ .+....
T Consensus 57 ---------------------------------------------------~~~~~A~~~~~~al~~-------~~~~~~ 78 (275)
T 1xnf_A 57 ---------------------------------------------------GLRALARNDFSQALAI-------RPDMPE 78 (275)
T ss_dssp ---------------------------------------------------TCHHHHHHHHHHHHHH-------CCCCHH
T ss_pred ---------------------------------------------------ccHHHHHHHHHHHHHc-------CCCcHH
Confidence 3566787777777765 234577
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 236 ILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 236 v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
+|..||.++...|+|++|+.+|++++.+... .+.+|++||.+|...|++++|+.+|++++.+.
T Consensus 79 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 141 (275)
T 1xnf_A 79 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--------YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 141 (275)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCcc--------ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 8999999999999999999999999987322 24889999999999999999999999998764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.8e-11 Score=106.10 Aligned_cols=128 Identities=13% Similarity=0.112 Sum_probs=103.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcccc
Q 011692 70 MEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSV 149 (479)
Q Consensus 70 ~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~ 149 (479)
+..+..++..|+|++|+.+|.+++.+ +|..+.+|+.+|.+++..
T Consensus 14 ~~~~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~---------------------------- 57 (177)
T 2e2e_A 14 RDPLHQFASQQNPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWQ---------------------------- 57 (177)
T ss_dssp STTTCCCC-----CCCCHHHHHHHHH--------CCSCHHHHHHHHHHHHHT----------------------------
T ss_pred hhhhhhhhhccCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHc----------------------------
Confidence 33444567789999999999999998 788999999999999875
Q ss_pred ccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCC
Q 011692 150 KNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGD 229 (479)
Q Consensus 150 ~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~ 229 (479)
++++.|...|+.++.+.
T Consensus 58 ---------------------------------------------------------~~~~~A~~~~~~al~~~------ 74 (177)
T 2e2e_A 58 ---------------------------------------------------------NDYSNSLLAYRQALQLR------ 74 (177)
T ss_dssp ---------------------------------------------------------TCHHHHHHHHHHHHHHH------
T ss_pred ---------------------------------------------------------CCHHHHHHHHHHHHHcC------
Confidence 45777888888887664
Q ss_pred cchHHHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 230 SMEKVDILSALAEV-ALEREDI--ETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 230 ~~~~A~v~~~LGev-~le~g~y--eeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
+....++..||.+ +...|+| ++|+..|++++.+.. ++ ..++++||.+|...|++++|+.+|++++.+
T Consensus 75 -p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p-----~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 75 -GENAELYAALATVLYYQASQHMTAQTRAMIDKALALDS-----NE---ITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp -CSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT-----TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -CCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC-----Cc---HHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 2346789999999 8899999 999999999998732 22 578999999999999999999999998864
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.12 E-value=6.8e-10 Score=99.76 Aligned_cols=101 Identities=11% Similarity=0.052 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..++.+|..++.+|+|++|+.+|.+++.+ +|..+.+|+++|.+|+.+
T Consensus 34 ~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~--------~P~~~~~~~~lg~~~~~~---------------------- 83 (151)
T 3gyz_A 34 DMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY--------DFYNVDYIMGLAAIYQIK---------------------- 83 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHH----------------------
Confidence 35778999999999999999999999999999 899999999999999875
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++|+.|.+.|+.|+.+.
T Consensus 84 ---------------------------------------------------------------g~~~~Ai~~~~~al~l~ 100 (151)
T 3gyz_A 84 ---------------------------------------------------------------EQFQQAADLYAVAFALG 100 (151)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHHS
T ss_pred ---------------------------------------------------------------ccHHHHHHHHHHHHhhC
Confidence 45777888888887663
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
|....+|++||.++..+|+|++|+..|+++|.+.
T Consensus 101 -------P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 101 -------KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp -------SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3456799999999999999999999999999985
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.11 E-value=9.5e-10 Score=92.40 Aligned_cols=85 Identities=16% Similarity=-0.008 Sum_probs=73.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|...|+.++.+. +..+.+|.++|.++..+|+|++|+.+|+++|.+.. ....+|++||.+|
T Consensus 18 ~~~~~A~~~~~~al~~~-------p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~lg~~~ 82 (126)
T 3upv_A 18 SDWPNAVKAYTEMIKRA-------PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP--------NFVRAYIRKATAQ 82 (126)
T ss_dssp TCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHH
Confidence 46778888888877652 34578999999999999999999999999999843 2368999999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
..+|++++|+.+|++++.+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999999875
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.11 E-value=4e-10 Score=117.80 Aligned_cols=137 Identities=18% Similarity=0.184 Sum_probs=109.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-------CCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-------GELALECVNAYYQYGRALLYKAQEEADPLVSVPK 134 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-------Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~ 134 (479)
....+..+..+|..++.+|+|.+|+.+|.+|+++.-... .+..+..+.+|+++|.+|+.+
T Consensus 264 ~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~------------- 330 (457)
T 1kt0_A 264 KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL------------- 330 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHT-------------
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 345688999999999999999999999999999842210 001233479999999999876
Q ss_pred CcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHH
Q 011692 135 KEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWK 214 (479)
Q Consensus 135 ~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe 214 (479)
++|+.|..
T Consensus 331 ------------------------------------------------------------------------g~~~~A~~ 338 (457)
T 1kt0_A 331 ------------------------------------------------------------------------REYTKAVE 338 (457)
T ss_dssp ------------------------------------------------------------------------TCHHHHHH
T ss_pred ------------------------------------------------------------------------cCHHHHHH
Confidence 45778888
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH
Q 011692 215 MLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294 (479)
Q Consensus 215 ~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee 294 (479)
.|+.|+.+. +..+.+|+++|.+|+.+++|++|+.+|++||++... ...++++|+.+|..++++++
T Consensus 339 ~~~~al~~~-------p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~--------~~~a~~~l~~~~~~~~~~~~ 403 (457)
T 1kt0_A 339 CCDKALGLD-------SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--------NKAARLQISMCQKKAKEHNE 403 (457)
T ss_dssp HHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcC-------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHHHH
Confidence 888887753 345889999999999999999999999999988433 34789999999999998887
Q ss_pred HHHH
Q 011692 295 AIPY 298 (479)
Q Consensus 295 Ai~~ 298 (479)
|...
T Consensus 404 a~~~ 407 (457)
T 1kt0_A 404 RDRR 407 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7643
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-09 Score=100.33 Aligned_cols=147 Identities=9% Similarity=0.048 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++..|+|++|+.+|.+++++ .+.++....+++++|.+++..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~lg~~~~~~------------------------ 54 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKN------------------------ 54 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSTTHHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhc------------------------
Confidence 567899999999999999999999999986 234566778999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|...|+.++.++-.
T Consensus 55 -------------------------------------------------------------~~~~~A~~~~~~~l~~~P~ 73 (225)
T 2yhc_A 55 -------------------------------------------------------------ADLPLAQAAIDRFIRLNPT 73 (225)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHHHHCTT
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHHCcC
Confidence 3466676666666554321
Q ss_pred hcCCcchHHHHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHHHHHhcCC---------CChhHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALE------------------REDIETSLSDYQKALTILERMVEP---------DSRHIAEL 278 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le------------------~g~yeeAl~dy~kAL~I~~~llg~---------d~r~iAea 278 (479)
......+|..+|.++.. .|++++|+..|++++++....... -...++..
T Consensus 74 ----~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~ 149 (225)
T 2yhc_A 74 ----HPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY 149 (225)
T ss_dssp ----CTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred ----CCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence 23345566666666654 689999999999988764321100 00123445
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 279 NFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 279 ~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
++.+|.+|...|+|++|+..|+++|+.+
T Consensus 150 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 177 (225)
T 2yhc_A 150 EYSVAEYYTERGAWVAVVNRVEGMLRDY 177 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHC
Confidence 5889999999999999999999998763
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-09 Score=108.18 Aligned_cols=154 Identities=10% Similarity=0.047 Sum_probs=124.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
.....|..+|..++.+|+|++|.++|.+++.++... +. +...+.++..+|..+.
T Consensus 53 ~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~-~~-~~~~~~~~~~l~~~~~------------------------ 106 (434)
T 4b4t_Q 53 EQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQF-AK-SKTVKVLKTLIEKFEQ------------------------ 106 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTS-CH-HHHHHHHHHHHHHHCS------------------------
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc-cc-hHHHHHHHHHHHHHHh------------------------
Confidence 345678999999999999999999999999986543 11 2222334444443321
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
..++++.|.+++..+..++
T Consensus 107 -------------------------------------------------------------~~~~~~~a~~~~~~~~~~~ 125 (434)
T 4b4t_Q 107 -------------------------------------------------------------VPDSLDDQIFVCEKSIEFA 125 (434)
T ss_dssp -------------------------------------------------------------CCSCHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------CCCCHHHHHHHHHHHHHHH
Confidence 1156788999999999998
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.+.. .....+.++.+||.++.+.|+|.+|+..|++++.+..... +++..+++|.++|.+|...++|++|..+|++++
T Consensus 126 ~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 126 KREK-RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD--DKPSLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHSS-CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS--CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhC-ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 7764 3456899999999999999999999999999998877653 678899999999999999999999999999999
Q ss_pred HHHH
Q 011692 304 SVCK 307 (479)
Q Consensus 304 ~I~k 307 (479)
.+..
T Consensus 203 ~~~~ 206 (434)
T 4b4t_Q 203 TAAN 206 (434)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8864
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-09 Score=111.01 Aligned_cols=173 Identities=17% Similarity=0.160 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
...+..+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+++..++.+... +-....
T Consensus 304 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------- 366 (514)
T 2gw1_A 304 SSVYYHRGQMNFILQNYDQAGKDFDKAKEL--------DPENIFPYIQLACLAYRENKFDDCETLFSEAKR--------- 366 (514)
T ss_dssp THHHHHHHHHHHHTTCTTHHHHHHHHHHHT--------CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------
Confidence 346889999999999999999999999986 5677789999999998876543210 000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
..+... .. .. ..+...-..++++.|..+|+.++.+.
T Consensus 367 ---------~~~~~~------~~--------~~---------------------~la~~~~~~~~~~~A~~~~~~a~~~~ 402 (514)
T 2gw1_A 367 ---------KFPEAP------EV--------PN---------------------FFAEILTDKNDFDKALKQYDLAIELE 402 (514)
T ss_dssp ---------HSTTCS------HH--------HH---------------------HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------HcccCH------HH--------HH---------------------HHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 000000 00 00 00000112367888888888888776
Q ss_pred HHhcCCcchHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALE---REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le---~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~e 300 (479)
..... ....+.+|..||.++.. .|+|++|+..|++++.+.. ....+|+.||.+|...|++++|+.+|+
T Consensus 403 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 403 NKLDG-IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP--------RSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HTSSS-CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccch-HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 55432 12336699999999999 9999999999999998732 235889999999999999999999999
Q ss_pred HHHHHHHH
Q 011692 301 KAISVCKS 308 (479)
Q Consensus 301 kAL~I~k~ 308 (479)
+++.+...
T Consensus 474 ~a~~~~~~ 481 (514)
T 2gw1_A 474 ESADLART 481 (514)
T ss_dssp HHHHHCSS
T ss_pred HHHHhccc
Confidence 99987543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.1e-09 Score=108.00 Aligned_cols=89 Identities=10% Similarity=-0.099 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|+.+|+.++.+. +........+|..||.++...|+|++|+..|++++.+. |..+.+|++||.+|
T Consensus 271 g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--------p~~~~~~~~l~~~~ 339 (450)
T 2y4t_A 271 GRYTDATSKYESVMKTE---PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME--------PDNVNALKDRAEAY 339 (450)
T ss_dssp TCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------cccHHHHHHHHHHH
Confidence 56788888888887653 22223347799999999999999999999999999883 23358999999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...|++++|+.+|++++.+.
T Consensus 340 ~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 340 LIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTTS
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999998763
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.08 E-value=5.8e-09 Score=87.79 Aligned_cols=102 Identities=23% Similarity=0.270 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++..|+|++|+.+|.+++.+ .|..+.+|+++|.+++.+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~~~~~~~~~~l~~~~~~~------------------------ 56 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKM------------------------ 56 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--------CcCcHHHHHHHHHHHHHh------------------------
Confidence 678899999999999999999999999998 688899999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|...|+.++.+.
T Consensus 57 -------------------------------------------------------------~~~~~A~~~~~~al~~~-- 73 (137)
T 3q49_B 57 -------------------------------------------------------------QQPEQALADCRRALELD-- 73 (137)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHHHHC--
T ss_pred -------------------------------------------------------------cCHHHHHHHHHHHHHhC--
Confidence 35677888888877653
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM 267 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~l 267 (479)
+....+|..||.++..+|+|++|+..|++++.+....
T Consensus 74 -----p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~ 110 (137)
T 3q49_B 74 -----GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 110 (137)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -----chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhH
Confidence 3457899999999999999999999999999998873
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.07 E-value=8e-09 Score=84.73 Aligned_cols=92 Identities=24% Similarity=0.260 Sum_probs=79.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|..+|+.++.+. +..+.+|..||.++...|+|++|+.+|++++.+.... +.+++.++.+|++||.+|
T Consensus 18 ~~~~~A~~~~~~a~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~la~~~ 89 (131)
T 1elr_A 18 KDFDTALKHYDKAKELD-------PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGREN-REDYRQIAKAYARIGNSY 89 (131)
T ss_dssp TCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-------CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHHHH
Confidence 46777888888777653 2347899999999999999999999999999998754 456667789999999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...+++++|+.+|++++.+.
T Consensus 90 ~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 90 FKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHhccHHHHHHHHHHHHHhC
Confidence 99999999999999999874
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.07 E-value=6.4e-11 Score=118.69 Aligned_cols=128 Identities=14% Similarity=0.026 Sum_probs=106.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCCCC
Q 011692 78 KESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGES 157 (479)
Q Consensus 78 ~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~e~ 157 (479)
.+++|++|+++|.+++++ .|..+.+|+.+|.+|+..
T Consensus 125 ~L~~~~~A~~~~~~a~~~--------~p~~a~~~~~~g~~~~~~------------------------------------ 160 (336)
T 1p5q_A 125 HLKSFEKAKESWEMNSEE--------KLEQSTIVKERGTVYFKE------------------------------------ 160 (336)
T ss_dssp EEEEEECCCCGGGCCHHH--------HHHHHHHHHHHHHHHHHH------------------------------------
T ss_pred EEeecccccchhcCCHHH--------HHHHHHHHHHHHHHHHHC------------------------------------
Confidence 567888999999999887 588999999999999976
Q ss_pred CcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC--------C
Q 011692 158 STASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG--------D 229 (479)
Q Consensus 158 a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~--------~ 229 (479)
++|+.|...|+.|+.+...... .
T Consensus 161 -------------------------------------------------g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~ 191 (336)
T 1p5q_A 161 -------------------------------------------------GKYKQALLQYKKIVSWLEYESSFSNEEAQKA 191 (336)
T ss_dssp -------------------------------------------------TCHHHHHHHHHHHHHHTTTCCCCCSHHHHHH
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHHhhccccCChHHHHHH
Confidence 3567778888888776543311 0
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 230 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 230 ~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
.+..+.+|.+||.+++.+|+|++|+.+|+++|.+.. ..+.+|++||.+|..+++|++|+.+|++||.+.
T Consensus 192 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 260 (336)
T 1p5q_A 192 QALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS--------NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 260 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 123478999999999999999999999999999843 236899999999999999999999999999863
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2e-09 Score=110.36 Aligned_cols=173 Identities=18% Similarity=0.143 Sum_probs=124.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
...+..+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+++..++.+... |-....
T Consensus 310 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--------- 372 (537)
T 3fp2_A 310 PPTYYHRGQMYFILQDYKNAKEDFQKAQSL--------NPENVYPYIQLACLLYKQGKFTESEAFFNETKL--------- 372 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------
Confidence 567899999999999999999999999997 6777889999999999886553221 000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
..+... .. . -..+...-..++++.|...|+.++.+.
T Consensus 373 ---------~~~~~~------~~--------~---------------------~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 373 ---------KFPTLP------EV--------P---------------------TFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp ---------HCTTCT------HH--------H---------------------HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---------hCCCCh------HH--------H---------------------HHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 000000 00 0 000001123478899999999999888
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChh
Q 011692 224 EKHWGDSMEKVDILSALAEVALER----------EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 293 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~----------g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~e 293 (479)
....... .....+..+|.++... |+|++|+..|++++.+.. + ...+|++||.+|...|+++
T Consensus 409 ~~~~~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-----~---~~~~~~~l~~~~~~~g~~~ 479 (537)
T 3fp2_A 409 EVQEKIH-VGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDP-----R---SEQAKIGLAQLKLQMEKID 479 (537)
T ss_dssp HHCSSCS-STTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHH
T ss_pred CcchhhH-HHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCC-----C---CHHHHHHHHHHHHHhccHH
Confidence 6654322 2334567788888888 999999999999998832 2 2488999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISVCKS 308 (479)
Q Consensus 294 eAi~~~ekAL~I~k~ 308 (479)
+|+.+|++++.+...
T Consensus 480 ~A~~~~~~al~~~~~ 494 (537)
T 3fp2_A 480 EAIELFEDSAILART 494 (537)
T ss_dssp HHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999999988554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.07 E-value=4.1e-09 Score=105.77 Aligned_cols=138 Identities=17% Similarity=0.192 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..++.+|..++..|+|++|+.+|.+++++ +|..+.+|+.+|.+++..
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--------~p~~~~~~~~l~~~~~~~---------------------- 73 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDG--------DPDNYIAYYRRATVFLAM---------------------- 73 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHC----------------------
Confidence 34778999999999999999999999999987 788899999999999875
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|..+|+.++.+.
T Consensus 74 ---------------------------------------------------------------g~~~~A~~~~~~al~~~ 90 (450)
T 2y4t_A 74 ---------------------------------------------------------------GKSKAALPDLTKVIQLK 90 (450)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHHC
T ss_pred ---------------------------------------------------------------CCHHHHHHHHHHHHhcC
Confidence 35667887777776542
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh------------HHHHHHHHHHHHHcCCC
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH------------IAELNFRICLCLEIGSK 291 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~------------iAea~~~LG~ay~~~g~ 291 (479)
+....+|..||.++..+|+|++|+..|++++.+. +++.. ....++.+|.+|...|+
T Consensus 91 -------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 91 -------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN-----PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD 158 (450)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred -------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3457899999999999999999999999998752 23221 12235667888999999
Q ss_pred hhHHHHHHHHHHHHH
Q 011692 292 PQEAIPYCQKAISVC 306 (479)
Q Consensus 292 ~eeAi~~~ekAL~I~ 306 (479)
+++|+.+|++++.+.
T Consensus 159 ~~~A~~~~~~~~~~~ 173 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC 173 (450)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.06 E-value=3.5e-09 Score=110.53 Aligned_cols=171 Identities=14% Similarity=0.156 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
...+..+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+|...++.+... |-....
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------- 435 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTM--------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--------- 435 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------
Confidence 677888999999999999999999999987 6888899999999999986553321 100000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
..+... ... -.........++++.|+++|+.++.+.
T Consensus 436 ---------~~~~~~------~~~-----------------------------~~l~~~~~~~g~~~~A~~~~~~~~~~~ 471 (597)
T 2xpi_A 436 ---------LFQGTH------LPY-----------------------------LFLGMQHMQLGNILLANEYLQSSYALF 471 (597)
T ss_dssp ---------TTTTCS------HHH-----------------------------HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ---------hCccch------HHH-----------------------------HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 000000 000 000000112356777777777666442
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
+....+|+.||.++...|+|++|+..|++++.+.+.. +.+....+.+|+.||.+|...|++++|+.+|++++
T Consensus 472 -------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 472 -------QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKT-QSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp -------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS-CCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcc-ccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 2346789999999999999999999999999998764 22333357999999999999999999999999998
Q ss_pred HH
Q 011692 304 SV 305 (479)
Q Consensus 304 ~I 305 (479)
.+
T Consensus 544 ~~ 545 (597)
T 2xpi_A 544 LL 545 (597)
T ss_dssp HH
T ss_pred Hh
Confidence 76
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-11 Score=128.01 Aligned_cols=130 Identities=17% Similarity=0.183 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
+.+..+..+|..++.+|+|++|+.+|.+|+++ +|..+.+|+++|.+|+.+
T Consensus 4 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--------~p~~~~~~~~lg~~~~~~---------------------- 53 (477)
T 1wao_1 4 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRT---------------------- 53 (477)
T ss_dssp HHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT----------------------
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHh----------------------
Confidence 45677888999999999999999999999998 899999999999999875
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|.+.|+.|+.+
T Consensus 54 ---------------------------------------------------------------g~~~~A~~~~~~al~l- 69 (477)
T 1wao_1 54 ---------------------------------------------------------------ECYGYALGDATRAIEL- 69 (477)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHS-
T ss_pred ---------------------------------------------------------------cCHHHHHHHHHHHHHh-
Confidence 3567788888877765
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH--HHcCCChhHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC--LEIGSKPQEAIPYCQK 301 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a--y~~~g~~eeAi~~~ek 301 (479)
.+..+.+|.+||.++..+|+|++|+.+|+++|++.. ++ ..++++|+.+ |..+++|++|+.+|++
T Consensus 70 ------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p-----~~---~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 70 ------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-----HD---KDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-----TC---TTHHHHHHHHHHHHHHHHHCCC------
T ss_pred ------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC---HHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 345688999999999999999999999999999832 22 3578888888 8888999999999983
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.05 E-value=4e-10 Score=113.11 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=33.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 011692 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEI 95 (479)
Q Consensus 59 ~~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei 95 (479)
....+..+..+..+|..++..|+|++|+.+|.+|+.+
T Consensus 172 ~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~ 208 (338)
T 2if4_A 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAY 208 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 3445678999999999999999999999999999998
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.9e-09 Score=107.19 Aligned_cols=75 Identities=16% Similarity=0.096 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHhc--CCCC----hhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 234 VDILSALAEVALE---REDIETSLSDYQKALTILERMV--EPDS----RHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 234 A~v~~~LGev~le---~g~yeeAl~dy~kAL~I~~~ll--g~d~----r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
..++..+|.+++. .|+|++|+..|++++.+.+..+ .+++ +..+.+|+.+|.+|...|++++|+.+|++++.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 265 (514)
T 2gw1_A 186 ADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265 (514)
T ss_dssp HHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 8889999999997 9999999999999999877666 4444 77899999999999999999999999999987
Q ss_pred HHHH
Q 011692 305 VCKS 308 (479)
Q Consensus 305 I~k~ 308 (479)
+...
T Consensus 266 ~~~~ 269 (514)
T 2gw1_A 266 LFPR 269 (514)
T ss_dssp HCCC
T ss_pred hCcc
Confidence 6543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-09 Score=110.60 Aligned_cols=139 Identities=15% Similarity=0.122 Sum_probs=112.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--------hCCCChhHHHHHHHHHHHHHhhhhccCCcCC
Q 011692 59 REKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSH--------YGELALECVNAYYQYGRALLYKAQEEADPLV 130 (479)
Q Consensus 59 ~~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~--------~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG 130 (479)
....+..+..|..+|..++.+|+|++|+.+|.+|+++.... .....|..+.+|+++|.+|+.+
T Consensus 216 ~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~--------- 286 (370)
T 1ihg_A 216 VDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM--------- 286 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT---------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 34466779999999999999999999999999999976542 1225788999999999999875
Q ss_pred CCCCCcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHH
Q 011692 131 SVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLD 210 (479)
Q Consensus 131 ~~~~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle 210 (479)
++++
T Consensus 287 ----------------------------------------------------------------------------g~~~ 290 (370)
T 1ihg_A 287 ----------------------------------------------------------------------------SDWQ 290 (370)
T ss_dssp ----------------------------------------------------------------------------TCHH
T ss_pred ----------------------------------------------------------------------------cCHH
Confidence 3466
Q ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCC
Q 011692 211 LAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS 290 (479)
Q Consensus 211 ~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g 290 (479)
.|++.++.|+.+ .+..+.+|++||.++..+++|++|+.+|++||++.. ++ ..++..|+.++..++
T Consensus 291 ~A~~~~~~al~~-------~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-----~~---~~~~~~l~~~~~~~~ 355 (370)
T 1ihg_A 291 GAVDSCLEALEI-------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-----ED---KAIQAELLKVKQKIK 355 (370)
T ss_dssp HHHHHHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC---HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-------CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CC---HHHHHHHHHHHHHHH
Confidence 777777777653 345789999999999999999999999999999843 22 467888888888877
Q ss_pred ChhHHHH
Q 011692 291 KPQEAIP 297 (479)
Q Consensus 291 ~~eeAi~ 297 (479)
+++++..
T Consensus 356 ~~~~a~k 362 (370)
T 1ihg_A 356 AQKDKEK 362 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766644
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=8e-09 Score=91.14 Aligned_cols=102 Identities=14% Similarity=0.143 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..++.+|..++.+|+|++|+.+|.+++.+ .|..+.+|+++|.+|+..
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~---------------------- 68 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--------DHYDSRFFLGLGACRQAM---------------------- 68 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT----------------------
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--------CcccHHHHHHHHHHHHHH----------------------
Confidence 34678899999999999999999999999998 799999999999999875
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|...|+.|+.+.
T Consensus 69 ---------------------------------------------------------------g~~~~A~~~~~~al~l~ 85 (148)
T 2vgx_A 69 ---------------------------------------------------------------GQYDLAIHSYSYGAVMD 85 (148)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHHS
T ss_pred ---------------------------------------------------------------hhHHHHHHHHHHHHhcC
Confidence 45777888888887653
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
+....+|++||.++..+|+|++|+..|++++++..
T Consensus 86 -------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 86 -------IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp -------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred -------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 34567899999999999999999999999999975
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.02 E-value=5.7e-09 Score=98.87 Aligned_cols=162 Identities=14% Similarity=0.147 Sum_probs=112.2
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 66 ADELMEKGTNALK----ESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 66 A~~L~~~G~~~~~----~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
+..+..+|..++. .++|++|+.+|.+|+++ | .+.+++++|.+++..- .+.++..
T Consensus 38 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-----~-----~~~a~~~lg~~~~~g~----~~~~~~~-------- 95 (273)
T 1ouv_A 38 NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL-----N-----YSNGCHLLGNLYYSGQ----GVSQNTN-------- 95 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHTS----SSCCCHH--------
T ss_pred HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHHhCCC----CcccCHH--------
Confidence 4567889999999 99999999999999986 1 5789999999998720 1111100
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCcccc----ccccCcChHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVA----EADEDESDLDLAWKMLD 217 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~----~~~ed~~dle~Awe~Le 217 (479)
+...- -.++...+...... ..+ .+....++++.|+++|+
T Consensus 96 -----~A~~~--------------~~~a~~~~~~~a~~------------------~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 96 -----KALQY--------------YSKACDLKYAEGCA------------------SLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp -----HHHHH--------------HHHHHHTTCHHHHH------------------HHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred -----HHHHH--------------HHHHHHcCCccHHH------------------HHHHHHHcCCCcccCHHHHHHHHH
Confidence 00000 00000000000000 000 00012467888888888
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc----C
Q 011692 218 VARAIAEKHWGDSMEKVDILSALAEVALE----REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI----G 289 (479)
Q Consensus 218 ~Ar~Iyek~~~~~~~~A~v~~~LGev~le----~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~----~ 289 (479)
.|..+ ....++.+||.++.. .++|++|+..|++++++ .+ +.++++||.+|.. .
T Consensus 139 ~a~~~---------~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~---~~a~~~lg~~~~~g~~~~ 199 (273)
T 1ouv_A 139 KACDL---------NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-------KD---SPGCFNAGNMYHHGEGAT 199 (273)
T ss_dssp HHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTCSSC
T ss_pred HHHhc---------CcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCCC
Confidence 87752 246789999999999 99999999999999976 12 5899999999999 9
Q ss_pred CChhHHHHHHHHHHHH
Q 011692 290 SKPQEAIPYCQKAISV 305 (479)
Q Consensus 290 g~~eeAi~~~ekAL~I 305 (479)
+++++|+.+|++++++
T Consensus 200 ~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 200 KNFKEALARYSKACEL 215 (273)
T ss_dssp CCHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHhC
Confidence 9999999999999976
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.4e-08 Score=101.86 Aligned_cols=150 Identities=10% Similarity=0.002 Sum_probs=128.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccc
Q 011692 69 LMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDS 148 (479)
Q Consensus 69 L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~ 148 (479)
+...|..+...|+|+.|+.+|.+++.+...... .+..+.+++++|.+++..
T Consensus 98 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~la~~~~~~--------------------------- 148 (434)
T 4b4t_Q 98 KTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKR--VFLKHSLSIKLATLHYQK--------------------------- 148 (434)
T ss_dssp HHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC--CSSHHHHHHHHHHHHHHH---------------------------
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc--cHHHHHHHHHHHHHHHHc---------------------------
Confidence 344566677789999999999999999876643 456899999999999875
Q ss_pred cccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC
Q 011692 149 VKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG 228 (479)
Q Consensus 149 ~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~ 228 (479)
++|..|..+|..++.++.+..
T Consensus 149 ----------------------------------------------------------g~~~~A~~~l~~~~~~~~~~~- 169 (434)
T 4b4t_Q 149 ----------------------------------------------------------KQYKDSLALINDLLREFKKLD- 169 (434)
T ss_dssp ----------------------------------------------------------TCHHHHHHHHHHHHHHHTTSS-
T ss_pred ----------------------------------------------------------cChHHHHHHHHHHHHHHHhcc-
Confidence 468889999999988876653
Q ss_pred CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 229 DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 229 ~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
+++..+.+|..+|.+|...++|++|...|++++.+...+. ..++..+..+.++|..|...++|++|..+|.+++..+.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~~~ 247 (434)
T 4b4t_Q 170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIY-CPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFESYH 247 (434)
T ss_dssp CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCC-CchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 4678899999999999999999999999999999998774 34567899999999999999999999999999998764
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1e-08 Score=88.69 Aligned_cols=102 Identities=13% Similarity=0.129 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..++.+|..++..|+|++|+.+|.+++.+ +|....+|+.+|.+|+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~----------------------- 65 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCML--------DHYDARYFLGLGACRQSL----------------------- 65 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHH-----------------------
Confidence 4678899999999999999999999999998 789999999999999875
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++++.|...|+.|+.+.
T Consensus 66 --------------------------------------------------------------g~~~~A~~~~~~al~~~- 82 (142)
T 2xcb_A 66 --------------------------------------------------------------GLYEQALQSYSYGALMD- 82 (142)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHHHC-
T ss_pred --------------------------------------------------------------hhHHHHHHHHHHHHhcC-
Confidence 45777888888887653
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 266 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ 266 (479)
+....+|+.||.++..+|+|++|+..|++++.+...
T Consensus 83 ------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 118 (142)
T 2xcb_A 83 ------INEPRFPFHAAECHLQLGDLDGAESGFYSARALAAA 118 (142)
T ss_dssp ------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred ------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 344678999999999999999999999999999763
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.9e-09 Score=87.78 Aligned_cols=86 Identities=21% Similarity=0.108 Sum_probs=73.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|..+|..++.+. +....+|.+||.++..+++|++|+.+|++++.+.. ..+.+|++||.+|
T Consensus 23 ~~~~~A~~~~~~al~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--------~~~~~~~~l~~~~ 87 (137)
T 3q49_B 23 RKYPEAAACYGRAITRN-------PLVAVYYTNRALCYLKMQQPEQALADCRRALELDG--------QSVKAHFFLGQCQ 87 (137)
T ss_dssp TCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhhC-------cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHHH
Confidence 46778888888777652 34578999999999999999999999999999843 2357999999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
...|++++|+.+|++++.+..
T Consensus 88 ~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 88 LEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHCh
Confidence 999999999999999998744
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.99 E-value=1e-09 Score=120.54 Aligned_cols=129 Identities=16% Similarity=0.058 Sum_probs=107.4
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCCC
Q 011692 77 LKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGE 156 (479)
Q Consensus 77 ~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~e 156 (479)
+..|+|++|+++|.++++......+..+|..+.+|+.+|.+|+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~----------------------------------- 446 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDL----------------------------------- 446 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHH-----------------------------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhc-----------------------------------
Confidence 789999999999999995544555667899999999999999886
Q ss_pred CCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcchHHHH
Q 011692 157 SSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDI 236 (479)
Q Consensus 157 ~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v 236 (479)
++++.|...|+.++.+. +..+.+
T Consensus 447 --------------------------------------------------g~~~~A~~~~~~al~~~-------p~~~~a 469 (681)
T 2pzi_A 447 --------------------------------------------------GDVAKATRKLDDLAERV-------GWRWRL 469 (681)
T ss_dssp --------------------------------------------------TCHHHHHHHHHHHHHHH-------CCCHHH
T ss_pred --------------------------------------------------CCHHHHHHHHHHHhccC-------cchHHH
Confidence 35777888888777652 345889
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 237 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 237 ~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
|+++|.+++.+|+|++|+.+|++||++.... +.+|++||.+|..+|+|++ +.+|++||++-
T Consensus 470 ~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~--------~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~ 530 (681)
T 2pzi_A 470 VWYRAVAELLTGDYDSATKHFTEVLDTFPGE--------LAPKLALAATAELAGNTDE-HKFYQTVWSTN 530 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC--------SHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------hHHHHHHHHHHHHcCChHH-HHHHHHHHHhC
Confidence 9999999999999999999999999986433 5899999999999999999 99999999864
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=7.9e-10 Score=100.60 Aligned_cols=91 Identities=14% Similarity=0.005 Sum_probs=72.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcc---------hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSM---------EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAE 277 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~---------~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAe 277 (479)
++|+.|...|+.|+.++........ -.+.+|.+||.+++.+|+|++|+.+|+++|.+. +..+.
T Consensus 52 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~ 123 (198)
T 2fbn_A 52 NEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--------KNNVK 123 (198)
T ss_dssp TCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------TTCHH
T ss_pred CCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------cccHH
Confidence 4577777777777766543321111 125899999999999999999999999999983 23368
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 278 LNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 278 a~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
+|+++|.+|..+++|++|+.+|++++.+
T Consensus 124 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 124 ALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999976
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=1.7e-09 Score=114.59 Aligned_cols=120 Identities=13% Similarity=0.039 Sum_probs=86.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCCCCC
Q 011692 79 ESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESS 158 (479)
Q Consensus 79 ~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~e~a 158 (479)
.|+|++|+.+|.+++++ +|..+.+|+.+|.+|+..
T Consensus 2 ~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~------------------------------------- 36 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--------RPQDFVAWLMLADAELGM------------------------------------- 36 (568)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHH-------------------------------------
T ss_pred CccHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHc-------------------------------------
Confidence 47999999999999987 788899999999999876
Q ss_pred cccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcchHHHHHH
Q 011692 159 TASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILS 238 (479)
Q Consensus 159 ~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~ 238 (479)
++++.|.+.|+.|+.+ .+..+.+|.
T Consensus 37 ------------------------------------------------g~~~~A~~~~~~al~~-------~p~~~~~~~ 61 (568)
T 2vsy_A 37 ------------------------------------------------GDTTAGEMAVQRGLAL-------HPGHPEAVA 61 (568)
T ss_dssp ------------------------------------------------TCHHHHHHHHHHHHTT-------STTCHHHHH
T ss_pred ------------------------------------------------CCHHHHHHHHHHHHHh-------CCCCHHHHH
Confidence 3466677777666643 345688999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 239 ALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 239 ~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
+||.++..+|+|++|+.+|++++++.. + .+.+|++||.+|...|++++|+.+|++++++.
T Consensus 62 ~lg~~~~~~g~~~~A~~~~~~al~~~p-----~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 121 (568)
T 2vsy_A 62 RLGRVRWTQQRHAEAAVLLQQASDAAP-----E---HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL 121 (568)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCC-----C---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999842 2 26899999999999999999999999999874
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=8.6e-09 Score=82.96 Aligned_cols=115 Identities=19% Similarity=0.157 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..++.+|..++..|+|++|+.+|.+++.+ .|....+++.+|.+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~a~~~~~~----------------------- 51 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKK----------------------- 51 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH-----------------------
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHhh-----------------------
Confidence 5778999999999999999999999999997 577788999999999875
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++++.|...++.++.+.
T Consensus 52 --------------------------------------------------------------~~~~~A~~~~~~~~~~~- 68 (118)
T 1elw_A 52 --------------------------------------------------------------GDYQKAYEDGCKTVDLK- 68 (118)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHHHC-
T ss_pred --------------------------------------------------------------ccHHHHHHHHHHHHHhC-
Confidence 35667777777776652
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
+....+|..+|.++...|+|++|+..|++++.+. +++ ..+++.|+.+..
T Consensus 69 ------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~l~~~~~ 117 (118)
T 1elw_A 69 ------PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE-----ANN---PQLKEGLQNMEA 117 (118)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTC---HHHHHHHHHHHH
T ss_pred ------cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC-----CCC---HHHHHHHHHhhc
Confidence 3457899999999999999999999999998763 233 366777776653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.2e-09 Score=114.36 Aligned_cols=147 Identities=14% Similarity=0.065 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcC
Q 011692 67 DELMEKGTNALKE---------SDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEG 137 (479)
Q Consensus 67 ~~L~~~G~~~~~~---------gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~ 137 (479)
..+..+|..++.+ |+|++|+.+|.+|+++ .|..+.+|+++|.+|+...-. .
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~~~~------~------ 230 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--------DVLDGRSWYILGNAYLSLYFN------T------ 230 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHH------T------
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHh------h------
Confidence 5678899999999 9999999999999998 799999999999999876100 0
Q ss_pred CCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHH
Q 011692 138 DSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLD 217 (479)
Q Consensus 138 e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le 217 (479)
+ ...++++.|...|+
T Consensus 231 ----------------------------------------------~-------------------~~~g~~~~A~~~~~ 245 (474)
T 4abn_A 231 ----------------------------------------------G-------------------QNPKISQQALSAYA 245 (474)
T ss_dssp ----------------------------------------------T-------------------CCHHHHHHHHHHHH
T ss_pred ----------------------------------------------c-------------------cccchHHHHHHHHH
Confidence 0 01267889999999
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHH
Q 011692 218 VARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIP 297 (479)
Q Consensus 218 ~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~ 297 (479)
.|+.+.-. ....+.+|.+||.++..+|+|++|+.+|++++.+... ...++++|+.+|..++++++|+.
T Consensus 246 ~al~~~p~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--------~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 246 QAEKVDRK----ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA--------WPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHCGG----GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCC----cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 88876211 1257899999999999999999999999999998533 25899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 011692 298 YCQKAISVCKSRVQRL 313 (479)
Q Consensus 298 ~~ekAL~I~k~rl~~l 313 (479)
.|++. ...++..+
T Consensus 314 ~~~~~---~~~~l~~~ 326 (474)
T 4abn_A 314 SKGKT---KPKKLQSM 326 (474)
T ss_dssp HTTTC---CHHHHHHH
T ss_pred Hhccc---cCccHHHH
Confidence 99875 34444444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.97 E-value=2.2e-10 Score=119.82 Aligned_cols=127 Identities=14% Similarity=0.049 Sum_probs=105.8
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCCCC
Q 011692 78 KESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGES 157 (479)
Q Consensus 78 ~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~e~ 157 (479)
.+++|++|+++|.+++++ .|..+..|+.+|.+|+..
T Consensus 246 ~l~~~~~A~~~~~~~~~~--------~~~~a~~~~~~G~~~~~~------------------------------------ 281 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE--------KLEQAAIVKEKGTVYFKG------------------------------------ 281 (457)
T ss_dssp EEEEEECCCCGGGSCHHH--------HHHHHHHHHHHHHHHHHT------------------------------------
T ss_pred hhhhcccCcchhhcCHHH--------HHHHHHHHHHHHHHHHhC------------------------------------
Confidence 446778899999888887 588999999999999875
Q ss_pred CcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcC--------C
Q 011692 158 STASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWG--------D 229 (479)
Q Consensus 158 a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~--------~ 229 (479)
++|+.|...|+.|+.+...... .
T Consensus 282 -------------------------------------------------g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~ 312 (457)
T 1kt0_A 282 -------------------------------------------------GKYMQAVIQYGKIVSWLEMEYGLSEKESKAS 312 (457)
T ss_dssp -------------------------------------------------TCHHHHHHHHHHHHHHHTTCCSCCHHHHHHH
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHHhcccccCChHHHHHH
Confidence 4577788888888877643311 0
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 230 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 230 ~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
....+.+|++||.+++.+++|++|+.+|++||.+... .+.+||++|.+|..+++|++|+.+|++||.+
T Consensus 313 ~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 313 ESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA--------NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc--------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 1234789999999999999999999999999998532 3689999999999999999999999999976
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.2e-08 Score=81.10 Aligned_cols=116 Identities=24% Similarity=0.339 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++..|+|++|+.+|.+++.+ .|....+++.+|.+++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~la~~~~~~------------------------ 56 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQ------------------------ 56 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCcHHHHHHHHHHHHHh------------------------
Confidence 567889999999999999999999999987 567788999999999764
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|..+|+.+..+.
T Consensus 57 -------------------------------------------------------------~~~~~A~~~~~~~~~~~-- 73 (125)
T 1na0_A 57 -------------------------------------------------------------GDYDEAIEYYQKALELD-- 73 (125)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHHHHC--
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHHHHhC--
Confidence 35677877777776542
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 289 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 289 (479)
+....++..||.++...++|++|+..|++++.+.. ++ ..++++||.++...
T Consensus 74 -----~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-----~~---~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 74 -----PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----NN---AEAKQNLGNAKQKQ 124 (125)
T ss_dssp -----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC---HHHHHHHHHHHHHH
T ss_pred -----CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-----Cc---HHHHHHHHHHHHhc
Confidence 23467899999999999999999999999998732 22 46888888888654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.3e-09 Score=95.66 Aligned_cols=133 Identities=14% Similarity=0.070 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++..++|++|+.+|.+|++. ..+.+++++|.+|+.. | +
T Consensus 18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----------g~~~a~~~lg~~y~~~--------g-~------------- 65 (212)
T 3rjv_A 18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----------GDGDALALLAQLKIRN--------P-Q------------- 65 (212)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----------TCHHHHHHHHHHTTSS--------T-T-------------
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHcC--------C-C-------------
Confidence 678899999999999999999999999874 2467999999887541 0 0
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
..+++.|..+|+.|..
T Consensus 66 ------------------------------------------------------------~~~~~~A~~~~~~A~~---- 81 (212)
T 3rjv_A 66 ------------------------------------------------------------QADYPQARQLAEKAVE---- 81 (212)
T ss_dssp ------------------------------------------------------------SCCHHHHHHHHHHHHH----
T ss_pred ------------------------------------------------------------CCCHHHHHHHHHHHHH----
Confidence 0256667777766632
Q ss_pred hcCCcchHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc----CCChhHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALE----REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI----GSKPQEAIP 297 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le----~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~----~g~~eeAi~ 297 (479)
...+.++++||.+|.. .+++++|+..|++|+++- ++...+.++++||.+|.. .+++++|+.
T Consensus 82 -----~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 82 -----AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDS------ESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp -----TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSST------TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred -----CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcC------CCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 1346677788888777 777788877777776541 111346777888888877 667788888
Q ss_pred HHHHHHHH
Q 011692 298 YCQKAISV 305 (479)
Q Consensus 298 ~~ekAL~I 305 (479)
+|++|+++
T Consensus 151 ~~~~A~~~ 158 (212)
T 3rjv_A 151 YFKGSSSL 158 (212)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 88877764
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.7e-09 Score=103.92 Aligned_cols=102 Identities=23% Similarity=0.273 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+..+|..++..|+|++|+.+|.+|+.+ +|..+.+|+++|.+|+.+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~------------------------ 51 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKM------------------------ 51 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCccHHHHHHHHHHHHHh------------------------
Confidence 567899999999999999999999999998 788999999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|...|+.|+.+
T Consensus 52 -------------------------------------------------------------~~~~~A~~~~~~al~~--- 67 (281)
T 2c2l_A 52 -------------------------------------------------------------QQPEQALADCRRALEL--- 67 (281)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHTTS---
T ss_pred -------------------------------------------------------------cCHHHHHHHHHHHHHh---
Confidence 3466676666666543
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM 267 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~l 267 (479)
.+....+|++||.++..+|+|++|+.+|++++.+....
T Consensus 68 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 68 ----DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 45568899999999999999999999999999998864
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=6.4e-09 Score=88.67 Aligned_cols=99 Identities=22% Similarity=0.222 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcc
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de 147 (479)
.++.+|..++..|+|++|+.+|.+++++ .|.++.+|+.+|.+++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~-------------------------- 64 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAEN-------------------------- 64 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHT--------------------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHc--------------------------
Confidence 5788999999999999999999999998 899999999999999875
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011692 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 227 (479)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~ 227 (479)
++++.|...|+.|+.+
T Consensus 65 -----------------------------------------------------------g~~~~A~~~~~~al~l----- 80 (121)
T 1hxi_A 65 -----------------------------------------------------------EKDGLAIIALNHARML----- 80 (121)
T ss_dssp -----------------------------------------------------------TCHHHHHHHHHHHHHH-----
T ss_pred -----------------------------------------------------------CCHHHHHHHHHHHHHh-----
Confidence 3466777777777665
Q ss_pred CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011692 228 GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 266 (479)
Q Consensus 228 ~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ 266 (479)
.+....+|..||.++...|+|++|+..|+++|++...
T Consensus 81 --~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 81 --DPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 3456789999999999999999999999999987653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.91 E-value=3.9e-08 Score=96.37 Aligned_cols=161 Identities=11% Similarity=0.072 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
+..++.+|..++..|+|++|+.+|.+ |...++++.+|.+|+.+++.+... |-....
T Consensus 101 ~~~~~~la~~~~~~g~~~~Al~~l~~-------------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~--------- 158 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQ-------------GDSLECMAMTVQILLKLDRLDLARKELKKMQD--------- 158 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTT-------------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhC-------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---------
Confidence 45688999999999999999999987 456679999999999986653210 000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
.++.... .....+ ...--...++++.|+.+|+.++..
T Consensus 159 ---------~~p~~~~----~~l~~a-----------------------------~~~l~~~~~~~~eA~~~~~~~l~~- 195 (291)
T 3mkr_A 159 ---------QDEDATL----TQLATA-----------------------------WVSLAAGGEKLQDAYYIFQEMADK- 195 (291)
T ss_dssp ---------HCTTCHH----HHHHHH-----------------------------HHHHHHCTTHHHHHHHHHHHHHHH-
T ss_pred ---------hCcCcHH----HHHHHH-----------------------------HHHHHhCchHHHHHHHHHHHHHHh-
Confidence 0000000 000000 000000114455555555544433
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH-HHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE-AIPYCQKA 302 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee-Ai~~~ekA 302 (479)
.+..+.+|++||.+++.+|+|++|+..|+++|.+.. ++ +++|++||.++...|++.+ +..+|+++
T Consensus 196 ------~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p-----~~---~~~l~~l~~~~~~~g~~~eaa~~~~~~~ 261 (291)
T 3mkr_A 196 ------CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS-----GH---PETLINLVVLSQHLGKPPEVTNRYLSQL 261 (291)
T ss_dssp ------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC---HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC---HHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 345688999999999999999999999999998853 33 5789999999999999987 56888888
Q ss_pred HHH
Q 011692 303 ISV 305 (479)
Q Consensus 303 L~I 305 (479)
+++
T Consensus 262 ~~~ 264 (291)
T 3mkr_A 262 KDA 264 (291)
T ss_dssp HHH
T ss_pred HHh
Confidence 865
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-08 Score=84.83 Aligned_cols=90 Identities=13% Similarity=0.063 Sum_probs=76.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|...|+.+..++ + ..+....++..||.++...|+|++|+..|++++.+. ++++....++++||.+|
T Consensus 16 ~~~~~A~~~~~~~~~~~---p-~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 16 GKYDDASQLFLSFLELY---P-NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-----PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp TCHHHHHHHHHHHHHHC---S-SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTSTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC---C-CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-----CCCcccHHHHHHHHHHH
Confidence 56778888887776543 2 234566899999999999999999999999999863 56667789999999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
..+|++++|+.+|++++..
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999998865
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.90 E-value=7.8e-08 Score=79.95 Aligned_cols=118 Identities=18% Similarity=0.121 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCc
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~d 146 (479)
..++.+|..++..|+|++|+.+|.+++.+ .+.++....+++++|.+++..
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~~~~lg~~~~~~------------------------- 52 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLEL-----YPNGVYTPNALYWLGESYYAT------------------------- 52 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSSTTHHHHHHHHHHHHHHT-------------------------
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----CCCCcccHHHHHHHHHHHHHh-------------------------
Confidence 35788999999999999999999999986 345666668999999999875
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011692 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226 (479)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~ 226 (479)
++++.|...|+.++.++-
T Consensus 53 ------------------------------------------------------------~~~~~A~~~~~~~~~~~p-- 70 (129)
T 2xev_A 53 ------------------------------------------------------------RNFQLAEAQFRDLVSRYP-- 70 (129)
T ss_dssp ------------------------------------------------------------TCHHHHHHHHHHHHHHCT--
T ss_pred ------------------------------------------------------------ccHHHHHHHHHHHHHHCC--
Confidence 457788888888776542
Q ss_pred cCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 011692 227 WGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRIC 283 (479)
Q Consensus 227 ~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG 283 (479)
.......++..||.++..+|+|++|+..|++++.+. |+++....+..+|.
T Consensus 71 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~l~ 120 (129)
T 2xev_A 71 --THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQY-----PGSDAARVAQERLQ 120 (129)
T ss_dssp --TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTSHHHHHHHHHHH
T ss_pred --CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHH
Confidence 223458899999999999999999999999999874 45555444444443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.89 E-value=1.8e-08 Score=85.11 Aligned_cols=118 Identities=16% Similarity=0.161 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..++.+|..++..|+|++|+.+|.+++++ .+.++....+|+++|.+++..
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~~~~a~~~~~~----------------------- 78 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL-----DATPQDQAVLHRNRAACHLKL----------------------- 78 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-----cccchHHHHHHHHHHHHHHHH-----------------------
Confidence 3678899999999999999999999999986 222333489999999999875
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++++.|...|+.++.+.
T Consensus 79 --------------------------------------------------------------~~~~~A~~~~~~~~~~~- 95 (148)
T 2dba_A 79 --------------------------------------------------------------EDYDKAETEASKAIEKD- 95 (148)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHHHT-
T ss_pred --------------------------------------------------------------ccHHHHHHHHHHHHhhC-
Confidence 35777888888877652
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
+....+|..+|.++..+++|++|+..|++++.+. ++++ .++..|+.+..
T Consensus 96 ------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-----p~~~---~~~~~l~~~~~ 144 (148)
T 2dba_A 96 ------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLE-----PKNK---VFQEALRNISG 144 (148)
T ss_dssp ------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----SSCH---HHHHHHHHHHC
T ss_pred ------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCcH---HHHHHHHHHHh
Confidence 2347899999999999999999999999999874 3333 45555555544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1e-08 Score=91.06 Aligned_cols=135 Identities=14% Similarity=0.155 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+..+|..++.+|+|++|+.+|.+++.+ .|....+++.+|..+...++.+...-.. .
T Consensus 39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~a~~~~--~----------- 97 (184)
T 3vtx_A 39 VETLLKLGKTYMDIGLPNDAIESLKKFVVL--------DTTSAEAYYILGSANFMIDEKQAAIDAL--Q----------- 97 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHTTCHHHHHHHH--H-----------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CchhHHHHHHHHHHHHHcCCHHHHHHHH--H-----------
Confidence 678899999999999999999999999987 7888999999999998875432210000 0
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
.... ..+... ... -..+..-...++++.|.+.|+.++.+
T Consensus 98 -~a~~--~~~~~~-----------------~~~------------------~~lg~~~~~~g~~~~A~~~~~~~l~~--- 136 (184)
T 3vtx_A 98 -RAIA--LNTVYA-----------------DAY------------------YKLGLVYDSMGEHDKAIEAYEKTISI--- 136 (184)
T ss_dssp -HHHH--HCTTCH-----------------HHH------------------HHHHHHHHHTTCHHHHHHHHHHHHHH---
T ss_pred -HHHH--hCccch-----------------HHH------------------HHHHHHHHHhCCchhHHHHHHHHHHh---
Confidence 0000 000000 000 00000011235666676666666554
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 266 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ 266 (479)
.+..+.+|.+||.++..+|+|++|+.+|++||++.+.
T Consensus 137 ----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 137 ----KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp ----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred ----cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 3556889999999999999999999999999998654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.2e-08 Score=82.73 Aligned_cols=84 Identities=18% Similarity=0.117 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
+++.|..+|+.++.+ .+....+|..||.++...++|++|+..|++++.+.. ..+.++++||.+|.
T Consensus 31 ~~~~A~~~~~~al~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~la~~~~ 95 (133)
T 2lni_A 31 DYPQAMKHYTEAIKR-------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP--------TFIKGYTRKAAALE 95 (133)
T ss_dssp CSHHHHHHHHHHHTT-------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHc-------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--------CchHHHHHHHHHHH
Confidence 455566666555432 344588999999999999999999999999998732 23578999999999
Q ss_pred cCCChhHHHHHHHHHHHHH
Q 011692 288 IGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 288 ~~g~~eeAi~~~ekAL~I~ 306 (479)
..+++++|+.+|++++.+.
T Consensus 96 ~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHHHHhC
Confidence 9999999999999998763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.85 E-value=4.6e-09 Score=96.33 Aligned_cols=99 Identities=11% Similarity=0.002 Sum_probs=79.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCCCC
Q 011692 78 KESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGES 157 (479)
Q Consensus 78 ~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~e~ 157 (479)
..+.|++|+.+|.+|+++ +|..+++|+++|.+|+.+++.+..
T Consensus 14 r~~~feeA~~~~~~Ai~l--------~P~~aea~~n~G~~l~~l~~~~~g------------------------------ 55 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSI------------------------------ 55 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCH------------------------------
T ss_pred HHhHHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHhcccchh------------------------------
Confidence 456799999999999999 899999999999999998765210
Q ss_pred CcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcchHHHHH
Q 011692 158 STASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDIL 237 (479)
Q Consensus 158 a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~ 237 (479)
..|.++++.|+..|++.+...+..+++|
T Consensus 56 ----------------------------------------------------~~al~~~~eAi~~le~AL~ldP~~~~A~ 83 (158)
T 1zu2_A 56 ----------------------------------------------------SDAKQMIQEAITKFEEALLIDPKKDEAV 83 (158)
T ss_dssp ----------------------------------------------------HHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred ----------------------------------------------------hhhHhHHHHHHHHHHHHHHhCcCcHHHH
Confidence 1134455555566655554467789999
Q ss_pred HHHHHHHHhcC-----------CHHHHHHHHHHHHHHHHH
Q 011692 238 SALAEVALERE-----------DIETSLSDYQKALTILER 266 (479)
Q Consensus 238 ~~LGev~le~g-----------~yeeAl~dy~kAL~I~~~ 266 (479)
++||.+|..+| +|++|+.+|++||+|...
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 99999999885 899999999999999653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.4e-08 Score=94.43 Aligned_cols=170 Identities=13% Similarity=0.044 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
...+..++..+...+++++|+..|.+.+.. ..+|..+.+++.+|.+|+..++.+... |.. +
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~------~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~---------- 127 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSR------SVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-G---------- 127 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHS------CCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-C----------
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhc------ccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-C----------
Confidence 456667888888999999999999998864 236889999999999999986653321 100 0
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
... +... ..+..--..++++.|...|+.++.+.
T Consensus 128 ------------~~~-----------------~~~~------------------~l~~~~~~~g~~~~A~~~l~~~~~~~ 160 (291)
T 3mkr_A 128 ------------DSL-----------------ECMA------------------MTVQILLKLDRLDLARKELKKMQDQD 160 (291)
T ss_dssp ------------CSH-----------------HHHH------------------HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred ------------CCH-----------------HHHH------------------HHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 000 0000 00000112366777877777776652
Q ss_pred HHhcCCc-chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 224 EKHWGDS-MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 224 ek~~~~~-~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
++.. ..++.+| ..++...|+|++|+..|++++.+. |++ +.+|+++|.+|..+|++++|+.+|+++
T Consensus 161 ---p~~~~~~l~~a~---~~l~~~~~~~~eA~~~~~~~l~~~-----p~~---~~~~~~la~~~~~~g~~~eA~~~l~~a 226 (291)
T 3mkr_A 161 ---EDATLTQLATAW---VSLAAGGEKLQDAYYIFQEMADKC-----SPT---LLLLNGQAACHMAQGRWEAAEGVLQEA 226 (291)
T ss_dssp ---TTCHHHHHHHHH---HHHHHCTTHHHHHHHHHHHHHHHS-----CCC---HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---cCcHHHHHHHHH---HHHHhCchHHHHHHHHHHHHHHhC-----CCc---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 2210 1122222 233456699999999999999872 233 579999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 011692 303 ISVCKSRVQRL 313 (479)
Q Consensus 303 L~I~k~rl~~l 313 (479)
|.+.......+
T Consensus 227 l~~~p~~~~~l 237 (291)
T 3mkr_A 227 LDKDSGHPETL 237 (291)
T ss_dssp HHHCTTCHHHH
T ss_pred HHhCCCCHHHH
Confidence 98765443333
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.80 E-value=7.5e-08 Score=77.95 Aligned_cols=84 Identities=25% Similarity=0.316 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|.++|+.++.+. +....++..||.++...|+|++|+..|++++.+. +.+ ..++++||.+|
T Consensus 23 ~~~~~A~~~~~~~~~~~-------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~la~~~ 87 (125)
T 1na0_A 23 GDYDEAIEYYQKALELD-------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNN---AEAWYNLGNAY 87 (125)
T ss_dssp TCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-------cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----Ccc---HHHHHHHHHHH
Confidence 45777888887776542 2346789999999999999999999999999863 222 57899999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
...+++++|+.+|++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999876
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=8.6e-08 Score=78.24 Aligned_cols=84 Identities=19% Similarity=0.217 Sum_probs=70.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|...|+.++.+. +..+.+|..+|.++...++|++|+..|++++.+. +++ ..+++++|.+|
T Consensus 26 ~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~~~~~ 90 (131)
T 2vyi_A 26 ENFEAAVHFYGKAIELN-------PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-----PAY---SKAYGRMGLAL 90 (131)
T ss_dssp TCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-----ccC---HHHHHHHHHHH
Confidence 45777877777776542 2347899999999999999999999999999873 222 57899999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
...+++++|+.+|++++.+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999976
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.79 E-value=9.2e-09 Score=86.06 Aligned_cols=88 Identities=9% Similarity=-0.013 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|...|+.|+.+. ...+..+.+|.+||.++..+|+|++|+..|++++++.. ++ +.+|++||.+|
T Consensus 4 g~~~~A~~~~~~al~~~----~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-----~~---~~~~~~l~~~~ 71 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASG----LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-----NH---QALRVFYAMVL 71 (117)
T ss_dssp ---CCCHHHHHHHHSSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC---HHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcC----CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----Cc---hHHHHHHHHHH
Confidence 45556666666665431 01367889999999999999999999999999998843 23 68999999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...|++++|+.+|+++|.+.
T Consensus 72 ~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999763
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.77 E-value=3.3e-09 Score=97.28 Aligned_cols=83 Identities=19% Similarity=0.192 Sum_probs=66.7
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 011692 216 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDI----------ETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 285 (479)
Q Consensus 216 Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~y----------eeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 285 (479)
|+.|+..|++.....+..+++|+++|.+++++++| ++|+..|++||+|... .+.+||+||.+
T Consensus 18 feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~--------~~~A~~~LG~a 89 (158)
T 1zu2_A 18 FEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK--------KDEAVWCIGNA 89 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC--------cHHHHHHHHHH
Confidence 34444444444433567899999999999999886 5999999999999654 36999999999
Q ss_pred HHcCC-----------ChhHHHHHHHHHHHHH
Q 011692 286 LEIGS-----------KPQEAIPYCQKAISVC 306 (479)
Q Consensus 286 y~~~g-----------~~eeAi~~~ekAL~I~ 306 (479)
|..+| +|++|+.+|++||++-
T Consensus 90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 99875 8999999999999873
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-07 Score=81.79 Aligned_cols=84 Identities=15% Similarity=0.076 Sum_probs=71.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|...|+.++.+. +....+|..+|.++...|+|++|+..|++++.+.. ..+.+|+++|.+|
T Consensus 27 ~~~~~A~~~~~~al~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~--------~~~~~~~~~a~~~ 91 (166)
T 1a17_A 27 KDYENAIKFYSQAIELN-------PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK--------KYIKGYYRRAASN 91 (166)
T ss_dssp TCHHHHHHHHHHHHHHS-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhC-------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--------ccHHHHHHHHHHH
Confidence 46777888887777652 33578999999999999999999999999999842 2358899999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
...|++++|+.+|++++.+
T Consensus 92 ~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKV 110 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHh
Confidence 9999999999999999976
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.3e-08 Score=88.06 Aligned_cols=107 Identities=18% Similarity=0.147 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..++.+|..++..|+|++|+.+|.+|+++ +|..+.+|+++|.+++..
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~~~~lg~~~~~~------------------------ 84 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINR--------DKHLAVAYFQRGMLYYQT------------------------ 84 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT------------------------
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CccchHHHHHHHHHHHHc------------------------
Confidence 457899999999999999999999999998 688899999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|++.|+.++.+...
T Consensus 85 -------------------------------------------------------------~~~~~A~~~~~~al~~~~~ 103 (213)
T 1hh8_A 85 -------------------------------------------------------------EKYDLAIKDLKEALIQLRG 103 (213)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHHHTTTT
T ss_pred -------------------------------------------------------------ccHHHHHHHHHHHHHhCCC
Confidence 3577788888888776533
Q ss_pred hc---------CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 226 HW---------GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 226 ~~---------~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
.. ...+..+.+|.+||.++..+|+|++|+.+|++++.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 104 NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 21 02356789999999999999999999999999998743
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-08 Score=80.72 Aligned_cols=85 Identities=14% Similarity=0.072 Sum_probs=70.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|...|+.++.+. +....+|..+|.++...++|++|+..|++++.+.. . .....++++||.+|
T Consensus 20 ~~~~~A~~~~~~a~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-----~-~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 20 GNYTESIDLFEKAIQLD-------PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-----D-EYNKDVWAAKADAL 86 (112)
T ss_dssp CCHHHHHHHHHHHHHHC-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-----C-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-------cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-----c-cchHHHHHHHHHHH
Confidence 56778888888777652 23467899999999999999999999999998732 2 11358899999999
Q ss_pred HcC-CChhHHHHHHHHHHH
Q 011692 287 EIG-SKPQEAIPYCQKAIS 304 (479)
Q Consensus 287 ~~~-g~~eeAi~~~ekAL~ 304 (479)
... +++++|+.+|++++.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGG
T ss_pred HHHhCCHHHHHHHHHHHhh
Confidence 999 999999999998875
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.6e-08 Score=81.93 Aligned_cols=88 Identities=17% Similarity=0.139 Sum_probs=69.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|..+|+.++.+. ........+|..||.++...++|++|+..|++++.+. +++ ..+|+++|.+|
T Consensus 42 ~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~---~~~~~~~a~~~ 109 (148)
T 2dba_A 42 GDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-----GGD---VKALYRRSQAL 109 (148)
T ss_dssp TCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----SCC---HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-----ccC---HHHHHHHHHHH
Confidence 45666655555554321 1112348999999999999999999999999999873 222 68999999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...+++++|+.+|++++.+.
T Consensus 110 ~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 110 EKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHcC
Confidence 99999999999999999763
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-07 Score=95.59 Aligned_cols=91 Identities=13% Similarity=0.062 Sum_probs=76.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhc---------CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHW---------GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAE 277 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~---------~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAe 277 (479)
++++.|...|+.|+.++.... ...+..+.+|.+||.+++.+++|++|+.+|+++|++. +..+.
T Consensus 237 g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--------p~~~~ 308 (370)
T 1ihg_A 237 QNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--------PSNTK 308 (370)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCHH
T ss_pred cCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC--------chhHH
Confidence 467778888888888765531 1235678999999999999999999999999999863 23478
Q ss_pred HHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 278 LNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 278 a~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
+||+||.+|..+++|++|+.+|++|+.+
T Consensus 309 a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 309 ALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999975
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.5e-08 Score=86.45 Aligned_cols=85 Identities=9% Similarity=0.037 Sum_probs=69.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|...|+.++.+ .+..+.+|..||.++..+|+|++|+..|+++|++... + ..+|++||.+|
T Consensus 31 g~~~~A~~~~~~al~~-------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-----~---~~~~~~la~~~ 95 (121)
T 1hxi_A 31 ANLAEAALAFEAVCQK-------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-----D---IAVHAALAVSH 95 (121)
T ss_dssp TCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-----C---HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----C---HHHHHHHHHHH
Confidence 5566666666665543 4567889999999999999999999999999998433 2 47999999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...|++++|+.+|+++|.+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=1.2e-07 Score=76.14 Aligned_cols=84 Identities=15% Similarity=0.108 Sum_probs=70.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|..+|+.++.+. +....++..+|.++..+|+|++|+..|++++.+.. + ...+++++|.+|
T Consensus 18 ~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-----~---~~~~~~~~a~~~ 82 (118)
T 1elw_A 18 GNIDDALQCYSEAIKLD-------PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-----D---WGKGYSRKAAAL 82 (118)
T ss_dssp TCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-----c---cHHHHHHHHHHH
Confidence 46777888887776542 23477999999999999999999999999998732 2 257899999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
...|++++|+.+|++++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999998865
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.74 E-value=4.5e-08 Score=81.04 Aligned_cols=80 Identities=11% Similarity=0.061 Sum_probs=66.5
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHH
Q 011692 220 RAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC 299 (479)
Q Consensus 220 r~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ 299 (479)
+..|.+.+...+..+.+|+.||.+++..|+|++|+..|++++.+.. ..+.+|++||.+|...|++++|+.+|
T Consensus 5 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--------~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--------TYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--------CcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3344444443456688999999999999999999999999998742 23679999999999999999999999
Q ss_pred HHHHHHHH
Q 011692 300 QKAISVCK 307 (479)
Q Consensus 300 ekAL~I~k 307 (479)
++++.+..
T Consensus 77 ~~al~~~~ 84 (115)
T 2kat_A 77 ESGLAAAQ 84 (115)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99998754
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=87.91 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 66 ADELMEKGTNALKES----DYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 66 A~~L~~~G~~~~~~g----dyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
+..++.+|..++. + +|++|+.+|.+|++. ..+.+++++|.+|+.- .
T Consensus 50 ~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----------g~~~a~~~Lg~~y~~g---------~---------- 99 (212)
T 3rjv_A 50 GDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----------GSKSGEIVLARVLVNR---------Q---------- 99 (212)
T ss_dssp HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----------TCHHHHHHHHHHHTCG---------G----------
T ss_pred HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----------CCHHHHHHHHHHHHcC---------C----------
Confidence 4567888888777 7 999999999999763 4577999999988642 0
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
....|+..|.++|+.|..
T Consensus 100 --------------------------------------------------------------g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 100 --------------------------------------------------------------AGATDVAHAITLLQDAAR 117 (212)
T ss_dssp --------------------------------------------------------------GSSCCHHHHHHHHHHHTS
T ss_pred --------------------------------------------------------------CCccCHHHHHHHHHHHHH
Confidence 001467777777766653
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC------CC
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALE----REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG------SK 291 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le----~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~------g~ 291 (479)
+ ++....+.++++||.+|.. ..++++|+..|++|+++. .+ +.++++||.+|... .+
T Consensus 118 ~-----~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~------~~---~~a~~~Lg~~y~~g~gg~~~~d 183 (212)
T 3rjv_A 118 D-----SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS------RT---GYAEYWAGMMFQQGEKGFIEPN 183 (212)
T ss_dssp S-----TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS------CT---THHHHHHHHHHHHCBTTTBCCC
T ss_pred c-----CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC------CC---HHHHHHHHHHHHcCCCCCCCCC
Confidence 1 1111458999999999999 899999999999998761 12 35899999999864 28
Q ss_pred hhHHHHHHHHHHHH
Q 011692 292 PQEAIPYCQKAISV 305 (479)
Q Consensus 292 ~eeAi~~~ekAL~I 305 (479)
+++|+.+|++|++.
T Consensus 184 ~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 184 KQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-07 Score=91.90 Aligned_cols=81 Identities=11% Similarity=0.086 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALE-REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 295 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le-~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeA 295 (479)
+.|+.+|.+.....+....+|..++.+... .|++++|+..|+++|++... + +..++++|..+..+|++++|
T Consensus 151 ~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-----~---~~~~~~~~~~~~~~g~~~~A 222 (308)
T 2ond_A 151 KSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-----I---PEYVLAYIDYLSHLNEDNNT 222 (308)
T ss_dssp HHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-----C---HHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----c---HHHHHHHHHHHHHCCCHHHH
Confidence 344445544433223345666666655433 79999999999999987532 2 57889999999999999999
Q ss_pred HHHHHHHHHH
Q 011692 296 IPYCQKAISV 305 (479)
Q Consensus 296 i~~~ekAL~I 305 (479)
+.+|++|+..
T Consensus 223 ~~~~~~al~~ 232 (308)
T 2ond_A 223 RVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 9999999863
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.70 E-value=4.3e-08 Score=80.41 Aligned_cols=69 Identities=16% Similarity=0.157 Sum_probs=61.1
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
+..+.+|+.||.+++.+|+|++|+..|+++|++... ...+|++||.+|...|++++|+.+|+++|.+..
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPD--------YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--------CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 445789999999999999999999999999998533 247999999999999999999999999998754
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.9e-08 Score=77.04 Aligned_cols=96 Identities=16% Similarity=0.144 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcc
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de 147 (479)
.++.+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+++..
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~~a~~~~~~-------------------------- 53 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--------DPEESKYWLMKGKALYNL-------------------------- 53 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHT--------------------------
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--------CcCCHHHHHHHHHHHHHc--------------------------
Confidence 4677899999999999999999999998 577788999999999875
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011692 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 227 (479)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~ 227 (479)
++++.|...|+.++.+.
T Consensus 54 -----------------------------------------------------------~~~~~A~~~~~~a~~~~---- 70 (112)
T 2kck_A 54 -----------------------------------------------------------ERYEEAVDCYNYVINVI---- 70 (112)
T ss_dssp -----------------------------------------------------------TCHHHHHHHHHHHHHTS----
T ss_pred -----------------------------------------------------------cCHHHHHHHHHHHHHhC----
Confidence 35677888887776542
Q ss_pred CCcch--HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHH
Q 011692 228 GDSME--KVDILSALAEVALER-EDIETSLSDYQKALTI 263 (479)
Q Consensus 228 ~~~~~--~A~v~~~LGev~le~-g~yeeAl~dy~kAL~I 263 (479)
+. ...++..||.++... |+|++|+.+|++++..
T Consensus 71 ---~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 71 ---EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp ---CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred ---cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 33 578999999999999 9999999999998765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-07 Score=92.53 Aligned_cols=86 Identities=21% Similarity=0.111 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|+.|...|+.|+.+ .+..+.+|.+||.++..+|+|++|+.+|++++.+. |.-+.+|++||.+|
T Consensus 18 g~~~~A~~~~~~al~~-------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 18 RKYPEAAACYGRAITR-------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--------GQSVKAHFFLGQCQ 82 (281)
T ss_dssp TCHHHHHHHHHHHHHH-------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--------TTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHH
Confidence 4677788888877765 23467899999999999999999999999999873 23358999999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
..+|+|++|+.+|++++.+..
T Consensus 83 ~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCc
Confidence 999999999999999999865
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=1.9e-07 Score=92.97 Aligned_cols=148 Identities=9% Similarity=0.011 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
-.-.+..+..+...|+|++|.++|..++.. +|... .+|.+|..+++.
T Consensus 102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--------~p~~~-~~~~~a~l~~~~------------------------ 148 (282)
T 4f3v_A 102 LAITMGFAACEAAQGNYADAMEALEAAPVA--------GSEHL-VAWMKAVVYGAA------------------------ 148 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--------TCHHH-HHHHHHHHHHHT------------------------
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCchH-HHHHHHHHHHHc------------------------
Confidence 344567788899999999999999988873 57777 889999877764
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|..+|+.+...
T Consensus 149 -------------------------------------------------------------~r~~dA~~~l~~a~~~--- 164 (282)
T 4f3v_A 149 -------------------------------------------------------------ERWTDVIDQVKSAGKW--- 164 (282)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHTTGGGC---
T ss_pred -------------------------------------------------------------CCHHHHHHHHHHhhcc---
Confidence 3455555555422110
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH-IAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~-iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
........+|+.||.++..+|+|++|+..|++++. ++..|. ..+++|++|+||..+|+.++|+.+|++++.
T Consensus 165 --~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~------g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 165 --PDKFLAGAAGVAHGVAAANLALFTEAERRLTEAND------SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp --SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred --CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc------CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 01112367999999999999999999999999872 333244 778999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhh
Q 011692 305 VCKSRVQRLLNEVKSL 320 (479)
Q Consensus 305 I~k~rl~~l~~~l~~~ 320 (479)
+... ......|...
T Consensus 237 ~~P~--~~~~~aL~~~ 250 (282)
T 4f3v_A 237 THPE--PKVAAALKDP 250 (282)
T ss_dssp HSCC--HHHHHHHHCT
T ss_pred cCCc--HHHHHHHhCC
Confidence 8665 5555555544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.64 E-value=2.2e-07 Score=92.54 Aligned_cols=176 Identities=9% Similarity=-0.039 Sum_probs=120.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHH-------HHHHHhhhhccCCcCCC---CC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQY-------GRALLYKAQEEADPLVS---VP 133 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~Y-------G~ALl~~ar~esdvLG~---~~ 133 (479)
+.+..+|..|.-+ .-+|+..|..+|.+|+++ +|.++++++.+ |.+|..+.+.. +.||. ..
T Consensus 5 ~~~~~~~~~~~~~-~~~d~~~A~~~F~~a~~~--------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~-~a~~~~~~~l 74 (282)
T 4f3v_A 5 DRLASLFESAVSM-LPMSEARSLDLFTEITNY--------DESACDAWIGRIRCGDTDRVTLFRAWYSR-RNFGQLSGSV 74 (282)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHTTCCCHHHHHHHHHTG-GGTTHHHHTT
T ss_pred HHHHHHHHHHhcc-cCCCHHHHHHHHHHHHHh--------ChhhhHHHHhHHHccCCcHHHHHHHHHHH-HHHHHHHHHh
Confidence 4578889999876 689999999999999999 99999999999 99999998874 34442 11
Q ss_pred CCcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHH
Q 011692 134 KKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAW 213 (479)
Q Consensus 134 ~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Aw 213 (479)
... ..... . .....+-. + +..---..-+++-+++
T Consensus 75 ~l~---------p~~l~-------------a----------~~~~~g~y-~-------------~~~~~v~~r~dl~Lay 108 (282)
T 4f3v_A 75 QIS---------MSTLN-------------A----------RIAIGGLY-G-------------DITYPVTSPLAITMGF 108 (282)
T ss_dssp TCC---------GGGGC-------------C----------EEECCTTT-C-------------CCEEECSSHHHHHHHH
T ss_pred cCC---------hhhhh-------------h----------hhccCCcc-c-------------ccccccCCHhHHHHHH
Confidence 000 00000 0 00000000 0 0000001123444444
Q ss_pred HH-------HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHH
Q 011692 214 KM-------LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH-IAELNFRICLC 285 (479)
Q Consensus 214 e~-------Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~-iAea~~~LG~a 285 (479)
-. |+.|+.+|.......+... +++.+|.++++.++|++|+.+|++++.+ .++. -+.+||+||.+
T Consensus 109 A~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~-------~d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 109 AACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW-------PDKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC-------SCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc-------CCcccHHHHHHHHHHH
Confidence 32 3667777776655556666 9999999999999999999999866433 1343 35799999999
Q ss_pred HHcCCChhHHHHHHHHHH
Q 011692 286 LEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 286 y~~~g~~eeAi~~~ekAL 303 (479)
|..+|++++|+.+|++++
T Consensus 181 l~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 181 AANLALFTEAERRLTEAN 198 (282)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHh
Confidence 999999999999999986
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-07 Score=79.43 Aligned_cols=90 Identities=12% Similarity=0.035 Sum_probs=72.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccCCCC
Q 011692 78 KESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGES 157 (479)
Q Consensus 78 ~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~~e~ 157 (479)
.+|+|++|+.+|.+|+++ +..+|..+.+|+.+|.+|+.+
T Consensus 2 ~~g~~~~A~~~~~~al~~-----~~~~p~~~~~~~~lg~~~~~~------------------------------------ 40 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS-----GLQGKDLAECYLGLGSTFRTL------------------------------------ 40 (117)
T ss_dssp -----CCCHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHT------------------------------------
T ss_pred CCCcHHHHHHHHHHHHHc-----CCCCccHHHHHHHHHHHHHHc------------------------------------
Confidence 478999999999999985 233599999999999999875
Q ss_pred CcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcchHHHHH
Q 011692 158 STASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDIL 237 (479)
Q Consensus 158 a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~ 237 (479)
++++.|...|+.++.++ +....+|
T Consensus 41 -------------------------------------------------~~~~~A~~~~~~al~~~-------p~~~~~~ 64 (117)
T 3k9i_A 41 -------------------------------------------------GEYRKAEAVLANGVKQF-------PNHQALR 64 (117)
T ss_dssp -------------------------------------------------TCHHHHHHHHHHHHHHC-------TTCHHHH
T ss_pred -------------------------------------------------CCHHHHHHHHHHHHHhC-------CCchHHH
Confidence 45778888888887663 3457899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 238 SALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 238 ~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
.+||.++..+|+|++|+..|+++|.+.
T Consensus 65 ~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 65 VFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999875
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.61 E-value=3.1e-07 Score=89.57 Aligned_cols=31 Identities=10% Similarity=0.118 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 83 GEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 83 eeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
.+|+.+|.+|+.+ +|..+.+|+.||..+...
T Consensus 33 ~~a~~~~~~al~~--------~p~~~~~w~~~~~~~~~~ 63 (308)
T 2ond_A 33 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQS 63 (308)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--------cCCCHHHHHHHHHHHHHh
Confidence 7899999999998 699999999999999865
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.59 E-value=1.5e-07 Score=86.95 Aligned_cols=86 Identities=9% Similarity=0.053 Sum_probs=72.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHH----------------HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSA----------------LAEVALEREDIETSLSDYQKALTILERMVEP 270 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~----------------LGev~le~g~yeeAl~dy~kAL~I~~~llg~ 270 (479)
++++.|...|+.++.+. +..+.+|.. ||.++..+|+|++|+..|+++|++...
T Consensus 18 g~~~~A~~~~~~al~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---- 86 (208)
T 3urz_A 18 GQNGQAVSYFRQTIALN-------IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPN---- 86 (208)
T ss_dssp TCHHHHHHHHHHHHHHC-------HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT----
T ss_pred CCHHHHHHHHHHHHHhC-------CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC----
Confidence 67888888887776653 345566666 999999999999999999999998432
Q ss_pred CChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 271 DSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 271 d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
-+.+|++||.+|...|++++|+.+|+++|.+-.
T Consensus 87 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P 119 (208)
T 3urz_A 87 ----NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA 119 (208)
T ss_dssp ----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred ----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 258999999999999999999999999998754
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-06 Score=77.91 Aligned_cols=100 Identities=20% Similarity=0.261 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHH-hhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALL-YKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl-~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
+..++.+|..++..|+|++|+.+|.+++++ .|....+|+.+|.+|+ ..
T Consensus 44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~l~~~~----------------------- 92 (177)
T 2e2e_A 44 SEQWALLGEYYLWQNDYSNSLLAYRQALQL--------RGENAELYAALATVLYYQA----------------------- 92 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------HCSCHHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhc-----------------------
Confidence 567899999999999999999999999998 4777889999999954 43
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChH--HHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDL--DLAWKMLDVARAI 222 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dl--e~Awe~Le~Ar~I 222 (479)
+++ +.|..+|+.++.+
T Consensus 93 --------------------------------------------------------------~~~~~~~A~~~~~~al~~ 110 (177)
T 2e2e_A 93 --------------------------------------------------------------SQHMTAQTRAMIDKALAL 110 (177)
T ss_dssp --------------------------------------------------------------TTCCCHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------CCcchHHHHHHHHHHHHh
Confidence 123 5677777777655
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
. +....+|..||.++...|+|++|+..|++++.+..
T Consensus 111 ~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 111 D-------SNEITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp C-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred C-------CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 2 34567899999999999999999999999998743
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.57 E-value=1.3e-07 Score=76.21 Aligned_cols=65 Identities=11% Similarity=0.110 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+.+|..+|.++...|+|++|+..|+++|.+.. ++ +.+|++||.+|..+|+|++|+.+|+++|.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-----~~---~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP-----QN---PVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-----TC---HHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-----CC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 478899999999999999999999999999833 22 588999999999999999999999999875
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.6e-07 Score=94.16 Aligned_cols=93 Identities=15% Similarity=0.026 Sum_probs=71.3
Q ss_pred ChHHHHHHHHHHHHHHHHHhcC--Cc--------chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWG--DS--------MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIA 276 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~--~~--------~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iA 276 (479)
++|+.|...|+.|+.+...... .. .....+|++||.+++.+++|++|+.+|+++|.+.. ..+
T Consensus 193 g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p--------~~~ 264 (338)
T 2if4_A 193 EKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEE--------KNP 264 (338)
T ss_dssp SCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCT--------TCH
T ss_pred CCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCH
Confidence 5677788888887766422210 00 00125999999999999999999999999998743 236
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
.+||+||.+|..+++|++|+.+|++++.+..
T Consensus 265 ~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p 295 (338)
T 2if4_A 265 KALFRRGKAKAELGQMDSARDDFRKAQKYAP 295 (338)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 8999999999999999999999999987643
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.53 E-value=2.8e-08 Score=80.30 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..++.+|..++..|+|++|+.+|.+|+++ .|..+.+|+++|.+|+.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~----------------------- 51 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITA--------QPQNPVGYSNKAMALIKL----------------------- 51 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT-----------------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHh-----------------------
Confidence 4678899999999999999999999999998 788899999999999875
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++++.|++.|+.++.+..
T Consensus 52 --------------------------------------------------------------g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 52 --------------------------------------------------------------GEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHTSCS
T ss_pred --------------------------------------------------------------cCHHHHHHHHHHHHHhCC
Confidence 356778888877775532
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQK 259 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~k 259 (479)
... .......+|..+|.++..+|+++.|+..|++
T Consensus 70 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 70 TAE-HVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp STT-SHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred Ccc-HHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 211 1122488999999999999999888776653
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-06 Score=90.21 Aligned_cols=166 Identities=16% Similarity=0.114 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 66 ADELMEKGTNALK----ESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 66 A~~L~~~G~~~~~----~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
+..++.+|..++. .++|++|+.+|.+|++. | .+.+++.+|..++.- .+|.++.
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~-----~-----~~~a~~~Lg~~y~~g----~g~~~~~--------- 95 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ-----G-----YTPAEYVLGLRYMNG----EGVPQDY--------- 95 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-----T-----CHHHHHHHHHHHHHT----SSSCCCH---------
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-----C-----CHHHHHHHHHHHHcC----CCCCCCH---------
Confidence 6788999999998 89999999999999874 2 367999999988762 0111110
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
+....-.. ...+.+....+...+. . -..+.....+++.|..+|+.|..
T Consensus 96 ----~~A~~~~~-----------~a~~~~~~~a~~~Lg~-~----------------y~~g~g~~~~~~~A~~~~~~a~~ 143 (490)
T 2xm6_A 96 ----AQAVIWYK-----------KAALKGLPQAQQNLGV-M----------------YHEGNGVKVDKAESVKWFRLAAE 143 (490)
T ss_dssp ----HHHHHHHH-----------HHHHTTCHHHHHHHHH-H----------------HHHTSSSCCCHHHHHHHHHHHHH
T ss_pred ----HHHHHHHH-----------HHHHCCCHHHHHHHHH-H----------------HHcCCCCCCCHHHHHHHHHHHHH
Confidence 00000000 0000000000000000 0 00000113577788877777643
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc----CCChh
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALE----REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI----GSKPQ 293 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le----~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~----~g~~e 293 (479)
. ..+.++..||.+|.. .+++++|+..|+++++. .+ +.++++||.+|.. .++++
T Consensus 144 ~---------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~-------~~---~~a~~~Lg~~y~~g~g~~~~~~ 204 (490)
T 2xm6_A 144 Q---------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ-------GN---VWSCNQLGYMYSRGLGVERNDA 204 (490)
T ss_dssp T---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHH
T ss_pred C---------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHhcCCCCCcCHH
Confidence 2 347899999999998 88999999999999874 12 5899999999998 89999
Q ss_pred HHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISV 305 (479)
Q Consensus 294 eAi~~~ekAL~I 305 (479)
+|+.+|++|++.
T Consensus 205 ~A~~~~~~a~~~ 216 (490)
T 2xm6_A 205 ISAQWYRKSATS 216 (490)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
Confidence 999999999875
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-06 Score=90.42 Aligned_cols=80 Identities=13% Similarity=0.005 Sum_probs=66.8
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALE----REDIETSLSDYQKALTILERMVEPDSRHIAELNFRIC 283 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le----~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG 283 (479)
+++.|.++|+.|... ....++++||.+|.. .+++++|+..|++|++. .+ +.++++||
T Consensus 346 ~~~~A~~~~~~a~~~---------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-------~~---~~a~~~Lg 406 (490)
T 2xm6_A 346 EHKKAVEWFRKAAAK---------GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-------GL---SAAQVQLG 406 (490)
T ss_dssp HHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHH
T ss_pred cHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-------CC---HHHHHHHH
Confidence 566666666666532 347899999999999 89999999999999873 12 68999999
Q ss_pred HHHHc----CCChhHHHHHHHHHHHHH
Q 011692 284 LCLEI----GSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 284 ~ay~~----~g~~eeAi~~~ekAL~I~ 306 (479)
.+|.. .+++++|+.+|++|++.-
T Consensus 407 ~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 407 EIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 99998 899999999999999875
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-06 Score=70.99 Aligned_cols=85 Identities=25% Similarity=0.275 Sum_probs=69.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|+.+|+.+..+. +....++..+|.++...++|++|+..|++++.+. +. ...+++++|.+|
T Consensus 15 ~~~~~A~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~---~~~~~~~l~~~~ 79 (136)
T 2fo7_A 15 GDYDEAIEYYQKALELD-------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PR---SAEAWYNLGNAY 79 (136)
T ss_dssp TCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----TT---CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcC-------CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-----CC---chHHHHHHHHHH
Confidence 45777887777776542 2346789999999999999999999999998763 22 257899999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
...+++++|+.+|++++.+.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~ 99 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELD 99 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhC
Confidence 99999999999999998753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.50 E-value=4.9e-07 Score=70.37 Aligned_cols=67 Identities=24% Similarity=0.276 Sum_probs=59.9
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
+..+.+|..||.++...++|++|+..|++++.+.. + ...++++||.+|...+++++|+.+|++++.+
T Consensus 6 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-----~---~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 6 GNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-----N---NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----T---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-----C---CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678999999999999999999999999998732 2 2578999999999999999999999999976
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.40 E-value=6.1e-07 Score=94.44 Aligned_cols=86 Identities=15% Similarity=0.074 Sum_probs=76.5
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLC 285 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a 285 (479)
.++++.|.+.|+.|+.+ .+..+.+|.+||.++..+|+|++|+.+|++||++. +..+.+|++||.+
T Consensus 19 ~g~~~~A~~~~~~Al~~-------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--------p~~~~~~~~lg~~ 83 (477)
T 1wao_1 19 AKDYENAIKFYSQAIEL-------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD--------KKYIKGYYRRAAS 83 (477)
T ss_dssp TTCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC--------TTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHh-------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHH
Confidence 47899999999988876 24468999999999999999999999999999883 3447899999999
Q ss_pred HHcCCChhHHHHHHHHHHHHH
Q 011692 286 LEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 286 y~~~g~~eeAi~~~ekAL~I~ 306 (479)
|..+|+|++|+.+|++|+++.
T Consensus 84 ~~~~g~~~eA~~~~~~al~~~ 104 (477)
T 1wao_1 84 NMALGKFRAALRDYETVVKVK 104 (477)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHcCCHHHHHHHHHHHHHhC
Confidence 999999999999999999874
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.1e-06 Score=70.83 Aligned_cols=54 Identities=13% Similarity=0.057 Sum_probs=45.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM 267 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~l 267 (479)
++++.|..+|+.++.+. +....+|..||.++..+|+|++|+..|++++.+....
T Consensus 33 g~~~~A~~~~~~al~~~-------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 86 (115)
T 2kat_A 33 EQFDAALPHLRAALDFD-------PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSR 86 (115)
T ss_dssp TCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHC-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 35777888888887652 3457899999999999999999999999999998754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.29 E-value=2.8e-06 Score=88.22 Aligned_cols=79 Identities=18% Similarity=0.189 Sum_probs=61.1
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERE-----DIETSLSDYQKALTILERMVEPDSRHIAELNF 280 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g-----~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~ 280 (479)
.++++.|+.+|+.|.. ...+.++++||.+|. .| ++++|+..|++|+ +.+ +.+++
T Consensus 264 ~~d~~~A~~~~~~Aa~---------~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--------~g~---~~A~~ 322 (452)
T 3e4b_A 264 LGDVEQMMKYLDNGRA---------ADQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--------GRE---VAADY 322 (452)
T ss_dssp GCCHHHHHHHHHHHHH---------TTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--------TTC---HHHHH
T ss_pred CCCHHHHHHHHHHHHH---------CCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--------CCC---HHHHH
Confidence 3577777777776652 135788999999998 55 9999999998887 122 58999
Q ss_pred HHHHHHHc----CCChhHHHHHHHHHHHH
Q 011692 281 RICLCLEI----GSKPQEAIPYCQKAISV 305 (479)
Q Consensus 281 ~LG~ay~~----~g~~eeAi~~~ekAL~I 305 (479)
+||.+|.. ..++++|+.+|++|++.
T Consensus 323 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 351 (452)
T 3e4b_A 323 YLGQIYRRGYLGKVYPQKALDHLLTAARN 351 (452)
T ss_dssp HHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence 99999987 34899999999998863
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=4.1e-06 Score=73.04 Aligned_cols=75 Identities=13% Similarity=0.112 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 212 AWKMLDVARAIAEKHWGDSMEKVDILSALAEVALE----REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 212 Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le----~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
|+++|++|... ..+.++++||.+|.. ..++++|+..|++|.+. . .+.++++||.+|.
T Consensus 44 A~~~~~~Aa~~---------g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g---~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 44 LFQYLSKACEL---------NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-------N---DQDGCLILGYKQY 104 (138)
T ss_dssp HHHHHHHHHHT---------TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC---------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC-------C---CHHHHHHHHHHHH
Confidence 77777776532 357899999999999 89999999999999864 1 2689999999999
Q ss_pred c----CCChhHHHHHHHHHHHH
Q 011692 288 I----GSKPQEAIPYCQKAISV 305 (479)
Q Consensus 288 ~----~g~~eeAi~~~ekAL~I 305 (479)
. ..++++|+.+|++|++.
T Consensus 105 ~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 105 AGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HTSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHHHC
Confidence 9 89999999999999864
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.1e-05 Score=82.34 Aligned_cols=83 Identities=11% Similarity=0.103 Sum_probs=57.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEV-ALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev-~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+++.|..+|+.|+. ..+....+|...+.+ +...|++++|+..|+++|++.. ++ +.++.+++..+
T Consensus 371 ~~~~A~~~~~~Al~-------~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-----~~---~~~~~~~~~~~ 435 (530)
T 2ooe_A 371 GIKSGRMIFKKARE-------DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-----DI---PEYVLAYIDYL 435 (530)
T ss_dssp HHHHHHHHHHHHHT-------CTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-----TC---HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh-------ccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-----CC---HHHHHHHHHHH
Confidence 34445555555543 222234455555554 3358999999999999998753 33 47788899999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
...|++++|...|++|+..
T Consensus 436 ~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 436 SHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp TTTTCHHHHHHHHHHHHHS
T ss_pred HhCCCHhhHHHHHHHHHhc
Confidence 9999999999999998863
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.20 E-value=8.3e-06 Score=84.69 Aligned_cols=78 Identities=17% Similarity=0.095 Sum_probs=56.3
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALE----REDIETSLSDYQKALTILERMVEPDSRHIAELNFRIC 283 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le----~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG 283 (479)
|+..|+.+|++|. +..+.++++||.+|.. ..++++|+..|++|.+. .+ +.++++||
T Consensus 302 d~~~A~~~~~~Aa----------~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-------g~---~~A~~~Lg 361 (452)
T 3e4b_A 302 DAKAAEAHFEKAV----------GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-------GQ---NSADFAIA 361 (452)
T ss_dssp CHHHHHHHHHTTT----------TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-------TC---TTHHHHHH
T ss_pred CHHHHHHHHHHHh----------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-------Ch---HHHHHHHH
Confidence 5555555555443 2457888899988887 34888888888888752 22 57888999
Q ss_pred HHHHc----CCChhHHHHHHHHHHHH
Q 011692 284 LCLEI----GSKPQEAIPYCQKAISV 305 (479)
Q Consensus 284 ~ay~~----~g~~eeAi~~~ekAL~I 305 (479)
.+|.. ..++.+|+.+|++|.+.
T Consensus 362 ~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 362 QLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp HHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred HHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 99885 45788899888888753
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=98.17 E-value=8.6e-06 Score=85.22 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 011692 83 GEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLY 120 (479)
Q Consensus 83 eeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~ 120 (479)
..|+.+|.+|+.+ .|....+|+.||..|..
T Consensus 255 ~~a~~~y~~al~~--------~p~~~~~w~~~~~~~~~ 284 (530)
T 2ooe_A 255 KRVMFAYEQCLLV--------LGHHPDIWYEAAQYLEQ 284 (530)
T ss_dssp HHHHHHHHHHHHH--------HTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHH
Confidence 4788999999998 58888999999999886
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.17 E-value=4.3e-05 Score=78.84 Aligned_cols=141 Identities=12% Similarity=0.022 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCC
Q 011692 66 ADELMEKGTNALKES---DYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQG 142 (479)
Q Consensus 66 A~~L~~~G~~~~~~g---dyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~ 142 (479)
|-.|+-+|..++..+ ++.+|+++|.+|+++ .|+.+.+|-.++.+++...... +.
T Consensus 196 Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--------DP~~a~A~A~la~a~~~~~~~~-------~~-------- 252 (372)
T 3ly7_A 196 LLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--------SPEFTYARAEKALVDIVRHSQH-------PL-------- 252 (372)
T ss_dssp GHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHS-------CC--------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHhccC-------CC--------
Confidence 667788888877765 458999999999999 8999999999888887431110 00
Q ss_pred CCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHH
Q 011692 143 SDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAI 222 (479)
Q Consensus 143 ~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~I 222 (479)
.. ..++.+..++..
T Consensus 253 ----------------------------------------------------------------~~--~~~~~l~~a~~a 266 (372)
T 3ly7_A 253 ----------------------------------------------------------------DE--KQLAALNTEIDN 266 (372)
T ss_dssp ----------------------------------------------------------------CH--HHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------ch--hhHHHHHHHHHH
Confidence 00 011222333332
Q ss_pred HHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 223 AEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 223 yek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
.. .....+..+.+|..+|.+++-.|++++|+..+++||.+. + + +.+|..+|.+|.+.|++++|+++|++|
T Consensus 267 ~~-a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-----~-s---~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 267 IV-TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-----M-S---WLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp HH-TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----C-C---HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-----C-C---HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 21 222235578899999999999999999999999999994 1 2 578899999999999999999999999
Q ss_pred HHH
Q 011692 303 ISV 305 (479)
Q Consensus 303 L~I 305 (479)
+.+
T Consensus 337 lrL 339 (372)
T 3ly7_A 337 FNL 339 (372)
T ss_dssp HHH
T ss_pred Hhc
Confidence 987
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.5e-06 Score=67.29 Aligned_cols=61 Identities=16% Similarity=0.113 Sum_probs=54.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH-HHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 237 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAE-LNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 237 ~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAe-a~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
+..+|.+++..|+|++|+..|++++.+.. ++ +. +|++||.+|..+|++++|+.+|++++.+
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p-----~~---~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEP-----VG---KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCS-----ST---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC-----Cc---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 35789999999999999999999998732 22 46 9999999999999999999999999976
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.16 E-value=9.8e-06 Score=67.38 Aligned_cols=72 Identities=13% Similarity=0.020 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
+.-++.||.+++..++|.+|+.-|++||.....-.. .....+.+|++||.||..+|+++.|+.+|++++.+.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~-~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI-STIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-CSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC-CcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 455679999999999999999999999988753321 123467999999999999999999999999999763
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.14 E-value=3e-05 Score=59.97 Aligned_cols=49 Identities=31% Similarity=0.497 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
.+..++.+|..++..|+|++|+.+|.+++++ .|....+|+++|.+++..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l~~~~~~~ 56 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--------DPNNAEAWYNLGNAYYKQ 56 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHH
Confidence 3667889999999999999999999999997 677889999999999875
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-05 Score=78.34 Aligned_cols=91 Identities=20% Similarity=0.138 Sum_probs=63.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----------------------
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTI----------------------- 263 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I----------------------- 263 (479)
++++.|...|+.++.+ .+..+.++..||.+++.+|+|++|+..|++++.+
T Consensus 131 g~~~~A~~~~~~al~~-------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~ 203 (287)
T 3qou_A 131 SNYTDALPLLXDAWQL-------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTP 203 (287)
T ss_dssp TCHHHHHHHHHHHHHH-------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCH
T ss_pred CCHHHHHHHHHHHHHh-------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCc
Confidence 3455566666555543 2345677888888888888888888777776431
Q ss_pred ----HHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 264 ----LERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 264 ----~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
+++.+. .+|.-..++++||.+|...|++++|+.+|+++|..
T Consensus 204 a~~~l~~al~-~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 204 EIQQLQQQVA-ENPEDAALATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp HHHHHHHHHH-HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHh-cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 111110 13334689999999999999999999999999975
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=2.9e-05 Score=91.46 Aligned_cols=84 Identities=17% Similarity=0.098 Sum_probs=64.0
Q ss_pred CcChHHHHHHHHHHHHHHH-------------HHhcC--------CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 011692 205 DESDLDLAWKMLDVARAIA-------------EKHWG--------DSMEKVDILSALAEVALEREDIETSLSDYQKALTI 263 (479)
Q Consensus 205 d~~dle~Awe~Le~Ar~Iy-------------ek~~~--------~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I 263 (479)
..++|+.|.++|.+||.+- .+... ..+..+ .|..+|+.+...|+|++|+.+|.+|
T Consensus 1146 ~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~a-d~~~iGd~le~eg~YeeA~~~Y~kA--- 1221 (1630)
T 1xi4_A 1146 TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNA-HIQQVGDRCYDEKMYDAAKLLYNNV--- 1221 (1630)
T ss_pred HcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHH-HHHHHHHHHHhcCCHHHHHHHHHhh---
Confidence 3467888888888887332 22100 012233 4557999999999999999999985
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 264 LERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 264 ~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
..|.+|+.+|.++|+|++|+++|++|...
T Consensus 1222 -------------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1222 -------------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred -------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 57889999999999999999999998665
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.8e-06 Score=74.86 Aligned_cols=89 Identities=13% Similarity=0.085 Sum_probs=65.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--------------HhcCC------------
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE--------------RMVEP------------ 270 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~--------------~llg~------------ 270 (479)
+.|+.+|++.+...|....+|..||.+++..|+|++|+..|++++.+.. .....
T Consensus 23 ~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~ 102 (176)
T 2r5s_A 23 AQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELA 102 (176)
T ss_dssp HHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHH
Confidence 3444445444433456788999999999999999999999988754310 00111
Q ss_pred CChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 271 DSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 271 d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
-+|.-..+|++||.+|...|++++|+.+|+++|.+
T Consensus 103 ~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 103 ANPDNFELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 13344689999999999999999999999998865
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.93 E-value=8.8e-05 Score=60.32 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
+..++.+|..++.+|+|++|+.+|.+++++ .|....+|+++|.+|+.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~ 54 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET--------DPDYVGTYYHLGKLYERL 54 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHc
Confidence 457889999999999999999999999998 788889999999999875
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.93 E-value=2.5e-05 Score=62.13 Aligned_cols=45 Identities=18% Similarity=0.223 Sum_probs=40.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHH-HHHHHHHHHHhh
Q 011692 69 LMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVN-AYYQYGRALLYK 121 (479)
Q Consensus 69 L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~-~y~~YG~ALl~~ 121 (479)
++.+|..++..|+|++|+.+|.+++++ +|.... +|+++|.+++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~~lg~~~~~~ 48 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQT--------EPVGKDEAYYLMGNAYRKL 48 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHH--------CSSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHHc
Confidence 467899999999999999999999997 788888 999999999875
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.91 E-value=6.2e-05 Score=68.46 Aligned_cols=87 Identities=10% Similarity=-0.006 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHcC
Q 011692 214 KMLDVARAIAEKHWGDSMEKVDILSALAEVALERE---DIETSLSDYQKALTILERMVEPDSR-HIAELNFRICLCLEIG 289 (479)
Q Consensus 214 e~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g---~yeeAl~dy~kAL~I~~~llg~d~r-~iAea~~~LG~ay~~~ 289 (479)
+.+..++..|.+.....+...++.+++|..++..+ ++.++|..|+..++.- +| .-.+++|+||++|.+.
T Consensus 12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-------~p~~~rd~lY~LAv~~~kl 84 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-------SKEEQRDYVFYLAVGNYRL 84 (152)
T ss_dssp HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-------CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-------CccchHHHHHHHHHHHHHc
Confidence 34566666666554323356899999999999988 6778888887777642 23 3469999999999999
Q ss_pred CChhHHHHHHHHHHHHHH
Q 011692 290 SKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 290 g~~eeAi~~~ekAL~I~k 307 (479)
++|++|+.||+++|++-.
T Consensus 85 ~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp SCHHHHHHHHHHHHHHCT
T ss_pred cCHHHHHHHHHHHHhcCC
Confidence 999999999999998744
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=0.00031 Score=70.28 Aligned_cols=88 Identities=11% Similarity=0.088 Sum_probs=70.9
Q ss_pred cChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALER-----EDIETSLSDYQKALTILERMVEPDSRHIAELNF 280 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~-----g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~ 280 (479)
...+..|..++++|+.|-. ...-..+|..||.+|... |+.++|..+|++||+|-.... ..++|
T Consensus 176 l~~l~~A~a~lerAleLDP-----~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~-------id~~v 243 (301)
T 3u64_A 176 PDTVHAAVMMLERACDLWP-----SYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHD-------PDHHI 243 (301)
T ss_dssp HHHHHHHHHHHHHHHHHCT-----THHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTC-------SHHHH
T ss_pred HHhHHHHHHHHHHHHHhCC-----CcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCC-------chHHH
Confidence 3567777777887776632 223567999999999995 999999999999999965321 38899
Q ss_pred HHHHHHHcC-CChhHHHHHHHHHHHH
Q 011692 281 RICLCLEIG-SKPQEAIPYCQKAISV 305 (479)
Q Consensus 281 ~LG~ay~~~-g~~eeAi~~~ekAL~I 305 (479)
..|..|... +++++|..++++||.+
T Consensus 244 ~YA~~l~~~~gd~~~a~~~L~kAL~a 269 (301)
T 3u64_A 244 TYADALCIPLNNRAGFDEALDRALAI 269 (301)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcC
Confidence 999999884 9999999999999863
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00027 Score=83.41 Aligned_cols=87 Identities=7% Similarity=-0.094 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-------c-----CC--------CChhHHHHHHHHHHHHHcCCCh
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERM-------V-----EP--------DSRHIAELNFRICLCLEIGSKP 292 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~l-------l-----g~--------d~r~iAea~~~LG~ay~~~g~~ 292 (479)
-.+.|..+|.++...|+|++|+.+|..|+++.+.. + +. ..+.. ..++++|.+|...|+|
T Consensus 1133 D~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~-ad~~~iGd~le~eg~Y 1211 (1630)
T 1xi4_A 1133 DPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNN-AHIQQVGDRCYDEKMY 1211 (1630)
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCH-HHHHHHHHHHHhcCCH
Confidence 36688889999999999999999998887554210 0 00 12222 3567899999999999
Q ss_pred hHHHHHHHHHHHHHH-----HHHHHHHHHHhhh
Q 011692 293 QEAIPYCQKAISVCK-----SRVQRLLNEVKSL 320 (479)
Q Consensus 293 eeAi~~~ekAL~I~k-----~rl~~l~~~l~~~ 320 (479)
++|+.+|++|-.-.+ -+++..+.+++..
T Consensus 1212 eeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaa 1244 (1630)
T 1xi4_A 1212 DAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGA 1244 (1630)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHH
Confidence 999999999843322 2334455555544
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00013 Score=78.69 Aligned_cols=149 Identities=11% Similarity=0.061 Sum_probs=114.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcC
Q 011692 59 REKTVEFADELMEKGTNALKESDYG-EAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEG 137 (479)
Q Consensus 59 ~~~~l~~A~~L~~~G~~~~~~gdye-eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~ 137 (479)
+.+.+..-..++.........++|. +|+++|.+++++ +|+...+|++-|.+|..+++...
T Consensus 21 ~~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~--------nP~~~taW~~R~~~l~~l~~~~~----------- 81 (567)
T 1dce_A 21 REQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEKS----------- 81 (567)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHTTSC-----------
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHhcccccc-----------
Confidence 3444555566677777777788775 669999999999 89999999999999998732100
Q ss_pred CCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHH
Q 011692 138 DSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLD 217 (479)
Q Consensus 138 e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le 217 (479)
.+.....++.|++.++
T Consensus 82 ----------------------------------------------------------------~~~~~~~~~~eL~~~~ 97 (567)
T 1dce_A 82 ----------------------------------------------------------------PEESAALVKAELGFLE 97 (567)
T ss_dssp ----------------------------------------------------------------HHHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------hhhhhhhHHHHHHHHH
Confidence 0011235666666666
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCC-ChhH
Q 011692 218 VARAIAEKHWGDSMEKVDILSALAEVALERE--DIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS-KPQE 294 (479)
Q Consensus 218 ~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g--~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g-~~ee 294 (479)
.++.+ .++-..+|...+.+....+ +|++|+.+|.++|++..+.+ .+++..+.++...+ .+++
T Consensus 98 ~~l~~-------~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~--------~aW~~R~~~l~~l~~~~~~ 162 (567)
T 1dce_A 98 SCLRV-------NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF--------HCWDYRRFVAAQAAVAPAE 162 (567)
T ss_dssp HHHHH-------CTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHHTCCCHHH
T ss_pred HHHHh-------CCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc--------cHHHHHHHHHHHcCCChHH
Confidence 66543 4567889999999999999 77999999999999865554 88999999999999 8999
Q ss_pred HHHHHHHHHHH
Q 011692 295 AIPYCQKAISV 305 (479)
Q Consensus 295 Ai~~~ekAL~I 305 (479)
+++++.++|++
T Consensus 163 el~~~~~~I~~ 173 (567)
T 1dce_A 163 ELAFTDSLITR 173 (567)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHHHHHH
Confidence 99998887654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00044 Score=69.16 Aligned_cols=135 Identities=8% Similarity=-0.056 Sum_probs=107.7
Q ss_pred HHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDY-GEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdy-eeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
-..++..-...+..+.| ++|+.++.++|.+ +|+...+++.-|.+|..++.
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~--------nP~~~taWn~R~~~L~~l~~--------------------- 82 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINE--------LASHYTIWIYRFNILKNLPN--------------------- 82 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCTT---------------------
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CcHHHHHHHHHHHHHHHccc---------------------
Confidence 34666677777788888 5899999999999 89999999999999976510
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
.+++.++++++.++.+
T Consensus 83 --------------------------------------------------------------~~~~eeL~~~~~~L~~-- 98 (306)
T 3dra_A 83 --------------------------------------------------------------RNLYDELDWCEEIALD-- 98 (306)
T ss_dssp --------------------------------------------------------------SCHHHHHHHHHHHHHH--
T ss_pred --------------------------------------------------------------ccHHHHHHHHHHHHHH--
Confidence 1466677777766644
Q ss_pred HhcCCcchHHHHHHHHHHHH----Hhc---CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChh--HH
Q 011692 225 KHWGDSMEKVDILSALAEVA----LER---EDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ--EA 295 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~----le~---g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~e--eA 295 (479)
.++...+++..+.+. ... +++++++..+.++|.+..+.+ .+++..+.++...++++ ++
T Consensus 99 -----nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny--------~aW~~R~~vl~~l~~~~~~~E 165 (306)
T 3dra_A 99 -----NEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH--------HVWSYRKWLVDTFDLHNDAKE 165 (306)
T ss_dssp -----CTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHHTTCTTCHHH
T ss_pred -----CcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHhcccChHHH
Confidence 234456777777777 555 799999999999999866654 88999999999999999 99
Q ss_pred HHHHHHHHHHH
Q 011692 296 IPYCQKAISVC 306 (479)
Q Consensus 296 i~~~ekAL~I~ 306 (479)
++++.++|++-
T Consensus 166 L~~~~~~i~~d 176 (306)
T 3dra_A 166 LSFVDKVIDTD 176 (306)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999998753
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00035 Score=57.80 Aligned_cols=69 Identities=17% Similarity=0.178 Sum_probs=55.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRIC 283 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG 283 (479)
++|..|..+|+.|+..+..........+++|..||.++..+|+|+.|+..|+++|.+. |+|+ .+++|++
T Consensus 19 ~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-----P~~~---~~~~n~~ 87 (104)
T 2v5f_A 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-----PEHQ---RANGNLK 87 (104)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTCH---HHHHHHH
T ss_pred cchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-----CCCH---HHHhhHH
Confidence 5788999999999988865532345688999999999999999999999999999874 3443 3456664
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00024 Score=76.71 Aligned_cols=135 Identities=7% Similarity=-0.128 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESD----------YGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKK 135 (479)
Q Consensus 66 A~~L~~~G~~~~~~gd----------yeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~ 135 (479)
...+..+|..+...++ |++|+++|.+++++ +|.+..+|++-|.+|...+ .
T Consensus 63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--------~pK~y~aW~hR~w~l~~l~--------~---- 122 (567)
T 1dce_A 63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLP--------E---- 122 (567)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTCS--------S----
T ss_pred HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcc--------c----
Confidence 4567788888888888 99999999999998 8999999999999987641 0
Q ss_pred cCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHH
Q 011692 136 EGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKM 215 (479)
Q Consensus 136 ~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~ 215 (479)
.+++.|++.
T Consensus 123 -----------------------------------------------------------------------~~~~~el~~ 131 (567)
T 1dce_A 123 -----------------------------------------------------------------------PNWARELEL 131 (567)
T ss_dssp -----------------------------------------------------------------------CCHHHHHHH
T ss_pred -----------------------------------------------------------------------ccHHHHHHH
Confidence 245667777
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC-----
Q 011692 216 LDVARAIAEKHWGDSMEKVDILSALAEVALERE-DIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG----- 289 (479)
Q Consensus 216 Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g-~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~----- 289 (479)
++.+..+ .++-..+|+..|.+....+ .|++++.++.+++++... -..+++++|.++...
T Consensus 132 ~~k~l~~-------d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~--------n~saW~~r~~ll~~l~~~~~ 196 (567)
T 1dce_A 132 CARFLEA-------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS--------NYSSWHYRSCLLPQLHPQPD 196 (567)
T ss_dssp HHHHHHH-------CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC--------CHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHhh-------ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC--------CccHHHHHHHHHHhhccccc
Confidence 7777665 3445778999999999999 999999999998876322 248888999988774
Q ss_pred ---------CChhHHHHHHHHHHHHH
Q 011692 290 ---------SKPQEAIPYCQKAISVC 306 (479)
Q Consensus 290 ---------g~~eeAi~~~ekAL~I~ 306 (479)
+++++|+++|.+||.+.
T Consensus 197 ~~~~~~~~~~~~~eel~~~~~ai~~~ 222 (567)
T 1dce_A 197 SGPQGRLPENVLLKELELVQNAFFTD 222 (567)
T ss_dssp SSSCCSSCHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccHHHHHHHHHHHHHHHhhC
Confidence 45789999999999765
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=97.56 E-value=2.8e-05 Score=82.05 Aligned_cols=55 Identities=15% Similarity=0.056 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 235 DILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 235 ~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+|..+|+.+.+.|+|++|+.+|.++ ..|.+|+.||.++|+|++|++.|++|..+
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a----------------~n~~~LA~~L~~Lg~yq~AVea~~KA~~~ 177 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV----------------SNFGRLASTLVHLGEYQAAVDGARKANST 177 (449)
T ss_dssp --------------CTTTHHHHHHHT----------------TCHHHHHHHHHTTTCHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh----------------hhHHHHHHHHHHhccHHHHHHHHHHcCCc
Confidence 48999999999999999999999976 46889999999999999999999999544
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0006 Score=62.81 Aligned_cols=95 Identities=12% Similarity=0.183 Sum_probs=72.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC------------
Q 011692 207 SDLDLAWKMLDVARAIAEKHWG--DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDS------------ 272 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~--~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~------------ 272 (479)
+-|+.|.-...+++.+.....+ .....++++..+|+.++..++|.+|+..|++||.+++.+.-..+
T Consensus 34 ~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p 113 (167)
T 3ffl_A 34 GLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTP 113 (167)
T ss_dssp TCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----------------
T ss_pred hhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCc
Confidence 4567777667777777655433 23457899999999999999999999999999999996542211
Q ss_pred -----hhHHHHHHHHHHHHHcCCChhHHHHHHHH
Q 011692 273 -----RHIAELNFRICLCLEIGSKPQEAIPYCQK 301 (479)
Q Consensus 273 -----r~iAea~~~LG~ay~~~g~~eeAi~~~ek 301 (479)
..-++.-|+|+.||...+++++||..++.
T Consensus 114 ~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 114 QSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ---CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred ccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 11247889999999999999999887643
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.002 Score=64.31 Aligned_cols=140 Identities=8% Similarity=-0.087 Sum_probs=111.1
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKES--DYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~g--dyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
......+|..+...+ +|++|+.++.+++.+ +|++..++++-|.+|.+.... ++.
T Consensus 67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~--------nPk~y~aW~~R~~iL~~~~~~----l~~------------ 122 (306)
T 3dra_A 67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALD--------NEKNYQIWNYRQLIIGQIMEL----NNN------------ 122 (306)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH--------CTTCCHHHHHHHHHHHHHHHH----TTT------------
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHHH--------CcccHHHHHHHHHHHHHHHHh----ccc------------
Confidence 445678999999999 999999999999998 899999999999999554211 000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
..+++.++++++.++.+
T Consensus 123 --------------------------------------------------------------~~~~~~EL~~~~~~l~~- 139 (306)
T 3dra_A 123 --------------------------------------------------------------DFDPYREFDILEAMLSS- 139 (306)
T ss_dssp --------------------------------------------------------------CCCTHHHHHHHHHHHHH-
T ss_pred --------------------------------------------------------------cCCHHHHHHHHHHHHHh-
Confidence 02345566666666643
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCC------hhHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIE--TSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK------PQEA 295 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~ye--eAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~------~eeA 295 (479)
.++-..+++..+-+....++|+ +++..+.++|++....+ .++++.+.++...++ ++++
T Consensus 140 ------~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~--------sAW~~R~~ll~~l~~~~~~~~~~eE 205 (306)
T 3dra_A 140 ------DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNN--------SAWSHRFFLLFSKKHLATDNTIDEE 205 (306)
T ss_dssp ------CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred ------CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHhccccchhhhHHHH
Confidence 3455778999999999999999 99999999998755443 788999999999887 8999
Q ss_pred HHHHHHHHHHH
Q 011692 296 IPYCQKAISVC 306 (479)
Q Consensus 296 i~~~ekAL~I~ 306 (479)
++++.++|.+.
T Consensus 206 l~~~~~aI~~~ 216 (306)
T 3dra_A 206 LNYVKDKIVKC 216 (306)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 99999999764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0027 Score=64.33 Aligned_cols=141 Identities=11% Similarity=0.043 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 67 DELMEKGTNALKESDYG-EAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdye-eAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
..+...-......|+|. +|++++.+++.+ +|++..+++.-|.+|..+++.. + +
T Consensus 30 ~~~~~~~~~~~~~~e~s~eaL~~t~~~L~~--------nP~~ytaWn~Rr~iL~~l~~~~----~--~------------ 83 (331)
T 3dss_A 30 QSATQAVFQKRQAGELDESVLELTSQILGA--------NPDFATLWNCRREVLQHLETEK----S--P------------ 83 (331)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHHHTT--------CTTCHHHHHHHHHHHHHHHHHS----C--H------------
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHhcccc----c--c------------
Confidence 34444455556788888 799999999998 8999999999999998874320 0 0
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++....|+.++.+++.++.+
T Consensus 84 ---------------------------------------------------------~~~~~~l~~EL~~~~~~L~~--- 103 (331)
T 3dss_A 84 ---------------------------------------------------------EESAALVKAELGFLESCLRV--- 103 (331)
T ss_dssp ---------------------------------------------------------HHHHHHHHHHHHHHHHHHHH---
T ss_pred ---------------------------------------------------------hhhhHHHHHHHHHHHHHHHh---
Confidence 00113455666666655543
Q ss_pred hcCCcchHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCC-hhHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALERE--DIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK-PQEAIPYCQKA 302 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g--~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~-~eeAi~~~ekA 302 (479)
.++...+++..+.+....+ +|++++.++.++|.+..+.+ .+++..+.++...+. +++++.++.++
T Consensus 104 ----~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy--------~AW~~R~~vl~~l~~~~~eel~~~~~~ 171 (331)
T 3dss_A 104 ----NPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF--------HCWDYRRFVAAQAAVAPAEELAFTDSL 171 (331)
T ss_dssp ----CTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHHhCcCHHHHHHHHHHH
Confidence 4556778999999999988 49999999999999866554 789999999999998 59999999999
Q ss_pred HHH
Q 011692 303 ISV 305 (479)
Q Consensus 303 L~I 305 (479)
|.+
T Consensus 172 I~~ 174 (331)
T 3dss_A 172 ITR 174 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00032 Score=57.73 Aligned_cols=66 Identities=17% Similarity=-0.060 Sum_probs=56.9
Q ss_pred chHHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~---yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
+.-++++..+|.+++..++ .++|...|++||.+.... ..+++.||..+...|+|++|+.+|++.+.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~--------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN--------EAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3457889999999986666 799999999999985443 48999999999999999999999998774
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00093 Score=57.88 Aligned_cols=78 Identities=17% Similarity=0.054 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.|++.|+.+|++|... ++ ..++ ||.+|.....+++|+..|++|.+. . .+.++++||.+|
T Consensus 9 ~d~~~A~~~~~~aa~~-----g~----~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~-------g---~~~a~~~Lg~~y 67 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-----NE----MFGC--LSLVSNSQINKQKLFQYLSKACEL-------N---SGNGCRFLGDFY 67 (138)
T ss_dssp HHHHHHHHHHHHHHHT-----TC----TTHH--HHHHTCTTSCHHHHHHHHHHHHHT-------T---CHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-----CC----Hhhh--HHHHHHcCCCHHHHHHHHHHHHcC-------C---CHHHHHHHHHHH
Confidence 5788888888877532 11 1233 999999999999999999999876 2 268999999999
Q ss_pred Hc----CCChhHHHHHHHHHHHH
Q 011692 287 EI----GSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~----~g~~eeAi~~~ekAL~I 305 (479)
.. ..++++|+.+|++|.+.
T Consensus 68 ~~G~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 68 ENGKYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HcCCCCCccHHHHHHHHHHHHcC
Confidence 98 88999999999999864
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00081 Score=70.96 Aligned_cols=63 Identities=14% Similarity=0.112 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC--CChhHHHHHHHHHHHHHH
Q 011692 237 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG--SKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 237 ~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~--g~~eeAi~~~ekAL~I~k 307 (479)
+..|...|...|+|++|+..|+++|.+-+.+ ...+..||.+|..- +++-++++.|...+.|-+
T Consensus 210 l~~lv~~Yek~G~~eEai~lLe~aL~le~ah--------~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k 274 (449)
T 1b89_A 210 LEELINYYQDRGYFEELITMLEAALGLERAH--------MGMFTELAILYSKFKPQKMREHLELFWSRVNIPK 274 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCC--------HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHH--------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence 3345566666666666666666666554332 24555555555433 355566666666655544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0038 Score=51.17 Aligned_cols=48 Identities=15% Similarity=0.059 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 210 DLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 210 e~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
+.|..+|+.|+.+ .+....+++.||.+++..|+|++|+..|++.|...
T Consensus 26 ~~A~~~l~~AL~~-------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 26 DEVSLLLEQALQL-------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHH-------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3466667777654 45678899999999999999999999999988753
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.90 E-value=0.011 Score=51.90 Aligned_cols=103 Identities=11% Similarity=0.068 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHcC
Q 011692 211 LAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR-HIAELNFRICLCLEIG 289 (479)
Q Consensus 211 ~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r-~iAea~~~LG~ay~~~ 289 (479)
..-+.|..++.-|.+......-..++.+++|..++...+-. +-++.+.|++.++..++| .-=+++|.||+.|.+.
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~----d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYND----DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHH----HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHh
Confidence 44566777888887664322245789999999999977644 556788888888876644 5669999999999999
Q ss_pred CChhHHHHHHHHHHHHHH--HHHHHHHHHH
Q 011692 290 SKPQEAIPYCQKAISVCK--SRVQRLLNEV 317 (479)
Q Consensus 290 g~~eeAi~~~ekAL~I~k--~rl~~l~~~l 317 (479)
|+|++|+.+++..|++-. .....|+..+
T Consensus 88 g~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999999999999998855 3333444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=96.79 E-value=0.011 Score=59.38 Aligned_cols=138 Identities=12% Similarity=0.002 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcc
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de 147 (479)
.++-+|..++..|+|++|+.+|.+.+.. |+ .+...+++.....+|+.+
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~-----~~-~~~~lea~~l~vqi~L~~-------------------------- 149 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDN-----DE-AEGTTELLLLAIEVALLN-------------------------- 149 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTS-----SC-STTHHHHHHHHHHHHHHT--------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CC-CcCcHHHHHHHHHHHHHC--------------------------
Confidence 4567889999999999999999888553 22 247778888888888875
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011692 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 227 (479)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~ 227 (479)
+.+++|.++|+..+.+.....
T Consensus 150 -----------------------------------------------------------~r~d~A~k~l~~~~~~~~d~~ 170 (310)
T 3mv2_B 150 -----------------------------------------------------------NNVSTASTIFDNYTNAIEDTV 170 (310)
T ss_dssp -----------------------------------------------------------TCHHHHHHHHHHHHHHSCHHH
T ss_pred -----------------------------------------------------------CCHHHHHHHHHHHHhcCcccc
Confidence 345566666666554432000
Q ss_pred CCcchHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 228 GDSMEKVDILSALAEVALERE--DIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 228 ~~~~~~A~v~~~LGev~le~g--~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
. .-.-.-++..-|.|.+..| +|.+|...|++.+.- ++ + ......+++ |+..+|+|++|...+++.+..
T Consensus 171 ~-~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~----~p-~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 171 S-GDNEMILNLAESYIKFATNKETATSNFYYYEELSQT----FP-T-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp H-HHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT----SC-S-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSH
T ss_pred c-cchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh----CC-C-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHh
Confidence 0 0022334444455566556 999999999885432 22 1 123345555 899999999999999876665
Q ss_pred H
Q 011692 306 C 306 (479)
Q Consensus 306 ~ 306 (479)
.
T Consensus 241 ~ 241 (310)
T 3mv2_B 241 Y 241 (310)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0059 Score=62.33 Aligned_cols=126 Identities=7% Similarity=-0.031 Sum_probs=97.3
Q ss_pred HHHHHc-CCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccc
Q 011692 74 TNALKE-SDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNA 152 (479)
Q Consensus 74 ~~~~~~-gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~ 152 (479)
+..+.. ...++|++++.+++.+ +|++..+++.-|.+|..++
T Consensus 61 r~~~~~~e~se~AL~lt~~~L~~--------nP~~ytaWn~R~~iL~~l~------------------------------ 102 (349)
T 3q7a_A 61 RAIAAKEEKSERALELTEIIVRM--------NPAHYTVWQYRFSLLTSLN------------------------------ 102 (349)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTT------------------------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHHhh------------------------------
Confidence 334444 4457899999999999 8999999999999997651
Q ss_pred cCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcch
Q 011692 153 VNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSME 232 (479)
Q Consensus 153 ~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~~ 232 (479)
.+++.++++++.++.+ .++
T Consensus 103 ------------------------------------------------------~~l~eEL~~~~~~L~~-------nPK 121 (349)
T 3q7a_A 103 ------------------------------------------------------KSLEDELRLMNEFAVQ-------NLK 121 (349)
T ss_dssp ------------------------------------------------------CCHHHHHHHHHHHHHT-------TCC
T ss_pred ------------------------------------------------------hhHHHHHHHHHHHHHh-------CCC
Confidence 1355566666665532 356
Q ss_pred HHHHHHHHHHHHHhc-C-CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChh--------HHHHHHHHH
Q 011692 233 KVDILSALAEVALER-E-DIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ--------EAIPYCQKA 302 (479)
Q Consensus 233 ~A~v~~~LGev~le~-g-~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~e--------eAi~~~ekA 302 (479)
...+++..+.+.... + ++++++..+.++|.+..+. -.+++..+.++...++++ ++++++.++
T Consensus 122 ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkN--------y~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~ 193 (349)
T 3q7a_A 122 SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKN--------YHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEM 193 (349)
T ss_dssp CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTC--------HHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHhccccccchhhHHHHHHHHHHH
Confidence 678888899998888 7 8999999998888765444 378888899998888888 899999888
Q ss_pred HHHH
Q 011692 303 ISVC 306 (479)
Q Consensus 303 L~I~ 306 (479)
|++-
T Consensus 194 I~~d 197 (349)
T 3q7a_A 194 LRVD 197 (349)
T ss_dssp HHHC
T ss_pred HHhC
Confidence 8764
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=96.68 E-value=0.016 Score=59.16 Aligned_cols=136 Identities=8% Similarity=-0.122 Sum_probs=103.1
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 66 ADELMEKGTNALKES-DYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 66 A~~L~~~G~~~~~~g-dyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
......+|..+...+ +|++++.++.++|.+ +|++..++++-|.+|..+. +.
T Consensus 88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~--------nPKny~aW~hR~wlL~~l~-------~~------------- 139 (349)
T 3q7a_A 88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ--------NLKSYQVWHHRLLLLDRIS-------PQ------------- 139 (349)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT--------TCCCHHHHHHHHHHHHHHC-------CS-------------
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhc-------CC-------------
Confidence 345678888888899 599999999999987 8999999999999998751 00
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
+++. ++.++.
T Consensus 140 ---------------------------------------------------------------~~~~-------EL~~~~ 149 (349)
T 3q7a_A 140 ---------------------------------------------------------------DPVS-------EIEYIH 149 (349)
T ss_dssp ---------------------------------------------------------------CCHH-------HHHHHH
T ss_pred ---------------------------------------------------------------ChHH-------HHHHHH
Confidence 0112 223334
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCC-----
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIE--------TSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK----- 291 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~ye--------eAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~----- 291 (479)
+.+...++-..+++..+-+....++|+ +++.++.+++++....+ .++++.+.++...++
T Consensus 150 k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~--------SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 150 GSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNN--------SAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCH--------HHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCH--------HHHHHHHHHHHhccccccch
Confidence 444444556677777777777777777 89999999988755443 889999999999987
Q ss_pred --hhHHHHHHHHHHHHHH
Q 011692 292 --PQEAIPYCQKAISVCK 307 (479)
Q Consensus 292 --~eeAi~~~ekAL~I~k 307 (479)
+++++++++++|.+..
T Consensus 222 ~~~~eELe~~~~aI~~~P 239 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIP 239 (349)
T ss_dssp HHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHhCC
Confidence 6899999999987653
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.019 Score=58.07 Aligned_cols=134 Identities=7% Similarity=-0.138 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcC
Q 011692 68 ELMEKGTNALKESD----------YGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEG 137 (479)
Q Consensus 68 ~L~~~G~~~~~~gd----------yeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~ 137 (479)
....+|..+...++ |.+++.++..++.+ +|.+..++++-|.+|..+++
T Consensus 66 aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~--------~PKny~aW~hR~wlL~~l~~-------------- 123 (331)
T 3dss_A 66 LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--------NPKSYGTWHHRCWLLSRLPE-------------- 123 (331)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHCSS--------------
T ss_pred HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHhccCc--------------
Confidence 44555655555544 78899999999887 89999999999999976510
Q ss_pred CCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHH
Q 011692 138 DSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLD 217 (479)
Q Consensus 138 e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le 217 (479)
.+++.++++++
T Consensus 124 ---------------------------------------------------------------------~~~~~EL~~~~ 134 (331)
T 3dss_A 124 ---------------------------------------------------------------------PNWARELELCA 134 (331)
T ss_dssp ---------------------------------------------------------------------CCHHHHHHHHH
T ss_pred ---------------------------------------------------------------------ccHHHHHHHHH
Confidence 13555666666
Q ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC-------
Q 011692 218 VARAIAEKHWGDSMEKVDILSALAEVALERED-IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG------- 289 (479)
Q Consensus 218 ~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~-yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~------- 289 (479)
.++.+ +++-..+++..+-|....++ +++++.++.+++.+.... ..++++++.++...
T Consensus 135 k~l~~-------dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N--------~SAW~~R~~ll~~l~~~~~~~ 199 (331)
T 3dss_A 135 RFLEA-------DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSN--------YSSWHYRSCLLPQLHPQPDSG 199 (331)
T ss_dssp HHHHH-------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCC--------HHHHHHHHHHHHHHSCCC---
T ss_pred HHHHh-------CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHHhhhccccc
Confidence 66543 34556788888999999998 699999999999764333 37788888888765
Q ss_pred -------CChhHHHHHHHHHHHHHH
Q 011692 290 -------SKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 290 -------g~~eeAi~~~ekAL~I~k 307 (479)
+.++++++++.++|.+..
T Consensus 200 ~~~~~~~~~~~eEle~~~~ai~~~P 224 (331)
T 3dss_A 200 PQGRLPENVLLKELELVQNAFFTDP 224 (331)
T ss_dssp ---CCCHHHHHHHHHHHHHHHHHST
T ss_pred cccccchHHHHHHHHHHHHHHHhCC
Confidence 457889999999887653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.32 E-value=0.021 Score=51.71 Aligned_cols=55 Identities=18% Similarity=0.120 Sum_probs=43.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER 266 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ 266 (479)
.+++.+..+|+.... .. ...+..+|+++||..|..+++|++|+.+++++|++.+.
T Consensus 49 ~~~~~gI~lLe~ll~---~~--~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~ 103 (152)
T 1pc2_A 49 DDIRKGIVLLEELLP---KG--SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 103 (152)
T ss_dssp HHHHHHHHHHHHHHH---HS--CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHh---cC--CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 477788877776443 22 11257899999999999999999999999999999653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.11 Score=47.69 Aligned_cols=107 Identities=7% Similarity=-0.047 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELAL-ECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~p-e~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
..|+.+.+.++..+.|+.|+-+++-++.+...--.-..| .-+.++++||.+||..
T Consensus 21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~------------------------ 76 (167)
T 3ffl_A 21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHD------------------------ 76 (167)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcc------------------------
Confidence 457889999999999999999999999985331111233 4568999999999975
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
+.|-.|...|..|+.+...
T Consensus 77 -------------------------------------------------------------~eyrrA~~~y~qALq~~k~ 95 (167)
T 3ffl_A 77 -------------------------------------------------------------KEYRNAVSKYTMALQQKKA 95 (167)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHHHHHHC
T ss_pred -------------------------------------------------------------cHHHHHHHHHHHHHHHHHH
Confidence 4577888888888777653
Q ss_pred hcCC------------------cchHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 011692 226 HWGD------------------SMEKVDILSALAEVALEREDIETSLSDYQ 258 (479)
Q Consensus 226 ~~~~------------------~~~~A~v~~~LGev~le~g~yeeAl~dy~ 258 (479)
.... ...-+++.+.++.++++++++.+||..++
T Consensus 96 l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le 146 (167)
T 3ffl_A 96 LSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD 146 (167)
T ss_dssp C--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence 2211 11235788999999999999999987754
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=95.61 E-value=0.29 Score=49.01 Aligned_cols=87 Identities=6% Similarity=-0.047 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHH
Q 011692 208 DLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD--SRHIAELNFRICLC 285 (479)
Q Consensus 208 dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d--~r~iAea~~~LG~a 285 (479)
+++.|+.+|+... .+ .+........+. +++.+|+|++|...+++.+++...+-..+ .+.-+.++.|+..+
T Consensus 193 ~~q~A~~~f~El~---~~----~p~~~~~~lLln-~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l 264 (310)
T 3mv2_B 193 TATSNFYYYEELS---QT----FPTWKTQLGLLN-LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITL 264 (310)
T ss_dssp TTTHHHHHHHHHH---TT----SCSHHHHHHHHH-HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHH---Hh----CCCcccHHHHHH-HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHH
Confidence 3555676666532 22 222222233333 89999999999999998777754431111 12237889898888
Q ss_pred HHcCCChhHHHHHHHHHHH
Q 011692 286 LEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 286 y~~~g~~eeAi~~~ekAL~ 304 (479)
+..+|+ +|.++++++..
T Consensus 265 ~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 265 ALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp HHHTTC--TTHHHHHHHHH
T ss_pred HHHhCh--HHHHHHHHHHH
Confidence 888887 77777766554
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=95.55 E-value=0.11 Score=53.84 Aligned_cols=100 Identities=11% Similarity=0.001 Sum_probs=84.9
Q ss_pred CcChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 011692 205 DESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICL 284 (479)
Q Consensus 205 d~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ 284 (479)
+.++|..|.+++...+.-+.+ .++...+.++|...-.+|..++|+.++...|.+|..+.-.++ .+.+..|.....-|+
T Consensus 111 ~~~~y~~a~~~i~~l~~~~~~-~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~-~~p~i~a~i~~~~Gi 188 (394)
T 3txn_A 111 DTALYTEALALGAQLLRELKK-LDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIY-CPPKVQGALDLQSGI 188 (394)
T ss_dssp HTTCHHHHHHHHHHHHHHHTT-SSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCC-CCHHHHHHHHHHhhH
Confidence 347889998888777766554 344677899999999999999999999999999999998775 455668999999999
Q ss_pred HHH-cCCChhHHHHHHHHHHHHH
Q 011692 285 CLE-IGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 285 ay~-~~g~~eeAi~~~ekAL~I~ 306 (479)
.|. ..++|..|..+|-.|..-+
T Consensus 189 ~~l~~~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 189 LHAADERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHhcc
Confidence 999 9999999999999887554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.8 Score=47.69 Aligned_cols=117 Identities=16% Similarity=0.077 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCC-hhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELA-LECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~-pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
.++|.--..++..+...|+|.+|++++++. +.+.||.+. .+..++|+.--+.++..
T Consensus 134 ~erarl~~~La~i~e~~g~~~eA~~iL~~l---~~Et~~~~~~~~kve~~l~q~rl~l~~-------------------- 190 (445)
T 4b4t_P 134 VERARVTKDLVEIKKEEGKIDEAADILCEL---QVETYGSMEMSEKIQFILEQMELSILK-------------------- 190 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHH---HHHHCSSSCHHHHHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHH---HHHHHhcccHHHHHHHHHHHHHHHHHC--------------------
Confidence 356766778899999999999999998765 577888754 46667777766666654
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
+|+..|...+..++.
T Consensus 191 -----------------------------------------------------------------~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 191 -----------------------------------------------------------------GDYSQATVLSRKILK 205 (445)
T ss_dssp -----------------------------------------------------------------TCHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------CCHHHHHHHHHHHHH
Confidence 467778777888775
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM 267 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~l 267 (479)
.+........-.+..|..+|.++...++|.+|..+|..++......
T Consensus 206 ~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~ 251 (445)
T 4b4t_P 206 KTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIK 251 (445)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccccc
Confidence 4444433334568899999999999999999999999999876554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.27 E-value=0.067 Score=47.42 Aligned_cols=87 Identities=13% Similarity=0.099 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChh
Q 011692 214 KMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQ 293 (479)
Q Consensus 214 e~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~e 293 (479)
+-|.+.+..|.+..... -..++-+++|...+...+- .+.++++.|++.++..+....=+++|.|++.|.++|+|+
T Consensus 21 eeL~~l~~qy~~E~~~~-vs~qt~F~yAw~Lv~S~~~----~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~ 95 (134)
T 3o48_A 21 QQLEILRQQVVSEGGPT-ATIQSRFNYAWGLIKSTDV----NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYS 95 (134)
T ss_dssp HHHHHHHHHHHHTTGGG-SCHHHHHHHHHHHHHSSCH----HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHhCCC-CChhhHHHHHHHHHcCCCH----HHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHH
Confidence 45678888888764212 2468999999999888764 355667777776664333245699999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISV 305 (479)
Q Consensus 294 eAi~~~ekAL~I 305 (479)
+|+.+.+..|++
T Consensus 96 ~Ar~y~d~lL~~ 107 (134)
T 3o48_A 96 MAKRYVDTLFEH 107 (134)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999888865
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.13 Score=46.09 Aligned_cols=86 Identities=13% Similarity=0.086 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH
Q 011692 215 MLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294 (479)
Q Consensus 215 ~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee 294 (479)
-|...+..|.+.... .-..++.++++...+...+-. +-++.+.|++.++..+...-=+++|.|++.|.++++|++
T Consensus 21 eL~~lr~qY~~E~~~-~vs~~t~F~YAw~Lv~S~~~~----di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~ 95 (144)
T 1y8m_A 21 QLEILRQQVVSEGGP-TATIQSRFNYAWGLIKSTDVN----DERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSM 95 (144)
T ss_dssp HHHHHHHHHHHTTST-TSCHHHHHHHHHHHHHSSSHH----HHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHH
Confidence 466778888776332 345789999999999887754 445666666666532221234899999999999999999
Q ss_pred HHHHHHHHHHH
Q 011692 295 AIPYCQKAISV 305 (479)
Q Consensus 295 Ai~~~ekAL~I 305 (479)
|+.|++..|++
T Consensus 96 Ar~y~d~lL~~ 106 (144)
T 1y8m_A 96 AKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhc
Confidence 99999988865
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.15 Score=50.88 Aligned_cols=64 Identities=11% Similarity=0.033 Sum_probs=48.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcch-HHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSME-KVDILSALAEVALER-EDIETSLSDYQKALTILERMVEPDSRHIAELN 279 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~-~A~v~~~LGev~le~-g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~ 279 (479)
++.+.|.++|++|+.|- +. .++++...|+.++.. ++++.|...++++|.+-....+ ++.+++..
T Consensus 218 Gd~ekA~~~ferAL~Ln-------P~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P--~~~lan~~ 283 (301)
T 3u64_A 218 GGMEKAHTAFEHLTRYC-------SAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVP--HNKLLVIL 283 (301)
T ss_dssp CCHHHHHHHHHHHHHHC-------CTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCS--SCHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-------CCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCC--ChhHHHHH
Confidence 56788888999998873 33 378999999999995 9999999999999987554322 24455443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=0.44 Score=48.58 Aligned_cols=69 Identities=9% Similarity=0.053 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 310 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl 310 (479)
..+...+++.++..|+|.+|+..+.+.+.+..- + =..|..|-.+|...|+..+|+.+|++.-..+...|
T Consensus 171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-----~---E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eL 239 (388)
T 2ff4_A 171 VLAHTAKAEAEIACGRASAVIAELEALTFEHPY-----R---EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDL 239 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-----C---HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-----C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 456677889999999999999999988766321 1 25788899999999999999999999888776543
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=94.13 E-value=0.56 Score=51.68 Aligned_cols=94 Identities=4% Similarity=-0.077 Sum_probs=62.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhc-------CC--------cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 011692 207 SDLDLAWKMLDVARAIAEKHW-------GD--------SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD 271 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~-------~~--------~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d 271 (479)
++++.|.++|+.++..+.+.. .. +.....+|...+....+.++.+.|...|.+|++.. +..
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~----~~~ 467 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLK----KLV 467 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTG----GGS
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CCC
Confidence 567788888888877642111 00 01245678888888888899999999999997752 111
Q ss_pred ChhHHHHHHHHHHHHHcCC-ChhHHHHHHHHHHHHHH
Q 011692 272 SRHIAELNFRICLCLEIGS-KPQEAIPYCQKAISVCK 307 (479)
Q Consensus 272 ~r~iAea~~~LG~ay~~~g-~~eeAi~~~ekAL~I~k 307 (479)
. ..+|...+......+ +++.|...|+++|..+.
T Consensus 468 ~---~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p 501 (679)
T 4e6h_A 468 T---PDIYLENAYIEYHISKDTKTACKVLELGLKYFA 501 (679)
T ss_dssp C---THHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT
T ss_pred C---hHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 1 133445555544444 58999999999998765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=93.94 E-value=0.47 Score=52.31 Aligned_cols=85 Identities=12% Similarity=0.092 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 209 LDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALERED-IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 209 le~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~-yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
++.|..+|+.|+... ......+|...+.+-...++ ++.|...|+++|+... +++.+-. ..+..+.
T Consensus 450 l~~AR~vf~~A~~~~------~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-----~~~~~w~---~y~~fe~ 515 (679)
T 4e6h_A 450 LAASRKIFGKCRRLK------KLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-----TDGEYIN---KYLDFLI 515 (679)
T ss_dssp HHHHHHHHHHHHHTG------GGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-----TCHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-----CchHHHH---HHHHHHH
Confidence 445555555555321 11124566677777766654 8999999999998743 3333333 3333445
Q ss_pred cCCChhHHHHHHHHHHHHHH
Q 011692 288 IGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 288 ~~g~~eeAi~~~ekAL~I~k 307 (479)
..++.+.|...|++|+..+.
T Consensus 516 ~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 516 YVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHTCHHHHHHHHHHHTTTSS
T ss_pred hCCCHHHHHHHHHHHHHhcC
Confidence 56889999999999886543
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=93.42 E-value=3 Score=42.99 Aligned_cols=131 Identities=15% Similarity=0.028 Sum_probs=89.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccc
Q 011692 71 EKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVK 150 (479)
Q Consensus 71 ~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~ 150 (479)
.+|..++..|+|.+|..++.+.+.-.... ++..-+-++|..--+.++.+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~--dd~~~llev~lle~~~~~~~----------------------------- 152 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKL--DDKNLLVEVQLLESKTYHAL----------------------------- 152 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTS--SCTHHHHHHHHHHHHHHHHT-----------------------------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHHHh-----------------------------
Confidence 78999999999999999999888865432 22333444444444444432
Q ss_pred cccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCc
Q 011692 151 NAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDS 230 (479)
Q Consensus 151 ~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~ 230 (479)
+++..+...|..|+.+-.....+.
T Consensus 153 --------------------------------------------------------~n~~k~k~~l~~a~~~~~ai~~~p 176 (394)
T 3txn_A 153 --------------------------------------------------------SNLPKARAALTSARTTANAIYCPP 176 (394)
T ss_dssp --------------------------------------------------------TCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred --------------------------------------------------------ccHHHHHHHHHHHHhhhccCCCCH
Confidence 467778888899988876543333
Q ss_pred chHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCC
Q 011692 231 MEKVDILSALAEVAL-EREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK 291 (479)
Q Consensus 231 ~~~A~v~~~LGev~l-e~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~ 291 (479)
.-.+.+...-|.+++ ..++|..|..+|-+|+.-+. ...++.--.++..+++|-...+.
T Consensus 177 ~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~---~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 177 KVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD---SVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc---ccccHHHHHHHHHHHHHHHHcCC
Confidence 346888888899999 99999999999999974433 22344333444446666665554
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.10 E-value=0.29 Score=52.47 Aligned_cols=68 Identities=16% Similarity=0.065 Sum_probs=58.7
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD---SRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d---~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
...+.+++.|=..|+..+.|++|.....++. ++.. ..+.+.=+|.+|.++..+++|.+|..|+..|+.
T Consensus 228 ~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~------fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 228 ETKAMLINLILRDFLNNGEVDSASDFISKLE------YPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp CHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC------SCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred chhHHHHHHHHHHHHccCcHHHHHHHHhcCc------CCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4578999999999999999999998888773 5533 456788889999999999999999999999875
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.00 E-value=0.17 Score=53.92 Aligned_cols=64 Identities=17% Similarity=0.200 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
-.|+..||+++.-...+..|..+|.+|+.+.... ...|++||+.+...+++=+|+-||-++|.+
T Consensus 152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~--------G~~~nqLavla~~~~~~l~a~y~y~rsl~~ 215 (497)
T 1ya0_A 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN--------GQPYNQLAILASSKGDHLTTIFYYCRSIAV 215 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB--------SHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC--------CchHHHHHHHHhcccccHHHHHHHHHHHhc
Confidence 3488899999999999999999999999996554 589999999999999999999999999874
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.42 E-value=0.71 Score=47.70 Aligned_cols=95 Identities=15% Similarity=0.072 Sum_probs=74.8
Q ss_pred cCcChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 011692 204 EDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRIC 283 (479)
Q Consensus 204 ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG 283 (479)
.+.||++.|.+.|..++.-. .. ....++++..+-.+++..++|..+...+.++..+... +.+....+.....-|
T Consensus 142 ~~~Gd~~~A~~~~~~~~~~~-~~---~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~--~~d~~~~~~lk~~~g 215 (429)
T 4b4t_R 142 AQIGDKDNAEKTLGKSLSKA-IS---TGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK--GGDWERRNRYKTYYG 215 (429)
T ss_dssp HHHCCCTTHHHHHHHHHHHH-TC---CCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT--CCCTHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhc-CC---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc--CCCHHHHHHHHHHHH
Confidence 35677788888887766532 11 2357899999999999999999999999999887654 345555677778889
Q ss_pred HHHHcCCChhHHHHHHHHHHH
Q 011692 284 LCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 284 ~ay~~~g~~eeAi~~~ekAL~ 304 (479)
+.+...++|..|..+|-.++.
T Consensus 216 l~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 216 IHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHhChHHHHHHHHHHHhc
Confidence 999999999999999977544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.26 E-value=0.4 Score=43.60 Aligned_cols=83 Identities=13% Similarity=0.065 Sum_probs=68.3
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 310 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl 310 (479)
...+..+...+.. .+.++.++|...|+.|+.+ |...|-+|...+.--.++|+...|...+.+||.++..-.
T Consensus 58 rrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~--------hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 58 ESFARIQVRFAEL-KAIQEPDDARDYFQMARAN--------CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp HHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH--------CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH--------hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 4568888888855 7889999999999999997 333377777777777789999999999999999988777
Q ss_pred HHHHHHHhhhcc
Q 011692 311 QRLLNEVKSLGE 322 (479)
Q Consensus 311 ~~l~~~l~~~~~ 322 (479)
+.|+-.|..+..
T Consensus 129 ~~le~a~~nl~~ 140 (161)
T 4h7y_A 129 EMLEIALRNLNL 140 (161)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHhhhc
Confidence 778777777754
|
| >2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1 | Back alignment and structure |
|---|
Probab=91.05 E-value=1.1 Score=38.60 Aligned_cols=61 Identities=16% Similarity=0.129 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CC-CChhHHHHHHHHHHHHHhh
Q 011692 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GE-LALECVNAYYQYGRALLYK 121 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge-~~pe~A~~y~~YG~ALl~~ 121 (479)
..+..|..|+.++..+-..++|++|+.+|.+|++++.... .+ ..+..-..|-..-.-|+..
T Consensus 13 ~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~R 75 (117)
T 2cpt_A 13 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDR 75 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999999999999887654 44 5666555444444444443
|
| >1o9d_A 14-3-3-like protein C; protein-binding, fusicoccin, 14-3-3 family, activating drug; HET: TPO; 2.3A {Nicotiana tabacum} SCOP: a.118.7.1 PDB: 1o9c_A* 1o9e_A* 1o9f_A* 3e6y_A* | Back alignment and structure |
|---|
Probab=90.78 E-value=0.98 Score=44.21 Aligned_cols=73 Identities=23% Similarity=0.206 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDI---ETSLSDYQKALTILERMVEPDSRH-IAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~y---eeAl~dy~kAL~I~~~llg~d~r~-iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.++.|.-|+++.....+. +.|...|++|+.|.+..++|.||. +..+++.=-+-|+.+++.++|+..-++|..-
T Consensus 131 KGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd~ 207 (260)
T 1o9d_A 131 KGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDE 207 (260)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 467777888875443333 588999999999999889999987 4333333334455689999998887777643
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.36 E-value=1.8 Score=37.78 Aligned_cols=59 Identities=17% Similarity=0.193 Sum_probs=47.4
Q ss_pred ChHHHHHHHH--------HHHHHHHHHhcCCc-c-hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 207 SDLDLAWKML--------DVARAIAEKHWGDS-M-EKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 207 ~dle~Awe~L--------e~Ar~Iyek~~~~~-~-~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
-.|..||.+. ..+..+++...... + ..-+|++.||.-+..+|+|++|+.+++.+|++.+
T Consensus 37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 5799999653 44666666655543 3 6789999999999999999999999999999853
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=89.97 E-value=0.44 Score=48.94 Aligned_cols=88 Identities=14% Similarity=0.108 Sum_probs=56.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCCh
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALEREDI----ETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKP 292 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~y----eeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ 292 (479)
..|+.+|++.....|..+.+|..|+.+|+....+ ...+..+..++.-...+ ...+..+.+|.-+++++.+.|++
T Consensus 216 ~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~--~~~~~~a~~~~alal~~l~~gd~ 293 (372)
T 3ly7_A 216 NRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL--PELNNLSIIYQIKAVSALVKGKT 293 (372)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC--GGGTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc--ccCCcCHHHHHHHHHHHHhCCCH
Confidence 4556666665544566777777777766532111 22334444455422221 23355577888999999999999
Q ss_pred hHHHHHHHHHHHHH
Q 011692 293 QEAIPYCQKAISVC 306 (479)
Q Consensus 293 eeAi~~~ekAL~I~ 306 (479)
++|+.++++||.+-
T Consensus 294 d~A~~~l~rAl~Ln 307 (372)
T 3ly7_A 294 DESYQAINTGIDLE 307 (372)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999873
|
| >2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1 | Back alignment and structure |
|---|
Probab=89.85 E-value=1.6 Score=41.81 Aligned_cols=72 Identities=15% Similarity=0.026 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH-IAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~-iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
.++.|.-|+++. .|+-+.|...|+.|+.|....++|.||. +..+++.==+-|+.+++.++|+..-++|+.+.
T Consensus 126 KGDYyRYlAE~~--~g~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~p~~Ac~lAk~Afd~~ 198 (227)
T 2o8p_A 126 KSDISRYKLEFG--LCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKIL 198 (227)
T ss_dssp HHHHHHHHHHTT--SSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHc--cccHHHHHHHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 467777888864 4559999999999999999989999986 54444444445668999999999999998853
|
| >3iqu_A 14-3-3 protein sigma; signal transuction, nucleus, phosphoprotein, secreted, prote binding, signaling protein; HET: SEP; 1.05A {Homo sapiens} SCOP: a.118.7.1 PDB: 3iqj_A* 3iqv_A* 3mhr_A* 3lw1_A* 3o8i_A* 3p1n_A* 3p1o_A* 3t0l_A* 3t0m_A* 3u9x_A* 3ux0_A* 4dat_A* 4dau_A* 3p1s_A* 3p1r_A* 3smk_A* 3spr_A* 3p1q_A* 3p1p_A* 3sml_A* ... | Back alignment and structure |
|---|
Probab=89.85 E-value=1.2 Score=43.00 Aligned_cols=72 Identities=29% Similarity=0.420 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH-HHHcCCChhHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRICL-CLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~---yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~-ay~~~g~~eeAi~~~ekAL~ 304 (479)
.++.|.-|+++.....+ -+.|...|++|+.|....++|.||.---...|.+. -|+.+++.++|+..-++|..
T Consensus 129 KGDyyRYlAE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyyEiln~~~~Ac~lAk~Afd 204 (236)
T 3iqu_A 129 KGDYYRYLAEVATGDDKKRIIDSARSAYQEAMDISKKEMPPTNPIRLGLALNFSVFHYEIANSPEEAISLAKTTFD 204 (236)
T ss_dssp HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46777777777644433 36788999999999999999999874334444443 45578899988887777654
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.49 E-value=0.53 Score=48.69 Aligned_cols=87 Identities=11% Similarity=-0.009 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH
Q 011692 215 MLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294 (479)
Q Consensus 215 ~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee 294 (479)
-|+..+..+++.........+++..||..|++.|+|+.|+..|.+.+... .+. .+..+.++.+-.++.+.+++..
T Consensus 112 ~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~---~~~--~~kid~~l~~irl~l~~~d~~~ 186 (429)
T 4b4t_R 112 ELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA---IST--GAKIDVMLTIARLGFFYNDQLY 186 (429)
T ss_dssp HHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH---TCC--CSHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc---CCh--HHHHHHHHHHHHHHHHhccHHH
Confidence 34444444544222234567899999999999999999999999876543 333 3456888888888888999999
Q ss_pred HHHHHHHHHHHH
Q 011692 295 AIPYCQKAISVC 306 (479)
Q Consensus 295 Ai~~~ekAL~I~ 306 (479)
+..++.++..++
T Consensus 187 ~~~~~~ka~~~~ 198 (429)
T 4b4t_R 187 VKEKLEAVNSMI 198 (429)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998775
|
| >2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.22 E-value=2.1 Score=34.35 Aligned_cols=61 Identities=15% Similarity=0.085 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhh
Q 011692 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
..+..|..|+.+|...-..|+|++|+.+|.+|++++.... .+..|..-..+-.--.-|+..
T Consensus 8 ~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~R 69 (85)
T 2v6x_A 8 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNR 69 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 3577899999999999999999999999999999876643 345566555554444444443
|
| >2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=89.22 E-value=1.7 Score=35.02 Aligned_cols=52 Identities=19% Similarity=0.101 Sum_probs=41.3
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHH
Q 011692 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYY 112 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~pe~A~~y~ 112 (479)
..+..|..|+.+|..+-..|+|.+|+.+|.+|++.+.... .+..+..-+.|-
T Consensus 14 ~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir 66 (83)
T 2w2u_A 14 MLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYE 66 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4677899999999999999999999999999999877642 234455544443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.01 E-value=1.4 Score=45.91 Aligned_cols=100 Identities=14% Similarity=0.005 Sum_probs=75.4
Q ss_pred cCcChHHHHHHHHHH-HHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 011692 204 EDESDLDLAWKMLDV-ARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 282 (479)
Q Consensus 204 ed~~dle~Awe~Le~-Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~L 282 (479)
++.+++..|..+|.. -+..|. ..+....+++|.....+|++.++|.+|...+.++........ +.....+..|...
T Consensus 148 e~~g~~~eA~~iL~~l~~Et~~--~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~-~~~~lk~~~~~~~ 224 (445)
T 4b4t_P 148 KEEGKIDEAADILCELQVETYG--SMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNP-KYESLKLEYYNLL 224 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHCS--SSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccC-CcHHHHHHHHHHH
Confidence 455788888777643 333332 123456899999999999999999999999999864433332 2334567888889
Q ss_pred HHHHHcCCChhHHHHHHHHHHHHH
Q 011692 283 CLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 283 G~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
|..|...++|.+|..+|..+...+
T Consensus 225 ~~~~~~e~~y~~a~~~y~e~~~~~ 248 (445)
T 4b4t_P 225 VKISLHKREYLEVAQYLQEIYQTD 248 (445)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcc
Confidence 999999999999999999988765
|
| >1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1 | Back alignment and structure |
|---|
Probab=88.83 E-value=2.6 Score=34.59 Aligned_cols=59 Identities=12% Similarity=0.160 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHH
Q 011692 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALL 119 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~pe~A~~y~~YG~ALl 119 (479)
..+..|..|+.+|..+-..|+|.+|+.+|.+|++.+.... .+..+..-..+-.-=.-|+
T Consensus 10 ~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl 69 (93)
T 1wfd_A 10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYM 69 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3466799999999999999999999999999999887754 4556665554444333333
|
| >2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B* | Back alignment and structure |
|---|
Probab=88.72 E-value=1.9 Score=34.62 Aligned_cols=60 Identities=17% Similarity=0.068 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhh
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
.+..|..|+.+|..+-..|+|.+|+.+|.+|++.+.... .+..+..-+.|-.-=.-|+..
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~R 67 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKR 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999877642 334555555444333333433
|
| >2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C* | Back alignment and structure |
|---|
Probab=88.31 E-value=1.8 Score=41.65 Aligned_cols=72 Identities=25% Similarity=0.201 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRH-IAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~---yeeAl~dy~kAL~I~~~llg~d~r~-iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.++.|.-|+++.....+ -+.|...|++|+.|.+..++|.||. +..+++.=-+-|+..++.++|+..-++|+.
T Consensus 126 KGDyyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA~~~L~pthPirLgLaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 126 KGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46777788887544333 3688999999999999999999986 433333333445568999988887777654
|
| >4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.73 E-value=3.1 Score=33.71 Aligned_cols=57 Identities=12% Similarity=0.164 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHh
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLY 120 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~pe~A~~y~~YG~ALl~ 120 (479)
..|..|+.++..+-..|+|.+|+.+|.+|++++.... .+..|..-..+-.--.-|+.
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~ 71 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMD 71 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 3578899999999999999999999999999877664 56677665555443333333
|
| >3uzd_A 14-3-3 protein gamma; structural genomics, SGC, structural genomics consortium, MA alpha, phosphoserine, phosphothreonine; HET: SEP; 1.86A {Homo sapiens} PDB: 4e2e_A 2b05_A* 2c63_A* 2c74_A* 4dnk_A 4gnt_A 2bq0_A 2c23_A 2c1n_A* 2c1j_A* 2btp_A* | Back alignment and structure |
|---|
Probab=87.03 E-value=1.7 Score=42.19 Aligned_cols=72 Identities=26% Similarity=0.326 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHHcCCChhHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRIC-LCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~---yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG-~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.++.|.-|+++.....+ -+.|...|++|+.|....++|.||.---...|.+ +-|+.+++.++|+..-++|+.
T Consensus 127 KGDyyRYlAE~~~g~~r~~~~~~a~~aY~~A~~iA~~~L~pthPirLGLaLNfSVFyYEIln~~~~Ac~lAk~Afd 202 (248)
T 3uzd_A 127 KGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFD 202 (248)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45666667766543322 3688999999999999999999987333333443 445568899988887777654
|
| >3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A | Back alignment and structure |
|---|
Probab=86.95 E-value=3.1 Score=42.48 Aligned_cols=58 Identities=14% Similarity=0.105 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHH--HhcCCCC---------hhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHH
Q 011692 253 SLSDYQKALTILE--RMVEPDS---------RHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRV 310 (479)
Q Consensus 253 Al~dy~kAL~I~~--~llg~d~---------r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl 310 (479)
+..+|+.|++... ..++..+ ...|.+||..|..+...++|.+||.+++.|...++...
T Consensus 241 ~~~~Y~~A~~~l~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a~ 309 (380)
T 3c3r_A 241 AADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQKKFGEEIARLQHAAELIKTVA 309 (380)
T ss_dssp HHHHHHHHHHHHTTCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 3456666666655 2223332 23578899999999999999999999999998765543
|
| >2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A* | Back alignment and structure |
|---|
Probab=86.81 E-value=3.2 Score=34.35 Aligned_cols=52 Identities=21% Similarity=0.291 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHH-HHHHHHHHhh
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAY-YQYGRALLYK 121 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y-~~YG~ALl~~ 121 (479)
..|..|+..|+.+|..++|.+|.-+|.++..+ ..+|++-.++ |++|.|--.+
T Consensus 51 ~~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~------ten~~i~ki~~fyl~ec~kkl 103 (106)
T 2vkj_A 51 KKARSLIAEGKDLFETANYGEALVFFEKALNL------SDNEEIKKIASFYLEECRKKL 103 (106)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcchhHHHHHHHHHHcc------ccCHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999876 4589999999 8888886554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.35 E-value=6.6 Score=43.87 Aligned_cols=59 Identities=17% Similarity=0.165 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC 299 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ 299 (479)
.+..+...++..+..++|+-|+..-++|..+...-| .++|+|+.||..+++|+.|+-.+
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF--------~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSF--------ESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH--------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhh--------HHHHHHHHHHHHhccHHHHHHHH
Confidence 355777889999999999999999999999987776 89999999999999999998543
|
| >2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1 | Back alignment and structure |
|---|
Probab=86.06 E-value=7.7 Score=32.17 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=34.8
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 011692 230 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVE 269 (479)
Q Consensus 230 ~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg 269 (479)
++..|-.|...++-++..|+|++||+++++|..++...+.
T Consensus 11 pLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmk 50 (97)
T 2crb_A 11 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK 50 (97)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999988776654
|
| >3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A | Back alignment and structure |
|---|
Probab=85.46 E-value=7.6 Score=39.51 Aligned_cols=39 Identities=21% Similarity=-0.082 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Q 011692 274 HIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQR 312 (479)
Q Consensus 274 ~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~~ 312 (479)
..|.+||..|+.+...++|.+||.+++.|...++.-...
T Consensus 251 ~~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~~~ 289 (376)
T 3r9m_A 251 YTAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAEAL 289 (376)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999999999999988765444
|
| >2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A | Back alignment and structure |
|---|
Probab=85.24 E-value=3.5 Score=45.51 Aligned_cols=56 Identities=13% Similarity=0.077 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHH--HhcCCCC---------hhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 253 SLSDYQKALTILE--RMVEPDS---------RHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 253 Al~dy~kAL~I~~--~llg~d~---------r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
+..+|..|+.... ..++..+ ...|.+||..|..+...++|.+||.+++.|...++.
T Consensus 226 ~~~~Y~~A~~~l~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~ 292 (704)
T 2xs1_A 226 AADYFGDAFKQCQYKDTLPKEVFPVLAAKHCIMQANAEYHQSILAKQQYYFGEEIARLQHAAELIKT 292 (704)
T ss_dssp HHHHHHHHHHHHHTCCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHH
Confidence 3456677766655 2233332 335788999999999999999999999999987754
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.97 E-value=1.9 Score=39.83 Aligned_cols=54 Identities=24% Similarity=0.180 Sum_probs=38.1
Q ss_pred ChHHHHHHH--HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 207 SDLDLAWKM--LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 207 ~dle~Awe~--Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
-.|++|++. |+.|+.|.+.. +.-..|..||+..+..|+++-|..+|+++=.+-.
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~ 65 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDK 65 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHH
Confidence 355555543 45555554433 2356899999999999999999999998754433
|
| >2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=84.92 E-value=2.9 Score=40.83 Aligned_cols=71 Identities=23% Similarity=0.314 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHHcCCChhHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRIC-LCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~---yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG-~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.++.|.-|+++.....+ -+.|...|++|+.|. ..++|.||.---...|.+ +-|+.+++.++|+..-++|..
T Consensus 152 KGDYyRYlaE~~~g~~r~~~~e~a~~aY~~A~~iA-~~L~pthPirLGLaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 152 KGDYHRYISEFSTGDSKQSSAEDALKAYKDATVVA-KDLEPTHPIRLGLALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH-TTSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred hccHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHH-HhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46777788887544333 368899999999999 889999987333333333 444568999988887777654
|
| >2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1 | Back alignment and structure |
|---|
Probab=84.83 E-value=1.9 Score=35.73 Aligned_cols=41 Identities=17% Similarity=0.277 Sum_probs=35.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 011692 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYG 101 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~G 101 (479)
.-+..|..+--++.+++..|+|++|++|+.+|+..+.+-+-
T Consensus 10 spLn~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmk 50 (97)
T 2crb_A 10 GPLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK 50 (97)
T ss_dssp THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 34667889999999999999999999999999998776543
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=84.82 E-value=17 Score=38.07 Aligned_cols=84 Identities=11% Similarity=0.063 Sum_probs=59.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|+++|+..+. .+..+ -..+|+.|=..|+..|++++|...|++-++ .-+.|+ ..+|..|=.+|
T Consensus 119 g~~~~A~~l~~~M~~-----~g~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~---~G~~Pd----~~ty~~Li~~~ 185 (501)
T 4g26_A 119 DDPEMAFDMVKQMKA-----FGIQP-RLRSYGPALFGFCRKGDADKAYEVDAHMVE---SEVVPE----EPELAALLKVS 185 (501)
T ss_dssp TCHHHHHHHHHHHHH-----TTCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCCCC----HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-----cCCCC-ccceehHHHHHHHHCCCHHHHHHHHHHHHh---cCCCCC----HHHHHHHHHHH
Confidence 455556555544321 12222 256899999999999999999999887543 333333 36788888999
Q ss_pred HcCCChhHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL 303 (479)
...|++++|...|++-.
T Consensus 186 ~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred hhCCCHHHHHHHHHHHH
Confidence 99999999999998743
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.02 E-value=3.5 Score=36.35 Aligned_cols=58 Identities=10% Similarity=0.153 Sum_probs=44.5
Q ss_pred ChHHHHHHHH--------HHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 207 SDLDLAWKML--------DVARAIAEKHWGDS-MEKVDILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 207 ~dle~Awe~L--------e~Ar~Iyek~~~~~-~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
..|..||.+. ..+..+++...... ...-+|+..||.-+..+|+|+.|+.+.+.+|++.
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 5788999764 34555554443322 3578999999999999999999999999988874
|
| >1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.83 E-value=5.4 Score=40.76 Aligned_cols=58 Identities=17% Similarity=0.149 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHhcC-------C---------CChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 252 TSLSDYQKALTILERMVE-------P---------DSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 252 eAl~dy~kAL~I~~~llg-------~---------d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
++..+|+.|+........ . .+...|.+||..|..+...++|.+||.+++.|...++..
T Consensus 217 ~~~~~Y~~a~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~l~~a 290 (392)
T 1zb1_A 217 ATCNLFQKCHDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLSAYYHGLHLEEENRVGEAIAFLDFSMQQLISS 290 (392)
T ss_dssp HHHHHHHHHHHHHHSCCCTTTSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHH
Confidence 455667777776665421 1 123467889999999999999999999999998765443
|
| >3ubw_A 14-3-3E, 14-3-3 protein epsilon; adapter protein, signaling protein, signaling protein-protei complex; HET: SEP; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.51 E-value=3.1 Score=40.63 Aligned_cols=72 Identities=26% Similarity=0.268 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HHHHcCCChhHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRIC-LCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~---yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG-~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.++.|.-|+++.....+ -+.|...|++|+.|....++|.||.---...|.+ +-|+.+++.++|+..-++|..
T Consensus 152 KGDYyRYlAE~~~g~~rk~~~e~a~~aY~~A~~iA~~~L~pThPirLGLaLNfSVFyYEIln~p~~Ac~LAk~AFd 227 (261)
T 3ubw_A 152 KGDYHRYLAEFATGNDRKEAAENSLVAYKAASDIAMTELPPTHPIRLGLALNFSVFYYEILNSPDRACRLAKAAFD 227 (261)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred hccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHhhCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 46677777776544333 3678999999999999999999987433334444 345568899988887777654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=83.29 E-value=6.6 Score=35.02 Aligned_cols=59 Identities=10% Similarity=0.155 Sum_probs=44.7
Q ss_pred cChHHHHHHHH--------HHHHHHHHHhcCC-cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 011692 206 ESDLDLAWKML--------DVARAIAEKHWGD-SMEKVDILSALAEVALEREDIETSLSDYQKALTIL 264 (479)
Q Consensus 206 ~~dle~Awe~L--------e~Ar~Iyek~~~~-~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~ 264 (479)
...|+.||.+. ..+..+++..... ....=+|+..||.-+..+++|++|..+.+.+|++.
T Consensus 40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 35899999764 3444455444322 23578899999999999999999999999998874
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=80.80 E-value=2.8 Score=44.97 Aligned_cols=82 Identities=18% Similarity=0.177 Sum_probs=48.8
Q ss_pred hHHHHHH--HHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----HhcCCCChhHHHHHH
Q 011692 208 DLDLAWK--MLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE-----RMVEPDSRHIAELNF 280 (479)
Q Consensus 208 dle~Awe--~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~-----~llg~d~r~iAea~~ 280 (479)
.|++|+. .|+.|+.+.... ..-..|..||+.++..++|+.|+..|.++-.... ...+ . .+-+-
T Consensus 658 ~f~~~l~~~~~~~A~~~~~~~-----~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~--~---~~~~~ 727 (814)
T 3mkq_A 658 KFELALKVGQLTLARDLLTDE-----SAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFN--N---KEGLV 727 (814)
T ss_dssp HHHHHHHHTCHHHHHHHHTTC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT--C---HHHHH
T ss_pred heehhhhcCCHHHHHHHHHhh-----CcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcC--C---HHHHH
Confidence 3444444 356666665433 2246899999999999999999999999733322 2221 1 12233
Q ss_pred HHHHHHHcCCChhHHHHHH
Q 011692 281 RICLCLEIGSKPQEAIPYC 299 (479)
Q Consensus 281 ~LG~ay~~~g~~eeAi~~~ 299 (479)
+++......|+++.|..+|
T Consensus 728 ~~~~~a~~~~~~~~A~~~~ 746 (814)
T 3mkq_A 728 TLAKDAETTGKFNLAFNAY 746 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCchHHHHHHH
Confidence 4555555555555555444
|
| >3efz_A 14-3-3 protein; 14-3-3, cell regulation, structural genom structural genomics consortium, SGC; HET: SEP; 2.08A {Cryptosporidium parvum} SCOP: a.118.7.1 PDB: 2ijp_A* | Back alignment and structure |
|---|
Probab=80.27 E-value=3.3 Score=40.65 Aligned_cols=71 Identities=18% Similarity=0.294 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHHH-HcCCChhHHHHHHHHHHH
Q 011692 234 VDILSALAEVALERED---IETSLSDYQKALTILERMV--EPDSRHIAELNFRICLCL-EIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 234 A~v~~~LGev~le~g~---yeeAl~dy~kAL~I~~~ll--g~d~r~iAea~~~LG~ay-~~~g~~eeAi~~~ekAL~ 304 (479)
++.|.-|+++.....+ -+.|...|++|+.|.+..+ +|.||.---...|.+.-| +.+++.++|+..-++|+.
T Consensus 149 GDYyRYlAE~~~g~erk~~~e~a~~aYq~A~eiA~~~L~~~pThPiRLGLaLNfSVFyYEIln~p~~Ac~lAk~AFd 225 (268)
T 3efz_A 149 GDLMRYKAEILKDEEKNQCIKQAVEFYEDALQRERSFLEKYPSDPLYLATILNYTILKYDLLGNPEGAMKFANRAIQ 225 (268)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred chHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4555555555433222 3688999999999999888 999987444444555444 468899988887777664
|
| >2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.24 E-value=12 Score=29.65 Aligned_cols=37 Identities=8% Similarity=0.001 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 275 IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 275 iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
-|..+.+.++-....|+|++|+.+|..|++.|..-+.
T Consensus 12 ~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k 48 (85)
T 2v6x_A 12 KGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALK 48 (85)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666778899999999999999998877654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 479 | ||||
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 5e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 8e-04 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 0.002 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 0.002 |
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.7 bits (107), Expect = 5e-06
Identities = 32/268 (11%), Positives = 72/268 (26%), Gaps = 11/268 (4%)
Query: 57 GEREKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGR 116
+ K E AD ++ T + A + F +A + + E E N Y + +
Sbjct: 28 SDSYKFEEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE--DEAGNTYVEAYK 85
Query: 117 ALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQD 176
+K+ + V + + N + + + + +
Sbjct: 86 C--FKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF--ELGEILENDLHDYAKAIDCY 141
Query: 177 EAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDI 236
E A + D A+ + A + + + D
Sbjct: 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY 201
Query: 237 LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGS--KPQE 294
L D + Q+ + DSR + + + G + E
Sbjct: 202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNF--ADSRE-SNFLKSLIDAVNEGDSEQLSE 258
Query: 295 AIPYCQKAISVCKSRVQRLLNEVKSLGE 322
+ + K ++ L +S+ +
Sbjct: 259 HCKEFDNFMRLDKWKITILNKIKESIQQ 286
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 2e-05
Identities = 35/324 (10%), Positives = 86/324 (26%), Gaps = 19/324 (5%)
Query: 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQ 123
+ L+ + + +A + A++ AY G + Q
Sbjct: 31 DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLL--------AEAYSNLGNVYKERGQ 82
Query: 124 EEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAV 183
+ + V +V + + + D
Sbjct: 83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142
Query: 184 PGDNEEDEEGNDGENVAEADEDESDLDLAWKML---DVARAIAEKHWGDSMEKVDILSAL 240
+A E + + +AW L A+ + V +
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202
Query: 241 AEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQ 300
+ + ++ + +A+ R + H C+ E G AI +
Sbjct: 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG-LIDLAIDTYR 261
Query: 301 KAISVCKSRVQRLLNEVKSLGESATSSAPAELDDGIQQSSSEFQNDKLLTDKEAEIETLS 360
+AI + N +L E + + ++ + D + +
Sbjct: 262 RAIELQPHFPDAYCNLANALKEK------GSVAEAEDCYNTALRLCPTHADSLNNLANIK 315
Query: 361 GLCGDLEKKLEDLQQ-VALFPKSI 383
G++E+ + ++ + +FP+
Sbjct: 316 REQGNIEEAVRLYRKALEVFPEFA 339
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.3 bits (90), Expect = 8e-04
Identities = 40/245 (16%), Positives = 77/245 (31%), Gaps = 48/245 (19%)
Query: 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQ 123
FA G + + A F +A+ + + ++AY G L
Sbjct: 167 NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF--------LDAYINLGNVLKEARI 218
Query: 124 -EEADPLVSVPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADD- 181
+ A + + + A + D A D
Sbjct: 219 FDRA---------VAAYLRALSLSPNHAVVHG---------NLACVYYEQGLIDLAIDTY 260
Query: 182 --AVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKVDILSA 239
A+ + N+A A +++ + A + A + H
Sbjct: 261 RRAIELQPHFPDAYC---NLANALKEKGSVAEAEDCYNTALRLCPTHADSLNN------- 310
Query: 240 LAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYC 299
LA + E+ +IE ++ Y+KAL + P+ A + + L+ K QEA+ +
Sbjct: 311 LANIKREQGNIEEAVRLYRKALEV-----FPEF---AAAHSNLASVLQQQGKLQEALMHY 362
Query: 300 QKAIS 304
++AI
Sbjct: 363 KEAIR 367
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.7 bits (86), Expect = 0.002
Identities = 6/60 (10%), Positives = 18/60 (30%), Gaps = 1/60 (1%)
Query: 256 DYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQRLLN 315
D++ A ++ + + L + + + + + AI + N
Sbjct: 14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQNPLLAEAYSN 72
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (85), Expect = 0.002
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 8/68 (11%)
Query: 58 EREKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRA 117
E E + + E+G L+E D A F A++ H + A+ G
Sbjct: 11 EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKH--------MEAWQYLGTT 62
Query: 118 LLYKAQEE 125
QE
Sbjct: 63 QAENEQEL 70
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 479 | |||
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.5 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.47 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.47 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.46 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.39 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.37 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.36 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.35 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.33 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.32 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.26 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.25 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.23 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.2 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.19 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.19 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.17 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.15 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.15 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.12 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.1 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.09 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.06 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.06 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.03 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.98 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.96 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.95 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.93 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.93 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.92 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.91 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.9 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.9 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.84 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.78 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.77 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.76 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.7 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.59 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.55 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.45 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.36 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.18 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.17 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.06 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.97 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.59 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 97.22 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 96.98 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 96.88 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.58 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.24 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 96.11 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.84 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.28 | |
| d1wfda_ | 93 | Hypothetical protein 1500032H18Rik {Mouse (Mus mus | 95.16 | |
| d1wr0a1 | 77 | Vacuolar sorting protein 4b (VPS4B, SKD1 protein) | 93.0 | |
| d2o8pa1 | 220 | 14-3-3 domain containing protein cgd7_2470 {Crypto | 92.34 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 90.12 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 89.53 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 88.8 | |
| d1wfda_ | 93 | Hypothetical protein 1500032H18Rik {Mouse (Mus mus | 87.6 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 86.98 |
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=1.1e-13 Score=126.66 Aligned_cols=141 Identities=15% Similarity=0.086 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQ 141 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~ 141 (479)
++..+..|.++|..++..|+|+.|+++|.++ .+..+.+||++|.+++.+
T Consensus 1 s~~~~~~l~~~g~~~~~~~d~~~Al~~~~~i-----------~~~~~~~~~nlG~~~~~~-------------------- 49 (192)
T d1hh8a_ 1 SLVEAISLWNEGVLAADKKDWKGALDAFSAV-----------QDPHSRICFNIGCMYTIL-------------------- 49 (192)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHTS-----------SSCCHHHHHHHHHHHHHT--------------------
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHhc-----------CCCCHHHHHHHHHHHHHc--------------------
Confidence 3567889999999999999999999999753 233467899999999875
Q ss_pred CCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHH
Q 011692 142 GSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARA 221 (479)
Q Consensus 142 ~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~ 221 (479)
++|+.|.+.|+.|+.
T Consensus 50 -----------------------------------------------------------------g~~~~A~~~~~kAl~ 64 (192)
T d1hh8a_ 50 -----------------------------------------------------------------KNMTEAEKAFTRSIN 64 (192)
T ss_dssp -----------------------------------------------------------------TCHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------------CCchhHHHHHHHHHH
Confidence 467888888888876
Q ss_pred HHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh-------cC-CCChhHHHHHHHHHHHHHcCCChh
Q 011692 222 IAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERM-------VE-PDSRHIAELNFRICLCLEIGSKPQ 293 (479)
Q Consensus 222 Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~l-------lg-~d~r~iAea~~~LG~ay~~~g~~e 293 (479)
+ .+..+.+|.++|.++..+|+|++|+.+|++||.+.+.. ++ ......++++|++|++|...++++
T Consensus 65 l-------dp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~ 137 (192)
T d1hh8a_ 65 R-------DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWK 137 (192)
T ss_dssp H-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHH
T ss_pred H-------hhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHH
Confidence 5 34678999999999999999999999999999865431 11 113345799999999999999999
Q ss_pred HHHHHHHHHHHH
Q 011692 294 EAIPYCQKAISV 305 (479)
Q Consensus 294 eAi~~~ekAL~I 305 (479)
+|+.+|++|+.+
T Consensus 138 ~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 138 KAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhc
Confidence 999999999865
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=2.5e-13 Score=125.35 Aligned_cols=142 Identities=16% Similarity=0.045 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
..+..|+.+|..++.+|+|++|+.+|.+|+++ +|.++.+|+++|.+++.+
T Consensus 35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l--------~p~~~~a~~~lg~~~~~~---------------------- 84 (259)
T d1xnfa_ 35 ERAQLLYERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQA---------------------- 84 (259)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHT----------------------
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc--------CCCCHHHHhhhchHHHHH----------------------
Confidence 46889999999999999999999999999999 899999999999999875
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++++.|.+.|+.|+.+
T Consensus 85 ---------------------------------------------------------------g~~~~A~~~~~~al~~- 100 (259)
T d1xnfa_ 85 ---------------------------------------------------------------GNFDAAYEAFDSVLEL- 100 (259)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHH-
T ss_pred ---------------------------------------------------------------HHHHHhhhhhhHHHHH-
Confidence 4577788888877765
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----------------------------h-------
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILER-----------------------------M------- 267 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~-----------------------------l------- 267 (479)
.+..+.+|.+||.++..+|+|++|+.+|+++|++... .
T Consensus 101 ------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (259)
T d1xnfa_ 101 ------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWG 174 (259)
T ss_dssp ------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTH
T ss_pred ------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhh
Confidence 2345678999999999999999999999998865311 0
Q ss_pred -------cCC-------------------CChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 268 -------VEP-------------------DSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 268 -------lg~-------------------d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
++. ..+..+.+|++||.+|..+|++++|+.+|++||..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 175 WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 000 13456778999999999999999999999999864
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.47 E-value=1e-12 Score=126.17 Aligned_cols=152 Identities=14% Similarity=0.028 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
-+..|...|..+..+|+|++|+++|.+|+++.... ...++.+.+|+++|.+|...
T Consensus 36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~--~~~~~~a~~~~~~g~~y~~~----------------------- 90 (290)
T d1qqea_ 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKA--GNEDEAGNTYVEAYKCFKSG----------------------- 90 (290)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHh-----------------------
Confidence 36678888999999999999999999999997664 34578999999999999764
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++++.|.+.++.+..|+.
T Consensus 91 --------------------------------------------------------------~~~~~A~~~~~~a~~~~~ 108 (290)
T d1qqea_ 91 --------------------------------------------------------------GNSVNAVDSLENAIQIFT 108 (290)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------CCcHHHHHHHHHhhHHhh
Confidence 457789999999999998
Q ss_pred HhcCCcchHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALE-REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le-~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
+.. .....+.++..||.++.. .++|++|+..|++|+.|.+.. ...+..+.+|++||.+|..+|+|++|+.+|++++
T Consensus 109 ~~~-~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~--~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~ 185 (290)
T d1qqea_ 109 HRG-QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD--QSVALSNKCFIKCADLKALDGQYIEASDIYSKLI 185 (290)
T ss_dssp HTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcc-cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhc--CchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHH
Confidence 774 345678999999999854 699999999999999998875 2456688999999999999999999999999998
Q ss_pred HHH
Q 011692 304 SVC 306 (479)
Q Consensus 304 ~I~ 306 (479)
.+.
T Consensus 186 ~~~ 188 (290)
T d1qqea_ 186 KSS 188 (290)
T ss_dssp HTT
T ss_pred HhC
Confidence 763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=7.3e-13 Score=116.39 Aligned_cols=120 Identities=18% Similarity=0.242 Sum_probs=102.4
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCC
Q 011692 60 EKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDS 139 (479)
Q Consensus 60 ~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~ 139 (479)
...+++|..|..+|..++..|+|++|+.+|++|+++ +|..+.+|+++|.+|+.+
T Consensus 4 ~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~------------------ 57 (159)
T d1a17a_ 4 DGALKRAEELKTQANDYFKAKDYENAIKFYSQAIEL--------NPSNAIYYGNRSLAYLRT------------------ 57 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHT------------------
T ss_pred hHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhcccc--------chhhhhhhhhhHHHHHhc------------------
Confidence 356789999999999999999999999999999998 899999999999999986
Q ss_pred CCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHH
Q 011692 140 QQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVA 219 (479)
Q Consensus 140 ~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~A 219 (479)
++++.|+.+|++|
T Consensus 58 -------------------------------------------------------------------~~~~~A~~~~~ka 70 (159)
T d1a17a_ 58 -------------------------------------------------------------------ECYGYALGDATRA 70 (159)
T ss_dssp -------------------------------------------------------------------TCHHHHHHHHHHH
T ss_pred -------------------------------------------------------------------cccchHHHHHHHH
Confidence 4577788888888
Q ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 011692 220 RAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLE 287 (479)
Q Consensus 220 r~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~ 287 (479)
+.+ .+..+.+|..||.++..+|+|++|+.+|++++.+. |+++ .++..|+.++.
T Consensus 71 l~~-------~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~-----p~~~---~~~~~l~~~~~ 123 (159)
T d1a17a_ 71 IEL-------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVK-----PHDK---DAKMKYQECNK 123 (159)
T ss_dssp HHH-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----TTCH---HHHHHHHHHHH
T ss_pred HHH-------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCH---HHHHHHHHHHH
Confidence 866 34568899999999999999999999999999983 3333 45556665543
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=1.7e-12 Score=122.82 Aligned_cols=165 Identities=19% Similarity=0.195 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCc--CCCCCCCcCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADP--LVSVPKKEGDSQQGS 143 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdv--LG~~~~~~~e~~~~~ 143 (479)
...+..+|..++..|+|++|+.+|.++..+ .+..+..++.+|.+++..++.+..+ +-.+..
T Consensus 203 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--------- 265 (388)
T d1w3ba_ 203 LDAYINLGNVLKEARIFDRAVAAYLRALSL--------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--------- 265 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------
T ss_pred HHHHHHHhhhhhccccHHHHHHHHHHhHHH--------hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------
Confidence 456777888888888888888888888776 5677788888888888765442210 000000
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
.++... +.- -..+..-...+++..|.++|+.+..+
T Consensus 266 ---------~~p~~~-----------------~~~------------------~~l~~~~~~~~~~~~A~~~~~~~~~~- 300 (388)
T d1w3ba_ 266 ---------LQPHFP-----------------DAY------------------CNLANALKEKGSVAEAEDCYNTALRL- 300 (388)
T ss_dssp ---------TCSSCH-----------------HHH------------------HHHHHHHHHHSCHHHHHHHHHHHHHH-
T ss_pred ---------hCCCCH-----------------HHH------------------HHHHHHHHHcCCHHHHHHHHHhhhcc-
Confidence 000000 000 00000001124455566555555432
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL 303 (479)
.+....++..+|.++...|+|++|+..|+++|++. |..+.+|++||.+|..+|++++|+.+|++||
T Consensus 301 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 366 (388)
T d1w3ba_ 301 ------CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--------PEFAAAHSNLASVLQQQGKLQEALMHYKEAI 366 (388)
T ss_dssp ------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC--------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred ------CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34567899999999999999999999999998763 3347899999999999999999999999999
Q ss_pred HHH
Q 011692 304 SVC 306 (479)
Q Consensus 304 ~I~ 306 (479)
++.
T Consensus 367 ~l~ 369 (388)
T d1w3ba_ 367 RIS 369 (388)
T ss_dssp TTC
T ss_pred HhC
Confidence 753
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.37 E-value=7.4e-12 Score=109.96 Aligned_cols=124 Identities=18% Similarity=0.035 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC----CChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcC
Q 011692 62 TVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGE----LALECVNAYYQYGRALLYKAQEEADPLVSVPKKEG 137 (479)
Q Consensus 62 ~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge----~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~ 137 (479)
.+..+-.++..|..++..|+|++|+..|.+|++|....... .++..+.+|+++|.+|+.+
T Consensus 5 ~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~l---------------- 68 (156)
T d2hr2a1 5 EVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGL---------------- 68 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHc----------------
Confidence 34567777888999999999999999999999997665432 2345688999999999876
Q ss_pred CCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHH
Q 011692 138 DSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLD 217 (479)
Q Consensus 138 e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le 217 (479)
++|+.|++.++
T Consensus 69 ---------------------------------------------------------------------g~~~~A~~~~~ 79 (156)
T d2hr2a1 69 ---------------------------------------------------------------------RSFDEALHSAD 79 (156)
T ss_dssp ---------------------------------------------------------------------TCHHHHHHHHH
T ss_pred ---------------------------------------------------------------------CccchhhHhhh
Confidence 46888999999
Q ss_pred HHHHHHHHhcCC----cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 011692 218 VARAIAEKHWGD----SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEP 270 (479)
Q Consensus 218 ~Ar~Iyek~~~~----~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~ 270 (479)
.|+.++.+.... .+..+.+|+++|.++..+|+|++|+.+|++||+|.++..+.
T Consensus 80 ~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~ 136 (156)
T d2hr2a1 80 KALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 136 (156)
T ss_dssp HHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred hhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhch
Confidence 999999887543 23467789999999999999999999999999999987653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.36 E-value=6.7e-12 Score=110.28 Aligned_cols=101 Identities=19% Similarity=0.139 Sum_probs=88.6
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCC-----cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC---CCChhHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGD-----SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVE---PDSRHIAEL 278 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~-----~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg---~d~r~iAea 278 (479)
++|+.|.+.|+.|+.|+...++. ....+.+|++||.+|..+|+|++|+.+|+++|.+..+... ..++..+.+
T Consensus 23 g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a 102 (156)
T d2hr2a1 23 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA 102 (156)
T ss_dssp TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHH
Confidence 57999999999999999877552 2346889999999999999999999999999999998644 335678889
Q ss_pred HHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 279 NFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 279 ~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
|+++|.+|..+|++++|+.+|++||++.+
T Consensus 103 ~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 103 VYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 99999999999999999999999998754
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=8.4e-12 Score=118.59 Aligned_cols=85 Identities=12% Similarity=0.105 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAI 296 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi 296 (479)
+.|+..|++.....+..+.+|..||.++..+|+|++|+.+|+++|++. |..+.+|++||.+|...|+|++|+
T Consensus 189 ~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 189 DKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ--------PGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred hhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh--------hccHHHHHHHHHHHHHCCCHHHHH
Confidence 444444544433345678899999999999999999999999999873 223689999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 011692 297 PYCQKAISVCKSR 309 (479)
Q Consensus 297 ~~~ekAL~I~k~r 309 (479)
.+|++||++.+..
T Consensus 261 ~~~~~al~l~p~~ 273 (323)
T d1fcha_ 261 EHFLEALNMQRKS 273 (323)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCcC
Confidence 9999999986543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=1.3e-11 Score=105.39 Aligned_cols=107 Identities=16% Similarity=0.212 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCC
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGS 143 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~ 143 (479)
.+|..+.++|..++..|+|++|+.+|.+|+++ +|....+|+++|.+|+.+
T Consensus 2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~--------~p~~~~~~~~~a~~~~~~---------------------- 51 (128)
T d1elra_ 2 KQALKEKELGNDAYKKKDFDTALKHYDKAKEL--------DPTNMTYITNQAAVYFEK---------------------- 51 (128)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH----------------------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcccHHHHHhHHHHHHHc----------------------
Confidence 35778889999999999999999999999998 788999999999999986
Q ss_pred CCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHH
Q 011692 144 DKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIA 223 (479)
Q Consensus 144 ~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iy 223 (479)
++|+.|.+.++.|+.+.
T Consensus 52 ---------------------------------------------------------------~~~~~A~~~~~~al~l~ 68 (128)
T d1elra_ 52 ---------------------------------------------------------------GDYNKCRELCEKAIEVG 68 (128)
T ss_dssp ---------------------------------------------------------------TCHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------CchHHHHHHHHHHHHhC
Confidence 46888999999999998
Q ss_pred HHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 011692 224 EKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTI 263 (479)
Q Consensus 224 ek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I 263 (479)
.+.......++.+|..||.++..+++|++|+.+|+++|.+
T Consensus 69 ~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 69 RENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 8887777789999999999999999999999999999875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.32 E-value=1.1e-11 Score=110.01 Aligned_cols=104 Identities=22% Similarity=0.230 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
|..|..+|..++..|+|++|+.+|.+|+++ .|.++.+|+++|.+|+.+
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--------~p~~~~~~~~lg~~y~~~------------------------ 51 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--------NPLVAVYYTNRALCYLKM------------------------ 51 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CSCCHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHhHHHHHhhh------------------------
Confidence 678999999999999999999999999999 799999999999999876
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|...|+.|+.
T Consensus 52 -------------------------------------------------------------~~~~~Ai~~~~~al~---- 66 (201)
T d2c2la1 52 -------------------------------------------------------------QQPEQALADCRRALE---- 66 (201)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHTT----
T ss_pred -------------------------------------------------------------hhhhhhhHHHHHHHH----
Confidence 356667666666653
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVE 269 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg 269 (479)
..+..+.+|.+||.++..+|+|++|+.+|++||.|.+....
T Consensus 67 ---l~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~~ 107 (201)
T d2c2la1 67 ---LDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107 (201)
T ss_dssp ---SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred ---hCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH
Confidence 34677899999999999999999999999999999987543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.26 E-value=2.6e-11 Score=101.76 Aligned_cols=114 Identities=19% Similarity=0.154 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..|..+|..++..|+|++|+.+|.+++++ .|..+.+|+++|.+|+.+
T Consensus 2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~--------~p~~~~~~~~~a~~~~~~----------------------- 50 (117)
T d1elwa_ 2 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--------DPHNHVLYSNRSAAYAKK----------------------- 50 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCcchhhhhccccccccc-----------------------
Confidence 4678999999999999999999999999998 899999999999999986
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++++.|...+..++.+.
T Consensus 51 --------------------------------------------------------------~~~~~A~~~~~~al~~~- 67 (117)
T d1elwa_ 51 --------------------------------------------------------------GDYQKAYEDGCKTVDLK- 67 (117)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHHHC-
T ss_pred --------------------------------------------------------------ccccccchhhhhHHHhc-
Confidence 35667888888777652
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+....+|.+||.++..+|+|++|+.+|++++.+. |+++ .++..|+.+.
T Consensus 68 ------p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-----p~~~---~~~~~l~~l~ 115 (117)
T d1elwa_ 68 ------PDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHE-----ANNP---QLKEGLQNME 115 (117)
T ss_dssp ------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----TTCH---HHHHHHHHHH
T ss_pred ------cchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHh
Confidence 3567899999999999999999999999999763 3443 5566665554
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.25 E-value=2.8e-10 Score=105.57 Aligned_cols=152 Identities=16% Similarity=0.058 Sum_probs=131.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCC-CChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGE-LALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge-~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
+....-+|..++..|+|++|+.+|.+||++. .+ ..+..+.+|+.+|.+++.+
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~----~~~~~~~~~~a~~~lg~~~~~~----------------------- 64 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEEL----PPGWFYSRIVATSVLGEVLHCK----------------------- 64 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----CTTCHHHHHHHHHHHHHHHHHH-----------------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC----cCCCcHHHHHHHHHHHHHHHHC-----------------------
Confidence 4455557999999999999999999999863 22 2344577899999999876
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++++.|+..|+.++.+..
T Consensus 65 --------------------------------------------------------------g~~~~A~~~~~~a~~~~~ 82 (366)
T d1hz4a_ 65 --------------------------------------------------------------GELTRSLALMQQTEQMAR 82 (366)
T ss_dssp --------------------------------------------------------------TCHHHHHHHHHHHHHHHH
T ss_pred --------------------------------------------------------------CCHHHHHHHHHHHHHHHH
Confidence 467889999999999987
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
+.. .....+.++..++.++...++|..|+..|.+++.+......+.++..+.+++.+|.+|...++++.|+.+|++++.
T Consensus 83 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~ 161 (366)
T d1hz4a_ 83 QHD-VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIE 161 (366)
T ss_dssp HTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 764 3567789999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HHH
Q 011692 305 VCK 307 (479)
Q Consensus 305 I~k 307 (479)
+..
T Consensus 162 ~~~ 164 (366)
T d1hz4a_ 162 VLS 164 (366)
T ss_dssp HTT
T ss_pred Hhh
Confidence 643
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.23 E-value=1e-10 Score=102.67 Aligned_cols=67 Identities=16% Similarity=0.073 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
.+.+|.+||.+|+.+++|++|+.+|++||.+.. .-+.+||++|.||..+|+|++|+.+|++++.+..
T Consensus 66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p--------~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P 132 (153)
T d2fbna1 66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDK--------NNVKALYKLGVANMYFGFLEEAKENLYKAASLNP 132 (153)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred HHHHHhhHHHHHHHhcccchhhhhhhccccccc--------hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 346899999999999999999999999998843 3358999999999999999999999999998854
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.1e-10 Score=110.80 Aligned_cols=143 Identities=13% Similarity=0.122 Sum_probs=115.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+..+|..++.+|+|++|+.+|.+++.+ +|.++.+|+.+|.+|+.+
T Consensus 172 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~lg~~~~~~------------------------ 219 (323)
T d1fcha_ 172 PDVQCGLGVLFNLSGEYDKAVDCFTAALSV--------RPNDYLLWNKLGATLANG------------------------ 219 (323)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT------------------------
T ss_pred cccchhhHHHHHHHHHHhhhhccccccccc--------ccccccchhhhhhccccc------------------------
Confidence 345778899999999999999999999987 789999999999999875
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
++++.|.+.|+.++.+
T Consensus 220 -------------------------------------------------------------g~~~~A~~~~~~al~~--- 235 (323)
T d1fcha_ 220 -------------------------------------------------------------NQSEEAVAAYRRALEL--- 235 (323)
T ss_dssp -------------------------------------------------------------TCHHHHHHHHHHHHHH---
T ss_pred -------------------------------------------------------------ccchhHHHHHHHHHHH---
Confidence 3567788888877764
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD---SRHIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d---~r~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
.+..+.+|.+||.++..+|+|++|+..|++||+|.+...+.. ......++.+|+.++..+++.+.+.....+.
T Consensus 236 ----~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~~~~~ 311 (323)
T d1fcha_ 236 ----QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 311 (323)
T ss_dssp ----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred ----hhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 245688999999999999999999999999999998765432 3334456788999999999998887777777
Q ss_pred HHHHHH
Q 011692 303 ISVCKS 308 (479)
Q Consensus 303 L~I~k~ 308 (479)
|..+..
T Consensus 312 l~~l~~ 317 (323)
T d1fcha_ 312 LSTLLT 317 (323)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 765533
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.19 E-value=1.5e-10 Score=110.58 Aligned_cols=155 Identities=12% Similarity=0.036 Sum_probs=129.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 65 FADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 65 ~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
.+..|.++|..+..+|+|++|+.+|.+|++++... | .....+.+++.+|.+|+..
T Consensus 76 ~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~-~-~~~~~~~~~~~l~~~~~~~----------------------- 130 (290)
T d1qqea_ 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR-G-QFRRGANFKFELGEILEND----------------------- 130 (290)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-T-CHHHHHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhc-c-cchhHHHHHHHHHHhHhhH-----------------------
Confidence 46788999999999999999999999999998664 3 3456678888888887542
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
.++++.|.++|+.|..++.
T Consensus 131 -------------------------------------------------------------~~~~~~A~~~~~~A~~l~~ 149 (290)
T d1qqea_ 131 -------------------------------------------------------------LHDYAKAIDCYELAGEWYA 149 (290)
T ss_dssp -------------------------------------------------------------TCCHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------HHHHHHHHHHHHHHHHHHH
Confidence 1578899999999999998
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
+.. .....+.+|.+||.++..+|+|++|+..|++++.+..... ..+......++++|++|...+++..|..+|++++.
T Consensus 150 ~~~-~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~ 227 (290)
T d1qqea_ 150 QDQ-SVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR-LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (290)
T ss_dssp HTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT-TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred hcC-chhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch-hhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 753 3456789999999999999999999999999998866542 23556778889999999999999999999999987
Q ss_pred HHH
Q 011692 305 VCK 307 (479)
Q Consensus 305 I~k 307 (479)
+..
T Consensus 228 ~~~ 230 (290)
T d1qqea_ 228 EDP 230 (290)
T ss_dssp C--
T ss_pred hCC
Confidence 754
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=6.9e-11 Score=115.35 Aligned_cols=50 Identities=12% Similarity=-0.030 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 011692 64 EFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYK 121 (479)
Q Consensus 64 ~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ 121 (479)
..+..+..+|..+..++.|++|+.+|.+|+++ .|+...+|++.|.+|..+
T Consensus 41 ~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--------nP~~~~a~~~r~~~l~~l 90 (315)
T d2h6fa1 41 KFRDVYDYFRAVLQRDERSERAFKLTRDAIEL--------NAANYTVWHFRRVLLKSL 90 (315)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH--------CCCChHHHHHHHHHHHHh
Confidence 45666777899999999999999999999999 899999999999999876
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.17 E-value=2.9e-10 Score=96.73 Aligned_cols=91 Identities=24% Similarity=0.262 Sum_probs=81.5
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|+.|+++|..|+.+ .+..+.+|.+||.+|..+|+|++|+.+|++||.+.+... ..+..++.+|++||.++
T Consensus 18 ~~y~~Ai~~y~~al~~-------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 18 KDFDTALKHYDKAKEL-------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-EDYRQIAKAYARIGNSY 89 (128)
T ss_dssp TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH-HHHHHHHHHHHHHHHHH
Confidence 5788899888888876 234678999999999999999999999999999998865 45778999999999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
..+++|++|+.+|++++..
T Consensus 90 ~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999976
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=1.4e-10 Score=106.40 Aligned_cols=85 Identities=12% Similarity=0.050 Sum_probs=73.8
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|.+.|+.|+.+ .|+.+.+|++||.++..+|+|++|+.+|+++|.+.+. .+.+|++||.+|
T Consensus 51 g~~~~A~~~~~~al~l-------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--------~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 51 GLRALARNDFSQALAI-------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--------YNYAHLNRGIAL 115 (259)
T ss_dssp TCHHHHHHHHHHHHHH-------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhhcc-------CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh--------hhhhHHHHHHHH
Confidence 4577788888888766 3456889999999999999999999999999998533 257999999999
Q ss_pred HcCCChhHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~ 306 (479)
..+|++++|+.+|+++|.+.
T Consensus 116 ~~~g~~~~A~~~~~~al~~~ 135 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDD 135 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHHhhHHHHHHHHHHHHhhc
Confidence 99999999999999999764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=3.8e-10 Score=100.59 Aligned_cols=65 Identities=15% Similarity=0.004 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
+.+|.+||.+|+.+|+|++|+.+|+++|.+. |.-+.+|+++|.||..+|+|++|+.+|++++.+-
T Consensus 62 ~~~~~nla~~y~k~~~~~~A~~~~~~al~~~--------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 126 (170)
T d1p5qa1 62 LASHLNLAMCHLKLQAFSAAIESCNKALELD--------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY 126 (170)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhhhhcccccchhhhhhhcc--------ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 3467788888888888888888888888873 2235778888888888888888888888887763
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.12 E-value=5.6e-10 Score=98.64 Aligned_cols=130 Identities=16% Similarity=0.141 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC--------CCChhHHHHHHHHHHHHHhhhhccCCcCCC
Q 011692 60 EKTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYG--------ELALECVNAYYQYGRALLYKAQEEADPLVS 131 (479)
Q Consensus 60 ~~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~G--------e~~pe~A~~y~~YG~ALl~~ar~esdvLG~ 131 (479)
...+..+..+..+|..++..|+|.+|+++|.+|+.+...... ...|..+.+|+++|.+++.+
T Consensus 21 ~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~---------- 90 (169)
T d1ihga1 21 DKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKM---------- 90 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhh----------
Confidence 456677889999999999999999999999999987654332 23577888999999888875
Q ss_pred CCCCcCCCCCCCCCccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHH
Q 011692 132 VPKKEGDSQQGSDKDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDL 211 (479)
Q Consensus 132 ~~~~~~e~~~~~~~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~ 211 (479)
++++.
T Consensus 91 ---------------------------------------------------------------------------~~~~~ 95 (169)
T d1ihga1 91 ---------------------------------------------------------------------------SDWQG 95 (169)
T ss_dssp ---------------------------------------------------------------------------TCHHH
T ss_pred ---------------------------------------------------------------------------cccch
Confidence 34666
Q ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcC
Q 011692 212 AWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIG 289 (479)
Q Consensus 212 Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~ 289 (479)
|...+..|+.+ .+..+.+|+++|.++..+|+|++|+.+|++||+|.. ++ ..++..|+.++...
T Consensus 96 Ai~~~~~al~~-------~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-----~n---~~~~~~l~~~~~~l 158 (169)
T d1ihga1 96 AVDSCLEALEI-------DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-----ED---KAIQAELLKVKQKI 158 (169)
T ss_dssp HHHHHHHHHTT-------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC---HHHHHHHHHHHHHH
T ss_pred hhhhhhhhhhh-------hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-----CC---HHHHHHHHHHHHHH
Confidence 77666666543 456788999999999999999999999999999743 33 24566666665443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.10 E-value=7.8e-10 Score=98.02 Aligned_cols=65 Identities=15% Similarity=0.046 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+.+|.+||.+|+.+++|++|+.+|+++|.+.. .-..+||++|.||..+|+|++|+.+|+++|.+
T Consensus 63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p--------~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDS--------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhHHHHHHHhhhcccchhhhhhhhhccc--------chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355778888888888888888888888887732 23578888888888888888888888888876
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=3.8e-10 Score=106.34 Aligned_cols=167 Identities=17% Similarity=0.110 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCC
Q 011692 66 ADELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 66 A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~ 145 (479)
+..+..+|..+...++|++|..+|.+++++ +|....+|+.+|.+++..++.+..+--. .
T Consensus 169 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~l~~~~~~~~~~~~A~~~~--~----------- 227 (388)
T d1w3ba_ 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--------DPNFLDAYINLGNVLKEARIFDRAVAAY--L----------- 227 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHTTTCTTHHHHHH--H-----------
T ss_pred hHHHHhhcccccccCcHHHHHHHHHHHHHh--------CcccHHHHHHHhhhhhccccHHHHHHHH--H-----------
Confidence 677888999999999999999999999997 7999999999999999875442210000 0
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEK 225 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek 225 (479)
... ..++... ..- -..+..-...++++.|.++|+.|+.+
T Consensus 228 --~~~-~~~~~~~-----------------~~~------------------~~l~~~~~~~~~~~~A~~~~~~al~~--- 266 (388)
T d1w3ba_ 228 --RAL-SLSPNHA-----------------VVH------------------GNLACVYYEQGLIDLAIDTYRRAIEL--- 266 (388)
T ss_dssp --HHH-HHCTTCH-----------------HHH------------------HHHHHHHHHTTCHHHHHHHHHHHHHT---
T ss_pred --HhH-HHhhhHH-----------------HHH------------------HHHHHHHHHCCCHHHHHHHHHHHHHh---
Confidence 000 0000000 000 00000001224566666666655543
Q ss_pred hcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 226 HWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 226 ~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
.+...++|..||.++...+++++|+..|++++.+.. ..+..++.+|.+|...|++++|+.+|+++|++
T Consensus 267 ----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 334 (388)
T d1w3ba_ 267 ----QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP--------THADSLNNLANIKREQGNIEEAVRLYRKALEV 334 (388)
T ss_dssp ----CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS
T ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC--------ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 456788999999999999999999999999887643 33588999999999999999999999999875
Q ss_pred H
Q 011692 306 C 306 (479)
Q Consensus 306 ~ 306 (479)
.
T Consensus 335 ~ 335 (388)
T d1w3ba_ 335 F 335 (388)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=4.2e-10 Score=99.64 Aligned_cols=86 Identities=21% Similarity=0.111 Sum_probs=75.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|+.|...|..|+.+ .|..+.+|.+||.+|+.+|+|++|+.+|++||.|. |..+.+|++||.+|
T Consensus 18 g~~~~Ai~~~~kal~~-------~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~--------p~~~~a~~~lg~~~ 82 (201)
T d2c2la1 18 RKYPEAAACYGRAITR-------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD--------GQSVKAHFFLGQCQ 82 (201)
T ss_dssp TCHHHHHHHHHHHHHH-------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--------TTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh-------CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC--------CCcHHHHHHHHHHH
Confidence 6788888888888866 34578999999999999999999999999999873 33468999999999
Q ss_pred HcCCChhHHHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I~k 307 (479)
..+|+|++|+.+|++|+.+..
T Consensus 83 ~~l~~~~~A~~~~~~al~l~p 103 (201)
T d2c2la1 83 LEMESYDEAIANLQRAYSLAK 103 (201)
T ss_dssp HHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCc
Confidence 999999999999999998764
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=2.7e-10 Score=97.28 Aligned_cols=100 Identities=14% Similarity=0.092 Sum_probs=80.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccc
Q 011692 71 EKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVK 150 (479)
Q Consensus 71 ~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~ 150 (479)
++.+.++..++|++|.+.|.+||.+ .|....++|+||++|+...
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--------~p~~~~~~~n~a~~L~~s~---------------------------- 47 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTR---------------------------- 47 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--------SCCCHHHHHHHHHHHTTSS----------------------------
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhc----------------------------
Confidence 4566888999999999999999999 8999999999999997530
Q ss_pred cccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCc
Q 011692 151 NAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDS 230 (479)
Q Consensus 151 ~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~ 230 (479)
..++++.|..+|+.++.+ +..
T Consensus 48 ------------------------------------------------------~~~d~~~Ai~~l~~~l~~-----~~~ 68 (122)
T d1nzna_ 48 ------------------------------------------------------YNDDIRKGIVLLEELLPK-----GSK 68 (122)
T ss_dssp ------------------------------------------------------SHHHHHHHHHHHHHHTTT-----SCH
T ss_pred ------------------------------------------------------chHHHHHHHHHHHHHHhc-----cCC
Confidence 114566666665554421 123
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
+..+++|++||.+|..+|+|++|+.+|+++|+|.+
T Consensus 69 ~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P 103 (122)
T d1nzna_ 69 EEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 103 (122)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCc
Confidence 55688999999999999999999999999999853
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=5.1e-09 Score=96.81 Aligned_cols=77 Identities=5% Similarity=-0.073 Sum_probs=69.7
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH
Q 011692 230 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 230 ~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
......++.+||.+++..|+|++|+..|++++.+.+.. ..++..+.+|+.||.+|..+|++++|+.+|++||.+...
T Consensus 247 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~ 323 (366)
T d1hz4a_ 247 NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSL--RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR 323 (366)
T ss_dssp CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhc--ccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence 34567889999999999999999999999999999875 467889999999999999999999999999999998653
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.8e-09 Score=105.04 Aligned_cols=134 Identities=7% Similarity=-0.038 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCC
Q 011692 66 ADELMEKGTNALKES-DYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSD 144 (479)
Q Consensus 66 A~~L~~~G~~~~~~g-dyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~ 144 (479)
...+..+|..+...+ +|++|+.+|.+++++ +|.+..+|++.|.++..+++
T Consensus 77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--------~p~~~~a~~~~~~~~~~l~~--------------------- 127 (315)
T d2h6fa1 77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--------QPKNYQVWHHRRVLVEWLRD--------------------- 127 (315)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHTC---------------------
T ss_pred hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--------HHhhhhHHHHHhHHHHhhcc---------------------
Confidence 557789999988876 699999999999999 89999999999999987621
Q ss_pred CccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHH
Q 011692 145 KDDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 145 ~de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
++.|++.+..|+.+
T Consensus 128 ----------------------------------------------------------------~~eAl~~~~kal~~-- 141 (315)
T d2h6fa1 128 ----------------------------------------------------------------PSQELEFIADILNQ-- 141 (315)
T ss_dssp ----------------------------------------------------------------CTTHHHHHHHHHHH--
T ss_pred ----------------------------------------------------------------HHHHHHHHhhhhhh--
Confidence 22366667766654
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCC------hhHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSK------PQEAIPY 298 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~------~eeAi~~ 298 (479)
.+....+|.++|.++...++|++|+.+|+++|.+.... ..+|+++|.++...++ +++|+.+
T Consensus 142 -----dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n--------~~a~~~r~~~l~~~~~~~~~~~~~~ai~~ 208 (315)
T d2h6fa1 142 -----DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN--------NSVWNQRYFVISNTTGYNDRAVLEREVQY 208 (315)
T ss_dssp -----CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTC--------HHHHHHHHHHHHHTTCSCSHHHHHHHHHH
T ss_pred -----hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCcc--------HHHHHHHHHHHHHccccchhhhhHHhHHH
Confidence 34567899999999999999999999999999985433 5899999999998887 4689999
Q ss_pred HHHHHHHHH
Q 011692 299 CQKAISVCK 307 (479)
Q Consensus 299 ~ekAL~I~k 307 (479)
|.++|.+..
T Consensus 209 ~~~al~~~P 217 (315)
T d2h6fa1 209 TLEMIKLVP 217 (315)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHhCC
Confidence 999988754
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=3e-09 Score=94.59 Aligned_cols=70 Identities=20% Similarity=0.264 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH
Q 011692 217 DVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee 294 (479)
+.|+..+.+.+...|..+.+|..+|.++..+|+|++|+.+|++||.+. |+++ .++..|+.++.....+.+
T Consensus 79 ~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-----P~n~---~~~~~l~~~~~~~~~~~~ 148 (170)
T d1p5qa1 79 SAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-----PNNK---AAKTQLAVCQQRIRRQLA 148 (170)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSCH---HHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-----CCCH---HHHHHHHHHHHHHHHHHH
Confidence 555666666655567789999999999999999999999999999973 3443 556667777765554443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.95 E-value=1.9e-09 Score=95.10 Aligned_cols=93 Identities=13% Similarity=0.069 Sum_probs=78.4
Q ss_pred cChHHHHHHHHHHHHHHHHHhcC---------CcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 011692 206 ESDLDLAWKMLDVARAIAEKHWG---------DSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIA 276 (479)
Q Consensus 206 ~~dle~Awe~Le~Ar~Iyek~~~---------~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iA 276 (479)
.++|..|++.|..|+.++..... ..+..+.+|.+||.+++.+++|++|+.+|.+||++. |.-+
T Consensus 40 ~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~--------p~~~ 111 (169)
T d1ihga1 40 SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--------PSNT 111 (169)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--------TTCH
T ss_pred cCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhh--------hhhh
Confidence 36788888888888876644321 135578899999999999999999999999999874 3336
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 277 ELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 277 ea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
.+|+++|.+|..+++|++|+.+|++||++-
T Consensus 112 ~a~~~~g~~~~~l~~~~~A~~~~~~al~l~ 141 (169)
T d1ihga1 112 KALYRRAQGWQGLKEYDQALADLKKAQEIA 141 (169)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hHHHhHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 899999999999999999999999999984
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.93 E-value=3.5e-09 Score=87.86 Aligned_cols=94 Identities=23% Similarity=0.247 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcc
Q 011692 68 ELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDD 147 (479)
Q Consensus 68 ~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de 147 (479)
..+.+|..++..|+|.+|+.+|++++.+ .|..+.+|+++|.+++..
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--------~p~~~~a~~~lg~~~~~~-------------------------- 63 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQK--------EPEREEAWRSLGLTQAEN-------------------------- 63 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH--------STTCHHHHHHHHHHHHHT--------------------------
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhccc--------ccccchhhhhhhhhhhhh--------------------------
Confidence 4578999999999999999999999998 799999999999999875
Q ss_pred ccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhc
Q 011692 148 SVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHW 227 (479)
Q Consensus 148 ~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~ 227 (479)
++++.|...|+.|+.+
T Consensus 64 -----------------------------------------------------------~~~~~A~~~~~~al~~----- 79 (112)
T d1hxia_ 64 -----------------------------------------------------------EKDGLAIIALNHARML----- 79 (112)
T ss_dssp -----------------------------------------------------------TCHHHHHHHHHHHHHH-----
T ss_pred -----------------------------------------------------------hhHHHhhccccccccc-----
Confidence 3566788888877765
Q ss_pred CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 011692 228 GDSMEKVDILSALAEVALEREDIETSLSDYQKAL 261 (479)
Q Consensus 228 ~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL 261 (479)
.|..+.+|..||.+|..+|++++|+..|++.|
T Consensus 80 --~p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 80 --DPKDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp --CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --ccccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 35678999999999999999999999999876
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=2.1e-09 Score=86.98 Aligned_cols=71 Identities=13% Similarity=0.032 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
++-++.||.++.++|+|.+|+..|++||++..... ..++..+.+|++||.||...|+|++|+.+|+++|++
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~-~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGE-ISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-CCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhh-ccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 56678999999999999999999999999988653 345567899999999999999999999999999987
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.92 E-value=1.4e-08 Score=89.67 Aligned_cols=30 Identities=17% Similarity=0.353 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 276 AELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 276 Aea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
+.+|+|||.||..+++|++|+.+|+++|.+
T Consensus 64 ~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l 93 (168)
T d1kt1a1 64 LAAFLNLAMCYLKLREYTKAVECCDKALGL 93 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence 345556666666666666666666666655
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=5.3e-09 Score=91.13 Aligned_cols=84 Identities=15% Similarity=0.089 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|+.|.+.|..|+.+ .+..+.+|++||.+++.+|++++|+.+|++||++... -+.+|+++|.+|
T Consensus 24 ~~y~~A~~~~~~al~~-------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~--------~~~a~~~~g~~~ 88 (159)
T d1a17a_ 24 KDYENAIKFYSQAIEL-------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--------YIKGYYRRAASN 88 (159)
T ss_dssp TCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHH
T ss_pred CCHHHHHHHhhhcccc-------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc--------chHHHHHHHHHH
Confidence 5677888888877765 3467899999999999999999999999999999543 358899999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
..+|+|++|+.+|++++.+
T Consensus 89 ~~~g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 89 MALGKFRAALRDYETVVKV 107 (159)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHc
Confidence 9999999999999999976
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.90 E-value=4.8e-10 Score=97.85 Aligned_cols=114 Identities=9% Similarity=-0.017 Sum_probs=85.3
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCccccccccC
Q 011692 75 NALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKNAVN 154 (479)
Q Consensus 75 ~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~~~~ 154 (479)
.+-.++.|++|+.+|++|+++ .|..+++|+++|.+|+.+++....
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~--------~P~~~~~~~~~g~~l~~~~~~~~~--------------------------- 50 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKS--------NPLDADNLTRWGGVLLELSQFHSI--------------------------- 50 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHHHHHSCH---------------------------
T ss_pred HHHHHccHHHHHHHHHHHHhh--------CCcchHHHHHHHHHHHHhhhhhhh---------------------------
Confidence 345667799999999999999 899999999999999988544110
Q ss_pred CCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcchHH
Q 011692 155 GESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSMEKV 234 (479)
Q Consensus 155 ~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~~~A 234 (479)
.+....|+.|.+.|+.|+.| .|..+
T Consensus 51 ------------------------------------------------~e~~~~~~~Ai~~~~kAl~l-------~P~~~ 75 (145)
T d1zu2a1 51 ------------------------------------------------SDAKQMIQEAITKFEEALLI-------DPKKD 75 (145)
T ss_dssp ------------------------------------------------HHHHHHHHHHHHHHHHHHHH-------CTTCH
T ss_pred ------------------------------------------------hHHHHHHHHHHHHHHHHHHh-------cchhh
Confidence 01124566666666666654 46778
Q ss_pred HHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 235 DILSALAEVALERED-----------IETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 235 ~v~~~LGev~le~g~-----------yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
.+|.+||.+|.++|+ |++|+.+|++||.+.+. ....+..|+++.
T Consensus 76 ~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~--------~~~~~~~L~~~~ 130 (145)
T d1zu2a1 76 EAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD--------NTHYLKSLEMTA 130 (145)
T ss_dssp HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC--------HHHHHHHHHHHH
Confidence 899999999988764 67888888888877532 246777788876
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.90 E-value=1.9e-09 Score=90.08 Aligned_cols=84 Identities=14% Similarity=0.091 Sum_probs=73.9
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|+.|..+|..++.+ .+..+.+|.++|.+++.+|+|++|+.+|.+++.+... .+.+|+++|.+|
T Consensus 17 g~~~eAi~~~~~al~~-------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--------~~~~~~~~g~~~ 81 (117)
T d1elwa_ 17 GNIDDALQCYSEAIKL-------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--------WGKGYSRKAAAL 81 (117)
T ss_dssp TCHHHHHHHHHHHHHH-------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc-------CCcchhhhhcccccccccccccccchhhhhHHHhccc--------hhhHHHHHHHHH
Confidence 6888888888888754 3456889999999999999999999999999998543 358999999999
Q ss_pred HcCCChhHHHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL~I 305 (479)
..+|+|++|+.+|++++.+
T Consensus 82 ~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 82 EFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 9999999999999999965
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=1.1e-08 Score=92.62 Aligned_cols=106 Identities=18% Similarity=0.145 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCc
Q 011692 67 DELMEKGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKD 146 (479)
Q Consensus 67 ~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~d 146 (479)
..++++|..++.+|+|++|+++|.+|+++ .|..+.+|+++|.+++.+
T Consensus 37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--------dp~~~~a~~~~g~~~~~~------------------------- 83 (192)
T d1hh8a_ 37 RICFNIGCMYTILKNMTEAEKAFTRSINR--------DKHLAVAYFQRGMLYYQT------------------------- 83 (192)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------CTTCHHHHHHHHHHHHHT-------------------------
T ss_pred HHHHHHHHHHHHcCCchhHHHHHHHHHHH--------hhhhhhhHHHHHHHHHhh-------------------------
Confidence 45899999999999999999999999998 799999999999999886
Q ss_pred cccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHh
Q 011692 147 DSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKH 226 (479)
Q Consensus 147 e~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~ 226 (479)
++++.|+..|+.|+.+....
T Consensus 84 ------------------------------------------------------------g~~~~A~~~~~kAl~~~~~n 103 (192)
T d1hh8a_ 84 ------------------------------------------------------------EKYDLAIKDLKEALIQLRGN 103 (192)
T ss_dssp ------------------------------------------------------------TCHHHHHHHHHHHHHTTTTC
T ss_pred ------------------------------------------------------------ccHHHHHHHHHHHHHhCccC
Confidence 35667777777777654322
Q ss_pred c---------CCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 011692 227 W---------GDSMEKVDILSALAEVALEREDIETSLSDYQKALTILE 265 (479)
Q Consensus 227 ~---------~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~ 265 (479)
. ...+...++++++|.++..+++|++|+..|.+|+.+..
T Consensus 104 ~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 104 QLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp SEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred chHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 1 11234578999999999999999999999999988754
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.78 E-value=5e-09 Score=86.92 Aligned_cols=82 Identities=10% Similarity=0.035 Sum_probs=70.1
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
+++..|...|+.++.+ .+..+.+|..||.++...++|++|+.+|++||.+.. .-+.+|++||.+|
T Consensus 30 g~~~~A~~~~~~al~~-------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--------~~~~a~~~la~~y 94 (112)
T d1hxia_ 30 ANLAEAALAFEAVCQK-------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--------KDIAVHAALAVSH 94 (112)
T ss_dssp TCHHHHHHHHHHHHHH-------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TCHHHHHHHHHHH
T ss_pred hhhHHHHHHHhhhccc-------ccccchhhhhhhhhhhhhhhHHHhhccccccccccc--------ccccchHHHHHHH
Confidence 5666777666666654 345689999999999999999999999999999853 3369999999999
Q ss_pred HcCCChhHHHHHHHHHH
Q 011692 287 EIGSKPQEAIPYCQKAI 303 (479)
Q Consensus 287 ~~~g~~eeAi~~~ekAL 303 (479)
..+|++++|+++|++.|
T Consensus 95 ~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 99999999999999976
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.77 E-value=1.7e-08 Score=85.83 Aligned_cols=89 Identities=10% Similarity=0.040 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHcCCCh
Q 011692 214 KMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD-SRHIAELNFRICLCLEIGSKP 292 (479)
Q Consensus 214 e~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d-~r~iAea~~~LG~ay~~~g~~ 292 (479)
+-|+.|..+|++.+...+...++++++|.+++..++.. ++++|+.++++.+..+ .+..+++||+||.+|..+|+|
T Consensus 13 ~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~----d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~ 88 (122)
T d1nzna_ 13 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYND----DIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEY 88 (122)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHH----HHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchH----HHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhh
Confidence 44555666666665545678899999999998765543 3344444444444333 344578999999999999999
Q ss_pred hHHHHHHHHHHHHH
Q 011692 293 QEAIPYCQKAISVC 306 (479)
Q Consensus 293 eeAi~~~ekAL~I~ 306 (479)
++|+.+|+++|.+-
T Consensus 89 ~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 89 EKALKYVRGLLQTE 102 (122)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999999873
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=1.6e-08 Score=81.73 Aligned_cols=74 Identities=18% Similarity=0.149 Sum_probs=64.0
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++|..|...|+.|+.++..........+++|.+||.++..+|+|++|+.+|+++|+|. |+| ..+++||+...
T Consensus 19 g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-----P~~---~~a~~Nl~~~~ 90 (95)
T d1tjca_ 19 ADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-----PEH---QRANGNLKYFE 90 (95)
T ss_dssp TCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC---HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-----cCC---HHHHHHHHHHH
Confidence 5799999999999999988776667889999999999999999999999999999984 344 47889987765
Q ss_pred Hc
Q 011692 287 EI 288 (479)
Q Consensus 287 ~~ 288 (479)
..
T Consensus 91 ~~ 92 (95)
T d1tjca_ 91 YI 92 (95)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.70 E-value=5.8e-08 Score=87.65 Aligned_cols=70 Identities=10% Similarity=0.064 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHH
Q 011692 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSR 309 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~r 309 (479)
....++.+++.+++.+|+|++|+.+|+++|.+.... ..+|++|+.+|...|++.+|+.+|+++..++...
T Consensus 65 ~~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~--------e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~e 134 (179)
T d2ff4a2 65 DKVLAHTAKAEAEIACGRASAVIAELEALTFEHPYR--------EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADD 134 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC--------HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCcc--------HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 457899999999999999999999999999985433 4899999999999999999999999998776544
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=2e-08 Score=103.65 Aligned_cols=65 Identities=17% Similarity=0.180 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVC 306 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~ 306 (479)
..++.+||+++..+++|++|+.+|++|+.+.. ..+.+|++||.+|...|++.+|+.||.+||.+.
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P--------~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~ 216 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVP--------SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--------TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--------CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 46899999999999999999999999999954 346999999999999999999999999999764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.55 E-value=2.4e-08 Score=86.76 Aligned_cols=90 Identities=20% Similarity=0.147 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 011692 213 WKMLDVARAIAEKHWGDSMEKVDILSALAEVALER----------EDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 282 (479)
Q Consensus 213 we~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~----------g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~L 282 (479)
..+|+.|+..|++.+...|..+++|+++|.+++.. ++|++|+.+|++||+|.. .-+.+|++|
T Consensus 10 ~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P--------~~~~a~~~l 81 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--------KKDEAVWCI 81 (145)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--------TCHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc--------hhhHHHhhH
Confidence 44566666666666555678899999999999865 556889999999998843 336899999
Q ss_pred HHHHHcCCC----hhHHHHHHHHHHHHHHHHH
Q 011692 283 CLCLEIGSK----PQEAIPYCQKAISVCKSRV 310 (479)
Q Consensus 283 G~ay~~~g~----~eeAi~~~ekAL~I~k~rl 310 (479)
|.+|..+|+ ...+...|++|+..+++-|
T Consensus 82 G~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal 113 (145)
T d1zu2a1 82 GNAYTSFAFLTPDETEAKHNFDLATQFFQQAV 113 (145)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcccchhhHHHHHHhHHHhhhhhhccc
Confidence 999987653 3444455555555444433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.45 E-value=5.2e-08 Score=93.48 Aligned_cols=66 Identities=11% Similarity=-0.068 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
...+..+|.++...+++.+|+..|.+++.+ +|..+.+|+.||.+|...|++++|+.+|++|+++-.
T Consensus 242 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP 307 (334)
T d1dcea1 242 LFRCELSVEKSTVLQSELESCKELQELEPE--------NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 307 (334)
T ss_dssp SSSCCCCHHHHHHHHHHHHHHHHHHHHCTT--------CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHHhh--------CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 345667888888999999999998887654 556679999999999999999999999999999744
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.36 E-value=6.4e-06 Score=78.43 Aligned_cols=92 Identities=8% Similarity=-0.137 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcCCcchHHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHH
Q 011692 217 DVARAIAEKHWGDSMEKVDI-LSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 295 (479)
Q Consensus 217 e~Ar~Iyek~~~~~~~~A~v-~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeA 295 (479)
+.|+.++.+.+...+....+ +..+|.++...++++.|+..|++++.+. |.-..+|++||.+|...+++++|
T Consensus 126 ~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~--------p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 126 ARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN--------FSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT--------CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHhcCHHHH
Confidence 34555555544323333443 4577788888888888888888777663 33357888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 011692 296 IPYCQKAISVCKSRVQRLLNE 316 (479)
Q Consensus 296 i~~~ekAL~I~k~rl~~l~~~ 316 (479)
+.+|++++.+....+......
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~ 218 (334)
T d1dcea1 198 GPQGRLPENVLLKELELVQNA 218 (334)
T ss_dssp SSCCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhHHHHHHHHHHH
Confidence 888888888888776665543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.18 E-value=2.3e-06 Score=74.03 Aligned_cols=78 Identities=15% Similarity=0.239 Sum_probs=64.6
Q ss_pred chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh--------hHHHHHHHHHHHHHcCCChhHHHHHHHHH
Q 011692 231 MEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSR--------HIAELNFRICLCLEIGSKPQEAIPYCQKA 302 (479)
Q Consensus 231 ~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r--------~iAea~~~LG~ay~~~g~~eeAi~~~ekA 302 (479)
+..|..+...|..++..|+|.+|+..|++||.+.......... ..+.+|+|||.||..+++|++|+.+|++|
T Consensus 14 ~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a 93 (153)
T d2fbna1 14 VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 93 (153)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc
Confidence 3456777889999999999999999999999987655443322 34578999999999999999999999999
Q ss_pred HHHHHH
Q 011692 303 ISVCKS 308 (479)
Q Consensus 303 L~I~k~ 308 (479)
|.+-..
T Consensus 94 l~~~p~ 99 (153)
T d2fbna1 94 LKIDKN 99 (153)
T ss_dssp HHHSTT
T ss_pred ccccch
Confidence 987543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.17 E-value=3.1e-05 Score=70.86 Aligned_cols=63 Identities=13% Similarity=0.117 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc----CCChhHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALE----REDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI----GSKPQEAIPYCQKAIS 304 (479)
Q Consensus 233 ~A~v~~~LGev~le----~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~----~g~~eeAi~~~ekAL~ 304 (479)
.+.++.+||.++.. ..++++|+..|++|.+. .+ +.++|+||.+|.. ..++.+|+.+|++|+.
T Consensus 177 ~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-------g~---~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~ 246 (265)
T d1ouva_ 177 DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-------EN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCK 246 (265)
T ss_dssp CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred ccccccchhhhcccCcccccchhhhhhhHhhhhcc-------cC---HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 36788999999997 67899999999999775 22 5789999999986 4479999999999986
Q ss_pred H
Q 011692 305 V 305 (479)
Q Consensus 305 I 305 (479)
.
T Consensus 247 ~ 247 (265)
T d1ouva_ 247 L 247 (265)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.06 E-value=3.6e-06 Score=86.32 Aligned_cols=69 Identities=13% Similarity=0.045 Sum_probs=52.4
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCL 286 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay 286 (479)
++++.|...|.+|..+ .|..+.+|+.||.++...|++.+|+.+|.+||.+... ...++.||+.+|
T Consensus 166 ~~~~~A~~~y~~A~~l-------~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~--------~~~a~~nL~~~~ 230 (497)
T d1ya0a1 166 NQTSQAESYYRHAAQL-------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP--------FPAASTNLQKAL 230 (497)
T ss_dssp TCHHHHHHHHHHHHHH-------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC--------CHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHH-------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC--------CHHHHHHHHHHH
Confidence 3556666666666554 4677899999999999999999999999999976532 246778888777
Q ss_pred HcCC
Q 011692 287 EIGS 290 (479)
Q Consensus 287 ~~~g 290 (479)
....
T Consensus 231 ~~~~ 234 (497)
T d1ya0a1 231 SKAL 234 (497)
T ss_dssp HHHT
T ss_pred HHhh
Confidence 6543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.97 E-value=2.2e-05 Score=74.69 Aligned_cols=127 Identities=12% Similarity=-0.005 Sum_probs=98.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHHHHhhhhccCCcCCCCCCCcCCCCCCCCCcccccc
Q 011692 72 KGTNALKESDYGEAAECFSRALEIRVSHYGELALECVNAYYQYGRALLYKAQEEADPLVSVPKKEGDSQQGSDKDDSVKN 151 (479)
Q Consensus 72 ~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~pe~A~~y~~YG~ALl~~ar~esdvLG~~~~~~~e~~~~~~~de~~~~ 151 (479)
+++.++.+|+|++|+.+|.++++. +|..+.++++||.+|+..
T Consensus 2 q~~~aL~~G~l~eAl~~l~~al~~--------~P~d~~ar~~La~lL~~~------------------------------ 43 (264)
T d1zbpa1 2 QWKNALSEGQLQQALELLIEAIKA--------SPKDASLRSSFIELLCID------------------------------ 43 (264)
T ss_dssp CHHHHTTTTCHHHHHHHHHHHHHT--------CTTCHHHHHHHHHHHHHH------------------------------
T ss_pred hHHHHHHCCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHC------------------------------
Confidence 467789999999999999999998 899999999999999876
Q ss_pred ccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccccccCcChHHHHHHHHHHHHHHHHHhcCCcc
Q 011692 152 AVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAEADEDESDLDLAWKMLDVARAIAEKHWGDSM 231 (479)
Q Consensus 152 ~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~~~ed~~dle~Awe~Le~Ar~Iyek~~~~~~ 231 (479)
++++.|...|+.++.+ .+
T Consensus 44 -------------------------------------------------------G~~e~A~~~l~~a~~l-------~P 61 (264)
T d1zbpa1 44 -------------------------------------------------------GDFERADEQLMQSIKL-------FP 61 (264)
T ss_dssp -------------------------------------------------------TCHHHHHHHHHHHHHH-------CG
T ss_pred -------------------------------------------------------CCHHHHHHHHHHHHHh-------CC
Confidence 4677788888888765 35
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q 011692 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISV 305 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I 305 (479)
....++..++.++...+.+.++...+.+. .-..++.-...++.++.++...|++++|+.++++++++
T Consensus 62 ~~~~~~~~l~~ll~a~~~~~~a~~~~~~~-------~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 62 EYLPGASQLRHLVKAAQARKDFAQGAATA-------KVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHTTSCCCE-------ECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhccccHHHHHHhhhh-------hcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 66778888888887666555544332211 11223444577888999999999999999999888754
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.59 E-value=0.00014 Score=61.84 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHH
Q 011692 216 LDVARAIAEKHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEA 295 (479)
Q Consensus 216 Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeA 295 (479)
|++.+.-|.+.....+ .+++.++.|.......+. .+.++++.|++.++..+..+-.+++|+||++|.++|+|++|
T Consensus 18 l~~~~~q~~~e~~~~~-s~qt~F~YAw~Lv~S~~~----~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A 92 (124)
T d2pqrb1 18 LEILRQQVVSEGGPTA-TIQSRFNYAWGLIKSTDV----NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMA 92 (124)
T ss_dssp HHHHHHHHHHTTGGGS-CHHHHHHHHHHHHHSSCH----HHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHhCCCC-CcchHHHHHHHHHcCCcH----HHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHH
Confidence 4556666766643222 368999999998877544 23444444444444222223359999999999999999999
Q ss_pred HHHHHHHHHHH
Q 011692 296 IPYCQKAISVC 306 (479)
Q Consensus 296 i~~~ekAL~I~ 306 (479)
+.+|+++|+|-
T Consensus 93 ~~~~~~~L~ie 103 (124)
T d2pqrb1 93 KRYVDTLFEHE 103 (124)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHccC
Confidence 99999999874
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.22 E-value=0.0025 Score=59.63 Aligned_cols=82 Identities=12% Similarity=0.115 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhH
Q 011692 216 LDVARAIAEKHWGDSMEKVDILSALAEVA-LEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQE 294 (479)
Q Consensus 216 Le~Ar~Iyek~~~~~~~~A~v~~~LGev~-le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~ee 294 (479)
++.||.+|.+.....+.....|...+.+. ...++++.|...|+++|.... ++ ...+...+..+...|++++
T Consensus 150 ~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p-----~~---~~~w~~y~~~~~~~g~~~~ 221 (308)
T d2onda1 150 IKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-----DI---PEYVLAYIDYLSHLNEDNN 221 (308)
T ss_dssp HHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-----TC---HHHHHHHHHHHHTTCCHHH
T ss_pred hHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhh-----hh---HHHHHHHHHHHHHcCChHH
Confidence 46677788776655555667788888764 456899999999999998642 22 3666777788889999999
Q ss_pred HHHHHHHHHHH
Q 011692 295 AIPYCQKAISV 305 (479)
Q Consensus 295 Ai~~~ekAL~I 305 (479)
|...|++||..
T Consensus 222 aR~~fe~ai~~ 232 (308)
T d2onda1 222 TRVLFERVLTS 232 (308)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHHh
Confidence 99999999863
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.98 E-value=0.0006 Score=60.47 Aligned_cols=77 Identities=9% Similarity=-0.110 Sum_probs=63.7
Q ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC--------------ChhHHHHHHHHHHHHHcCCChhHHHH
Q 011692 232 EKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPD--------------SRHIAELNFRICLCLEIGSKPQEAIP 297 (479)
Q Consensus 232 ~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d--------------~r~iAea~~~LG~ay~~~g~~eeAi~ 297 (479)
.....|...|......|++++|+..|.+||.+.+--+-.+ .+....++++++.+|...|+|++|+.
T Consensus 9 ~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~ 88 (179)
T d2ff4a2 9 GRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIA 88 (179)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHH
Confidence 3456889999999999999999999999999865332111 23456789999999999999999999
Q ss_pred HHHHHHHHHHH
Q 011692 298 YCQKAISVCKS 308 (479)
Q Consensus 298 ~~ekAL~I~k~ 308 (479)
+|+++|.+...
T Consensus 89 ~~~~al~~~P~ 99 (179)
T d2ff4a2 89 ELEALTFEHPY 99 (179)
T ss_dssp HHHHHHHHSTT
T ss_pred HHHHHHHhCCc
Confidence 99999987653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.88 E-value=0.006 Score=56.92 Aligned_cols=168 Identities=10% Similarity=0.061 Sum_probs=100.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhCCCCh-hHHHHHHHHHHHHHhhhhccCC--cCCCCCCCcCCCCCCCCC
Q 011692 69 LMEKGTNALKESDYGEAAECFSRALEIRVSHYGELAL-ECVNAYYQYGRALLYKAQEEAD--PLVSVPKKEGDSQQGSDK 145 (479)
Q Consensus 69 L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~Ge~~p-e~A~~y~~YG~ALl~~ar~esd--vLG~~~~~~~e~~~~~~~ 145 (479)
++..+.....+|+++.|..+|.+++.+ .| ....++..|+..+...+..+.. +|....+.
T Consensus 102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~--------~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~---------- 163 (308)
T d2onda1 102 YFAYADYEESRMKYEKVHSIYNRLLAI--------EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---------- 163 (308)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTS--------SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS----------
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH--------hcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHh----------
Confidence 456677888999999999999999975 33 3345788888888766432211 11110000
Q ss_pred ccccccccCCCCCcccCCCchhhcCCCCCcCccccCCCCCCCCCcccCCCCccccc-cccCcChHHHHHHHHHHHHHHHH
Q 011692 146 DDSVKNAVNGESSTASVSSSAEQHGSSNNQDEAADDAVPGDNEEDEEGNDGENVAE-ADEDESDLDLAWKMLDVARAIAE 224 (479)
Q Consensus 146 de~~~~~~~~e~a~~~~s~~~e~~~~~n~~d~~~~~~~~~ee~e~~e~~~~E~~~~-~~ed~~dle~Awe~Le~Ar~Iye 224 (479)
.+... ..-. ..+. .....++.+.|+.+|+.++..+
T Consensus 164 --------~~~~~------~~~~-----------------------------~~a~~e~~~~~~~~~a~~i~e~~l~~~- 199 (308)
T d2onda1 164 --------ARTRH------HVYV-----------------------------TAALMEYYCSKDKSVAFKIFELGLKKY- 199 (308)
T ss_dssp --------TTCCT------HHHH-----------------------------HHHHHHHHTSCCHHHHHHHHHHHHHHH-
T ss_pred --------CCCcH------HHHH-----------------------------HHHHHHHHhccCHHHHHHHHHHHHHhh-
Confidence 00000 0000 0000 0011245566666666665432
Q ss_pred HhcCCcchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 225 KHWGDSMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 225 k~~~~~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
+.....+...+......|++++|...|++|+.... ..++ .....+.....-....|+.+.+...++++.+
T Consensus 200 ------p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~--~~~~--~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 200 ------GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS--LPPE--KSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp ------TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS--SCGG--GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ------hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC--CChH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34467889999999999999999999999986432 1111 1223344444444566999999998888887
Q ss_pred HHHH
Q 011692 305 VCKS 308 (479)
Q Consensus 305 I~k~ 308 (479)
++..
T Consensus 270 ~~~~ 273 (308)
T d2onda1 270 AFRE 273 (308)
T ss_dssp HTTT
T ss_pred HCcc
Confidence 7653
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.58 E-value=0.0047 Score=51.10 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=61.7
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALE----REDIETSLSDYQKALTILERMVEPDSRHIAELNFRI 282 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le----~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~L 282 (479)
.+++.|+.+|++|-. .....+++.||.+|.. ..++.+|+..|+++.+.- + +.++++|
T Consensus 37 ~~~~~a~~~~~~aa~---------~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-------~---~~a~~~L 97 (133)
T d1klxa_ 37 INKQKLFQYLSKACE---------LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-------D---QDGCLIL 97 (133)
T ss_dssp SCHHHHHHHHHHHHH---------TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-------C---HHHHHHH
T ss_pred cCHHHHHHHHhhhhc---------ccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC-------c---chHHHHH
Confidence 456778877776642 1346788999999986 567899999999987542 2 5789999
Q ss_pred HHHHHc----CCChhHHHHHHHHHHH
Q 011692 283 CLCLEI----GSKPQEAIPYCQKAIS 304 (479)
Q Consensus 283 G~ay~~----~g~~eeAi~~~ekAL~ 304 (479)
|.+|.. ..++.+|+.+|++|.+
T Consensus 98 g~~y~~G~gv~~d~~~A~~~~~~Aa~ 123 (133)
T d1klxa_ 98 GYKQYAGKGVVKNEKQAVKTFEKACR 123 (133)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHcCCccCCCHHHHHHHHHHHHH
Confidence 999987 4589999999999875
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.24 E-value=0.0018 Score=60.88 Aligned_cols=59 Identities=17% Similarity=0.081 Sum_probs=51.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q 011692 241 AEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEIGSKPQEAIPYCQKAISVCK 307 (479)
Q Consensus 241 Gev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k 307 (479)
+...+..|+|++|+..|+++|+..... +.++++||.+|+..|++++|+.+|++++++..
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d--------~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P 61 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKD--------ASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTC--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCC--------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 455778999999999999999885443 69999999999999999999999999998753
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=96.11 E-value=0.0063 Score=54.83 Aligned_cols=61 Identities=15% Similarity=0.176 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHc----CCChhHHHHHHHHHHH
Q 011692 234 VDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRHIAELNFRICLCLEI----GSKPQEAIPYCQKAIS 304 (479)
Q Consensus 234 A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~ay~~----~g~~eeAi~~~ekAL~ 304 (479)
++.++.||..+...++|.+|+.+|++|.++ .+ +.++++||.+|.. ..++..|+.+|+++..
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-------g~---~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~ 66 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL-------KE---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACD 66 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHHHcCCCcchhHHHHHHhhccccc
Confidence 457899999999999999999999999654 22 5789999999987 6688889999988765
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.84 E-value=0.01 Score=49.93 Aligned_cols=60 Identities=10% Similarity=0.152 Sum_probs=48.5
Q ss_pred ChHHHHHHHH--------HHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 011692 207 SDLDLAWKML--------DVARAIAEKHWGDS-MEKVDILSALAEVALEREDIETSLSDYQKALTILER 266 (479)
Q Consensus 207 ~dle~Awe~L--------e~Ar~Iyek~~~~~-~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~ 266 (479)
..|+-||.+. +.++.+++...... ....+|+..||..|..+|+|++|+.+++++|+|...
T Consensus 37 t~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~ 105 (124)
T d2pqrb1 37 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN 105 (124)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 5788898765 56777777665322 356799999999999999999999999999999643
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.28 E-value=0.13 Score=41.92 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=37.2
Q ss_pred ChHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHH
Q 011692 207 SDLDLAWKMLDVARAIAEKHWGDSMEKVDILSALAEVALE----REDIETSLSDYQKALTI 263 (479)
Q Consensus 207 ~dle~Awe~Le~Ar~Iyek~~~~~~~~A~v~~~LGev~le----~g~yeeAl~dy~kAL~I 263 (479)
.|+..|+++|++|-.. ....+++.||.+|.. ..++.+|+..|++|.++
T Consensus 73 ~d~~~A~~~~~~aa~~---------g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 73 KDLRKAAQYYSKACGL---------NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp CCHHHHHHHHHHHHHT---------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hhhHHHHHHHhhhhcc---------CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 3677888888877531 346788999999988 46899999999998764
|
| >d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain family: MIT domain domain: Hypothetical protein 1500032H18Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.16 E-value=0.054 Score=42.87 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHHHHhhhh
Q 011692 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHY-GELALECVNAYYQYGRALLYKAQ 123 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~-Ge~~pe~A~~y~~YG~ALl~~ar 123 (479)
..+..|..|+.++..+-..|+|++|+.+|.+|++++.... .+..+.....|...-.-|+..+.
T Consensus 10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl~RAE 73 (93)
T d1wfda_ 10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAE 73 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999888866 46788888888887777777653
|
| >d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain family: MIT domain domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.12 Score=39.23 Aligned_cols=62 Identities=18% Similarity=0.186 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--hCCCChhHHHHHHHHHHHHHhhh
Q 011692 61 KTVEFADELMEKGTNALKESDYGEAAECFSRALEIRVSH--YGELALECVNAYYQYGRALLYKA 122 (479)
Q Consensus 61 ~~l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~--~Ge~~pe~A~~y~~YG~ALl~~a 122 (479)
..+..|..|+.++..+-..|+|.+|+.+|.+|++.+... +....+..-..+...-.-|+..+
T Consensus 6 ~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~~~l~~e~~~~~~k~~l~~k~~~Yl~RA 69 (77)
T d1wr0a1 6 PNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRA 69 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCCTGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999987664 33456766666666666666554
|
| >d2o8pa1 a.118.7.1 (A:8-227) 14-3-3 domain containing protein cgd7_2470 {Cryptosporidium parvum [TaxId: 5807]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3 domain containing protein cgd7 2470 species: Cryptosporidium parvum [TaxId: 5807]
Probab=92.34 E-value=0.38 Score=43.67 Aligned_cols=79 Identities=14% Similarity=0.035 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDIETSLSDYQKALTILERMVEPDSRH-IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg~d~r~-iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
.++.|.-|+++ ..+.-++|...|++|+.|....++|.||. +..+++.==+-|+.+++.++|+..-++|+..+...|.
T Consensus 124 KGDYyRYlaE~--~~~~~~~a~~aY~~A~~ia~~~l~pt~PirLGLaLN~SVF~yEi~~~~~~A~~lAk~A~~~fdeai~ 201 (220)
T d2o8pa1 124 KSDISRYKLEF--GLCSLEDSKKIHQDAFTLLCEHPDKIEQLPLGFIQNLAYILSEKYGEKKQVFNMLNSLGKILELQIK 201 (220)
T ss_dssp HHHHHHHHHHT--TSSCHHHHHHHHHHHHHHHHHCGGGGGGSCHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHH--hcchHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHH
Confidence 47788888887 46788999999999999999988888887 5444444445567899999999999999877777666
Q ss_pred HH
Q 011692 312 RL 313 (479)
Q Consensus 312 ~l 313 (479)
.|
T Consensus 202 ~l 203 (220)
T d2o8pa1 202 EQ 203 (220)
T ss_dssp HC
T ss_pred Hc
Confidence 54
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.12 E-value=0.3 Score=37.69 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhC
Q 011692 63 VEFADELMEKGTNALKESDYGEAAECFSRALEIRVSHYG 101 (479)
Q Consensus 63 l~~A~~L~~~G~~~~~~gdyeeAve~ys~Alei~~~~~G 101 (479)
|..|..+--++.+++..|+|++|++|+..|+..+.+-+-
T Consensus 5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~k 43 (83)
T d2crba1 5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 577888889999999999999999999999998766553
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.53 E-value=0.52 Score=42.93 Aligned_cols=72 Identities=25% Similarity=0.274 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALEREDI---ETSLSDYQKALTILERMVEPDSRH-IAELNFRICLCLEIGSKPQEAIPYCQKAIS 304 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~y---eeAl~dy~kAL~I~~~llg~d~r~-iAea~~~LG~ay~~~g~~eeAi~~~ekAL~ 304 (479)
.++.|.-|+++....++. ++|...|++|+.+....+++.||. +..+++.=-+-|+..++.++|+..-++|+.
T Consensus 122 kgDy~RY~aE~~~~~e~~~~~~~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd 197 (230)
T d2o02a1 122 KGDYYRYLAEVAAGDDKKGIVDQSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFD 197 (230)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467777788776544433 589999999999999989998887 444444444455688999999888877764
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=88.80 E-value=0.83 Score=41.69 Aligned_cols=79 Identities=23% Similarity=0.265 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH-HHcCCChhHHHHHHHHHHHHHHH
Q 011692 233 KVDILSALAEVALERED---IETSLSDYQKALTILERMVEPDSRHIAELNFRICLC-LEIGSKPQEAIPYCQKAISVCKS 308 (479)
Q Consensus 233 ~A~v~~~LGev~le~g~---yeeAl~dy~kAL~I~~~llg~d~r~iAea~~~LG~a-y~~~g~~eeAi~~~ekAL~I~k~ 308 (479)
.++.|.-|+++....++ -++|...|++|+.|....+++.||.---...|.+.- |+..++.++|+..-++|+.-.-.
T Consensus 127 kgDyyRYlaE~~~~~e~~~~~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~ai~ 206 (236)
T d1o9da_ 127 KGDYHRYLAEFKTGAERKEAAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIA 206 (236)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 47778888888654433 467899999999999998999998744444555544 45789999998888887654333
Q ss_pred HHH
Q 011692 309 RVQ 311 (479)
Q Consensus 309 rl~ 311 (479)
.++
T Consensus 207 ~~d 209 (236)
T d1o9da_ 207 ELD 209 (236)
T ss_dssp HHH
T ss_pred Hhh
Confidence 333
|
| >d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain family: MIT domain domain: Hypothetical protein 1500032H18Rik species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.60 E-value=0.97 Score=35.21 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHH
Q 011692 275 IAELNFRICLCLEIGSKPQEAIPYCQKAISVCKSRVQ 311 (479)
Q Consensus 275 iAea~~~LG~ay~~~g~~eeAi~~~ekAL~I~k~rl~ 311 (479)
-|..+.+.++-+...++|++|+.+|.+||+++...+.
T Consensus 14 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~ 50 (93)
T d1wfda_ 14 AAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLK 50 (93)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhh
Confidence 4555667777788899999999999999998776654
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.98 E-value=0.97 Score=34.69 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=36.0
Q ss_pred cchHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 011692 230 SMEKVDILSALAEVALEREDIETSLSDYQKALTILERMVE 269 (479)
Q Consensus 230 ~~~~A~v~~~LGev~le~g~yeeAl~dy~kAL~I~~~llg 269 (479)
++++|-.|..-++-++..|+|++||+++++|.......+.
T Consensus 4 PLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA~k 43 (83)
T d2crba1 4 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMK 43 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999998887654
|