Citrus Sinensis ID: 011707
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 479 | 2.2.26 [Sep-21-2011] | |||||||
| Q84KI6 | 482 | UDP-sulfoquinovose syntha | N/A | no | 1.0 | 0.993 | 0.771 | 0.0 | |
| O48917 | 477 | UDP-sulfoquinovose syntha | yes | no | 0.989 | 0.993 | 0.778 | 0.0 | |
| Q9F7D4 | 338 | UDP-glucose 4-epimerase O | yes | no | 0.613 | 0.869 | 0.274 | 1e-08 | |
| P55462 | 350 | Probable dTDP-glucose 4,6 | no | no | 0.501 | 0.685 | 0.25 | 2e-08 | |
| P44914 | 338 | dTDP-glucose 4,6-dehydrat | yes | no | 0.482 | 0.683 | 0.251 | 2e-08 | |
| Q14376 | 348 | UDP-glucose 4-epimerase O | yes | no | 0.578 | 0.795 | 0.255 | 5e-08 | |
| Q9S642 | 341 | dTDP-glucose 4,6-dehydrat | yes | no | 0.473 | 0.665 | 0.258 | 6e-08 | |
| P04397 | 699 | Bifunctional protein GAL1 | yes | no | 0.244 | 0.167 | 0.286 | 9e-08 | |
| O84903 | 331 | UDP-glucose 4-epimerase O | yes | no | 0.475 | 0.688 | 0.263 | 1e-07 | |
| Q5R8D0 | 348 | UDP-glucose 4-epimerase O | yes | no | 0.578 | 0.795 | 0.252 | 2e-07 |
| >sp|Q84KI6|SQD1_SPIOL UDP-sulfoquinovose synthase, chloroplastic OS=Spinacia oleracea GN=SQD1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/482 (77%), Positives = 419/482 (86%), Gaps = 3/482 (0%)
Query: 1 MAHLLSTSCSLNIPSCRKPSFQQLNQGLIGLPTSFTVKTSKSPIQTVILSAQRSQRCHTV 60
MAHLLSTSCS+ + K S + N G P SFT +TSKS ++++ +Q+ V
Sbjct: 1 MAHLLSTSCSMKVSPSEKLSSKCWNIGSTKYPMSFTQQTSKSAFKSLVHQRNNTQKLTVV 60
Query: 61 YATATPF---TPTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD 117
AT P T +S + +++ + S KRVM+IGGDGYCGWATALHLS K Y+V IVD
Sbjct: 61 RATTVPLNQETKAESGTSSFENNGNTSGRKRVMVIGGDGYCGWATALHLSKKNYDVCIVD 120
Query: 118 SLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPD 177
+L+RRLFDHQLGLDSLTPIASI +R+R W+ LTGK I+L++GDICDFEFL+E+FKSFEPD
Sbjct: 121 NLVRRLFDHQLGLDSLTPIASIQNRIRRWQGLTGKTIDLHVGDICDFEFLAETFKSFEPD 180
Query: 178 AVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTP 237
VVHFGEQRSAPYSMIDRSRAV+TQ NNVIGT+NVLFA+KEF +ECHLVKLGTMGEYGTP
Sbjct: 181 TVVHFGEQRSAPYSMIDRSRAVYTQQNNVIGTINVLFAIKEFSEECHLVKLGTMGEYGTP 240
Query: 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVV 297
NIDIEEG+ITI HNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVV
Sbjct: 241 NIDIEEGFITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVV 300
Query: 298 YGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTV 357
YGV T+ETAMHEELCNR DYD VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTV
Sbjct: 301 YGVMTEETAMHEELCNRFDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTV 360
Query: 358 QCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEE 417
QCVELAIANPA+ GEFRVFNQFTEQ+SV LAALVTKAGEKLGL+V+TISVPNPRVEAEE
Sbjct: 361 QCVELAIANPAKLGEFRVFNQFTEQYSVRDLAALVTKAGEKLGLNVETISVPNPRVEAEE 420
Query: 418 HYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTV 477
HYYNAKHTKL ELGL+PH+LSDSLLDS+LNFA+Q+KDRVD+KQIMPSVSW+KIG KP+T+
Sbjct: 421 HYYNAKHTKLAELGLKPHLLSDSLLDSVLNFAVQYKDRVDTKQIMPSVSWKKIGVKPQTL 480
Query: 478 AA 479
A
Sbjct: 481 RA 482
|
Involved in the biosynthesis of sulfolipids found in thylakoid membranes. Converts UDP-glucose and sulfite to the sulfolipid head group precursor UDP-sulfoquinovose. Spinacia oleracea (taxid: 3562) EC: 3EC: .EC: 1EC: 3EC: .EC: 1EC: .EC: 1 |
| >sp|O48917|SQD1_ARATH UDP-sulfoquinovose synthase, chloroplastic OS=Arabidopsis thaliana GN=SQD1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/478 (77%), Positives = 413/478 (86%), Gaps = 4/478 (0%)
Query: 1 MAHLLSTSCSLNIPSCRKPSFQQLNQGLIGLPTSFTVKT-SKSPIQTVILSAQRSQRCHT 59
MAHLLS SC I S + + G T F + S+S ++ ++ ++ ++
Sbjct: 1 MAHLLSASCPSVISLSSSSSKNSVKPFVSG-QTFFNAQLLSRSSLKGLLFQEKKPRKSCV 59
Query: 60 VYATATPFTPTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119
ATA P T Q ++N SK KRVM+IGGDGYCGWATALHLS K YEV IVD+L
Sbjct: 60 FRATAVPIT--QQAPPETSTNNSSSKPKRVMVIGGDGYCGWATALHLSKKNYEVCIVDNL 117
Query: 120 IRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAV 179
+RRLFDHQLGL+SLTPIASIHDR+ WK+LTGK+IELY+GDICDFEFL+ESFKSFEPD+V
Sbjct: 118 VRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSV 177
Query: 180 VHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI 239
VHFGEQRSAPYSMIDRSRAV+TQHNNVIGTLNVLFA+KEF +ECHLVKLGTMGEYGTPNI
Sbjct: 178 VHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI 237
Query: 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYG 299
DIEEGYITI HNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYG
Sbjct: 238 DIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYG 297
Query: 300 VRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQC 359
V+TDET MHEEL NRLDYD VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQC
Sbjct: 298 VKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQC 357
Query: 360 VELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHY 419
VE+AIANPA+ GEFRVFNQFTEQFSVN+LA+LVTKAG KLGLDVK ++VPNPRVEAEEHY
Sbjct: 358 VEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHY 417
Query: 420 YNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTV 477
YNAKHTKL+ELGL+PH LSDSLLDSLLNFA+QFKDRVD+KQIMPSVSW+KIG K K++
Sbjct: 418 YNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSM 475
|
Involved in the biosynthesis of sulfolipids found in thylakoid membranes. Converts UDP-glucose and sulfite to the sulfolipid head group precursor UDP-sulfoquinovose. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 1 EC: 3 EC: . EC: 1 EC: . EC: 1 |
| >sp|Q9F7D4|GALE_YERPE UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 97/353 (27%), Positives = 138/353 (39%), Gaps = 59/353 (16%)
Query: 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS 148
V++ GG GY G T + L GY+ I+D+L + +A IH S
Sbjct: 3 VLVTGGSGYIGSHTCVQLIEAGYKPVILDNLCN---------SKSSVLARIH-------S 46
Query: 149 LTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIG 208
LTG ELY GDI D L F + AV+HF ++ S+ +R + +NNV G
Sbjct: 47 LTGYTPELYAGDIRDRTLLDSIFAAHPIHAVIHFAGLKAVGESV---NRPLEYYNNNVFG 103
Query: 209 TLNVLFAMKEFRQECHLVKLGTMGEYG-TPNIDIEEGYITINHNGRTDTLPYPKQASSFY 267
TL +L AM+ Q +L+ + YG P I E + T SS Y
Sbjct: 104 TLVLLEAMRA-AQVKNLIFSSSATVYGDQPQIPYVESFPT-------------GSPSSPY 149
Query: 268 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNR 327
SK+ + ++ D + + H D G+ L
Sbjct: 150 GRSKLMVEQILQ------DVQLADPQWNMTILRYFNPVGAHPSGLMGEDPQGIPNN-LMP 202
Query: 328 FCVQAAVG--HPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA-------QPGEFRVFNQ 378
F Q AVG L ++G G T +RD + V+LA + A +PG +FN
Sbjct: 203 FIAQVAVGRRESLAIFGNGYPTPDGTGVRDYIHVVDLADGHVAAMKTLHGKPG-VHIFNL 261
Query: 379 FTE-QFSVNQLAALVTKA-GEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE 429
SV Q+ A +KA G+ L PR E + Y A TK E
Sbjct: 262 GAGVGHSVLQVVAAFSKACGKPLAYHFA------PRREGDLPAYWADATKAAE 308
|
Yersinia pestis (taxid: 632) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|P55462|RFBB_RHISN Probable dTDP-glucose 4,6-dehydratase OS=Rhizobium sp. (strain NGR234) GN=NGR_a03580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 72/288 (25%), Positives = 115/288 (39%), Gaps = 48/288 (16%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
R+++ GG G+ G A +L + EV VD L + L SL P+ +
Sbjct: 2 RILVTGGAGFIGSALVRYLVSINAEVLNVDKLT-----YAGNLASLKPVEGL-------- 48
Query: 148 SLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
+N DICD ++E+F++F+PD V+H + S +DRS T ++ +
Sbjct: 49 ----RNYRFLRADICDRVAINEAFETFQPDYVIHLAAE-----SHVDRS---ITGADDFV 96
Query: 208 GT-LNVLFAMKE-FRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASS 265
T +N F M E RQ + + ++ +E Y ++ G+ + + P SS
Sbjct: 97 QTNVNGTFTMLETARQYWSNLSQNRKAFFKMLHVSTDEVYGSLGDRGQFEEVS-PYDPSS 155
Query: 266 FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYG-VRTDETAMHEELCNRLDYDGVFGTA 324
Y SK H + +G+ N YG E + + N LD
Sbjct: 156 PYSASKAASDHFATAWQRTYGLPVVISNCSNNYGPFHFPEKLIPLMILNALDR------- 208
Query: 325 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGE 372
PL VYG G R +L + D + + L I +PGE
Sbjct: 209 -----------KPLPVYGTGSNIRDWLYVDDHARALWL-IVREGRPGE 244
|
Rhizobium sp. (strain NGR234) (taxid: 394) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|P44914|RMLB_HAEIN dTDP-glucose 4,6-dehydratase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rffG PE=3 SV=1 | Back alignment and function description |
|---|
Score = 61.2 bits (147), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 71/282 (25%), Positives = 111/282 (39%), Gaps = 51/282 (18%)
Query: 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS 148
+++ GG G+ G A++ +I D + +D LT A+ LR
Sbjct: 4 ILVTGGSGFIG-------------SALIRYIINHTQDFVINIDKLT-YAANQSALR---- 45
Query: 149 LTGKNIELYIG---DICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRS---RAVFTQ 202
+N Y+ DICD + F+ ++PDAV+H + S +DRS A F Q
Sbjct: 46 -EVENNPRYVFEKVDICDLNVIENIFEKYQPDAVMHLAAE-----SHVDRSISGAADFVQ 99
Query: 203 HNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQ 262
N++GT +L K + K T + + D G ++++ T+ PY
Sbjct: 100 -TNIVGTYTLLEVAKNYWHTLDEAKKTTF-RFHHISTDEVYGDLSLSEPAFTEQSPY--H 155
Query: 263 ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322
SS Y SK +H + + +G+ N YG H E L
Sbjct: 156 PSSPYSASKAASNHLVQAWHRTYGLPVIITNSSNNYGAY-----QHAEKLIPL------- 203
Query: 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAI 364
A +G PL +YG G Q R +L + D VQ L +
Sbjct: 204 -----MISNAVMGKPLPIYGDGQQIRDWLFVEDHVQASYLVL 240
|
Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6-deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction. Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|Q14376|GALE_HUMAN UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 83/325 (25%), Positives = 131/325 (40%), Gaps = 48/325 (14%)
Query: 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRC 145
A++V++ GG GY G T L L GY ++D+ H ++ S+ + LR
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF------H----NAFRGGGSLPESLRR 51
Query: 146 WKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSM---IDRSRAVFTQ 202
+ LTG+++E DI D L FK + AV+HF ++ S+ +D R
Sbjct: 52 VQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYYRV---- 107
Query: 203 HNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQ 262
N+ GT+ +L MK + +LV + YG P Y+ ++ T P
Sbjct: 108 --NLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQ------YLPLDEAHPTGGCTNPYG 158
Query: 263 ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322
S F+ + D C+A D V + T H C D G+
Sbjct: 159 KSKFFIEEMIRD------LCQA------DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPN 206
Query: 323 TALNRFCVQAAVG--HPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEF------R 374
L + Q A+G L V+G T +RD + V+LA + A + R
Sbjct: 207 N-LMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCR 265
Query: 375 VFNQFT-EQFSVNQLAALVTKAGEK 398
++N T +SV Q+ + KA K
Sbjct: 266 IYNLGTGTGYSVLQMVQAMEKASGK 290
|
Catalyzes two distinct but analogous reactions: the epimerization of UDP-glucose to UDP-galactose and the epimerization of UDP-N-acetylglucosamine to UDP-N-acetylgalactosamine. Homo sapiens (taxid: 9606) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q9S642|RMLB_NEIMA dTDP-glucose 4,6-dehydratase OS=Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) GN=rfbB1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 59.3 bits (142), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 110/282 (39%), Gaps = 55/282 (19%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
+++++ GG G+ G A+V +IR D + LD LT ++
Sbjct: 2 RKILVTGGAGFIG-------------SAVVRHIIRNTQDSVVNLDKLTYAGNL------- 41
Query: 147 KSLT----GKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDR---SRAV 199
+SLT DICD L F PDAV+H + S +DR S
Sbjct: 42 ESLTDIADNPRYAFEQVDICDRAELDRVFAQHRPDAVMHLAAE-----SHVDRSIGSAGE 96
Query: 200 FTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPY 259
F Q N++GT N+L A + +RQ+ K + + D G ++ + T+T PY
Sbjct: 97 FIQ-TNIVGTFNLLEAARAYRQQMPSEKHEAF-RFHHISTDEVYGDLSGTDDLFTETAPY 154
Query: 260 PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYG-VRTDETAMHEELCNRLDYD 318
SS Y SK H + + +G+ N YG E + + N LD
Sbjct: 155 --APSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFPEKLIPLMILNALD-- 210
Query: 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCV 360
G PL VYG G Q R +L + D + +
Sbjct: 211 ----------------GKPLPVYGDGMQIRDWLFVEDHARAL 236
|
Catalyzes the dehydration of dTDP-D-glucose to form dTDP-6-deoxy-D-xylo-4-hexulose via a three-step process involving oxidation, dehydration and reduction. Neisseria meningitidis serogroup A / serotype 4A (strain Z2491) (taxid: 122587) EC: 4 EC: . EC: 2 EC: . EC: 1 EC: . EC: 4 EC: 6 |
| >sp|P04397|GAL10_YEAST Bifunctional protein GAL10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GAL10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 19/136 (13%)
Query: 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRL 143
S +K V++ GG GY G T + L GY+ + D+L S +D +
Sbjct: 9 STSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSN----------------STYDSV 52
Query: 144 RCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQH 203
+ LT +I Y D+CD + L + FK ++ D+V+HF ++ S R H
Sbjct: 53 ARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIPLRYY---H 109
Query: 204 NNVIGTLNVLFAMKEF 219
NN++GT+ +L M+++
Sbjct: 110 NNILGTVVLLELMQQY 125
|
Mutarotase converts alpha-aldose to the beta-anomer. It is active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 3 |
| >sp|O84903|GALE_LACCA UDP-glucose 4-epimerase OS=Lactobacillus casei GN=galE PE=3 SV=1 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 114/281 (40%), Gaps = 53/281 (18%)
Query: 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS 148
+ ++GG GY G T L G +V ++D+LI H+ +D R R
Sbjct: 3 IAVLGGAGYIGSHTVKQLLAAGEDVVVLDNLIT---GHRKAVDP---------RAR---- 46
Query: 149 LTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIG 208
Y GDI D+ FLS+ F + D +VHF P SM D + NN G
Sbjct: 47 -------FYQGDIRDYHFLSQVFSQEKIDGIVHFAAFSIVPESMKDPLKYF---DNNTGG 96
Query: 209 TLNVLFAMKEFRQECHLVKLGTMGEYGTPN-IDIEEGYITINHNGRTDTLPYPKQASSFY 267
+ +L AM +F + +V T YG P + I+E TD P+ ++ Y
Sbjct: 97 MITLLEAMNQFGIK-KIVFSSTAATYGEPKQVPIKE----------TD----PQVPTNPY 141
Query: 268 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNR 327
SK+ + + A+G++ L V G D + + T +
Sbjct: 142 GESKLAMEKIMHWADVAYGLKFVALRYFNVAGAMPDGSIGEDHHPE---------THIVP 192
Query: 328 FCVQAAVG--HPLTVYGKGGQTRGYLDIRDTVQCVELAIAN 366
+Q A G L +YG T+ ++RD V V+LA A+
Sbjct: 193 IILQVAAGTRTGLQIYGDDYPTKDGTNVRDYVHVVDLADAH 233
|
Lactobacillus casei (taxid: 1582) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
| >sp|Q5R8D0|GALE_PONAB UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE=2 SV=1 | Back alignment and function description |
|---|
Score = 58.2 bits (139), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 82/325 (25%), Positives = 129/325 (39%), Gaps = 48/325 (14%)
Query: 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRC 145
A++V++ GG GY G T L L GY ++D+ ++ S+ + LR
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNF----------HNAFRGGGSLPESLRR 51
Query: 146 WKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSM---IDRSRAVFTQ 202
+ LTG+++E DI D L FK AV+HF ++ S+ +D R
Sbjct: 52 VQELTGRSVEFEEMDILDQGALQRLFKKHSFMAVIHFAGLKAVGESVQKPLDYYRV---- 107
Query: 203 HNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQ 262
N+ GT+ +L MK + +LV + YG P Y+ ++ T P
Sbjct: 108 --NLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQ------YLPLDEAHPTGGCTNPYG 158
Query: 263 ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322
S F+ + D C+A D V + T H C D G+
Sbjct: 159 KSKFFIEEMIRD------LCQA------DKTWNAVLLRYFNPTGAHASGCIGEDPQGIPN 206
Query: 323 TALNRFCVQAAVG--HPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEF------R 374
L + Q A+G L V+G T +RD + V+LA + A + R
Sbjct: 207 N-LMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCR 265
Query: 375 VFNQFT-EQFSVNQLAALVTKAGEK 398
++N T +SV Q+ + KA K
Sbjct: 266 IYNLGTGTGYSVLQMVQAMEKASGK 290
|
Catalyzes two distinct but analogous reactions: the epimerization of UDP-glucose to UDP-galactose and the epimerization of UDP-N-acetylglucosamine to UDP-N-acetylgalactosamine. Pongo abelii (taxid: 9601) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 479 | ||||||
| 225429530 | 485 | PREDICTED: UDP-sulfoquinovose synthase, | 1.0 | 0.987 | 0.837 | 0.0 | |
| 224092184 | 482 | predicted protein [Populus trichocarpa] | 1.0 | 0.993 | 0.846 | 0.0 | |
| 449447120 | 483 | PREDICTED: UDP-sulfoquinovose synthase, | 1.0 | 0.991 | 0.807 | 0.0 | |
| 255550762 | 481 | UDP-sulfoquinovose synthase, putative [R | 0.947 | 0.943 | 0.847 | 0.0 | |
| 350536877 | 480 | UDP-sulfoquinovose synthase [Solanum lyc | 0.995 | 0.993 | 0.809 | 0.0 | |
| 357509541 | 477 | UDP-sulfoquinovose synthase [Medicago tr | 0.995 | 1.0 | 0.774 | 0.0 | |
| 38258438 | 482 | RecName: Full=UDP-sulfoquinovose synthas | 1.0 | 0.993 | 0.771 | 0.0 | |
| 356571967 | 477 | PREDICTED: UDP-sulfoquinovose synthase, | 0.987 | 0.991 | 0.792 | 0.0 | |
| 269854061 | 476 | UDP-sulfoquinovose synthase [Arachis hyp | 0.993 | 1.0 | 0.807 | 0.0 | |
| 356503411 | 513 | PREDICTED: UDP-sulfoquinovose synthase, | 0.981 | 0.916 | 0.791 | 0.0 |
| >gi|225429530|ref|XP_002279085.1| PREDICTED: UDP-sulfoquinovose synthase, chloroplastic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 826 bits (2134), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/485 (83%), Positives = 437/485 (90%), Gaps = 6/485 (1%)
Query: 1 MAHLLSTSCSLNIPSCRKPSFQQLNQGLIGLPTSFTVKTSKS---PIQTVILSAQRSQRC 57
MAHLLSTSCSL I SCRKP +QLN+ P F++KT+K P + ++ + +R
Sbjct: 1 MAHLLSTSCSLKITSCRKPHSKQLNESSNAFPAYFSLKTTKDLYCPFGSFVVQRGKQRRI 60
Query: 58 HTVYATATPF---TPTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVA 114
TV AT P PTQ S HQ+SN PS KRVM+IGGDGYCGWATALHLSNK YEVA
Sbjct: 61 CTVRATTLPLDQEAPTQPGSVFHQNSNGPSPPKRVMVIGGDGYCGWATALHLSNKNYEVA 120
Query: 115 IVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSF 174
IVD+L+RRLFDHQLGLDSLTPI+SIH+R+R WKSLTGK+I+LYIGDICDFEFLSESFKSF
Sbjct: 121 IVDNLVRRLFDHQLGLDSLTPISSIHNRIRRWKSLTGKSIQLYIGDICDFEFLSESFKSF 180
Query: 175 EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEY 234
EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFA+KEFR++CHLVKLGTMGEY
Sbjct: 181 EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFREQCHLVKLGTMGEY 240
Query: 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQ 294
GTPNIDIEEGYITI HNGRTDTLPYPKQASSFYHLSKVHDS+NIAFTCKAWGIRATDLNQ
Sbjct: 241 GTPNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSNNIAFTCKAWGIRATDLNQ 300
Query: 295 GVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIR 354
GVVYGVRTDET MHEELCNR DYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIR
Sbjct: 301 GVVYGVRTDETEMHEELCNRFDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIR 360
Query: 355 DTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVE 414
DTVQCVELAIANPAQ GEFRVFNQFTEQFSVN LA LVTKAG+KLGLDV+TISVPNPRVE
Sbjct: 361 DTVQCVELAIANPAQRGEFRVFNQFTEQFSVNDLATLVTKAGKKLGLDVQTISVPNPRVE 420
Query: 415 AEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKP 474
AEEHYYNAKHTKLIELGL+PH+LSDSLLDSLLNFA++FKDRVD+KQIMPSVSWRKIG KP
Sbjct: 421 AEEHYYNAKHTKLIELGLKPHLLSDSLLDSLLNFAVKFKDRVDTKQIMPSVSWRKIGVKP 480
Query: 475 KTVAA 479
KTV+A
Sbjct: 481 KTVSA 485
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224092184|ref|XP_002309498.1| predicted protein [Populus trichocarpa] gi|222855474|gb|EEE93021.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 819 bits (2115), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/482 (84%), Positives = 434/482 (90%), Gaps = 3/482 (0%)
Query: 1 MAHLLSTSCSLNIPSCRKPSFQQLNQGLIGLPTSFTVKTSKSPIQTVILSAQRSQRCHTV 60
MAHLLSTSCS+ + S +P Q Q T FT+ TSKSP + +L Q V
Sbjct: 1 MAHLLSTSCSIKLSSSHRPLSQPFRQCPTKCLTFFTLGTSKSPFKRFVLQGGTQQASCVV 60
Query: 61 YATATPF---TPTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD 117
AT P TPTQS S Q S++PSK KRVM+IGGDGYCGWATALHLSNKGYEVAIVD
Sbjct: 61 RATVAPISQETPTQSSSDSRQKSSEPSKPKRVMVIGGDGYCGWATALHLSNKGYEVAIVD 120
Query: 118 SLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPD 177
SLIRRLFD QLGLDSLTPIASIH+RLRCW+S+TGK IELYIGDICDFEFLSE+FKSFEPD
Sbjct: 121 SLIRRLFDQQLGLDSLTPIASIHNRLRCWRSVTGKTIELYIGDICDFEFLSETFKSFEPD 180
Query: 178 AVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTP 237
AVVHFGEQRSAPYSMIDR+RAVFTQHNNVIGTLNVLFA+KEFR +CHLVKLGTMGEYGTP
Sbjct: 181 AVVHFGEQRSAPYSMIDRNRAVFTQHNNVIGTLNVLFAIKEFRDQCHLVKLGTMGEYGTP 240
Query: 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVV 297
NIDIEEGYITI HNGRTDTLP+PKQASSFYHLSKVHDS+NIAFTCKAWGIRATDLNQGVV
Sbjct: 241 NIDIEEGYITITHNGRTDTLPFPKQASSFYHLSKVHDSNNIAFTCKAWGIRATDLNQGVV 300
Query: 298 YGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTV 357
YGVRTDET MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTV
Sbjct: 301 YGVRTDETEMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTV 360
Query: 358 QCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEE 417
QCVELAIANPAQPGEFRVFNQFTEQFSVN+LA+LVTKAGEKLGLDVKTISVPNPRVEAEE
Sbjct: 361 QCVELAIANPAQPGEFRVFNQFTEQFSVNELASLVTKAGEKLGLDVKTISVPNPRVEAEE 420
Query: 418 HYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTV 477
HYYNAKHTKLIELGL+PH+LSDSLLDSLLNFAI+FKDRVD+KQIMPSVSW+KIG KPKT+
Sbjct: 421 HYYNAKHTKLIELGLEPHLLSDSLLDSLLNFAIKFKDRVDTKQIMPSVSWKKIGVKPKTL 480
Query: 478 AA 479
AA
Sbjct: 481 AA 482
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449447120|ref|XP_004141317.1| PREDICTED: UDP-sulfoquinovose synthase, chloroplastic-like [Cucumis sativus] gi|449521637|ref|XP_004167836.1| PREDICTED: UDP-sulfoquinovose synthase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/483 (80%), Positives = 427/483 (88%), Gaps = 4/483 (0%)
Query: 1 MAHLLSTSCSLNIPSCRKPSFQQLNQGLIGLPTSFTVKTSKSPIQTVILSAQRSQRCHTV 60
MAH+LSTSC L I S +K +S T K KSP+ ++ ++ R V
Sbjct: 1 MAHVLSTSCCLKISSSKKSYSNPSTDNFTSFSSSCTSKLCKSPMPRLVWQEKKLPRKCIV 60
Query: 61 YATATPFT----PTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIV 116
AT P TQS SG +SN SK +RVM+IGGDGYCGWATALHLS KGYEVAIV
Sbjct: 61 RATTLPANQEAPATQSGSGSLDASNGLSKTQRVMVIGGDGYCGWATALHLSKKGYEVAIV 120
Query: 117 DSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEP 176
D+L+RRLFDHQLGLDSLTPI+SIH+R+RCWKS+TGK IEL+IGDICDFEFL+E+FKSFEP
Sbjct: 121 DNLVRRLFDHQLGLDSLTPISSIHNRIRCWKSITGKTIELFIGDICDFEFLTETFKSFEP 180
Query: 177 DAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236
DAVVHFGEQRSAPYSMIDRSRA+FTQHNNVIGTLNVLFA+KEFR++CHLVKLGTMGEYGT
Sbjct: 181 DAVVHFGEQRSAPYSMIDRSRAIFTQHNNVIGTLNVLFAIKEFREDCHLVKLGTMGEYGT 240
Query: 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGV 296
PNIDIEEGYITI HNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGV
Sbjct: 241 PNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGV 300
Query: 297 VYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDT 356
VYG+RTDETA+HEEL NR DYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDT
Sbjct: 301 VYGLRTDETALHEELYNRFDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDT 360
Query: 357 VQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAE 416
VQCVELAIANPA PGEFRVFNQFTEQFSVN+LAALVTKAGEKLGLDV+TI+VPNPRVEAE
Sbjct: 361 VQCVELAIANPANPGEFRVFNQFTEQFSVNELAALVTKAGEKLGLDVQTITVPNPRVEAE 420
Query: 417 EHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKT 476
EHYYNAKHTKLIELGL+PH+LSDSLLDS+LNFAI++KDRVD+KQIMPSVSWRKIG KP+T
Sbjct: 421 EHYYNAKHTKLIELGLKPHLLSDSLLDSVLNFAIKYKDRVDTKQIMPSVSWRKIGVKPRT 480
Query: 477 VAA 479
+AA
Sbjct: 481 IAA 483
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550762|ref|XP_002516429.1| UDP-sulfoquinovose synthase, putative [Ricinus communis] gi|223544249|gb|EEF45770.1| UDP-sulfoquinovose synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2072), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/458 (84%), Positives = 425/458 (92%), Gaps = 4/458 (0%)
Query: 25 NQGLIGLPTSFTVKTSKSPIQTVILSAQRSQRCHTVYATATPFT---PTQSRSGLHQSSN 81
NQ PT FT++TS+ P++ ++L +R +RC V+A + P + PT+S S HQ+S
Sbjct: 25 NQHATTFPTYFTLRTSR-PLRKLVLQGERPKRCCVVHAASVPVSQEAPTRSSSNSHQTSG 83
Query: 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHD 141
+ K++RVM+IGGDGYCGWATALHLS KGYEVAIVD+LIRRLFD QLGLDSLTPI+SIH+
Sbjct: 84 ESFKSQRVMVIGGDGYCGWATALHLSKKGYEVAIVDNLIRRLFDQQLGLDSLTPISSIHN 143
Query: 142 RLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFT 201
RLRCWKSLTGK IELYIGDICDFEFLSE+FKSFEPDAVVHFGEQRSAPYSMIDRSRAVFT
Sbjct: 144 RLRCWKSLTGKTIELYIGDICDFEFLSETFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFT 203
Query: 202 QHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPK 261
QHNNVIGTLNVLFA+KEFR+ECHLVKLGTMGEYGTPNIDIEEGYITI HNGRTDTLPYPK
Sbjct: 204 QHNNVIGTLNVLFAIKEFREECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPK 263
Query: 262 QASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321
QASSFYHLSKVHDS+NIAFTCKAWGIRATDLNQGVVYGVRT+ET MHEEL NR DYDGVF
Sbjct: 264 QASSFYHLSKVHDSNNIAFTCKAWGIRATDLNQGVVYGVRTNETEMHEELYNRFDYDGVF 323
Query: 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381
GTALNRFCVQAA+GHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA+PGEFRVFNQFTE
Sbjct: 324 GTALNRFCVQAAIGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAKPGEFRVFNQFTE 383
Query: 382 QFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSL 441
QFSVN+LA+LVTKAGEK+GL+VKTISVPNPRVEAEEHYYNAKHTKLIELGL+PH+LSDSL
Sbjct: 384 QFSVNELASLVTKAGEKIGLEVKTISVPNPRVEAEEHYYNAKHTKLIELGLKPHLLSDSL 443
Query: 442 LDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTVAA 479
LDSLLNFAI+FKDRVD+KQIMPSVSW+KIG KPKTVAA
Sbjct: 444 LDSLLNFAIKFKDRVDTKQIMPSVSWKKIGVKPKTVAA 481
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350536877|ref|NP_001234269.1| UDP-sulfoquinovose synthase [Solanum lycopersicum] gi|224579299|gb|ACN58227.1| UDP-sulfoquinovose synthase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 802 bits (2071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/482 (80%), Positives = 440/482 (91%), Gaps = 5/482 (1%)
Query: 1 MAHLLSTSCSLNIPSCRKPSFQQLNQGLIGLPTSFTVKTSKSPIQTVILSAQRSQRCHTV 60
MAHLLST+CSL++ S +K F+ +NQ PT F + S SP++ + L ++RS + + +
Sbjct: 1 MAHLLSTTCSLDVSSSKKLHFKSINQCSTPNPTCFNMGISFSPLK-LSLQSKRSAK-YVI 58
Query: 61 YATATPFTP---TQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD 117
A+A + TQ+ SG Q+++ S K+VM+IGGDGYCGWATALHLSNKGYEVAIVD
Sbjct: 59 RASAVSMSQEARTQNDSGSQQTTDGASTRKKVMVIGGDGYCGWATALHLSNKGYEVAIVD 118
Query: 118 SLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPD 177
+LIRRLFD QLGLDSLTPI+SIH+R+R WKSLTGK+I+L++GDIC+FEFL+E+FKSFEPD
Sbjct: 119 NLIRRLFDDQLGLDSLTPISSIHNRIRRWKSLTGKDIQLFVGDICEFEFLAEAFKSFEPD 178
Query: 178 AVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTP 237
AVVHFGEQRSAPYSMIDRSRA++TQHNNVIGTLNVLFA+KEFR+ECHLVKLGTMGEYGTP
Sbjct: 179 AVVHFGEQRSAPYSMIDRSRAIYTQHNNVIGTLNVLFAIKEFREECHLVKLGTMGEYGTP 238
Query: 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVV 297
NIDIEEGYITI HNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVV
Sbjct: 239 NIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVV 298
Query: 298 YGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTV 357
YGVRTDETA+HE+L NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTV
Sbjct: 299 YGVRTDETAIHEDLVNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTV 358
Query: 358 QCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEE 417
QCVE+AIANPA+PGEFRVFNQFTEQFSVN+LAALVTKAG+KLGL+VK ISVPNPRVEAEE
Sbjct: 359 QCVEIAIANPAKPGEFRVFNQFTEQFSVNELAALVTKAGQKLGLEVKAISVPNPRVEAEE 418
Query: 418 HYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTV 477
HYYNAKHTKLIELGLQPH+LSDSLLDSLLNFA+Q+KDRVD+KQIMPSVSW+KIG KPKTV
Sbjct: 419 HYYNAKHTKLIELGLQPHLLSDSLLDSLLNFAVQYKDRVDTKQIMPSVSWKKIGAKPKTV 478
Query: 478 AA 479
AA
Sbjct: 479 AA 480
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509541|ref|XP_003625059.1| UDP-sulfoquinovose synthase [Medicago truncatula] gi|355500074|gb|AES81277.1| UDP-sulfoquinovose synthase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2054), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/479 (77%), Positives = 415/479 (86%), Gaps = 2/479 (0%)
Query: 1 MAHLLSTSCSLNIPSCRKPSFQQLNQGLIGLPTSFTVKTSKSPIQTVILSAQRSQRCHTV 60
MA LLS+SCSL + KP + +Q + SK+P + + L Q+ ++ V
Sbjct: 1 MAQLLSSSCSLTFSASNKPCLKPFHQCSTSFSNTVVCDNSKTPFRQLFLREQKPRKSLAV 60
Query: 61 YATATPFTPTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120
+T T + + SS DP K KRVM+IGGDGYCGWATALHLSNKGYEVAIVD+L+
Sbjct: 61 VNAST--ISTGQEAPVQTSSGDPFKPKRVMVIGGDGYCGWATALHLSNKGYEVAIVDNLV 118
Query: 121 RRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVV 180
RRLFDHQLGLDSLTPI+SI DR++CWKSLTGK+IELYIGDIC+FEFLSE+FKS+EPDAVV
Sbjct: 119 RRLFDHQLGLDSLTPISSIQDRIQCWKSLTGKSIELYIGDICEFEFLSETFKSYEPDAVV 178
Query: 181 HFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNID 240
HFGEQRSAPYSMIDRSRAV+TQ NNV+GTLNVLFA+KE+R++CHLVKLGTMGEYGTPNID
Sbjct: 179 HFGEQRSAPYSMIDRSRAVYTQQNNVVGTLNVLFAIKEYREDCHLVKLGTMGEYGTPNID 238
Query: 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGV 300
IEEGYITI HNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGV
Sbjct: 239 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGV 298
Query: 301 RTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCV 360
RTDETAMHEELCNR DYD +FGTALNRFCVQAAVGHPLTVYGKGGQTR +LDIRDTVQCV
Sbjct: 299 RTDETAMHEELCNRFDYDAIFGTALNRFCVQAAVGHPLTVYGKGGQTRAFLDIRDTVQCV 358
Query: 361 ELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYY 420
ELAIANPA PGEFRVFNQFTEQF V +LA LVTKAGEKLGLDVKTISVPNPRVE EEHYY
Sbjct: 359 ELAIANPANPGEFRVFNQFTEQFKVTELAELVTKAGEKLGLDVKTISVPNPRVELEEHYY 418
Query: 421 NAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTVAA 479
N K+TKL++LGL+PH LSDSL+DSLLNFA+Q+KDRVD+KQIMP VSWRK+G K KT+ +
Sbjct: 419 NCKNTKLVDLGLKPHFLSDSLIDSLLNFAVQYKDRVDTKQIMPGVSWRKVGVKTKTLTS 477
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|38258438|sp|Q84KI6.1|SQD1_SPIOL RecName: Full=UDP-sulfoquinovose synthase, chloroplastic; AltName: Full=SoSQD1; AltName: Full=Sulfite:UDP-glucose sulfotransferase; AltName: Full=Sulfolipid biosynthesis protein; Flags: Precursor gi|28398021|gb|AAO39667.1| UDP-sulfoquinovose synthase SQD1 [Spinacia oleracea] | Back alignment and taxonomy information |
|---|
Score = 789 bits (2038), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/482 (77%), Positives = 419/482 (86%), Gaps = 3/482 (0%)
Query: 1 MAHLLSTSCSLNIPSCRKPSFQQLNQGLIGLPTSFTVKTSKSPIQTVILSAQRSQRCHTV 60
MAHLLSTSCS+ + K S + N G P SFT +TSKS ++++ +Q+ V
Sbjct: 1 MAHLLSTSCSMKVSPSEKLSSKCWNIGSTKYPMSFTQQTSKSAFKSLVHQRNNTQKLTVV 60
Query: 61 YATATPF---TPTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD 117
AT P T +S + +++ + S KRVM+IGGDGYCGWATALHLS K Y+V IVD
Sbjct: 61 RATTVPLNQETKAESGTSSFENNGNTSGRKRVMVIGGDGYCGWATALHLSKKNYDVCIVD 120
Query: 118 SLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPD 177
+L+RRLFDHQLGLDSLTPIASI +R+R W+ LTGK I+L++GDICDFEFL+E+FKSFEPD
Sbjct: 121 NLVRRLFDHQLGLDSLTPIASIQNRIRRWQGLTGKTIDLHVGDICDFEFLAETFKSFEPD 180
Query: 178 AVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTP 237
VVHFGEQRSAPYSMIDRSRAV+TQ NNVIGT+NVLFA+KEF +ECHLVKLGTMGEYGTP
Sbjct: 181 TVVHFGEQRSAPYSMIDRSRAVYTQQNNVIGTINVLFAIKEFSEECHLVKLGTMGEYGTP 240
Query: 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVV 297
NIDIEEG+ITI HNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVV
Sbjct: 241 NIDIEEGFITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVV 300
Query: 298 YGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTV 357
YGV T+ETAMHEELCNR DYD VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTV
Sbjct: 301 YGVMTEETAMHEELCNRFDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTV 360
Query: 358 QCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEE 417
QCVELAIANPA+ GEFRVFNQFTEQ+SV LAALVTKAGEKLGL+V+TISVPNPRVEAEE
Sbjct: 361 QCVELAIANPAKLGEFRVFNQFTEQYSVRDLAALVTKAGEKLGLNVETISVPNPRVEAEE 420
Query: 418 HYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTV 477
HYYNAKHTKL ELGL+PH+LSDSLLDS+LNFA+Q+KDRVD+KQIMPSVSW+KIG KP+T+
Sbjct: 421 HYYNAKHTKLAELGLKPHLLSDSLLDSVLNFAVQYKDRVDTKQIMPSVSWKKIGVKPQTL 480
Query: 478 AA 479
A
Sbjct: 481 RA 482
|
Source: Spinacia oleracea Species: Spinacia oleracea Genus: Spinacia Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571967|ref|XP_003554142.1| PREDICTED: UDP-sulfoquinovose synthase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 785 bits (2026), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/483 (79%), Positives = 422/483 (87%), Gaps = 10/483 (2%)
Query: 1 MAHLLSTSCSLNIPSCRKPSFQQLNQGLIGLPTSFTVKTSKSPIQTVILSAQRSQR---- 56
MA LLS+SCSL + S KP + ++ SKSP + + L Q+ ++
Sbjct: 1 MAQLLSSSCSLTVCSRNKPYLKPFDKCSTPFSMKVACNNSKSPFRRLFLQEQKPRKDSLV 60
Query: 57 CHTVYATATPFTPTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIV 116
H + + TP Q+ SS+DP K +RVM+IGGDGYCGWATALHLSNKGYEVAIV
Sbjct: 61 VHAAAVSTSQGTPVQT------SSSDPFKQQRVMVIGGDGYCGWATALHLSNKGYEVAIV 114
Query: 117 DSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEP 176
DSL+RRLFDHQLGLDSLTPI+SI +RL+CWKSLTGK IELYIGDICDFEFLSE+FKSFEP
Sbjct: 115 DSLVRRLFDHQLGLDSLTPISSIQNRLQCWKSLTGKTIELYIGDICDFEFLSETFKSFEP 174
Query: 177 DAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236
DAVVHFGEQRSAPYSMIDRSRAV+TQ NNVIGTLNVLFA+KEFR++CHLVKLGTMGEYGT
Sbjct: 175 DAVVHFGEQRSAPYSMIDRSRAVYTQQNNVIGTLNVLFAIKEFREQCHLVKLGTMGEYGT 234
Query: 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGV 296
PNIDIEEGYITI HNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGV
Sbjct: 235 PNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGV 294
Query: 297 VYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDT 356
VYGVRTDETAMHEEL NR DYDG+FGTALNRFCVQAAVGHPLTVYGKGGQTRG+LDIRDT
Sbjct: 295 VYGVRTDETAMHEELYNRFDYDGIFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDT 354
Query: 357 VQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAE 416
VQCVELAIANPA+PGEFRVFNQFTEQFSVNQLA LVTKAGEKLG++VKTI+VPNPRVEAE
Sbjct: 355 VQCVELAIANPAKPGEFRVFNQFTEQFSVNQLANLVTKAGEKLGIEVKTINVPNPRVEAE 414
Query: 417 EHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKT 476
EHYYN K+TKL++LGL+PH LSDSLLDSLLNFA+Q+KDRVD+KQIMPSVSW+KIG K KT
Sbjct: 415 EHYYNCKNTKLVDLGLRPHFLSDSLLDSLLNFAVQYKDRVDTKQIMPSVSWKKIGVKTKT 474
Query: 477 VAA 479
V A
Sbjct: 475 VTA 477
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|269854061|gb|ACZ51244.1| UDP-sulfoquinovose synthase [Arachis hypogaea] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 387/479 (80%), Positives = 422/479 (88%), Gaps = 3/479 (0%)
Query: 1 MAHLLSTSCSLNIPSCRKPSFQQLNQGLIGLPTSFTVKTSKSPIQTVILSAQRSQRCHTV 60
MA LLS+S SL I S KP + NQ + TS S P + + L Q+ ++ +
Sbjct: 1 MAQLLSSSSSLTIFSRNKPYLKPFNQCSMSFSTSAACNNSTYPFRKLFLQRQKPRKSLVL 60
Query: 61 YATATPFTPTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120
+A T + + SS +PSK +RVM+IGGDGYCGWATALHLS KGYEVAIVD+LI
Sbjct: 61 QVSAVS---TSIETPVQTSSGEPSKPQRVMVIGGDGYCGWATALHLSKKGYEVAIVDNLI 117
Query: 121 RRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVV 180
RRLFDHQLGLDSLTPI+SI +R+RCWKSLTGK+IELYIGDICDFEFL+E+FKSFEPDAVV
Sbjct: 118 RRLFDHQLGLDSLTPISSIQNRIRCWKSLTGKSIELYIGDICDFEFLTETFKSFEPDAVV 177
Query: 181 HFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNID 240
HFGEQRSAPYSMIDR RAVFTQ NNVIGTLNVLFA+KEFR++CHLVKLGTMGEYGTPNID
Sbjct: 178 HFGEQRSAPYSMIDRPRAVFTQQNNVIGTLNVLFAIKEFREQCHLVKLGTMGEYGTPNID 237
Query: 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGV 300
IEEGYITI HNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYG+
Sbjct: 238 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGL 297
Query: 301 RTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCV 360
RTDETAMHEELCNR DYDG+FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCV
Sbjct: 298 RTDETAMHEELCNRFDYDGIFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCV 357
Query: 361 ELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYY 420
ELAIANPA PGEFRVFNQFTEQFSVNQLAALVTKAG KLGL+V+TI+VPNPRVEAEEHYY
Sbjct: 358 ELAIANPANPGEFRVFNQFTEQFSVNQLAALVTKAGGKLGLNVETITVPNPRVEAEEHYY 417
Query: 421 NAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTVAA 479
NAKHTKL+ELGL+PH+LSDSLLDSLLNFAIQ+KDRVD KQIMPS+SWRKIG KPKTV A
Sbjct: 418 NAKHTKLVELGLKPHLLSDSLLDSLLNFAIQYKDRVDKKQIMPSISWRKIGVKPKTVTA 476
|
Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356503411|ref|XP_003520503.1| PREDICTED: UDP-sulfoquinovose synthase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 776 bits (2005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/480 (79%), Positives = 418/480 (87%), Gaps = 10/480 (2%)
Query: 1 MAHLLSTSCSLNIPSCRKPSFQQLNQGLIGLPTSFTVKTSKSPIQTVILSAQRSQR---- 56
MA LLS+SCSL I S KP + N + SK+P + + L Q+ ++
Sbjct: 1 MAQLLSSSCSLTICSRNKPYLKPFNNCSTLFSITLACNNSKTPFRRLFLQEQKPRKGSLV 60
Query: 57 CHTVYATATPFTPTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIV 116
H + + TP Q+ SG DP K +RVM+IGGDGYCGWATALHLSNKGYEVAIV
Sbjct: 61 VHAAAVSTSQETPVQTSSG------DPFKPQRVMVIGGDGYCGWATALHLSNKGYEVAIV 114
Query: 117 DSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEP 176
DSL+RRLFDHQLGLDSLTPI+SI +RL+ WKSLTGK IELYIGDICDFEFLSE+FKS+EP
Sbjct: 115 DSLVRRLFDHQLGLDSLTPISSIQNRLQRWKSLTGKTIELYIGDICDFEFLSETFKSYEP 174
Query: 177 DAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236
DAVVHFGEQRSAPYSMIDRSRAV+TQ NNVIGTLNVLFA+KEFR++CHLVKLGTMGEYGT
Sbjct: 175 DAVVHFGEQRSAPYSMIDRSRAVYTQQNNVIGTLNVLFAIKEFREQCHLVKLGTMGEYGT 234
Query: 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGV 296
PNIDIEEGYITI HNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGV
Sbjct: 235 PNIDIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGV 294
Query: 297 VYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDT 356
VYGVRTDETAMHEEL NR DYDG+FGTALNRFCVQAAVGHPLTVYGKGGQTRG+LDIRDT
Sbjct: 295 VYGVRTDETAMHEELYNRFDYDGIFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDT 354
Query: 357 VQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAE 416
VQCVELAIANPA+PGEFRVFNQFTEQFSVNQLA LVTKAGEKLG++VKTI+VPNPRVEAE
Sbjct: 355 VQCVELAIANPAKPGEFRVFNQFTEQFSVNQLANLVTKAGEKLGIEVKTINVPNPRVEAE 414
Query: 417 EHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKT 476
EHYYN K+TKL++LGL+PH LSDSLLDSLLNFA+Q+KDRVD+KQIMPSVSW+KIG K KT
Sbjct: 415 EHYYNCKNTKLVDLGLRPHFLSDSLLDSLLNFAVQYKDRVDTKQIMPSVSWKKIGVKTKT 474
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 479 | ||||||
| TAIR|locus:2123797 | 477 | SQD1 "sulfoquinovosyldiacylgly | 0.989 | 0.993 | 0.732 | 1.4e-188 | |
| UNIPROTKB|B3KV61 | 363 | UXS1 "UDP-glucuronate decarbox | 0.217 | 0.286 | 0.295 | 2.3e-07 | |
| UNIPROTKB|F1SU22 | 397 | UXS1 "Uncharacterized protein" | 0.217 | 0.261 | 0.295 | 3.3e-07 | |
| UNIPROTKB|Q8NBZ7 | 420 | UXS1 "UDP-glucuronic acid deca | 0.217 | 0.247 | 0.295 | 4.2e-07 | |
| MGI|MGI:1915133 | 420 | Uxs1 "UDP-glucuronate decarbox | 0.217 | 0.247 | 0.295 | 4.2e-07 | |
| RGD|628680 | 420 | Uxs1 "UDP-glucuronate decarbox | 0.217 | 0.247 | 0.295 | 4.2e-07 | |
| UNIPROTKB|Q5PQX0 | 420 | Uxs1 "UDP-glucuronic acid deca | 0.217 | 0.247 | 0.295 | 4.2e-07 | |
| UNIPROTKB|E1BV28 | 421 | UXS1 "Uncharacterized protein" | 0.217 | 0.247 | 0.295 | 4.3e-07 | |
| UNIPROTKB|E1BMI4 | 420 | UXS1 "Uncharacterized protein" | 0.217 | 0.247 | 0.295 | 5.3e-07 | |
| UNIPROTKB|F1PU61 | 414 | UXS1 "Uncharacterized protein" | 0.102 | 0.118 | 0.42 | 1.4e-06 |
| TAIR|locus:2123797 SQD1 "sulfoquinovosyldiacylglycerol 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1828 (648.5 bits), Expect = 1.4e-188, P = 1.4e-188
Identities = 350/478 (73%), Positives = 393/478 (82%)
Query: 1 MAHLLSTSCSLNIPSCRKPSFQQLNQGLIGLPTSFTVKT-SKSPIQTVILSAQRSQRCHT 59
MAHLLS SC ++ S S + + + T F + S+S ++ ++ ++ ++
Sbjct: 1 MAHLLSASCP-SVISLSSSSSKNSVKPFVSGQTFFNAQLLSRSSLKGLLFQEKKPRKSCV 59
Query: 60 VYATATPFTPTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119
ATA P T Q ++N SK KRVM+IGGDGYCGWATALHLS K YEV IVD+L
Sbjct: 60 FRATAVPIT--QQAPPETSTNNSSSKPKRVMVIGGDGYCGWATALHLSKKNYEVCIVDNL 117
Query: 120 IRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDXXXXXXXXXXXXPDAV 179
+RRLFDHQLGL+SLTPIASIHDR+ WK+LTGK+IELY+GDICD PD+V
Sbjct: 118 VRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSV 177
Query: 180 VHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI 239
VHFGEQRSAPYSMIDRSRAV+TQHNNVIGTLNVLFA+KEF +ECHLVKLGTMGEYGTPNI
Sbjct: 178 VHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNI 237
Query: 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYG 299
DIEEGYITI HNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYG
Sbjct: 238 DIEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYG 297
Query: 300 VRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQC 359
V+TDET MHEEL NRLDYD VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQC
Sbjct: 298 VKTDETEMHEELRNRLDYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQC 357
Query: 360 VELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHY 419
VE+AIANPA+ GEFRVFNQFTEQFSVN+LA+LVTKAG KLGLDVK ++VPNPRVEAEEHY
Sbjct: 358 VEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHY 417
Query: 420 YNAKHTKLIELGLQPHIXXXXXXXXXXNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTV 477
YNAKHTKL+ELGL+PH NFA+QFKDRVD+KQIMPSVSW+KIG K K++
Sbjct: 418 YNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSM 475
|
|
| UNIPROTKB|B3KV61 UXS1 "UDP-glucuronate decarboxylase 1, isoform CRA_a" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 99 (39.9 bits), Expect = 2.3e-07, Sum P(3) = 2.3e-07
Identities = 34/115 (29%), Positives = 58/115 (50%)
Query: 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CVELAIANPAQPGEFRVFNQFT 380
G ++ F +QA G PLTVYG G QTR + + D V V L +N + P + N
Sbjct: 214 GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP--VNLGNP-- 269
Query: 381 EQFSVNQLAALVTK-AGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQP 434
E+ ++ + A L+ G G +++ +S + + ++ + K KL+ LG +P
Sbjct: 270 EEHTILEFAQLIKNLVGS--GSEIQFLS--EAQDDPQKRKPDIKKAKLM-LGWEP 319
|
|
| UNIPROTKB|F1SU22 UXS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 99 (39.9 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 34/115 (29%), Positives = 58/115 (50%)
Query: 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CVELAIANPAQPGEFRVFNQFT 380
G ++ F +QA G PLTVYG G QTR + + D V V L +N + P + N
Sbjct: 248 GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP--VNLGNP-- 303
Query: 381 EQFSVNQLAALVTK-AGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQP 434
E+ ++ + A L+ G G +++ +S + + ++ + K KL+ LG +P
Sbjct: 304 EEHTILEFAQLIKNLVGS--GSEIQFLS--EAQDDPQKRKPDIKKAKLM-LGWEP 353
|
|
| UNIPROTKB|Q8NBZ7 UXS1 "UDP-glucuronic acid decarboxylase 1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 99 (39.9 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 34/115 (29%), Positives = 58/115 (50%)
Query: 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CVELAIANPAQPGEFRVFNQFT 380
G ++ F +QA G PLTVYG G QTR + + D V V L +N + P + N
Sbjct: 271 GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP--VNLGNP-- 326
Query: 381 EQFSVNQLAALVTK-AGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQP 434
E+ ++ + A L+ G G +++ +S + + ++ + K KL+ LG +P
Sbjct: 327 EEHTILEFAQLIKNLVGS--GSEIQFLS--EAQDDPQKRKPDIKKAKLM-LGWEP 376
|
|
| MGI|MGI:1915133 Uxs1 "UDP-glucuronate decarboxylase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 99 (39.9 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 34/115 (29%), Positives = 58/115 (50%)
Query: 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CVELAIANPAQPGEFRVFNQFT 380
G ++ F +QA G PLTVYG G QTR + + D V V L +N + P + N
Sbjct: 271 GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP--VNLGNP-- 326
Query: 381 EQFSVNQLAALVTK-AGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQP 434
E+ ++ + A L+ G G +++ +S + + ++ + K KL+ LG +P
Sbjct: 327 EEHTILEFAQLIKNLVGS--GSEIQFLS--EAQDDPQKRKPDIKKAKLM-LGWEP 376
|
|
| RGD|628680 Uxs1 "UDP-glucuronate decarboxylase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 99 (39.9 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 34/115 (29%), Positives = 58/115 (50%)
Query: 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CVELAIANPAQPGEFRVFNQFT 380
G ++ F +QA G PLTVYG G QTR + + D V V L +N + P + N
Sbjct: 271 GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP--VNLGNP-- 326
Query: 381 EQFSVNQLAALVTK-AGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQP 434
E+ ++ + A L+ G G +++ +S + + ++ + K KL+ LG +P
Sbjct: 327 EEHTILEFAQLIKNLVGS--GSEIQFLS--EAQDDPQKRKPDIKKAKLM-LGWEP 376
|
|
| UNIPROTKB|Q5PQX0 Uxs1 "UDP-glucuronic acid decarboxylase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 99 (39.9 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 34/115 (29%), Positives = 58/115 (50%)
Query: 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CVELAIANPAQPGEFRVFNQFT 380
G ++ F +QA G PLTVYG G QTR + + D V V L +N + P + N
Sbjct: 271 GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP--VNLGNP-- 326
Query: 381 EQFSVNQLAALVTK-AGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQP 434
E+ ++ + A L+ G G +++ +S + + ++ + K KL+ LG +P
Sbjct: 327 EEHTILEFAQLIKNLVGS--GSEIQFLS--EAQDDPQKRKPDIKKAKLM-LGWEP 376
|
|
| UNIPROTKB|E1BV28 UXS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 99 (39.9 bits), Expect = 4.3e-07, Sum P(3) = 4.3e-07
Identities = 34/115 (29%), Positives = 59/115 (51%)
Query: 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CVELAIANPAQPGEFRVFNQFT 380
G ++ F +QA G PLTVYG G QTR + + D V V L +N + P + N
Sbjct: 272 GRVVSNFILQALQGEPLTVYGPGTQTRAFQYVSDLVNGLVALMNSNVSSP--VNLGNP-- 327
Query: 381 EQFSVNQLAALVTK-AGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQP 434
E+ ++ + A L+ K G G +++ +S + + ++ + + KL+ LG +P
Sbjct: 328 EEHTILEFAQLIKKLVGS--GSEIQFLS--EAQDDPQKRKPDIRKAKLL-LGWEP 377
|
|
| UNIPROTKB|E1BMI4 UXS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 99 (39.9 bits), Expect = 5.3e-07, Sum P(3) = 5.3e-07
Identities = 34/115 (29%), Positives = 58/115 (50%)
Query: 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CVELAIANPAQPGEFRVFNQFT 380
G ++ F +QA G PLTVYG G QTR + + D V V L +N + P + N
Sbjct: 271 GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP--VNLGNP-- 326
Query: 381 EQFSVNQLAALVTK-AGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQP 434
E+ ++ + A L+ G G +++ +S + + ++ + K KL+ LG +P
Sbjct: 327 EEHTILEFAQLIKNLVGS--GSEIQFLS--EAQDDPQKRKPDIKKAKLM-LGWEP 376
|
|
| UNIPROTKB|F1PU61 UXS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 94 (38.1 bits), Expect = 1.4e-06, Sum P(3) = 1.4e-06
Identities = 21/50 (42%), Positives = 28/50 (56%)
Query: 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CVELAIANPAQP 370
G ++ F +QA G PLTVYG G QTR + + D V V L +N + P
Sbjct: 265 GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNVSSP 314
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O48917 | SQD1_ARATH | 3, ., 1, 3, ., 1, ., 1 | 0.7782 | 0.9895 | 0.9937 | yes | no |
| Q84KI6 | SQD1_SPIOL | 3, ., 1, 3, ., 1, ., 1 | 0.7717 | 1.0 | 0.9937 | N/A | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| GSVIVG00032201001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (485 aa) | ||||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| GSVIVG00021475001 | SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (519 aa) | • | • | • | • | 0.994 | |||||
| GSVIVG00034877001 | SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (465 aa) | • | • | 0.910 | |||||||
| GSVIVG00006740001 | SubName- Full=Putative uncharacterized protein (Chromosome chr2 scaffold_176, whole genome shot [...] (348 aa) | • | • | • | 0.903 | ||||||
| GSVIVG00001116001 | SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (350 aa) | • | • | • | 0.902 | ||||||
| GSVIVG00006742001 | SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (349 aa) | • | • | • | 0.901 | ||||||
| GSVIVG00030060001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (459 aa) | • | 0.899 | ||||||||
| GSVIVG00027921001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (675 aa) | • | • | 0.899 | |||||||
| GSVIVG00025477001 | RecName- Full=Galactose-1-phosphate uridylyltransferase; EC=2.7.7.12; (332 aa) | • | 0.899 | ||||||||
| GSVIVG00021053001 | SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (459 aa) | • | 0.899 | ||||||||
| GSVIVG00000750001 | SubName- Full=Chromosome undetermined scaffold_107, whole genome shotgun sequence; (657 aa) | • | • | 0.899 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 479 | |||
| PLN02572 | 442 | PLN02572, PLN02572, UDP-sulfoquinovose synthase | 0.0 | |
| cd05255 | 382 | cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synth | 0.0 | |
| COG0451 | 314 | COG0451, WcaG, Nucleoside-diphosphate-sugar epimer | 1e-39 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 1e-30 | |
| pfam01370 | 233 | pfam01370, Epimerase, NAD dependent epimerase/dehy | 4e-21 | |
| cd05256 | 304 | cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-e | 4e-21 | |
| cd05247 | 323 | cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, | 8e-21 | |
| cd05258 | 337 | cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, e | 6e-20 | |
| COG1088 | 340 | COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cel | 2e-17 | |
| COG1087 | 329 | COG1087, GalE, UDP-glucose 4-epimerase [Cell envel | 5e-17 | |
| cd05246 | 315 | cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydra | 5e-17 | |
| TIGR01179 | 328 | TIGR01179, galE, UDP-glucose-4-epimerase GalE | 7e-15 | |
| TIGR01181 | 317 | TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehyd | 8e-15 | |
| cd05253 | 332 | cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimera | 2e-12 | |
| PLN02240 | 352 | PLN02240, PLN02240, UDP-glucose 4-epimerase | 3e-11 | |
| cd05234 | 305 | cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, | 6e-11 | |
| PRK10217 | 355 | PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; | 1e-10 | |
| PRK10675 | 338 | PRK10675, PRK10675, UDP-galactose-4-epimerase; Pro | 3e-10 | |
| cd05252 | 336 | cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydrata | 2e-08 | |
| cd05237 | 287 | cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-l | 1e-07 | |
| TIGR04180 | 297 | TIGR04180, EDH_00030, NAD dependent epimerase/dehy | 1e-07 | |
| cd05264 | 300 | cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase | 1e-07 | |
| TIGR02622 | 349 | TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydra | 9e-07 | |
| COG1089 | 345 | COG1089, Gmd, GDP-D-mannose dehydratase [Cell enve | 2e-06 | |
| cd08957 | 307 | cd08957, WbmH_like_SDR_e, Bordetella bronchiseptic | 2e-06 | |
| cd05260 | 316 | cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase | 3e-06 | |
| cd05230 | 305 | cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase | 4e-06 | |
| PRK10084 | 352 | PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; | 2e-05 | |
| pfam02719 | 280 | pfam02719, Polysacc_synt_2, Polysaccharide biosynt | 2e-04 | |
| cd05228 | 318 | cd05228, AR_FR_like_1_SDR_e, uncharacterized subgr | 3e-04 | |
| cd08946 | 200 | cd08946, SDR_e, extended (e) SDRs | 5e-04 | |
| COG1086 | 588 | COG1086, COG1086, Predicted nucleoside-diphosphate | 0.002 | |
| cd05226 | 176 | cd05226, SDR_e_a, Extended (e) and atypical (a) SD | 0.003 |
| >gnl|CDD|215310 PLN02572, PLN02572, UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Score = 868 bits (2244), Expect = 0.0
Identities = 362/479 (75%), Positives = 396/479 (82%), Gaps = 41/479 (8%)
Query: 1 MAHLLSTSCSLNIPSCRKPSFQQLNQGLIGLPTSFTVKTSKSPIQTVILSAQRSQRCHTV 60
MAHLLSTS S + P+ Q
Sbjct: 3 MAHLLSTSTSSKAFTSASPASAQST----------------------------------- 27
Query: 61 YATATPFTPTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120
T+ + S+ SK K+VM+IGGDGYCGWATALHLS +GYEVAIVD+L
Sbjct: 28 ------PAVTELATPSAPGSSSSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLC 81
Query: 121 RRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVV 180
RRLFDHQLGLDSLTPIASIH+R+R WK ++GK IELY+GDICDFEFLSE+FKSFEPDAVV
Sbjct: 82 RRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDICDFEFLSEAFKSFEPDAVV 141
Query: 181 HFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNID 240
HFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFA+KEF +CHLVKLGTMGEYGTPNID
Sbjct: 142 HFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNID 201
Query: 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGV 300
IEEGYITI HNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGV
Sbjct: 202 IEEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGV 261
Query: 301 RTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCV 360
RTDET M EEL NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRG+LDIRDTV+C+
Sbjct: 262 RTDETMMDEELINRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCI 321
Query: 361 ELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYY 420
E+AIANPA+PGEFRVFNQFTEQFSVN+LA LVTKAGEKLGLDV+ ISVPNPRVEAEEHYY
Sbjct: 322 EIAIANPAKPGEFRVFNQFTEQFSVNELAKLVTKAGEKLGLDVEVISVPNPRVEAEEHYY 381
Query: 421 NAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTVAA 479
NAKHTKL ELGL+PH+LSDSLLDSLLNFA+++KDRVD+ I+P+VSW+KIG KPKT+AA
Sbjct: 382 NAKHTKLCELGLEPHLLSDSLLDSLLNFAVKYKDRVDTTLILPAVSWKKIGVKPKTIAA 440
|
Length = 442 |
| >gnl|CDD|187565 cd05255, SQD1_like_SDR_e, UDP_sulfoquinovose_synthase (Arabidopsis thaliana SQD1 and related proteins), extended (e) SDRs | Back alignment and domain information |
|---|
Score = 719 bits (1859), Expect = 0.0
Identities = 287/381 (75%), Positives = 330/381 (86%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
+V+I+GGDGYCGW TALHLS +G+EV IVD+L+RR D +LGL+SLTPIASIH+RLR WK
Sbjct: 2 KVLILGGDGYCGWPTALHLSKRGHEVCIVDNLVRRRIDVELGLESLTPIASIHERLRAWK 61
Query: 148 SLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
LTGK IE Y+GD CD+EFL+E S EPDAVVHF EQRSAPYSMIDR A +TQHNNVI
Sbjct: 62 ELTGKTIEFYVGDACDYEFLAELLASHEPDAVVHFAEQRSAPYSMIDREHANYTQHNNVI 121
Query: 208 GTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFY 267
GTLN+LFA+KEF +CHLVKLGTMGEYGTPNIDI EGYITI HNGR DTLPYPKQA S+Y
Sbjct: 122 GTLNLLFAIKEFDPDCHLVKLGTMGEYGTPNIDIPEGYITIEHNGRRDTLPYPKQAGSWY 181
Query: 268 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNR 327
HLSKVHDSHNI F CKAWGIR TDLNQGVVYG +T+ET E L NR DYDGVFGT LNR
Sbjct: 182 HLSKVHDSHNIMFACKAWGIRITDLNQGVVYGTKTEETEADERLINRFDYDGVFGTVLNR 241
Query: 328 FCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQ 387
FCVQAA+GHPLTVYGKGGQTRG++ IRDTVQC+ELA+ NPA+ GE+RVFNQFTEQFSV +
Sbjct: 242 FCVQAAIGHPLTVYGKGGQTRGFISIRDTVQCLELALENPAKAGEYRVFNQFTEQFSVGE 301
Query: 388 LAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLN 447
LA +V +AG KLGLDVK +PNPRVEAEEHYYNAK+TKL++LGL+PH LS+SLLDS+LN
Sbjct: 302 LAEMVAEAGSKLGLDVKVEHLPNPRVEAEEHYYNAKNTKLLDLGLEPHYLSESLLDSILN 361
Query: 448 FAIQFKDRVDSKQIMPSVSWR 468
FA+++ DRVD K+I+P V W+
Sbjct: 362 FAVKYADRVDEKRILPKVLWK 382
|
Arabidopsis thaliana UDP-sulfoquinovose-synthase ( SQD1), an extended SDR, catalyzes the transfer of SO(3)(-) to UDP-glucose in the biosynthesis of plant sulfolipids. Members of this subgroup share the conserved SDR catalytic residues, and a partial match to the characteristic extended-SDR NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 382 |
| >gnl|CDD|223528 COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 145 bits (366), Expect = 1e-39
Identities = 81/374 (21%), Positives = 132/374 (35%), Gaps = 65/374 (17%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
R+++ GG G+ G L G++V +D L L D L
Sbjct: 1 MRILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGL-----------------DPLL-- 41
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
+E + D+ D + + E K PDAV+H Q S P S S NV
Sbjct: 42 -----SGVEFVVLDLTDRDLVDELAK-GVPDAVIHLAAQSSVPDSN--ASDPAEFLDVNV 93
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYG--TPNIDIEEGYITINHNGRTDTLPYPKQAS 264
GTLN+L A + + V ++ P + I+E P +
Sbjct: 94 DGTLNLLEAARAAGVK-RFVFASSVSVVYGDPPPLPIDEDL-------------GPPRPL 139
Query: 265 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324
+ Y +SK+ + + +G+ L VYG D +
Sbjct: 140 NPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPG--------------DKPDLSSGV 185
Query: 325 LNRFCVQAAVGHPL-TVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQF 383
++ F Q G P+ + G G QTR ++ + D + LA+ NP G T +
Sbjct: 186 VSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENP--DGGVFNIGSGTAEI 243
Query: 384 SVNQLAALVTKAGEKLGLDVKTIS-VPNPRVEAEEHYYNAKHTKLI-ELGLQPHILSDSL 441
+V +LA V E +G I +P R +K LG +P + +
Sbjct: 244 TVRELAEAV---AEAVGSKAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVSLEEG 300
Query: 442 LDSLLNFAIQFKDR 455
L L + ++ +
Sbjct: 301 LADTLEWLLKKLEL 314
|
Length = 314 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 1e-30
Identities = 54/201 (26%), Positives = 80/201 (39%), Gaps = 34/201 (16%)
Query: 177 DAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236
D VVH P S + NV+GTLN+L A ++ V + YG+
Sbjct: 32 DVVVHLAALVGVPASWDNPDE---DFETNVVGTLNLLEAARK-AGVKRFVYASSASVYGS 87
Query: 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGV 296
P EE +T P P S Y +SK+ H + +++G+ L
Sbjct: 88 PEGLPEE----------EETPPRP---LSPYGVSKLAAEHLLRSYGESYGLPVVILRLAN 134
Query: 297 VYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDT 356
VYG +N F +A G PLTV+G G QTR ++ + D
Sbjct: 135 VYGPGQRP---------------RLDGVVNDFIRRALEGKPLTVFGGGNQTRDFIHVDDV 179
Query: 357 VQCVELAIANPAQPGEFRVFN 377
V+ + A+ NP + G V+N
Sbjct: 180 VRAILHALENPLEGG--GVYN 198
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|216461 pfam01370, Epimerase, NAD dependent epimerase/dehydratase family | Back alignment and domain information |
|---|
Score = 91.6 bits (228), Expect = 4e-21
Identities = 67/289 (23%), Positives = 103/289 (35%), Gaps = 63/289 (21%)
Query: 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS 148
+++ GG G+ G L +GYEV L RR R +S
Sbjct: 1 ILVTGGTGFIGSHLVRRLLQEGYEV---IVLGRR---------------------RRSES 36
Query: 149 LTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRS--RAVFTQHNNV 206
L I + GD+ D + L +PDAV+H A S + S NV
Sbjct: 37 LNTGRIRFHEGDLTDPDALERLLAEVQPDAVIHL-----AAQSGVGASFEDPADFIRANV 91
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNID-IEEGYITINHNGRTDTLPYPKQASS 265
+GTL +L A + + V + YG I E DT P S
Sbjct: 92 LGTLRLLEAARRAGVK-RFVFASSSEVYGDVADPPITE-----------DTPLGP---LS 136
Query: 266 FYHLSKVH-DSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324
Y +K+ + A+ +A+G+RA L VYG + D
Sbjct: 137 PYAAAKLAAERLVEAY-ARAYGLRAVILRLFNVYGPG--------------NPDPFVTHV 181
Query: 325 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEF 373
+ + G P+ + G G Q R +L + D + + LA+ +P +
Sbjct: 182 IPALIRRILEGKPILLLGDGTQRRDFLYVDDVARAILLALEHPDGGEIY 230
|
This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions. Length = 233 |
| >gnl|CDD|187566 cd05256, UDP_AE_SDR_e, UDP-N-acetylglucosamine 4-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 4e-21
Identities = 94/351 (26%), Positives = 141/351 (40%), Gaps = 66/351 (18%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI--RRLFDHQLGLDSLTPIASIHDRLRC 145
RV++ GG G+ G L +G+EV ++D+L ++ ++L +
Sbjct: 1 RVLVTGGAGFIGSHLVERLLERGHEVIVLDNLSTGKK--------ENLPEVKP------- 45
Query: 146 WKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNN 205
N++ GDI D E + +F+ D V H Q S P S+ D + N
Sbjct: 46 -------NVKFIEGDIRDDELVEFAFE--GVDYVFHQAAQASVPRSIED---PIKDHEVN 93
Query: 206 VIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASS 265
V+GTLN+L A ++ + V + YG D P P S
Sbjct: 94 VLGTLNLLEAARKAGVK-RFVYASSSSVYG-----DPPYLPK-----DEDHPPNPL---S 139
Query: 266 FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325
Y +SK + +G+ L VYG R D Y V
Sbjct: 140 PYAVSKYAGELYCQVFARLYGLPTVSLRYFNVYGPRQDPNG---------GYAAVIP--- 187
Query: 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFS 384
F +A G P T+YG G QTR + + D V+ LA A GE V+N T ++ S
Sbjct: 188 -IFIERALKGEPPTIYGDGEQTRDFTYVEDVVEANLLA-ATAGAGGE--VYNIGTGKRTS 243
Query: 385 VNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQP 434
VN+LA L+ E LG +++ + P PR H A +K + LG +P
Sbjct: 244 VNELAELI---REILGKELEPVYAP-PRPGDVRHSL-ADISKAKKLLGWEP 289
|
This subgroup contains UDP-N-acetylglucosamine 4-epimerase of Pseudomonas aeruginosa, WbpP, an extended SDR, that catalyzes the NAD+ dependent conversion of UDP-GlcNAc and UDPGalNA to UDP-Glc and UDP-Gal. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 304 |
| >gnl|CDD|187558 cd05247, UDP_G4E_1_SDR_e, UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 8e-21
Identities = 77/310 (24%), Positives = 114/310 (36%), Gaps = 77/310 (24%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
+V++ GG GY G T + L GY+V ++D+L ++L I I
Sbjct: 1 KVLVTGGAGYIGSHTVVELLEAGYDVVVLDNLSNGH------REALPRIEKIR------- 47
Query: 148 SLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHF------GEQRSAP---YSMIDRSRA 198
IE Y GDI D L + F + DAV+HF GE P Y
Sbjct: 48 ------IEFYEGDIRDRAALDKVFAEHKIDAVIHFAALKAVGESVQKPLKYY-------- 93
Query: 199 VFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLP 258
NNV+GTLN+L AM+ + + V + YG P E IT
Sbjct: 94 ----DNNVVGTLNLLEAMRAHGVK-NFVFSSSAAVYGEP----ETVPITEEA-------- 136
Query: 259 YPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDL---NQGVVYGVRTDETAMHEELCNRL 315
P ++ Y +K+ + KA G+ L N G H +
Sbjct: 137 -PLNPTNPYGRTKLMVEQILRDLAKAPGLNYVILRYFN---PAGA-------HPS--GLI 183
Query: 316 DYDGVFGTALNRFCVQAAVGH--PLTVYGKGGQTRGYLDIRDTVQCVELAIANPA----- 368
D L + +Q A+G L ++G T +RD + V+LA A+
Sbjct: 184 GEDPQIPNNLIPYVLQVALGRREKLAIFGDDYPTPDGTCVRDYIHVVDLADAHVLALEKL 243
Query: 369 -QPGEFRVFN 377
G ++N
Sbjct: 244 ENGGGSEIYN 253
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 323 |
| >gnl|CDD|187568 cd05258, CDP_TE_SDR_e, CDP-tyvelose 2-epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 6e-20
Identities = 74/301 (24%), Positives = 109/301 (36%), Gaps = 45/301 (14%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
RV+I GG G+ G A +G+EV D+L+RR L L+
Sbjct: 1 MRVLITGGAGFIGSNLARFFLKQGWEVIGFDNLMRRGSFGNLA------------WLK-- 46
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
+ + GDI + L + F+ + D ++H Q S S R F N
Sbjct: 47 ANREDGGVRFVHGDIRNRNDLEDLFE--DIDLIIHTAAQPSVTTS-ASSPRLDF--ETNA 101
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYG-TPN---IDIEEGYITIN-----HNGRTDTL 257
+GTLNVL A ++ + T YG PN ++ E + G +++
Sbjct: 102 LGTLNVLEAARQHAPNAPFIFTSTNKVYGDLPNYLPLEELETRYELAPEGWSPAGISESF 161
Query: 258 PYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDY 317
P + S Y SK + + +G++ G + G R T
Sbjct: 162 PLD-FSHSLYGASKGAADQYVQEYGRIFGLKTVVFRCGCLTGPRQFGTEDQ--------- 211
Query: 318 DGVFGTALNRFCVQAAVGHPLTVYGKGG-QTRGYLDIRDTVQCVELAIANPAQPGEFRVF 376
G F A G PLT++G GG Q R L D V NP + VF
Sbjct: 212 -GWVAY----FLKCAVTGKPLTIFGYGGKQVRDVLHSADLVNLYLRQFQNP-DRRKGEVF 265
Query: 377 N 377
N
Sbjct: 266 N 266
|
CDP-tyvelose 2-epimerase is a tetrameric SDR that catalyzes the conversion of CDP-D-paratose to CDP-D-tyvelose, the last step in tyvelose biosynthesis. This subgroup is a member of the extended SDR subfamily, with a characteristic active site tetrad and NAD-binding motif. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 337 |
| >gnl|CDD|224013 COG1088, RfbB, dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 2e-17
Identities = 79/299 (26%), Positives = 122/299 (40%), Gaps = 65/299 (21%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
++++ GG G+ G ++ NK + +V+ LD LT A + L
Sbjct: 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVN------------LDKLT-YAGNLENL--- 44
Query: 147 KSLTGK-NIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRS---RAVFTQ 202
+ GDICD E + FK ++PDAVVHF A S +DRS A F Q
Sbjct: 45 ADVEDSPRYRFVQGDICDRELVDRLFKEYQPDAVVHF-----AAESHVDRSIDGPAPFIQ 99
Query: 203 HNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQ 262
NV+GT +L A +++ + + T YG D+ + + T+T PY
Sbjct: 100 -TNVVGTYTLLEAARKYWGKFRFHHISTDEVYG----DLGL-----DDDAFTETTPY--N 147
Query: 263 ASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318
SS Y SK + +A+ G+ AT YG E+L
Sbjct: 148 PSSPYSASKAASDLLV----RAYVRTYGLPATITRCSNNYGPYQFP----EKL------- 192
Query: 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFN 377
+ + A +G PL VYG G Q R +L + D + ++L + + GE +N
Sbjct: 193 ------IPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDL-VLTKGKIGE--TYN 242
|
Length = 340 |
| >gnl|CDD|224012 COG1087, GalE, UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 5e-17
Identities = 72/305 (23%), Positives = 110/305 (36%), Gaps = 68/305 (22%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
+V++ GG GY G T L G+EV ++D+L H+
Sbjct: 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSN---GHK------------------- 38
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
+L + Y GD+ D L+ F+ + DAVVHF S S+ + + NNV
Sbjct: 39 IALLKLQFKFYEGDLLDRALLTAVFEENKIDAVVHFAASISVGESVQNPLKYY---DNNV 95
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSF 266
+GTLN++ AM + + + T YG P I+ P +
Sbjct: 96 VGTLNLIEAMLQTGVK-KFIFSSTAAVYGEP----TTSPISETS---------PLAPINP 141
Query: 267 YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG---- 322
Y SK+ + KA + L V G DG G
Sbjct: 142 YGRSKLMSEEILRDAAKANPFKVVILRYFNVAGA---------------CPDGTLGQRYP 186
Query: 323 --TALNRFCVQAAVGH--PLTVYGKGGQTRGYLDIRDTVQCVELAIANPA------QPGE 372
T L +AA+G L ++G T+ IRD + +LA A+ + G
Sbjct: 187 GATLLIPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKEGGS 246
Query: 373 FRVFN 377
+FN
Sbjct: 247 NNIFN 251
|
Length = 329 |
| >gnl|CDD|187557 cd05246, dTDP_GD_SDR_e, dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 81.4 bits (202), Expect = 5e-17
Identities = 72/299 (24%), Positives = 117/299 (39%), Gaps = 67/299 (22%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
++++ GG G+ G +L NK + I++ LD LT ++ + L
Sbjct: 1 MKILVTGGAGFIGSNFVRYLLNKYPDYKIIN------------LDKLTYAGNL-ENLEDV 47
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRS---RAVFTQH 203
S GDICD E + F+ + DAV+HF A S +DRS F +
Sbjct: 48 SS--SPRYRFVKGDICDAELVDRLFEEEKIDAVIHF-----AAESHVDRSISDPEPFIR- 99
Query: 204 NNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDI-EEGYITINHNGRTDTLPYPKQ 262
NV+GT +L A +++ + V + T YG D+ ++G T P
Sbjct: 100 TNVLGTYTLLEAARKYGVK-RFVHISTDEVYG----DLLDDGEFTETS---------PLA 145
Query: 263 ASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318
+S Y SK + +A+ G+ YG E+L
Sbjct: 146 PTSPYSASKAAADLLV----RAYHRTYGLPVVITRCSNNYGPYQ----FPEKL------- 190
Query: 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFN 377
+ F + A G PL +YG G R +L + D + +EL + + GE ++N
Sbjct: 191 ------IPLFILNALDGKPLPIYGDGLNVRDWLYVEDHARAIEL-VLEKGRVGE--IYN 240
|
This subgroup contains dTDP-D-glucose 4,6-dehydratase and related proteins, members of the extended-SDR family, with the characteristic Rossmann fold core region, active site tetrad and NAD(P)-binding motif. dTDP-D-glucose 4,6-dehydratase is closely related to other sugar epimerases of the SDR family. dTDP-D-dlucose 4,6,-dehydratase catalyzes the second of four steps in the dTDP-L-rhamnose pathway (the dehydration of dTDP-D-glucose to dTDP-4-keto-6-deoxy-D-glucose) in the synthesis of L-rhamnose, a cell wall component of some pathogenic bacteria. In many gram negative bacteria, L-rhamnose is an important constituent of lipopoylsaccharide O-antigen. The larger N-terminal portion of dTDP-D-Glucose 4,6-dehydratase forms a Rossmann fold NAD-binding domain, while the C-terminus binds the sugar substrate. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 315 |
| >gnl|CDD|213592 TIGR01179, galE, UDP-glucose-4-epimerase GalE | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 7e-15
Identities = 47/170 (27%), Positives = 74/170 (43%), Gaps = 25/170 (14%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
++++ GG GY G T L G+EV I+D+L + + +TP+
Sbjct: 1 KILVTGGAGYIGSHTVRQLLESGHEVVILDNLSNGSREALPRGERITPVT---------- 50
Query: 148 SLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
GD+ D E L F+ + DAV+HF + S+ + NNV+
Sbjct: 51 --------FVEGDLRDRELLDRLFEEHKIDAVIHFAGLIAVGESVQKPLKYY---RNNVV 99
Query: 208 GTLNVLFAMKEFRQECHLVKLGTMGEYGTP-NIDIEEGYI--TINHNGRT 254
GTLN+L AM++ + + + YG P +I I E IN GR+
Sbjct: 100 GTLNLLEAMQQAGVK-KFIFSSSAAVYGEPSSIPISEDSPLGPINPYGRS 148
|
Alternate name: UDPgalactose 4-epimerase This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from This model and described by a separate model [Energy metabolism, Sugars]. Length = 328 |
| >gnl|CDD|130249 TIGR01181, dTDP_gluc_dehyt, dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 8e-15
Identities = 75/296 (25%), Positives = 114/296 (38%), Gaps = 62/296 (20%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLT---PIASIHDRLR 144
R+++ GG G+ G ++ N+ + ++ LD LT + ++ D
Sbjct: 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIV------------LDKLTYAGNLENLADLED 48
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRS---RAVFT 201
GDI D E +S F +PDAVVHF A S +DRS A F
Sbjct: 49 N------PRYRFVKGDIGDRELVSRLFTEHQPDAVVHF-----AAESHVDRSISGPAAFI 97
Query: 202 QHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPK 261
NV+GT +L A++++ E + T YG D+E+G + T+T P
Sbjct: 98 -ETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYG----DLEKG------DAFTETTPL-- 144
Query: 262 QASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321
SS Y SK H + + +G+ A YG E
Sbjct: 145 APSSPYSASKAASDHLVRAYHRTYGLPALITRCSNNYG-----PYQFPE----------- 188
Query: 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFN 377
+ A G PL VYG G Q R +L + D + + L + + GE +N
Sbjct: 189 -KLIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYL-VLEKGRVGE--TYN 240
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 317 |
| >gnl|CDD|187563 cd05253, UDP_GE_SDE_e, UDP glucuronic acid epimerase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 67.7 bits (166), Expect = 2e-12
Identities = 74/297 (24%), Positives = 112/297 (37%), Gaps = 72/297 (24%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASI---HDRL 143
++++ G G+ G+ A L +G EV +G+D+L + RL
Sbjct: 1 MKILVTGAAGFIGFHVAKRLLERGDEV--------------VGIDNLNDYYDVRLKEARL 46
Query: 144 RCWKSLTGKNIELYI-GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQ 202
+ L ++ GD+ D E L FK E DAV+H Q YS+ + V
Sbjct: 47 ---ELLGKSGGFKFVKGDLEDREALRRLFKDHEFDAVIHLAAQAGVRYSLENPHAYV--- 100
Query: 203 HNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG-TPNIDIEEGYITINHNGRTDTLPYPK 261
+N++G LN+L + F + HLV + YG + E + R D
Sbjct: 101 DSNIVGFLNLLELCRHFGVK-HLVYASSSSVYGLNTKMPFSE-------DDRVD------ 146
Query: 262 QASSFYHLSK------VHDSHNIAFTCKAWGIRATDLNQGVVYGV--RTDETAMHEELCN 313
S Y +K H ++ +GI T L VYG R D M
Sbjct: 147 HPISLYAATKKANELMAHTYSHL------YGIPTTGLRFFTVYGPWGRPD---M------ 191
Query: 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP 370
AL F G P+ V+ G +R + I D V+ V A+ PA+P
Sbjct: 192 ----------ALFLFTKAILEGKPIDVFNDGNMSRDFTYIDDIVEGVVRALDTPAKP 238
|
This subgroup contains UDP-D-glucuronic acid 4-epimerase, an extended SDR, which catalyzes the conversion of UDP-alpha-D-glucuronic acid to UDP-alpha-D-galacturonic acid. This group has the SDR's canonical catalytic tetrad and the TGxxGxxG NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 332 |
| >gnl|CDD|177883 PLN02240, PLN02240, UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 3e-11
Identities = 53/188 (28%), Positives = 76/188 (40%), Gaps = 46/188 (24%)
Query: 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDR 142
+ +++ GG GY G T L L GY+V ++D+L S +
Sbjct: 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDN----------------SSEEA 45
Query: 143 LRCWKSLTG---KNIELYIGDICDFEFLSESFKSFEPDAVVHF------GEQRSAP---Y 190
LR K L G N+ + D+ D E L + F S DAV+HF GE + P Y
Sbjct: 46 LRRVKELAGDLGDNLVFHKVDLRDKEALEKVFASTRFDAVIHFAGLKAVGESVAKPLLYY 105
Query: 191 SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECH-LVKLGTMGEYGTP-NIDIEEGYITI 248
NN++GT+N+L M + C LV + YG P + E +
Sbjct: 106 ------------DNNLVGTINLLEVMAKHG--CKKLVFSSSATVYGQPEEVPCTEEFPLS 151
Query: 249 NHN--GRT 254
N GRT
Sbjct: 152 ATNPYGRT 159
|
Length = 352 |
| >gnl|CDD|187545 cd05234, UDP_G4E_2_SDR_e, UDP-glucose 4 epimerase, subgroup 2, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 6e-11
Identities = 68/320 (21%), Positives = 108/320 (33%), Gaps = 65/320 (20%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
R+++ GG G+ G L +G EV +VD+L S R
Sbjct: 1 RILVTGGAGFIGSHLVDRLLEEGNEVVVVDNL------------------SSGRRENIEP 42
Query: 148 SLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQH--NN 205
K D+ D ++ + D V H A + N
Sbjct: 43 EFENKAFRFVKRDLLDT---ADKVAKKDGDTVFHL-----AANPDVRLGATDPDIDLEEN 94
Query: 206 VIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASS 265
V+ T NVL AM+ + +V + YG + YP S
Sbjct: 95 VLATYNVLEAMRANGVK-RIVFASSSTVYGEAKVIPTPED-------------YPPLPIS 140
Query: 266 FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325
Y SK+ I+ +G +A + G R+ ++ + N+L +
Sbjct: 141 VYGASKLAAEALISAYAHLFGFQAWIFRFANIVGPRSTHGVIY-DFINKLKRNP------ 193
Query: 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFS 384
N L V G G Q + YL + D V + LA + +FN + S
Sbjct: 194 NE----------LEVLGDGRQRKSYLYVSDCVDAMLLAWEKSTEG--VNIFNLGNDDTIS 241
Query: 385 VNQLAALVTKAGEKLGLDVK 404
VN++A +V E+LGL +
Sbjct: 242 VNEIAEIVI---EELGLKPR 258
|
UDP-glucose 4 epimerase (aka UDP-galactose-4-epimerase), is a homodimeric extended SDR. It catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. This subgroup is comprised of archaeal and bacterial proteins, and has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|182313 PRK10217, PRK10217, dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 62.7 bits (152), Expect = 1e-10
Identities = 76/292 (26%), Positives = 119/292 (40%), Gaps = 52/292 (17%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYE-VAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRC 145
++++I GG G+ G A ++ N+ + V +VD L + L SL P+A +R
Sbjct: 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDKLT-----YAGNLMSLAPVAQ-SERFAF 55
Query: 146 WKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRS---RAVFTQ 202
K DICD L+ F +PD V+H A S +DRS A F +
Sbjct: 56 EKV-----------DICDRAELARVFTEHQPDCVMHL-----AAESHVDRSIDGPAAFIE 99
Query: 203 HNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGR--TDTLPYP 260
N++GT +L A + + + + + +I +E Y ++ T+T PY
Sbjct: 100 -TNIVGTYTLLEAARAY---WNALTEDKKSAFRFHHISTDEVYGDLHSTDDFFTETTPY- 154
Query: 261 KQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320
SS Y SK H + + +G+ N YG E+L +
Sbjct: 155 -APSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYG----PYHFPEKL--------I 201
Query: 321 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGE 372
LN A G PL VYG G Q R +L + D + + +A + GE
Sbjct: 202 PLMILN-----ALAGKPLPVYGNGQQIRDWLYVEDHARALYC-VATTGKVGE 247
|
Length = 355 |
| >gnl|CDD|182639 PRK10675, PRK10675, UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 3e-10
Identities = 40/137 (29%), Positives = 58/137 (42%), Gaps = 31/137 (22%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RV++ GG GY G T + L G++V I+D+L +S + + +RL
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLC----------NSKRSVLPVIERL---- 47
Query: 148 SLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHF------GEQRSAPYSMIDRSRAVFT 201
GK+ GDI + L+E D V+HF GE P D
Sbjct: 48 --GGKHPTFVEGDIRNEALLTEILHDHAIDTVIHFAGLKAVGESVQKPLEYYD------- 98
Query: 202 QHNNVIGTLNVLFAMKE 218
NNV GTL ++ AM+
Sbjct: 99 --NNVNGTLRLISAMRA 113
|
Length = 338 |
| >gnl|CDD|187562 cd05252, CDP_GD_SDR_e, CDP-D-glucose 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-08
Identities = 37/135 (27%), Positives = 56/135 (41%), Gaps = 23/135 (17%)
Query: 85 KAKRVMIIGGDGYCG-WATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRL 143
+ KRV++ G G+ G W + L L G +V LD T ++ +
Sbjct: 3 QGKRVLVTGHTGFKGSWLS-LWLQELGAKV------------IGYSLDPPTNP-NLFELA 48
Query: 144 RCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQH 203
I GDI D L E+ + +EP+ V H Q P + V T
Sbjct: 49 N-----LDNKISSTRGDIRDLNALREAIREYEPEIVFHLAAQ---PLVRLSYKDPVETFE 100
Query: 204 NNVIGTLNVLFAMKE 218
NV+GT+N+L A++E
Sbjct: 101 TNVMGTVNLLEAIRE 115
|
This subgroup contains CDP-D-glucose 4,6-dehydratase, an extended SDR, which catalyzes the conversion of CDP-D-glucose to CDP-4-keto-6-deoxy-D-glucose. This subgroup has the characteristic active site tetrad and NAD-binding motif of the extended SDRs. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 336 |
| >gnl|CDD|187548 cd05237, UDP_invert_4-6DH_SDR_e, UDP-Glcnac (UDP-linked N-acetylglucosamine) inverting 4,6-dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 38/143 (26%), Positives = 50/143 (34%), Gaps = 45/143 (31%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDH-QLGLDSLT---PIASIH 140
K K +++ GG G G + G + IV FD + L L H
Sbjct: 1 KGKTILVTGGAGSIGSELVRQILKFGPKKLIV-------FDRDENKLHELVRELRSRFPH 53
Query: 141 DRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSA----------PY 190
D+LR IGD+ D E L +FK PD V H +A P
Sbjct: 54 DKLRF-----------IIGDVRDKERLRRAFKERGPDIVFHA----AALKHVPSMEDNPE 98
Query: 191 SMIDRSRAVFTQHNNVIGTLNVL 213
I NV+GT NV+
Sbjct: 99 EAIK---------TNVLGTKNVI 112
|
UDP-Glcnac inverting 4,6-dehydratase was identified in Helicobacter pylori as the hexameric flaA1 gene product (FlaA1). FlaA1 is hexameric, possesses UDP-GlcNAc-inverting 4,6-dehydratase activity, and catalyzes the first step in the creation of a pseudaminic acid derivative in protein glycosylation. Although this subgroup has the NADP-binding motif characteristic of extended SDRs, its members tend to have a Met substituted for the active site Tyr found in most SDR families. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 287 |
| >gnl|CDD|200431 TIGR04180, EDH_00030, NAD dependent epimerase/dehydratase, LLPSF_EDH_00030 family | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 56/187 (29%), Positives = 76/187 (40%), Gaps = 40/187 (21%)
Query: 89 VMIIGGDGYCGWATALHLSNKGYEV-AIV--DSLIRRLFDHQLGLDSLTPIASIHDRLRC 145
V++ G DG+ G L +GYEV A V +S F+ LD+ P
Sbjct: 1 VLVTGADGFIGSHLVEALVRQGYEVRAFVLYNS-----FNSWGWLDTSPPEVK------- 48
Query: 146 WKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNN 205
IE+ GDI D + + ++ K D V H + PYS I V T N
Sbjct: 49 ------DKIEVVTGDIRDPDSVRKAMKGC--DVVFHLAALIAIPYSYIAPDSYVDT---N 97
Query: 206 VIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASS 265
V GTLNVL A ++ E +V T YGT Y+ I+ +P Q S
Sbjct: 98 VTGTLNVLQAARDLGVE-KVVHTSTSEVYGTAQ------YVPIDEK-------HPLQGQS 143
Query: 266 FYHLSKV 272
Y SK+
Sbjct: 144 PYSASKI 150
|
This clade within the NAD dependent epimerase/dehydratase superfamily (pfam01370) is characterized by inclusion of its members within a cassette of seven distinctive enzymes. These include four genes homologous to the elements of the neuraminic (sialic) acid biosynthesis cluster (NeuABCD), an aminotransferase and a nucleotidyltransferase in addition to the epimerase/dehydratase. Together it is very likely that these enzymes direct the biosynthesis of a nine-carbon sugar analagous to CMP-neuraminic acid. These seven genes form the core of the cassette, although they are often accompanied by additional genes that may further modify the product sugar. Although this cassette is widely distributed in bacteria, the family nomenclature arises from the instance in Leptospira interrogans serovar Lai, str. 56601, where it appears as the 30th gene in the 91-gene lipopolysaccharide biosynthesis cluster. Length = 297 |
| >gnl|CDD|187574 cd05264, UDP_G4E_5_SDR_e, UDP-glucose 4-epimerase (G4E), subgroup 5, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-07
Identities = 62/296 (20%), Positives = 101/296 (34%), Gaps = 71/296 (23%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RV+I+GG+G+ G L +G +V R+FD + L P+ +
Sbjct: 1 RVLIVGGNGFIGSHLVDALLEEGPQV--------RVFDRSIPPYEL-PLGGV-------- 43
Query: 148 SLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
+ GD + L + D V+H + S + + T NV
Sbjct: 44 -------DYIKGDYENRADLESALV--GIDTVIHLASTTNPATSNKNPILDIQT---NVA 91
Query: 208 GTLNVLFAMKEFRQECHLV--KLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS- 264
T+ +L A + GT+ YG P + LP +
Sbjct: 92 PTVQLLEACAAAGIGKIIFASSGGTV--YGVP-----------------EQLPISESDPT 132
Query: 265 ---SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321
S Y +SK+ + +G+ T L YG + + GV
Sbjct: 133 LPISSYGISKLAIEKYLRLYQYLYGLDYTVLRISNPYGPG--------QRPDGKQ--GVI 182
Query: 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFN 377
ALN+ G P+ ++G G R Y+ I D V+ + + + G VFN
Sbjct: 183 PIALNK----ILRGEPIEIWGDGESIRDYIYIDDLVEALMALLRS---KGLEEVFN 231
|
This subgroup partially conserves the characteristic active site tetrad and NAD-binding motif of the extended SDRs, and has been identified as possible UDP-glucose 4-epimerase (aka UDP-galactose 4-epimerase), a homodimeric member of the extended SDR family. UDP-glucose 4-epimerase catalyzes the NAD-dependent conversion of UDP-galactose to UDP-glucose, the final step in Leloir galactose synthesis. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 300 |
| >gnl|CDD|233954 TIGR02622, CDP_4_6_dhtase, CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 9e-07
Identities = 40/134 (29%), Positives = 57/134 (42%), Gaps = 27/134 (20%)
Query: 87 KRVMIIGGDGYCG-WATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASI--HDRL 143
K+V++ G G+ G W + L L G EV G SL P S + L
Sbjct: 5 KKVLVTGHTGFKGSWLS-LWLLELGAEVY--------------GY-SLDPPTSPNLFELL 48
Query: 144 RCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQH 203
K IE + GDI D L ++ F+P+ V H Q S D + T
Sbjct: 49 N-----LAKKIEDHFGDIRDAAKLRKAIAEFKPEIVFHLAAQPLVRKSYAD---PLETFE 100
Query: 204 NNVIGTLNVLFAMK 217
NV+GT+N+L A++
Sbjct: 101 TNVMGTVNLLEAIR 114
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 349 |
| >gnl|CDD|224014 COG1089, Gmd, GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 38/152 (25%), Positives = 55/152 (36%), Gaps = 17/152 (11%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
K +I G G G A L KGYEV + RR S IH L
Sbjct: 1 MGKVALITGITGQDGSYLAELLLEKGYEVH---GIKRR--------SSSFNTPRIH--LY 47
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHN 204
L + L+ GD+ D L + +PD + + Q S +T
Sbjct: 48 EDPHLNDPRLHLHYGDLTDSSNLLRILEEVQPDEIYNLAAQSHVGVSFEQ---PEYTADV 104
Query: 205 NVIGTLNVLFAMKEF-RQECHLVKLGTMGEYG 235
+ IGTL +L A++ ++ + T YG
Sbjct: 105 DAIGTLRLLEAIRILGEKKTRFYQASTSELYG 136
|
Length = 345 |
| >gnl|CDD|187660 cd08957, WbmH_like_SDR_e, Bordetella bronchiseptica enzymes WbmH and WbmG-like, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 40/166 (24%), Positives = 65/166 (39%), Gaps = 35/166 (21%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI--RRLFDHQLGLDSLTPIASIHDRLR 144
+V+I GG G G HL +G++V ++D+ RR + L
Sbjct: 1 MKVLITGGAGQIGSHLIEHLLERGHQVVVIDNFATGRR--------EHLPDHP------- 45
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHN 204
N+ + G I D + + F F+PDAVVH P + +
Sbjct: 46 --------NLTVVEGSIADKALVDKLFGDFKPDAVVHTAAAYKDPDDWYEDTLT------ 91
Query: 205 NVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINH 250
NV+G NV+ A K+ + L+ T YG + + I ++H
Sbjct: 92 NVVGGANVVQAAKKAGVK-RLIYFQTALCYGLKPM---QQPIRLDH 133
|
Bordetella bronchiseptica enzymes WbmH and WbmG, and related proteins. This subgroup exhibits the active site tetrad and NAD-binding motif of the extended SDR family. It has been proposed that the active site in Bordetella WbmG and WbmH cannot function as an epimerase, and that it plays a role in O-antigen synthesis pathway from UDP-2,3-diacetamido-2,3-dideoxy-l-galacturonic acid. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 307 |
| >gnl|CDD|187570 cd05260, GDP_MD_SDR_e, GDP-mannose 4,6 dehydratase, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 39/149 (26%), Positives = 58/149 (38%), Gaps = 21/149 (14%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRC-W 146
R +I G G G A L KGYEV ++RR +S + R
Sbjct: 1 RALITGITGQDGSYLAEFLLEKGYEVH---GIVRR--------------SSSFNTDRIDH 43
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
+ I L+ GD+ D L + + PD + H Q S D +T N
Sbjct: 44 LYINKDRITLHYGDLTDSSSLRRAIEKVRPDEIYHLAAQSHVKVSFDD---PEYTAEVNA 100
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYG 235
+GTLN+L A++ + + + EYG
Sbjct: 101 VGTLNLLEAIRILGLDARFYQASSSEEYG 129
|
GDP-mannose 4,6 dehydratase, a homodimeric SDR, catalyzes the NADP(H)-dependent conversion of GDP-(D)-mannose to GDP-4-keto, 6-deoxy-(D)-mannose in the fucose biosynthesis pathway. These proteins have the canonical active site triad and NAD-binding pattern, however the active site Asn is often missing and may be substituted with Asp. A Glu residue has been identified as an important active site base. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 316 |
| >gnl|CDD|187541 cd05230, UGD_SDR_e, UDP-glucuronate decarboxylase (UGD) and related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 85/326 (26%), Positives = 117/326 (35%), Gaps = 91/326 (27%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
KR++I GG G+ G L G+EV VD+
Sbjct: 1 KRILITGGAGFLGSHLCDRLLEDGHEVICVDNF--------------------------- 33
Query: 147 KSLTGK--NIELYIGDICDFEFLSESFKSFEP---DAVVHFGEQRSAPYSMID-RSRAVF 200
TG+ NIE IG +FEF+ D + H + P S + + +
Sbjct: 34 --FTGRKRNIEHLIGHP-NFEFIRHDVTEPLYLEVDQIYHL----ACPASPVHYQYNPIK 86
Query: 201 TQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIE-EGYITINHNGRTDTLPY 259
T NV+GTLN+L K R ++ T YG P + + E Y G +
Sbjct: 87 TLKTNVLGTLNMLGLAK--RVGARVLLASTSEVYGDPEVHPQPESY-----WGNVN---- 135
Query: 260 PKQASSFYHLSK---------VHDSHNIAFTCKAWGIR-ATDLNQGVVYGVRTDETAMHE 309
P S Y K H H + +R A N YG R MH
Sbjct: 136 PIGPRSCYDEGKRVAETLCMAYHRQHGVD-------VRIARIFN---TYGPR-----MHP 180
Query: 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369
+ G ++ F VQA G P+TVYG G QTR + + D VE I
Sbjct: 181 ------ND----GRVVSNFIVQALRGEPITVYGDGTQTRSFQYVSD---LVEGLIRLMNS 227
Query: 370 PGEFRVFNQFT-EQFSVNQLAALVTK 394
N E+F++ +LA LV K
Sbjct: 228 DYFGGPVNLGNPEEFTILELAELVKK 253
|
UGD catalyzes the formation of UDP-xylose from UDP-glucuronate; it is an extended-SDR, and has the characteristic glycine-rich NAD-binding pattern, TGXXGXXG, and active site tetrad. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 305 |
| >gnl|CDD|236649 PRK10084, PRK10084, dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 76/286 (26%), Positives = 113/286 (39%), Gaps = 67/286 (23%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAI-VDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
++++ GG G+ G A H+ N + + VD L + L+SL ++
Sbjct: 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLT-----YAGNLESLADVS--------- 47
Query: 147 KSLTGKNIELYI---GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRS---RAVF 200
+ E Y+ DICD L F +PDAV+H A S +DRS A F
Sbjct: 48 ------DSERYVFEHADICDRAELDRIFAQHQPDAVMHL-----AAESHVDRSITGPAAF 96
Query: 201 TQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINH-----NGR-- 253
+ N++GT +L A + + K + +I +E Y + H N
Sbjct: 97 IE-TNIVGTYVLLEAARNYWSALDEDKKNA---FRFHHISTDEVYGDLPHPDEVENSEEL 152
Query: 254 ---TDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEE 310
T+T Y SS Y SK H + +AW +R YG+ T T
Sbjct: 153 PLFTETTAY--APSSPYSASKASSDHLV----RAW-LRT--------YGLPTIVTNCSN- 196
Query: 311 LCNRLDYDGVFGTALNRFCVQAAV-GHPLTVYGKGGQTRGYLDIRD 355
N Y F L + A+ G PL +YGKG Q R +L + D
Sbjct: 197 --NYGPYH--FPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVED 238
|
Length = 352 |
| >gnl|CDD|217199 pfam02719, Polysacc_synt_2, Polysaccharide biosynthesis protein | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 32/103 (31%)
Query: 122 RLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVH 181
LF + I LR + + +IGD+ D E L + + D V H
Sbjct: 27 ILFSR-----DEFKLYEIRQELR--QEYNDPKLRFFIGDVRDRERLERAMEQHGVDTVFH 79
Query: 182 FGEQRSA-----------PYSMIDRSRAVFTQHNNVIGTLNVL 213
+A P I NV+GT NV
Sbjct: 80 -----AAALKHVPLVEYNPMEAI---------KTNVLGTENVA 108
|
This is a family of diverse bacterial polysaccharide biosynthesis proteins including the CapD protein, WalL protein mannosyl-transferase and several putative epimerases (e.g. WbiI). Length = 280 |
| >gnl|CDD|187539 cd05228, AR_FR_like_1_SDR_e, uncharacterized subgroup of aldehyde reductase and flavonoid reductase related proteins, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 63/285 (22%), Positives = 93/285 (32%), Gaps = 65/285 (22%)
Query: 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS 148
+++ G G+ G L +GY V L+R D L
Sbjct: 1 ILVTGATGFLGSNLVRALLAQGYRVRA---LVRSGSDAVL-------------------- 37
Query: 149 LTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIG 208
L G +E+ GD+ D L+ + K D V H +A S+ + R NV G
Sbjct: 38 LDGLPVEVVEGDLTDAASLAAAMKG--CDRVFHL----AAFTSLWAKDRKEL-YRTNVEG 90
Query: 209 TLNVLFAMKEFRQECHLVKLGTMGEYGTPNID-IEEGYITINHNGRTDTLPYPKQASSFY 267
T NVL A E +V ++ G P I+E T N R Y +
Sbjct: 91 TRNVLDAALEAGVR-RVVHTSSIAALGGPPDGRIDE---TTPWNERPFPNDYYR------ 140
Query: 268 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNR 327
SK + A G+ +N V+G D T+
Sbjct: 141 --SK-LLAELEVLEAAAEGLDVVIVNPSAVFGP--------------GDEG---PTSTGL 180
Query: 328 FCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGE 372
+ G L Y GG ++D+RD + A + GE
Sbjct: 181 DVLDYLNGK-LPAYPPGGT--SFVDVRDVAEGHIAA-MEKGRRGE 221
|
This subgroup contains proteins of unknown function related to aldehyde reductase and flavonoid reductase of the extended SDR-type. Aldehyde reductase I (aka carbonyl reductase) is an NADP-binding SDR; it has an NADP-binding motif consensus that is slightly different from the canonical SDR form and lacks the Asn of the extended SDR active site tetrad. Aldehyde reductase I catalyzes the NADP-dependent reduction of ethyl 4-chloro-3-oxobutanoate to ethyl (R)-4-chloro-3-hydroxybutanoate. The related flavonoid reductases act in the NADP-dependent reduction of flavonoids, ketone-containing plant secondary metabolites. Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 318 |
| >gnl|CDD|212494 cd08946, SDR_e, extended (e) SDRs | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119
+++ GG G+ G L +G+EV ++D L
Sbjct: 1 ILVTGGAGFIGSHLVRRLLERGHEVVVIDRL 31
|
Extended SDRs are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 200 |
| >gnl|CDD|224011 COG1086, COG1086, Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 30/135 (22%), Positives = 49/135 (36%), Gaps = 23/135 (17%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
K V++ GG G G + + I LF + I LR
Sbjct: 251 KTVLVTGGGGSIGSELCRQILKFNPKEII-------LFSR-----DEYKLYLIDMELR-- 296
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAP---YSMIDRSRAVFTQH 203
+ + YIGD+ D + + + + + D V H + P Y+ + A+
Sbjct: 297 EKFPELKLRFYIGDVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNPEE---AI---K 350
Query: 204 NNVIGTLNVLFAMKE 218
NV+GT NV A +
Sbjct: 351 TNVLGTENVAEAAIK 365
|
Length = 588 |
| >gnl|CDD|187537 cd05226, SDR_e_a, Extended (e) and atypical (a) SDRs | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 47/211 (22%), Positives = 72/211 (34%), Gaps = 57/211 (27%)
Query: 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS 148
++I+G G+ G A A L +G+EV L T S D
Sbjct: 1 ILILGATGFIGRALARELLEQGHEV--------------TLLVRNTKRLSKED------- 39
Query: 149 LTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIG 208
+ + + GD+ D + LS++ + D V+H AP D +V G
Sbjct: 40 --QEPVAVVEGDLRDLDSLSDAVQ--GVDVVIHL---AGAPRDTRDFCEV------DVEG 86
Query: 209 TLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYH 268
T NVL A KE + H + + ++G YG SS Y
Sbjct: 87 TRNVLEAAKEAGVK-HFIFISSLGAYGDL------------------HEETEPSPSSPYL 127
Query: 269 LSKVHDSHNIAFTCKAWGIRATDLNQGVVYG 299
K + + T + GV+YG
Sbjct: 128 AVKAKTEAVLR----EASLPYTIVRPGVIYG 154
|
Extended or atypical short-chain dehydrogenases/reductases (SDRs, aka tyrosine-dependent oxidoreductases) are distinct from classical SDRs. In addition to the Rossmann fold (alpha/beta folding pattern with a central beta-sheet) core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids. Extended SDRs are a diverse collection of proteins, and include isomerases, epimerases, oxidoreductases, and lyases; they typically have a TGXXGXXG cofactor binding motif. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Length = 176 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 479 | |||
| PLN02572 | 442 | UDP-sulfoquinovose synthase | 100.0 | |
| COG1087 | 329 | GalE UDP-glucose 4-epimerase [Cell envelope biogen | 100.0 | |
| COG1088 | 340 | RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope | 100.0 | |
| PRK15181 | 348 | Vi polysaccharide biosynthesis protein TviC; Provi | 100.0 | |
| KOG1429 | 350 | consensus dTDP-glucose 4-6-dehydratase/UDP-glucuro | 100.0 | |
| KOG1371 | 343 | consensus UDP-glucose 4-epimerase/UDP-sulfoquinovo | 100.0 | |
| PLN02166 | 436 | dTDP-glucose 4,6-dehydratase | 100.0 | |
| TIGR01472 | 343 | gmd GDP-mannose 4,6-dehydratase. Excluded from thi | 100.0 | |
| TIGR02622 | 349 | CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Member | 100.0 | |
| PLN02653 | 340 | GDP-mannose 4,6-dehydratase | 100.0 | |
| PRK10217 | 355 | dTDP-glucose 4,6-dehydratase; Provisional | 100.0 | |
| PRK11908 | 347 | NAD-dependent epimerase/dehydratase family protein | 100.0 | |
| KOG0747 | 331 | consensus Putative NAD+-dependent epimerases [Carb | 100.0 | |
| PLN02206 | 442 | UDP-glucuronate decarboxylase | 100.0 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 100.0 | |
| PRK10084 | 352 | dTDP-glucose 4,6 dehydratase; Provisional | 100.0 | |
| PLN02695 | 370 | GDP-D-mannose-3',5'-epimerase | 100.0 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 100.0 | |
| PRK08125 | 660 | bifunctional UDP-glucuronic acid decarboxylase/UDP | 100.0 | |
| PLN02240 | 352 | UDP-glucose 4-epimerase | 100.0 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 100.0 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PRK10675 | 338 | UDP-galactose-4-epimerase; Provisional | 100.0 | |
| TIGR01181 | 317 | dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This | 100.0 | |
| PLN00198 | 338 | anthocyanidin reductase; Provisional | 100.0 | |
| PRK09987 | 299 | dTDP-4-dehydrorhamnose reductase; Provisional | 100.0 | |
| PRK11150 | 308 | rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Pro | 100.0 | |
| PLN02725 | 306 | GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductas | 100.0 | |
| PLN02896 | 353 | cinnamyl-alcohol dehydrogenase | 100.0 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 100.0 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 100.0 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 100.0 | |
| TIGR02197 | 314 | heptose_epim ADP-L-glycero-D-manno-heptose-6-epime | 100.0 | |
| KOG1502 | 327 | consensus Flavonol reductase/cinnamoyl-CoA reducta | 100.0 | |
| TIGR01179 | 328 | galE UDP-glucose-4-epimerase. This enzyme intercon | 100.0 | |
| PF01073 | 280 | 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso | 100.0 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 100.0 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 100.0 | |
| TIGR01214 | 287 | rmlD dTDP-4-dehydrorhamnose reductase. This enzyme | 100.0 | |
| TIGR03589 | 324 | PseB UDP-N-acetylglucosamine 4,6-dehydratase. This | 100.0 | |
| COG1089 | 345 | Gmd GDP-D-mannose dehydratase [Cell envelope bioge | 100.0 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 100.0 | |
| KOG1430 | 361 | consensus C-3 sterol dehydrogenase/3-beta-hydroxys | 100.0 | |
| PF01370 | 236 | Epimerase: NAD dependent epimerase/dehydratase fam | 100.0 | |
| PF04321 | 286 | RmlD_sub_bind: RmlD substrate binding domain; Inte | 100.0 | |
| COG1091 | 281 | RfbD dTDP-4-dehydrorhamnose reductase [Cell envelo | 100.0 | |
| PRK05865 | 854 | hypothetical protein; Provisional | 100.0 | |
| PLN02996 | 491 | fatty acyl-CoA reductase | 100.0 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 100.0 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 99.98 | |
| PLN02583 | 297 | cinnamoyl-CoA reductase | 99.98 | |
| KOG1431 | 315 | consensus GDP-L-fucose synthetase [Carbohydrate tr | 99.97 | |
| PLN02657 | 390 | 3,8-divinyl protochlorophyllide a 8-vinyl reductas | 99.97 | |
| PLN02778 | 298 | 3,5-epimerase/4-reductase | 99.97 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.97 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 99.97 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 99.97 | |
| KOG1372 | 376 | consensus GDP-mannose 4,6 dehydratase [Carbohydrat | 99.96 | |
| PLN02503 | 605 | fatty acyl-CoA reductase 2 | 99.96 | |
| TIGR01746 | 367 | Thioester-redct thioester reductase domain. It has | 99.95 | |
| PF07993 | 249 | NAD_binding_4: Male sterility protein; InterPro: I | 99.95 | |
| COG3320 | 382 | Putative dehydrogenase domain of multifunctional n | 99.94 | |
| PRK12320 | 699 | hypothetical protein; Provisional | 99.94 | |
| PLN02260 | 668 | probable rhamnose biosynthetic enzyme | 99.94 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 99.94 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 99.92 | |
| KOG2865 | 391 | consensus NADH:ubiquinone oxidoreductase, NDUFA9/3 | 99.92 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 99.92 | |
| TIGR03443 | 1389 | alpha_am_amid L-aminoadipate-semialdehyde dehydrog | 99.92 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.91 | |
| KOG1221 | 467 | consensus Acyl-CoA reductase [Lipid transport and | 99.91 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 99.91 | |
| PRK09135 | 249 | pteridine reductase; Provisional | 99.91 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12823 | 260 | benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylat | 99.9 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 99.9 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 99.9 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 99.9 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 99.9 | |
| PRK12825 | 249 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.9 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 99.89 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 99.89 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 99.89 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 99.89 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 99.89 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07775 | 274 | short chain dehydrogenase; Provisional | 99.89 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 99.88 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 99.88 | |
| PRK06077 | 252 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.88 | |
| KOG2774 | 366 | consensus NAD dependent epimerase [General functio | 99.88 | |
| PRK12746 | 254 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK12745 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.88 | |
| PRK08063 | 250 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.88 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 99.88 | |
| PRK12935 | 247 | acetoacetyl-CoA reductase; Provisional | 99.88 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 99.88 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 99.88 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.87 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 99.87 | |
| PRK06123 | 248 | short chain dehydrogenase; Provisional | 99.87 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 99.87 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 99.87 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 99.87 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 99.87 | |
| PRK12827 | 249 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 99.86 | |
| PRK08628 | 258 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK05717 | 255 | oxidoreductase; Validated | 99.86 | |
| PRK08220 | 252 | 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | 99.86 | |
| PRK07985 | 294 | oxidoreductase; Provisional | 99.86 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 99.86 | |
| PRK09134 | 258 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 99.86 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 99.86 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 99.86 | |
| PRK05557 | 248 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.86 | |
| PRK06523 | 260 | short chain dehydrogenase; Provisional | 99.86 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK08642 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.85 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK12747 | 252 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06113 | 255 | 7-alpha-hydroxysteroid dehydrogenase; Validated | 99.85 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 99.85 | |
| PRK08217 | 253 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.85 | |
| PRK12937 | 245 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.85 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 99.85 | |
| PRK12481 | 251 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.84 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 99.84 | |
| PRK07577 | 234 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 99.84 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK09730 | 247 | putative NAD(P)-binding oxidoreductase; Provisiona | 99.84 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 99.84 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 99.84 | |
| PRK08643 | 256 | acetoin reductase; Validated | 99.84 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.83 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 99.83 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06550 | 235 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.83 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 99.83 | |
| PRK12744 | 257 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 99.83 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 99.83 | |
| PRK08219 | 227 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 99.83 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 99.83 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 99.83 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 99.83 | |
| PRK12742 | 237 | oxidoreductase; Provisional | 99.83 | |
| TIGR01830 | 239 | 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) re | 99.83 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 99.83 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 99.82 | |
| PRK12938 | 246 | acetyacetyl-CoA reductase; Provisional | 99.82 | |
| PRK08264 | 238 | short chain dehydrogenase; Validated | 99.82 | |
| PRK07041 | 230 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK05565 | 247 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.82 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK07904 | 253 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 99.82 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK12824 | 245 | acetoacetyl-CoA reductase; Provisional | 99.82 | |
| PRK08416 | 260 | 7-alpha-hydroxysteroid dehydrogenase; Provisional | 99.82 | |
| PRK07069 | 251 | short chain dehydrogenase; Validated | 99.82 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.82 | |
| PRK08993 | 253 | 2-deoxy-D-gluconate 3-dehydrogenase; Validated | 99.82 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK06198 | 260 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 99.82 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK12748 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.81 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 99.81 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK07102 | 243 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 99.81 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 99.81 | |
| TIGR02632 | 676 | RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alc | 99.81 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK06125 | 259 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08226 | 263 | short chain dehydrogenase; Provisional | 99.81 | |
| PRK08936 | 261 | glucose-1-dehydrogenase; Provisional | 99.8 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.8 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK07792 | 306 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.8 | |
| PRK08278 | 273 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 99.8 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 99.8 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 99.8 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 99.8 | |
| PRK06947 | 248 | glucose-1-dehydrogenase; Provisional | 99.8 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.8 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.8 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 99.79 | |
| TIGR02685 | 267 | pter_reduc_Leis pteridine reductase. Pteridine red | 99.79 | |
| PRK08703 | 239 | short chain dehydrogenase; Provisional | 99.79 | |
| TIGR01829 | 242 | AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hy | 99.79 | |
| PRK06171 | 266 | sorbitol-6-phosphate 2-dehydrogenase; Provisional | 99.79 | |
| KOG1205 | 282 | consensus Predicted dehydrogenase [Secondary metab | 99.79 | |
| PRK06953 | 222 | short chain dehydrogenase; Provisional | 99.79 | |
| KOG1200 | 256 | consensus Mitochondrial/plastidial beta-ketoacyl-A | 99.79 | |
| PRK07791 | 286 | short chain dehydrogenase; Provisional | 99.78 | |
| TIGR01831 | 239 | fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductas | 99.78 | |
| PRK08945 | 247 | putative oxoacyl-(acyl carrier protein) reductase; | 99.78 | |
| PRK06924 | 251 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 99.78 | |
| PRK08594 | 257 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK08159 | 272 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK12859 | 256 | 3-ketoacyl-(acyl-carrier-protein) reductase; Provi | 99.78 | |
| PRK06603 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.78 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 99.77 | |
| PRK07370 | 258 | enoyl-(acyl carrier protein) reductase; Validated | 99.77 | |
| PRK08690 | 261 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.77 | |
| PRK07023 | 243 | short chain dehydrogenase; Provisional | 99.77 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.77 | |
| PRK07578 | 199 | short chain dehydrogenase; Provisional | 99.76 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.76 | |
| PRK06997 | 260 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.76 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 99.76 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 99.75 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK07201 | 657 | short chain dehydrogenase; Provisional | 99.74 | |
| PRK05855 | 582 | short chain dehydrogenase; Validated | 99.74 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 99.73 | |
| PRK05599 | 246 | hypothetical protein; Provisional | 99.73 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 99.73 | |
| TIGR01500 | 256 | sepiapter_red sepiapterin reductase. This model de | 99.73 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 99.73 | |
| PRK09009 | 235 | C factor cell-cell signaling protein; Provisional | 99.72 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 99.72 | |
| TIGR01289 | 314 | LPOR light-dependent protochlorophyllide reductase | 99.71 | |
| PRK08303 | 305 | short chain dehydrogenase; Provisional | 99.71 | |
| PRK12367 | 245 | short chain dehydrogenase; Provisional | 99.7 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 99.7 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 99.7 | |
| KOG0725 | 270 | consensus Reductases with broad range of substrate | 99.69 | |
| PRK07424 | 406 | bifunctional sterol desaturase/short chain dehydro | 99.69 | |
| PF00106 | 167 | adh_short: short chain dehydrogenase alcohol dehyd | 99.67 | |
| PLN02730 | 303 | enoyl-[acyl-carrier-protein] reductase | 99.66 | |
| smart00822 | 180 | PKS_KR This enzymatic domain is part of bacterial | 99.65 | |
| PLN00015 | 308 | protochlorophyllide reductase | 99.65 | |
| KOG1207 | 245 | consensus Diacetyl reductase/L-xylulose reductase | 99.62 | |
| KOG4169 | 261 | consensus 15-hydroxyprostaglandin dehydrogenase an | 99.61 | |
| KOG1208 | 314 | consensus Dehydrogenases with different specificit | 99.61 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 99.6 | |
| PRK06300 | 299 | enoyl-(acyl carrier protein) reductase; Provisiona | 99.6 | |
| KOG1610 | 322 | consensus Corticosteroid 11-beta-dehydrogenase and | 99.59 | |
| COG1028 | 251 | FabG Dehydrogenases with different specificities ( | 99.58 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 99.56 | |
| KOG1209 | 289 | consensus 1-Acyl dihydroxyacetone phosphate reduct | 99.55 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 99.53 | |
| TIGR02813 | 2582 | omega_3_PfaA polyketide-type polyunsaturated fatty | 99.53 | |
| PRK12428 | 241 | 3-alpha-hydroxysteroid dehydrogenase; Provisional | 99.53 | |
| KOG1203 | 411 | consensus Predicted dehydrogenase [Carbohydrate tr | 99.51 | |
| KOG1210 | 331 | consensus Predicted 3-ketosphinganine reductase [S | 99.5 | |
| PF08659 | 181 | KR: KR domain; InterPro: IPR013968 This domain is | 99.49 | |
| KOG1611 | 249 | consensus Predicted short chain-type dehydrogenase | 99.46 | |
| KOG3019 | 315 | consensus Predicted nucleoside-diphosphate sugar e | 99.43 | |
| KOG1199 | 260 | consensus Short-chain alcohol dehydrogenase/3-hydr | 99.42 | |
| KOG1014 | 312 | consensus 17 beta-hydroxysteroid dehydrogenase typ | 99.41 | |
| KOG4039 | 238 | consensus Serine/threonine kinase TIP30/CC3 [Signa | 99.31 | |
| KOG4288 | 283 | consensus Predicted oxidoreductase [General functi | 99.23 | |
| KOG1204 | 253 | consensus Predicted dehydrogenase [Secondary metab | 99.21 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 99.2 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 98.93 | |
| PLN00106 | 323 | malate dehydrogenase | 98.84 | |
| COG0623 | 259 | FabI Enoyl-[acyl-carrier-protein] | 98.82 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 98.81 | |
| PRK13656 | 398 | trans-2-enoyl-CoA reductase; Provisional | 98.76 | |
| PRK09620 | 229 | hypothetical protein; Provisional | 98.69 | |
| KOG1478 | 341 | consensus 3-keto sterol reductase [Lipid transport | 98.65 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 98.56 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 98.53 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 98.5 | |
| PRK06732 | 229 | phosphopantothenate--cysteine ligase; Validated | 98.44 | |
| PF13950 | 62 | Epimerase_Csub: UDP-glucose 4-epimerase C-term sub | 98.4 | |
| PRK05579 | 399 | bifunctional phosphopantothenoylcysteine decarboxy | 98.24 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 98.21 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 98.2 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 98.2 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 98.16 | |
| TIGR02114 | 227 | coaB_strep phosphopantothenate--cysteine ligase, s | 98.12 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 98.02 | |
| TIGR01758 | 324 | MDH_euk_cyt malate dehydrogenase, NAD-dependent. T | 97.98 | |
| TIGR00521 | 390 | coaBC_dfp phosphopantothenoylcysteine decarboxylas | 97.98 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 97.86 | |
| KOG2733 | 423 | consensus Uncharacterized membrane protein [Functi | 97.85 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.8 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 97.79 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 97.68 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 97.66 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 97.65 | |
| COG4982 | 866 | 3-oxoacyl-[acyl-carrier protein] | 97.64 | |
| PF04127 | 185 | DFP: DNA / pantothenate metabolism flavoprotein; I | 97.51 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 97.49 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.48 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 97.46 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 97.43 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 97.43 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 97.39 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 97.33 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 97.33 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 97.33 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 97.31 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 97.31 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 97.29 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 97.28 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 97.27 | |
| COG3268 | 382 | Uncharacterized conserved protein [Function unknow | 97.27 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 97.25 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 97.19 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 97.18 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 97.17 | |
| PRK08223 | 287 | hypothetical protein; Validated | 97.17 | |
| cd01489 | 312 | Uba2_SUMO Ubiquitin activating enzyme (E1) subunit | 97.13 | |
| PRK05442 | 326 | malate dehydrogenase; Provisional | 97.13 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 97.11 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 97.11 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.08 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 97.07 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 97.06 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 97.05 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 97.05 | |
| KOG1202 | 2376 | consensus Animal-type fatty acid synthase and rela | 97.02 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 97.01 | |
| cd01484 | 234 | E1-2_like Ubiquitin activating enzyme (E1), repeat | 97.0 | |
| KOG4022 | 236 | consensus Dihydropteridine reductase DHPR/QDPR [Am | 97.0 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 96.98 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 96.97 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 96.95 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.92 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.89 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 96.87 | |
| KOG1494 | 345 | consensus NAD-dependent malate dehydrogenase [Ener | 96.86 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 96.85 | |
| COG0039 | 313 | Mdh Malate/lactate dehydrogenases [Energy producti | 96.84 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 96.84 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.83 | |
| PLN00112 | 444 | malate dehydrogenase (NADP); Provisional | 96.81 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 96.78 | |
| PRK07411 | 390 | hypothetical protein; Validated | 96.77 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 96.62 | |
| KOG2018 | 430 | consensus Predicted dinucleotide-utilizing enzyme | 96.59 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 96.59 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.58 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.57 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 96.55 | |
| cd01491 | 286 | Ube1_repeat1 Ubiquitin activating enzyme (E1), rep | 96.47 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 96.46 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 96.43 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 96.42 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 96.38 | |
| PRK13982 | 475 | bifunctional SbtC-like/phosphopantothenoylcysteine | 96.36 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.35 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 96.33 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.32 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 96.31 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 96.3 | |
| PLN02602 | 350 | lactate dehydrogenase | 96.29 | |
| PRK08261 | 450 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 96.27 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.26 | |
| cd05295 | 452 | MDH_like Malate dehydrogenase-like. These MDH-like | 96.26 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 96.25 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.25 | |
| PRK14852 | 989 | hypothetical protein; Provisional | 96.18 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 96.17 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.15 | |
| PRK06153 | 393 | hypothetical protein; Provisional | 96.11 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 96.07 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 96.04 | |
| TIGR01757 | 387 | Malate-DH_plant malate dehydrogenase, NADP-depende | 96.02 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 96.0 | |
| cd01490 | 435 | Ube1_repeat2 Ubiquitin activating enzyme (E1), rep | 95.99 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 95.9 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 95.87 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 95.87 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 95.78 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 95.76 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 95.76 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 95.76 | |
| KOG1198 | 347 | consensus Zinc-binding oxidoreductase [Energy prod | 95.75 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 95.73 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 95.72 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 95.69 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.68 | |
| cd01488 | 291 | Uba3_RUB Ubiquitin activating enzyme (E1) subunit | 95.67 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 95.66 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 95.65 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 95.62 | |
| PRK09288 | 395 | purT phosphoribosylglycinamide formyltransferase 2 | 95.61 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 95.6 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 95.59 | |
| COG0027 | 394 | PurT Formate-dependent phosphoribosylglycinamide f | 95.58 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.57 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 95.55 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 95.51 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 95.5 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 95.47 | |
| KOG2013 | 603 | consensus SMT3/SUMO-activating complex, catalytic | 95.44 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 95.44 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 95.44 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 95.42 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 95.37 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 95.35 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 95.35 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 95.32 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 95.31 | |
| PRK06849 | 389 | hypothetical protein; Provisional | 95.28 | |
| cd08259 | 332 | Zn_ADH5 Alcohol dehydrogenases of the MDR family. | 95.27 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 95.24 | |
| PRK08057 | 248 | cobalt-precorrin-6x reductase; Reviewed | 95.2 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 95.19 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 95.18 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 95.15 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 95.13 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 95.07 | |
| TIGR01142 | 380 | purT phosphoribosylglycinamide formyltransferase 2 | 95.06 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.04 | |
| PLN02928 | 347 | oxidoreductase family protein | 95.01 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 95.01 | |
| cd01493 | 425 | APPBP1_RUB Ubiquitin activating enzyme (E1) subuni | 94.98 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 94.95 | |
| cd08266 | 342 | Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam | 94.92 | |
| PRK06728 | 347 | aspartate-semialdehyde dehydrogenase; Provisional | 94.9 | |
| TIGR03693 | 637 | ocin_ThiF_like putative thiazole-containing bacter | 94.89 | |
| TIGR03736 | 244 | PRTRC_ThiF PRTRC system ThiF family protein. A nov | 94.87 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.85 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 94.84 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.79 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 94.75 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 94.74 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 94.72 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.68 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 94.68 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 94.65 | |
| PRK08040 | 336 | putative semialdehyde dehydrogenase; Provisional | 94.63 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.63 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 94.61 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.6 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 94.58 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 94.57 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 94.53 | |
| cd08289 | 326 | MDR_yhfp_like Yhfp putative quinone oxidoreductase | 94.53 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 94.51 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 94.5 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.49 | |
| PF02571 | 249 | CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: | 94.49 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 94.48 | |
| PRK06598 | 369 | aspartate-semialdehyde dehydrogenase; Reviewed | 94.47 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 94.43 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 94.43 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.39 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 94.39 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 94.38 | |
| COG0136 | 334 | Asd Aspartate-semialdehyde dehydrogenase [Amino ac | 94.34 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 94.33 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 94.28 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 94.27 | |
| TIGR01408 | 1008 | Ube1 ubiquitin-activating enzyme E1. This model re | 94.26 | |
| cd08292 | 324 | ETR_like_2 2-enoyl thioester reductase (ETR) like | 94.25 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 94.24 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.24 | |
| cd05288 | 329 | PGDH Prostaglandin dehydrogenases. Prostaglandins | 94.23 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.21 | |
| PF08643 | 299 | DUF1776: Fungal family of unknown function (DUF177 | 94.2 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 94.2 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.18 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.14 |
| >PLN02572 UDP-sulfoquinovose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-57 Score=464.27 Aligned_cols=398 Identities=88% Similarity=1.400 Sum_probs=307.4
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
...++|+||||||+||||++|+++|+++|++|+++|+..+...+.........+.....+.+..+......+++++.+|+
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~~v~~Dl 122 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVDNLCRRLFDHQLGLDSLTPIASIHERVRRWKEVSGKEIELYVGDI 122 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeccccccccccccccccccccchHHHHHHHHHhhCCcceEEECCC
Confidence 35678999999999999999999999999999999875432211000011111111111122222112234689999999
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCC
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDI 241 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~ 241 (479)
+|.+.+.++++..++|+|||+|+.........++.+....+++|+.|+.+++++|++.+++.+||++||..|||....++
T Consensus 123 ~d~~~v~~~l~~~~~D~ViHlAa~~~~~~~~~~~~~~~~~~~~Nv~gt~nlleaa~~~gv~~~~V~~SS~~vYG~~~~~~ 202 (442)
T PLN02572 123 CDFEFLSEAFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAIKEFAPDCHLVKLGTMGEYGTPNIDI 202 (442)
T ss_pred CCHHHHHHHHHhCCCCEEEECCCcccChhhhcChhhHHHHHHHHHHHHHHHHHHHHHhCCCccEEEEecceecCCCCCCC
Confidence 99999999998777999999998765554555554555667899999999999999988754899999999999765455
Q ss_pred cCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 242 EEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
.|..+++++...+++.+.+..|.+.|+.||.++|.+++.+++.+|++++++||++||||++.+....+.++++..+.+.+
T Consensus 203 ~E~~i~~~~~~~e~~~~~~~~P~s~Yg~SK~a~E~l~~~~~~~~gl~~v~lR~~~vyGp~~~~~~~~~~li~~~~~~~~~ 282 (442)
T PLN02572 203 EEGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETMMDEELINRLDYDGVF 282 (442)
T ss_pred cccccccccccccccccCCCCCCCcchhHHHHHHHHHHHHHHhcCCCEEEEecccccCCCCcccccccccccccCcccch
Confidence 66544433333334444566778999999999999999999999999999999999999976654445555555555555
Q ss_pred cchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhhhcCC
Q 011707 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~~~g~ 401 (479)
..++..++.++..|+++.++++|++.|||+||+|++++++.++++....|+..+||++++.+|+.|+++.+.+....+|.
T Consensus 283 ~~~i~~~~~~~~~g~~i~v~g~G~~~Rdfi~V~Dva~a~~~al~~~~~~g~~~i~Nigs~~~si~el~~~i~~~~~~~g~ 362 (442)
T PLN02572 283 GTALNRFCVQAAVGHPLTVYGKGGQTRGFLDIRDTVRCIEIAIANPAKPGEFRVFNQFTEQFSVNELAKLVTKAGEKLGL 362 (442)
T ss_pred hhHHHHHHHHHhcCCCceecCCCCEEECeEEHHHHHHHHHHHHhChhhcCceeEEEeCCCceeHHHHHHHHHHHHHhhCC
Confidence 56788888999999999999999999999999999999999998754344345899988789999999999996333566
Q ss_pred cceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHhcccCCcCCCCCcceecccccCCccccC
Q 011707 402 DVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTVAA 479 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (479)
+.++...+.+........+.+|++|+++|||+|++.++++.+.+.+|+.||+++.+..-+.|.++|++.+++|||++|
T Consensus 363 ~~~~~~~p~~~~~~~~~~~~~d~~k~~~LGw~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (442)
T PLN02572 363 DVEVISVPNPRVEAEEHYYNAKHTKLCELGLEPHLLSDSLLDSLLNFAVKYKDRVDTTLILPAVSWKKIGVKPKTIAA 440 (442)
T ss_pred CCCeeeCCCCcccccccccCccHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHhhcchhhccccccccccccCCcceec
Confidence 666666665444444456678999998899999998888888889999999999999999999999999999999875
|
|
| >COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=372.88 Aligned_cols=310 Identities=28% Similarity=0.353 Sum_probs=264.9
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+||||||+||||+|.+.+|++.|++|+++|+...+.... +.. ..+.++++|+.|.+.
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~G~~vvV~DNL~~g~~~~----------------v~~------~~~~f~~gDi~D~~~ 58 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKTGHEVVVLDNLSNGHKIA----------------LLK------LQFKFYEGDLLDRAL 58 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHCCCeEEEEecCCCCCHHH----------------hhh------ccCceEEeccccHHH
Confidence 5899999999999999999999999999999987753221 110 116899999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGY 245 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~ 245 (479)
+.++|++..+|.|||+||...+.++..+| ..+++.|+.||.+|++++++.|++ +|||.||+.|||.+.. |+.|+
T Consensus 59 L~~vf~~~~idaViHFAa~~~VgESv~~P---l~Yy~NNv~gTl~Ll~am~~~gv~-~~vFSStAavYG~p~~~PI~E~- 133 (329)
T COG1087 59 LTAVFEENKIDAVVHFAASISVGESVQNP---LKYYDNNVVGTLNLIEAMLQTGVK-KFIFSSTAAVYGEPTTSPISET- 133 (329)
T ss_pred HHHHHHhcCCCEEEECccccccchhhhCH---HHHHhhchHhHHHHHHHHHHhCCC-EEEEecchhhcCCCCCcccCCC-
Confidence 99999999999999999999999999887 667899999999999999999998 9999999999999987 88887
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
.|..|.++||.||++.|++++.+++.++++++++|.+|+.|...+.. -...+.|+ +++
T Consensus 134 -------------~~~~p~NPYG~sKlm~E~iL~d~~~a~~~~~v~LRYFN~aGA~~~G~-------iGe~~~~~--thL 191 (329)
T COG1087 134 -------------SPLAPINPYGRSKLMSEEILRDAAKANPFKVVILRYFNVAGACPDGT-------LGQRYPGA--TLL 191 (329)
T ss_pred -------------CCCCCCCcchhHHHHHHHHHHHHHHhCCCcEEEEEecccccCCCCCc-------cCCCCCCc--chH
Confidence 57789999999999999999999999999999999999999865432 12344554 344
Q ss_pred HHHHHHHhcCC--CeEEec------CCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC-CcCHHHHHHHHHHHh
Q 011707 326 NRFCVQAAVGH--PLTVYG------KGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE-QFSVNQLAALVTKAG 396 (479)
Q Consensus 326 ~~~~~~~~~~~--~~~~~~------~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~-~~s~~el~~~i~~~~ 396 (479)
..++.++..|+ .+.++| ||.+.||||||.|+|+|++++++.....|...+||++++ .+|+.|+++.+.++
T Consensus 192 ip~~~q~A~G~r~~l~ifG~DY~T~DGT~iRDYIHV~DLA~aH~~Al~~L~~~g~~~~~NLG~G~G~SV~evi~a~~~v- 270 (329)
T COG1087 192 IPVAAEAALGKRDKLFIFGDDYDTKDGTCIRDYIHVDDLADAHVLALKYLKEGGSNNIFNLGSGNGFSVLEVIEAAKKV- 270 (329)
T ss_pred HHHHHHHHhcCCceeEEeCCCCCCCCCCeeeeeeehhHHHHHHHHHHHHHHhCCceeEEEccCCCceeHHHHHHHHHHH-
Confidence 44455555444 477886 477899999999999999999987665554479999995 69999999999999
Q ss_pred hhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccc-cHHHHHHHHHHHHH
Q 011707 397 EKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHI-LSDSLLDSLLNFAI 450 (479)
Q Consensus 397 ~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~-~~~~~~~~~~~~~~ 450 (479)
.|.+++++..+ ++..+...++.|.+|+++ |||+|++ ++++++++...|..
T Consensus 271 --tg~~ip~~~~~--RR~GDpa~l~Ad~~kA~~~Lgw~p~~~~L~~ii~~aw~W~~ 322 (329)
T COG1087 271 --TGRDIPVEIAP--RRAGDPAILVADSSKARQILGWQPTYDDLEDIIKDAWDWHQ 322 (329)
T ss_pred --hCCcCceeeCC--CCCCCCceeEeCHHHHHHHhCCCcccCCHHHHHHHHHHHhh
Confidence 99999998887 445566677899999987 9999999 99999999999987
|
|
| >COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=365.35 Aligned_cols=314 Identities=24% Similarity=0.350 Sum_probs=267.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEcccCC
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGDICD 163 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d 163 (479)
|++|||||.||||+.+++.++++. .+|+++|...=.. ..+.+..+ ..++..++++|++|
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAg------------------n~~~l~~~~~~~~~~fv~~DI~D 62 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAG------------------NLENLADVEDSPRYRFVQGDICD 62 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccC------------------CHHHHHhhhcCCCceEEeccccC
Confidence 589999999999999999999985 4588888764211 11111222 23589999999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC---C
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI---D 240 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~---~ 240 (479)
.+.+.++++++.+|+|+|+|+-+++..+...|.. ++++|+.||.+||+++++...+.+|+|+||-.|||.... .
T Consensus 63 ~~~v~~~~~~~~~D~VvhfAAESHVDRSI~~P~~---Fi~TNv~GT~~LLEaar~~~~~frf~HISTDEVYG~l~~~~~~ 139 (340)
T COG1088 63 RELVDRLFKEYQPDAVVHFAAESHVDRSIDGPAP---FIQTNVVGTYTLLEAARKYWGKFRFHHISTDEVYGDLGLDDDA 139 (340)
T ss_pred HHHHHHHHHhcCCCeEEEechhccccccccChhh---hhhcchHHHHHHHHHHHHhcccceEEEeccccccccccCCCCC
Confidence 9999999998889999999999999999888754 567899999999999999986559999999999998653 3
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCc
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~ 320 (479)
++|+ .|..|.++|++||+++..+++++.+.+|++++|.|++|-|||++.|.
T Consensus 140 FtE~--------------tp~~PsSPYSASKAasD~lVray~~TYglp~~ItrcSNNYGPyqfpE--------------- 190 (340)
T COG1088 140 FTET--------------TPYNPSSPYSASKAASDLLVRAYVRTYGLPATITRCSNNYGPYQFPE--------------- 190 (340)
T ss_pred cccC--------------CCCCCCCCcchhhhhHHHHHHHHHHHcCCceEEecCCCCcCCCcCch---------------
Confidence 5565 57889999999999999999999999999999999999999999875
Q ss_pred ccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhc
Q 011707 321 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKL 399 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~ 399 (479)
.+|+.++.+++.|++++++|+|.+.|||+||+|-++|+..++.+... |+ +|||++ ...+-.|+++.|.+. +
T Consensus 191 --KlIP~~I~nal~g~~lpvYGdG~~iRDWl~VeDh~~ai~~Vl~kg~~-GE--~YNIgg~~E~~Nlevv~~i~~~---l 262 (340)
T COG1088 191 --KLIPLMIINALLGKPLPVYGDGLQIRDWLYVEDHCRAIDLVLTKGKI-GE--TYNIGGGNERTNLEVVKTICEL---L 262 (340)
T ss_pred --hhhHHHHHHHHcCCCCceecCCcceeeeEEeHhHHHHHHHHHhcCcC-Cc--eEEeCCCccchHHHHHHHHHHH---h
Confidence 35788899999999999999999999999999999999999998655 77 999999 579999999999999 8
Q ss_pred CCcce-----eeecCCCCcccccccccCCchHHH-HcCCcccccHHHHHHHHHHHHHHhcccCCcCC
Q 011707 400 GLDVK-----TISVPNPRVEAEEHYYNAKHTKLI-ELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQ 460 (479)
Q Consensus 400 g~~~~-----~~~~~~~~~~~~~~~~~~d~~k~~-~lG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 460 (479)
|...+ +.++.+.++ -...|.+|.+|++ +|||.|+++++++++.+++||...+.+-....
T Consensus 263 ~~~~~~~~~li~~V~DRpG--HD~RYaid~~Ki~~eLgW~P~~~fe~GlrkTv~WY~~N~~Ww~~l~ 327 (340)
T COG1088 263 GKDKPDYRDLITFVEDRPG--HDRRYAIDASKIKRELGWRPQETFETGLRKTVDWYLDNEWWWEPLK 327 (340)
T ss_pred CccccchhhheEeccCCCC--CccceeechHHHhhhcCCCcCCCHHHHHHHHHHHHHhchHHHhhhh
Confidence 88777 777776543 3445679999985 49999999999999999999987655544333
|
|
| >PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-46 Score=370.64 Aligned_cols=318 Identities=21% Similarity=0.241 Sum_probs=246.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..++|+|||||||||||++|+++|+++|++|+++|+........ +.............++.++.+|++
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~Di~ 79 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDNFSTGYQHN------------LDDVRTSVSEEQWSRFIFIQGDIR 79 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCcchhh------------hhhhhhccccccCCceEEEEccCC
Confidence 34678999999999999999999999999999999854321110 000000000011136889999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CC
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DI 241 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~ 241 (479)
|.+.+.++++ ++|+|||+|+.........++ ...+++|+.|+.+++++|++.+++ +|||+||.+|||.... +.
T Consensus 80 d~~~l~~~~~--~~d~ViHlAa~~~~~~~~~~~---~~~~~~Nv~gt~nll~~~~~~~~~-~~v~~SS~~vyg~~~~~~~ 153 (348)
T PRK15181 80 KFTDCQKACK--NVDYVLHQAALGSVPRSLKDP---IATNSANIDGFLNMLTAARDAHVS-SFTYAASSSTYGDHPDLPK 153 (348)
T ss_pred CHHHHHHHhh--CCCEEEECccccCchhhhhCH---HHHHHHHHHHHHHHHHHHHHcCCC-eEEEeechHhhCCCCCCCC
Confidence 9999999998 799999999976655444444 446789999999999999999987 9999999999996432 33
Q ss_pred cCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 242 EEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
.|+ .+..|.+.|+.+|.++|.+++.+.++++++++++||++||||++++ .|.+
T Consensus 154 ~e~--------------~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~vyGp~~~~-------------~~~~ 206 (348)
T PRK15181 154 IEE--------------RIGRPLSPYAVTKYVNELYADVFARSYEFNAIGLRYFNVFGRRQNP-------------NGAY 206 (348)
T ss_pred CCC--------------CCCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEEEecceeCcCCCC-------------CCcc
Confidence 443 2345678999999999999999988889999999999999998653 2222
Q ss_pred cchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC--CCCCceEEEeCC-CCcCHHHHHHHHHHHhhh
Q 011707 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA--QPGEFRVFNQFT-EQFSVNQLAALVTKAGEK 398 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~ 398 (479)
..+++.++.++..++++.+++++.+.++|+||+|+|++++.++.... ..++ +|||++ +.+|++|+++.+.+.
T Consensus 207 ~~~i~~~~~~~~~~~~i~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~--~yni~~g~~~s~~e~~~~i~~~--- 281 (348)
T PRK15181 207 SAVIPRWILSLLKDEPIYINGDGSTSRDFCYIENVIQANLLSATTNDLASKNK--VYNVAVGDRTSLNELYYLIRDG--- 281 (348)
T ss_pred ccCHHHHHHHHHcCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhcccccCCCC--EEEecCCCcEeHHHHHHHHHHH---
Confidence 34678888888899999999999999999999999999998876532 2344 999998 679999999999987
Q ss_pred cCCc------ceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHh
Q 011707 399 LGLD------VKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 399 ~g~~------~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~ 452 (479)
++.. ..+...+. .......+.+|++|+++ |||+|+++++|+++++++|++..
T Consensus 282 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~k~~~~lGw~P~~sl~egl~~~~~w~~~~ 340 (348)
T PRK15181 282 LNLWRNEQSRAEPIYKDF--RDGDVKHSQADITKIKTFLSYEPEFDIKEGLKQTLKWYIDK 340 (348)
T ss_pred hCcccccccCCCcccCCC--CCCcccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence 4421 11212221 12233346789999987 99999999999999999998764
|
|
| >KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=321.50 Aligned_cols=307 Identities=27% Similarity=0.324 Sum_probs=256.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+.++++|+||||.||||+||+..|..+|++|+++|....+... .++.| ....+++.+.-|+.
T Consensus 24 p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~----------------n~~~~--~~~~~fel~~hdv~ 85 (350)
T KOG1429|consen 24 PSQNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKE----------------NLEHW--IGHPNFELIRHDVV 85 (350)
T ss_pred CCCCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchh----------------hcchh--ccCcceeEEEeech
Confidence 4567999999999999999999999999999999987654322 11112 12357777777876
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CC
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DI 241 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~ 241 (479)
.+ ++. .+|.|||+|+..++.....+| ..++..|+.|+.+++-.|++.+ +||++.||+.|||++.. |.
T Consensus 86 ~p-----l~~--evD~IyhLAapasp~~y~~np---vktIktN~igtln~lglakrv~--aR~l~aSTseVYgdp~~hpq 153 (350)
T KOG1429|consen 86 EP-----LLK--EVDQIYHLAAPASPPHYKYNP---VKTIKTNVIGTLNMLGLAKRVG--ARFLLASTSEVYGDPLVHPQ 153 (350)
T ss_pred hH-----HHH--HhhhhhhhccCCCCcccccCc---cceeeecchhhHHHHHHHHHhC--ceEEEeecccccCCcccCCC
Confidence 54 666 789999999998876666665 5678899999999999999988 59999999999999775 66
Q ss_pred cCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 242 EEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
.|++|-.- .|..+.+.|...|..+|.++..|.++.|+.+.|.|++|.|||.-+-+ +
T Consensus 154 ~e~ywg~v---------npigpr~cydegKr~aE~L~~~y~k~~giE~rIaRifNtyGPrm~~~-------------d-- 209 (350)
T KOG1429|consen 154 VETYWGNV---------NPIGPRSCYDEGKRVAETLCYAYHKQEGIEVRIARIFNTYGPRMHMD-------------D-- 209 (350)
T ss_pred cccccccc---------CcCCchhhhhHHHHHHHHHHHHhhcccCcEEEEEeeecccCCccccC-------------C--
Confidence 66654322 36678999999999999999999999999999999999999986532 1
Q ss_pred cchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcC
Q 011707 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g 400 (479)
++++..|+.+.+++.++.++++|.|+|+|.||.|++++++++++++... -+||++ +.+|+.|+++++.++ .+
T Consensus 210 grvvsnf~~q~lr~epltv~g~G~qtRSF~yvsD~Vegll~Lm~s~~~~----pvNiGnp~e~Tm~elAemv~~~---~~ 282 (350)
T KOG1429|consen 210 GRVVSNFIAQALRGEPLTVYGDGKQTRSFQYVSDLVEGLLRLMESDYRG----PVNIGNPGEFTMLELAEMVKEL---IG 282 (350)
T ss_pred ChhhHHHHHHHhcCCCeEEEcCCcceEEEEeHHHHHHHHHHHhcCCCcC----CcccCCccceeHHHHHHHHHHH---cC
Confidence 5788999999999999999999999999999999999999999987664 499999 889999999999998 66
Q ss_pred CcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHh
Q 011707 401 LDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~ 452 (479)
....+++.... ..+......|++++++ |||.|+++++|++..++.|++.-
T Consensus 283 ~~s~i~~~~~~--~Ddp~kR~pDit~ake~LgW~Pkv~L~egL~~t~~~fr~~ 333 (350)
T KOG1429|consen 283 PVSEIEFVENG--PDDPRKRKPDITKAKEQLGWEPKVSLREGLPLTVTYFRER 333 (350)
T ss_pred CCcceeecCCC--CCCccccCccHHHHHHHhCCCCCCcHHHhhHHHHHHHHHH
Confidence 66666665532 3344455689999998 99999999999999999998863
|
|
| >KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=333.69 Aligned_cols=333 Identities=31% Similarity=0.361 Sum_probs=271.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCC--CceeEEEcccCC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTG--KNIELYIGDICD 163 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~v~~Dl~d 163 (479)
+++||||||+||||+|.+.+|+++|+.|+++|+..+... +.+.+...+.+ .++.++++|++|
T Consensus 2 ~~~VLVtGgaGyiGsht~l~L~~~gy~v~~vDNl~n~~~----------------~sl~r~~~l~~~~~~v~f~~~Dl~D 65 (343)
T KOG1371|consen 2 GKHVLVTGGAGYIGSHTVLALLKRGYGVVIVDNLNNSYL----------------ESLKRVRQLLGEGKSVFFVEGDLND 65 (343)
T ss_pred CcEEEEecCCcceehHHHHHHHhCCCcEEEEecccccch----------------hHHHHHHHhcCCCCceEEEEeccCC
Confidence 579999999999999999999999999999999876431 23333333333 789999999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCc
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIE 242 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~ 242 (479)
.+.++++|+...+|.|+|+|+...++++..+| ..+++.|+.|+.++|+.+++++.+ .+||.||+.|||.+.. |++
T Consensus 66 ~~~L~kvF~~~~fd~V~Hfa~~~~vgeS~~~p---~~Y~~nNi~gtlnlLe~~~~~~~~-~~V~sssatvYG~p~~ip~t 141 (343)
T KOG1371|consen 66 AEALEKLFSEVKFDAVMHFAALAAVGESMENP---LSYYHNNIAGTLNLLEVMKAHNVK-ALVFSSSATVYGLPTKVPIT 141 (343)
T ss_pred HHHHHHHHhhcCCceEEeehhhhccchhhhCc---hhheehhhhhHHHHHHHHHHcCCc-eEEEecceeeecCcceeecc
Confidence 99999999999999999999999999999887 667899999999999999999966 9999999999999886 777
Q ss_pred CCceeecCCCCCCCCCCCCC-CCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeec--CCCCchhhhHhhhcccCCCC
Q 011707 243 EGYITINHNGRTDTLPYPKQ-ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYG--VRTDETAMHEELCNRLDYDG 319 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~G--p~~~~~~~~~~~~~~~~~~g 319 (479)
|+ .+.. |.+.|+.+|.+.|+++..+...++..++.+|.++++| |+....+.+...-|...| .
T Consensus 142 e~--------------~~t~~p~~pyg~tK~~iE~i~~d~~~~~~~~~~~LRyfn~~ga~p~Gr~ge~p~~~~nnl~p-~ 206 (343)
T KOG1371|consen 142 EE--------------DPTDQPTNPYGKTKKAIEEIIHDYNKAYGWKVTGLRYFNVIGAHPSGRIGEAPLGIPNNLLP-Y 206 (343)
T ss_pred Cc--------------CCCCCCCCcchhhhHHHHHHHHhhhccccceEEEEEeccccCccccCccCCCCccCcccccc-c
Confidence 76 2434 7899999999999999999988899999999999999 766655443333333332 3
Q ss_pred cccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC-CcCHHHHHHHHHHHhhh
Q 011707 320 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE-QFSVNQLAALVTKAGEK 398 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~-~~s~~el~~~i~~~~~~ 398 (479)
+++..+.++-....-|.+... .+|.++++++|+-|+|..++.++.+.....+.++||++++ ..++.|++..++++
T Consensus 207 v~~vaigr~~~l~v~g~d~~t-~dgt~vrdyi~v~Dla~~h~~al~k~~~~~~~~i~Nlgtg~g~~V~~lv~a~~k~--- 282 (343)
T KOG1371|consen 207 VFQVAIGRRPNLQVVGRDYTT-IDGTIVRDYIHVLDLADGHVAALGKLRGAAEFGVYNLGTGKGSSVLELVTAFEKA--- 282 (343)
T ss_pred ccchhhcccccceeecCcccc-cCCCeeecceeeEehHHHHHHHhhccccchheeeEeecCCCCccHHHHHHHHHHH---
Confidence 333333333333333444433 3568999999999999999999999877667779999994 68899999999998
Q ss_pred cCCcceeeecCCCCcccccccccCCchHHH-HcCCcccccHHHHHHHHHHHHHHhcccCCcC
Q 011707 399 LGLDVKTISVPNPRVEAEEHYYNAKHTKLI-ELGLQPHILSDSLLDSLLNFAIQFKDRVDSK 459 (479)
Q Consensus 399 ~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~-~lG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (479)
+|.++++..++. + ..+...+..+++++. +|||+|++.++++++++..|...++..++.+
T Consensus 283 ~g~~~k~~~v~~-R-~gdv~~~ya~~~~a~~elgwk~~~~iee~c~dlw~W~~~np~gy~~~ 342 (343)
T KOG1371|consen 283 LGVKIKKKVVPR-R-NGDVAFVYANPSKAQRELGWKAKYGLQEMLKDLWRWQKQNPSGYDTK 342 (343)
T ss_pred hcCCCCccccCC-C-CCCceeeeeChHHHHHHhCCccccCHHHHHHHHHHHHhcCCCcCCCC
Confidence 999999998887 3 333444456777774 5999999999999999999999999887754
|
|
| >PLN02166 dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=349.37 Aligned_cols=305 Identities=24% Similarity=0.270 Sum_probs=239.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.+.|+|||||||||||++|+++|+++|++|+++|+...+... ..... ....+++++.+|+.+
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~----------------~~~~~--~~~~~~~~~~~Di~~ 179 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKE----------------NLVHL--FGNPRFELIRHDVVE 179 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCCCccHh----------------Hhhhh--ccCCceEEEECcccc
Confidence 456899999999999999999999999999999975332110 00000 012367888899876
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCc
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIE 242 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~ 242 (479)
.. +. ++|+|||+|+.........++ ...+++|+.|+.+++++|++.+ ++|||+||.+|||.... +..
T Consensus 180 ~~-----~~--~~D~ViHlAa~~~~~~~~~~p---~~~~~~Nv~gT~nLleaa~~~g--~r~V~~SS~~VYg~~~~~p~~ 247 (436)
T PLN02166 180 PI-----LL--EVDQIYHLACPASPVHYKYNP---VKTIKTNVMGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLEHPQK 247 (436)
T ss_pred cc-----cc--CCCEEEECceeccchhhccCH---HHHHHHHHHHHHHHHHHHHHhC--CEEEEECcHHHhCCCCCCCCC
Confidence 43 34 799999999975543333333 4567899999999999999987 38999999999997643 455
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|+.+.. ..|..+.+.|+.+|..+|++++.+++.++++++++||++||||++.... +
T Consensus 248 E~~~~~---------~~p~~p~s~Yg~SK~~aE~~~~~y~~~~~l~~~ilR~~~vYGp~~~~~~---------------~ 303 (436)
T PLN02166 248 ETYWGN---------VNPIGERSCYDEGKRTAETLAMDYHRGAGVEVRIARIFNTYGPRMCLDD---------------G 303 (436)
T ss_pred cccccc---------CCCCCCCCchHHHHHHHHHHHHHHHHHhCCCeEEEEEccccCCCCCCCc---------------c
Confidence 542211 1244567889999999999999999888999999999999999853210 2
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCC
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~ 401 (479)
.++..++.+++.++++.+++++++.++|+||+|++++++.+++... ++ +|||++ +.+|+.|+++.|.+. +|.
T Consensus 304 ~~i~~~i~~~l~~~~i~v~g~g~~~rdfi~V~Dva~ai~~~~~~~~--~g--iyNIgs~~~~Si~ela~~I~~~---~g~ 376 (436)
T PLN02166 304 RVVSNFVAQTIRKQPMTVYGDGKQTRSFQYVSDLVDGLVALMEGEH--VG--PFNLGNPGEFTMLELAEVVKET---IDS 376 (436)
T ss_pred chHHHHHHHHhcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhcCC--Cc--eEEeCCCCcEeHHHHHHHHHHH---hCC
Confidence 4567888899999999999999999999999999999999997542 33 899998 679999999999998 777
Q ss_pred cceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHH
Q 011707 402 DVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
+..+...+... .....+.+|++|+++ |||+|+++++++++++++|++.
T Consensus 377 ~~~i~~~p~~~--~~~~~~~~d~~Ka~~~LGw~P~~sl~egl~~~i~~~~~ 425 (436)
T PLN02166 377 SATIEFKPNTA--DDPHKRKPDISKAKELLNWEPKISLREGLPLMVSDFRN 425 (436)
T ss_pred CCCeeeCCCCC--CCccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHH
Confidence 76666655432 223455789999988 9999999999999999999865
|
|
| >TIGR01472 gmd GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=340.07 Aligned_cols=315 Identities=20% Similarity=0.180 Sum_probs=237.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+||||||+||||++|+++|+++|++|++++|........ .+....+........+++++.+|++|.+.
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 69 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGYEVHGLIRRSSSFNTQ-----------RIEHIYEDPHNVNKARMKLHYGDLTDSSN 69 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCCEEEEEecCCcccchh-----------hhhhhhhccccccccceeEEEeccCCHHH
Confidence 5899999999999999999999999999999864311000 00000000001112468899999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCc--ceEEEeeccccccCCCC-CCcC
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQE--CHLVKLGTMGEYGTPNI-DIEE 243 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~--~~~V~~SS~~v~g~~~~-~~~e 243 (479)
+.++++..++|+|||+|+.........++ ...+++|+.|+.+++++|++.+.+ .+|||+||.++||.... +..|
T Consensus 70 l~~~~~~~~~d~ViH~Aa~~~~~~~~~~~---~~~~~~n~~gt~~ll~a~~~~~~~~~~~~v~~SS~~vyg~~~~~~~~E 146 (343)
T TIGR01472 70 LRRIIDEIKPTEIYNLAAQSHVKVSFEIP---EYTADVDGIGTLRLLEAVRTLGLIKSVKFYQASTSELYGKVQEIPQNE 146 (343)
T ss_pred HHHHHHhCCCCEEEECCcccccchhhhCh---HHHHHHHHHHHHHHHHHHHHhCCCcCeeEEEeccHHhhCCCCCCCCCC
Confidence 99999976789999999976544333332 445688999999999999988753 38999999999997543 4444
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
+ .+..|.+.|+.||.++|.+++.+++++|+++++.|+.++|||+.... ....
T Consensus 147 ~--------------~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~--------------~~~~ 198 (343)
T TIGR01472 147 T--------------TPFYPRSPYAAAKLYAHWITVNYREAYGLFAVNGILFNHESPRRGEN--------------FVTR 198 (343)
T ss_pred C--------------CCCCCCChhHHHHHHHHHHHHHHHHHhCCceEEEeecccCCCCCCcc--------------ccch
Confidence 4 24567889999999999999999998999999999999999974211 1123
Q ss_pred hHHHHHHHHhcCCC-eEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCC
Q 011707 324 ALNRFCVQAAVGHP-LTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 324 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~ 401 (479)
.+..++.++..+++ ..+++++++.++|+||+|+|++++.+++++. ++ +|||++ +++|+.|+++.+.+. +|.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~V~D~a~a~~~~~~~~~--~~--~yni~~g~~~s~~e~~~~i~~~---~g~ 271 (343)
T TIGR01472 199 KITRAAAKIKLGLQEKLYLGNLDAKRDWGHAKDYVEAMWLMLQQDK--PD--DYVIATGETHSVREFVEVSFEY---IGK 271 (343)
T ss_pred HHHHHHHHHHcCCCCceeeCCCccccCceeHHHHHHHHHHHHhcCC--Cc--cEEecCCCceeHHHHHHHHHHH---cCC
Confidence 45566677777764 4566888999999999999999999998653 23 899998 679999999999998 665
Q ss_pred ccee-------------------eecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHH
Q 011707 402 DVKT-------------------ISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAI 450 (479)
Q Consensus 402 ~~~~-------------------~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~ 450 (479)
+..+ ...+..........+.+|++|+++ |||+|+++++|+++++++|++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~egi~~~~~~~~ 340 (343)
T TIGR01472 272 TLNWKDKGINEVGRCKETGKVHVEIDPRYFRPTEVDLLLGDATKAKEKLGWKPEVSFEKLVKEMVEEDL 340 (343)
T ss_pred CcccccccccccccccccCceeEEeCccccCCCccchhcCCHHHHHHhhCCCCCCCHHHHHHHHHHHHH
Confidence 4321 111111122334455689999987 999999999999999999876
|
Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116). |
| >TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=339.46 Aligned_cols=320 Identities=19% Similarity=0.166 Sum_probs=244.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+||||+++++.|+++|++|++++|....... ...... ...++.++.+|++|
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~~----------------~~~~~~--~~~~~~~~~~Dl~~ 63 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDPPTSPN----------------LFELLN--LAKKIEDHFGDIRD 63 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCCccchh----------------HHHHHh--hcCCceEEEccCCC
Confidence 357899999999999999999999999999999875432100 000110 12357788999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccCCCC--C
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGTPNI--D 240 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~~~~--~ 240 (479)
.+++.++++..++|+|||+||......... ++...+++|+.|+.+++++|++.+ .+ +||++||..+||.... +
T Consensus 64 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~~---~~~~~~~~N~~g~~~ll~a~~~~~~~~-~iv~~SS~~vyg~~~~~~~ 139 (349)
T TIGR02622 64 AAKLRKAIAEFKPEIVFHLAAQPLVRKSYA---DPLETFETNVMGTVNLLEAIRAIGSVK-AVVNVTSDKCYRNDEWVWG 139 (349)
T ss_pred HHHHHHHHhhcCCCEEEECCcccccccchh---CHHHHHHHhHHHHHHHHHHHHhcCCCC-EEEEEechhhhCCCCCCCC
Confidence 999999998767899999999654333333 345678999999999999998876 55 9999999999986532 3
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-------CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-------GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-------gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
+.|+ .+..|.+.|+.+|.++|.+++.+++++ +++++++||++||||++...
T Consensus 140 ~~e~--------------~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~i~~~~lR~~~vyGp~~~~~-------- 197 (349)
T TIGR02622 140 YRET--------------DPLGGHDPYSSSKACAELVIASYRSSFFGVANFHGIKIASARAGNVIGGGDWAE-------- 197 (349)
T ss_pred CccC--------------CCCCCCCcchhHHHHHHHHHHHHHHHhhcccccCCCcEEEEccCcccCCCcchh--------
Confidence 3343 244567899999999999999988765 89999999999999975321
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC----CCCCCceEEEeCC---CCcCHH
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP----AQPGEFRVFNQFT---EQFSVN 386 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~----~~~g~~~~~ni~~---~~~s~~ 386 (479)
..++..++..+..|+++.+ +++++.++|+|++|+|++++.++++. ...++ +|||++ +++++.
T Consensus 198 --------~~~~~~~~~~~~~g~~~~~-~~g~~~rd~i~v~D~a~a~~~~~~~~~~~~~~~~~--~yni~s~~~~~~s~~ 266 (349)
T TIGR02622 198 --------DRLIPDVIRAFSSNKIVII-RNPDATRPWQHVLEPLSGYLLLAEKLFTGQAEFAG--AWNFGPRASDNARVV 266 (349)
T ss_pred --------hhhhHHHHHHHhcCCCeEE-CCCCcccceeeHHHHHHHHHHHHHHHhhcCccccc--eeeeCCCcccCcCHH
Confidence 2356778888888888765 56789999999999999999988752 11233 999996 369999
Q ss_pred HHHHHHHHHhhhcC-CcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcccCCcCCC
Q 011707 387 QLAALVTKAGEKLG-LDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDRVDSKQI 461 (479)
Q Consensus 387 el~~~i~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (479)
|+++.+.+. ++ .++.+...+.+..........+|++|+++ |||+|+++++++++++++|++.+....++.+.
T Consensus 267 ~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~~gi~~~i~w~~~~~~~~~~~~~ 340 (349)
T TIGR02622 267 ELVVDALEF---WWGDDAEWEDDSDLNHPHEARLLKLDSSKARTLLGWHPRWGLEEAVSRTVDWYKAWLRGEDMLQL 340 (349)
T ss_pred HHHHHHHHH---hcCCCCceeeccCCCCCcccceeecCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhcCCChHHh
Confidence 999999886 33 33444332222222233445689999987 99999999999999999999998877766543
|
Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose. |
| >PLN02653 GDP-mannose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=336.98 Aligned_cols=317 Identities=21% Similarity=0.199 Sum_probs=241.1
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|+||||||+||||++|+++|+++|++|+++++........ .+ +.+.......+.++.++.+|++|.
T Consensus 5 ~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~r~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~Dl~d~ 72 (340)
T PLN02653 5 PRKVALITGITGQDGSYLTEFLLSKGYEVHGIIRRSSNFNTQ-----RL-------DHIYIDPHPNKARMKLHYGDLSDA 72 (340)
T ss_pred CCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeccccccccc-----ch-------hhhccccccccCceEEEEecCCCH
Confidence 578999999999999999999999999999998754311000 00 000000001124688999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCc----ceEEEeeccccccCCCCC
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQE----CHLVKLGTMGEYGTPNID 240 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~----~~~V~~SS~~v~g~~~~~ 240 (479)
+.+.++++..++|+|||+||.........+ ....+++|+.|+.+++++|++.+.. .+||++||.++||....+
T Consensus 73 ~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~---~~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~v~~Ss~~vyg~~~~~ 149 (340)
T PLN02653 73 SSLRRWLDDIKPDEVYNLAAQSHVAVSFEM---PDYTADVVATGALRLLEAVRLHGQETGRQIKYYQAGSSEMYGSTPPP 149 (340)
T ss_pred HHHHHHHHHcCCCEEEECCcccchhhhhhC---hhHHHHHHHHHHHHHHHHHHHhccccccceeEEEeccHHHhCCCCCC
Confidence 999999987678999999997654333333 2456789999999999999988753 389999999999976545
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCc
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~ 320 (479)
+.|+ .+..|.+.|+.||.++|.+++.++++++++++..|+.++|||+.... .
T Consensus 150 ~~E~--------------~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~~~~~gp~~~~~--------------~ 201 (340)
T PLN02653 150 QSET--------------TPFHPRSPYAVAKVAAHWYTVNYREAYGLFACNGILFNHESPRRGEN--------------F 201 (340)
T ss_pred CCCC--------------CCCCCCChhHHHHHHHHHHHHHHHHHcCCeEEEeeeccccCCCCCcc--------------c
Confidence 5554 35567889999999999999999999999999999999999974321 1
Q ss_pred ccchHHHHHHHHhcCCCeEE-ecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhh
Q 011707 321 FGTALNRFCVQAAVGHPLTV-YGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEK 398 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~ 398 (479)
+...+..++.++..++++.+ .+++++.++|+||+|+|++++.++++.. ++ +|||++ +++|+.|+++.+.+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~a~a~~~~~~~~~--~~--~yni~~g~~~s~~e~~~~i~~~--- 274 (340)
T PLN02653 202 VTRKITRAVGRIKVGLQKKLFLGNLDASRDWGFAGDYVEAMWLMLQQEK--PD--DYVVATEESHTVEEFLEEAFGY--- 274 (340)
T ss_pred chhHHHHHHHHHHcCCCCceEeCCCcceecceeHHHHHHHHHHHHhcCC--CC--cEEecCCCceeHHHHHHHHHHH---
Confidence 12345566667777776554 4888999999999999999999998743 33 899998 679999999999998
Q ss_pred cCCc--ceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHH
Q 011707 399 LGLD--VKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 399 ~g~~--~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
+|.+ ..+...+..........+.+|++|+++ |||+|+++++|+++++++|++.
T Consensus 275 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~p~~~l~~gi~~~~~~~~~ 330 (340)
T PLN02653 275 VGLNWKDHVEIDPRYFRPAEVDNLKGDASKAREVLGWKPKVGFEQLVKMMVDEDLE 330 (340)
T ss_pred cCCCCCcceeeCcccCCccccccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 7753 222222222122333455689999987 9999999999999999998764
|
|
| >PRK10217 dTDP-glucose 4,6-dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=339.34 Aligned_cols=309 Identities=21% Similarity=0.282 Sum_probs=236.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEE-EEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVA-IVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~-~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
+|+|||||||||||++|++.|+++|++|+ ++++..... . . ...... ....++.++.+|++|.
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~~~~~~-~-------~-------~~~~~~--~~~~~~~~~~~Dl~d~ 63 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINETSDAVVVVDKLTYAG-N-------L-------MSLAPV--AQSERFAFEKVDICDR 63 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEecCcccc-c-------h-------hhhhhc--ccCCceEEEECCCcCh
Confidence 46899999999999999999999998755 444422100 0 0 000000 0123678899999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc---------CCcceEEEeecccccc
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF---------RQECHLVKLGTMGEYG 235 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---------g~~~~~V~~SS~~v~g 235 (479)
++++++++..++|+|||+||......... ++..++++|+.|+.+++++|.+. +++ +||++||.++||
T Consensus 64 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~---~~~~~~~~N~~gt~~ll~a~~~~~~~~~~~~~~~~-~~i~~SS~~vyg 139 (355)
T PRK10217 64 AELARVFTEHQPDCVMHLAAESHVDRSID---GPAAFIETNIVGTYTLLEAARAYWNALTEDKKSAF-RFHHISTDEVYG 139 (355)
T ss_pred HHHHHHHhhcCCCEEEECCcccCcchhhh---ChHHHHHHhhHHHHHHHHHHHHhhhcccccccCce-EEEEecchhhcC
Confidence 99999998667999999999765432322 23567899999999999999863 344 999999999998
Q ss_pred CCC---CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPN---IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~---~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
... .+++|+ .+..|.+.|+.||.++|.+++.++++++++++++||++||||++.+
T Consensus 140 ~~~~~~~~~~E~--------------~~~~p~s~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~-------- 197 (355)
T PRK10217 140 DLHSTDDFFTET--------------TPYAPSSPYSASKASSDHLVRAWLRTYGLPTLITNCSNNYGPYHFP-------- 197 (355)
T ss_pred CCCCCCCCcCCC--------------CCCCCCChhHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCc--------
Confidence 642 234454 2445678999999999999999998899999999999999998643
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHH
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAAL 391 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~ 391 (479)
..++..++.....++++.+++++++.++|+||+|+++++..+++... .++ +|||++ +.+|+.|+++.
T Consensus 198 ---------~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~D~a~a~~~~~~~~~-~~~--~yni~~~~~~s~~~~~~~ 265 (355)
T PRK10217 198 ---------EKLIPLMILNALAGKPLPVYGNGQQIRDWLYVEDHARALYCVATTGK-VGE--TYNIGGHNERKNLDVVET 265 (355)
T ss_pred ---------ccHHHHHHHHHhcCCCceEeCCCCeeeCcCcHHHHHHHHHHHHhcCC-CCC--eEEeCCCCcccHHHHHHH
Confidence 23466777888888888899999999999999999999999998743 344 999999 57999999999
Q ss_pred HHHHhhhcCCcce------------eeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 392 VTKAGEKLGLDVK------------TISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 392 i~~~~~~~g~~~~------------~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
+.+. ++...+ +...+. .......+.+|++|+++ |||+|+++++|+++++++|++...+
T Consensus 266 i~~~---~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~k~~~~lg~~p~~~l~e~l~~~~~~~~~~~~ 336 (355)
T PRK10217 266 ICEL---LEELAPNKPQGVAHYRDLITFVAD--RPGHDLRYAIDASKIARELGWLPQETFESGMRKTVQWYLANES 336 (355)
T ss_pred HHHH---hcccccccccccccccccceecCC--CCCCCcccccCHHHHHHhcCCCCcCcHHHHHHHHHHHHHhCHH
Confidence 9997 443211 111111 11123345789999977 9999999999999999999877543
|
|
| >PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=337.46 Aligned_cols=318 Identities=17% Similarity=0.182 Sum_probs=237.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC-C
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC-D 163 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~-d 163 (479)
+|+|||||||||||++|+++|++. |++|++++|..... ..+ ....+++++.+|++ +
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~--------------------~~~--~~~~~~~~~~~Dl~~~ 58 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRL--------------------GDL--VNHPRMHFFEGDITIN 58 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHH--------------------HHh--ccCCCeEEEeCCCCCC
Confidence 468999999999999999999987 79999998743210 000 01146889999998 6
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCc
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIE 242 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~ 242 (479)
.+.+.++++ ++|+|||+|+.........+| ...+++|+.|+.+++++|++.+ + +|||+||..+||.... ++.
T Consensus 59 ~~~~~~~~~--~~d~ViH~aa~~~~~~~~~~p---~~~~~~n~~~~~~ll~aa~~~~-~-~~v~~SS~~vyg~~~~~~~~ 131 (347)
T PRK11908 59 KEWIEYHVK--KCDVILPLVAIATPATYVKQP---LRVFELDFEANLPIVRSAVKYG-K-HLVFPSTSEVYGMCPDEEFD 131 (347)
T ss_pred HHHHHHHHc--CCCEEEECcccCChHHhhcCc---HHHHHHHHHHHHHHHHHHHhcC-C-eEEEEecceeeccCCCcCcC
Confidence 778888888 799999999975543333343 4567899999999999999887 5 9999999999986533 344
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|+..+... .....|.+.|+.+|.++|++++.+++.++++++++||+++|||+..+.. .+..-..
T Consensus 132 ee~~~~~~-------~~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~v~Gp~~~~~~---------~~~~~~~ 195 (347)
T PRK11908 132 PEASPLVY-------GPINKPRWIYACSKQLMDRVIWAYGMEEGLNFTLFRPFNWIGPGLDSIY---------TPKEGSS 195 (347)
T ss_pred cccccccc-------CcCCCccchHHHHHHHHHHHHHHHHHHcCCCeEEEeeeeeeCCCccCCC---------ccccCCc
Confidence 43211110 0012456789999999999999999889999999999999999864310 0000013
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC--CCCCceEEEeCC-C-CcCHHHHHHHHHHHhhh
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA--QPGEFRVFNQFT-E-QFSVNQLAALVTKAGEK 398 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~g~~~~~ni~~-~-~~s~~el~~~i~~~~~~ 398 (479)
.++..++..+..++++.+++++++.++|+|++|++++++.+++++. ..++ +|||++ + .+|+.|+++.|.+.
T Consensus 196 ~~i~~~~~~~~~~~~~~~~~~g~~~r~~i~v~D~a~a~~~~~~~~~~~~~g~--~yni~~~~~~~s~~e~~~~i~~~--- 270 (347)
T PRK11908 196 RVVTQFLGHIVRGEPISLVDGGSQKRAFTDIDDGIDALMKIIENKDGVASGK--IYNIGNPKNNHSVRELANKMLEL--- 270 (347)
T ss_pred chHHHHHHHHhCCCceEEecCCceeeccccHHHHHHHHHHHHhCccccCCCC--eEEeCCCCCCcCHHHHHHHHHHH---
Confidence 4577888888899998888888999999999999999999998753 3344 999998 4 59999999999998
Q ss_pred cCCccee---------eecCCC--C--cccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhc
Q 011707 399 LGLDVKT---------ISVPNP--R--VEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFK 453 (479)
Q Consensus 399 ~g~~~~~---------~~~~~~--~--~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~ 453 (479)
+|..+.+ ...+.. . .......+..|++|+++ |||+|+++++++++++++|++...
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~~l~~~~~~~~~~~ 339 (347)
T PRK11908 271 AAEYPEYAESAKKVKLVETTSGAYYGKGYQDVQNRVPKIDNTMQELGWAPKTTMDDALRRIFEAYRGHV 339 (347)
T ss_pred hcCcccccccccccccccCCchhccCcCcchhccccCChHHHHHHcCCCCCCcHHHHHHHHHHHHHHHH
Confidence 5543222 111110 0 11122345578899987 999999999999999999987543
|
|
| >KOG0747 consensus Putative NAD+-dependent epimerases [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=312.60 Aligned_cols=310 Identities=24% Similarity=0.290 Sum_probs=253.1
Q ss_pred cEEEEEcCCchhhHHHHHHHHhC--CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNK--GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
+++|||||.||||++.+..+... .++.+.+|...=... +.. ++... ...+..++.+|+.+.
T Consensus 7 ~~vlItgg~gfi~Sn~~~~~~~~~p~~~~v~idkL~~~s~-----~~~----------l~~~~--n~p~ykfv~~di~~~ 69 (331)
T KOG0747|consen 7 KNVLITGGAGFIGSNFINYLVDKYPDYKFVNLDKLDYCSN-----LKN----------LEPVR--NSPNYKFVEGDIADA 69 (331)
T ss_pred ceEEEecCcCcchhhhhhhcccCCCCCcEEEEeecccccc-----cch----------hhhhc--cCCCceEeeccccch
Confidence 79999999999999999999987 578888876532111 110 11111 126899999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCc--
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIE-- 242 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~-- 242 (479)
..+.-++....+|.|+|+|+..++..++.++ ......|+.++..++++++..|.-.+|||+||..|||...+...
T Consensus 70 ~~~~~~~~~~~id~vihfaa~t~vd~s~~~~---~~~~~nnil~t~~Lle~~~~sg~i~~fvhvSTdeVYGds~~~~~~~ 146 (331)
T KOG0747|consen 70 DLVLYLFETEEIDTVIHFAAQTHVDRSFGDS---FEFTKNNILSTHVLLEAVRVSGNIRRFVHVSTDEVYGDSDEDAVVG 146 (331)
T ss_pred HHHHhhhccCchhhhhhhHhhhhhhhhcCch---HHHhcCCchhhhhHHHHHHhccCeeEEEEecccceecCcccccccc
Confidence 9999998877899999999999988888776 44567899999999999999864449999999999999875322
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|. ..+.|.++|+++|+++|.++++|.+.+|++++++|.++||||++.+.
T Consensus 147 E~--------------s~~nPtnpyAasKaAaE~~v~Sy~~sy~lpvv~~R~nnVYGP~q~~~----------------- 195 (331)
T KOG0747|consen 147 EA--------------SLLNPTNPYAASKAAAEMLVRSYGRSYGLPVVTTRMNNVYGPNQYPE----------------- 195 (331)
T ss_pred cc--------------ccCCCCCchHHHHHHHHHHHHHHhhccCCcEEEEeccCccCCCcChH-----------------
Confidence 32 46678999999999999999999999999999999999999998764
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhh-cC
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEK-LG 400 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~-~g 400 (479)
..++.|+.....+++.++.|+|.+.++|+||+|+++++..++++ ...|+ ||||++ .+.+..|+++.+.+.+.+ ++
T Consensus 196 klipkFi~l~~~~~~~~i~g~g~~~rs~l~veD~~ea~~~v~~K-g~~ge--IYNIgtd~e~~~~~l~k~i~eli~~~~~ 272 (331)
T KOG0747|consen 196 KLIPKFIKLAMRGKEYPIHGDGLQTRSYLYVEDVSEAFKAVLEK-GELGE--IYNIGTDDEMRVIDLAKDICELFEKRLP 272 (331)
T ss_pred HHhHHHHHHHHhCCCcceecCcccceeeEeHHHHHHHHHHHHhc-CCccc--eeeccCcchhhHHHHHHHHHHHHHHhcc
Confidence 35788888888999999999999999999999999999999998 55677 999999 689999999999887222 22
Q ss_pred ---CcceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHh
Q 011707 401 ---LDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 401 ---~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~ 452 (479)
.+..+.++++ .+.....|.+|.+|+|.|||+|+++++++++.+++|+...
T Consensus 273 ~~~~~p~~~~v~d--Rp~nd~Ry~~~~eKik~LGw~~~~p~~eGLrktie~y~~~ 325 (331)
T KOG0747|consen 273 NIDTEPFIFFVED--RPYNDLRYFLDDEKIKKLGWRPTTPWEEGLRKTIEWYTKN 325 (331)
T ss_pred CCCCCCcceecCC--CCcccccccccHHHHHhcCCcccCcHHHHHHHHHHHHHhh
Confidence 1222233332 2334445779999999999999999999999999998653
|
|
| >PLN02206 UDP-glucuronate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=345.60 Aligned_cols=305 Identities=25% Similarity=0.280 Sum_probs=237.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++|+|||||||||||++|+++|+++|++|+++++...+... ... ......+++++.+|+.+
T Consensus 117 ~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~----------------~~~--~~~~~~~~~~i~~D~~~ 178 (442)
T PLN02206 117 RKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVDNFFTGRKE----------------NVM--HHFSNPNFELIRHDVVE 178 (442)
T ss_pred cCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEeCCCccchh----------------hhh--hhccCCceEEEECCccC
Confidence 467899999999999999999999999999999874321100 000 01112467888999877
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCc
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIE 242 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~ 242 (479)
.. +. ++|+|||+|+.........++ ...+++|+.|+.+++++|++.+ ++|||+||..|||.... +..
T Consensus 179 ~~-----l~--~~D~ViHlAa~~~~~~~~~~p---~~~~~~Nv~gt~nLleaa~~~g--~r~V~~SS~~VYg~~~~~p~~ 246 (442)
T PLN02206 179 PI-----LL--EVDQIYHLACPASPVHYKFNP---VKTIKTNVVGTLNMLGLAKRVG--ARFLLTSTSEVYGDPLQHPQV 246 (442)
T ss_pred hh-----hc--CCCEEEEeeeecchhhhhcCH---HHHHHHHHHHHHHHHHHHHHhC--CEEEEECChHHhCCCCCCCCC
Confidence 53 34 799999999975533322233 4567899999999999999988 38999999999987543 445
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|+.+.. ..|..+.+.|+.+|.++|+++..+.+.++++++++||+++|||+..... +
T Consensus 247 E~~~~~---------~~P~~~~s~Y~~SK~~aE~~~~~y~~~~g~~~~ilR~~~vyGp~~~~~~---------------~ 302 (442)
T PLN02206 247 ETYWGN---------VNPIGVRSCYDEGKRTAETLTMDYHRGANVEVRIARIFNTYGPRMCIDD---------------G 302 (442)
T ss_pred cccccc---------CCCCCccchHHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCccc---------------c
Confidence 542210 1244457899999999999999998888999999999999999753210 2
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCC
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~ 401 (479)
.++..++.+++.++++.+++++++.++|+||+|+|++++.++++.. +. +|||++ +.+|+.|+++.+.+. +|.
T Consensus 303 ~~v~~~i~~~l~~~~i~i~g~G~~~rdfi~V~Dva~ai~~a~e~~~--~g--~yNIgs~~~~sl~Elae~i~~~---~g~ 375 (442)
T PLN02206 303 RVVSNFVAQALRKEPLTVYGDGKQTRSFQFVSDLVEGLMRLMEGEH--VG--PFNLGNPGEFTMLELAKVVQET---IDP 375 (442)
T ss_pred chHHHHHHHHHcCCCcEEeCCCCEEEeEEeHHHHHHHHHHHHhcCC--Cc--eEEEcCCCceeHHHHHHHHHHH---hCC
Confidence 3567788888899999999999999999999999999999998642 33 899998 679999999999998 776
Q ss_pred cceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHH
Q 011707 402 DVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
+..+.+.+.... ......+|++|+++ |||+|+++++|+++++++|++.
T Consensus 376 ~~~i~~~p~~~~--~~~~~~~d~sKa~~~LGw~P~~~l~egl~~~~~~~~~ 424 (442)
T PLN02206 376 NAKIEFRPNTED--DPHKRKPDITKAKELLGWEPKVSLRQGLPLMVKDFRQ 424 (442)
T ss_pred CCceeeCCCCCC--CccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHH
Confidence 666665554322 23345689999987 9999999999999999999865
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=340.71 Aligned_cols=343 Identities=20% Similarity=0.194 Sum_probs=241.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+.+.|+|||||||||||++|+++|+++ |++|+++++....... + ..........+++++.+|+
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~-------l---------~~~~~~~~~~~~~~~~~Dl 74 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKH-------L---------LEPDTVPWSGRIQFHRINI 74 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEecCchhhhh-------h---------hccccccCCCCeEEEEcCC
Confidence 456689999999999999999999998 5999999875321100 0 0000000114689999999
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-C
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-D 240 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~ 240 (479)
+|.+.+.++++ ++|+|||+|+.........++ ...+..|+.|+.+++++|++.+ + +|||+||.++||.... +
T Consensus 75 ~d~~~l~~~~~--~~d~ViHlAa~~~~~~~~~~~---~~~~~~n~~gt~~ll~aa~~~~-~-r~v~~SS~~vYg~~~~~~ 147 (386)
T PLN02427 75 KHDSRLEGLIK--MADLTINLAAICTPADYNTRP---LDTIYSNFIDALPVVKYCSENN-K-RLIHFSTCEVYGKTIGSF 147 (386)
T ss_pred CChHHHHHHhh--cCCEEEEcccccChhhhhhCh---HHHHHHHHHHHHHHHHHHHhcC-C-EEEEEeeeeeeCCCcCCC
Confidence 99999999998 799999999975533222232 2345689999999999999877 5 9999999999997532 2
Q ss_pred CcCCceeecCC----C-CCCCCCC----CCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhh
Q 011707 241 IEEGYITINHN----G-RTDTLPY----PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 241 ~~e~~~~~~~~----~-~~~~~~~----~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
..|+. +.... . .++..+. ...+.+.|+.+|.++|++++.+++.+|++++++||++||||+.+... ..
T Consensus 148 ~~e~~-p~~~~~~~~~~~e~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~---~~ 223 (386)
T PLN02427 148 LPKDH-PLRQDPAFYVLKEDESPCIFGSIEKQRWSYACAKQLIERLIYAEGAENGLEFTIVRPFNWIGPRMDFIP---GI 223 (386)
T ss_pred CCccc-ccccccccccccccccccccCCCCccccchHHHHHHHHHHHHHHHhhcCCceEEecccceeCCCCCccc---cc
Confidence 23321 11100 0 0011111 11345789999999999999988888999999999999999853100 00
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC-CCCCceEEEeCC-C-CcCHHHH
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA-QPGEFRVFNQFT-E-QFSVNQL 388 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~-~~g~~~~~ni~~-~-~~s~~el 388 (479)
.++......++..++..++.++++.+++++.+.++|+||+|+|++++.+++++. ..++ +||+++ + .+|+.|+
T Consensus 224 ---~~~~~~~~~~i~~~~~~~~~~~~~~~~g~g~~~r~~i~V~Dva~ai~~al~~~~~~~g~--~yni~~~~~~~s~~el 298 (386)
T PLN02427 224 ---DGPSEGVPRVLACFSNNLLRREPLKLVDGGQSQRTFVYIKDAIEAVLLMIENPARANGH--IFNVGNPNNEVTVRQL 298 (386)
T ss_pred ---cccccccchHHHHHHHHHhcCCCeEEECCCCceECcEeHHHHHHHHHHHHhCcccccCc--eEEeCCCCCCccHHHH
Confidence 000011134566777888889999999988899999999999999999998753 3444 999998 3 7999999
Q ss_pred HHHHHHHhhhcCC----cc---eeeecCCC----CcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHH-hccc
Q 011707 389 AALVTKAGEKLGL----DV---KTISVPNP----RVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQ-FKDR 455 (479)
Q Consensus 389 ~~~i~~~~~~~g~----~~---~~~~~~~~----~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~-~~~~ 455 (479)
++.+.+. +|. +. .....+.. ........+.+|++|+++ |||+|+++++++|+++++|++. |-..
T Consensus 299 ~~~i~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lGw~p~~~l~~gl~~~~~~~~~~~~~~ 375 (386)
T PLN02427 299 AEMMTEV---YAKVSGEPALEEPTVDVSSKEFYGEGYDDSDKRIPDMTIINKQLGWNPKTSLWDLLESTLTYQHKTYAEA 375 (386)
T ss_pred HHHHHHH---hccccccccccccccccCcccccCccccchhhccCCHHHHHHhcCCCcCccHHHHHHHHHHHHHHHHHHH
Confidence 9999998 442 11 11111110 011233455689999987 9999999999999999999764 4444
Q ss_pred CCcCC
Q 011707 456 VDSKQ 460 (479)
Q Consensus 456 ~~~~~ 460 (479)
.+.-+
T Consensus 376 ~~~~~ 380 (386)
T PLN02427 376 IKKAM 380 (386)
T ss_pred HHhhh
Confidence 44333
|
|
| >PRK10084 dTDP-glucose 4,6 dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=335.94 Aligned_cols=329 Identities=22% Similarity=0.297 Sum_probs=239.4
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCe-EEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYE-VAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
|+|||||||||||++|+++|+++|++ |+++++....... +..... ....++.++.+|++|.+
T Consensus 1 mkilITGgtG~iG~~l~~~L~~~g~~~v~~~~~~~~~~~~---------------~~~~~~--~~~~~~~~~~~Dl~d~~ 63 (352)
T PRK10084 1 MKILVTGGAGFIGSAVVRHIINNTQDSVVNVDKLTYAGNL---------------ESLADV--SDSERYVFEHADICDRA 63 (352)
T ss_pred CeEEEECCCcHHhHHHHHHHHHhCCCeEEEecCCCccchH---------------HHHHhc--ccCCceEEEEecCCCHH
Confidence 47999999999999999999999976 5556653211000 001110 01235788999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc---------CCcceEEEeeccccccC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF---------RQECHLVKLGTMGEYGT 236 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---------g~~~~~V~~SS~~v~g~ 236 (479)
++.++++..++|+|||+||.........++ ..++++|+.|+.+++++|++. +.. +|||+||..+||.
T Consensus 64 ~~~~~~~~~~~d~vih~A~~~~~~~~~~~~---~~~~~~N~~gt~~ll~~~~~~~~~~~~~~~~~~-~~i~~SS~~vyg~ 139 (352)
T PRK10084 64 ELDRIFAQHQPDAVMHLAAESHVDRSITGP---AAFIETNIVGTYVLLEAARNYWSALDEDKKNAF-RFHHISTDEVYGD 139 (352)
T ss_pred HHHHHHHhcCCCEEEECCcccCCcchhcCc---hhhhhhhhHHHHHHHHHHHHhccccccccccce-eEEEecchhhcCC
Confidence 999999866799999999976543333332 557899999999999999874 334 8999999999986
Q ss_pred CCCC--Cc-CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 237 PNID--IE-EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 237 ~~~~--~~-e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
...+ .. +...+. .+++ .+..|.+.|+.||.++|.+++.+++++|++++++|+++||||++.+
T Consensus 140 ~~~~~~~~~~~~~~~----~~E~--~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~vilr~~~v~Gp~~~~--------- 204 (352)
T PRK10084 140 LPHPDEVENSEELPL----FTET--TAYAPSSPYSASKASSDHLVRAWLRTYGLPTIVTNCSNNYGPYHFP--------- 204 (352)
T ss_pred CCccccccccccCCC----cccc--CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeccceeCCCcCc---------
Confidence 3210 00 000000 0011 2446788999999999999999998899999999999999998532
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHH
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALV 392 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i 392 (479)
..++..++..+..++++.+++++++.++|+||+|++++++.++++.. .++ +||+++ +.+|+.|+++.+
T Consensus 205 --------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~a~~~~l~~~~-~~~--~yni~~~~~~s~~~~~~~i 273 (352)
T PRK10084 205 --------EKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALYKVVTEGK-AGE--TYNIGGHNEKKNLDVVLTI 273 (352)
T ss_pred --------cchHHHHHHHHhcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHhcCC-CCc--eEEeCCCCcCcHHHHHHHH
Confidence 23456677777888888889999999999999999999999998643 344 999998 679999999999
Q ss_pred HHHhhhcCCccee--------eecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcccCCcCCCCC
Q 011707 393 TKAGEKLGLDVKT--------ISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMP 463 (479)
Q Consensus 393 ~~~~~~~g~~~~~--------~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (479)
++. +|...+. ...+.. ......+.+|++|+++ |||+|+++++++++++++|++..+++..+.....
T Consensus 274 ~~~---~~~~~p~~~~~~~~~~~~~~~--~~~~~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 348 (352)
T PRK10084 274 CDL---LDEIVPKATSYREQITYVADR--PGHDRRYAIDASKISRELGWKPQETFESGIRKTVEWYLANTEWVQNVKSGA 348 (352)
T ss_pred HHH---hccccccccchhhhccccccC--CCCCceeeeCHHHHHHHcCCCCcCCHHHHHHHHHHHHHhCHHHhhhhhccc
Confidence 998 5532211 111111 1122345689999987 9999999999999999999988766443333333
Q ss_pred ccee
Q 011707 464 SVSW 467 (479)
Q Consensus 464 ~~~~ 467 (479)
-.+|
T Consensus 349 ~~~~ 352 (352)
T PRK10084 349 YQSW 352 (352)
T ss_pred ccCC
Confidence 3333
|
|
| >PLN02695 GDP-D-mannose-3',5'-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=330.09 Aligned_cols=308 Identities=19% Similarity=0.173 Sum_probs=238.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..++|+|||||||||||++|++.|+++|++|++++|....... . ....+.++.+|++
T Consensus 18 ~~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~~~~~~~-------------------~----~~~~~~~~~~Dl~ 74 (370)
T PLN02695 18 PSEKLRICITGAGGFIASHIARRLKAEGHYIIASDWKKNEHMS-------------------E----DMFCHEFHLVDLR 74 (370)
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEeccccccc-------------------c----ccccceEEECCCC
Confidence 3467899999999999999999999999999999975321000 0 0013567889999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC--
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-- 239 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-- 239 (479)
|.+.+..+++ ++|+|||+|+...... ...+ ....+..|+.++.+++++|++.+++ +|||+||.++||....
T Consensus 75 d~~~~~~~~~--~~D~Vih~Aa~~~~~~~~~~~---~~~~~~~N~~~t~nll~aa~~~~vk-~~V~~SS~~vYg~~~~~~ 148 (370)
T PLN02695 75 VMENCLKVTK--GVDHVFNLAADMGGMGFIQSN---HSVIMYNNTMISFNMLEAARINGVK-RFFYASSACIYPEFKQLE 148 (370)
T ss_pred CHHHHHHHHh--CCCEEEEcccccCCccccccC---chhhHHHHHHHHHHHHHHHHHhCCC-EEEEeCchhhcCCccccC
Confidence 9999988887 7999999998653211 1112 1334678999999999999999987 9999999999986532
Q ss_pred ---CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccC
Q 011707 240 ---DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLD 316 (479)
Q Consensus 240 ---~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~ 316 (479)
++.|+ .+.+..|.+.|+.+|.++|++++.+++.+|++++++||++||||+....
T Consensus 149 ~~~~~~E~------------~~~p~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~----------- 205 (370)
T PLN02695 149 TNVSLKES------------DAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRIGRFHNIYGPFGTWK----------- 205 (370)
T ss_pred cCCCcCcc------------cCCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCccCCCCCcc-----------
Confidence 12221 1124567889999999999999999988999999999999999975321
Q ss_pred CCCcccchHHHHHHHHhc-CCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHH
Q 011707 317 YDGVFGTALNRFCVQAAV-GHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTK 394 (479)
Q Consensus 317 ~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~ 394 (479)
+....++..++..++. +.++.+++++.+.++|+|++|++++++.++++.. ++ +||+++ +.+|++|+++.+.+
T Consensus 206 --~~~~~~~~~~~~~~~~~~~~i~~~g~g~~~r~~i~v~D~a~ai~~~~~~~~--~~--~~nv~~~~~~s~~el~~~i~~ 279 (370)
T PLN02695 206 --GGREKAPAAFCRKALTSTDEFEMWGDGKQTRSFTFIDECVEGVLRLTKSDF--RE--PVNIGSDEMVSMNEMAEIALS 279 (370)
T ss_pred --ccccccHHHHHHHHHcCCCCeEEeCCCCeEEeEEeHHHHHHHHHHHHhccC--CC--ceEecCCCceeHHHHHHHHHH
Confidence 1001234567776665 4688899999999999999999999999887642 33 899998 67999999999998
Q ss_pred HhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 395 AGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 395 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
. .|.+.++...+.+... ....+|++|+++ |||+|+++++++++++++|++....
T Consensus 280 ~---~g~~~~i~~~~~~~~~---~~~~~d~sk~~~~lgw~p~~~l~e~i~~~~~~~~~~~~ 334 (370)
T PLN02695 280 F---ENKKLPIKHIPGPEGV---RGRNSDNTLIKEKLGWAPTMRLKDGLRITYFWIKEQIE 334 (370)
T ss_pred H---hCCCCCceecCCCCCc---cccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 7 7766666555543221 234589999987 9999999999999999999887544
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=358.80 Aligned_cols=315 Identities=23% Similarity=0.301 Sum_probs=243.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhC--CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNK--GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.++|+|||||||||||++|+++|+++ |++|+++++...... . ..+.. .....+++++.+|+
T Consensus 4 ~~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~~~~~~~-----~----------~~l~~--~~~~~~v~~~~~Dl 66 (668)
T PLN02260 4 YEPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDKLDYCSN-----L----------KNLNP--SKSSPNFKFVKGDI 66 (668)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeCCCccch-----h----------hhhhh--cccCCCeEEEECCC
Confidence 46789999999999999999999998 689999987421000 0 00000 00124789999999
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccCCCCC
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGTPNID 240 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~~~~~ 240 (479)
+|.+.+..++...++|+|||+|+.........++ ...+++|+.|+.+++++|++.+ ++ +|||+||..+||.....
T Consensus 67 ~d~~~~~~~~~~~~~D~ViHlAa~~~~~~~~~~~---~~~~~~Nv~gt~~ll~a~~~~~~vk-r~I~~SS~~vyg~~~~~ 142 (668)
T PLN02260 67 ASADLVNYLLITEGIDTIMHFAAQTHVDNSFGNS---FEFTKNNIYGTHVLLEACKVTGQIR-RFIHVSTDEVYGETDED 142 (668)
T ss_pred CChHHHHHHHhhcCCCEEEECCCccCchhhhhCH---HHHHHHHHHHHHHHHHHHHhcCCCc-EEEEEcchHHhCCCccc
Confidence 9999888877545899999999986654444333 3467899999999999999987 56 99999999999976432
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCc
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~ 320 (479)
.... ..+. .+..|.+.|+.+|.++|.+++.+.++++++++++||++||||++.+
T Consensus 143 ~~~~--------~~E~--~~~~p~~~Y~~sK~~aE~~v~~~~~~~~l~~vilR~~~VyGp~~~~---------------- 196 (668)
T PLN02260 143 ADVG--------NHEA--SQLLPTNPYSATKAGAEMLVMAYGRSYGLPVITTRGNNVYGPNQFP---------------- 196 (668)
T ss_pred cccC--------cccc--CCCCCCCCcHHHHHHHHHHHHHHHHHcCCCEEEECcccccCcCCCc----------------
Confidence 1100 0011 2345678999999999999999998889999999999999998643
Q ss_pred ccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhc
Q 011707 321 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKL 399 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~ 399 (479)
..++..++..+..++++.+++++.+.++|+||+|+|++++.++++... ++ +||+++ +.+|+.|+++.+.+. +
T Consensus 197 -~~~i~~~~~~a~~g~~i~i~g~g~~~r~~ihV~Dva~a~~~~l~~~~~-~~--vyni~~~~~~s~~el~~~i~~~---~ 269 (668)
T PLN02260 197 -EKLIPKFILLAMQGKPLPIHGDGSNVRSYLYCEDVAEAFEVVLHKGEV-GH--VYNIGTKKERRVIDVAKDICKL---F 269 (668)
T ss_pred -ccHHHHHHHHHhCCCCeEEecCCCceEeeEEHHHHHHHHHHHHhcCCC-CC--EEEECCCCeeEHHHHHHHHHHH---h
Confidence 235667788888889999999999999999999999999999976433 44 999998 679999999999998 7
Q ss_pred CCcce--eeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHhcc
Q 011707 400 GLDVK--TISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 400 g~~~~--~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
|.+.. +...+.. ......+.+|++|+++|||+|+++++|+++++++|++.+.+
T Consensus 270 g~~~~~~i~~~~~~--p~~~~~~~~d~~k~~~lGw~p~~~~~egl~~~i~w~~~~~~ 324 (668)
T PLN02260 270 GLDPEKSIKFVENR--PFNDQRYFLDDQKLKKLGWQERTSWEEGLKKTMEWYTSNPD 324 (668)
T ss_pred CCCCcceeeecCCC--CCCcceeecCHHHHHHcCCCCCCCHHHHHHHHHHHHHhChh
Confidence 76543 2222221 22233456899999889999999999999999999998765
|
|
| >PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=353.27 Aligned_cols=321 Identities=19% Similarity=0.191 Sum_probs=240.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..++|+|||||||||||++|+++|+++ |++|++++|...... .+ ....+++++.+|+
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~--------------------~~--~~~~~~~~~~gDl 369 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIGSDAIS--------------------RF--LGHPRFHFVEGDI 369 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCCchhhh--------------------hh--cCCCceEEEeccc
Confidence 346889999999999999999999986 799999998543110 00 0113688999999
Q ss_pred CChHH-HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-
Q 011707 162 CDFEF-LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI- 239 (479)
Q Consensus 162 ~d~~~-~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~- 239 (479)
+|.+. ++++++ ++|+|||+||.........++ ...+++|+.++.+++++|++.+ + +|||+||..+||....
T Consensus 370 ~d~~~~l~~~l~--~~D~ViHlAa~~~~~~~~~~~---~~~~~~Nv~~t~~ll~a~~~~~-~-~~V~~SS~~vyg~~~~~ 442 (660)
T PRK08125 370 SIHSEWIEYHIK--KCDVVLPLVAIATPIEYTRNP---LRVFELDFEENLKIIRYCVKYN-K-RIIFPSTSEVYGMCTDK 442 (660)
T ss_pred cCcHHHHHHHhc--CCCEEEECccccCchhhccCH---HHHHHhhHHHHHHHHHHHHhcC-C-eEEEEcchhhcCCCCCC
Confidence 98765 577787 899999999976644333343 3467899999999999999987 5 9999999999996533
Q ss_pred CCcCCceeecCCCCCCCCCCCC-CCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCC
Q 011707 240 DIEEGYITINHNGRTDTLPYPK-QASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~ 318 (479)
+++|+..... ..+. .|.+.|+.||.++|.+++.+++.+|++++++||++||||++.... ... .
T Consensus 443 ~~~E~~~~~~--------~~p~~~p~s~Yg~sK~~~E~~~~~~~~~~g~~~~ilR~~~vyGp~~~~~~-------~~~-~ 506 (660)
T PRK08125 443 YFDEDTSNLI--------VGPINKQRWIYSVSKQLLDRVIWAYGEKEGLRFTLFRPFNWMGPRLDNLN-------AAR-I 506 (660)
T ss_pred CcCccccccc--------cCCCCCCccchHHHHHHHHHHHHHHHHhcCCceEEEEEceeeCCCccccc-------ccc-c
Confidence 4455421100 0121 356789999999999999999889999999999999999753100 000 0
Q ss_pred CcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCC-C-CcCHHHHHHHHHH
Q 011707 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFT-E-QFSVNQLAALVTK 394 (479)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~-~-~~s~~el~~~i~~ 394 (479)
+ ...++..++.++..++++.+++++++.++|+|++|++++++.++++... .++ +|||++ + .+|++|+++.+.+
T Consensus 507 ~-~~~~i~~~i~~~~~~~~i~~~g~g~~~rd~i~v~Dva~a~~~~l~~~~~~~~g~--iyni~~~~~~~s~~el~~~i~~ 583 (660)
T PRK08125 507 G-SSRAITQLILNLVEGSPIKLVDGGKQKRCFTDIRDGIEALFRIIENKDNRCDGQ--IINIGNPDNEASIRELAEMLLA 583 (660)
T ss_pred c-ccchHHHHHHHhcCCCCeEEeCCCceeeceeeHHHHHHHHHHHHhccccccCCe--EEEcCCCCCceeHHHHHHHHHH
Confidence 0 0245778888888899998889999999999999999999999987532 344 999998 4 5999999999999
Q ss_pred HhhhcCCcceeeecCCCC-------------cccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 395 AGEKLGLDVKTISVPNPR-------------VEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 395 ~~~~~g~~~~~~~~~~~~-------------~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
. +|........+... .......+.+|++|+++ |||+|+++++++++++++|++..-+
T Consensus 584 ~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LGw~P~~~lee~l~~~i~~~~~~~~ 654 (660)
T PRK08125 584 S---FEKHPLRDHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNARRLLDWEPKIDMQETIDETLDFFLRTVD 654 (660)
T ss_pred H---hccCcccccCCccccccccccccccccccccccccCCChHHHHHHhCCCCCCcHHHHHHHHHHHHHhccc
Confidence 8 65432111111110 01122344589999987 9999999999999999999876444
|
|
| >PLN02240 UDP-glucose 4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=324.85 Aligned_cols=329 Identities=24% Similarity=0.272 Sum_probs=243.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+|||||||||||++|+++|+++|++|+++++....... ..............++.++.+|++
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~D~~ 68 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVIDNLDNSSEE-------------ALRRVKELAGDLGDNLVFHKVDLR 68 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCcchHH-------------HHHHHHHhhcccCccceEEecCcC
Confidence 4567899999999999999999999999999999864321100 000111111011246889999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CC
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DI 241 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~ 241 (479)
|++.+.++++..++|+|||+|+......... ++..++++|+.++.+++++|++.+++ +||++||.++||.... ++
T Consensus 69 ~~~~l~~~~~~~~~d~vih~a~~~~~~~~~~---~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~vyg~~~~~~~ 144 (352)
T PLN02240 69 DKEALEKVFASTRFDAVIHFAGLKAVGESVA---KPLLYYDNNLVGTINLLEVMAKHGCK-KLVFSSSATVYGQPEEVPC 144 (352)
T ss_pred CHHHHHHHHHhCCCCEEEEccccCCcccccc---CHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEccHHHhCCCCCCCC
Confidence 9999999988667999999999754332222 23567899999999999999998877 9999999999986533 55
Q ss_pred cCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH-hCCceEEeecCeeecCCCCchhhhHhhhcccCCCCc
Q 011707 242 EEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA-WGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~ 320 (479)
+|+ .+..+.+.|+.+|.++|++++.++.. .+++++++|++++||++.... ...++.+.
T Consensus 145 ~E~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~R~~~v~G~~~~~~-------~g~~~~~~ 203 (352)
T PLN02240 145 TEE--------------FPLSATNPYGRTKLFIEEICRDIHASDPEWKIILLRYFNPVGAHPSGR-------IGEDPKGI 203 (352)
T ss_pred CCC--------------CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEeecCcCCCCcccc-------ccCCCCCC
Confidence 554 34556789999999999999988765 579999999999999853210 00001111
Q ss_pred ccchHHHHHHHHhcCC--CeEEec------CCCceeccccHHHHHHHHHHHHhCC----CCCCCceEEEeCC-CCcCHHH
Q 011707 321 FGTALNRFCVQAAVGH--PLTVYG------KGGQTRGYLDIRDTVQCVELAIANP----AQPGEFRVFNQFT-EQFSVNQ 387 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~v~v~Dva~a~~~~~~~~----~~~g~~~~~ni~~-~~~s~~e 387 (479)
.. .+..++..+..++ .+.+++ ++.+.++|+|++|+|++++.++++. ...++ +||+++ +.+|++|
T Consensus 204 ~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~D~a~a~~~a~~~~~~~~~~~~~--~yni~~~~~~s~~e 280 (352)
T PLN02240 204 PN-NLMPYVQQVAVGRRPELTVFGNDYPTKDGTGVRDYIHVMDLADGHIAALRKLFTDPDIGCE--AYNLGTGKGTSVLE 280 (352)
T ss_pred cc-hHHHHHHHHHhCCCCceEEeCCCCCCCCCCEEEeeEEHHHHHHHHHHHHhhhhhccCCCCc--eEEccCCCcEeHHH
Confidence 12 2334555665554 455654 6788999999999999999988753 22234 999998 6799999
Q ss_pred HHHHHHHHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcccCC
Q 011707 388 LAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDRVD 457 (479)
Q Consensus 388 l~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~~~ 457 (479)
+++.+.+. +|.+.++...+.... ....+..|++|+++ |||+|+++++++++++++|++.....+.
T Consensus 281 l~~~i~~~---~g~~~~~~~~~~~~~--~~~~~~~d~~k~~~~lg~~p~~~l~~~l~~~~~~~~~~~~~~~ 346 (352)
T PLN02240 281 MVAAFEKA---SGKKIPLKLAPRRPG--DAEEVYASTEKAEKELGWKAKYGIDEMCRDQWNWASKNPYGYG 346 (352)
T ss_pred HHHHHHHH---hCCCCCceeCCCCCC--ChhhhhcCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCccccC
Confidence 99999998 787777666554332 22344579999987 9999999999999999999998765554
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=322.27 Aligned_cols=308 Identities=19% Similarity=0.207 Sum_probs=225.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++|+||||||+||||++|+++|+++|++|++++|....... .....+.. ...+++++.+|++|
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~---------------~~~~~~~~-~~~~~~~~~~Dl~d 71 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTVRNPDDPKN---------------THLRELEG-GKERLILCKADLQD 71 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCchhhhH---------------HHHHHhhC-CCCcEEEEecCcCC
Confidence 357899999999999999999999999999999875331100 00111111 11358889999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecc-ccccCCCC---
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTM-GEYGTPNI--- 239 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~-~v~g~~~~--- 239 (479)
.+++.++++ ++|+|||+|+... . ++...+++|+.|+.+++++|++.+++ +|||+||. .+||.+..
T Consensus 72 ~~~~~~~~~--~~d~Vih~A~~~~-----~---~~~~~~~~nv~gt~~ll~aa~~~~v~-r~V~~SS~~avyg~~~~~~~ 140 (342)
T PLN02214 72 YEALKAAID--GCDGVFHTASPVT-----D---DPEQMVEPAVNGAKFVINAAAEAKVK-RVVITSSIGAVYMDPNRDPE 140 (342)
T ss_pred hHHHHHHHh--cCCEEEEecCCCC-----C---CHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeccceeeeccCCCCCC
Confidence 999999998 8999999998642 1 23456889999999999999999887 99999995 68985432
Q ss_pred -CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCC
Q 011707 240 -DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318 (479)
Q Consensus 240 -~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~ 318 (479)
+++|+.++. ...+..+.+.|+.||.++|++++.+++++|++++++||++||||+..+..
T Consensus 141 ~~~~E~~~~~--------~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~g~~~v~lRp~~vyGp~~~~~~------------ 200 (342)
T PLN02214 141 AVVDESCWSD--------LDFCKNTKNWYCYGKMVAEQAAWETAKEKGVDLVVLNPVLVLGPPLQPTI------------ 200 (342)
T ss_pred cccCcccCCC--------hhhccccccHHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCC------------
Confidence 244543210 01233467899999999999999999888999999999999999864310
Q ss_pred CcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhhh
Q 011707 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEK 398 (479)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~~ 398 (479)
...+..++ ..+.++... ++ ++.++||||+|+|++++.+++++... + .||++++..++.|+++.+.+.++.
T Consensus 201 ---~~~~~~~~-~~~~g~~~~-~~--~~~~~~i~V~Dva~a~~~al~~~~~~-g--~yn~~~~~~~~~el~~~i~~~~~~ 270 (342)
T PLN02214 201 ---NASLYHVL-KYLTGSAKT-YA--NLTQAYVDVRDVALAHVLVYEAPSAS-G--RYLLAESARHRGEVVEILAKLFPE 270 (342)
T ss_pred ---CchHHHHH-HHHcCCccc-CC--CCCcCeeEHHHHHHHHHHHHhCcccC-C--cEEEecCCCCHHHHHHHHHHHCCC
Confidence 11122333 344555432 33 45789999999999999999876543 3 799988779999999999998321
Q ss_pred cCCcceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHhc
Q 011707 399 LGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFK 453 (479)
Q Consensus 399 ~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~~ 453 (479)
.+++....+. .......+.+|++|+++|||+| ++++|+++++++|++...
T Consensus 271 --~~~~~~~~~~--~~~~~~~~~~d~~k~~~LG~~p-~~lee~i~~~~~~~~~~~ 320 (342)
T PLN02214 271 --YPLPTKCKDE--KNPRAKPYKFTNQKIKDLGLEF-TSTKQSLYDTVKSLQEKG 320 (342)
T ss_pred --CCCCCCCccc--cCCCCCccccCcHHHHHcCCcc-cCHHHHHHHHHHHHHHcC
Confidence 1222211111 1112334458999998899999 599999999999998643
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=320.56 Aligned_cols=313 Identities=16% Similarity=0.142 Sum_probs=224.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|+||||||+||||++|+++|+++|++|++++|....... . ...... .....++.++.+|++|.
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~-------------~-~~~~~~-~~~~~~~~~~~~D~~d~ 68 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINATVRDPKDRKK-------------T-DHLLAL-DGAKERLKLFKADLLDE 68 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCCcchhh-------------H-HHHHhc-cCCCCceEEEeCCCCCc
Confidence 47899999999999999999999999999988764321100 0 000000 00124688999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccccCCC-----
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEYGTPN----- 238 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~g~~~----- 238 (479)
+.+.++++ ++|+||||||....... ..++...+++|+.|+.+++++|.+. +.+ +||++||.++|+...
T Consensus 69 ~~~~~~~~--~~d~vih~A~~~~~~~~---~~~~~~~~~~n~~g~~~ll~a~~~~~~~~-~iv~~SS~~~~~~~~~~~~~ 142 (325)
T PLN02989 69 GSFELAID--GCETVFHTASPVAITVK---TDPQVELINPAVNGTINVLRTCTKVSSVK-RVILTSSMAAVLAPETKLGP 142 (325)
T ss_pred hHHHHHHc--CCCEEEEeCCCCCCCCC---CChHHHHHHHHHHHHHHHHHHHHHcCCce-EEEEecchhheecCCccCCC
Confidence 99999998 79999999996532211 2234567899999999999999885 455 999999987765432
Q ss_pred -CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCC
Q 011707 239 -IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDY 317 (479)
Q Consensus 239 -~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~ 317 (479)
.+++|+.... +.....+.+.|+.||.++|.+++.+++++|++++++||+++|||+..+.
T Consensus 143 ~~~~~E~~~~~--------p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~------------ 202 (325)
T PLN02989 143 NDVVDETFFTN--------PSFAEERKQWYVLSKTLAEDAAWRFAKDNEIDLIVLNPGLVTGPILQPT------------ 202 (325)
T ss_pred CCccCcCCCCc--------hhHhcccccchHHHHHHHHHHHHHHHHHcCCeEEEEcCCceeCCCCCCC------------
Confidence 1234431100 0001123478999999999999999988899999999999999986532
Q ss_pred CCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhh
Q 011707 318 DGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGE 397 (479)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~ 397 (479)
..++..++..+..++.+. + .+.++|+||+|+|++++.+++++.. ++ +||++++.+|++|+++.+.+.
T Consensus 203 ----~~~~~~~i~~~~~~~~~~--~--~~~r~~i~v~Dva~a~~~~l~~~~~-~~--~~ni~~~~~s~~ei~~~i~~~-- 269 (325)
T PLN02989 203 ----LNFSVAVIVELMKGKNPF--N--TTHHRFVDVRDVALAHVKALETPSA-NG--RYIIDGPVVTIKDIENVLREF-- 269 (325)
T ss_pred ----CCchHHHHHHHHcCCCCC--C--CcCcCeeEHHHHHHHHHHHhcCccc-Cc--eEEEecCCCCHHHHHHHHHHH--
Confidence 112344556666666432 2 3458999999999999999987654 33 899976789999999999998
Q ss_pred hcCCcceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHhc
Q 011707 398 KLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFK 453 (479)
Q Consensus 398 ~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~~ 453 (479)
++.. .+...+..........+..|++|+++|||+|+++++++++++++|++.++
T Consensus 270 -~~~~-~~~~~~~~~~~~~~~~~~~~~~k~~~lg~~p~~~l~~gi~~~~~~~~~~~ 323 (325)
T PLN02989 270 -FPDL-CIADRNEDITELNSVTFNVCLDKVKSLGIIEFTPTETSLRDTVLSLKEKC 323 (325)
T ss_pred -CCCC-CCCCCCCCcccccccCcCCCHHHHHHcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 5421 11111111111122355789999988999999999999999999987643
|
|
| >PRK10675 UDP-galactose-4-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-39 Score=320.21 Aligned_cols=319 Identities=24% Similarity=0.276 Sum_probs=234.7
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||||||||++|+++|+++|++|+++++..++.. .....+....+.++.++.+|++|.+.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~Dl~d~~~ 64 (338)
T PRK10675 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVVILDNLCNSKR----------------SVLPVIERLGGKHPTFVEGDIRNEAL 64 (338)
T ss_pred CeEEEECCCChHHHHHHHHHHHCCCeEEEEecCCCchH----------------hHHHHHHHhcCCCceEEEccCCCHHH
Confidence 57999999999999999999999999999876433210 01111111223457788999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGY 245 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~ 245 (479)
+.++++..++|+|||+|+.........+ ....+++|+.++.+++++|++.+++ +||++||.++||.... +++|+
T Consensus 65 ~~~~~~~~~~d~vvh~a~~~~~~~~~~~---~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~yg~~~~~~~~E~- 139 (338)
T PRK10675 65 LTEILHDHAIDTVIHFAGLKAVGESVQK---PLEYYDNNVNGTLRLISAMRAANVK-NLIFSSSATVYGDQPKIPYVES- 139 (338)
T ss_pred HHHHHhcCCCCEEEECCccccccchhhC---HHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhhCCCCCCccccc-
Confidence 9999886679999999987543322222 2456789999999999999999887 9999999999986543 44454
Q ss_pred eeecCCCCCCCCCCCC-CCCchhhhhhHHHHHHHHHHHHHh-CCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 246 ITINHNGRTDTLPYPK-QASSFYHLSKVHDSHNIAFTCKAW-GIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~-~~~~~Y~~sK~~~E~~~~~~~~~~-gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
.+. .|.+.|+.+|.++|++++.+++.+ +++++++|++++|||...... ..+..+....
T Consensus 140 -------------~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~-------g~~~~~~~~~ 199 (338)
T PRK10675 140 -------------FPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDM-------GEDPQGIPNN 199 (338)
T ss_pred -------------cCCCCCCChhHHHHHHHHHHHHHHHHhcCCCcEEEEEeeeecCCCccccc-------ccCCCCChhH
Confidence 122 457899999999999999988764 799999999999998421000 0000111112
Q ss_pred hHHHHHHHHhcCC--CeEEec------CCCceeccccHHHHHHHHHHHHhCC--CCCCCceEEEeCC-CCcCHHHHHHHH
Q 011707 324 ALNRFCVQAAVGH--PLTVYG------KGGQTRGYLDIRDTVQCVELAIANP--AQPGEFRVFNQFT-EQFSVNQLAALV 392 (479)
Q Consensus 324 ~~~~~~~~~~~~~--~~~~~~------~~~~~~~~v~v~Dva~a~~~~~~~~--~~~g~~~~~ni~~-~~~s~~el~~~i 392 (479)
++ .++.++..++ .+.+++ ++.+.++|+|++|+|++++.+++.. ...++ +|||++ +.+|+.|+++.+
T Consensus 200 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~v~D~a~~~~~~~~~~~~~~~~~--~~ni~~~~~~s~~e~~~~i 276 (338)
T PRK10675 200 LM-PYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVAAMEKLANKPGVH--IYNLGAGVGSSVLDVVNAF 276 (338)
T ss_pred HH-HHHHHHHhcCCCceEEeCCcCCCCCCcEEEeeEEHHHHHHHHHHHHHhhhccCCCc--eEEecCCCceeHHHHHHHH
Confidence 23 3444455443 355554 5678899999999999999999853 22234 999998 679999999999
Q ss_pred HHHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 393 TKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 393 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
.+. +|.++++...+.... ......+|++|+++ |||+|+++++++++++++|++.++.
T Consensus 277 ~~~---~g~~~~~~~~~~~~~--~~~~~~~~~~k~~~~lg~~p~~~~~~~~~~~~~~~~~~~~ 334 (338)
T PRK10675 277 SKA---CGKPVNYHFAPRREG--DLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQ 334 (338)
T ss_pred HHH---hCCCCCeeeCCCCCC--chhhhhcCHHHHHHHhCCCCcCcHHHHHHHHHHHHHhhhh
Confidence 998 787766655543222 22345689999987 9999999999999999999988654
|
|
| >TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=316.44 Aligned_cols=306 Identities=25% Similarity=0.350 Sum_probs=236.9
Q ss_pred EEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|||||||||||.+++++|+++| ++|+++++....... +...... ...++.++.+|++|++
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~---------------~~~~~~~--~~~~~~~~~~Dl~~~~ 63 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNL---------------ENLADLE--DNPRYRFVKGDIGDRE 63 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhh---------------hhhhhhc--cCCCcEEEEcCCcCHH
Confidence 58999999999999999999987 789988764221100 0011111 1136888999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC--CCcC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI--DIEE 243 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~--~~~e 243 (479)
++.++++..++|+|||+|+.........+ +..++++|+.|+.+++++|++.+.+.++|++||..+||.... +..|
T Consensus 64 ~~~~~~~~~~~d~vi~~a~~~~~~~~~~~---~~~~~~~n~~~~~~l~~~~~~~~~~~~~i~~Ss~~v~g~~~~~~~~~e 140 (317)
T TIGR01181 64 LVSRLFTEHQPDAVVHFAAESHVDRSISG---PAAFIETNVVGTYTLLEAVRKYWHEFRFHHISTDEVYGDLEKGDAFTE 140 (317)
T ss_pred HHHHHHhhcCCCEEEEcccccCchhhhhC---HHHHHHHHHHHHHHHHHHHHhcCCCceEEEeeccceeCCCCCCCCcCC
Confidence 99999986569999999997654333322 345689999999999999998765458999999999987543 3344
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
. .+..+.+.|+.+|..+|.+++.++++.+++++++||+++|||+..+ ..
T Consensus 141 ~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~R~~~i~G~~~~~-----------------~~ 189 (317)
T TIGR01181 141 T--------------TPLAPSSPYSASKAASDHLVRAYHRTYGLPALITRCSNNYGPYQFP-----------------EK 189 (317)
T ss_pred C--------------CCCCCCCchHHHHHHHHHHHHHHHHHhCCCeEEEEeccccCCCCCc-----------------cc
Confidence 3 2345678999999999999999988889999999999999997543 23
Q ss_pred hHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCc
Q 011707 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLD 402 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~ 402 (479)
++..++..+..++++.+++++++.++|+|++|+++++..++++.. .++ +||+++ +.+|+.|+++.+.+. +|.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~~~~~~~~~~-~~~--~~~~~~~~~~s~~~~~~~i~~~---~~~~ 263 (317)
T TIGR01181 190 LIPLMITNALAGKPLPVYGDGQQVRDWLYVEDHCRAIYLVLEKGR-VGE--TYNIGGGNERTNLEVVETILEL---LGKD 263 (317)
T ss_pred HHHHHHHHHhcCCCceEeCCCceEEeeEEHHHHHHHHHHHHcCCC-CCc--eEEeCCCCceeHHHHHHHHHHH---hCCC
Confidence 566778888888888888998999999999999999999998643 344 999998 679999999999998 6654
Q ss_pred ceeee-cCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHh
Q 011707 403 VKTIS-VPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 403 ~~~~~-~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~ 452 (479)
..... .+... .....+.+|++|+++ |||+|+++++++++.+++|++..
T Consensus 264 ~~~~~~~~~~~--~~~~~~~~~~~k~~~~lG~~p~~~~~~~i~~~~~~~~~~ 313 (317)
T TIGR01181 264 EDLITHVEDRP--GHDRRYAIDASKIKRELGWAPKYTFEEGLRKTVQWYLDN 313 (317)
T ss_pred cccccccCCCc--cchhhhcCCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhc
Confidence 33221 11111 122334589999976 99999999999999999998664
|
This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor. |
| >PLN00198 anthocyanidin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=318.01 Aligned_cols=315 Identities=18% Similarity=0.160 Sum_probs=224.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
++++|+||||||+||||++|+++|+++|++|++++|....... . .....+.. ..++.++.+|++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~-------------~-~~~~~~~~--~~~~~~~~~Dl~ 69 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKK-------------I-AHLRALQE--LGDLKIFGADLT 69 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHH-------------H-HHHHhcCC--CCceEEEEcCCC
Confidence 4568899999999999999999999999999888765321100 0 00001110 135889999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccccCCC---
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEYGTPN--- 238 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~g~~~--- 238 (479)
|.+++.++++ ++|+|||+|+.... ...++ ...++++|+.|+.++++++.+. +++ +|||+||.++||...
T Consensus 70 d~~~~~~~~~--~~d~vih~A~~~~~--~~~~~--~~~~~~~nv~g~~~ll~a~~~~~~~~-~~v~~SS~~~~g~~~~~~ 142 (338)
T PLN00198 70 DEESFEAPIA--GCDLVFHVATPVNF--ASEDP--ENDMIKPAIQGVHNVLKACAKAKSVK-RVILTSSAAAVSINKLSG 142 (338)
T ss_pred ChHHHHHHHh--cCCEEEEeCCCCcc--CCCCh--HHHHHHHHHHHHHHHHHHHHhcCCcc-EEEEeecceeeeccCCCC
Confidence 9999999998 79999999985321 11122 2245689999999999999886 466 999999999998532
Q ss_pred --CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccC
Q 011707 239 --IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLD 316 (479)
Q Consensus 239 --~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~ 316 (479)
.+..|+.+.... ....+..|.+.|+.||.++|.+++.+++++|++++++||++||||++....
T Consensus 143 ~~~~~~E~~~~~~~-----~~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~R~~~vyGp~~~~~~---------- 207 (338)
T PLN00198 143 TGLVMNEKNWTDVE-----FLTSEKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGPSLTSDI---------- 207 (338)
T ss_pred CCceeccccCCchh-----hhhhcCCccchhHHHHHHHHHHHHHHHHhcCceEEEEeCCceECCCccCCC----------
Confidence 234444221100 000122457889999999999999999989999999999999999853210
Q ss_pred CCCcccchHHHHHHHHhcCCCeEEec-CCCc----eeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHH
Q 011707 317 YDGVFGTALNRFCVQAAVGHPLTVYG-KGGQ----TRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAAL 391 (479)
Q Consensus 317 ~~g~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~ 391 (479)
...+ .++..+..++++.+.+ ++.+ .++|+||+|++++++.+++.+...+ .|+.++..+|+.|+++.
T Consensus 208 -----~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~V~D~a~a~~~~~~~~~~~~---~~~~~~~~~s~~el~~~ 278 (338)
T PLN00198 208 -----PSSL-SLAMSLITGNEFLINGLKGMQMLSGSISITHVEDVCRAHIFLAEKESASG---RYICCAANTSVPELAKF 278 (338)
T ss_pred -----CCcH-HHHHHHHcCCccccccccccccccCCcceeEHHHHHHHHHHHhhCcCcCC---cEEEecCCCCHHHHHHH
Confidence 1122 2344566676665554 2322 3799999999999999998754433 57655577999999999
Q ss_pred HHHHhhhcCC-cceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHH
Q 011707 392 VTKAGEKLGL-DVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 392 i~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
+.+. .+. +.+....+.+ ....+.+|++|++++||+|+++++|+++++++|++.
T Consensus 279 i~~~---~~~~~~~~~~~~~~----~~~~~~~~~~k~~~~G~~p~~~l~~gi~~~~~~~~~ 332 (338)
T PLN00198 279 LIKR---YPQYQVPTDFGDFP----SKAKLIISSEKLISEGFSFEYGIEEIYDQTVEYFKA 332 (338)
T ss_pred HHHH---CCCCCCCccccccC----CCCccccChHHHHhCCceecCcHHHHHHHHHHHHHH
Confidence 9987 432 2222221111 122345899999889999999999999999999875
|
|
| >PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=315.39 Aligned_cols=280 Identities=18% Similarity=0.223 Sum_probs=219.1
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+||||||+||||++|+++|+++| +|+++++.. ..+.+|++|.+.
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g-~V~~~~~~~----------------------------------~~~~~Dl~d~~~ 45 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG-NLIALDVHS----------------------------------TDYCGDFSNPEG 45 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC-CEEEecccc----------------------------------ccccCCCCCHHH
Confidence 589999999999999999999999 798887631 124689999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGY 245 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~ 245 (479)
+.++++..++|+|||||+.........+| ...+++|+.|+.+++++|++.| .+|||+||..|||.... ++.|+
T Consensus 46 ~~~~~~~~~~D~Vih~Aa~~~~~~~~~~~---~~~~~~N~~~~~~l~~aa~~~g--~~~v~~Ss~~Vy~~~~~~p~~E~- 119 (299)
T PRK09987 46 VAETVRKIRPDVIVNAAAHTAVDKAESEP---EFAQLLNATSVEAIAKAANEVG--AWVVHYSTDYVFPGTGDIPWQET- 119 (299)
T ss_pred HHHHHHhcCCCEEEECCccCCcchhhcCH---HHHHHHHHHHHHHHHHHHHHcC--CeEEEEccceEECCCCCCCcCCC-
Confidence 99999876799999999987655544443 4456899999999999999988 38999999999987543 56665
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
.+..|.+.|+.+|+++|++++.+ ..+++|+|+++||||+.+ .++
T Consensus 120 -------------~~~~P~~~Yg~sK~~~E~~~~~~----~~~~~ilR~~~vyGp~~~-------------------~~~ 163 (299)
T PRK09987 120 -------------DATAPLNVYGETKLAGEKALQEH----CAKHLIFRTSWVYAGKGN-------------------NFA 163 (299)
T ss_pred -------------CCCCCCCHHHHHHHHHHHHHHHh----CCCEEEEecceecCCCCC-------------------CHH
Confidence 35567899999999999988764 346799999999999742 245
Q ss_pred HHHHHHHhcCCCeEEecC--CCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCc
Q 011707 326 NRFCVQAAVGHPLTVYGK--GGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLD 402 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~--~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~ 402 (479)
..++..+..++++.++++ +.+.+++.+++|++.++..++...... + +||+++ +.+|+.|+++.+.+.+..+|.+
T Consensus 164 ~~~~~~~~~~~~~~v~~d~~g~~~~~~~~~d~~~~~~~~~~~~~~~~-g--iyni~~~~~~s~~e~~~~i~~~~~~~g~~ 240 (299)
T PRK09987 164 KTMLRLAKEREELSVINDQFGAPTGAELLADCTAHAIRVALNKPEVA-G--LYHLVASGTTTWHDYAALVFEEARKAGIT 240 (299)
T ss_pred HHHHHHHhcCCCeEEeCCCcCCCCCHHHHHHHHHHHHHHhhccCCCC-C--eEEeeCCCCccHHHHHHHHHHHHHhcCCC
Confidence 677777778889999887 677777778888999998888654332 3 999998 6799999999998864334544
Q ss_pred c---eeeecCC---CCcccccccccCCchHHHH-cCCcccccHHHHHHHHHH
Q 011707 403 V---KTISVPN---PRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLN 447 (479)
Q Consensus 403 ~---~~~~~~~---~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~ 447 (479)
. .+...+. +.......+..+|++|+++ |||+|. +|+++|+.+++
T Consensus 241 ~~~~~i~~~~~~~~~~~~~rp~~~~ld~~k~~~~lg~~~~-~~~~~l~~~~~ 291 (299)
T PRK09987 241 LALNKLNAVPTSAYPTPARRPHNSRLNTEKFQQNFALVLP-DWQVGVKRMLT 291 (299)
T ss_pred cCcCeeeecchhhcCCCCCCCCcccCCHHHHHHHhCCCCc-cHHHHHHHHHH
Confidence 3 2333321 1112233455799999988 999986 99999999986
|
|
| >PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-39 Score=313.33 Aligned_cols=293 Identities=19% Similarity=0.180 Sum_probs=211.4
Q ss_pred EEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh---H
Q 011707 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF---E 165 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~---~ 165 (479)
||||||+||||++|+++|+++|++|+++.+...... ....+..+|++|. +
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~~~~~---------------------------~~~~~~~~~~~d~~~~~ 54 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGT---------------------------KFVNLVDLDIADYMDKE 54 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCCCcch---------------------------HHHhhhhhhhhhhhhHH
Confidence 899999999999999999999997665543221100 0011123455443 3
Q ss_pred H-HHHHhhh---cCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-C
Q 011707 166 F-LSESFKS---FEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-D 240 (479)
Q Consensus 166 ~-~~~~~~~---~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~ 240 (479)
. ++++++. .++|+|||+||..... ..++ ..+++.|+.++.+++++|++.+ ++|||+||.++||.... +
T Consensus 55 ~~~~~~~~~~~~~~~d~Vih~A~~~~~~--~~~~---~~~~~~n~~~t~~ll~~~~~~~--~~~i~~SS~~vyg~~~~~~ 127 (308)
T PRK11150 55 DFLAQIMAGDDFGDIEAIFHEGACSSTT--EWDG---KYMMDNNYQYSKELLHYCLERE--IPFLYASSAATYGGRTDDF 127 (308)
T ss_pred HHHHHHhcccccCCccEEEECceecCCc--CCCh---HHHHHHHHHHHHHHHHHHHHcC--CcEEEEcchHHhCcCCCCC
Confidence 3 2333321 2699999999864432 1122 3467899999999999999987 37999999999997543 3
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCc
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~ 320 (479)
..|+ .+..|.+.|+.+|.++|++++.++..++++++++||++||||++.+. +.
T Consensus 128 ~~E~--------------~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~-------------~~ 180 (308)
T PRK11150 128 IEER--------------EYEKPLNVYGYSKFLFDEYVRQILPEANSQICGFRYFNVYGPREGHK-------------GS 180 (308)
T ss_pred CccC--------------CCCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeeeeecCCCCCCC-------------Cc
Confidence 3333 24456789999999999999999888899999999999999986431 11
Q ss_pred ccchHHHHHHHHhcCCCeEEe-cCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhh
Q 011707 321 FGTALNRFCVQAAVGHPLTVY-GKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEK 398 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~ 398 (479)
....+..+..++.++..+.++ ++++..++|+||+|++++++.++++.. ++ +||+++ ..+|+.|+++.+.+.
T Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~g~~~~~r~~i~v~D~a~a~~~~~~~~~--~~--~yni~~~~~~s~~el~~~i~~~--- 253 (308)
T PRK11150 181 MASVAFHLNNQLNNGENPKLFEGSENFKRDFVYVGDVAAVNLWFWENGV--SG--IFNCGTGRAESFQAVADAVLAY--- 253 (308)
T ss_pred cchhHHHHHHHHhcCCCCEEecCCCceeeeeeeHHHHHHHHHHHHhcCC--CC--eEEcCCCCceeHHHHHHHHHHH---
Confidence 223344566677778765555 556678999999999999999998642 33 999998 569999999999998
Q ss_pred cCCcceeeecCCCC--cccccccccCCchHHHHcCCcccc-cHHHHHHHHHHHHH
Q 011707 399 LGLDVKTISVPNPR--VEAEEHYYNAKHTKLIELGLQPHI-LSDSLLDSLLNFAI 450 (479)
Q Consensus 399 ~g~~~~~~~~~~~~--~~~~~~~~~~d~~k~~~lG~~p~~-~~~~~~~~~~~~~~ 450 (479)
+|.. ++...+.+. ..........|++|++++||+|+. +++++++++++|+.
T Consensus 254 ~~~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~~g~~p~~~~~~~gl~~~~~~~~ 307 (308)
T PRK11150 254 HKKG-EIEYIPFPDKLKGRYQAFTQADLTKLRAAGYDKPFKTVAEGVAEYMAWLN 307 (308)
T ss_pred hCCC-cceeccCccccccccceecccCHHHHHhcCCCCCCCCHHHHHHHHHHHhh
Confidence 6532 222222221 111223456899999999999975 99999999999974
|
|
| >PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=311.61 Aligned_cols=296 Identities=18% Similarity=0.208 Sum_probs=224.0
Q ss_pred EEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHHHH
Q 011707 90 MIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSE 169 (479)
Q Consensus 90 LVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~~~ 169 (479)
||||||||||++|++.|++.|++|+++.+. ..+|++|.+++.+
T Consensus 1 lItGa~GfiG~~l~~~L~~~g~~v~~~~~~-------------------------------------~~~Dl~~~~~l~~ 43 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEALGFTNLVLRTH-------------------------------------KELDLTRQADVEA 43 (306)
T ss_pred CcccCCCcccHHHHHHHHhCCCcEEEeecc-------------------------------------ccCCCCCHHHHHH
Confidence 699999999999999999999988765321 1589999999999
Q ss_pred HhhhcCCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCcee
Q 011707 170 SFKSFEPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGYIT 247 (479)
Q Consensus 170 ~~~~~~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~~~ 247 (479)
+++..++|+|||||+..... ....++ ...+++|+.++.+++++|++.+++ +|||+||..|||.... +++|+.+.
T Consensus 44 ~~~~~~~d~Vih~A~~~~~~~~~~~~~---~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E~~~~ 119 (306)
T PLN02725 44 FFAKEKPTYVILAAAKVGGIHANMTYP---ADFIRENLQIQTNVIDAAYRHGVK-KLLFLGSSCIYPKFAPQPIPETALL 119 (306)
T ss_pred HHhccCCCEEEEeeeeecccchhhhCc---HHHHHHHhHHHHHHHHHHHHcCCC-eEEEeCceeecCCCCCCCCCHHHhc
Confidence 99877899999999975421 122232 346789999999999999999987 9999999999996533 56665321
Q ss_pred ecCCCCCCCCCCCCCCCc-hhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHH
Q 011707 248 INHNGRTDTLPYPKQASS-FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~-~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~ 326 (479)
..+..|.+ .|+.+|.++|++++.+.+.++++++++||++||||++.... ...+.....+.
T Consensus 120 ----------~~~~~p~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~~~~~~---------~~~~~~~~~i~ 180 (306)
T PLN02725 120 ----------TGPPEPTNEWYAIAKIAGIKMCQAYRIQYGWDAISGMPTNLYGPHDNFHP---------ENSHVIPALIR 180 (306)
T ss_pred ----------cCCCCCCcchHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCC---------CCCcccHHHHH
Confidence 01223333 59999999999999998888999999999999999753100 00111122333
Q ss_pred HHHHHHhcCCCeEE-ecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCcce
Q 011707 327 RFCVQAAVGHPLTV-YGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVK 404 (479)
Q Consensus 327 ~~~~~~~~~~~~~~-~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~~ 404 (479)
.++.....+.++.+ ++++.+.++|+|++|++++++.++++.... + .||+++ ..+|+.|+++.+.+. ++.+..
T Consensus 181 ~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dv~~~~~~~~~~~~~~-~--~~ni~~~~~~s~~e~~~~i~~~---~~~~~~ 254 (306)
T PLN02725 181 RFHEAKANGAPEVVVWGSGSPLREFLHVDDLADAVVFLMRRYSGA-E--HVNVGSGDEVTIKELAELVKEV---VGFEGE 254 (306)
T ss_pred HHHHHhhcCCCeEEEcCCCCeeeccccHHHHHHHHHHHHhccccC-c--ceEeCCCCcccHHHHHHHHHHH---hCCCCc
Confidence 44444456666665 778889999999999999999999875332 3 789998 679999999999998 676655
Q ss_pred eeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHhc
Q 011707 405 TISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFK 453 (479)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~~ 453 (479)
+...+... .......+|++|+++|||+|+++++++++++++|+....
T Consensus 255 ~~~~~~~~--~~~~~~~~d~~k~~~lg~~p~~~~~~~l~~~~~~~~~~~ 301 (306)
T PLN02725 255 LVWDTSKP--DGTPRKLMDSSKLRSLGWDPKFSLKDGLQETYKWYLENY 301 (306)
T ss_pred eeecCCCC--CcccccccCHHHHHHhCCCCCCCHHHHHHHHHHHHHhhh
Confidence 54433221 122345689999988999999999999999999987643
|
|
| >PLN02896 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=313.21 Aligned_cols=320 Identities=16% Similarity=0.184 Sum_probs=222.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
..+|+||||||+||||++++++|+++|++|+++++...... .....+. ...+++++.+|++|
T Consensus 8 ~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r~~~~~~----------------~~~~~~~--~~~~~~~~~~Dl~~ 69 (353)
T PLN02896 8 SATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLRDPAKSL----------------HLLSKWK--EGDRLRLFRADLQE 69 (353)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChHHHH----------------HHHHhhc--cCCeEEEEECCCCC
Confidence 35789999999999999999999999999999887532110 0011111 12468899999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCccc--cccccccc--chhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccCCC
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPY--SMIDRSRA--VFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGTPN 238 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~--~~~~~~~~--~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~~~ 238 (479)
.+.+.++++ ++|+|||+|+...... ...++.++ ..+++.|+.|+.+++++|++.+ ++ +||++||.++||...
T Consensus 70 ~~~~~~~~~--~~d~Vih~A~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~~ll~~~~~~~~~~-~~v~~SS~~vyg~~~ 146 (353)
T PLN02896 70 EGSFDEAVK--GCDGVFHVAASMEFDVSSDHNNIEEYVQSKVIDPAIKGTLNVLKSCLKSKTVK-RVVFTSSISTLTAKD 146 (353)
T ss_pred HHHHHHHHc--CCCEEEECCccccCCccccccchhhhhhHHhHHHHHHHHHHHHHHHHhcCCcc-EEEEEechhhccccc
Confidence 999999998 7999999999765432 22233222 2345667899999999998875 55 999999999998532
Q ss_pred ------CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhh
Q 011707 239 ------IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 239 ------~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
.+++|+... ..+....+..+.+.|+.||.++|++++.+++.+|++++++||++||||+..+.
T Consensus 147 ~~~~~~~~~~E~~~~-----p~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~------- 214 (353)
T PLN02896 147 SNGRWRAVVDETCQT-----PIDHVWNTKASGWVYVLSKLLTEEAAFKYAKENGIDLVSVITTTVAGPFLTPS------- 214 (353)
T ss_pred cCCCCCCccCcccCC-----cHHHhhccCCCCccHHHHHHHHHHHHHHHHHHcCCeEEEEcCCcccCCCcCCC-------
Confidence 123332100 00000001234568999999999999999999999999999999999986431
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCe--EEecC---CCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHH
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPL--TVYGK---GGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQ 387 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~---~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~e 387 (479)
+...+..++. ...|... .+.+. ....++||||+|+|++++.+++.+...+ +|++++..+++.|
T Consensus 215 --------~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~dfi~v~Dva~a~~~~l~~~~~~~---~~~~~~~~~s~~e 282 (353)
T PLN02896 215 --------VPSSIQVLLS-PITGDSKLFSILSAVNSRMGSIALVHIEDICDAHIFLMEQTKAEG---RYICCVDSYDMSE 282 (353)
T ss_pred --------CCchHHHHHH-HhcCCccccccccccccccCceeEEeHHHHHHHHHHHHhCCCcCc---cEEecCCCCCHHH
Confidence 1222322222 2234321 12211 1124699999999999999998754332 6877667899999
Q ss_pred HHHHHHHHhhhcCC-cceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHhcc
Q 011707 388 LAALVTKAGEKLGL-DVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 388 l~~~i~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
+++.+.+. ++. .+.+...+..... .....|++++++|||+|+++++++++++++|+..+.-
T Consensus 283 l~~~i~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~lGw~p~~~l~~~i~~~~~~~~~~~~ 344 (353)
T PLN02896 283 LINHLSKE---YPCSNIQVRLDEEKRGS---IPSEISSKKLRDLGFEYKYGIEEIIDQTIDCCVDHGF 344 (353)
T ss_pred HHHHHHHh---CCCCCccccccccccCc---cccccCHHHHHHcCCCccCCHHHHHHHHHHHHHHCCC
Confidence 99999998 542 2222222221111 1234688999889999999999999999999987655
|
|
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=309.16 Aligned_cols=308 Identities=16% Similarity=0.174 Sum_probs=218.7
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|+|||||||||||++|+++|+++|++|++++|....... ...+..+. ....+++++.+|++|+
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~--------------~~~~~~~~-~~~~~~~~~~~Dl~~~ 67 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATVRDPNDPKK--------------TEHLLALD-GAKERLHLFKANLLEE 67 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEEcCCCchhh--------------HHHHHhcc-CCCCceEEEeccccCc
Confidence 46899999999999999999999999999998875321000 00000010 0124788999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccc--cccCCC---
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMG--EYGTPN--- 238 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~--v~g~~~--- 238 (479)
+.+.++++ ++|+|||+|+.... ...++ ...++++|+.|+.+++++|++. +++ +|||+||.+ +|+...
T Consensus 68 ~~~~~~~~--~~d~Vih~A~~~~~--~~~~~--~~~~~~~nv~gt~~ll~a~~~~~~~~-~~v~~SS~~~~~y~~~~~~~ 140 (322)
T PLN02662 68 GSFDSVVD--GCEGVFHTASPFYH--DVTDP--QAELIDPAVKGTLNVLRSCAKVPSVK-RVVVTSSMAAVAYNGKPLTP 140 (322)
T ss_pred chHHHHHc--CCCEEEEeCCcccC--CCCCh--HHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEccCHHHhcCCCcCCCC
Confidence 99999998 79999999986431 11222 1256789999999999999987 776 999999976 365321
Q ss_pred -CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCC
Q 011707 239 -IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDY 317 (479)
Q Consensus 239 -~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~ 317 (479)
.+++|+... .+..+....+.|+.+|.++|++++.++++++++++++||+++|||+..+.
T Consensus 141 ~~~~~E~~~~--------~p~~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lRp~~v~Gp~~~~~------------ 200 (322)
T PLN02662 141 DVVVDETWFS--------DPAFCEESKLWYVLSKTLAEEAAWKFAKENGIDMVTINPAMVIGPLLQPT------------ 200 (322)
T ss_pred CCcCCcccCC--------ChhHhhcccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCcccCCCCCCC------------
Confidence 123333100 00001112368999999999999999988999999999999999986431
Q ss_pred CCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhh
Q 011707 318 DGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGE 397 (479)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~ 397 (479)
......++..++.+++. + +.+.++|+||+|+|++++.+++++...+ .||+++..+|++|+++.+.+.
T Consensus 201 ----~~~~~~~~~~~~~~~~~--~--~~~~~~~i~v~Dva~a~~~~~~~~~~~~---~~~~~g~~~s~~e~~~~i~~~-- 267 (322)
T PLN02662 201 ----LNTSAEAILNLINGAQT--F--PNASYRWVDVRDVANAHIQAFEIPSASG---RYCLVERVVHYSEVVKILHEL-- 267 (322)
T ss_pred ----CCchHHHHHHHhcCCcc--C--CCCCcCeEEHHHHHHHHHHHhcCcCcCC---cEEEeCCCCCHHHHHHHHHHH--
Confidence 01233445555555542 2 2467899999999999999999765443 688877789999999999997
Q ss_pred hcCCcceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHH
Q 011707 398 KLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 398 ~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
++.. .+.... .........+.+|++|+++|||+| ++++++++++++|++.
T Consensus 268 -~~~~-~~~~~~-~~~~~~~~~~~~d~~k~~~lg~~~-~~~~~~l~~~~~~~~~ 317 (322)
T PLN02662 268 -YPTL-QLPEKC-ADDKPYVPTYQVSKEKAKSLGIEF-IPLEVSLKDTVESLKE 317 (322)
T ss_pred -CCCC-CCCCCC-CCccccccccccChHHHHHhCCcc-ccHHHHHHHHHHHHHH
Confidence 4421 110000 011112344568999998899997 5999999999999864
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=308.03 Aligned_cols=306 Identities=18% Similarity=0.184 Sum_probs=220.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc--cCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS--LTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~Dl~ 162 (479)
.+|+|||||||||||++++++|+++|++|+++.|...... ....... ....+++++.+|++
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~Dl~ 66 (322)
T PLN02986 4 GGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRDLTDRK-----------------KTEHLLALDGAKERLKLFKADLL 66 (322)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCCcchH-----------------HHHHHHhccCCCCceEEEecCCC
Confidence 4789999999999999999999999999998877433110 0001100 01246889999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccc--cCCC-
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEY--GTPN- 238 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~--g~~~- 238 (479)
|.+.+.++++ ++|+|||+|+.... ...++ ...++++|+.|+.+++++|++. +++ +|||+||.++| +...
T Consensus 67 ~~~~~~~~~~--~~d~vih~A~~~~~--~~~~~--~~~~~~~nv~gt~~ll~~~~~~~~v~-rvV~~SS~~~~~~~~~~~ 139 (322)
T PLN02986 67 EESSFEQAIE--GCDAVFHTASPVFF--TVKDP--QTELIDPALKGTINVLNTCKETPSVK-RVILTSSTAAVLFRQPPI 139 (322)
T ss_pred CcchHHHHHh--CCCEEEEeCCCcCC--CCCCc--hhhhhHHHHHHHHHHHHHHHhcCCcc-EEEEecchhheecCCccC
Confidence 9999999998 79999999996432 11222 1346789999999999999985 666 99999998754 3321
Q ss_pred ---CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhccc
Q 011707 239 ---IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRL 315 (479)
Q Consensus 239 ---~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~ 315 (479)
.+++|+.+.. +..+..+.+.|+.||.++|.+++.+.+++|++++++||++||||+..+..
T Consensus 140 ~~~~~~~E~~~~~--------p~~~~~~~~~Y~~sK~~aE~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~--------- 202 (322)
T PLN02986 140 EANDVVDETFFSD--------PSLCRETKNWYPLSKILAENAAWEFAKDNGIDMVVLNPGFICGPLLQPTL--------- 202 (322)
T ss_pred CCCCCcCcccCCC--------hHHhhccccchHHHHHHHHHHHHHHHHHhCCeEEEEcccceeCCCCCCCC---------
Confidence 1233432210 00011345789999999999999999989999999999999999754310
Q ss_pred CCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHH
Q 011707 316 DYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKA 395 (479)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~ 395 (479)
.....++..+..++++ ++ .+.++|+||+|+|++++.+++++... + +||++++.+|+.|+++.+.+.
T Consensus 203 -------~~~~~~~~~~~~g~~~--~~--~~~~~~v~v~Dva~a~~~al~~~~~~-~--~yni~~~~~s~~e~~~~i~~~ 268 (322)
T PLN02986 203 -------NFSVELIVDFINGKNL--FN--NRFYRFVDVRDVALAHIKALETPSAN-G--RYIIDGPIMSVNDIIDILREL 268 (322)
T ss_pred -------CccHHHHHHHHcCCCC--CC--CcCcceeEHHHHHHHHHHHhcCcccC-C--cEEEecCCCCHHHHHHHHHHH
Confidence 1123455556666653 33 55789999999999999999986543 3 799976789999999999998
Q ss_pred hhhcCCcceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHH
Q 011707 396 GEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 396 ~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
++. ..+... .+........+.+|++|+++|||+|+ +++|++.++++|+..
T Consensus 269 ---~~~-~~~~~~-~~~~~~~~~~~~~d~~~~~~lg~~~~-~l~e~~~~~~~~~~~ 318 (322)
T PLN02986 269 ---FPD-LCIADT-NEESEMNEMICKVCVEKVKNLGVEFT-PMKSSLRDTILSLKE 318 (322)
T ss_pred ---CCC-CCCCCC-CccccccccCCccCHHHHHHcCCccc-CHHHHHHHHHHHHHH
Confidence 431 121111 11112222223589999988999997 899999999999865
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=310.89 Aligned_cols=313 Identities=14% Similarity=0.163 Sum_probs=217.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc--CCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL--TGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~ 162 (479)
..|+||||||+||||++|+++|+++|++|++++|...... ........ ...+++++.+|++
T Consensus 4 ~~k~iLVTGatGfIGs~l~~~L~~~G~~V~~~~r~~~~~~-----------------~~~~~~~~~~~~~~~~~v~~Dl~ 66 (351)
T PLN02650 4 QKETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPANVK-----------------KVKHLLDLPGATTRLTLWKADLA 66 (351)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHCCCEEEEEEcCcchhH-----------------HHHHHHhccCCCCceEEEEecCC
Confidence 4679999999999999999999999999999887532110 00000000 1135889999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccCCCC--
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGTPNI-- 239 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~~~~-- 239 (479)
|.+.+.++++ ++|+|||+|+..... ..++ ....+++|+.|+.+++++|++.+ ++ +|||+||.++|+....
T Consensus 67 d~~~~~~~~~--~~d~ViH~A~~~~~~--~~~~--~~~~~~~Nv~gt~~ll~aa~~~~~~~-r~v~~SS~~~~~~~~~~~ 139 (351)
T PLN02650 67 VEGSFDDAIR--GCTGVFHVATPMDFE--SKDP--ENEVIKPTVNGMLSIMKACAKAKTVR-RIVFTSSAGTVNVEEHQK 139 (351)
T ss_pred ChhhHHHHHh--CCCEEEEeCCCCCCC--CCCc--hhhhhhHHHHHHHHHHHHHHhcCCce-EEEEecchhhcccCCCCC
Confidence 9999999998 799999999864321 1122 23567899999999999999877 55 9999999877764321
Q ss_pred C-CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCC
Q 011707 240 D-IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318 (479)
Q Consensus 240 ~-~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~ 318 (479)
+ ++|+.+.. .+....+..+.+.|+.||.++|.+++.+++++|++++++||++||||+.....
T Consensus 140 ~~~~E~~~~~-----~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~Gp~~~~~~------------ 202 (351)
T PLN02650 140 PVYDEDCWSD-----LDFCRRKKMTGWMYFVSKTLAEKAAWKYAAENGLDFISIIPTLVVGPFISTSM------------ 202 (351)
T ss_pred CccCcccCCc-----hhhhhccccccchHHHHHHHHHHHHHHHHHHcCCeEEEECCCceECCCCCCCC------------
Confidence 2 24432110 00000122345689999999999999999999999999999999999864210
Q ss_pred CcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhhh
Q 011707 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEK 398 (479)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~~ 398 (479)
...++. .+. ...++.. .++. ...++|+||+|+|++++.+++++...+ +|++++..+|+.|+++.+.+.
T Consensus 203 --~~~~~~-~~~-~~~~~~~-~~~~-~~~r~~v~V~Dva~a~~~~l~~~~~~~---~~i~~~~~~s~~el~~~i~~~--- 270 (351)
T PLN02650 203 --PPSLIT-ALS-LITGNEA-HYSI-IKQGQFVHLDDLCNAHIFLFEHPAAEG---RYICSSHDATIHDLAKMLREK--- 270 (351)
T ss_pred --CccHHH-HHH-HhcCCcc-ccCc-CCCcceeeHHHHHHHHHHHhcCcCcCc---eEEecCCCcCHHHHHHHHHHh---
Confidence 011111 111 2233322 1222 234799999999999999998754433 686665779999999999997
Q ss_pred cCC-cceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHhc
Q 011707 399 LGL-DVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFK 453 (479)
Q Consensus 399 ~g~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~~ 453 (479)
++. ..+... +.. ......+..|++++++|||+|+++++++++++++|++...
T Consensus 271 ~~~~~~~~~~-~~~--~~~~~~~~~d~~k~~~lG~~p~~~l~egl~~~i~~~~~~~ 323 (351)
T PLN02650 271 YPEYNIPARF-PGI--DEDLKSVEFSSKKLTDLGFTFKYSLEDMFDGAIETCREKG 323 (351)
T ss_pred CcccCCCCCC-CCc--CcccccccCChHHHHHhCCCCCCCHHHHHHHHHHHHHHcC
Confidence 431 111111 111 1122345578999888999999999999999999998644
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-37 Score=299.92 Aligned_cols=303 Identities=25% Similarity=0.306 Sum_probs=238.7
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFL 167 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~ 167 (479)
+|||||||||||++|+++|+++|++|+++++........ . .++.++.+|++|.+.+
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~-----------------------~-~~~~~~~~d~~~~~~~ 57 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAAGHDVRGLDRLRDGLDPL-----------------------L-SGVEFVVLDLTDRDLV 57 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhCCCeEEEEeCCCcccccc-----------------------c-cccceeeecccchHHH
Confidence 599999999999999999999999999999865432110 0 3678899999999888
Q ss_pred HHHhhhcCC-CEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCC-CC-CCcCC
Q 011707 168 SESFKSFEP-DAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTP-NI-DIEEG 244 (479)
Q Consensus 168 ~~~~~~~~~-D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~-~~-~~~e~ 244 (479)
.++++ .. |+|||+|+.........+ ++...+.+|+.|+.+++++|++.+++ +|||.||.++|+.. .. +..|+
T Consensus 58 ~~~~~--~~~d~vih~aa~~~~~~~~~~--~~~~~~~~nv~gt~~ll~aa~~~~~~-~~v~~ss~~~~~~~~~~~~~~E~ 132 (314)
T COG0451 58 DELAK--GVPDAVIHLAAQSSVPDSNAS--DPAEFLDVNVDGTLNLLEAARAAGVK-RFVFASSVSVVYGDPPPLPIDED 132 (314)
T ss_pred HHHHh--cCCCEEEEccccCchhhhhhh--CHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCCCceECCCCCCCCcccc
Confidence 88887 55 999999998664443322 22346789999999999999998887 99998887877754 21 34443
Q ss_pred ceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccch
Q 011707 245 YITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~ 324 (479)
. .+..|.+.|+.+|.++|.+++.+.+.+|++++++||++||||++.+.. ...+
T Consensus 133 ~-------------~~~~p~~~Yg~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~--------------~~~~ 185 (314)
T COG0451 133 L-------------GPPRPLNPYGVSKLAAEQLLRAYARLYGLPVVILRPFNVYGPGDKPDL--------------SSGV 185 (314)
T ss_pred c-------------CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeeeeeeCCCCCCCC--------------CcCc
Confidence 1 244555699999999999999999888999999999999999976531 1134
Q ss_pred HHHHHHHHhcCCC-eEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-C-CcCHHHHHHHHHHHhhhcCC
Q 011707 325 LNRFCVQAAVGHP-LTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-E-QFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 325 ~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~-~~s~~el~~~i~~~~~~~g~ 401 (479)
+..++.++..+.+ +.+.+++...++++|++|++++++.+++++... +||+++ . ..++.|+++.+.+. +|.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~----~~ni~~~~~~~~~~e~~~~~~~~---~~~ 258 (314)
T COG0451 186 VSAFIRQLLKGEPIIVIGGDGSQTRDFVYVDDVADALLLALENPDGG----VFNIGSGTAEITVRELAEAVAEA---VGS 258 (314)
T ss_pred HHHHHHHHHhCCCcceEeCCCceeEeeEeHHHHHHHHHHHHhCCCCc----EEEeCCCCCcEEHHHHHHHHHHH---hCC
Confidence 5566777777876 666678888899999999999999999986654 899999 4 79999999999998 777
Q ss_pred cce-eeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhc
Q 011707 402 DVK-TISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFK 453 (479)
Q Consensus 402 ~~~-~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~ 453 (479)
... +...+............+|+.+++. |||.|++++++++..+++|+..+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~p~~~~~~~i~~~~~~~~~~~ 312 (314)
T COG0451 259 KAPLIVYIPLGRRGDLREGKLLDISKARAALGWEPKVSLEEGLADTLEWLLKKL 312 (314)
T ss_pred CCcceeecCCCCCCcccccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Confidence 655 3433321233444556789999976 999999999999999999987654
|
|
| >TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-37 Score=300.24 Aligned_cols=298 Identities=21% Similarity=0.246 Sum_probs=224.5
Q ss_pred EEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHH
Q 011707 89 VMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFL 167 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~ 167 (479)
|||||||||||+++++.|+++|+ +|+++++..+.. .+..+ ....+.+|+.+.+.+
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~~~~~~---------------------~~~~~---~~~~~~~d~~~~~~~ 56 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDNLRDGH---------------------KFLNL---ADLVIADYIDKEDFL 56 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEecCCCch---------------------hhhhh---hheeeeccCcchhHH
Confidence 69999999999999999999997 788887643210 00000 113467888888877
Q ss_pred HHHhhh--cCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCc
Q 011707 168 SESFKS--FEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGY 245 (479)
Q Consensus 168 ~~~~~~--~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~ 245 (479)
+.+.+. .++|+|||+|+..... . .+....+++|+.|+.+++++|++.+ .+|||+||.++|+....+..|+.
T Consensus 57 ~~~~~~~~~~~D~vvh~A~~~~~~--~---~~~~~~~~~n~~~~~~ll~~~~~~~--~~~v~~SS~~vy~~~~~~~~e~~ 129 (314)
T TIGR02197 57 DRLEKGAFGKIEAIFHQGACSDTT--E---TDGEYMMENNYQYSKRLLDWCAEKG--IPFIYASSAATYGDGEAGFREGR 129 (314)
T ss_pred HHHHhhccCCCCEEEECccccCcc--c---cchHHHHHHHHHHHHHHHHHHHHhC--CcEEEEccHHhcCCCCCCccccc
Confidence 776641 3799999999964322 1 2235578899999999999999887 37999999999997654444431
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH--hCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA--WGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~--~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
.+..|.+.|+.+|..+|.+++.+... .+++++++||++||||+.... +-...
T Consensus 130 -------------~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~lR~~~vyG~~~~~~-------------~~~~~ 183 (314)
T TIGR02197 130 -------------ELERPLNVYGYSKFLFDQYVRRRVLPEALSAQVVGLRYFNVYGPREYHK-------------GKMAS 183 (314)
T ss_pred -------------CcCCCCCHHHHHHHHHHHHHHHHhHhhccCCceEEEEEeeccCCCCCCC-------------CCccc
Confidence 12246789999999999999875432 367999999999999985421 11134
Q ss_pred hHHHHHHHHhcCCCeEEe------cCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHh
Q 011707 324 ALNRFCVQAAVGHPLTVY------GKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAG 396 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~ 396 (479)
++..++..+..++++.++ +++++.++|+|++|++++++.++.. . .++ +||+++ +++|+.|+++.+.+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~D~a~~i~~~~~~-~-~~~--~yni~~~~~~s~~e~~~~i~~~- 258 (314)
T TIGR02197 184 VAFHLFNQIKAGGNVKLFKSSEGFKDGEQLRDFVYVKDVVDVNLWLLEN-G-VSG--IFNLGTGRARSFNDLADAVFKA- 258 (314)
T ss_pred HHHHHHHHHhcCCCeEEecCccccCCCCceeeeEEHHHHHHHHHHHHhc-c-cCc--eEEcCCCCCccHHHHHHHHHHH-
Confidence 566778888888877765 3567789999999999999999987 2 333 999999 689999999999998
Q ss_pred hhcCCcceeeecCCCCc--ccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHH
Q 011707 397 EKLGLDVKTISVPNPRV--EAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAI 450 (479)
Q Consensus 397 ~~~g~~~~~~~~~~~~~--~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~ 450 (479)
+|.+.++...+.+.. ........+|++|+++ |||+|+++++++++++++|+.
T Consensus 259 --~g~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~p~~~l~~~l~~~~~~~~ 313 (314)
T TIGR02197 259 --LGKDEKIEYIPMPEALRGKYQYFTQADITKLRAAGYYGPFTTLEEGVKDYVQWLL 313 (314)
T ss_pred --hCCCCcceeccCccccccccccccccchHHHHHhcCCCCcccHHHHHHHHHHHHh
Confidence 776654444433321 1222345689999987 999999999999999999974
|
This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370). |
| >KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-37 Score=287.56 Aligned_cols=308 Identities=18% Similarity=0.181 Sum_probs=227.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+++|+||||+||||+||+++||++||.|++..|....... .+.+.++.. ...++..+.+||+|+
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~rGY~V~gtVR~~~~~k~--------------~~~L~~l~~-a~~~l~l~~aDL~d~ 69 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSRGYTVRGTVRDPEDEKK--------------TEHLRKLEG-AKERLKLFKADLLDE 69 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhCCCEEEEEEcCcchhhh--------------HHHHHhccc-CcccceEEecccccc
Confidence 57899999999999999999999999999999987553111 011222221 234699999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccCC-C----
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGTP-N---- 238 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~~-~---- 238 (479)
+++.++++ ++|.|||+|..+.+.... + ..++++.++.|+.|+|++|++.. ++ |||++||....... .
T Consensus 70 ~sf~~ai~--gcdgVfH~Asp~~~~~~~--~--e~~li~pav~Gt~nVL~ac~~~~sVk-rvV~TSS~aAv~~~~~~~~~ 142 (327)
T KOG1502|consen 70 GSFDKAID--GCDGVFHTASPVDFDLED--P--EKELIDPAVKGTKNVLEACKKTKSVK-RVVYTSSTAAVRYNGPNIGE 142 (327)
T ss_pred chHHHHHh--CCCEEEEeCccCCCCCCC--c--HHhhhhHHHHHHHHHHHHHhccCCcc-eEEEeccHHHhccCCcCCCC
Confidence 99999999 899999999876543322 1 13578999999999999999988 66 99999995443322 1
Q ss_pred -CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCC
Q 011707 239 -IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDY 317 (479)
Q Consensus 239 -~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~ 317 (479)
..++|+.|...+. .......|..||..+|+.++.++++.|++.+.+.|+.|+||...++-
T Consensus 143 ~~vvdE~~wsd~~~--------~~~~~~~Y~~sK~lAEkaAw~fa~e~~~~lv~inP~lV~GP~l~~~l----------- 203 (327)
T KOG1502|consen 143 NSVVDEESWSDLDF--------CRCKKLWYALSKTLAEKAAWEFAKENGLDLVTINPGLVFGPGLQPSL----------- 203 (327)
T ss_pred CcccccccCCcHHH--------HHhhHHHHHHHHHHHHHHHHHHHHhCCccEEEecCCceECCCccccc-----------
Confidence 2456665532211 11223789999999999999999999999999999999999876531
Q ss_pred CCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhh
Q 011707 318 DGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGE 397 (479)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~ 397 (479)
......+...++|..- .+. +....||||+|+|.|++.+++++...| .|.+.++..++.|+++.+.+.++
T Consensus 204 -----~~s~~~~l~~i~G~~~-~~~--n~~~~~VdVrDVA~AHv~a~E~~~a~G---Ryic~~~~~~~~ei~~~l~~~~P 272 (327)
T KOG1502|consen 204 -----NSSLNALLKLIKGLAE-TYP--NFWLAFVDVRDVALAHVLALEKPSAKG---RYICVGEVVSIKEIADILRELFP 272 (327)
T ss_pred -----chhHHHHHHHHhcccc-cCC--CCceeeEeHHHHHHHHHHHHcCcccCc---eEEEecCcccHHHHHHHHHHhCC
Confidence 2234555666676422 222 233459999999999999999999987 59988877779999999999844
Q ss_pred hcCCcceeeecCCCCc---ccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHH
Q 011707 398 KLGLDVKTISVPNPRV---EAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 398 ~~g~~~~~~~~~~~~~---~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
.+. +|.... ......+.++++|+++||+.-.++++|++.+++++++.
T Consensus 273 ~~~-------ip~~~~~~~~~~~~~~~~~~~k~k~lg~~~~~~l~e~~~dt~~sl~~ 322 (327)
T KOG1502|consen 273 DYP-------IPKKNAEEHEGFLTSFKVSSEKLKSLGGFKFRPLEETLSDTVESLRE 322 (327)
T ss_pred CCC-------CCCCCCccccccccccccccHHHHhcccceecChHHHHHHHHHHHHH
Confidence 333 222111 12223345799999998844355899999999998865
|
|
| >TIGR01179 galE UDP-glucose-4-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=295.05 Aligned_cols=314 Identities=25% Similarity=0.317 Sum_probs=230.7
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFL 167 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~ 167 (479)
+||||||||+||.+++++|+++|++|+++++..+.... ....... ..++..+.+|+++.+++
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~~V~~~~~~~~~~~~----------------~~~~~~~--~~~~~~~~~D~~~~~~~ 62 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGHEVVVLDNLSNGSPE----------------ALKRGER--ITRVTFVEGDLRDRELL 62 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCCeEEEEeCCCccchh----------------hhhhhcc--ccceEEEECCCCCHHHH
Confidence 58999999999999999999999999988764331100 0001100 12577889999999999
Q ss_pred HHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCce
Q 011707 168 SESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGYI 246 (479)
Q Consensus 168 ~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~~ 246 (479)
+++++..++|+||||||.........+ ....+..|+.++.+++++|.+.+.+ +||++||.++||.... +++|+
T Consensus 63 ~~~~~~~~~d~vv~~ag~~~~~~~~~~---~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~ss~~~~g~~~~~~~~e~-- 136 (328)
T TIGR01179 63 DRLFEEHKIDAVIHFAGLIAVGESVQD---PLKYYRNNVVNTLNLLEAMQQTGVK-KFIFSSSAAVYGEPSSIPISED-- 136 (328)
T ss_pred HHHHHhCCCcEEEECccccCcchhhcC---chhhhhhhHHHHHHHHHHHHhcCCC-EEEEecchhhcCCCCCCCcccc--
Confidence 999986679999999997543332222 3456789999999999999998877 9999999999986543 44454
Q ss_pred eecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH-hCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 247 TINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA-WGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
.+..+.+.|+.+|.++|.+++.++++ .+++++++||+++|||...... .. ...+ ...++
T Consensus 137 ------------~~~~~~~~y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~g~~~~~~~------~~-~~~~-~~~~~ 196 (328)
T TIGR01179 137 ------------SPLGPINPYGRSKLMSERILRDLSKADPGLSYVILRYFNVAGADPEGTI------GE-DPPG-ITHLI 196 (328)
T ss_pred ------------CCCCCCCchHHHHHHHHHHHHHHHHhccCCCEEEEecCcccCCCCCCcc------cc-CCcc-cchHH
Confidence 24456789999999999999999877 7999999999999999642110 00 0000 01233
Q ss_pred HHHHHHHh-cCCCeEEec------CCCceeccccHHHHHHHHHHHHhCCC--CCCCceEEEeCC-CCcCHHHHHHHHHHH
Q 011707 326 NRFCVQAA-VGHPLTVYG------KGGQTRGYLDIRDTVQCVELAIANPA--QPGEFRVFNQFT-EQFSVNQLAALVTKA 395 (479)
Q Consensus 326 ~~~~~~~~-~~~~~~~~~------~~~~~~~~v~v~Dva~a~~~~~~~~~--~~g~~~~~ni~~-~~~s~~el~~~i~~~ 395 (479)
..+..... ...++.+++ ++.+.++|||++|++++++.++.... ..+ ++||+++ +++|+.|+++.+.+.
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~D~a~~~~~~~~~~~~~~~~--~~~n~~~~~~~s~~ei~~~~~~~ 274 (328)
T TIGR01179 197 PYACQVAVGKRDKLTIFGTDYPTPDGTCVRDYIHVMDLADAHLAALEYLLNGGES--HVYNLGYGQGFSVLEVIEAFKKV 274 (328)
T ss_pred HHHHHHHHhCCCCeEEeCCcccCCCCceEEeeeeHHHHHHHHHHHHhhhhcCCCc--ceEEcCCCCcccHHHHHHHHHHH
Confidence 33443333 234454443 45677899999999999999997632 233 4999988 689999999999998
Q ss_pred hhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCccccc-HHHHHHHHHHHHHHh
Q 011707 396 GEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHIL-SDSLLDSLLNFAIQF 452 (479)
Q Consensus 396 ~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~-~~~~~~~~~~~~~~~ 452 (479)
+|.+.++...+.... ....+.+|++++++ |||+|+++ ++++++++++|+.++
T Consensus 275 ---~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~lg~~p~~~~l~~~~~~~~~~~~~~ 328 (328)
T TIGR01179 275 ---SGVDFPVELAPRRPG--DPASLVADASKIRRELGWQPKYTDLEIIIKTAWRWESRN 328 (328)
T ss_pred ---hCCCcceEeCCCCCc--cccchhcchHHHHHHhCCCCCcchHHHHHHHHHHHHhcC
Confidence 888777665554322 22344578999987 99999996 999999999998653
|
This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately. |
| >PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=291.71 Aligned_cols=256 Identities=22% Similarity=0.228 Sum_probs=198.6
Q ss_pred EEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHH
Q 011707 90 MIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFL 167 (479)
Q Consensus 90 LVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~ 167 (479)
|||||+||||++|+++|+++| ++|+++|+....... ..... .....++.+|++|.+++
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~------------------~~~~~--~~~~~~~~~Di~d~~~l 60 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFL------------------KDLQK--SGVKEYIQGDITDPESL 60 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccc------------------hhhhc--ccceeEEEeccccHHHH
Confidence 799999999999999999999 799999976543210 00000 12334999999999999
Q ss_pred HHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCC--CCCcCCc
Q 011707 168 SESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN--IDIEEGY 245 (479)
Q Consensus 168 ~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~--~~~~e~~ 245 (479)
.++++ ++|+|||+|+...... ......++++|+.||+||+++|++.+++ +|||+||.++++... .++.+.
T Consensus 61 ~~a~~--g~d~V~H~Aa~~~~~~----~~~~~~~~~vNV~GT~nvl~aa~~~~Vk-rlVytSS~~vv~~~~~~~~~~~~- 132 (280)
T PF01073_consen 61 EEALE--GVDVVFHTAAPVPPWG----DYPPEEYYKVNVDGTRNVLEAARKAGVK-RLVYTSSISVVFDNYKGDPIING- 132 (280)
T ss_pred HHHhc--CCceEEEeCccccccC----cccHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcCcceeEeccCCCCcccC-
Confidence 99999 8999999999765332 1123557899999999999999999998 999999999987622 122211
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHH---H--hCCceEEeecCeeecCCCCchhhhHhhhcccCCCCc
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCK---A--WGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~--~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~ 320 (479)
++..|++..+.+.|+.||+.+|++++++.. + ..+.+++|||+.||||++..
T Consensus 133 --------dE~~~~~~~~~~~Y~~SK~~AE~~V~~a~~~~~~~g~~l~t~~lRP~~IyGp~d~~---------------- 188 (280)
T PF01073_consen 133 --------DEDTPYPSSPLDPYAESKALAEKAVLEANGSELKNGGRLRTCALRPAGIYGPGDQR---------------- 188 (280)
T ss_pred --------CcCCcccccccCchHHHHHHHHHHHHhhcccccccccceeEEEEeccEEeCccccc----------------
Confidence 133445666789999999999999998775 2 24999999999999998642
Q ss_pred ccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC-------CCCCCceEEEeCC-CCcC-HHHHHHH
Q 011707 321 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP-------AQPGEFRVFNQFT-EQFS-VNQLAAL 391 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~-------~~~g~~~~~ni~~-~~~s-~~el~~~ 391 (479)
+...+...+..|......+++....+++||+|+|.|++++++.. ...|+ +|+|.+ +++. +.||...
T Consensus 189 ---~~~~~~~~~~~g~~~~~~g~~~~~~~~vyV~NvA~ahvlA~~~L~~~~~~~~~~G~--~y~itd~~p~~~~~~f~~~ 263 (280)
T PF01073_consen 189 ---LVPRLVKMVRSGLFLFQIGDGNNLFDFVYVENVAHAHVLAAQALLEPGKPERVAGQ--AYFITDGEPVPSFWDFMRP 263 (280)
T ss_pred ---ccchhhHHHHhcccceeecCCCceECcEeHHHHHHHHHHHHHHhccccccccCCCc--EEEEECCCccCcHHHHHHH
Confidence 33455555666666677788888899999999999999987642 23455 999999 6777 9999999
Q ss_pred HHHHhhhcCCccee
Q 011707 392 VTKAGEKLGLDVKT 405 (479)
Q Consensus 392 i~~~~~~~g~~~~~ 405 (479)
+.+. +|.+.+.
T Consensus 264 ~~~~---~G~~~~~ 274 (280)
T PF01073_consen 264 LWEA---LGYPPPK 274 (280)
T ss_pred HHHH---CCCCCCc
Confidence 9888 8887665
|
3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process |
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=298.74 Aligned_cols=287 Identities=18% Similarity=0.248 Sum_probs=215.5
Q ss_pred CCcEEEEE----cCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 85 KAKRVMII----GGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 85 ~~~~vLVt----GatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.+++|||| |||||||++|+++|+++|++|++++|........ . . .....+.++...+++++.+|
T Consensus 51 ~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~~l~R~~~~~~~~--~-----~-----~~~~~~~~l~~~~v~~v~~D 118 (378)
T PLN00016 51 EKKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVTLFTRGKEPSQKM--K-----K-----EPFSRFSELSSAGVKTVWGD 118 (378)
T ss_pred ccceEEEEeccCCCceeEhHHHHHHHHHCCCEEEEEecCCcchhhh--c-----c-----CchhhhhHhhhcCceEEEec
Confidence 45789999 9999999999999999999999999865321100 0 0 00001111222468899999
Q ss_pred cCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI- 239 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~- 239 (479)
+.| +.+++...++|+|||+++. ++.++.+++++|++.|++ +|||+||.++|+....
T Consensus 119 ~~d---~~~~~~~~~~d~Vi~~~~~-------------------~~~~~~~ll~aa~~~gvk-r~V~~SS~~vyg~~~~~ 175 (378)
T PLN00016 119 PAD---VKSKVAGAGFDVVYDNNGK-------------------DLDEVEPVADWAKSPGLK-QFLFCSSAGVYKKSDEP 175 (378)
T ss_pred HHH---HHhhhccCCccEEEeCCCC-------------------CHHHHHHHHHHHHHcCCC-EEEEEccHhhcCCCCCC
Confidence 877 5555544479999999752 345788999999999988 9999999999987543
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCC
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDG 319 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g 319 (479)
+..|+. +..+. . +|..+|.+++ +.+++++++||+++|||+...
T Consensus 176 p~~E~~--------------~~~p~---~-sK~~~E~~l~----~~~l~~~ilRp~~vyG~~~~~--------------- 218 (378)
T PLN00016 176 PHVEGD--------------AVKPK---A-GHLEVEAYLQ----KLGVNWTSFRPQYIYGPGNNK--------------- 218 (378)
T ss_pred CCCCCC--------------cCCCc---c-hHHHHHHHHH----HcCCCeEEEeceeEECCCCCC---------------
Confidence 334431 11222 2 7999998764 468999999999999997532
Q ss_pred cccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhh
Q 011707 320 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEK 398 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~ 398 (479)
.....++..+..++++.+++++.+.++|+|++|+|++++.+++++...++ +||+++ +.+|+.|+++.+.+.
T Consensus 219 ---~~~~~~~~~~~~~~~i~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~~~--~yni~~~~~~s~~el~~~i~~~--- 290 (378)
T PLN00016 219 ---DCEEWFFDRLVRGRPVPIPGSGIQLTQLGHVKDLASMFALVVGNPKAAGQ--IFNIVSDRAVTFDGMAKACAKA--- 290 (378)
T ss_pred ---chHHHHHHHHHcCCceeecCCCCeeeceecHHHHHHHHHHHhcCccccCC--EEEecCCCccCHHHHHHHHHHH---
Confidence 23455677788888888888889999999999999999999998655555 999998 679999999999998
Q ss_pred cCCcceeeecCCCCc--------ccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHH
Q 011707 399 LGLDVKTISVPNPRV--------EAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 399 ~g~~~~~~~~~~~~~--------~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
+|.+.++...+.... ......+.+|++|+++ |||+|+++++|+++++++|++.
T Consensus 291 ~g~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~d~~ka~~~LGw~p~~~l~egl~~~~~~~~~ 352 (378)
T PLN00016 291 AGFPEEIVHYDPKAVGFGAKKAFPFRDQHFFASPRKAKEELGWTPKFDLVEDLKDRYELYFG 352 (378)
T ss_pred hCCCCceeecCccccCccccccccccccccccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence 787765544322110 0112344579999987 9999999999999999999874
|
|
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=289.30 Aligned_cols=296 Identities=19% Similarity=0.178 Sum_probs=220.9
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+||||||+||||+++++.|+++|++|++++|...... .....++.++.+|++|.++
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~g~~V~~~~r~~~~~~-----------------------~~~~~~~~~~~~D~~~~~~ 57 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQGEEVRVLVRPTSDRR-----------------------NLEGLDVEIVEGDLRDPAS 57 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHCCCEEEEEEecCcccc-----------------------ccccCCceEEEeeCCCHHH
Confidence 47999999999999999999999999999998543110 0111368889999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCC--CCCcCC
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN--IDIEEG 244 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~--~~~~e~ 244 (479)
+.++++ ++|+|||+|+..... .. ++..++++|+.++.++++++++.+++ +||++||..+|+... .+.+|+
T Consensus 58 l~~~~~--~~d~vi~~a~~~~~~--~~---~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e~ 129 (328)
T TIGR03466 58 LRKAVA--GCRALFHVAADYRLW--AP---DPEEMYAANVEGTRNLLRAALEAGVE-RVVYTSSVATLGVRGDGTPADET 129 (328)
T ss_pred HHHHHh--CCCEEEEeceecccC--CC---CHHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEechhhcCcCCCCCCcCcc
Confidence 999998 799999999853211 11 23457889999999999999998887 999999999998532 244443
Q ss_pred ceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccch
Q 011707 245 YITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~ 324 (479)
. ...+....+.|+.+|.++|++++.++.+++++++++||+++|||+.... ..
T Consensus 130 ~-----------~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilR~~~~~G~~~~~~-----------------~~ 181 (328)
T TIGR03466 130 T-----------PSSLDDMIGHYKRSKFLAEQAALEMAAEKGLPVVIVNPSTPIGPRDIKP-----------------TP 181 (328)
T ss_pred C-----------CCCcccccChHHHHHHHHHHHHHHHHHhcCCCEEEEeCCccCCCCCCCC-----------------Cc
Confidence 1 1112223568999999999999999888899999999999999975321 11
Q ss_pred HHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhhhcCCcce
Q 011707 325 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVK 404 (479)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~~~g~~~~ 404 (479)
...++.....++.. .+. +...+|+|++|+|++++.++++.. .++ .||++++.+|+.|+++.+.+. +|.+.+
T Consensus 182 ~~~~~~~~~~~~~~-~~~--~~~~~~i~v~D~a~a~~~~~~~~~-~~~--~~~~~~~~~s~~e~~~~i~~~---~g~~~~ 252 (328)
T TIGR03466 182 TGRIIVDFLNGKMP-AYV--DTGLNLVHVDDVAEGHLLALERGR-IGE--RYILGGENLTLKQILDKLAEI---TGRPAP 252 (328)
T ss_pred HHHHHHHHHcCCCc-eee--CCCcceEEHHHHHHHHHHHHhCCC-CCc--eEEecCCCcCHHHHHHHHHHH---hCCCCC
Confidence 12333444444322 222 223689999999999999998754 344 899977789999999999998 776654
Q ss_pred eeecCCCC---------------ccc----------ccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHH
Q 011707 405 TISVPNPR---------------VEA----------EEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 405 ~~~~~~~~---------------~~~----------~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
....|.+. ... ....+.+|++|+++ |||+|+ +++++++++++|++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lg~~p~-~~~~~i~~~~~~~~~ 324 (328)
T TIGR03466 253 RVKLPRWLLLPVAWGAEALARLTGKEPRVTVDGVRMAKKKMFFSSAKAVRELGYRQR-PAREALRDAVEWFRA 324 (328)
T ss_pred CCcCCHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhccCCCChHHHHHHcCCCCc-CHHHHHHHHHHHHHH
Confidence 44333110 000 01345689999987 999996 999999999999876
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=285.50 Aligned_cols=273 Identities=22% Similarity=0.221 Sum_probs=211.2
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFL 167 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~ 167 (479)
+|||||||||||++++++|+++|++|++++|. .+|+.+.+.+
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~~v~~~~r~--------------------------------------~~d~~~~~~~ 42 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGRVVVALTSS--------------------------------------QLDLTDPEAL 42 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCCEEEEeCCc--------------------------------------ccCCCCHHHH
Confidence 48999999999999999999999999988651 4799999999
Q ss_pred HHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCce
Q 011707 168 SESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGYI 246 (479)
Q Consensus 168 ~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~~ 246 (479)
.++++..++|+|||+|+.........+ ....+++|+.++.+++++|++.+ . +||++||.++|+.... ++.|+
T Consensus 43 ~~~~~~~~~d~vi~~a~~~~~~~~~~~---~~~~~~~n~~~~~~l~~~~~~~~-~-~~v~~Ss~~vy~~~~~~~~~E~-- 115 (287)
T TIGR01214 43 ERLLRAIRPDAVVNTAAYTDVDGAESD---PEKAFAVNALAPQNLARAAARHG-A-RLVHISTDYVFDGEGKRPYRED-- 115 (287)
T ss_pred HHHHHhCCCCEEEECCccccccccccC---HHHHHHHHHHHHHHHHHHHHHcC-C-eEEEEeeeeeecCCCCCCCCCC--
Confidence 999986668999999997543322222 24467899999999999999887 3 8999999999986432 55554
Q ss_pred eecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHH
Q 011707 247 TINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~ 326 (479)
.+..+.+.|+.+|..+|++++.+ +++++++||++||||+.. ..++.
T Consensus 116 ------------~~~~~~~~Y~~~K~~~E~~~~~~----~~~~~ilR~~~v~G~~~~------------------~~~~~ 161 (287)
T TIGR01214 116 ------------DATNPLNVYGQSKLAGEQAIRAA----GPNALIVRTSWLYGGGGG------------------RNFVR 161 (287)
T ss_pred ------------CCCCCcchhhHHHHHHHHHHHHh----CCCeEEEEeeecccCCCC------------------CCHHH
Confidence 23456789999999999988654 789999999999999742 12355
Q ss_pred HHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCccee
Q 011707 327 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVKT 405 (479)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~~~ 405 (479)
.++..+..++++.+.++ +.++++|++|+|+++..+++.+...++ +||+++ +.+|+.|+++.+.+. +|.....
T Consensus 162 ~~~~~~~~~~~~~~~~~--~~~~~v~v~Dva~a~~~~~~~~~~~~~--~~ni~~~~~~s~~e~~~~i~~~---~~~~~~~ 234 (287)
T TIGR01214 162 TMLRLAGRGEELRVVDD--QIGSPTYAKDLARVIAALLQRLARARG--VYHLANSGQCSWYEFAQAIFEE---AGADGLL 234 (287)
T ss_pred HHHHHhhcCCCceEecC--CCcCCcCHHHHHHHHHHHHhhccCCCC--eEEEECCCCcCHHHHHHHHHHH---hCccccc
Confidence 66777777777777664 568999999999999999987644454 999998 689999999999998 6654321
Q ss_pred ------eecCC---CCcccccccccCCchHHHH-cCCcccccHHHHHHHHHH
Q 011707 406 ------ISVPN---PRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLN 447 (479)
Q Consensus 406 ------~~~~~---~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~ 447 (479)
..... +........+.+|++|+++ ||| +.++++++++++++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~lg~-~~~~~~~~l~~~~~ 285 (287)
T TIGR01214 235 LHPQEVKPISSKEYPRPARRPAYSVLDNTKLVKTLGT-PLPHWREALRAYLQ 285 (287)
T ss_pred ccCceeEeecHHHcCCCCCCCCccccchHHHHHHcCC-CCccHHHHHHHHHh
Confidence 11111 1111122345699999988 999 45699999988765
|
This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc. |
| >TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=290.64 Aligned_cols=275 Identities=19% Similarity=0.189 Sum_probs=209.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
++|+||||||+||||++|+++|+++| ++|++++|...... +.... ....++.++.+|++
T Consensus 3 ~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~----------------~~~~~---~~~~~~~~v~~Dl~ 63 (324)
T TIGR03589 3 NNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQW----------------EMQQK---FPAPCLRFFIGDVR 63 (324)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHH----------------HHHHH---hCCCcEEEEEccCC
Confidence 57899999999999999999999986 78999887532100 00001 11246889999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIE 242 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~ 242 (479)
|.+.+.++++ ++|+|||+||....+....++ ..++++|+.|+.+++++|++.+++ +||++||..
T Consensus 64 d~~~l~~~~~--~iD~Vih~Ag~~~~~~~~~~~---~~~~~~Nv~g~~~ll~aa~~~~~~-~iV~~SS~~---------- 127 (324)
T TIGR03589 64 DKERLTRALR--GVDYVVHAAALKQVPAAEYNP---FECIRTNINGAQNVIDAAIDNGVK-RVVALSTDK---------- 127 (324)
T ss_pred CHHHHHHHHh--cCCEEEECcccCCCchhhcCH---HHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeCCC----------
Confidence 9999999998 799999999976543333333 457899999999999999998877 999999953
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHH---HhCCceEEeecCeeecCCCCchhhhHhhhcccCCCC
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCK---AWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDG 319 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~---~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g 319 (479)
+..|.+.|+.+|+++|.+++.++. .+|++++++|||+||||+.
T Consensus 128 -----------------~~~p~~~Y~~sK~~~E~l~~~~~~~~~~~gi~~~~lR~g~v~G~~~----------------- 173 (324)
T TIGR03589 128 -----------------AANPINLYGATKLASDKLFVAANNISGSKGTRFSVVRYGNVVGSRG----------------- 173 (324)
T ss_pred -----------------CCCCCCHHHHHHHHHHHHHHHHHhhccccCcEEEEEeecceeCCCC-----------------
Confidence 223467899999999999987653 4689999999999999963
Q ss_pred cccchHHHHHHHHhcCC-CeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhhh
Q 011707 320 VFGTALNRFCVQAAVGH-PLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEK 398 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~~ 398 (479)
.++..+...+..+. ++++. ++.+.++|+|++|++++++.++++.. .++ +|+..+..+++.|+++.+.+.
T Consensus 174 ---~~i~~~~~~~~~~~~~~~i~-~~~~~r~~i~v~D~a~a~~~al~~~~-~~~--~~~~~~~~~sv~el~~~i~~~--- 243 (324)
T TIGR03589 174 ---SVVPFFKSLKEEGVTELPIT-DPRMTRFWITLEQGVNFVLKSLERML-GGE--IFVPKIPSMKITDLAEAMAPE--- 243 (324)
T ss_pred ---CcHHHHHHHHHhCCCCeeeC-CCCceEeeEEHHHHHHHHHHHHhhCC-CCC--EEccCCCcEEHHHHHHHHHhh---
Confidence 24566666666675 56665 66888999999999999999998742 344 885333569999999999985
Q ss_pred cCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHH
Q 011707 399 LGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLD 443 (479)
Q Consensus 399 ~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~ 443 (479)
. ++...+...+ .......+|++++++ |||+|++++++++.
T Consensus 244 ~----~~~~~~~~~g-~~~~~~~~~~~~~~~~lg~~~~~~l~~~~~ 284 (324)
T TIGR03589 244 C----PHKIVGIRPG-EKLHEVMITEDDARHTYELGDYYAILPSIS 284 (324)
T ss_pred C----CeeEeCCCCC-chhHhhhcChhhhhhhcCCCCeEEEccccc
Confidence 3 2323332222 112334579999977 99999999988875
|
This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family. |
| >COG1089 Gmd GDP-D-mannose dehydratase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=260.60 Aligned_cols=315 Identities=21% Similarity=0.215 Sum_probs=256.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|++||||-||+-|++|++.|++.||+|+++.|+.+....... .+.......+.++.++.+||+|..
T Consensus 2 ~K~ALITGITGQDGsYLa~lLLekGY~VhGi~Rrss~~n~~ri-------------~L~~~~~~~~~~l~l~~gDLtD~~ 68 (345)
T COG1089 2 GKVALITGITGQDGSYLAELLLEKGYEVHGIKRRSSSFNTPRI-------------HLYEDPHLNDPRLHLHYGDLTDSS 68 (345)
T ss_pred CceEEEecccCCchHHHHHHHHhcCcEEEEEeeccccCCcccc-------------eeccccccCCceeEEEeccccchH
Confidence 6899999999999999999999999999999987654322110 011112223456899999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCC-cceEEEeeccccccCCCC-CCcC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ-ECHLVKLGTMGEYGTPNI-DIEE 243 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~-~~~~V~~SS~~v~g~~~~-~~~e 243 (479)
.+.++++...+|-|+|+||.+++..++.+| ..+.+++..|+.++|++.+-.|. +++|...||+..||.... |..|
T Consensus 69 ~l~r~l~~v~PdEIYNLaAQS~V~vSFe~P---~~T~~~~~iGtlrlLEaiR~~~~~~~rfYQAStSE~fG~v~~~pq~E 145 (345)
T COG1089 69 NLLRILEEVQPDEIYNLAAQSHVGVSFEQP---EYTADVDAIGTLRLLEAIRILGEKKTRFYQASTSELYGLVQEIPQKE 145 (345)
T ss_pred HHHHHHHhcCchhheeccccccccccccCc---ceeeeechhHHHHHHHHHHHhCCcccEEEecccHHhhcCcccCcccc
Confidence 999999999999999999999999999987 56778999999999999998875 579999999999997665 7777
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
+ +|..|.++|+++|..+-.+...|.+.+|+-++.=..+|--+|....... .+
T Consensus 146 ~--------------TPFyPrSPYAvAKlYa~W~tvNYResYgl~AcnGILFNHESP~Rge~FV--------------TR 197 (345)
T COG1089 146 T--------------TPFYPRSPYAVAKLYAYWITVNYRESYGLFACNGILFNHESPLRGETFV--------------TR 197 (345)
T ss_pred C--------------CCCCCCCHHHHHHHHHHheeeehHhhcCceeecceeecCCCCCCcccee--------------hH
Confidence 7 6889999999999999999999999999999888888888887654333 23
Q ss_pred hHHHHHHHHhcCCC-eEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCC
Q 011707 324 ALNRFCVQAAVGHP-LTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 324 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~ 401 (479)
-+..-+.++..|.. -...|+.+..|||-|..|.++++.++++++.+. .|+|++ +..|++|++++..+. .|.
T Consensus 198 KIt~ava~Ik~G~q~~l~lGNldAkRDWG~A~DYVe~mwlmLQq~~Pd----dyViATg~t~sVrefv~~Af~~---~g~ 270 (345)
T COG1089 198 KITRAVARIKLGLQDKLYLGNLDAKRDWGHAKDYVEAMWLMLQQEEPD----DYVIATGETHSVREFVELAFEM---VGI 270 (345)
T ss_pred HHHHHHHHHHccccceEEeccccccccccchHHHHHHHHHHHccCCCC----ceEEecCceeeHHHHHHHHHHH---cCc
Confidence 35556666777763 344688899999999999999999999987643 799998 679999999999987 775
Q ss_pred ccee-------------------eecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHH
Q 011707 402 DVKT-------------------ISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 402 ~~~~-------------------~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
.... ...|....+........|.+|+++ |||+|+++++|+++.|+++-..
T Consensus 271 ~l~w~g~g~~e~g~da~~G~~~V~idp~~fRPaEV~~Llgdp~KA~~~LGW~~~~~~~elv~~Mv~~dl~ 340 (345)
T COG1089 271 DLEWEGTGVDEKGVDAKTGKIIVEIDPRYFRPAEVDLLLGDPTKAKEKLGWRPEVSLEELVREMVEADLE 340 (345)
T ss_pred eEEEeeccccccccccccCceeEEECccccCchhhhhhcCCHHHHHHHcCCccccCHHHHHHHHHHHHHH
Confidence 5543 333444445555666799999986 9999999999999999997544
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=286.37 Aligned_cols=297 Identities=14% Similarity=0.127 Sum_probs=211.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-----CCCceeEE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-----TGKNIELY 157 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~v 157 (479)
..++|+||||||+||||++|+++|+++|++|+++.+..... +.+..+... ...++.++
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~~~~~-----------------~~l~~l~~~~~~~~~~~~~~~v 112 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDTQEDK-----------------EKLREMEMFGEMGRSNDGIWTV 112 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCCHHHH-----------------HHHHHHhhhccccccCCceEEE
Confidence 45689999999999999999999999999999877643210 001111000 01257889
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeecc--ccc
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTM--GEY 234 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~--~v~ 234 (479)
.+|++|.+++.++++ ++|.|||+|+.......... .....++|+.++.+++++|++. +++ +|||+||. .+|
T Consensus 113 ~~Dl~d~~~l~~~i~--~~d~V~hlA~~~~~~~~~~~---~~~~~~~nv~gt~~llea~~~~~~v~-r~V~~SS~~~~vy 186 (367)
T PLN02686 113 MANLTEPESLHEAFD--GCAGVFHTSAFVDPAGLSGY---TKSMAELEAKASENVIEACVRTESVR-KCVFTSSLLACVW 186 (367)
T ss_pred EcCCCCHHHHHHHHH--hccEEEecCeeecccccccc---cchhhhhhHHHHHHHHHHHHhcCCcc-EEEEeccHHHhcc
Confidence 999999999999998 79999999997643221111 1124578999999999999986 677 99999995 578
Q ss_pred cCC--CC---CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhH
Q 011707 235 GTP--NI---DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 235 g~~--~~---~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
|.. .. .+.|+.+.. ...+..+.+.|+.||.++|++++.+++++|++++++||++||||+.....
T Consensus 187 g~~~~~~~~~~i~E~~~~~--------~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~gl~~v~lRp~~vyGp~~~~~~--- 255 (367)
T PLN02686 187 RQNYPHDLPPVIDEESWSD--------ESFCRDNKLWYALGKLKAEKAAWRAARGKGLKLATICPALVTGPGFFRRN--- 255 (367)
T ss_pred cccCCCCCCcccCCCCCCC--------hhhcccccchHHHHHHHHHHHHHHHHHhcCceEEEEcCCceECCCCCCCC---
Confidence 742 11 233432110 01234466789999999999999999888999999999999999753210
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC--CCCCCceEEEeCC-CCcCHH
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP--AQPGEFRVFNQFT-EQFSVN 386 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~--~~~g~~~~~ni~~-~~~s~~ 386 (479)
...+..++.+. +.+++++. ++|+||+|++++++.+++.+ ...++ +| |++ +.+++.
T Consensus 256 ----------------~~~~~~~~~g~-~~~~g~g~--~~~v~V~Dva~A~~~al~~~~~~~~~~--~y-i~~g~~~s~~ 313 (367)
T PLN02686 256 ----------------STATIAYLKGA-QEMLADGL--LATADVERLAEAHVCVYEAMGNKTAFG--RY-ICFDHVVSRE 313 (367)
T ss_pred ----------------ChhHHHHhcCC-CccCCCCC--cCeEEHHHHHHHHHHHHhccCCCCCCC--cE-EEeCCCccHH
Confidence 01122344453 45666543 57999999999999999853 22333 78 555 789999
Q ss_pred HHHHHHHHHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHH
Q 011707 387 QLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSD 439 (479)
Q Consensus 387 el~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~ 439 (479)
|+++.+.+. +|.+......+.. .......+.+|++|+++ |||.|+-.++
T Consensus 314 e~~~~i~~~---~g~~~~~~~~~~~-~~~d~~~~~~d~~kl~~~l~~~~~~~~~ 363 (367)
T PLN02686 314 DEAEELARQ---IGLPINKIAGNSS-SDDTPARFELSNKKLSRLMSRTRRCCYD 363 (367)
T ss_pred HHHHHHHHH---cCCCCCcCCCchh-hcCCcccccccHHHHHHHHHHhhhcccc
Confidence 999999998 8877665444422 12345567799999987 9999975443
|
|
| >KOG1430 consensus C-3 sterol dehydrogenase/3-beta-hydroxysteroid dehydrogenase and related dehydrogenases [Lipid transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-34 Score=274.35 Aligned_cols=313 Identities=20% Similarity=0.225 Sum_probs=239.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
++.++|||||+||+|.||+++|++++ .+|+++|......... . ........+++++.+|++
T Consensus 3 ~~~~vlVtGG~GflG~hlv~~L~~~~~~~~irv~D~~~~~~~~~--------------~---e~~~~~~~~v~~~~~D~~ 65 (361)
T KOG1430|consen 3 KKLSVLVTGGSGFLGQHLVQALLENELKLEIRVVDKTPTQSNLP--------------A---ELTGFRSGRVTVILGDLL 65 (361)
T ss_pred cCCEEEEECCccHHHHHHHHHHHhcccccEEEEeccCccccccc--------------h---hhhcccCCceeEEecchh
Confidence 46799999999999999999999998 7999999865411000 0 000002368999999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIE 242 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~ 242 (479)
|...+..++. ++ .|+|||+.........++ +..+++|+.||.+++++|++.|++ ++||+||.+|......-+
T Consensus 66 ~~~~i~~a~~--~~-~Vvh~aa~~~~~~~~~~~---~~~~~vNV~gT~nvi~~c~~~~v~-~lIYtSs~~Vvf~g~~~~- 137 (361)
T KOG1430|consen 66 DANSISNAFQ--GA-VVVHCAASPVPDFVENDR---DLAMRVNVNGTLNVIEACKELGVK-RLIYTSSAYVVFGGEPII- 137 (361)
T ss_pred hhhhhhhhcc--Cc-eEEEeccccCccccccch---hhheeecchhHHHHHHHHHHhCCC-EEEEecCceEEeCCeecc-
Confidence 9999999999 78 888888865544433333 567899999999999999999998 999999999876554300
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
..++..|+|....+.|+.||+.+|++++..+...++.++++||..||||++.
T Consensus 138 ---------n~~E~~p~p~~~~d~Y~~sKa~aE~~Vl~an~~~~l~T~aLR~~~IYGpgd~------------------- 189 (361)
T KOG1430|consen 138 ---------NGDESLPYPLKHIDPYGESKALAEKLVLEANGSDDLYTCALRPPGIYGPGDK------------------- 189 (361)
T ss_pred ---------cCCCCCCCccccccccchHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCc-------------------
Confidence 1124445666677899999999999999887655799999999999999974
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhC-----CCCCCCceEEEeCC-CCcCHHHHHHHHHHHh
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN-----PAQPGEFRVFNQFT-EQFSVNQLAALVTKAG 396 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~-----~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~ 396 (479)
.++..++..+..|+.+...++++...+|+++.+++.|++.+... +...|+ +|+|.+ .++...++...+.+.
T Consensus 190 ~~~~~i~~~~~~g~~~f~~g~~~~~~~~~~~~Nva~ahilA~~aL~~~~~~~~Gq--~yfI~d~~p~~~~~~~~~l~~~- 266 (361)
T KOG1430|consen 190 RLLPKIVEALKNGGFLFKIGDGENLNDFTYGENVAWAHILAARALLDKSPSVNGQ--FYFITDDTPVRFFDFLSPLVKA- 266 (361)
T ss_pred cccHHHHHHHHccCceEEeeccccccceEEechhHHHHHHHHHHHHhcCCccCce--EEEEeCCCcchhhHHHHHHHHh-
Confidence 35677778888898888888888889999999999999987543 333455 999999 566666666677776
Q ss_pred hhcCCcce-eeecCCC-------------------C-------cccccccccCCchHHHH-cCCcccccHHHHHHHHHHH
Q 011707 397 EKLGLDVK-TISVPNP-------------------R-------VEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNF 448 (479)
Q Consensus 397 ~~~g~~~~-~~~~~~~-------------------~-------~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~ 448 (479)
+|...+ ....|.. . .........+++.|++. |||+|..++++.+.+++.|
T Consensus 267 --lg~~~~~~~~~p~~l~~~~~~l~e~~~~~l~p~~p~lt~~~v~~~~~~~~f~~~kA~~~lgY~P~~~~~e~~~~~~~~ 344 (361)
T KOG1430|consen 267 --LGYCLPSSIKLPLFLSYFLAYLLEIVYFLLRPYQPILTRFRVALLGVTRTFSIEKAKRELGYKPLVSLEEAIQRTIHW 344 (361)
T ss_pred --cCCCCCceeecchHHHHHHHHHHHHHHHhccCCCCCcChhheeeeccccccCHHHHHHhhCCCCcCCHHHHHHHHHHH
Confidence 787766 3333211 0 01112334589999977 9999999999999999998
Q ss_pred HHHhccc
Q 011707 449 AIQFKDR 455 (479)
Q Consensus 449 ~~~~~~~ 455 (479)
+..+.+.
T Consensus 345 ~~~~~~~ 351 (361)
T KOG1430|consen 345 VASESDS 351 (361)
T ss_pred Hhhhhhc
Confidence 8775553
|
|
| >PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-34 Score=269.16 Aligned_cols=235 Identities=28% Similarity=0.371 Sum_probs=195.9
Q ss_pred EEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHHH
Q 011707 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLS 168 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~~ 168 (479)
|||||||||||++|+++|+++|++|+.+.+....... ... ..++.++.+|+.|.+.++
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~~------------------~~~----~~~~~~~~~dl~~~~~~~ 58 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSESF------------------EEK----KLNVEFVIGDLTDKEQLE 58 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGHH------------------HHH----HTTEEEEESETTSHHHHH
T ss_pred EEEEccCCHHHHHHHHHHHHcCCcccccccccccccc------------------ccc----cceEEEEEeecccccccc
Confidence 7999999999999999999999999988776542110 000 027899999999999999
Q ss_pred HHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCcee
Q 011707 169 ESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGYIT 247 (479)
Q Consensus 169 ~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~~~ 247 (479)
++++...+|+|||+|+......... +....++.|+.++.+++++|++.+++ +||++||..+|+.... +++|+
T Consensus 59 ~~~~~~~~d~vi~~a~~~~~~~~~~---~~~~~~~~n~~~~~~ll~~~~~~~~~-~~i~~sS~~~y~~~~~~~~~e~--- 131 (236)
T PF01370_consen 59 KLLEKANIDVVIHLAAFSSNPESFE---DPEEIIEANVQGTRNLLEAAREAGVK-RFIFLSSASVYGDPDGEPIDED--- 131 (236)
T ss_dssp HHHHHHTESEEEEEBSSSSHHHHHH---SHHHHHHHHHHHHHHHHHHHHHHTTS-EEEEEEEGGGGTSSSSSSBETT---
T ss_pred ccccccCceEEEEeecccccccccc---cccccccccccccccccccccccccc-cccccccccccccccccccccc---
Confidence 9999777899999999754222222 23567889999999999999999986 9999999999998843 55665
Q ss_pred ecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHHH
Q 011707 248 INHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNR 327 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~ 327 (479)
.+..+.+.|+.+|..+|++++.+.++++++++++||++||||+ .+ .+....++..
T Consensus 132 -----------~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~~~R~~~vyG~~-~~-------------~~~~~~~~~~ 186 (236)
T PF01370_consen 132 -----------SPINPLSPYGASKRAAEELLRDYAKKYGLRVTILRPPNVYGPG-NP-------------NNNSSSFLPS 186 (236)
T ss_dssp -----------SGCCHSSHHHHHHHHHHHHHHHHHHHHTSEEEEEEESEEESTT-SS-------------SSSTSSHHHH
T ss_pred -----------ccccccccccccccccccccccccccccccccccccccccccc-cc-------------ccccccccch
Confidence 2446788999999999999999999999999999999999998 11 1122467889
Q ss_pred HHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeC
Q 011707 328 FCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQF 379 (479)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~ 379 (479)
++.++..++++.+++++++.++|+|++|+|++++.+++++...++ +|||+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~i~v~D~a~~~~~~~~~~~~~~~--~yNig 236 (236)
T PF01370_consen 187 LIRQALKGKPIKIPGDGSQVRDFIHVDDLAEAIVAALENPKAAGG--IYNIG 236 (236)
T ss_dssp HHHHHHTTSSEEEESTSSCEEEEEEHHHHHHHHHHHHHHSCTTTE--EEEES
T ss_pred hhHHhhcCCcccccCCCCCccceEEHHHHHHHHHHHHhCCCCCCC--EEEeC
Confidence 999999999999999999999999999999999999999875555 99986
|
The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B .... |
| >PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=275.68 Aligned_cols=276 Identities=23% Similarity=0.279 Sum_probs=200.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+||||||+|+||++|++.|.++|++|+++++. ..|++|.+.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~--------------------------------------~~dl~d~~~ 42 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRS--------------------------------------DLDLTDPEA 42 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTT--------------------------------------CS-TTSHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCch--------------------------------------hcCCCCHHH
Confidence 689999999999999999999999999987541 689999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGY 245 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~ 245 (479)
+.+.++..++|+||||||...+.....+| ...+.+|+.++.+++++|.+.| .++||+||..||+.... +..|+
T Consensus 43 ~~~~~~~~~pd~Vin~aa~~~~~~ce~~p---~~a~~iN~~~~~~la~~~~~~~--~~li~~STd~VFdG~~~~~y~E~- 116 (286)
T PF04321_consen 43 VAKLLEAFKPDVVINCAAYTNVDACEKNP---EEAYAINVDATKNLAEACKERG--ARLIHISTDYVFDGDKGGPYTED- 116 (286)
T ss_dssp HHHHHHHH--SEEEE------HHHHHHSH---HHHHHHHTHHHHHHHHHHHHCT---EEEEEEEGGGS-SSTSSSB-TT-
T ss_pred HHHHHHHhCCCeEeccceeecHHhhhhCh---hhhHHHhhHHHHHHHHHHHHcC--CcEEEeeccEEEcCCcccccccC-
Confidence 99999988899999999988777666665 5567899999999999999988 58999999999976543 67776
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
.+..|.+.||.+|+++|+.++... -++.|+|++.+||+.. ..++
T Consensus 117 -------------d~~~P~~~YG~~K~~~E~~v~~~~----~~~~IlR~~~~~g~~~-------------------~~~~ 160 (286)
T PF04321_consen 117 -------------DPPNPLNVYGRSKLEGEQAVRAAC----PNALILRTSWVYGPSG-------------------RNFL 160 (286)
T ss_dssp -------------S----SSHHHHHHHHHHHHHHHH-----SSEEEEEE-SEESSSS-------------------SSHH
T ss_pred -------------CCCCCCCHHHHHHHHHHHHHHHhc----CCEEEEecceecccCC-------------------Cchh
Confidence 355789999999999999987633 3799999999999943 2467
Q ss_pred HHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCC-CCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCcc
Q 011707 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP-GEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDV 403 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~-g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~ 403 (479)
..++..+..++.+.++. ++.++.+|++|+|++++.++++.... ....+||+++ +.+|+.|+++.+.+. +|.+.
T Consensus 161 ~~~~~~~~~~~~i~~~~--d~~~~p~~~~dlA~~i~~l~~~~~~~~~~~Giyh~~~~~~~S~~e~~~~i~~~---~~~~~ 235 (286)
T PF04321_consen 161 RWLLRRLRQGEPIKLFD--DQYRSPTYVDDLARVILELIEKNLSGASPWGIYHLSGPERVSRYEFAEAIAKI---LGLDP 235 (286)
T ss_dssp HHHHHHHHCTSEEEEES--SCEE--EEHHHHHHHHHHHHHHHHH-GGG-EEEE---BS-EEHHHHHHHHHHH---HTHCT
T ss_pred hhHHHHHhcCCeeEeeC--CceeCCEEHHHHHHHHHHHHHhcccccccceeEEEecCcccCHHHHHHHHHHH---hCCCC
Confidence 78888888999988876 46789999999999999999875430 0013999999 789999999999998 66555
Q ss_pred -eeeecCCC---CcccccccccCCchHHHH-cCCcccccHHHHHHHHHHH
Q 011707 404 -KTISVPNP---RVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNF 448 (479)
Q Consensus 404 -~~~~~~~~---~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~ 448 (479)
.+...+.. .......+..+|++|++. +|.++. +|+++++.+++-
T Consensus 236 ~~i~~~~~~~~~~~~~rp~~~~L~~~kl~~~~g~~~~-~~~~~l~~~~~~ 284 (286)
T PF04321_consen 236 ELIKPVSSSEFPRAAPRPRNTSLDCRKLKNLLGIKPP-PWREGLEELVKQ 284 (286)
T ss_dssp TEEEEESSTTSTTSSGS-SBE-B--HHHHHCTTS----BHHHHHHHHHHH
T ss_pred ceEEecccccCCCCCCCCCcccccHHHHHHccCCCCc-CHHHHHHHHHHH
Confidence 44443322 223334466799999998 899986 799999998764
|
1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. |
| >COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=258.79 Aligned_cols=272 Identities=20% Similarity=0.203 Sum_probs=223.8
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||++|++|..|++.|. .+++|+.+++. ..|++|++.
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~--------------------------------------~~Ditd~~~ 41 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRA--------------------------------------ELDITDPDA 41 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCc--------------------------------------cccccChHH
Confidence 349999999999999999998 67899988752 289999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCC-CCCcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN-IDIEEGY 245 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~-~~~~e~~ 245 (479)
+.+++++.++|+|||+|+.+.+...+.++ +..+.+|..|+.|++++|.+.| .++||+||-.||.... .+..|++
T Consensus 42 v~~~i~~~~PDvVIn~AAyt~vD~aE~~~---e~A~~vNa~~~~~lA~aa~~~g--a~lVhiSTDyVFDG~~~~~Y~E~D 116 (281)
T COG1091 42 VLEVIRETRPDVVINAAAYTAVDKAESEP---ELAFAVNATGAENLARAAAEVG--ARLVHISTDYVFDGEKGGPYKETD 116 (281)
T ss_pred HHHHHHhhCCCEEEECccccccccccCCH---HHHHHhHHHHHHHHHHHHHHhC--CeEEEeecceEecCCCCCCCCCCC
Confidence 99999988999999999999988887765 5678999999999999999999 5799999999997665 4788873
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
+..|.+.||.||+++|..++.+ +-+..|+|.+++||... .+++
T Consensus 117 --------------~~~P~nvYG~sKl~GE~~v~~~----~~~~~I~Rtswv~g~~g-------------------~nFv 159 (281)
T COG1091 117 --------------TPNPLNVYGRSKLAGEEAVRAA----GPRHLILRTSWVYGEYG-------------------NNFV 159 (281)
T ss_pred --------------CCCChhhhhHHHHHHHHHHHHh----CCCEEEEEeeeeecCCC-------------------CCHH
Confidence 5678999999999999988664 45689999999999863 3567
Q ss_pred HHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCcce
Q 011707 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVK 404 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~~ 404 (479)
..+++....|+++.+.. ++..+.+++.|+|+++..++......+ +||+++ +.+||.|+++.|.+. .+.+..
T Consensus 160 ~tml~la~~~~~l~vv~--Dq~gsPt~~~dlA~~i~~ll~~~~~~~---~yH~~~~g~~Swydfa~~I~~~---~~~~~~ 231 (281)
T COG1091 160 KTMLRLAKEGKELKVVD--DQYGSPTYTEDLADAILELLEKEKEGG---VYHLVNSGECSWYEFAKAIFEE---AGVDGE 231 (281)
T ss_pred HHHHHHhhcCCceEEEC--CeeeCCccHHHHHHHHHHHHhccccCc---EEEEeCCCcccHHHHHHHHHHH---hCCCcc
Confidence 78888888999988875 588899999999999999999876655 999999 779999999999998 554332
Q ss_pred ee---ecCC-CCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHH
Q 011707 405 TI---SVPN-PRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNF 448 (479)
Q Consensus 405 ~~---~~~~-~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~ 448 (479)
+. ..+. +.......+..+|+.|+++ +|++|. .|+++++.+++-
T Consensus 232 v~~~~~~~~~~~~a~RP~~S~L~~~k~~~~~g~~~~-~w~~~l~~~~~~ 279 (281)
T COG1091 232 VIEPIASAEYPTPAKRPANSSLDTKKLEKAFGLSLP-EWREALKALLDE 279 (281)
T ss_pred ccccccccccCccCCCCcccccchHHHHHHhCCCCc-cHHHHHHHHHhh
Confidence 22 2221 1112223344699999987 888877 699999888763
|
|
| >PRK05865 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-31 Score=285.69 Aligned_cols=270 Identities=19% Similarity=0.221 Sum_probs=197.0
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+||||||+||||++++++|+++|++|++++|..... + ..++.++.+|++|.++
T Consensus 1 MkILVTGATGfIGs~La~~Ll~~G~~Vv~l~R~~~~~----------------------~----~~~v~~v~gDL~D~~~ 54 (854)
T PRK05865 1 MRIAVTGASGVLGRGLTARLLSQGHEVVGIARHRPDS----------------------W----PSSADFIAADIRDATA 54 (854)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCchhh----------------------c----ccCceEEEeeCCCHHH
Confidence 5799999999999999999999999999998753210 0 1357889999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCce
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYI 246 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~~ 246 (479)
+.++++ ++|+|||||+.... .+++|+.|+.+++++|++.+++ +|||+||..
T Consensus 55 l~~al~--~vD~VVHlAa~~~~------------~~~vNv~GT~nLLeAa~~~gvk-r~V~iSS~~-------------- 105 (854)
T PRK05865 55 VESAMT--GADVVAHCAWVRGR------------NDHINIDGTANVLKAMAETGTG-RIVFTSSGH-------------- 105 (854)
T ss_pred HHHHHh--CCCEEEECCCcccc------------hHHHHHHHHHHHHHHHHHcCCC-eEEEECCcH--------------
Confidence 999998 79999999985321 3478999999999999999987 999999830
Q ss_pred eecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHH
Q 011707 247 TINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~ 326 (479)
|.++|+++. +++++++++||++||||+. .
T Consensus 106 ------------------------K~aaE~ll~----~~gl~~vILRp~~VYGP~~-----------------------~ 134 (854)
T PRK05865 106 ------------------------QPRVEQMLA----DCGLEWVAVRCALIFGRNV-----------------------D 134 (854)
T ss_pred ------------------------HHHHHHHHH----HcCCCEEEEEeceEeCCCh-----------------------H
Confidence 888888663 4699999999999999962 1
Q ss_pred HHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCccee
Q 011707 327 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVKT 405 (479)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~~~ 405 (479)
.++..+.. .++...+++...++|+|++|++++++.+++++...++ +|||++ +.+|+.|+++.+.+.....+.+...
T Consensus 135 ~~i~~ll~-~~v~~~G~~~~~~dfIhVdDVA~Ai~~aL~~~~~~gg--vyNIgsg~~~Si~EIae~l~~~~~~v~~~~~~ 211 (854)
T PRK05865 135 NWVQRLFA-LPVLPAGYADRVVQVVHSDDAQRLLVRALLDTVIDSG--PVNLAAPGELTFRRIAAALGRPMVPIGSPVLR 211 (854)
T ss_pred HHHHHHhc-CceeccCCCCceEeeeeHHHHHHHHHHHHhCCCcCCC--eEEEECCCcccHHHHHHHHhhhhccCCchhhh
Confidence 22333322 2222234445667999999999999999976544444 899998 6799999999988741111221111
Q ss_pred eecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcccCCcCCCCCcceec
Q 011707 406 ISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWR 468 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (479)
...+..........+.+|++|+++ |||+|+++++++++++++|++. +...+....+.-||
T Consensus 212 ~~~~~~~~~~~~~~~~~D~sKar~~LGw~P~~sLeeGL~dti~~~r~---ri~~~~~~~~~~~~ 272 (854)
T PRK05865 212 RVTSFAELELLHSAPLMDVTLLRDRWGFQPAWNAEECLEDFTLAVRG---RIGLGKRTFSLPWR 272 (854)
T ss_pred hccchhhhhcccCCccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHh---hccccccccccchh
Confidence 111100001111234589999987 9999999999999999998864 34433333355564
|
|
| >PLN02996 fatty acyl-CoA reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-32 Score=280.43 Aligned_cols=292 Identities=14% Similarity=0.098 Sum_probs=200.2
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCC---eEEEEecccccccccccCCCCCCccchhhhhhh-----hhcccCCCc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGY---EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR-----CWKSLTGKN 153 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~---~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~ 153 (479)
...++|+|||||||||||++|++.|++.+. +|+++.|..++....+.-...+... .+.+... .+......+
T Consensus 7 ~~~~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR~~~~~~~~~rl~~~~~~~-~~f~~~~~~~~~~~~~~~~~k 85 (491)
T PLN02996 7 QFLENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLRASDAKSATQRLHDEVIGK-DLFKVLREKLGENLNSLISEK 85 (491)
T ss_pred HHhCCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEeCCCCCCHHHHHHHHHhhc-hHHHHHHHhcchhhhhhhhcC
Confidence 356899999999999999999999998753 6788888654221110000000000 0011000 011111258
Q ss_pred eeEEEcccC-------ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceE
Q 011707 154 IELYIGDIC-------DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHL 225 (479)
Q Consensus 154 v~~v~~Dl~-------d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~ 225 (479)
++++.||++ +.+.++++++ ++|+|||+|+.++... + ....+++|+.|+.+++++|++. +.+ +|
T Consensus 86 v~~i~GDl~~~~LGLs~~~~~~~l~~--~vD~ViH~AA~v~~~~---~---~~~~~~~Nv~gt~~ll~~a~~~~~~k-~~ 156 (491)
T PLN02996 86 VTPVPGDISYDDLGVKDSNLREEMWK--EIDIVVNLAATTNFDE---R---YDVALGINTLGALNVLNFAKKCVKVK-ML 156 (491)
T ss_pred EEEEecccCCcCCCCChHHHHHHHHh--CCCEEEECccccCCcC---C---HHHHHHHHHHHHHHHHHHHHhcCCCC-eE
Confidence 999999998 4455677777 7999999999866432 2 3456789999999999999986 555 99
Q ss_pred EEeeccccccCCCCCCcCCceeecCCC---------------------------CCC-----------CCCCCCCCCchh
Q 011707 226 VKLGTMGEYGTPNIDIEEGYITINHNG---------------------------RTD-----------TLPYPKQASSFY 267 (479)
Q Consensus 226 V~~SS~~v~g~~~~~~~e~~~~~~~~~---------------------------~~~-----------~~~~~~~~~~~Y 267 (479)
||+||..|||.....+.|..++....- .++ +......+.+.|
T Consensus 157 V~vST~~vyG~~~~~i~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pn~Y 236 (491)
T PLN02996 157 LHVSTAYVCGEKSGLILEKPFHMGETLNGNRKLDINEEKKLVKEKLKELNEQDASEEEITQAMKDLGMERAKLHGWPNTY 236 (491)
T ss_pred EEEeeeEEecCCCceeeeecCCCcccccccccCChHHHHHHHHHHHHHHHhhcCCHHHHHHHhhhhchhHHHhCCCCCch
Confidence 999999999986555555544321100 000 000012345789
Q ss_pred hhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCce
Q 011707 268 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQT 347 (479)
Q Consensus 268 ~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (479)
+.||+++|+++..++ .+++++|+||++||||+..|. +.+++. . ..+..++..+..|....+++++++.
T Consensus 237 ~~TK~~aE~lv~~~~--~~lpv~i~RP~~V~G~~~~p~---~gwi~~-----~--~~~~~i~~~~~~g~~~~~~gdg~~~ 304 (491)
T PLN02996 237 VFTKAMGEMLLGNFK--ENLPLVIIRPTMITSTYKEPF---PGWIEG-----L--RTIDSVIVGYGKGKLTCFLADPNSV 304 (491)
T ss_pred HhhHHHHHHHHHHhc--CCCCEEEECCCEeccCCcCCC---CCcccc-----h--hhHHHHHHHhccceEeEEecCCCee
Confidence 999999999998765 389999999999999987652 111110 0 1234555666777777788999999
Q ss_pred eccccHHHHHHHHHHHHhCCC-CCCCceEEEeCCC---CcCHHHHHHHHHHH
Q 011707 348 RGYLDIRDTVQCVELAIANPA-QPGEFRVFNQFTE---QFSVNQLAALVTKA 395 (479)
Q Consensus 348 ~~~v~v~Dva~a~~~~~~~~~-~~g~~~~~ni~~~---~~s~~el~~~i~~~ 395 (479)
+|++||+|++++++.++.+.. ......+||++++ ++|+.|+++.+.+.
T Consensus 305 ~D~v~Vddvv~a~l~a~~~~~~~~~~~~vYNi~s~~~~~~s~~ei~~~~~~~ 356 (491)
T PLN02996 305 LDVIPADMVVNAMIVAMAAHAGGQGSEIIYHVGSSLKNPVKFSNLHDFAYRY 356 (491)
T ss_pred cceecccHHHHHHHHHHHHhhccCCCCcEEEecCCCCCcccHHHHHHHHHHH
Confidence 999999999999999987631 1111249999975 69999999999987
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=262.15 Aligned_cols=271 Identities=16% Similarity=0.231 Sum_probs=202.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||||||||++++++|+++|++|++++|..... .. +...+++++.+|++|+++
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~--------------------~~---l~~~~v~~v~~Dl~d~~~ 57 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKA--------------------SF---LKEWGAELVYGDLSLPET 57 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHh--------------------hh---HhhcCCEEEECCCCCHHH
Confidence 5899999999999999999999999999999864311 00 011368999999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCce
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYI 246 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~~ 246 (479)
+.++++ ++|+|||+++... .+ .....++|+.|+.+++++|++.|++ +|||+||.+...
T Consensus 58 l~~al~--g~d~Vi~~~~~~~-----~~---~~~~~~~~~~~~~~l~~aa~~~gvk-r~I~~Ss~~~~~----------- 115 (317)
T CHL00194 58 LPPSFK--GVTAIIDASTSRP-----SD---LYNAKQIDWDGKLALIEAAKAAKIK-RFIFFSILNAEQ----------- 115 (317)
T ss_pred HHHHHC--CCCEEEECCCCCC-----CC---ccchhhhhHHHHHHHHHHHHHcCCC-EEEEeccccccc-----------
Confidence 999999 8999999976321 11 1235678999999999999999998 999999854321
Q ss_pred eecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHH
Q 011707 247 TINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~ 326 (479)
.+...|..+|..+|++++ +++++++++||+.+|+.. +.
T Consensus 116 ---------------~~~~~~~~~K~~~e~~l~----~~~l~~tilRp~~~~~~~-----------------------~~ 153 (317)
T CHL00194 116 ---------------YPYIPLMKLKSDIEQKLK----KSGIPYTIFRLAGFFQGL-----------------------IS 153 (317)
T ss_pred ---------------cCCChHHHHHHHHHHHHH----HcCCCeEEEeecHHhhhh-----------------------hh
Confidence 113468899999998764 469999999999887541 11
Q ss_pred HHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCccee
Q 011707 327 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVKT 405 (479)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~~~ 405 (479)
.+...+..++++.+. .+.+.++|+|++|+|++++.+++++...++ +||+++ +.+|+.|+++.+.+. +|.+..+
T Consensus 154 ~~~~~~~~~~~~~~~-~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~--~~ni~g~~~~s~~el~~~~~~~---~g~~~~~ 227 (317)
T CHL00194 154 QYAIPILEKQPIWIT-NESTPISYIDTQDAAKFCLKSLSLPETKNK--TFPLVGPKSWNSSEIISLCEQL---SGQKAKI 227 (317)
T ss_pred hhhhhhccCCceEec-CCCCccCccCHHHHHHHHHHHhcCccccCc--EEEecCCCccCHHHHHHHHHHH---hCCCCeE
Confidence 222233445565554 346677999999999999999987666665 999998 679999999999998 8887777
Q ss_pred eecCCCCc-------------------------ccccccccCCchHHHH-cCCccc--ccHHHHHHHHHHHHH
Q 011707 406 ISVPNPRV-------------------------EAEEHYYNAKHTKLIE-LGLQPH--ILSDSLLDSLLNFAI 450 (479)
Q Consensus 406 ~~~~~~~~-------------------------~~~~~~~~~d~~k~~~-lG~~p~--~~~~~~~~~~~~~~~ 450 (479)
...|.+.. .........+.+.+++ ||+.|. .++++.++..+.-+.
T Consensus 228 ~~vp~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~ 300 (317)
T CHL00194 228 SRVPLFLLKLLRQITGFFEWTWNISDRLAFVEILNTSNNFSSSMAELYKIFKIDPNELISLEDYFQEYFERIL 300 (317)
T ss_pred EeCCHHHHHHHHHHHhhcccchhhHHHHHHHHHHhcCCCcCCCHHHHHHHhCCChhhhhhHHHHHHHHHHHHH
Confidence 76653210 0011122345667766 999995 488999888877543
|
|
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-31 Score=255.50 Aligned_cols=280 Identities=21% Similarity=0.221 Sum_probs=188.7
Q ss_pred EEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHHH
Q 011707 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLS 168 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~~ 168 (479)
||||||+||||+++++.|+++|++|++++|........ .... ..|+.. ..+.
T Consensus 1 vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~-----------------------~~~~----~~~~~~-~~~~ 52 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKDGHEVTILTRSPPAGANT-----------------------KWEG----YKPWAP-LAES 52 (292)
T ss_pred CEEEcccchhhHHHHHHHHHcCCEEEEEeCCCCCCCcc-----------------------ccee----eecccc-cchh
Confidence 69999999999999999999999999999865421000 0001 112222 3344
Q ss_pred HHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCc-ceEEEeeccccccCCCC-CCcCCce
Q 011707 169 ESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQE-CHLVKLGTMGEYGTPNI-DIEEGYI 246 (479)
Q Consensus 169 ~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~-~~~V~~SS~~v~g~~~~-~~~e~~~ 246 (479)
+.+. ++|+|||+||.......+ .......++++|+.++.+++++|++.+++ .+||++||.++||.... ++.|+.
T Consensus 53 ~~~~--~~D~Vvh~a~~~~~~~~~-~~~~~~~~~~~n~~~~~~l~~a~~~~~~~~~~~i~~S~~~~yg~~~~~~~~E~~- 128 (292)
T TIGR01777 53 EALE--GADAVINLAGEPIADKRW-TEERKQEIRDSRIDTTRALVEAIAAAEQKPKVFISASAVGYYGTSEDRVFTEED- 128 (292)
T ss_pred hhcC--CCCEEEECCCCCcccccC-CHHHHHHHHhcccHHHHHHHHHHHhcCCCceEEEEeeeEEEeCCCCCCCcCccc-
Confidence 5555 799999999964432111 11122346788999999999999999863 36777788888986542 444541
Q ss_pred eecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHH
Q 011707 247 TINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~ 326 (479)
+..+.+.|+..+...|..+..+ ++.+++++++||++||||++. .+.
T Consensus 129 -------------~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~ilR~~~v~G~~~~--------------------~~~ 174 (292)
T TIGR01777 129 -------------SPAGDDFLAELCRDWEEAAQAA-EDLGTRVVLLRTGIVLGPKGG--------------------ALA 174 (292)
T ss_pred -------------CCCCCChHHHHHHHHHHHhhhc-hhcCCceEEEeeeeEECCCcc--------------------hhH
Confidence 2233445666676777766543 446899999999999999631 122
Q ss_pred HHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCccee
Q 011707 327 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVKT 405 (479)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~~~ 405 (479)
.++........ ..++++++.++|+|++|+|+++..+++++...+ +||+++ +++|+.|+++.+.+. +|.+..+
T Consensus 175 ~~~~~~~~~~~-~~~g~~~~~~~~i~v~Dva~~i~~~l~~~~~~g---~~~~~~~~~~s~~di~~~i~~~---~g~~~~~ 247 (292)
T TIGR01777 175 KMLPPFRLGLG-GPLGSGRQWFSWIHIEDLVQLILFALENASISG---PVNATAPEPVRNKEFAKALARA---LHRPAFF 247 (292)
T ss_pred HHHHHHhcCcc-cccCCCCcccccEeHHHHHHHHHHHhcCcccCC---ceEecCCCccCHHHHHHHHHHH---hCCCCcC
Confidence 22221211111 124677889999999999999999998755433 899998 689999999999998 7765432
Q ss_pred eecCCCCc--------ccccccccCCchHHHHcCCcccc-cHHHHH
Q 011707 406 ISVPNPRV--------EAEEHYYNAKHTKLIELGLQPHI-LSDSLL 442 (479)
Q Consensus 406 ~~~~~~~~--------~~~~~~~~~d~~k~~~lG~~p~~-~~~~~~ 442 (479)
..|.+.. .......+.+++|++++||+|++ +++|++
T Consensus 248 -~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 292 (292)
T TIGR01777 248 -PVPAFVLRALLGEMADLLLKGQRVLPEKLLEAGFQFQYPDLDEAL 292 (292)
T ss_pred -cCCHHHHHHHhchhhHHHhCCcccccHHHHhcCCeeeCcChhhcC
Confidence 2332110 11123445788999999999999 587753
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >PLN02583 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.6e-30 Score=251.32 Aligned_cols=284 Identities=16% Similarity=0.125 Sum_probs=193.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+++|||||||||||++++++|+++|++|++++|...... ..+.+..+.. .+.++.++.+|++|.
T Consensus 5 ~~k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~~~~~~--------------~~~~~~~l~~-~~~~~~~~~~Dl~d~ 69 (297)
T PLN02583 5 SSKSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQKNGETE--------------IEKEIRGLSC-EEERLKVFDVDPLDY 69 (297)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcCchhhh--------------HHHHHHhccc-CCCceEEEEecCCCH
Confidence 3679999999999999999999999999999887422100 0000111110 124688999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccccC--CC---
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEYGT--PN--- 238 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~g~--~~--- 238 (479)
+++.+++. ++|.|+|.++..... ..++..++++|+.|+.+++++|.+. +++ +||++||.+.++. ..
T Consensus 70 ~~~~~~l~--~~d~v~~~~~~~~~~-----~~~~~~~~~~nv~gt~~ll~aa~~~~~v~-riV~~SS~~a~~~~~~~~~~ 141 (297)
T PLN02583 70 HSILDALK--GCSGLFCCFDPPSDY-----PSYDEKMVDVEVRAAHNVLEACAQTDTIE-KVVFTSSLTAVIWRDDNIST 141 (297)
T ss_pred HHHHHHHc--CCCEEEEeCccCCcc-----cccHHHHHHHHHHHHHHHHHHHHhcCCcc-EEEEecchHheecccccCCC
Confidence 99999998 899999987643211 1123567899999999999999886 466 9999999765431 11
Q ss_pred -CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCC
Q 011707 239 -IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDY 317 (479)
Q Consensus 239 -~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~ 317 (479)
.+++|+.+... .+...+...|+.||..+|++++.+++..|++++++||++||||+..+.
T Consensus 142 ~~~~~E~~~~~~--------~~~~~~~~~Y~~sK~~aE~~~~~~~~~~gi~~v~lrp~~v~Gp~~~~~------------ 201 (297)
T PLN02583 142 QKDVDERSWSDQ--------NFCRKFKLWHALAKTLSEKTAWALAMDRGVNMVSINAGLLMGPSLTQH------------ 201 (297)
T ss_pred CCCCCcccCCCH--------HHHhhcccHHHHHHHHHHHHHHHHHHHhCCcEEEEcCCcccCCCCCCc------------
Confidence 12333321000 001112237999999999999999888899999999999999975321
Q ss_pred CCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCc-CHHHHHHHHHHHh
Q 011707 318 DGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQF-SVNQLAALVTKAG 396 (479)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~-s~~el~~~i~~~~ 396 (479)
.. .+.+. ...+++ ..++||||+|+|++++.+++++...+ .|+++++.. .+.++++++.+.+
T Consensus 202 --------~~----~~~~~-~~~~~~--~~~~~v~V~Dva~a~~~al~~~~~~~---r~~~~~~~~~~~~~~~~~~~~~~ 263 (297)
T PLN02583 202 --------NP----YLKGA-AQMYEN--GVLVTVDVNFLVDAHIRAFEDVSSYG---RYLCFNHIVNTEEDAVKLAQMLS 263 (297)
T ss_pred --------hh----hhcCC-cccCcc--cCcceEEHHHHHHHHHHHhcCcccCC---cEEEecCCCccHHHHHHHHHHhC
Confidence 01 12222 122222 24679999999999999999766544 599888654 4678999999974
Q ss_pred hhcCCcceeeecCCCCcccccccccCCchHHHHcCCcc
Q 011707 397 EKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQP 434 (479)
Q Consensus 397 ~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p 434 (479)
+....+.+. .. .........++++|+++|||+.
T Consensus 264 p~~~~~~~~--~~---~~~~~~~~~~~~~k~~~l~~~~ 296 (297)
T PLN02583 264 PLIPSPPPY--EM---QGSEVYQQRIRNKKLNKLMEDF 296 (297)
T ss_pred CCCCCCCcc--cc---cCCCccccccChHHHHHhCccc
Confidence 332221110 10 0111234568999999999874
|
|
| >KOG1431 consensus GDP-L-fucose synthetase [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4e-30 Score=224.16 Aligned_cols=295 Identities=16% Similarity=0.155 Sum_probs=227.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|||||++|.+|++|++.+..+|. +-.++. ..-.+||++
T Consensus 1 s~kIlVtGg~GLVGsAi~~vv~~q~~~~e~wvf~-------------------------------------~skd~DLt~ 43 (315)
T KOG1431|consen 1 SKKILVTGGTGLVGSAIVKVVQEQGFDDENWVFI-------------------------------------GSKDADLTN 43 (315)
T ss_pred CceEEEecCCchHHHHHHHHHHhcCCCCcceEEe-------------------------------------ccccccccc
Confidence 47899999999999999999999976 222211 111589999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CC
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DI 241 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~ 241 (479)
.++.+++|+..++..|||.|+.++.-. ....+ ...+..|+.-.-|++..|.++|++ ++|++.|.++|..... |+
T Consensus 44 ~a~t~~lF~~ekPthVIhlAAmVGGlf~N~~yn---ldF~r~Nl~indNVlhsa~e~gv~-K~vsclStCIfPdkt~yPI 119 (315)
T KOG1431|consen 44 LADTRALFESEKPTHVIHLAAMVGGLFHNNTYN---LDFIRKNLQINDNVLHSAHEHGVK-KVVSCLSTCIFPDKTSYPI 119 (315)
T ss_pred hHHHHHHHhccCCceeeehHhhhcchhhcCCCc---hHHHhhcceechhHHHHHHHhchh-hhhhhcceeecCCCCCCCC
Confidence 999999999889999999999865322 22222 446788999999999999999998 8999888899987654 77
Q ss_pred cCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 242 EEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
+|+.+-.. .|....-.|+.+|.++.-..+.|..++|-.++.+-|.|+|||.++-.- .-
T Consensus 120 dEtmvh~g---------pphpsN~gYsyAKr~idv~n~aY~~qhg~~~tsviPtNvfGphDNfnp-------------e~ 177 (315)
T KOG1431|consen 120 DETMVHNG---------PPHPSNFGYSYAKRMIDVQNQAYRQQHGRDYTSVIPTNVFGPHDNFNP-------------EN 177 (315)
T ss_pred CHHHhccC---------CCCCCchHHHHHHHHHHHHHHHHHHHhCCceeeeccccccCCCCCCCc-------------cc
Confidence 77643211 122335679999988887779999999999999999999999986321 11
Q ss_pred cchHHHHHHHH----hcCC-CeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-C--CcCHHHHHHHHH
Q 011707 322 GTALNRFCVQA----AVGH-PLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-E--QFSVNQLAALVT 393 (479)
Q Consensus 322 ~~~~~~~~~~~----~~~~-~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~--~~s~~el~~~i~ 393 (479)
+.+++.++.++ ..|. ++.+||.|..+|.|+|++|+|++++.++.+-.... -.+++. + .+|++|+++++.
T Consensus 178 sHVlPali~r~h~ak~~gtd~~~VwGsG~PlRqFiys~DLA~l~i~vlr~Y~~vE---piils~ge~~EVtI~e~aeaV~ 254 (315)
T KOG1431|consen 178 SHVLPALIHRFHEAKRNGTDELTVWGSGSPLRQFIYSDDLADLFIWVLREYEGVE---PIILSVGESDEVTIREAAEAVV 254 (315)
T ss_pred ccchHHHHHHHHHHHhcCCceEEEecCCChHHHHhhHhHHHHHHHHHHHhhcCcc---ceEeccCccceeEHHHHHHHHH
Confidence 33445555444 3455 79999999999999999999999999998754433 456665 4 699999999999
Q ss_pred HHhhhcCCcceeeecCCCCcccccccccCCchHHHHcCCccccc-HHHHHHHHHHHHHH
Q 011707 394 KAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHIL-SDSLLDSLLNFAIQ 451 (479)
Q Consensus 394 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~-~~~~~~~~~~~~~~ 451 (479)
++ .+..-++.....+....+.. .+|++||+.|+|.|+.+ +++++...++|+..
T Consensus 255 ea---~~F~G~l~~DttK~DGq~kK--tasnsKL~sl~pd~~ft~l~~ai~~t~~Wy~~ 308 (315)
T KOG1431|consen 255 EA---VDFTGKLVWDTTKSDGQFKK--TASNSKLRSLLPDFKFTPLEQAISETVQWYLD 308 (315)
T ss_pred HH---hCCCceEEeeccCCCCCccc--ccchHHHHHhCCCcccChHHHHHHHHHHHHHH
Confidence 99 78777776655443222222 37999999999999995 99999999999764
|
|
| >PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.3e-30 Score=256.39 Aligned_cols=247 Identities=17% Similarity=0.157 Sum_probs=193.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..++++|||||||||||++++++|+++|++|++++|......... ...... ....+++++.+|++
T Consensus 57 ~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~R~~~~~~~~~--------------~~~~~~-~~~~~v~~v~~Dl~ 121 (390)
T PLN02657 57 EPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVAREKSGIRGKN--------------GKEDTK-KELPGAEVVFGDVT 121 (390)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEEechhhccccc--------------hhhHHh-hhcCCceEEEeeCC
Confidence 456889999999999999999999999999999998643211000 000000 01247889999999
Q ss_pred ChHHHHHHhhhc--CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCC
Q 011707 163 DFEFLSESFKSF--EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNID 240 (479)
Q Consensus 163 d~~~~~~~~~~~--~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~ 240 (479)
|++++.++++.. ++|+||||++..... . ...+++|+.++.+++++|++.|++ +||++||.++++
T Consensus 122 d~~~l~~~~~~~~~~~D~Vi~~aa~~~~~--~------~~~~~vn~~~~~~ll~aa~~~gv~-r~V~iSS~~v~~----- 187 (390)
T PLN02657 122 DADSLRKVLFSEGDPVDVVVSCLASRTGG--V------KDSWKIDYQATKNSLDAGREVGAK-HFVLLSAICVQK----- 187 (390)
T ss_pred CHHHHHHHHHHhCCCCcEEEECCccCCCC--C------ccchhhHHHHHHHHHHHHHHcCCC-EEEEEeeccccC-----
Confidence 999999999854 599999998842211 1 123578999999999999999987 999999987652
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCc
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~ 320 (479)
+...|..+|..+|+.+.. ...+++++|+||+.+||+.
T Consensus 188 ----------------------p~~~~~~sK~~~E~~l~~--~~~gl~~tIlRp~~~~~~~------------------- 224 (390)
T PLN02657 188 ----------------------PLLEFQRAKLKFEAELQA--LDSDFTYSIVRPTAFFKSL------------------- 224 (390)
T ss_pred ----------------------cchHHHHHHHHHHHHHHh--ccCCCCEEEEccHHHhccc-------------------
Confidence 245688999999998765 3469999999999999852
Q ss_pred ccchHHHHHHHHhcCCCeEEecCCCcee-ccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-C-CcCHHHHHHHHHHHhh
Q 011707 321 FGTALNRFCVQAAVGHPLTVYGKGGQTR-GYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-E-QFSVNQLAALVTKAGE 397 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~-~~s~~el~~~i~~~~~ 397 (479)
..++..+..|+++.++++++..+ ++||++|+|++++.++.++...++ +|||++ + .+|++|+++++.+.
T Consensus 225 -----~~~~~~~~~g~~~~~~GdG~~~~~~~I~v~DlA~~i~~~~~~~~~~~~--~~~Iggp~~~~S~~Eia~~l~~~-- 295 (390)
T PLN02657 225 -----GGQVEIVKDGGPYVMFGDGKLCACKPISEADLASFIADCVLDESKINK--VLPIGGPGKALTPLEQGEMLFRI-- 295 (390)
T ss_pred -----HHHHHhhccCCceEEecCCcccccCceeHHHHHHHHHHHHhCccccCC--EEEcCCCCcccCHHHHHHHHHHH--
Confidence 23455667788888888887654 679999999999999987665565 999997 4 69999999999998
Q ss_pred hcCCcceeeecCCC
Q 011707 398 KLGLDVKTISVPNP 411 (479)
Q Consensus 398 ~~g~~~~~~~~~~~ 411 (479)
+|.++++...|.+
T Consensus 296 -lG~~~~~~~vp~~ 308 (390)
T PLN02657 296 -LGKEPKFFKVPIQ 308 (390)
T ss_pred -hCCCCceEEcCHH
Confidence 8888887776644
|
|
| >PLN02778 3,5-epimerase/4-reductase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=245.50 Aligned_cols=270 Identities=14% Similarity=0.103 Sum_probs=189.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
..|+||||||+||||++|++.|+++|++|+.. .+|+.|.
T Consensus 8 ~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~~-----------------------------------------~~~~~~~ 46 (298)
T PLN02778 8 ATLKFLIYGKTGWIGGLLGKLCQEQGIDFHYG-----------------------------------------SGRLENR 46 (298)
T ss_pred CCCeEEEECCCCHHHHHHHHHHHhCCCEEEEe-----------------------------------------cCccCCH
Confidence 35789999999999999999999999998742 1345566
Q ss_pred HHHHHHhhhcCCCEEEEcccccCccc---ccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC--
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPY---SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-- 239 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~---~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-- 239 (479)
+.+...++..++|+|||+||..+... ...+| ...+++|+.|+.+++++|++.|+ +++++||.++|+....
T Consensus 47 ~~v~~~l~~~~~D~ViH~Aa~~~~~~~~~~~~~p---~~~~~~Nv~gt~~ll~aa~~~gv--~~v~~sS~~vy~~~~~~p 121 (298)
T PLN02778 47 ASLEADIDAVKPTHVFNAAGVTGRPNVDWCESHK---VETIRANVVGTLTLADVCRERGL--VLTNYATGCIFEYDDAHP 121 (298)
T ss_pred HHHHHHHHhcCCCEEEECCcccCCCCchhhhhCH---HHHHHHHHHHHHHHHHHHHHhCC--CEEEEecceEeCCCCCCC
Confidence 66777777668999999999865322 22333 55788999999999999999985 4666788788865321
Q ss_pred -----CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 240 -----DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 240 -----~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
++.|++ .+..+.+.|+.+|.++|.++..+++ ..++|++.++|++..
T Consensus 122 ~~~~~~~~Ee~-------------~p~~~~s~Yg~sK~~~E~~~~~y~~-----~~~lr~~~~~~~~~~----------- 172 (298)
T PLN02778 122 LGSGIGFKEED-------------TPNFTGSFYSKTKAMVEELLKNYEN-----VCTLRVRMPISSDLS----------- 172 (298)
T ss_pred cccCCCCCcCC-------------CCCCCCCchHHHHHHHHHHHHHhhc-----cEEeeecccCCcccc-----------
Confidence 233331 1223458899999999999987753 567888777776421
Q ss_pred cCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHH
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVT 393 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~ 393 (479)
....|+..++.++++...+ .+|+|++|++++++.++++.. ++ +||+++ +.+|+.|++++++
T Consensus 173 ---------~~~~fi~~~~~~~~~~~~~-----~s~~yv~D~v~al~~~l~~~~--~g--~yNigs~~~iS~~el~~~i~ 234 (298)
T PLN02778 173 ---------NPRNFITKITRYEKVVNIP-----NSMTILDELLPISIEMAKRNL--TG--IYNFTNPGVVSHNEILEMYR 234 (298)
T ss_pred ---------cHHHHHHHHHcCCCeeEcC-----CCCEEHHHHHHHHHHHHhCCC--CC--eEEeCCCCcccHHHHHHHHH
Confidence 1234677888887755543 379999999999999997533 23 999988 6899999999999
Q ss_pred HHhhhcCCccee---eecCC-CCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHH
Q 011707 394 KAGEKLGLDVKT---ISVPN-PRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 394 ~~~~~~g~~~~~---~~~~~-~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
+. +|...+. ...+. .....+.....+|++|++. ++=.+. ..+++++...+-.+.
T Consensus 235 ~~---~~~~~~~~~~~i~~~~~~~~~~~~~~~Ld~~k~~~~~~~~~~-~~~~~~~~~~~~~~~ 293 (298)
T PLN02778 235 DY---IDPSFTWKNFTLEEQAKVIVAPRSNNELDTTKLKREFPELLP-IKESLIKYVFEPNKK 293 (298)
T ss_pred HH---hCCCceeccccHHHHHHHHhCCCccccccHHHHHHhcccccc-hHHHHHHHHHHHHHh
Confidence 98 6654221 11111 0011222233689999987 543233 456777776665543
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=273.86 Aligned_cols=309 Identities=15% Similarity=0.147 Sum_probs=212.0
Q ss_pred cEEEEEcCCchhhHHHHHHHH--hCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLS--NKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll--~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
|+|||||||||||++|+++|+ ..|++|++++|...... +......+ ...+++++.+|++|+
T Consensus 1 m~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~--------------~~~~~~~~---~~~~v~~~~~Dl~~~ 63 (657)
T PRK07201 1 MRYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSR--------------LEALAAYW---GADRVVPLVGDLTEP 63 (657)
T ss_pred CeEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHH--------------HHHHHHhc---CCCcEEEEecccCCc
Confidence 589999999999999999999 57999999998532110 00000111 124789999999984
Q ss_pred ------HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCC
Q 011707 165 ------EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN 238 (479)
Q Consensus 165 ------~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~ 238 (479)
+.++++ + ++|+||||||....... .....++|+.|+.+++++|++.+++ +|||+||.++||...
T Consensus 64 ~~~~~~~~~~~l-~--~~D~Vih~Aa~~~~~~~------~~~~~~~nv~gt~~ll~~a~~~~~~-~~v~~SS~~v~g~~~ 133 (657)
T PRK07201 64 GLGLSEADIAEL-G--DIDHVVHLAAIYDLTAD------EEAQRAANVDGTRNVVELAERLQAA-TFHHVSSIAVAGDYE 133 (657)
T ss_pred cCCcCHHHHHHh-c--CCCEEEECceeecCCCC------HHHHHHHHhHHHHHHHHHHHhcCCC-eEEEEeccccccCcc
Confidence 445555 4 89999999997543322 1345689999999999999999887 999999999998765
Q ss_pred CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCC
Q 011707 239 IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318 (479)
Q Consensus 239 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~ 318 (479)
.+..|+.++ .+..+.+.|+.+|+++|++++. ..|++++++||++||||....... ...
T Consensus 134 ~~~~e~~~~-----------~~~~~~~~Y~~sK~~~E~~~~~---~~g~~~~ilRp~~v~G~~~~g~~~--------~~~ 191 (657)
T PRK07201 134 GVFREDDFD-----------EGQGLPTPYHRTKFEAEKLVRE---ECGLPWRVYRPAVVVGDSRTGEMD--------KID 191 (657)
T ss_pred Cccccccch-----------hhcCCCCchHHHHHHHHHHHHH---cCCCcEEEEcCCeeeecCCCCccc--------cCC
Confidence 444444221 1233457899999999999864 358999999999999986532110 000
Q ss_pred CcccchHHHHHHHHhc-CCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHh
Q 011707 319 GVFGTALNRFCVQAAV-GHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAG 396 (479)
Q Consensus 319 g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~ 396 (479)
+. .++..++..... ...+.+++.+...++++|++|+++++..+++.+...|+ +||+++ +++|+.|+++.+.+.
T Consensus 192 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vddva~ai~~~~~~~~~~g~--~~ni~~~~~~s~~el~~~i~~~- 266 (657)
T PRK07201 192 GP--YYFFKVLAKLAKLPSWLPMVGPDGGRTNIVPVDYVADALDHLMHKDGRDGQ--TFHLTDPKPQRVGDIYNAFARA- 266 (657)
T ss_pred cH--HHHHHHHHHhccCCcccccccCCCCeeeeeeHHHHHHHHHHHhcCcCCCCC--EEEeCCCCCCcHHHHHHHHHHH-
Confidence 00 112223333311 12234445556678999999999999999987655565 999998 789999999999998
Q ss_pred hhcCCcc---eeeecCCCCc----------------------------ccccccccCCchHHHH-c---CCcccccHHHH
Q 011707 397 EKLGLDV---KTISVPNPRV----------------------------EAEEHYYNAKHTKLIE-L---GLQPHILSDSL 441 (479)
Q Consensus 397 ~~~g~~~---~~~~~~~~~~----------------------------~~~~~~~~~d~~k~~~-l---G~~p~~~~~~~ 441 (479)
+|.+. .....|.... ........+|++++++ | |+... .+++.
T Consensus 267 --~g~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~f~~~~~~~~L~~~~~~~p-~~~~~ 343 (657)
T PRK07201 267 --AGAPPDARLFGFLPGFVAAPLLAALGPVRRLRNAVATQLGIPPEVLDFVNYPTTFDSRETRAALKGSGIEVP-RLASY 343 (657)
T ss_pred --hCCCccccccccCChHHHHHHhhhcchhhHHHHHHHHhcCCCHHHHHhccCCCeeccHHHHHHhccCCcCCC-ChHHH
Confidence 77665 3333332100 0111233578888866 6 43333 56788
Q ss_pred HHHHHHHHHHh
Q 011707 442 LDSLLNFAIQF 452 (479)
Q Consensus 442 ~~~~~~~~~~~ 452 (479)
+..+++|+..+
T Consensus 344 ~~~~~~~~~~~ 354 (657)
T PRK07201 344 APRLWDYWERH 354 (657)
T ss_pred HHHHHHHHHhc
Confidence 88888877654
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.1e-30 Score=239.86 Aligned_cols=251 Identities=25% Similarity=0.278 Sum_probs=183.9
Q ss_pred EEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhc-ccCCCce----eEEEcccC
Q 011707 89 VMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK-SLTGKNI----ELYIGDIC 162 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v----~~v~~Dl~ 162 (479)
||||||+|.||+.|+++|++.+ .+++++|+.+...... ...+. ...+.++ ..+.+|++
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l----------------~~~l~~~~~~~~v~~~~~~vigDvr 64 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYEL----------------ERELRSRFPDPKVRFEIVPVIGDVR 64 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHH----------------HHHCHHHC--TTCEEEEE--CTSCC
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHH----------------HHHHhhcccccCcccccCceeeccc
Confidence 7999999999999999999998 4799999976643322 22221 1112234 34589999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIE 242 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~ 242 (479)
|.+.+.++++.+++|+|||.||..+++..+.+| .+.+++|+.||.|++++|.+++++ +||++||...
T Consensus 65 d~~~l~~~~~~~~pdiVfHaAA~KhVpl~E~~p---~eav~tNv~GT~nv~~aa~~~~v~-~~v~ISTDKA--------- 131 (293)
T PF02719_consen 65 DKERLNRIFEEYKPDIVFHAAALKHVPLMEDNP---FEAVKTNVLGTQNVAEAAIEHGVE-RFVFISTDKA--------- 131 (293)
T ss_dssp HHHHHHHHTT--T-SEEEE------HHHHCCCH---HHHHHHHCHHHHHHHHHHHHTT-S-EEEEEEECGC---------
T ss_pred CHHHHHHHHhhcCCCEEEEChhcCCCChHHhCH---HHHHHHHHHHHHHHHHHHHHcCCC-EEEEcccccc---------
Confidence 999999999988999999999999998888877 556899999999999999999998 9999999532
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhcccCCCC
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCNRLDYDG 319 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g 319 (479)
..|.+.||+||..+|+++..++... +.+++++|.|||.|..
T Consensus 132 ------------------v~PtnvmGatKrlaE~l~~~~~~~~~~~~t~f~~VRFGNVlgS~------------------ 175 (293)
T PF02719_consen 132 ------------------VNPTNVMGATKRLAEKLVQAANQYSGNSDTKFSSVRFGNVLGSR------------------ 175 (293)
T ss_dssp ------------------SS--SHHHHHHHHHHHHHHHHCCTSSSS--EEEEEEE-EETTGT------------------
T ss_pred ------------------CCCCcHHHHHHHHHHHHHHHHhhhCCCCCcEEEEEEecceecCC------------------
Confidence 2467999999999999999888765 5899999999999986
Q ss_pred cccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhh
Q 011707 320 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEK 398 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~ 398 (479)
+++++.|..++.+|+|+.+.. .+.+|-|+.++++++.++.++.... .|+ +|..-- .++++.|+++.+.+.
T Consensus 176 --GSVip~F~~Qi~~g~PlTvT~-p~mtRffmti~EAv~Lvl~a~~~~~-~ge--ifvl~mg~~v~I~dlA~~~i~~--- 246 (293)
T PF02719_consen 176 --GSVIPLFKKQIKNGGPLTVTD-PDMTRFFMTIEEAVQLVLQAAALAK-GGE--IFVLDMGEPVKILDLAEAMIEL--- 246 (293)
T ss_dssp --TSCHHHHHHHHHTTSSEEECE-TT-EEEEE-HHHHHHHHHHHHHH---TTE--EEEE---TCEECCCHHHHHHHH---
T ss_pred --CcHHHHHHHHHHcCCcceeCC-CCcEEEEecHHHHHHHHHHHHhhCC-CCc--EEEecCCCCcCHHHHHHHHHhh---
Confidence 678999999999999999865 4788999999999999999987643 455 777765 689999999999998
Q ss_pred cCC------cceeeecCCCCc
Q 011707 399 LGL------DVKTISVPNPRV 413 (479)
Q Consensus 399 ~g~------~~~~~~~~~~~~ 413 (479)
.|. ++++.+....++
T Consensus 247 ~g~~~~~~~~i~I~~~GlRpG 267 (293)
T PF02719_consen 247 SGLEPGKKPDIPIKFTGLRPG 267 (293)
T ss_dssp TT-EEEESSSS-EEE----TT
T ss_pred cccccccCCCcceEEcCCCCC
Confidence 653 455555554443
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-29 Score=246.15 Aligned_cols=261 Identities=22% Similarity=0.222 Sum_probs=213.5
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcc-cCCCceeEEEc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS-LTGKNIELYIG 159 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~ 159 (479)
...++|+||||||+|-||+.+++++++.+. +++++++.+...+... ..+.. .....+.++-|
T Consensus 246 ~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~~~~~i~----------------~el~~~~~~~~~~~~ig 309 (588)
T COG1086 246 AMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEYKLYLID----------------MELREKFPELKLRFYIG 309 (588)
T ss_pred hHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchHHHHHHH----------------HHHHhhCCCcceEEEec
Confidence 356899999999999999999999999975 6778887665433321 11211 11357889999
Q ss_pred ccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC
Q 011707 160 DICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI 239 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~ 239 (479)
|+.|.+.++.+++++++|+|||.||..+++..+.+| .+.+++|+.||.|++++|.++|++ +||++||..
T Consensus 310 dVrD~~~~~~~~~~~kvd~VfHAAA~KHVPl~E~nP---~Eai~tNV~GT~nv~~aa~~~~V~-~~V~iSTDK------- 378 (588)
T COG1086 310 DVRDRDRVERAMEGHKVDIVFHAAALKHVPLVEYNP---EEAIKTNVLGTENVAEAAIKNGVK-KFVLISTDK------- 378 (588)
T ss_pred ccccHHHHHHHHhcCCCceEEEhhhhccCcchhcCH---HHHHHHhhHhHHHHHHHHHHhCCC-EEEEEecCc-------
Confidence 999999999999988899999999999999999887 557889999999999999999999 999999942
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhcccC
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCNRLD 316 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~ 316 (479)
...|.|.||+||.++|.++..+++.. +.+++++|.|||.|+.
T Consensus 379 --------------------AV~PtNvmGaTKr~aE~~~~a~~~~~~~~~T~f~~VRFGNVlGSr--------------- 423 (588)
T COG1086 379 --------------------AVNPTNVMGATKRLAEKLFQAANRNVSGTGTRFCVVRFGNVLGSR--------------- 423 (588)
T ss_pred --------------------ccCCchHhhHHHHHHHHHHHHHhhccCCCCcEEEEEEecceecCC---------------
Confidence 23567999999999999999988744 3899999999999997
Q ss_pred CCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHH
Q 011707 317 YDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKA 395 (479)
Q Consensus 317 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~ 395 (479)
+++++-|..++.+|+|+++.. .+.+|-|+.+.|.++.++.+... ...|+ +|-+-- +++++.|+++.+-+.
T Consensus 424 -----GSViPlFk~QI~~GgplTvTd-p~mtRyfMTI~EAv~LVlqA~a~-~~gGe--ifvldMGepvkI~dLAk~mi~l 494 (588)
T COG1086 424 -----GSVIPLFKKQIAEGGPLTVTD-PDMTRFFMTIPEAVQLVLQAGAI-AKGGE--IFVLDMGEPVKIIDLAKAMIEL 494 (588)
T ss_pred -----CCCHHHHHHHHHcCCCccccC-CCceeEEEEHHHHHHHHHHHHhh-cCCCc--EEEEcCCCCeEHHHHHHHHHHH
Confidence 678999999999999998864 58889999999999999999886 34566 777765 789999999999998
Q ss_pred hh-hcCCcceeeecCCCCc
Q 011707 396 GE-KLGLDVKTISVPNPRV 413 (479)
Q Consensus 396 ~~-~~g~~~~~~~~~~~~~ 413 (479)
+. ..+.++++.+....++
T Consensus 495 ~g~~~~~dI~I~~~GlRpG 513 (588)
T COG1086 495 AGQTPPGDIAIKIIGLRPG 513 (588)
T ss_pred hCCCCCCCCCeEEEecCCc
Confidence 21 1124445555544333
|
|
| >KOG1372 consensus GDP-mannose 4,6 dehydratase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-27 Score=208.97 Aligned_cols=315 Identities=20% Similarity=0.199 Sum_probs=236.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
..|..||||-||.=|++|++.|+..||+|.++.|+++...... . ...-.......+.......+|++|.
T Consensus 27 ~rkvALITGItGQDGSYLaEfLL~KgYeVHGiiRRsSsFNT~R-----I------eHlY~nP~~h~~~~mkLHYgDmTDs 95 (376)
T KOG1372|consen 27 PRKVALITGITGQDGSYLAEFLLSKGYEVHGIIRRSSSFNTAR-----I------EHLYSNPHTHNGASMKLHYGDMTDS 95 (376)
T ss_pred cceEEEEecccCCCchHHHHHHHhCCceeeEEEeeccccchhh-----h------hhhhcCchhcccceeEEeeccccch
Confidence 3568999999999999999999999999999998876543211 0 0001111112235678889999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC--CcceEEEeeccccccCCCC-CC
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR--QECHLVKLGTMGEYGTPNI-DI 241 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g--~~~~~V~~SS~~v~g~~~~-~~ 241 (479)
..+.+++....++-|+|+|+..++..++.-| +.+.++...|+.++|++.+.++ .+.+|-..||+..||.... |.
T Consensus 96 s~L~k~I~~ikPtEiYnLaAQSHVkvSFdlp---eYTAeVdavGtLRlLdAi~~c~l~~~VrfYQAstSElyGkv~e~PQ 172 (376)
T KOG1372|consen 96 SCLIKLISTIKPTEVYNLAAQSHVKVSFDLP---EYTAEVDAVGTLRLLDAIRACRLTEKVRFYQASTSELYGKVQEIPQ 172 (376)
T ss_pred HHHHHHHhccCchhhhhhhhhcceEEEeecc---cceeeccchhhhhHHHHHHhcCcccceeEEecccHhhcccccCCCc
Confidence 9999999988999999999999988887755 4456789999999999999886 3358999999999997654 66
Q ss_pred cCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 242 EEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
.|. +|..|.++|+++|..+-.++-.|.+.+++-.+-=-.+|--.|....+..
T Consensus 173 sE~--------------TPFyPRSPYa~aKmy~~WivvNyREAYnmfAcNGILFNHESPRRGenFV-------------- 224 (376)
T KOG1372|consen 173 SET--------------TPFYPRSPYAAAKMYGYWIVVNYREAYNMFACNGILFNHESPRRGENFV-------------- 224 (376)
T ss_pred ccC--------------CCCCCCChhHHhhhhheEEEEEhHHhhcceeeccEeecCCCCccccchh--------------
Confidence 776 6888999999999999999988888887655543344444554433221
Q ss_pred cchHHHHHHHHhcCC-CeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhc
Q 011707 322 GTALNRFCVQAAVGH-PLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKL 399 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~ 399 (479)
.+-|.+-+.++..|+ .-...|+.+..|||-|..|-++|+.++++++.+. -|-|+. +..|++|+++.-... .
T Consensus 225 TRKItRsvakI~~gqqe~~~LGNL~a~RDWGhA~dYVEAMW~mLQ~d~Pd----DfViATge~hsVrEF~~~aF~~---i 297 (376)
T KOG1372|consen 225 TRKITRSVAKISLGQQEKIELGNLSALRDWGHAGDYVEAMWLMLQQDSPD----DFVIATGEQHSVREFCNLAFAE---I 297 (376)
T ss_pred hHHHHHHHHHhhhcceeeEEecchhhhcccchhHHHHHHHHHHHhcCCCC----ceEEecCCcccHHHHHHHHHHh---h
Confidence 122444455555555 3344577888999999999999999999998765 488877 679999999887665 4
Q ss_pred CCcc------------------eeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHH
Q 011707 400 GLDV------------------KTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNF 448 (479)
Q Consensus 400 g~~~------------------~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~ 448 (479)
|... .+...+....+........|.+|+++ |||+|+.++++++++|+.-
T Consensus 298 g~~l~Weg~gv~~~~~n~~g~v~V~v~~kYyRPtEVd~LqGdasKAk~~LgW~pkv~f~eLVkeMv~~ 365 (376)
T KOG1372|consen 298 GEVLNWEGEGVDEVGKNDDGVVRVKVDPKYYRPTEVDTLQGDASKAKKTLGWKPKVTFPELVKEMVAS 365 (376)
T ss_pred CcEEeecccccccccccCCceEEEEecccccCcchhhhhcCChHHHHHhhCCCCccCHHHHHHHHHHh
Confidence 4322 22223333444555666789999987 9999999999999999763
|
|
| >PLN02503 fatty acyl-CoA reductase 2 | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-27 Score=246.04 Aligned_cols=294 Identities=12% Similarity=0.088 Sum_probs=195.3
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCC---eEEEEecccccccccccCCCCCCccchhhhhhhh-----hcccCCCc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGY---EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRC-----WKSLTGKN 153 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~---~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 153 (479)
...++|+|||||||||||++|+++|++.+. +|+++.|..++....+.-...+... .+.+.+.+ +......+
T Consensus 115 ~f~~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~~~~a~eRl~~~l~~~-~lf~~l~~~~g~~~~~~~~~K 193 (605)
T PLN02503 115 EFLRGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKDKEAAIERLKNEVIDA-ELFKCLQETHGKSYQSFMLSK 193 (605)
T ss_pred hhhcCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCCchhHHHHHHHHHhhh-hhHHHHHHhcCcccccccccc
Confidence 356899999999999999999999999764 6788888644321100000000000 01111111 11122357
Q ss_pred eeEEEcccCCh------HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEE
Q 011707 154 IELYIGDICDF------EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVK 227 (479)
Q Consensus 154 v~~v~~Dl~d~------~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~ 227 (479)
+.++.+|++++ +..+.+.+ ++|+|||+|+.+.... ++...+++|+.|+.+++++|++.+..++|||
T Consensus 194 i~~v~GDl~d~~LGLs~~~~~~L~~--~vDiVIH~AA~v~f~~------~~~~a~~vNV~GT~nLLelA~~~~~lk~fV~ 265 (605)
T PLN02503 194 LVPVVGNVCESNLGLEPDLADEIAK--EVDVIINSAANTTFDE------RYDVAIDINTRGPCHLMSFAKKCKKLKLFLQ 265 (605)
T ss_pred EEEEEeeCCCcccCCCHHHHHHHHh--cCCEEEECcccccccc------CHHHHHHHHHHHHHHHHHHHHHcCCCCeEEE
Confidence 99999999987 34555655 7999999999865331 2345678999999999999998753338999
Q ss_pred eeccccccCCCCCCcCCceeecCC------------------CC-----------C---C------C-CC------CCCC
Q 011707 228 LGTMGEYGTPNIDIEEGYITINHN------------------GR-----------T---D------T-LP------YPKQ 262 (479)
Q Consensus 228 ~SS~~v~g~~~~~~~e~~~~~~~~------------------~~-----------~---~------~-~~------~~~~ 262 (479)
+||+.|||...+.+.|..++..+. .. + . . .+ ....
T Consensus 266 vSTayVyG~~~G~i~E~~y~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~l~~~g~~~~~~~~ 345 (605)
T PLN02503 266 VSTAYVNGQRQGRIMEKPFRMGDCIARELGISNSLPHNRPALDIEAEIKLALDSKRHGFQSNSFAQKMKDLGLERAKLYG 345 (605)
T ss_pred ccCceeecCCCCeeeeeecCcccccccccccccccccccccCCHHHHHHHHHHhhhcccchHHHHHHhhhcccchhhhCC
Confidence 999999999876777776642110 00 0 0 0 00 1123
Q ss_pred CCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEec
Q 011707 263 ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYG 342 (479)
Q Consensus 263 ~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 342 (479)
..+.|..+|+++|+++..+. .++|++|+||+.|.+...+|- +++++... .....+..+.+|.-..+++
T Consensus 346 ~pNtYt~TK~lAE~lV~~~~--~~LPv~IvRPsiV~st~~eP~---pGw~d~~~-------~~~p~~~~~g~G~lr~~~~ 413 (605)
T PLN02503 346 WQDTYVFTKAMGEMVINSMR--GDIPVVIIRPSVIESTWKDPF---PGWMEGNR-------MMDPIVLYYGKGQLTGFLA 413 (605)
T ss_pred CCChHHHHHHHHHHHHHHhc--CCCCEEEEcCCEecccccCCc---cccccCcc-------ccchhhhheeccceeEEEe
Confidence 35899999999999998654 489999999999977665542 22222100 1112222233554444778
Q ss_pred CCCceeccccHHHHHHHHHHHHhC-CCC-CCCceEEEeCC---CCcCHHHHHHHHHHHh
Q 011707 343 KGGQTRGYLDIRDTVQCVELAIAN-PAQ-PGEFRVFNQFT---EQFSVNQLAALVTKAG 396 (479)
Q Consensus 343 ~~~~~~~~v~v~Dva~a~~~~~~~-~~~-~g~~~~~ni~~---~~~s~~el~~~i~~~~ 396 (479)
+++...|+|+||.++++++.++.. ... .....+||+++ .++++.|+.+.+.+.+
T Consensus 414 ~~~~~~DiVPVD~vvna~i~a~a~~~~~~~~~~~vYn~ts~~~nP~t~~~~~~~~~~~~ 472 (605)
T PLN02503 414 DPNGVLDVVPADMVVNATLAAMAKHGGAAKPEINVYQIASSVVNPLVFQDLARLLYEHY 472 (605)
T ss_pred CCCeeEeEEeecHHHHHHHHHHHhhhcccCCCCCEEEeCCCCCCCeEHHHHHHHHHHHH
Confidence 889999999999999999999543 211 11235999986 3799999999999864
|
|
| >TIGR01746 Thioester-redct thioester reductase domain | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-27 Score=237.58 Aligned_cols=260 Identities=18% Similarity=0.210 Sum_probs=178.7
Q ss_pred EEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhc--c--cCCCceeEEEccc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK--S--LTGKNIELYIGDI 161 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~v~~v~~Dl 161 (479)
+|||||||||||++|+++|+++| ++|+++.|........ ..+.+...... . ....+++++.+|+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~----------~~l~~~~~~~~~~~~~~~~~~v~~~~~D~ 70 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAM----------ERLREALRSYRLWQEDLARERIEVVAGDL 70 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHH----------HHHHHHHHHhCCCCchhhhCCEEEEeCCc
Confidence 58999999999999999999999 6799998864321000 00011111110 0 0014799999999
Q ss_pred CCh------HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccccc
Q 011707 162 CDF------EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 162 ~d~------~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g 235 (479)
+++ +.+..+.+ ++|+|||||+....... +....++|+.|+.+++++|.+.+.+ +|||+||.++|+
T Consensus 71 ~~~~~gl~~~~~~~~~~--~~d~vih~a~~~~~~~~------~~~~~~~nv~g~~~ll~~a~~~~~~-~~v~iSS~~v~~ 141 (367)
T TIGR01746 71 SEPRLGLSDAEWERLAE--NVDTIVHNGALVNWVYP------YSELRAANVLGTREVLRLAASGRAK-PLHYVSTISVLA 141 (367)
T ss_pred CcccCCcCHHHHHHHHh--hCCEEEeCCcEeccCCc------HHHHhhhhhHHHHHHHHHHhhCCCc-eEEEEccccccC
Confidence 764 45666666 79999999997553221 2345679999999999999998877 899999999997
Q ss_pred CCCC-CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 236 TPNI-DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 236 ~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
.... +..|+.. ..+....+.+.|+.+|+++|.+++.+.+. |++++++|||.|||+.......
T Consensus 142 ~~~~~~~~~~~~---------~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-g~~~~i~Rpg~v~G~~~~g~~~------- 204 (367)
T TIGR01746 142 AIDLSTVTEDDA---------IVTPPPGLAGGYAQSKWVAELLVREASDR-GLPVTIVRPGRILGNSYTGAIN------- 204 (367)
T ss_pred CcCCCCcccccc---------ccccccccCCChHHHHHHHHHHHHHHHhc-CCCEEEECCCceeecCCCCCCC-------
Confidence 6432 2122210 00112234578999999999999887654 9999999999999984322100
Q ss_pred cCCCCcccchHHHHHHHHhcCCCeEEecCCC-ceeccccHHHHHHHHHHHHhCCCCC--CCceEEEeCC-CCcCHHHHHH
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHPLTVYGKGG-QTRGYLDIRDTVQCVELAIANPAQP--GEFRVFNQFT-EQFSVNQLAA 390 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~Dva~a~~~~~~~~~~~--g~~~~~ni~~-~~~s~~el~~ 390 (479)
...++..++......+ .++... ...+|+|++|++++++.++.++... ++ +||+++ +++++.|+++
T Consensus 205 ------~~~~~~~~~~~~~~~~---~~p~~~~~~~~~~~vddva~ai~~~~~~~~~~~~~~--~~~v~~~~~~s~~e~~~ 273 (367)
T TIGR01746 205 ------SSDILWRMVKGCLALG---AYPDSPELTEDLTPVDYVARAIVALSSQPAASAGGP--VFHVVNPEPVSLDEFLE 273 (367)
T ss_pred ------chhHHHHHHHHHHHhC---CCCCCCccccCcccHHHHHHHHHHHHhCCCcccCCc--eEEecCCCCCCHHHHHH
Confidence 0112333444333322 222323 3578999999999999999876542 44 999998 7899999999
Q ss_pred HHHH
Q 011707 391 LVTK 394 (479)
Q Consensus 391 ~i~~ 394 (479)
.+.+
T Consensus 274 ~i~~ 277 (367)
T TIGR01746 274 WLER 277 (367)
T ss_pred HHHH
Confidence 9988
|
It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold. |
| >PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-28 Score=230.22 Aligned_cols=235 Identities=17% Similarity=0.133 Sum_probs=135.5
Q ss_pred EEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhh---hhccc---CCCceeEEEcccC
Q 011707 91 IIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR---CWKSL---TGKNIELYIGDIC 162 (479)
Q Consensus 91 VtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~---~~~~v~~v~~Dl~ 162 (479)
|||||||||.+|+++|++++. +|+|+.|..+.....+ .+.+.+. .+... ...+++++.||++
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~----------rl~~~l~~~~~~~~~~~~~~~ri~~v~GDl~ 70 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALE----------RLKDALKEYGLWDDLDKEALSRIEVVEGDLS 70 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHH----------HHHGGG-SS-HHHHH-HHHTTTEEEEE--TT
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchh----------hhhhhcccccchhhhhhhhhccEEEEecccc
Confidence 799999999999999999987 8999998654311100 0001111 11111 2579999999998
Q ss_pred Ch------HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 163 DF------EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 163 d~------~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
++ +.+.++.+ .+|+|||||+.++....+. ...++|+.||.++++.|...+.+ +|+|+||+.+.+.
T Consensus 71 ~~~lGL~~~~~~~L~~--~v~~IiH~Aa~v~~~~~~~------~~~~~NV~gt~~ll~la~~~~~~-~~~~iSTa~v~~~ 141 (249)
T PF07993_consen 71 QPNLGLSDEDYQELAE--EVDVIIHCAASVNFNAPYS------ELRAVNVDGTRNLLRLAAQGKRK-RFHYISTAYVAGS 141 (249)
T ss_dssp SGGGG--HHHHHHHHH--H--EEEE--SS-SBS-S--------EEHHHHHHHHHHHHHHHTSSS----EEEEEEGGGTTS
T ss_pred ccccCCChHHhhcccc--ccceeeecchhhhhcccch------hhhhhHHHHHHHHHHHHHhccCc-ceEEeccccccCC
Confidence 85 45677766 7999999999887655443 35689999999999999987766 9999999666666
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccC
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLD 316 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~ 316 (479)
......|..++..+ ..........+.|..||+++|++++.++++.|++++|+|||.|+|........
T Consensus 142 ~~~~~~~~~~~~~~----~~~~~~~~~~~gY~~SK~~aE~~l~~a~~~~g~p~~I~Rp~~i~g~~~~G~~~--------- 208 (249)
T PF07993_consen 142 RPGTIEEKVYPEEE----DDLDPPQGFPNGYEQSKWVAERLLREAAQRHGLPVTIYRPGIIVGDSRTGWWN--------- 208 (249)
T ss_dssp -TTT--SSS-HHH------EEE--TTSEE-HHHHHHHHHHHHHHHHHHH---EEEEEE-EEE-SSSSS------------
T ss_pred CCCccccccccccc----ccchhhccCCccHHHHHHHHHHHHHHHHhcCCceEEEEecCcccccCCCceee---------
Confidence 55443332111110 01112335568999999999999999998889999999999999954332110
Q ss_pred CCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHH
Q 011707 317 YDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCV 360 (479)
Q Consensus 317 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~ 360 (479)
........+...+..|.-..+.++.....|+++||.+|++|
T Consensus 209 ---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~vPVD~va~aI 249 (249)
T PF07993_consen 209 ---SDDFFPYLLRSCIALGAFPDLPGDPDARLDLVPVDYVARAI 249 (249)
T ss_dssp ---TTBHHHHHHHHHHHH-EEES-SB---TT--EEEHHHHHHHH
T ss_pred ---ccchHHHHHHHHHHcCCcccccCCCCceEeEECHHHHHhhC
Confidence 00112333333344444333555555669999999999986
|
A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A. |
| >COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-26 Score=220.49 Aligned_cols=270 Identities=15% Similarity=0.170 Sum_probs=179.4
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh-
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF- 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~- 164 (479)
++||+||||||+|.+|+.+|+.+- .+|+|+.|..+.... +..+.........|++....+++++.||+..+
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~~kv~cLVRA~s~E~a-------~~RL~~~~~~~~~~~e~~~~ri~vv~gDl~e~~ 73 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSDAKVICLVRAQSDEAA-------LARLEKTFDLYRHWDELSADRVEVVAGDLAEPD 73 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCCCcEEEEEecCCHHHH-------HHHHHHHhhhhhhhhhhhcceEEEEeccccccc
Confidence 579999999999999999999985 599999997653211 11222222233456667778999999999844
Q ss_pred -----HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC
Q 011707 165 -----EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI 239 (479)
Q Consensus 165 -----~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~ 239 (479)
..+.++.+ .+|.|||||+.++.-..+. +....|+.||..+++.|.....| .|+|+||.+|+.....
T Consensus 74 lGL~~~~~~~La~--~vD~I~H~gA~Vn~v~pYs------~L~~~NVlGT~evlrLa~~gk~K-p~~yVSsisv~~~~~~ 144 (382)
T COG3320 74 LGLSERTWQELAE--NVDLIIHNAALVNHVFPYS------ELRGANVLGTAEVLRLAATGKPK-PLHYVSSISVGETEYY 144 (382)
T ss_pred CCCCHHHHHHHhh--hcceEEecchhhcccCcHH------HhcCcchHhHHHHHHHHhcCCCc-eeEEEeeeeecccccc
Confidence 56777877 7999999999887544432 35678999999999999987766 8999999998765442
Q ss_pred -CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCC
Q 011707 240 -DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318 (479)
Q Consensus 240 -~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~ 318 (479)
...++.. ..+++........++|+.||+++|.+++.+... |++++|+|||+|.|+......+..+
T Consensus 145 ~~~~~~~~-----~~~~~~~~~~~~~~GY~~SKwvaE~Lvr~A~~r-GLpv~I~Rpg~I~gds~tG~~n~~D-------- 210 (382)
T COG3320 145 SNFTVDFD-----EISPTRNVGQGLAGGYGRSKWVAEKLVREAGDR-GLPVTIFRPGYITGDSRTGALNTRD-------- 210 (382)
T ss_pred CCCccccc-----cccccccccCccCCCcchhHHHHHHHHHHHhhc-CCCeEEEecCeeeccCccCccccch--------
Confidence 1111111 001111223345789999999999999998877 9999999999999998644322222
Q ss_pred CcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC---------CCCCCceEEEeCC--CCcCHHH
Q 011707 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP---------AQPGEFRVFNQFT--EQFSVNQ 387 (479)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~---------~~~g~~~~~ni~~--~~~s~~e 387 (479)
++.+++.-.+.-+ ++++.....+.+.++++++++.....+. .+...+..|++.. ..+.+.+
T Consensus 211 -----~~~Rlv~~~~~lg---~~P~~~~~~~~~p~~~v~~~v~~~~~~~~~~~~~l~~~~~~~f~~~~~~~~~~~i~l~~ 282 (382)
T COG3320 211 -----FLTRLVLGLLQLG---IAPDSEYSLDMLPVDHVARAVVAPSVQVAEAIAALGAHSDIRFNQLHMLTHPDEIGLDE 282 (382)
T ss_pred -----HHHHHHHHHHHhC---CCCCcccchhhCccceeeEEeehhhhhHHHHHHHhccCccchhhheecccCCCccchhH
Confidence 2334444443322 2233334455555555554444332222 1112222455333 4688888
Q ss_pred HHHHHHH
Q 011707 388 LAALVTK 394 (479)
Q Consensus 388 l~~~i~~ 394 (479)
+.+.+.+
T Consensus 283 ~~~w~~~ 289 (382)
T COG3320 283 YVDWLIS 289 (382)
T ss_pred HHHhHhh
Confidence 8888887
|
|
| >PRK12320 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.7e-25 Score=231.69 Aligned_cols=236 Identities=14% Similarity=0.115 Sum_probs=170.3
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+||||||+||||++|+++|+++|++|+++++..... ...+++++.+|++|+.
T Consensus 1 MkILVTGAaGFIGs~La~~Ll~~G~~Vi~ldr~~~~~--------------------------~~~~ve~v~~Dl~d~~- 53 (699)
T PRK12320 1 MQILVTDATGAVGRSVTRQLIAAGHTVSGIAQHPHDA--------------------------LDPRVDYVCASLRNPV- 53 (699)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEeCChhhc--------------------------ccCCceEEEccCCCHH-
Confidence 4799999999999999999999999999999753210 0136889999999985
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCce
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYI 246 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~~ 246 (479)
+.+++. ++|+|||+|+... .. ...+|+.|+.|++++|++.|+ +|||+||. +|.+.
T Consensus 54 l~~al~--~~D~VIHLAa~~~-----~~------~~~vNv~Gt~nLleAA~~~Gv--RiV~~SS~--~G~~~-------- 108 (699)
T PRK12320 54 LQELAG--EADAVIHLAPVDT-----SA------PGGVGITGLAHVANAAARAGA--RLLFVSQA--AGRPE-------- 108 (699)
T ss_pred HHHHhc--CCCEEEEcCccCc-----cc------hhhHHHHHHHHHHHHHHHcCC--eEEEEECC--CCCCc--------
Confidence 777777 7999999998531 11 125799999999999999883 79999985 34221
Q ss_pred eecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHH
Q 011707 247 TINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~ 326 (479)
.|. .+|.++. .++++++++|++++|||+.... ...++.
T Consensus 109 -------------------~~~----~aE~ll~----~~~~p~~ILR~~nVYGp~~~~~---------------~~r~I~ 146 (699)
T PRK12320 109 -------------------LYR----QAETLVS----TGWAPSLVIRIAPPVGRQLDWM---------------VCRTVA 146 (699)
T ss_pred -------------------ccc----HHHHHHH----hcCCCEEEEeCceecCCCCccc---------------HhHHHH
Confidence 121 3666543 3579999999999999964321 123456
Q ss_pred HHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCccee
Q 011707 327 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVKT 405 (479)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~~~ 405 (479)
.++.....++++. +|||+|++++++.+++.+. +. +|||++ +.+|+.|+++.+... +....+
T Consensus 147 ~~l~~~~~~~pI~----------vIyVdDvv~alv~al~~~~--~G--iyNIG~~~~~Si~el~~~i~~~----~p~~~~ 208 (699)
T PRK12320 147 TLLRSKVSARPIR----------VLHLDDLVRFLVLALNTDR--NG--VVDLATPDTTNVVTAWRLLRSV----DPHLRT 208 (699)
T ss_pred HHHHHHHcCCceE----------EEEHHHHHHHHHHHHhCCC--CC--EEEEeCCCeeEHHHHHHHHHHh----CCCccc
Confidence 6666555555544 3899999999999998632 23 999999 679999999999774 221111
Q ss_pred eecCCCCcccccccccCCchHHHH-cCCcccccHHH
Q 011707 406 ISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDS 440 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~ 440 (479)
.. .........|+..++. ++|.|+..+++
T Consensus 209 ~~------~~~~~~~~pdi~~a~~~~~w~~~~~~~~ 238 (699)
T PRK12320 209 RR------VRSWEQLIPEVDIAAVQEDWNFEFGWQA 238 (699)
T ss_pred cc------cccHHHhCCCCchhhhhcCCCCcchHHH
Confidence 11 1112233567888776 99999986543
|
|
| >PLN02260 probable rhamnose biosynthetic enzyme | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-25 Score=239.02 Aligned_cols=264 Identities=14% Similarity=0.138 Sum_probs=183.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
..|+||||||+||||++|++.|.++|++|... .+|++|.
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v~~~-----------------------------------------~~~l~d~ 417 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAYEYG-----------------------------------------KGRLEDR 417 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeEEee-----------------------------------------ccccccH
Confidence 46789999999999999999999999987421 2467888
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcc---cccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCC---
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAP---YSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN--- 238 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~---~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~--- 238 (479)
+.+...+...++|+|||+|+.+... .+..++ ...+++|+.|+.+++++|++.|+ ++|++||.+||+...
T Consensus 418 ~~v~~~i~~~~pd~Vih~Aa~~~~~~~~~~~~~~---~~~~~~N~~gt~~l~~a~~~~g~--~~v~~Ss~~v~~~~~~~~ 492 (668)
T PLN02260 418 SSLLADIRNVKPTHVFNAAGVTGRPNVDWCESHK---VETIRANVVGTLTLADVCRENGL--LMMNFATGCIFEYDAKHP 492 (668)
T ss_pred HHHHHHHHhhCCCEEEECCcccCCCCCChHHhCH---HHHHHHHhHHHHHHHHHHHHcCC--eEEEEcccceecCCcccc
Confidence 8898888877899999999986432 223333 56788999999999999999985 567888888886421
Q ss_pred ----CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 239 ----IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 239 ----~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
.++.|++ .+..+.+.|+.||+++|++++.+. +..++|+..+||.+...
T Consensus 493 ~~~~~p~~E~~-------------~~~~~~~~Yg~sK~~~E~~~~~~~-----~~~~~r~~~~~~~~~~~---------- 544 (668)
T PLN02260 493 EGSGIGFKEED-------------KPNFTGSFYSKTKAMVEELLREYD-----NVCTLRVRMPISSDLSN---------- 544 (668)
T ss_pred cccCCCCCcCC-------------CCCCCCChhhHHHHHHHHHHHhhh-----hheEEEEEEecccCCCC----------
Confidence 1344431 122235899999999999998764 35678888888653210
Q ss_pred cCCCCcccchHHHHHHHHhcCCC-eEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHH
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHP-LTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALV 392 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i 392 (479)
...|+..+++... +.+ + .+..+++|++.+++.+++... ++ +||+++ +.+|+.|+++.+
T Consensus 545 ----------~~nfv~~~~~~~~~~~v-p-----~~~~~~~~~~~~~~~l~~~~~--~g--iyni~~~~~~s~~e~a~~i 604 (668)
T PLN02260 545 ----------PRNFITKISRYNKVVNI-P-----NSMTVLDELLPISIEMAKRNL--RG--IWNFTNPGVVSHNEILEMY 604 (668)
T ss_pred ----------ccHHHHHHhccceeecc-C-----CCceehhhHHHHHHHHHHhCC--Cc--eEEecCCCcCcHHHHHHHH
Confidence 1234555554443 222 1 246778899999888887422 33 999999 679999999999
Q ss_pred HHHhhhc--CCcceeeecCCCC--cccccccccCCchHHHH-cCCcccccHHHHHHHHHH
Q 011707 393 TKAGEKL--GLDVKTISVPNPR--VEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLN 447 (479)
Q Consensus 393 ~~~~~~~--g~~~~~~~~~~~~--~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~ 447 (479)
.+. + |..+..+...... .......+.+|++|+++ +|. + .+|+|.++.++.
T Consensus 605 ~~~---~~~~~~~~~~~~~~~~~~~~a~rp~~~l~~~k~~~~~~~-~-~~~~~~l~~~~~ 659 (668)
T PLN02260 605 KDY---IDPGFKWSNFTLEEQAKVIVAPRSNNEMDASKLKKEFPE-L-LSIKESLIKYVF 659 (668)
T ss_pred HHh---cCCcccccccCHHHhhhHhhCCCccccccHHHHHHhCcc-c-cchHHHHHHHHh
Confidence 987 5 3221111111111 11122223799999987 787 4 378888887764
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=200.97 Aligned_cols=280 Identities=20% Similarity=0.229 Sum_probs=188.8
Q ss_pred EEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHHH
Q 011707 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLS 168 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~~ 168 (479)
|+|||||||||++|+..|.+.||+|+++.|........ .+..+. ..+.+.
T Consensus 1 IliTGgTGlIG~~L~~~L~~~gh~v~iltR~~~~~~~~-----------------------~~~~v~-------~~~~~~ 50 (297)
T COG1090 1 ILITGGTGLIGRALTARLRKGGHQVTILTRRPPKASQN-----------------------LHPNVT-------LWEGLA 50 (297)
T ss_pred CeEeccccchhHHHHHHHHhCCCeEEEEEcCCcchhhh-----------------------cCcccc-------ccchhh
Confidence 68999999999999999999999999999876532110 001111 223344
Q ss_pred HHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC--CcceEEEeeccccccCCCC-CCcCCc
Q 011707 169 ESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR--QECHLVKLGTMGEYGTPNI-DIEEGY 245 (479)
Q Consensus 169 ~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g--~~~~~V~~SS~~v~g~~~~-~~~e~~ 245 (479)
.+... ++|+|||+||..-.... +++......++.-+..|..|.++..+.. ++ .||.-|..+.||+... .++|+.
T Consensus 51 ~~~~~-~~DavINLAG~~I~~rr-Wt~~~K~~i~~SRi~~T~~L~e~I~~~~~~P~-~~isaSAvGyYG~~~~~~~tE~~ 127 (297)
T COG1090 51 DALTL-GIDAVINLAGEPIAERR-WTEKQKEEIRQSRINTTEKLVELIAASETKPK-VLISASAVGYYGHSGDRVVTEES 127 (297)
T ss_pred hcccC-CCCEEEECCCCcccccc-CCHHHHHHHHHHHhHHHHHHHHHHHhccCCCc-EEEecceEEEecCCCceeeecCC
Confidence 44433 69999999996432222 2333345667888899999999998654 43 7888888899998764 556641
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
+.....-+..-..-|+.... ++..|.+++++|.|+|.|+. .| ++
T Consensus 128 ---------------~~g~~Fla~lc~~WE~~a~~-a~~~gtRvvllRtGvVLs~~----------------GG----aL 171 (297)
T COG1090 128 ---------------PPGDDFLAQLCQDWEEEALQ-AQQLGTRVVLLRTGVVLSPD----------------GG----AL 171 (297)
T ss_pred ---------------CCCCChHHHHHHHHHHHHhh-hhhcCceEEEEEEEEEecCC----------------Cc----ch
Confidence 11122222222233443332 23348999999999999986 23 33
Q ss_pred HHHHHHHh--cCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCc
Q 011707 326 NRFCVQAA--VGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLD 402 (479)
Q Consensus 326 ~~~~~~~~--~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~ 402 (479)
..++.... .|.+ +|+|.|.++|||++|+++++..++++..-.| .||++. .+++..+|.+.+.++ ++++
T Consensus 172 ~~m~~~fk~glGG~---~GsGrQ~~SWIhieD~v~~I~fll~~~~lsG---p~N~taP~PV~~~~F~~al~r~---l~RP 242 (297)
T COG1090 172 GKMLPLFKLGLGGK---LGSGRQWFSWIHIEDLVNAILFLLENEQLSG---PFNLTAPNPVRNKEFAHALGRA---LHRP 242 (297)
T ss_pred hhhcchhhhccCCc---cCCCCceeeeeeHHHHHHHHHHHHhCcCCCC---cccccCCCcCcHHHHHHHHHHH---hCCC
Confidence 33333232 3333 5899999999999999999999999988887 699999 899999999999998 7765
Q ss_pred ceeeecCCCC---cccccccccCC-----chHHHHcCCcccc-cHHHHHHHHHH
Q 011707 403 VKTISVPNPR---VEAEEHYYNAK-----HTKLIELGLQPHI-LSDSLLDSLLN 447 (479)
Q Consensus 403 ~~~~~~~~~~---~~~~~~~~~~d-----~~k~~~lG~~p~~-~~~~~~~~~~~ 447 (479)
... .+|... .-.......++ ..|+.+.||+.++ ++++++++++.
T Consensus 243 ~~~-~vP~~~~rl~LGe~a~~lL~gQrvlP~kl~~aGF~F~y~dl~~AL~~il~ 295 (297)
T COG1090 243 AIL-PVPSFALRLLLGEMADLLLGGQRVLPKKLEAAGFQFQYPDLEEALADILK 295 (297)
T ss_pred ccc-cCcHHHHHHHhhhhHHHHhccchhhHHHHHHCCCeeecCCHHHHHHHHHh
Confidence 433 222210 01111122334 4455568999998 99999988764
|
|
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=203.07 Aligned_cols=243 Identities=16% Similarity=0.093 Sum_probs=169.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.|+||||||+||||++++++|+++|++|++++|.... ...+......++.++.+|++|.+
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~~~~--------------------~~~~~~~~~~~~~~~~~D~~~~~ 61 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLARGDRVAATVRRPDA--------------------LDDLKARYGDRLWVLQLDVTDSA 61 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHH--------------------HHHHHHhccCceEEEEccCCCHH
Confidence 4689999999999999999999999999999875321 11111112346889999999999
Q ss_pred HHHHHhhh-----cCCCEEEEcccccCccccc-ccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecccccc
Q 011707 166 FLSESFKS-----FEPDAVVHFGEQRSAPYSM-IDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 166 ~~~~~~~~-----~~~D~Vih~A~~~~~~~~~-~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~g 235 (479)
++.+++++ .++|+||||||........ .+.+++...+++|+.|+.++++++ ++.+.+ +||++||.+...
T Consensus 62 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~ 140 (276)
T PRK06482 62 AVRAVVDRAFAALGRIDVVVSNAGYGLFGAAEELSDAQIRRQIDTNLIGSIQVIRAALPHLRRQGGG-RIVQVSSEGGQI 140 (276)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcCccccc
Confidence 88887753 2589999999976543322 234456778899999999999997 445555 999999954321
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCee---ecCCCCchhhhH
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVV---YGVRTDETAMHE 309 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v---~Gp~~~~~~~~~ 309 (479)
+..+.+.|+.||++.|.+++.++.+ +|++++++|||.+ ||++.....
T Consensus 141 ------------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~v~pg~~~t~~~~~~~~~~--- 193 (276)
T PRK06482 141 ------------------------AYPGFSLYHATKWGIEGFVEAVAQEVAPFGIEFTIVEPGPARTNFGAGLDRGA--- 193 (276)
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCccccCCcccccccC---
Confidence 1123678999999999999998876 5899999999988 665432110
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHH
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQL 388 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el 388 (479)
....+.......+......+.+. -+.+++|++++++.++..+.. +. .||+++ ...++.|+
T Consensus 194 -------~~~~~~~~~~~~~~~~~~~~~~~---------~~~d~~~~~~a~~~~~~~~~~-~~--~~~~g~~~~~~~~~~ 254 (276)
T PRK06482 194 -------PLDAYDDTPVGDLRRALADGSFA---------IPGDPQKMVQAMIASADQTPA-PR--RLTLGSDAYASIRAA 254 (276)
T ss_pred -------CCccccchhhHHHHHHHhhccCC---------CCCCHHHHHHHHHHHHcCCCC-Ce--EEecChHHHHHHHHH
Confidence 00011111111222222222211 135789999999999986544 33 799998 46777777
Q ss_pred HHHHHHH
Q 011707 389 AALVTKA 395 (479)
Q Consensus 389 ~~~i~~~ 395 (479)
++.+.+.
T Consensus 255 ~~~~~~~ 261 (276)
T PRK06482 255 LSERLAA 261 (276)
T ss_pred HHHHHHH
Confidence 7776665
|
|
| >KOG2865 consensus NADH:ubiquinone oxidoreductase, NDUFA9/39kDa subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-24 Score=191.91 Aligned_cols=241 Identities=15% Similarity=0.169 Sum_probs=190.9
Q ss_pred cCCCCCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEE
Q 011707 78 QSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELY 157 (479)
Q Consensus 78 ~~~~~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 157 (479)
..+.++..|-.+-|+|||||+|++++.+|.+.|-+|++-.|-..... ..+..+ .++ ..+-++
T Consensus 53 tGGRsS~sGiVaTVFGAtGFlGryvvnklak~GSQviiPyR~d~~~~------r~lkvm----------GdL--GQvl~~ 114 (391)
T KOG2865|consen 53 TGGRSSVSGIVATVFGATGFLGRYVVNKLAKMGSQVIIPYRGDEYDP------RHLKVM----------GDL--GQVLFM 114 (391)
T ss_pred CCCcccccceEEEEecccccccHHHHHHHhhcCCeEEEeccCCccch------hheeec----------ccc--cceeee
Confidence 44556677889999999999999999999999999999877543211 111111 111 578899
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCC
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTP 237 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~ 237 (479)
..|+.|++++.++++ ..++|||+.|.--....+ .+.++|+.+...+.+.|++.|+. +|||+|+.+.
T Consensus 115 ~fd~~DedSIr~vvk--~sNVVINLIGrd~eTknf-------~f~Dvn~~~aerlAricke~GVe-rfIhvS~Lga---- 180 (391)
T KOG2865|consen 115 KFDLRDEDSIRAVVK--HSNVVINLIGRDYETKNF-------SFEDVNVHIAERLARICKEAGVE-RFIHVSCLGA---- 180 (391)
T ss_pred ccCCCCHHHHHHHHH--hCcEEEEeeccccccCCc-------ccccccchHHHHHHHHHHhhChh-heeehhhccc----
Confidence 999999999999999 789999999853222222 24578999999999999999998 9999998651
Q ss_pred CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCC
Q 011707 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDY 317 (479)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~ 317 (479)
.....+.|-.+|+++|..+++..- ..+|+||..|||..+
T Consensus 181 ----------------------nv~s~Sr~LrsK~~gE~aVrdafP----eAtIirPa~iyG~eD--------------- 219 (391)
T KOG2865|consen 181 ----------------------NVKSPSRMLRSKAAGEEAVRDAFP----EATIIRPADIYGTED--------------- 219 (391)
T ss_pred ----------------------cccChHHHHHhhhhhHHHHHhhCC----cceeechhhhcccch---------------
Confidence 123357899999999999887543 489999999999874
Q ss_pred CCcccchHHHHHHHHhcCCCeEEecCCC-ceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHH
Q 011707 318 DGVFGTALNRFCVQAAVGHPLTVYGKGG-QTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKA 395 (479)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~ 395 (479)
++++.+.....+-+.+++++.|+ .+...|||-|+|.+|+.++..+...|+ +|...| ..+.+.|+++.+.+.
T Consensus 220 -----rfln~ya~~~rk~~~~pL~~~GekT~K~PVyV~DVaa~IvnAvkDp~s~Gk--tye~vGP~~yql~eLvd~my~~ 292 (391)
T KOG2865|consen 220 -----RFLNYYASFWRKFGFLPLIGKGEKTVKQPVYVVDVAAAIVNAVKDPDSMGK--TYEFVGPDRYQLSELVDIMYDM 292 (391)
T ss_pred -----hHHHHHHHHHHhcCceeeecCCcceeeccEEEehHHHHHHHhccCccccCc--eeeecCCchhhHHHHHHHHHHH
Confidence 35666665555566888888775 556889999999999999999988887 999998 789999999999887
Q ss_pred hhh
Q 011707 396 GEK 398 (479)
Q Consensus 396 ~~~ 398 (479)
..+
T Consensus 293 ~~~ 295 (391)
T KOG2865|consen 293 ARE 295 (391)
T ss_pred Hhh
Confidence 444
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.5e-24 Score=204.25 Aligned_cols=216 Identities=13% Similarity=0.104 Sum_probs=158.5
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFL 167 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~ 167 (479)
+||||||||+||++++++|+++|++|+++.|..... ...++..+.+|++|++++
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R~~~~~--------------------------~~~~~~~~~~d~~d~~~l 54 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASRSSSSS--------------------------AGPNEKHVKFDWLDEDTW 54 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeCCCccc--------------------------cCCCCccccccCCCHHHH
Confidence 489999999999999999999999999999865421 013566778999999999
Q ss_pred HHHhhh----cC-CCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCc
Q 011707 168 SESFKS----FE-PDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIE 242 (479)
Q Consensus 168 ~~~~~~----~~-~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~ 242 (479)
.++++. .+ +|.|+|+++... + ......+++++|++.|++ +||++||.+++...
T Consensus 55 ~~a~~~~~~~~g~~d~v~~~~~~~~------~----------~~~~~~~~i~aa~~~gv~-~~V~~Ss~~~~~~~----- 112 (285)
T TIGR03649 55 DNPFSSDDGMEPEISAVYLVAPPIP------D----------LAPPMIKFIDFARSKGVR-RFVLLSASIIEKGG----- 112 (285)
T ss_pred HHHHhcccCcCCceeEEEEeCCCCC------C----------hhHHHHHHHHHHHHcCCC-EEEEeeccccCCCC-----
Confidence 999831 16 899999986311 0 124556899999999998 99999986543110
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH-hCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA-WGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
..+...|..+ ++ .|++++++||+.+|+.....
T Consensus 113 --------------------------~~~~~~~~~l----~~~~gi~~tilRp~~f~~~~~~~----------------- 145 (285)
T TIGR03649 113 --------------------------PAMGQVHAHL----DSLGGVEYTVLRPTWFMENFSEE----------------- 145 (285)
T ss_pred --------------------------chHHHHHHHH----HhccCCCEEEEeccHHhhhhccc-----------------
Confidence 1122334433 34 49999999999888643110
Q ss_pred cchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcC
Q 011707 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g 400 (479)
.+...+..+..+ +.+.++..++|+|++|+++++..++.++...++ +|++.+ +.+|+.|+++.+.+. +|
T Consensus 146 -----~~~~~~~~~~~~-~~~~g~~~~~~v~~~Dva~~~~~~l~~~~~~~~--~~~l~g~~~~s~~eia~~l~~~---~g 214 (285)
T TIGR03649 146 -----FHVEAIRKENKI-YSATGDGKIPFVSADDIARVAYRALTDKVAPNT--DYVVLGPELLTYDDVAEILSRV---LG 214 (285)
T ss_pred -----ccccccccCCeE-EecCCCCccCcccHHHHHHHHHHHhcCCCcCCC--eEEeeCCccCCHHHHHHHHHHH---hC
Confidence 011112222333 345567788999999999999999988765555 899988 789999999999999 99
Q ss_pred CcceeeecC
Q 011707 401 LDVKTISVP 409 (479)
Q Consensus 401 ~~~~~~~~~ 409 (479)
.++++...+
T Consensus 215 ~~v~~~~~~ 223 (285)
T TIGR03649 215 RKITHVKLT 223 (285)
T ss_pred CceEEEeCC
Confidence 888776655
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=249.79 Aligned_cols=274 Identities=19% Similarity=0.195 Sum_probs=180.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC----CeEEEEecccccccccccCCCCCCccchhhhhhh---hhcccCCCceeEE
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG----YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR---CWKSLTGKNIELY 157 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~v 157 (479)
..++|||||||||||.+++++|+++| ++|+++.|........ ..+.+... .+......+++++
T Consensus 970 ~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~~~~~~----------~~l~~~~~~~~~~~~~~~~~i~~~ 1039 (1389)
T TIGR03443 970 TPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKSEEAGL----------ERLRKTGTTYGIWDEEWASRIEVV 1039 (1389)
T ss_pred CCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCChHHHH----------HHHHHHHHHhCCCchhhhcceEEE
Confidence 35799999999999999999999987 7899988854321100 00000000 0111112478999
Q ss_pred EcccCCh------HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecc
Q 011707 158 IGDICDF------EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTM 231 (479)
Q Consensus 158 ~~Dl~d~------~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~ 231 (479)
.+|++++ +.+.++.. ++|+|||||+..+..... ..+...|+.|+.+++++|++.+.+ +|+|+||.
T Consensus 1040 ~gDl~~~~lgl~~~~~~~l~~--~~d~iiH~Aa~~~~~~~~------~~~~~~nv~gt~~ll~~a~~~~~~-~~v~vSS~ 1110 (1389)
T TIGR03443 1040 LGDLSKEKFGLSDEKWSDLTN--EVDVIIHNGALVHWVYPY------SKLRDANVIGTINVLNLCAEGKAK-QFSFVSST 1110 (1389)
T ss_pred eccCCCccCCcCHHHHHHHHh--cCCEEEECCcEecCccCH------HHHHHhHHHHHHHHHHHHHhCCCc-eEEEEeCe
Confidence 9999753 55666666 799999999976533222 224467999999999999988877 99999999
Q ss_pred ccccCCCC-CCcCCceeecCCCCC---CCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhh
Q 011707 232 GEYGTPNI-DIEEGYITINHNGRT---DTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 232 ~v~g~~~~-~~~e~~~~~~~~~~~---~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
++|+.... +..+........+.. ...+.+..+.+.|+.||+++|.++..+.+ .|++++++|||+|||+...+...
T Consensus 1111 ~v~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~Y~~sK~~aE~l~~~~~~-~g~~~~i~Rpg~v~G~~~~g~~~ 1189 (1389)
T TIGR03443 1111 SALDTEYYVNLSDELVQAGGAGIPESDDLMGSSKGLGTGYGQSKWVAEYIIREAGK-RGLRGCIVRPGYVTGDSKTGATN 1189 (1389)
T ss_pred eecCcccccchhhhhhhccCCCCCcccccccccccCCCChHHHHHHHHHHHHHHHh-CCCCEEEECCCccccCCCcCCCC
Confidence 99974321 100000000000000 00111233457899999999999988765 49999999999999997543211
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHH
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVN 386 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~ 386 (479)
...++..++..... +..+++....++|+||+|++++++.++.++.......+||+++ ..+++.
T Consensus 1190 -------------~~~~~~~~~~~~~~---~~~~p~~~~~~~~~~Vddva~ai~~~~~~~~~~~~~~i~~~~~~~~~~~~ 1253 (1389)
T TIGR03443 1190 -------------TDDFLLRMLKGCIQ---LGLIPNINNTVNMVPVDHVARVVVAAALNPPKESELAVAHVTGHPRIRFN 1253 (1389)
T ss_pred -------------chhHHHHHHHHHHH---hCCcCCCCCccccccHHHHHHHHHHHHhCCcccCCCCEEEeCCCCCCcHH
Confidence 01223333333222 2233445567899999999999999988654222234999998 579999
Q ss_pred HHHHHHHH
Q 011707 387 QLAALVTK 394 (479)
Q Consensus 387 el~~~i~~ 394 (479)
++++.+.+
T Consensus 1254 ~~~~~l~~ 1261 (1389)
T TIGR03443 1254 DFLGTLKT 1261 (1389)
T ss_pred HHHHHHHH
Confidence 99999976
|
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal. |
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-23 Score=198.46 Aligned_cols=238 Identities=17% Similarity=0.086 Sum_probs=163.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.++++.|+++|++|++++|..... .+..+.+.. .+.++.++.+|++|
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~Dl~~ 67 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGA----------------NAVADEINK-AGGKAIGVAMDVTN 67 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHH----------------HHHHHHHHh-cCceEEEEECCCCC
Confidence 4578999999999999999999999999999998864321 111222221 13467889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHH----HHHHHHHH-HHcCCcceEEEeeccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIG----TLNVLFAM-KEFRQECHLVKLGTMG 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g----~~~ll~~a-~~~g~~~~~V~~SS~~ 232 (479)
.+.++++++.. ++|+||||||....... ....+++..++++|+.+ +.++++++ ++.+.+ +||++||..
T Consensus 68 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~~-~iv~~ss~~ 146 (262)
T PRK13394 68 EDAVNAGIDKVAERFGSVDILVSNAGIQIVNPIENYSFADWKKMQAIHVDGAFLTTKAALKHMYKDDRGG-VVIYMGSVH 146 (262)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCccCCCCchhhCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcCCc-EEEEEcchh
Confidence 99998887642 48999999997543222 22334566778999999 55566666 555565 999999954
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +..+...|+.+|++.+.+++.++++ .+++++++|||.+++|...... .
T Consensus 147 ~~~------------------------~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~v~pg~v~~~~~~~~~--~ 200 (262)
T PRK13394 147 SHE------------------------ASPLKSAYVTAKHGLLGLARVLAKEGAKHNVRSHVVCPGFVRTPLVDKQI--P 200 (262)
T ss_pred hcC------------------------CCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccchhhhhhh--H
Confidence 321 1123578999999999999998877 4899999999999998632110 0
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCC--CCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP--GEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~--g~~~~~ni~~~ 381 (479)
.... .. .......+..++ ..+...++|++++|++++++.++..+... |+ .|++.++
T Consensus 201 ~~~~---~~---~~~~~~~~~~~~--------~~~~~~~~~~~~~dva~a~~~l~~~~~~~~~g~--~~~~~~g 258 (262)
T PRK13394 201 EQAK---EL---GISEEEVVKKVM--------LGKTVDGVFTTVEDVAQTVLFLSSFPSAALTGQ--SFVVSHG 258 (262)
T ss_pred hhhh---cc---CCChHHHHHHHH--------hcCCCCCCCCCHHHHHHHHHHHcCccccCCcCC--EEeeCCc
Confidence 0000 00 000111222222 22344578999999999999999865432 44 8988875
|
|
| >KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.7e-24 Score=208.82 Aligned_cols=292 Identities=14% Similarity=0.059 Sum_probs=197.9
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCC---eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEE
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGY---EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYI 158 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~---~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 158 (479)
..+++|+|||||||||+|+-+++.|++.-- +++.+-|.+++....+.-.... .. .+.+.+.+.......++..+.
T Consensus 8 ~f~~~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLiR~k~g~~~~~Rl~~~~-~~-~lF~~l~~~~p~~l~Kv~pi~ 85 (467)
T KOG1221|consen 8 QFYKNKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLIRAKKGKAAQERLRTEL-KD-PLFEVLKEKKPEALEKVVPIA 85 (467)
T ss_pred HHhCCCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEEecCCCCCHHHHHHHHH-hh-hHHHHHHhhCccceecceecc
Confidence 356899999999999999999999999853 5666666554321110000000 00 233333333333446899999
Q ss_pred cccCCh------HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccc
Q 011707 159 GDICDF------EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMG 232 (479)
Q Consensus 159 ~Dl~d~------~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~ 232 (479)
||++++ .++..+.+ .+|+|||+||.+.+.+.... ...+|+.||+++++.|+++....-|||+||+.
T Consensus 86 GDi~~~~LGis~~D~~~l~~--eV~ivih~AAtvrFde~l~~------al~iNt~Gt~~~l~lak~~~~l~~~vhVSTAy 157 (467)
T KOG1221|consen 86 GDISEPDLGISESDLRTLAD--EVNIVIHSAATVRFDEPLDV------ALGINTRGTRNVLQLAKEMVKLKALVHVSTAY 157 (467)
T ss_pred ccccCcccCCChHHHHHHHh--cCCEEEEeeeeeccchhhhh------hhhhhhHhHHHHHHHHHHhhhhheEEEeehhh
Confidence 999875 44554555 89999999998776655542 46899999999999999987655899999976
Q ss_pred cccCCCCCCcCCceeecC--CC----------CCC-----CCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecC
Q 011707 233 EYGTPNIDIEEGYITINH--NG----------RTD-----TLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQG 295 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~--~~----------~~~-----~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~ 295 (479)
+. .....+.|..++..+ +. +++ .........+.|.-+|+.+|.++...+ .++|++|+||+
T Consensus 158 ~n-~~~~~i~E~~y~~~~~~~~~~~i~~~~~~~~~~ld~~~~~l~~~~PNTYtfTKal~E~~i~~~~--~~lPivIiRPs 234 (467)
T KOG1221|consen 158 SN-CNVGHIEEKPYPMPETCNPEKILKLDENLSDELLDQKAPKLLGGWPNTYTFTKALAEMVIQKEA--ENLPLVIIRPS 234 (467)
T ss_pred ee-cccccccccccCccccCCHHHHHhhhccchHHHHHHhhHHhcCCCCCceeehHhhHHHHHHhhc--cCCCeEEEcCC
Confidence 65 222244444443322 11 000 011222457899999999999997754 48999999999
Q ss_pred eeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC--CC-CC
Q 011707 296 VVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA--QP-GE 372 (479)
Q Consensus 296 ~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~-g~ 372 (479)
.|.+....| .++|..|-.+++|+. ....+|.--.+..+.+...|+|+||+++++++.+.-.-. .. .+
T Consensus 235 iI~st~~EP--~pGWidn~~gp~g~i--------~g~gkGvlr~~~~d~~~~adiIPvD~vvN~~ia~~~~~~~~~~~~~ 304 (467)
T KOG1221|consen 235 IITSTYKEP--FPGWIDNLNGPDGVI--------IGYGKGVLRCFLVDPKAVADIIPVDMVVNAMIASAWQHAGNSKEKT 304 (467)
T ss_pred ceeccccCC--CCCccccCCCCceEE--------EEeccceEEEEEEccccccceeeHHHHHHHHHHHHHHHhccCCCCC
Confidence 999998876 344444444555432 223345444566788889999999999999997763211 11 12
Q ss_pred ceEEEeCC-C--CcCHHHHHHHHHHHh
Q 011707 373 FRVFNQFT-E--QFSVNQLAALVTKAG 396 (479)
Q Consensus 373 ~~~~ni~~-~--~~s~~el~~~i~~~~ 396 (479)
..+||+++ . +++|.++.+...+.+
T Consensus 305 ~~IY~~tss~~Np~t~~~~~e~~~~~~ 331 (467)
T KOG1221|consen 305 PPIYHLTSSNDNPVTWGDFIELALRYF 331 (467)
T ss_pred CcEEEecccccCcccHHHHHHHHHHhc
Confidence 45999998 3 699999999999863
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=7e-23 Score=194.70 Aligned_cols=231 Identities=12% Similarity=0.054 Sum_probs=161.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|++|||||+|+||++++++|+++|++|++++|...... .....+. ..+.++.++.+|++|.+
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~----------------~~~~~~~-~~~~~~~~~~~D~~~~~ 63 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAE----------------AAAKVAT-DAGGSVIYLVADVTKED 63 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH----------------HHHHHHH-hcCCceEEEECCCCCHH
Confidence 468999999999999999999999999999988643210 0011111 12346889999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecccccc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~g 235 (479)
+++++++.. ++|+|||+||....... ..++.++..++++|+.|+.++++++ ++.+.+ +||++||...+.
T Consensus 64 ~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~-~~v~~ss~~~~~ 142 (255)
T TIGR01963 64 EIADMIAAAAAEFGGLDILVNNAGIQHVAPIEEFPPEDWDRIIAIMLTSAFHTIRAALPHMKKQGWG-RIINIASAHGLV 142 (255)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCe-EEEEEcchhhcC
Confidence 887766532 58999999997654322 2244456677889999988888877 445666 999999965442
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
.. .....|+.+|.+.+.+++.++.+. +++++++||+.+++|....
T Consensus 143 ~~------------------------~~~~~y~~sk~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~~~~~~~-------- 190 (255)
T TIGR01963 143 AS------------------------PFKSAYVAAKHGLIGLTKVLALEVAAHGITVNAICPGYVRTPLVEK-------- 190 (255)
T ss_pred CC------------------------CCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHHH--------
Confidence 11 225789999999999999887763 8999999999999984211
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeE-------EecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLT-------VYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.+........+. ....+...++++|++|+|++++.++..+......++||++++
T Consensus 191 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~~~~g~~~~~~~g 251 (255)
T TIGR01963 191 ---------------QIADQAKTRGIPEEQVIREVMLPGQPTKRFVTVDEVAETALFLASDAAAGITGQAIVLDGG 251 (255)
T ss_pred ---------------HHHhhhcccCCCchHHHHHHHHccCccccCcCHHHHHHHHHHHcCccccCccceEEEEcCc
Confidence 111111111000 011234557899999999999999987533222349999864
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK09135 pteridine reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.5e-23 Score=193.02 Aligned_cols=230 Identities=17% Similarity=0.098 Sum_probs=157.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++++||||||+||||++++++|+++|++|++++|...... .+....+.......+.++.+|++|
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~---------------~~~~~~~~~~~~~~~~~~~~Dl~~ 68 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYHRSAAEA---------------DALAAELNALRPGSAAALQADLLD 68 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHH---------------HHHHHHHHhhcCCceEEEEcCCCC
Confidence 35689999999999999999999999999999987532110 011111112222468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHHc--CCcceEEEeecccccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKEF--RQECHLVKLGTMGEYG 235 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--g~~~~~V~~SS~~v~g 235 (479)
.+++.++++.. ++|+||||||....... ..+.+++..++++|+.|+.++++++... .....++++++.. +
T Consensus 69 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~~~~~~~~~--~ 146 (249)
T PRK09135 69 PDALPELVAACVAAFGRLDALVNNASSFYPTPLGSITEAQWDDLFASNLKAPFFLSQAAAPQLRKQRGAIVNITDIH--A 146 (249)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhchhHHHHHHHHHHHHhhCCeEEEEEeChh--h
Confidence 99998888742 58999999997543221 1233445678899999999999999642 1112666666522 1
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
. .+..+...|+.+|+++|.+++.+++++ +++++++|||.++||.....
T Consensus 147 ~----------------------~~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~~~~v~pg~~~~~~~~~~-------- 196 (249)
T PRK09135 147 E----------------------RPLKGYPVYCAAKAALEMLTRSLALELAPEVRVNAVAPGAILWPEDGNS-------- 196 (249)
T ss_pred c----------------------CCCCCchhHHHHHHHHHHHHHHHHHHHCCCCeEEEEEeccccCcccccc--------
Confidence 1 134557899999999999999999886 59999999999999975321
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC-CCCCCceEEEeCCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP-AQPGEFRVFNQFTE 381 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~-~~~g~~~~~ni~~~ 381 (479)
+...+......+.++. .+.+++|+++++..++... ...|+ +||++++
T Consensus 197 ----------~~~~~~~~~~~~~~~~---------~~~~~~d~a~~~~~~~~~~~~~~g~--~~~i~~g 244 (249)
T PRK09135 197 ----------FDEEARQAILARTPLK---------RIGTPEDIAEAVRFLLADASFITGQ--ILAVDGG 244 (249)
T ss_pred ----------CCHHHHHHHHhcCCcC---------CCcCHHHHHHHHHHHcCccccccCc--EEEECCC
Confidence 0111222222332211 2235899999997666542 23455 9999984
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-23 Score=198.36 Aligned_cols=245 Identities=17% Similarity=0.093 Sum_probs=170.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+|+||||||+|+||++++++|+++|++|++++|..... +.........+.++.+|++|+
T Consensus 2 ~~k~vlItGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~--------------------~~~~~~~~~~~~~~~~D~~~~ 61 (275)
T PRK08263 2 MEKVWFITGASRGFGRAWTEAALERGDRVVATARDTATL--------------------ADLAEKYGDRLLPLALDVTDR 61 (275)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHH--------------------HHHHHhccCCeeEEEccCCCH
Confidence 467999999999999999999999999999998754321 111111134678889999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccccc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEY 234 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~ 234 (479)
+++.++++.. ++|+||||||....... ..+.+++.+++++|+.++.++++.+ ++.+.+ +||++||.+.+
T Consensus 62 ~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vsS~~~~ 140 (275)
T PRK08263 62 AAVFAAVETAVEHFGRLDIVVNNAGYGLFGMIEEVTESEARAQIDTNFFGALWVTQAVLPYLREQRSG-HIIQISSIGGI 140 (275)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEcChhhc
Confidence 9988877642 68999999998654322 2244567888999999998888876 455555 99999996554
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
.. ......|+.+|++.+.+++.++.+ +|++++++|||.+..+.......
T Consensus 141 ~~------------------------~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~Pg~~~t~~~~~~~~---- 192 (275)
T PRK08263 141 SA------------------------FPMSGIYHASKWALEGMSEALAQEVAEFGIKVTLVEPGGYSTDWAGTSAK---- 192 (275)
T ss_pred CC------------------------CCCccHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCccCCccccccc----
Confidence 32 123578999999999999988876 58999999999887764321000
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceecc-ccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHH
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGY-LDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLA 389 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~ 389 (479)
.... .............. .....+ ++++|++++++.+++.+...++ .++..+ ..+++.++.
T Consensus 193 -----~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~p~dva~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~ 255 (275)
T PRK08263 193 -----RATP-LDAYDTLREELAEQ---------WSERSVDGDPEAAAEALLKLVDAENPPLR--LFLGSGVLDLAKADYE 255 (275)
T ss_pred -----cCCC-chhhhhHHHHHHHH---------HHhccCCCCHHHHHHHHHHHHcCCCCCeE--EEeCchHHHHHHHHHH
Confidence 0000 00001111111110 112345 8899999999999998766553 444333 468889999
Q ss_pred HHHHHH
Q 011707 390 ALVTKA 395 (479)
Q Consensus 390 ~~i~~~ 395 (479)
+.+.+.
T Consensus 256 ~~~~~~ 261 (275)
T PRK08263 256 RRLATW 261 (275)
T ss_pred HHHHHH
Confidence 888875
|
|
| >PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=189.62 Aligned_cols=239 Identities=14% Similarity=0.083 Sum_probs=161.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|.... .+..+.+.. .+..+.++.+|++|
T Consensus 6 ~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~-----------------~~~~~~~~~-~~~~~~~~~~D~~~ 67 (260)
T PRK12823 6 FAGKVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELV-----------------HEVAAELRA-AGGEALALTADLET 67 (260)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHH-----------------HHHHHHHHh-cCCeEEEEEEeCCC
Confidence 568999999999999999999999999999999875310 011111111 13467789999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccC--cccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRS--APYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~--~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
.+++.++++.. ++|+||||||... .+....+..++...+++|+.++..+++.+. +.+.+ +||++||..
T Consensus 68 ~~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~~sS~~ 146 (260)
T PRK12823 68 YAGAQAAMAAAVEAFGRIDVLINNVGGTIWAKPFEEYEEEQIEAEIRRSLFPTLWCCRAVLPHMLAQGGG-AIVNVSSIA 146 (260)
T ss_pred HHHHHHHHHHHHHHcCCCeEEEECCccccCCCChhhCChHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-eEEEEcCcc
Confidence 98888777642 6899999998542 122233455667788999999886665553 45555 899999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.++. +...|+.+|++.+.+++.++.++ |+++++++||+|++|..... .
T Consensus 147 ~~~~--------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---~ 197 (260)
T PRK12823 147 TRGI--------------------------NRVPYSAAKGGVNALTASLAFEYAEHGIRVNAVAPGGTEAPPRRVP---R 197 (260)
T ss_pred ccCC--------------------------CCCccHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccCCcchhhH---H
Confidence 5532 13579999999999999998876 89999999999999842100 0
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~ 382 (479)
.. ..........+..++.....+.++. -+.+++|++++++.++......-.+++|++.++.
T Consensus 198 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg~ 258 (260)
T PRK12823 198 NA---APQSEQEKAWYQQIVDQTLDSSLMK---------RYGTIDEQVAAILFLASDEASYITGTVLPVGGGD 258 (260)
T ss_pred hh---ccccccccccHHHHHHHHhccCCcc---------cCCCHHHHHHHHHHHcCcccccccCcEEeecCCC
Confidence 00 0000000112334444444433322 3457899999999988754332122489987643
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=197.28 Aligned_cols=226 Identities=16% Similarity=0.090 Sum_probs=161.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|+++++..... .+....... .+.++.++.+|++|
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~d 66 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGMKLVLADVQQDAL----------------DRAVAELRA-QGAEVLGVRTDVSD 66 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHH----------------HHHHHHHHh-cCCeEEEEECCCCC
Confidence 4578999999999999999999999999999998753311 111111111 13468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccccc-ccccccchhhhhhHHHHHHHHHHH----HHcCCc-----ceEEEe
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYSM-IDRSRAVFTQHNNVIGTLNVLFAM----KEFRQE-----CHLVKL 228 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~-~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~-----~~~V~~ 228 (479)
.++++++++.. ++|+||||||........ .+++++..++++|+.|+.++++++ .+.+.+ .+||++
T Consensus 67 ~~~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~~~~~~g~iv~~ 146 (287)
T PRK06194 67 AAQVEALADAALERFGAVHLLFNNAGVGAGGLVWENSLADWEWVLGVNLWGVIHGVRAFTPLMLAAAEKDPAYEGHIVNT 146 (287)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCCCCCCeEEEEe
Confidence 99998887743 589999999986543322 344566778999999999987774 333331 389999
Q ss_pred eccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhC-----CceEEeecCeeecCCCC
Q 011707 229 GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG-----IRATDLNQGVVYGVRTD 303 (479)
Q Consensus 229 SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g-----l~~~ivRp~~v~Gp~~~ 303 (479)
||...+... .+...|+.+|++.+.+++.++.+++ ++++++.||.|..+
T Consensus 147 sS~~~~~~~------------------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~~~~irv~~v~pg~i~t~--- 199 (287)
T PRK06194 147 ASMAGLLAP------------------------PAMGIYNVSKHAVVSLTETLYQDLSLVTDQVGASVLCPYFVPTG--- 199 (287)
T ss_pred CChhhccCC------------------------CCCcchHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEeCcccCc---
Confidence 996555321 2357899999999999999988764 55556666554332
Q ss_pred chhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCc
Q 011707 304 ETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQF 383 (479)
Q Consensus 304 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~ 383 (479)
+.....+++..+++++.+.++|++++|++.++... ..+
T Consensus 200 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 237 (287)
T PRK06194 200 -------------------------IWQSERNRPADLANTAPPTRSQLIAQAMSQKAVGS-----------------GKV 237 (287)
T ss_pred -------------------------cccccccCchhcccCccccchhhHHHHHHHhhhhc-----------------cCC
Confidence 22233445666777778889999999998775321 116
Q ss_pred CHHHHHHHHHHH
Q 011707 384 SVNQLAALVTKA 395 (479)
Q Consensus 384 s~~el~~~i~~~ 395 (479)
+..|+++.+.+.
T Consensus 238 s~~dva~~i~~~ 249 (287)
T PRK06194 238 TAEEVAQLVFDA 249 (287)
T ss_pred CHHHHHHHHHHH
Confidence 888999998886
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=191.07 Aligned_cols=244 Identities=15% Similarity=0.096 Sum_probs=166.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|+++++..... .+..+.+.. .+.++.++.+|++|
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l----------------~~~~~~l~~-~~~~~~~~~~Dv~d 66 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGL----------------RQAVNHLRA-EGFDVHGVMCDVRH 66 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCeEEEEeCCCCC
Confidence 5689999999999999999999999999999988754321 111112211 13467889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
.+++.++++.. ++|+||||||....... ..+.+++..++++|+.|+.++++++. +.+.+.+||++||...
T Consensus 67 ~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~p~m~~~~~~g~iv~isS~~~ 146 (275)
T PRK05876 67 REEVTHLADEAFRLLGHVDVVFSNAGIVVGGPIVEMTHDDWRWVIDVDLWGSIHTVEAFLPRLLEQGTGGHVVFTASFAG 146 (275)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCChhh
Confidence 99998887653 58999999997543322 23455677889999999999998875 3442348999999654
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +..+...|+.+|++.+.+.+.++.++ |+++++++||.+.++.....
T Consensus 147 ~~------------------------~~~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~----- 197 (275)
T PRK05876 147 LV------------------------PNAGLGAYGVAKYGVVGLAETLAREVTADGIGVSVLCPMVVETNLVANS----- 197 (275)
T ss_pred cc------------------------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCccccccccch-----
Confidence 42 22346789999999887777777654 89999999999987743210
Q ss_pred hhcccCCCCcccchHHHH-HHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHH
Q 011707 311 LCNRLDYDGVFGTALNRF-CVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLA 389 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~ 389 (479)
... .............+.....+++++++|+|++++.++++. + .|.+. ++....++.
T Consensus 198 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~ai~~~----~--~~~~~-~~~~~~~~~ 255 (275)
T PRK05876 198 ---------------ERIRGAACAQSSTTGSPGPLPLQDDNLGVDDIAQLTADAILAN----R--LYVLP-HAASRASIR 255 (275)
T ss_pred ---------------hhhcCccccccccccccccccccccCCCHHHHHHHHHHHHHcC----C--eEEec-ChhhHHHHH
Confidence 000 000001111122233334568899999999999999753 3 45554 334445555
Q ss_pred HHHHHH
Q 011707 390 ALVTKA 395 (479)
Q Consensus 390 ~~i~~~ 395 (479)
+...+.
T Consensus 256 ~~~~~~ 261 (275)
T PRK05876 256 RRFERI 261 (275)
T ss_pred HHHHHH
Confidence 555544
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-22 Score=191.39 Aligned_cols=237 Identities=12% Similarity=0.057 Sum_probs=160.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|+||||||+|+||.+++++|+++|++|++++|....... ....+.. .+.++..+.+|++|+
T Consensus 3 ~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~----------------~~~~~~~-~~~~~~~~~~Dl~~~ 65 (258)
T PRK12429 3 KGKVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAA----------------AAEALQK-AGGKAIGVAMDVTDE 65 (258)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHH----------------HHHHHHh-cCCcEEEEEcCCCCH
Confidence 57899999999999999999999999999999886442111 1111111 235788999999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCccccc-ccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccccc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAPYSM-IDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEY 234 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~-~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~ 234 (479)
+++.++++.. ++|+||||||........ ....++...+++|+.++.++++.+ ++.+.+ +||++||...+
T Consensus 66 ~~~~~~~~~~~~~~~~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~iss~~~~ 144 (258)
T PRK12429 66 EAINAGIDYAVETFGGVDILVNNAGIQHVAPIEDFPTEKWKKMIAIMLDGAFLTTKAALPIMKAQGGG-RIINMASVHGL 144 (258)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCe-EEEEEcchhhc
Confidence 9998887743 689999999975543222 233345667889999966666555 445555 99999996433
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
. +..+.+.|+.+|++.+.+++.++.+. +++++++|||.+++|...... ...
T Consensus 145 ~------------------------~~~~~~~y~~~k~a~~~~~~~l~~~~~~~~i~v~~~~pg~v~~~~~~~~~--~~~ 198 (258)
T PRK12429 145 V------------------------GSAGKAAYVSAKHGLIGLTKVVALEGATHGVTVNAICPGYVDTPLVRKQI--PDL 198 (258)
T ss_pred c------------------------CCCCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCcchhhhhhh--hhh
Confidence 2 12336789999999999999887764 799999999999998632110 000
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
... .+ ......+... +......+.|++++|++++++.++..... .|+ .|++.++
T Consensus 199 ~~~---~~---~~~~~~~~~~--------~~~~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~--~~~~~~g 254 (258)
T PRK12429 199 AKE---RG---ISEEEVLEDV--------LLPLVPQKRFTTVEEIADYALFLASFAAKGVTGQ--AWVVDGG 254 (258)
T ss_pred ccc---cC---CChHHHHHHH--------HhccCCccccCCHHHHHHHHHHHcCccccCccCC--eEEeCCC
Confidence 000 00 0000111111 11223346799999999999999876443 344 8988865
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=193.32 Aligned_cols=233 Identities=16% Similarity=0.070 Sum_probs=164.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.++++.|+++|++|+++++..... .........++.++.+|++|
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------------------~~~~~~~~~~~~~~~~D~~~ 63 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGARVVIADIKPARA--------------------RLAALEIGPAAIAVSLDVTR 63 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHHHH--------------------HHHHHHhCCceEEEEccCCC
Confidence 4578999999999999999999999999999998754311 11111112458889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeecc-c
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTM-G 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~-~ 232 (479)
.++++++++.. .+|+||||||...... ...+.+++...+++|+.++.++++++... +.+.+||++||. +
T Consensus 64 ~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~ 143 (257)
T PRK07067 64 QDSIDRIVAAAVERFGGIDILFNNAALFDMAPILDISRDSYDRLFAVNVKGLFFLMQAVARHMVEQGRGGKIINMASQAG 143 (257)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhhhHHHHHHHHHHHHHhcCCCcEEEEeCCHHh
Confidence 99998888753 6899999999764322 22345567788999999999999998643 222389999994 3
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.++. .+...|+.+|++.+.+++.++.+ .|+++++++||.|+++..+..
T Consensus 144 ~~~~-------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~---- 194 (257)
T PRK07067 144 RRGE-------------------------ALVSHYCATKAAVISYTQSAALALIRHGINVNAIAPGVVDTPMWDQV---- 194 (257)
T ss_pred CCCC-------------------------CCCchhhhhHHHHHHHHHHHHHHhcccCeEEEEEeeCcccchhhhhh----
Confidence 3321 24678999999999999998886 589999999999999853210
Q ss_pred hhhcccCCCCcccchHHHHHHHHh---cCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAA---VGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
...+.... .+.....++.....+.+.+++|+|++++.++......-.+++|++.++
T Consensus 195 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~~~g~~~~v~gg 253 (257)
T PRK07067 195 ----------------DALFARYENRPPGEKKRLVGEAVPLGRMGVPDDLTGMALFLASADADYIVAQTYNVDGG 253 (257)
T ss_pred ----------------hhhhhhccCCCHHHHHHHHhhcCCCCCccCHHHHHHHHHHHhCcccccccCcEEeecCC
Confidence 00000000 000001122233456899999999999999986543222249999875
|
|
| >PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-22 Score=187.39 Aligned_cols=229 Identities=13% Similarity=0.072 Sum_probs=162.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+|+++|+++|++|+++.+....... ....... ..+.++.++.+|+.|
T Consensus 4 ~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~D~~~ 67 (249)
T PRK12825 4 LMGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAE---------------ELVEAVE-ALGRRAQAVQADVTD 67 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHH---------------HHHHHHH-hcCCceEEEECCcCC
Confidence 346899999999999999999999999999887665331100 1111111 123568899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v 233 (479)
++++.+++++. .+|+|||+||....... ..+.+++...+++|+.++.++++.+ ++.+.+ +||++||...
T Consensus 68 ~~~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~i~~SS~~~ 146 (249)
T PRK12825 68 KAALEAAVAAAVERFGRIDILVNNAGIFEDKPLADMSDDEWDEVIDVNLSGVFHLLRAVVPPMRKQRGG-RIVNISSVAG 146 (249)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEECcccc
Confidence 99998887643 68999999996543221 2234456778899999999999887 445655 9999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+.. ......|+.+|.+.+.+++.++++ .|++++++|||.++|+.....
T Consensus 147 ~~~------------------------~~~~~~y~~sK~~~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~----- 197 (249)
T PRK12825 147 LPG------------------------WPGRSNYAAAKAGLVGLTKALARELAEYGITVNMVAPGDIDTDMKEAT----- 197 (249)
T ss_pred CCC------------------------CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCccCCccccc-----
Confidence 522 123578999999999999988876 589999999999999864321
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
........ .. ......+++++|+++++..++.+......+++|++.++
T Consensus 198 -------------~~~~~~~~---~~-------~~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~i~~g 245 (249)
T PRK12825 198 -------------IEEAREAK---DA-------ETPLGRSGTPEDIARAVAFLCSDASDYITGQVIEVTGG 245 (249)
T ss_pred -------------cchhHHhh---hc-------cCCCCCCcCHHHHHHHHHHHhCccccCcCCCEEEeCCC
Confidence 00111110 00 01223489999999999999976543322349999874
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=191.73 Aligned_cols=236 Identities=14% Similarity=0.116 Sum_probs=161.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccC-CCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT-GKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~ 164 (479)
+|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.... ..++.++.+|++|.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~~D~~~~ 65 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGYRVAVADINSEKA----------------ANVAQEINAEYGEGMAYGFGADATSE 65 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHHhcCCceeEEEEccCCCH
Confidence 57899999999999999999999999999998754311 11111111111 14688999999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc-cc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM-GE 233 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~-~v 233 (479)
+++.+++++. ++|+||||||...... ...+++++...+++|+.|+.++++++.+ .+...+||++||. +.
T Consensus 66 ~~i~~~~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~~~iv~~ss~~~~ 145 (259)
T PRK12384 66 QSVLALSRGVDEIFGRVDLLVYNAGIAKAAFITDFQLGDFDRSLQVNLVGYFLCAREFSRLMIRDGIQGRIIQINSKSGK 145 (259)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCcEEEEecCcccc
Confidence 9888777642 6899999999754332 2234456778899999999988887754 3422389999984 33
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
++. .....|+.+|++.+.+++.++.+ +|++++++|||.++++....
T Consensus 146 ~~~-------------------------~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~pg~~~~~~~~~------ 194 (259)
T PRK12384 146 VGS-------------------------KHNSGYSAAKFGGVGLTQSLALDLAEYGITVHSLMLGNLLKSPMFQ------ 194 (259)
T ss_pred cCC-------------------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCcccchhhh------
Confidence 432 22568999999999999998865 58999999999988764321
Q ss_pred hhcccCCCCcccchHHHHHHHHhc--CCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAV--GHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
..+..+...... +.....+.++...+.+++++|++++++.++.+... .|+ +||+.++.
T Consensus 195 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dv~~~~~~l~~~~~~~~~G~--~~~v~~g~ 256 (259)
T PRK12384 195 ------------SLLPQYAKKLGIKPDEVEQYYIDKVPLKRGCDYQDVLNMLLFYASPKASYCTGQ--SINVTGGQ 256 (259)
T ss_pred ------------hhhHHHHHhcCCChHHHHHHHHHhCcccCCCCHHHHHHHHHHHcCcccccccCc--eEEEcCCE
Confidence 111111111000 00001112233456789999999999988875433 344 89998753
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.3e-22 Score=186.82 Aligned_cols=232 Identities=14% Similarity=0.032 Sum_probs=164.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... ......+.. .+.++.++.+|++|
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~Dl~~ 66 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDA----------------AATAELVEA-AGGKARARQVDVRD 66 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCeEEEEECCCCC
Confidence 3578999999999999999999999999999998864311 111111111 12458889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
.+++.++++.. .+|+|||+||....... ..+++++...+++|+.++.++++++. +.+.+ +||++||...
T Consensus 67 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~ii~~ss~~~ 145 (251)
T PRK12826 67 RAALKAAVAAGVEDFGRLDILVANAGIFPLTPFAEMDDEQWERVIDVNLTGTFLLTQAALPALIRAGGG-RIVLTSSVAG 145 (251)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc-EEEEEechHh
Confidence 99998888643 68999999987654222 23445567789999999999998874 34555 8999999755
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
++. +......|+.+|.+++.+++.++.+ .|++++++|||+++||......
T Consensus 146 ~~~-----------------------~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~~~~---- 198 (251)
T PRK12826 146 PRV-----------------------GYPGLAHYAASKAGLVGFTRALALELAARNITVNSVHPGGVDTPMAGNLG---- 198 (251)
T ss_pred hcc-----------------------CCCCccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCCCCcchhhhcC----
Confidence 411 1233578999999999999998776 3899999999999999643210
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCc
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQF 383 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~ 383 (479)
. ..+...+....+ ...+++++|++.++..++..+...-.+++|++.++..
T Consensus 199 -----------~---~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g~~ 248 (251)
T PRK12826 199 -----------D---AQWAEAIAAAIP---------LGRLGEPEDIAAAVLFLASDEARYITGQTLPVDGGAT 248 (251)
T ss_pred -----------c---hHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCccccCcCCcEEEECCCcc
Confidence 0 011111212212 1257999999999999887654321224999987543
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=187.40 Aligned_cols=243 Identities=16% Similarity=0.158 Sum_probs=171.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccC-CCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT-GKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~ 162 (479)
+++|++|||||+|+||.++++.|+++|++|++++|...... +....+.... ..++.++.+|++
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~----------------~~~~~l~~~~~~~~~~~~~~Dl~ 68 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLA----------------AAAEEIEALKGAGAVRYEPADVT 68 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHH----------------HHHHHHHhccCCCceEEEEcCCC
Confidence 56799999999999999999999999999999987543211 1111111111 246888999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~ 231 (479)
|++++.++++.. ++|+||||||.... .....+.+++..++++|+.++.++++++.+. +.+ +||++||.
T Consensus 69 ~~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g-~iv~~sS~ 147 (276)
T PRK05875 69 DEDQVARAVDAATAWHGRLHGVVHCAGGSETIGPITQIDSDAWRRTVDLNVNGTMYVLKHAARELVRGGGG-SFVGISSI 147 (276)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEech
Confidence 999888887753 68999999996432 1222344556778999999999999877543 334 89999997
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+.. ..+.+.|+.+|++.|.+++.++.++ +++++++|||.+.++......
T Consensus 148 ~~~~~------------------------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~Pg~v~t~~~~~~~-- 201 (276)
T PRK05875 148 AASNT------------------------HRWFGAYGVTKSAVDHLMKLAADELGPSWVRVNSIRPGLIRTDLVAPIT-- 201 (276)
T ss_pred hhcCC------------------------CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCccCCccccccc--
Confidence 65421 2336789999999999999998875 699999999998776421100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCC--CCceEEEeCCC-Cc--
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP--GEFRVFNQFTE-QF-- 383 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~--g~~~~~ni~~~-~~-- 383 (479)
. ........... .....+++++|++++++.++.++... |+ +|++.++ .+
T Consensus 202 -------------~--~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~~~~g~--~~~~~~g~~~~~ 255 (276)
T PRK05875 202 -------------E--SPELSADYRAC---------TPLPRVGEVEDVANLAMFLLSDAASWITGQ--VINVDGGHMLRR 255 (276)
T ss_pred -------------c--CHHHHHHHHcC---------CCCCCCcCHHHHHHHHHHHcCchhcCcCCC--EEEECCCeeccC
Confidence 0 00111111111 12234678999999999999876543 54 9999874 33
Q ss_pred --CHHHHHHHHHHH
Q 011707 384 --SVNQLAALVTKA 395 (479)
Q Consensus 384 --s~~el~~~i~~~ 395 (479)
+..|+++.+.+.
T Consensus 256 ~~~~~~~~~~~~~~ 269 (276)
T PRK05875 256 GPDFSSMLEPVFGA 269 (276)
T ss_pred CccHHHHHHHHhhH
Confidence 777777777654
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=187.05 Aligned_cols=239 Identities=15% Similarity=0.077 Sum_probs=169.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|++|||||+|+||.+++++|+++|++|++++|...... +..+ .+.+.++.++.+|++|.+
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~~v~~~~r~~~~~~----------------~~~~---~~~~~~~~~~~~D~~~~~ 62 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGDRVLALDIDAAALA----------------AFAD---ALGDARFVPVACDLTDAA 62 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHHH----------------HHHH---HhcCCceEEEEecCCCHH
Confidence 578999999999999999999999999999987543210 0111 112346888999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccccc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~g 235 (479)
++.++++.. ++|+|||+||...... ...+++++...+.+|+.++.++++++. +.+.+ +||++||...+.
T Consensus 63 ~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~ 141 (257)
T PRK07074 63 SLAAALANAAAERGPVDVLVANAGAARAASLHDTTPASWRADNALNLEAAYLCVEAVLEGMLKRSRG-AVVNIGSVNGMA 141 (257)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe-EEEEEcchhhcC
Confidence 998877643 5899999999754322 223445566778899999999998884 33444 899999953221
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
. .....|+.+|++.+.+++.++.++ |+++++++||.++++......
T Consensus 142 ~-------------------------~~~~~y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~------ 190 (257)
T PRK07074 142 A-------------------------LGHPAYSAAKAGLIHYTKLLAVEYGRFGIRANAVAPGTVKTQAWEARV------ 190 (257)
T ss_pred C-------------------------CCCcccHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCCcchhhccc------
Confidence 1 013479999999999999998775 799999999999887532100
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC-CcCHHHHHHH
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE-QFSVNQLAAL 391 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~-~~s~~el~~~ 391 (479)
. ....+...... .....+|++++|++++++.++........++++++.++ .....|+++.
T Consensus 191 ---------~-~~~~~~~~~~~---------~~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g~~~~~~~~~~~ 251 (257)
T PRK07074 191 ---------A-ANPQVFEELKK---------WYPLQDFATPDDVANAVLFLASPAARAITGVCLPVDGGLTAGNREMART 251 (257)
T ss_pred ---------c-cChHHHHHHHh---------cCCCCCCCCHHHHHHHHHHHcCchhcCcCCcEEEeCCCcCcCChhhhhh
Confidence 0 00112221111 12235899999999999999975433222248888884 5789999988
Q ss_pred HHH
Q 011707 392 VTK 394 (479)
Q Consensus 392 i~~ 394 (479)
+.+
T Consensus 252 ~~~ 254 (257)
T PRK07074 252 LTL 254 (257)
T ss_pred hcc
Confidence 765
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-21 Score=186.07 Aligned_cols=230 Identities=17% Similarity=0.182 Sum_probs=159.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..++|+||||||||+||++++++|+++|++|+++.|..... ..... ...++.++.+|++
T Consensus 14 ~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R~~~~~--------------------~~~~~-~~~~~~~~~~Dl~ 72 (251)
T PLN00141 14 NVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVRDVDKA--------------------KTSLP-QDPSLQIVRADVT 72 (251)
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEecCHHHH--------------------HHhcc-cCCceEEEEeeCC
Confidence 44678999999999999999999999999999988754311 00000 1236889999999
Q ss_pred C-hHHHHHHh-hhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-
Q 011707 163 D-FEFLSESF-KSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI- 239 (479)
Q Consensus 163 d-~~~~~~~~-~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~- 239 (479)
| .+.+.+.+ . ++|+|||++|.... .++ ...+++|..++.++++++++.+.+ +||++||.++||....
T Consensus 73 d~~~~l~~~~~~--~~d~vi~~~g~~~~----~~~---~~~~~~n~~~~~~ll~a~~~~~~~-~iV~iSS~~v~g~~~~~ 142 (251)
T PLN00141 73 EGSDKLVEAIGD--DSDAVICATGFRRS----FDP---FAPWKVDNFGTVNLVEACRKAGVT-RFILVSSILVNGAAMGQ 142 (251)
T ss_pred CCHHHHHHHhhc--CCCEEEECCCCCcC----CCC---CCceeeehHHHHHHHHHHHHcCCC-EEEEEccccccCCCccc
Confidence 8 46666666 4 79999999885321 111 123578999999999999998887 9999999999985421
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCC
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDG 319 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g 319 (479)
+..+.+ ....+...|..+|..+|.+++ +.|++++++||+.+++....
T Consensus 143 ~~~~~~-------------~~~~~~~~~~~~k~~~e~~l~----~~gi~~~iirpg~~~~~~~~---------------- 189 (251)
T PLN00141 143 ILNPAY-------------IFLNLFGLTLVAKLQAEKYIR----KSGINYTIVRPGGLTNDPPT---------------- 189 (251)
T ss_pred ccCcch-------------hHHHHHHHHHHHHHHHHHHHH----hcCCcEEEEECCCccCCCCC----------------
Confidence 111110 011122344556888887654 46899999999999976421
Q ss_pred cccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC---C-CcCHHHHHHHHHH
Q 011707 320 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT---E-QFSVNQLAALVTK 394 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~---~-~~s~~el~~~i~~ 394 (479)
+ .+.+.........+++.+|+|++++.++..+...+. ++.+.+ . ..++.++...+++
T Consensus 190 ---------------~-~~~~~~~~~~~~~~i~~~dvA~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 250 (251)
T PLN00141 190 ---------------G-NIVMEPEDTLYEGSISRDQVAEVAVEALLCPESSYK--VVEIVARADAPKRSYKDLFASIKQ 250 (251)
T ss_pred ---------------c-eEEECCCCccccCcccHHHHHHHHHHHhcChhhcCc--EEEEecCCCCCchhHHHHHHHhhc
Confidence 0 011111111223579999999999999988766554 777765 2 3788888877764
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-21 Score=197.53 Aligned_cols=239 Identities=13% Similarity=0.069 Sum_probs=161.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhc-----ccCCCceeEE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK-----SLTGKNIELY 157 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~v~~v 157 (479)
..++++||||||+|+||++++++|+++|++|++++|....... +.+.+.... .....++.++
T Consensus 77 ~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~-------------l~~~l~~~~L~~~Ga~~~~~v~iV 143 (576)
T PLN03209 77 TKDEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAES-------------LVQSVKQMKLDVEGTQPVEKLEIV 143 (576)
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHH-------------HHHHhhhhccccccccccCceEEE
Confidence 3468899999999999999999999999999999886432110 000000000 0011358899
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCC
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTP 237 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~ 237 (479)
.+|++|.+++.+++. ++|+||||+|..... ..++...+++|+.|+.+++++|++.|++ +||++||.+++...
T Consensus 144 ~gDLtD~esI~~aLg--giDiVVn~AG~~~~~-----v~d~~~~~~VN~~Gt~nLl~Aa~~agVg-RIV~VSSiga~~~g 215 (576)
T PLN03209 144 ECDLEKPDQIGPALG--NASVVICCIGASEKE-----VFDVTGPYRIDYLATKNLVDAATVAKVN-HFILVTSLGTNKVG 215 (576)
T ss_pred EecCCCHHHHHHHhc--CCCEEEEcccccccc-----ccchhhHHHHHHHHHHHHHHHHHHhCCC-EEEEEccchhcccC
Confidence 999999999999988 899999999864311 1123456789999999999999999887 99999997653111
Q ss_pred CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCC
Q 011707 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDY 317 (479)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~ 317 (479)
. .+. .......|...|..+|+.+. .+||++++||||.++++.+...
T Consensus 216 ~---p~~---------------~~~sk~~~~~~KraaE~~L~----~sGIrvTIVRPG~L~tp~d~~~------------ 261 (576)
T PLN03209 216 F---PAA---------------ILNLFWGVLCWKRKAEEALI----ASGLPYTIVRPGGMERPTDAYK------------ 261 (576)
T ss_pred c---ccc---------------chhhHHHHHHHHHHHHHHHH----HcCCCEEEEECCeecCCccccc------------
Confidence 0 000 01124567788888888764 4699999999999998753210
Q ss_pred CCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC-CCCCceEEEeCCCC----cCHHHHHHHH
Q 011707 318 DGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA-QPGEFRVFNQFTEQ----FSVNQLAALV 392 (479)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~-~~g~~~~~ni~~~~----~s~~el~~~i 392 (479)
....+.+...+.....++..+|||++++.++.++. ..++ +|.+.++. ..+.++++.+
T Consensus 262 ----------------~t~~v~~~~~d~~~gr~isreDVA~vVvfLasd~~as~~k--vvevi~~~~~p~~~~~~~~~~i 323 (576)
T PLN03209 262 ----------------ETHNLTLSEEDTLFGGQVSNLQVAELMACMAKNRRLSYCK--VVEVIAETTAPLTPMEELLAKI 323 (576)
T ss_pred ----------------cccceeeccccccCCCccCHHHHHHHHHHHHcCchhccce--EEEEEeCCCCCCCCHHHHHHhc
Confidence 00111111111122245889999999999998764 4454 99988743 5555555544
Q ss_pred HH
Q 011707 393 TK 394 (479)
Q Consensus 393 ~~ 394 (479)
-.
T Consensus 324 p~ 325 (576)
T PLN03209 324 PS 325 (576)
T ss_pred cc
Confidence 43
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-22 Score=191.89 Aligned_cols=234 Identities=15% Similarity=0.072 Sum_probs=158.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+|+||||||+|+||.+++++|+++|++|++++|.... .+.+....+.++..+.+|++|.
T Consensus 3 ~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~--------------------~~~l~~~~~~~~~~~~~D~~d~ 62 (277)
T PRK06180 3 SMKTWLITGVSSGFGRALAQAALAAGHRVVGTVRSEAA--------------------RADFEALHPDRALARLLDVTDF 62 (277)
T ss_pred CCCEEEEecCCChHHHHHHHHHHhCcCEEEEEeCCHHH--------------------HHHHHhhcCCCeeEEEccCCCH
Confidence 46889999999999999999999999999999885431 1122222234688899999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccccc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEY 234 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~ 234 (479)
+++.++++.. ++|+||||||....... ..+.+++..++++|+.|+.++++++. +.+.+ +||++||.+.+
T Consensus 63 ~~~~~~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~iSS~~~~ 141 (277)
T PRK06180 63 DAIDAVVADAEATFGPIDVLVNNAGYGHEGAIEESPLAEMRRQFEVNVFGAVAMTKAVLPGMRARRRG-HIVNITSMGGL 141 (277)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCC-EEEEEeccccc
Confidence 9988887743 58999999997654322 22444567789999999999999864 33445 89999996543
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
. +..+...|+.+|++.|.+++.++.+ +|++++++|||.+.++.......
T Consensus 142 ~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~~~~~~~---- 193 (277)
T PRK06180 142 I------------------------TMPGIGYYCGSKFALEGISESLAKEVAPFGIHVTAVEPGSFRTDWAGRSMV---- 193 (277)
T ss_pred C------------------------CCCCcchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEecCCcccCccccccc----
Confidence 2 1123678999999999999998876 48999999999998775322100
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
...... ... ............ . .....+..++|++++++.+++.+.... .|.++..
T Consensus 194 ---~~~~~~-~~~-~~~~~~~~~~~~---~---~~~~~~~~~~dva~~~~~~l~~~~~~~---~~~~g~~ 249 (277)
T PRK06180 194 ---RTPRSI-ADY-DALFGPIRQARE---A---KSGKQPGDPAKAAQAILAAVESDEPPL---HLLLGSD 249 (277)
T ss_pred ---cCCCCc-HhH-HHHHHHHHHHHH---h---hccCCCCCHHHHHHHHHHHHcCCCCCe---eEeccHH
Confidence 000000 000 011111100000 0 011245689999999999998765542 3544443
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-22 Score=186.78 Aligned_cols=232 Identities=13% Similarity=0.013 Sum_probs=161.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+|+++|+++|++|++++|..... .+..+... .+.++.++.+|++|
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~----------------~~~~~~~~--~~~~~~~~~~D~~~ 64 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAA----------------ERVAAAIA--AGGRAFARQGDVGS 64 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHH----------------HHHHHHHh--cCCeEEEEEcCCCC
Confidence 4688999999999999999999999999999998754311 11111111 23468899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccc-
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMG- 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~- 232 (479)
++++.++++.. ++|+||||||...... ...+.+++..++++|+.++.++.+.+ ++.+.+ +||++||..
T Consensus 65 ~~~~~~~~~~i~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~ii~~sS~~~ 143 (252)
T PRK06138 65 AEAVEALVDFVAARWGRLDVLVNNAGFGCGGTVVTTDEADWDAVMRVNVGGVFLWAKYAIPIMQRQGGG-SIVNTASQLA 143 (252)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHHHHhcCCe-EEEEECChhh
Confidence 99998887643 6999999999754332 22345566778999999998877765 445555 899999964
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.++. .....|+.+|++.+.+++.++.++ |++++++|||.++++......
T Consensus 144 ~~~~-------------------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~--- 195 (252)
T PRK06138 144 LAGG-------------------------RGRAAYVASKGAIASLTRAMALDHATDGIRVNAVAPGTIDTPYFRRIF--- 195 (252)
T ss_pred ccCC-------------------------CCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEECCccCcchhhhh---
Confidence 3332 235789999999999999998775 899999999999988532100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. ......+.....+. .....|++++|++++++.++.++.....+..+.+.++
T Consensus 196 --------~~---~~~~~~~~~~~~~~--------~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~g 248 (252)
T PRK06138 196 --------AR---HADPEALREALRAR--------HPMNRFGTAEEVAQAALFLASDESSFATGTTLVVDGG 248 (252)
T ss_pred --------cc---ccChHHHHHHHHhc--------CCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCC
Confidence 00 00001111111111 1122478999999999999987654322237777654
|
|
| >PRK07775 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-21 Score=185.49 Aligned_cols=229 Identities=14% Similarity=0.127 Sum_probs=158.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
..+|++|||||+|+||.+++++|+++|++|++++|..... .+....... .+.++.++.+|++|
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~Dl~~ 70 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGFPVALGARRVEKC----------------EELVDKIRA-DGGEAVAFPLDVTD 70 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCeEEEEECCCCC
Confidence 4568999999999999999999999999999888753211 011111111 12467888999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
.+++.++++.. ++|+||||||....... ..+++++...+++|+.++.++++++.. .+.+ +||++||...
T Consensus 71 ~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~l~~~~~~~~g-~iv~isS~~~ 149 (274)
T PRK07775 71 PDSVKSFVAQAEEALGEIEVLVSGAGDTYFGKLHEISTEQFESQVQIHLVGANRLATAVLPGMIERRRG-DLIFVGSDVA 149 (274)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-eEEEECChHh
Confidence 99998888743 68999999997543222 223445667789999999999988753 3444 8999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+... .+...|+.+|++.|.+++.++++. |++++++|||.+.++......
T Consensus 150 ~~~~------------------------~~~~~Y~~sK~a~~~l~~~~~~~~~~~gi~v~~v~pG~~~t~~~~~~~---- 201 (274)
T PRK07775 150 LRQR------------------------PHMGAYGAAKAGLEAMVTNLQMELEGTGVRASIVHPGPTLTGMGWSLP---- 201 (274)
T ss_pred cCCC------------------------CCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCCcccCcccccCC----
Confidence 5321 235689999999999999998775 899999999987554211000
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQF 379 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~ 379 (479)
...+..++...... + +.....++|++|+|++++.+++++. .+. +||+.
T Consensus 202 -----------~~~~~~~~~~~~~~------~-~~~~~~~~~~~dva~a~~~~~~~~~-~~~--~~~~~ 249 (274)
T PRK07775 202 -----------AEVIGPMLEDWAKW------G-QARHDYFLRASDLARAITFVAETPR-GAH--VVNME 249 (274)
T ss_pred -----------hhhhhHHHHHHHHh------c-ccccccccCHHHHHHHHHHHhcCCC-CCC--eeEEe
Confidence 00111222221111 1 1223568999999999999998753 333 78875
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-21 Score=184.85 Aligned_cols=231 Identities=13% Similarity=0.054 Sum_probs=156.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+||||.+++++|+++|++|++++|..... .......+.. .+.++.++.+|++|
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~---------------~~~~~~~l~~-~~~~~~~~~~D~~~ 67 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPR---------------ANKVVAEIEA-AGGRASAVGADLTD 67 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHh---------------HHHHHHHHHh-cCCceEEEEcCCCC
Confidence 4578999999999999999999999999999988753211 0011111111 13467889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccCC
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGTP 237 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~~ 237 (479)
++++.++++.. ++|+||||||..... .. ++...+++|+.|+.++++++.+.- .+.+||++||.......
T Consensus 68 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~--~~---~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~ 142 (248)
T PRK07806 68 EESVAALMDTAREEFGGLDALVLNASGGMES--GM---DEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVTSHQAHFIP 142 (248)
T ss_pred HHHHHHHHHHHHHhCCCCcEEEECCCCCCCC--CC---CcceeeEeeeHHHHHHHHHHHhhccCCceEEEEeCchhhcCc
Confidence 99988877642 589999999853211 11 234567899999999999998642 12389999995432111
Q ss_pred CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
. .+ +......|+.||+++|.+++.++.+ .|+++++++|+.+-++...
T Consensus 143 ~---~~----------------~~~~~~~Y~~sK~a~e~~~~~l~~~~~~~~i~v~~v~pg~~~~~~~~----------- 192 (248)
T PRK07806 143 T---VK----------------TMPEYEPVARSKRAGEDALRALRPELAEKGIGFVVVSGDMIEGTVTA----------- 192 (248)
T ss_pred c---cc----------------CCccccHHHHHHHHHHHHHHHHHHHhhccCeEEEEeCCccccCchhh-----------
Confidence 0 00 1112578999999999999998876 4799999999887665311
Q ss_pred cCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCC
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQ 382 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~ 382 (479)
.+......+ . +.........+++++|++++++.+++.....|+ +|+++++.
T Consensus 193 ------------~~~~~~~~~-~--~~~~~~~~~~~~~~~dva~~~~~l~~~~~~~g~--~~~i~~~~ 243 (248)
T PRK07806 193 ------------TLLNRLNPG-A--IEARREAAGKLYTVSEFAAEVARAVTAPVPSGH--IEYVGGAD 243 (248)
T ss_pred ------------hhhccCCHH-H--HHHHHhhhcccCCHHHHHHHHHHHhhccccCcc--EEEecCcc
Confidence 111000000 0 000001123789999999999999997655666 99999854
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-22 Score=187.16 Aligned_cols=228 Identities=12% Similarity=0.105 Sum_probs=162.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++|
T Consensus 8 ~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~i~~-~~~~~~~~~~D~~~ 70 (255)
T PRK07523 8 LTGRRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKL----------------AAAAESLKG-QGLSAHALAFDVTD 70 (255)
T ss_pred CCCCEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHH----------------HHHHHHHHh-cCceEEEEEccCCC
Confidence 5689999999999999999999999999999998754311 111111111 13468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~v 233 (479)
.++++++++.. .+|+||||||...... .....+++..++++|+.++.++++++.+. +.+ +||++||...
T Consensus 71 ~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g-~iv~iss~~~ 149 (255)
T PRK07523 71 HDAVRAAIDAFEAEIGPIDILVNNAGMQFRTPLEDFPADAFERLLRTNISSVFYVGQAVARHMIARGAG-KIINIASVQS 149 (255)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCe-EEEEEccchh
Confidence 99998888753 5899999999764332 22345566788999999999999988653 445 9999998543
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
.. +......|+.+|.+.+.+++.++.+ +|++++++|||.+.++.....
T Consensus 150 ~~------------------------~~~~~~~y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~----- 200 (255)
T PRK07523 150 AL------------------------ARPGIAPYTATKGAVGNLTKGMATDWAKHGLQCNAIAPGYFDTPLNAAL----- 200 (255)
T ss_pred cc------------------------CCCCCccHHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcccCchhhhh-----
Confidence 21 2234678999999999999999875 489999999999998853210
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
+. ...+...+.... ....+..++|+|.+++.++..... .|+ ++++.++
T Consensus 201 ----------~~--~~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~~~~G~--~i~~~gg 250 (255)
T PRK07523 201 ----------VA--DPEFSAWLEKRT---------PAGRWGKVEELVGACVFLASDASSFVNGH--VLYVDGG 250 (255)
T ss_pred ----------cc--CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCchhcCccCc--EEEECCC
Confidence 00 011111111111 123577899999999999976443 344 8888874
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.1e-21 Score=182.94 Aligned_cols=224 Identities=18% Similarity=0.128 Sum_probs=160.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|...... +....... ...++..+.+|++|
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~----------------~~~~~~~~-~~~~~~~~~~Dl~~ 66 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAE----------------RVAKQIVA-DGGTAIAVQVDVSD 66 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH----------------HHHHHHHh-cCCcEEEEEcCCCC
Confidence 46789999999999999999999999999999988543210 11111111 12357788999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCc----ccccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeec
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSA----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGT 230 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS 230 (479)
.++++++++.. .+|+||||||.... .....+..++...+++|+.++.++++++... +.+ +||++||
T Consensus 67 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS 145 (250)
T PRK07774 67 PDSAKAMADATVSAFGGIDYLVNNAAIYGGMKLDLLITVPWDYYKKFMSVNLDGALVCTRAVYKHMAKRGGG-AIVNQSS 145 (250)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCcCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCc-EEEEEec
Confidence 99888877643 58999999997531 1112234456778899999999999988753 334 9999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
...|. +.+.|+.+|++.|.+++.+++++ |+++++++||.+..+.....
T Consensus 146 ~~~~~---------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~-- 196 (250)
T PRK07774 146 TAAWL---------------------------YSNFYGLAKVGLNGLTQQLARELGGMNIRVNAIAPGPIDTEATRTV-- 196 (250)
T ss_pred ccccC---------------------------CccccHHHHHHHHHHHHHHHHHhCccCeEEEEEecCcccCcccccc--
Confidence 76552 24679999999999999998875 79999999999877753210
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
....+.....++.+.. -+.+++|++++++.++..... .|+ +||+.++
T Consensus 197 ----------------~~~~~~~~~~~~~~~~---------~~~~~~d~a~~~~~~~~~~~~~~~g~--~~~v~~g 245 (250)
T PRK07774 197 ----------------TPKEFVADMVKGIPLS---------RMGTPEDLVGMCLFLLSDEASWITGQ--IFNVDGG 245 (250)
T ss_pred ----------------CCHHHHHHHHhcCCCC---------CCcCHHHHHHHHHHHhChhhhCcCCC--EEEECCC
Confidence 0112333333333221 245789999999999876432 444 9999874
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-21 Score=187.14 Aligned_cols=232 Identities=16% Similarity=0.149 Sum_probs=164.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.++++.|+++|++|++.++..... ...+..+.+.. .+.++.++.+|++
T Consensus 52 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~--------------~~~~~~~~~~~-~~~~~~~~~~Dl~ 116 (300)
T PRK06128 52 RLQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQ--------------DAAEVVQLIQA-EGRKAVALPGDLK 116 (300)
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchH--------------HHHHHHHHHHH-cCCeEEEEecCCC
Confidence 45789999999999999999999999999998876532210 00111111111 2346788999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEY 234 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~ 234 (479)
|.+++++++++. ++|+||||||..... ....+.+++..++++|+.|+.++++++... ..+.+||++||...|
T Consensus 117 ~~~~v~~~~~~~~~~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~sS~~~~ 196 (300)
T PRK06128 117 DEAFCRQLVERAVKELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTGSIQSY 196 (300)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEECCcccc
Confidence 999888887643 699999999974322 223355677889999999999999999753 112389999997766
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
... .....|+.||++.+.+++.++.+ .|+++++++||.|.+|.....
T Consensus 197 ~~~------------------------~~~~~Y~asK~a~~~~~~~la~el~~~gI~v~~v~PG~i~t~~~~~~------ 246 (300)
T PRK06128 197 QPS------------------------PTLLDYASTKAAIVAFTKALAKQVAEKGIRVNAVAPGPVWTPLQPSG------ 246 (300)
T ss_pred CCC------------------------CCchhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEECcCcCCCcccC------
Confidence 321 23567999999999999999887 489999999999999853210
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
+ .....+..+... .....+.+.+|++.+++.++..... .|+ +|++.++
T Consensus 247 -------~----~~~~~~~~~~~~---------~p~~r~~~p~dva~~~~~l~s~~~~~~~G~--~~~v~gg 296 (300)
T PRK06128 247 -------G----QPPEKIPDFGSE---------TPMKRPGQPVEMAPLYVLLASQESSYVTGE--VFGVTGG 296 (300)
T ss_pred -------C----CCHHHHHHHhcC---------CCCCCCcCHHHHHHHHHHHhCccccCccCc--EEeeCCC
Confidence 0 001112222111 1223567899999999998876443 354 9999875
|
|
| >PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-21 Score=182.99 Aligned_cols=233 Identities=16% Similarity=0.098 Sum_probs=160.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++++||||||+|+||++++++|+++|++|+++.+..... .......... .+.++..+.+|+++
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~D~~~ 67 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEE---------------MNETLKMVKE-NGGEGIGVLADVST 67 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHH---------------HHHHHHHHHH-cCCeeEEEEeccCC
Confidence 4578999999999999999999999999998766532211 1111111111 12357788999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccccc-ccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccccC
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYSM-IDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEYGT 236 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~-~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~g~ 236 (479)
.+++.++++.. ++|+||||||........ .+..++...+++|+.++.++++++.+. ....+||++||...+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~- 146 (252)
T PRK06077 68 REGCETLAKATIDRYGVADILVNNAGLGLFSPFLNVDDKLIDKHISTDFKSVIYCSQELAKEMREGGAIVNIASVAGIR- 146 (252)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcchhccC-
Confidence 99888777642 689999999975433222 233334567899999999999988753 1113899999976553
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
+..+.+.|+.+|++.|.+++.+++++ ++++.+++||.+.++....- .
T Consensus 147 -----------------------~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~i~v~~v~Pg~i~t~~~~~~------~-- 195 (252)
T PRK06077 147 -----------------------PAYGLSIYGAMKAAVINLTKYLALELAPKIRVNAIAPGFVKTKLGESL------F-- 195 (252)
T ss_pred -----------------------CCCCchHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeeCCccChHHHhh------h--
Confidence 22446899999999999999999886 68999999999987642100 0
Q ss_pred cCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCC
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQ 382 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~ 382 (479)
............. ......+++++|+|++++.++..+...|+ +||+.++.
T Consensus 196 --------~~~~~~~~~~~~~--------~~~~~~~~~~~dva~~~~~~~~~~~~~g~--~~~i~~g~ 245 (252)
T PRK06077 196 --------KVLGMSEKEFAEK--------FTLMGKILDPEEVAEFVAAILKIESITGQ--VFVLDSGE 245 (252)
T ss_pred --------hcccccHHHHHHh--------cCcCCCCCCHHHHHHHHHHHhCccccCCC--eEEecCCe
Confidence 0000000000000 01123689999999999999986655566 99998753
|
|
| >KOG2774 consensus NAD dependent epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-21 Score=170.84 Aligned_cols=306 Identities=18% Similarity=0.142 Sum_probs=222.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhC-CC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNK-GY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~-G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+..+|||||+-|.+|..++..|..+ |- .|+.-|....+.. ......++..|+.
T Consensus 43 ~~PrvLITG~LGQLG~~~A~LLR~~yGs~~VILSDI~KPp~~-------------------------V~~~GPyIy~DIL 97 (366)
T KOG2774|consen 43 KAPRVLITGSLGQLGRGLASLLRYMYGSECVILSDIVKPPAN-------------------------VTDVGPYIYLDIL 97 (366)
T ss_pred CCCeEEEecchHHHhHHHHHHHHHHhCCccEehhhccCCchh-------------------------hcccCCchhhhhh
Confidence 3568999999999999999988776 65 4555454333210 0135678889999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIE 242 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~ 242 (479)
|...+++++-..++|.+||..+..+.-.. .+ .....++|+.|..|+++.|++++ .++..-||.+.+|.....-.
T Consensus 98 D~K~L~eIVVn~RIdWL~HfSALLSAvGE-~N---VpLA~~VNI~GvHNil~vAa~~k--L~iFVPSTIGAFGPtSPRNP 171 (366)
T KOG2774|consen 98 DQKSLEEIVVNKRIDWLVHFSALLSAVGE-TN---VPLALQVNIRGVHNILQVAAKHK--LKVFVPSTIGAFGPTSPRNP 171 (366)
T ss_pred ccccHHHhhcccccceeeeHHHHHHHhcc-cC---CceeeeecchhhhHHHHHHHHcC--eeEeecccccccCCCCCCCC
Confidence 99999999988899999999876432111 11 12346899999999999999987 46777899999997653111
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
..+. ....|...||.||..+|.+-+.+..++|+..-++|.+.+....... +|...
T Consensus 172 TPdl------------tIQRPRTIYGVSKVHAEL~GEy~~hrFg~dfr~~rfPg~is~~~pg-------------ggttd 226 (366)
T KOG2774|consen 172 TPDL------------TIQRPRTIYGVSKVHAELLGEYFNHRFGVDFRSMRFPGIISATKPG-------------GGTTD 226 (366)
T ss_pred CCCe------------eeecCceeechhHHHHHHHHHHHHhhcCccceecccCcccccCCCC-------------CCcch
Confidence 1111 2456789999999999999999999999999999988776653211 22223
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhhhcCCc
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLD 402 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~~~g~~ 402 (479)
..+..|-....+|+ ...+-.++....++|..|+-++++..+..+...-+.++||+.+-.+|..|+++.+.+. + ..
T Consensus 227 ya~A~f~~Al~~gk-~tCylrpdtrlpmmy~~dc~~~~~~~~~a~~~~lkrr~ynvt~~sftpee~~~~~~~~---~-p~ 301 (366)
T KOG2774|consen 227 YAIAIFYDALQKGK-HTCYLRPDTRLPMMYDTDCMASVIQLLAADSQSLKRRTYNVTGFSFTPEEIADAIRRV---M-PG 301 (366)
T ss_pred hHHHHHHHHHHcCC-cccccCCCccCceeehHHHHHHHHHHHhCCHHHhhhheeeeceeccCHHHHHHHHHhh---C-CC
Confidence 34444444444554 3444455677889999999999999999887766667999998889999999999996 2 22
Q ss_pred ceeeecCCCC-cccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHH
Q 011707 403 VKTISVPNPR-VEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 403 ~~~~~~~~~~-~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
.++.+.+..+ .-.+.+...+|.+.+|. +.|+-++.+-.+++.++.-.+.
T Consensus 302 ~~i~y~~~srq~iad~wp~~~dds~ar~~wh~~h~~~l~~~i~~~i~~~~~ 352 (366)
T KOG2774|consen 302 FEIDYDICTRQSIADSWPMSLDDSEARTEWHEKHSLHLLSIISTVVAVHKS 352 (366)
T ss_pred ceeecccchhhhhhhhcccccCchhHhhHHHHhhhhhHHHHHHHHHHHHHh
Confidence 3444444332 23345666789898876 9999999888888888776544
|
|
| >PRK12746 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=184.58 Aligned_cols=228 Identities=14% Similarity=0.069 Sum_probs=158.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEe-cccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD-SLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~d-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+++++|+||||+|+||.+++++|+++|++|+++. |.... ..+....+. ..+..+.++.+|++
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~----------------~~~~~~~~~-~~~~~~~~~~~D~~ 66 (254)
T PRK12746 4 LDGKVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQA----------------ADETIREIE-SNGGKAFLIEADLN 66 (254)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH----------------HHHHHHHHH-hcCCcEEEEEcCcC
Confidence 4578999999999999999999999999998753 32211 011111111 11246888999999
Q ss_pred ChHHHHHHhhhc-----------CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHHc--CCcceEEEe
Q 011707 163 DFEFLSESFKSF-----------EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKEF--RQECHLVKL 228 (479)
Q Consensus 163 d~~~~~~~~~~~-----------~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--g~~~~~V~~ 228 (479)
|++++.++++.. ++|+|||+||....... ..+.+.+...+++|+.|+.++++++.+. ..+ +||++
T Consensus 67 d~~~i~~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~v~~ 145 (254)
T PRK12746 67 SIDGVKKLVEQLKNELQIRVGTSEIDILVNNAGIGTQGTIENTTEEIFDEIMAVNIKAPFFLIQQTLPLLRAEG-RVINI 145 (254)
T ss_pred CHHHHHHHHHHHHHHhccccCCCCccEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCC-EEEEE
Confidence 999998887742 58999999997543222 2234455677889999999999998763 333 89999
Q ss_pred eccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCch
Q 011707 229 GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 229 SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~ 305 (479)
||..++.. ..+...|+.+|++.+.+++.++++ .++++++++||.++++....-
T Consensus 146 sS~~~~~~------------------------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~pg~~~t~~~~~~ 201 (254)
T PRK12746 146 SSAEVRLG------------------------FTGSIAYGLSKGALNTMTLPLAKHLGERGITVNTIMPGYTKTDINAKL 201 (254)
T ss_pred CCHHhcCC------------------------CCCCcchHhhHHHHHHHHHHHHHHHhhcCcEEEEEEECCccCcchhhh
Confidence 99766532 233678999999999999988876 479999999999988743210
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. ....+....... .....+++++|+++++..++.++.. .|+ +|++.++
T Consensus 202 ~------------------~~~~~~~~~~~~--------~~~~~~~~~~dva~~~~~l~~~~~~~~~g~--~~~i~~~ 251 (254)
T PRK12746 202 L------------------DDPEIRNFATNS--------SVFGRIGQVEDIADAVAFLASSDSRWVTGQ--IIDVSGG 251 (254)
T ss_pred c------------------cChhHHHHHHhc--------CCcCCCCCHHHHHHHHHHHcCcccCCcCCC--EEEeCCC
Confidence 0 000011111111 1123567999999999988876533 355 8999865
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=184.17 Aligned_cols=237 Identities=16% Similarity=0.151 Sum_probs=160.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+....... .+.++.++.+|++|
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~~ 65 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERL----------------DEVAAEIDD-LGRRALAVPTDITD 65 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHH----------------HHHHHHHHH-hCCceEEEecCCCC
Confidence 4678999999999999999999999999999998854321 011111111 13468899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~~v 233 (479)
.++++++++.. ++|+||||||.... .....+.+++.+++++|+.|+..+++++... ..+ +||++||...
T Consensus 66 ~~~~~~~~~~~~~~~g~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~ii~~sS~~~ 144 (258)
T PRK07890 66 EDQCANLVALALERFGRVDALVNNAFRVPSMKPLADADFAHWRAVIELNVLGTLRLTQAFTPALAESGG-SIVMINSMVL 144 (258)
T ss_pred HHHHHHHHHHHHHHcCCccEEEECCccCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCC-EEEEEechhh
Confidence 99988877643 68999999997432 1223345677888999999999999998653 223 8999999654
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +..+...|+.+|.+.+.+++.++.++ ++++++++||.+++|...... ..
T Consensus 145 ~~------------------------~~~~~~~Y~~sK~a~~~l~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~--~~ 198 (258)
T PRK07890 145 RH------------------------SQPKYGAYKMAKGALLAASQSLATELGPQGIRVNSVAPGYIWGDPLKGYF--RH 198 (258)
T ss_pred cc------------------------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEeCCccCcHHHHHHh--hh
Confidence 32 22346789999999999999998764 899999999999998532100 00
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC--CCCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA--QPGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~g~~~~~ni~~~ 381 (479)
.... .+ .-...+....... .....+.+++|++++++.++.... ..|+ ++.+.++
T Consensus 199 ~~~~---~~---~~~~~~~~~~~~~---------~~~~~~~~~~dva~a~~~l~~~~~~~~~G~--~i~~~gg 254 (258)
T PRK07890 199 QAGK---YG---VTVEQIYAETAAN---------SDLKRLPTDDEVASAVLFLASDLARAITGQ--TLDVNCG 254 (258)
T ss_pred cccc---cC---CCHHHHHHHHhhc---------CCccccCCHHHHHHHHHHHcCHhhhCccCc--EEEeCCc
Confidence 0000 00 0001111111111 122347889999999999887532 2343 6666554
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-21 Score=186.44 Aligned_cols=243 Identities=15% Similarity=0.120 Sum_probs=160.7
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d 163 (479)
++|++|||||+|+||.++++.|+++|++|++++|..... .+..+..... .+.++.++.+|++|
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~~D~~d 65 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQ----------------ENLLSQATQLNLQQNIKVQQLDVTD 65 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHH----------------HHHHHHHHhcCCCCceeEEecCCCC
Confidence 467899999999999999999999999999998764321 0111111111 12468899999999
Q ss_pred hHHHHHHhhh-----cCCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecc-c
Q 011707 164 FEFLSESFKS-----FEPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTM-G 232 (479)
Q Consensus 164 ~~~~~~~~~~-----~~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~-~ 232 (479)
++++++ ++. .++|+||||||....... ..+.+++...+++|+.|+.++++.+ ++.+.+ +||++||. +
T Consensus 66 ~~~~~~-~~~~~~~~~~id~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~vsS~~~ 143 (280)
T PRK06914 66 QNSIHN-FQLVLKEIGRIDLLVNNAGYANGGFVEEIPVEEYRKQFETNVFGAISVTQAVLPYMRKQKSG-KIINISSISG 143 (280)
T ss_pred HHHHHH-HHHHHHhcCCeeEEEECCcccccCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEECcccc
Confidence 988876 543 158999999997553322 2233456677899999999998886 445555 89999985 3
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
+++. .+...|+.+|++.+.+++.++.+ +|++++++|||.++++..+......
T Consensus 144 ~~~~-------------------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~~~~~ 198 (280)
T PRK06914 144 RVGF-------------------------PGLSPYVSSKYALEGFSESLRLELKPFGIDVALIEPGSYNTNIWEVGKQLA 198 (280)
T ss_pred cCCC-------------------------CCCchhHHhHHHHHHHHHHHHHHhhhhCCEEEEEecCCcccchhhcccccc
Confidence 3332 23678999999999999988743 5899999999999887432110000
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHH
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVN 386 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~ 386 (479)
. +.....+. ....+..+.... ......+++++|+|++++.+++++... . .|++++ ..+++.
T Consensus 199 ~--~~~~~~~~----~~~~~~~~~~~~-------~~~~~~~~~~~dva~~~~~~~~~~~~~-~--~~~~~~~~~~~~~ 260 (280)
T PRK06914 199 E--NQSETTSP----YKEYMKKIQKHI-------NSGSDTFGNPIDVANLIVEIAESKRPK-L--RYPIGKGVKLMIL 260 (280)
T ss_pred c--cccccccc----hHHHHHHHHHHH-------hhhhhccCCHHHHHHHHHHHHcCCCCC-c--ccccCCchHHHHH
Confidence 0 00000010 111111111100 012346789999999999999986553 3 699886 344443
|
|
| >PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.9e-21 Score=181.19 Aligned_cols=228 Identities=13% Similarity=0.098 Sum_probs=159.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.|+||||||+|+||.++++.|+++|++|++++|..... ..+....+.. .+.++.++.+|++|++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~---------------~~~~~~~~~~-~~~~~~~~~~D~~~~~ 65 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEE---------------LAATQQELRA-LGVEVIFFPADVADLS 65 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhH---------------HHHHHHHHHh-cCCceEEEEecCCCHH
Confidence 47899999999999999999999999999998753311 0111111111 1246889999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCcc---cccccccccchhhhhhHHHHHHHHHHHHHc-----C-----CcceEEE
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAP---YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-----R-----QECHLVK 227 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~---~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-----g-----~~~~~V~ 227 (479)
++.++++.. .+|+||||||..... ....++.++...+++|+.++.++++++... + .. +||+
T Consensus 66 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~-~iv~ 144 (256)
T PRK12745 66 AHEAMLDAAQAAWGRIDCLVNNAGVGVKVRGDLLDLTPESFDRVLAINLRGPFFLTQAVAKRMLAQPEPEELPHR-SIVF 144 (256)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCccCCCCCCChhhCCHHHHHHHHHhcchHHHHHHHHHHHHHHhccCcCCCCCc-EEEE
Confidence 888877643 689999999975322 122244566778999999999999887542 1 23 7999
Q ss_pred eeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCc
Q 011707 228 LGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDE 304 (479)
Q Consensus 228 ~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~ 304 (479)
+||...+. +..+.+.|+.+|++.|.+++.++.+ +|+++++++||.+.++....
T Consensus 145 ~sS~~~~~------------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~ 200 (256)
T PRK12745 145 VSSVNAIM------------------------VSPNRGEYCISKAGLSMAAQLFAARLAEEGIGVYEVRPGLIKTDMTAP 200 (256)
T ss_pred ECChhhcc------------------------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCCcCccccc
Confidence 99965432 1123578999999999999999876 58999999999998875321
Q ss_pred hhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 305 TAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
. ...+......+ . .....|.+++|+++++..++........+.+|++.++
T Consensus 201 ~-------------------~~~~~~~~~~~-~-------~~~~~~~~~~d~a~~i~~l~~~~~~~~~G~~~~i~gg 250 (256)
T PRK12745 201 V-------------------TAKYDALIAKG-L-------VPMPRWGEPEDVARAVAALASGDLPYSTGQAIHVDGG 250 (256)
T ss_pred c-------------------chhHHhhhhhc-C-------CCcCCCcCHHHHHHHHHHHhCCcccccCCCEEEECCC
Confidence 0 11111111111 1 1224678999999999998865433212249999875
|
|
| >PRK08063 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7e-21 Score=180.50 Aligned_cols=230 Identities=15% Similarity=0.129 Sum_probs=158.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEE-ecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIV-DSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+.++++|||||+|+||.+++++|+++|++|+++ +|.... ..+..+.... .+.++.++.+|++
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~----------------~~~~~~~~~~-~~~~~~~~~~D~~ 64 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKA----------------AEETAEEIEA-LGRKALAVKANVG 64 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH----------------HHHHHHHHHh-cCCeEEEEEcCCC
Confidence 356899999999999999999999999998864 433211 1111111111 2356888999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccccc-ccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSM-IDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~-~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|++++.+++++. ++|+|||+||........ .+.+++...+++|+.++.++++++.+ .+.+ +||++||..
T Consensus 65 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~~sS~~ 143 (250)
T PRK08063 65 DVEKIKEMFAQIDEEFGRLDVFVNNAASGVLRPAMELEESHWDWTMNINAKALLFCAQEAAKLMEKVGGG-KIISLSSLG 143 (250)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCe-EEEEEcchh
Confidence 999998888754 589999999975433222 23445566789999999999988865 3444 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +..+...|+.+|++.|.+++.++.+ .|+++++++||.+..+....-
T Consensus 144 ~~~------------------------~~~~~~~y~~sK~a~~~~~~~~~~~~~~~~i~v~~i~pg~v~t~~~~~~---- 195 (250)
T PRK08063 144 SIR------------------------YLENYTTVGVSKAALEALTRYLAVELAPKGIAVNAVSGGAVDTDALKHF---- 195 (250)
T ss_pred hcc------------------------CCCCccHHHHHHHHHHHHHHHHHHHHhHhCeEEEeEecCcccCchhhhc----
Confidence 432 2233678999999999999998876 489999999999977642110
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. ...+........+ ...+++.+|++++++.++..+...-.++++++.++
T Consensus 196 ------------~~-~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg 245 (250)
T PRK08063 196 ------------PN-REELLEDARAKTP---------AGRMVEPEDVANAVLFLCSPEADMIRGQTIIVDGG 245 (250)
T ss_pred ------------cC-chHHHHHHhcCCC---------CCCCcCHHHHHHHHHHHcCchhcCccCCEEEECCC
Confidence 00 0111111111111 12468999999999999976544322348888874
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=186.68 Aligned_cols=235 Identities=14% Similarity=0.128 Sum_probs=155.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|+|+||||+|+||.+++++|+++|++|++++|.... +... ...++.++.+|++|.
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~--------------------l~~~---~~~~~~~~~~Dv~~~ 58 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDK--------------------MEDL---ASLGVHPLSLDVTDE 58 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH--------------------HHHH---HhCCCeEEEeeCCCH
Confidence 47899999999999999999999999999999875431 1111 113578899999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHH----HHHHcCCcceEEEeeccccc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLF----AMKEFRQECHLVKLGTMGEY 234 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~----~a~~~g~~~~~V~~SS~~v~ 234 (479)
++++++++.. ++|+||||||...... ...+.+++...+++|+.|+..+++ .+++.+.+ +||++||.+.+
T Consensus 59 ~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g-~iv~isS~~~~ 137 (273)
T PRK06182 59 ASIKAAVDTIIAEEGRIDVLVNNAGYGSYGAIEDVPIDEARRQFEVNLFGAARLTQLVLPHMRAQRSG-RIINISSMGGK 137 (273)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcchhhc
Confidence 9998887643 6999999999764332 222445677889999999655554 55566666 99999995422
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
. +......|+.+|++.+.+++.++.+ +|+++++++||.|..+...... ..+
T Consensus 138 ~------------------------~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~~ 191 (273)
T PRK06182 138 I------------------------YTPLGAWYHATKFALEGFSDALRLEVAPFGIDVVVIEPGGIKTEWGDIAA--DHL 191 (273)
T ss_pred C------------------------CCCCccHhHHHHHHHHHHHHHHHHHhcccCCEEEEEecCCcccccchhhh--hhh
Confidence 1 1112457999999999998887755 4899999999999887531100 000
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQ 382 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~ 382 (479)
... ...+.+......+...+.. ......+.+.+|+|++++.++....... .|+++.+.
T Consensus 192 ~~~-~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~vA~~i~~~~~~~~~~~---~~~~g~~~ 249 (273)
T PRK06182 192 LKT-SGNGAYAEQAQAVAASMRS---------TYGSGRLSDPSVIADAISKAVTARRPKT---RYAVGFGA 249 (273)
T ss_pred ccc-ccccchHHHHHHHHHHHHH---------hhccccCCCHHHHHHHHHHHHhCCCCCc---eeecCcch
Confidence 000 0000000000001111111 1123457899999999999998643322 67776543
|
|
| >PRK12935 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=179.03 Aligned_cols=227 Identities=11% Similarity=0.072 Sum_probs=160.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++++++|||||+|+||.+++++|+++|++|+++.+..... ..+..+.+.. .+.++.++.+|++|
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~---------------~~~~~~~l~~-~~~~~~~~~~D~~~ 67 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEA---------------AENLVNELGK-EGHDVYAVQADVSK 67 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHH---------------HHHHHHHHHh-cCCeEEEEECCCCC
Confidence 4578999999999999999999999999998765432211 1111111111 12468899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
.+++.++++.. .+|+||||||...... ...+.+++...+++|+.++.++++++.. .+.+ +||++||...
T Consensus 68 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~ 146 (247)
T PRK12935 68 VEDANRLVEEAVNHFGKVDILVNNAGITRDRTFKKLNREDWERVIDVNLSSVFNTTSAVLPYITEAEEG-RIISISSIIG 146 (247)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEcchhh
Confidence 99998888752 5899999999754332 2234456678899999999999998864 3344 8999999533
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +..+...|+.+|++.+.+++.++.++ ++++++++||.+.++....
T Consensus 147 ~~------------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~------ 196 (247)
T PRK12935 147 QA------------------------GGFGQTNYSAAKAGMLGFTKSLALELAKTNVTVNAICPGFIDTEMVAE------ 196 (247)
T ss_pred cC------------------------CCCCCcchHHHHHHHHHHHHHHHHHHHHcCcEEEEEEeCCCcChhhhh------
Confidence 21 11235789999999999998888764 8999999999997663210
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC-CCCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA-QPGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~-~~g~~~~~ni~~~ 381 (479)
...........+ ...+.+.+++|++++++.+++... ..|+ +||+.++
T Consensus 197 -------------~~~~~~~~~~~~---------~~~~~~~~~edva~~~~~~~~~~~~~~g~--~~~i~~g 244 (247)
T PRK12935 197 -------------VPEEVRQKIVAK---------IPKKRFGQADEIAKGVVYLCRDGAYITGQ--QLNINGG 244 (247)
T ss_pred -------------ccHHHHHHHHHh---------CCCCCCcCHHHHHHHHHHHcCcccCccCC--EEEeCCC
Confidence 001111111111 123568999999999999987532 3455 9999875
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.3e-21 Score=171.56 Aligned_cols=183 Identities=22% Similarity=0.301 Sum_probs=142.6
Q ss_pred EEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHHH
Q 011707 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLS 168 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~~ 168 (479)
|+|+||||++|++++++|+++|++|+++.|...... . ..+++++.+|+.|++++.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~--------------------~-----~~~~~~~~~d~~d~~~~~ 55 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAE--------------------D-----SPGVEIIQGDLFDPDSVK 55 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHH--------------------H-----CTTEEEEESCTTCHHHHH
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhcc--------------------c-----ccccccceeeehhhhhhh
Confidence 799999999999999999999999999998754211 1 368999999999999999
Q ss_pred HHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCceee
Q 011707 169 ESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITI 248 (479)
Q Consensus 169 ~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~~~~ 248 (479)
++++ ++|+|||+++.... +...+.++++++++.+++ +||++||.++|+.........
T Consensus 56 ~al~--~~d~vi~~~~~~~~----------------~~~~~~~~~~a~~~~~~~-~~v~~s~~~~~~~~~~~~~~~---- 112 (183)
T PF13460_consen 56 AALK--GADAVIHAAGPPPK----------------DVDAAKNIIEAAKKAGVK-RVVYLSSAGVYRDPPGLFSDE---- 112 (183)
T ss_dssp HHHT--TSSEEEECCHSTTT----------------HHHHHHHHHHHHHHTTSS-EEEEEEETTGTTTCTSEEEGG----
T ss_pred hhhh--hcchhhhhhhhhcc----------------cccccccccccccccccc-cceeeeccccCCCCCcccccc----
Confidence 9999 89999999974220 377888999999999988 999999999998654321110
Q ss_pred cCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHHHH
Q 011707 249 NHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRF 328 (479)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 328 (479)
.......|...|..+|++++ +.+++++++||+.+||+.....
T Consensus 113 -----------~~~~~~~~~~~~~~~e~~~~----~~~~~~~ivrp~~~~~~~~~~~----------------------- 154 (183)
T PF13460_consen 113 -----------DKPIFPEYARDKREAEEALR----ESGLNWTIVRPGWIYGNPSRSY----------------------- 154 (183)
T ss_dssp -----------TCGGGHHHHHHHHHHHHHHH----HSTSEEEEEEESEEEBTTSSSE-----------------------
T ss_pred -----------cccchhhhHHHHHHHHHHHH----hcCCCEEEEECcEeEeCCCcce-----------------------
Confidence 01113678899998888763 4699999999999999963210
Q ss_pred HHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhC
Q 011707 329 CVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN 366 (479)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~ 366 (479)
. .+...+....++|+.+|+|++++.++++
T Consensus 155 --------~-~~~~~~~~~~~~i~~~DvA~~~~~~l~~ 183 (183)
T PF13460_consen 155 --------R-LIKEGGPQGVNFISREDVAKAIVEALEN 183 (183)
T ss_dssp --------E-EESSTSTTSHCEEEHHHHHHHHHHHHH-
T ss_pred --------e-EEeccCCCCcCcCCHHHHHHHHHHHhCC
Confidence 0 0111334556999999999999999874
|
... |
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-21 Score=186.48 Aligned_cols=231 Identities=16% Similarity=0.131 Sum_probs=164.5
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..+++|+||||||+|+||.+++++|+++|++|+++++..... .......+ ...+.++.++.+|+
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~---------------~~~~~~~~-~~~~~~~~~~~~Dl 105 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHED---------------ANETKQRV-EKEGVKCLLIPGDV 105 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchH---------------HHHHHHHH-HhcCCeEEEEEccC
Confidence 456789999999999999999999999999999988753211 00111111 11234688899999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc--ccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeecccc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY--SMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGE 233 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~--~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v 233 (479)
+|.+.++++++.. ++|+||||||...... ...+.+++..++++|+.++.++++++... ....+||++||...
T Consensus 106 ~~~~~~~~~~~~i~~~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~isS~~~ 185 (290)
T PRK06701 106 SDEAFCKDAVEETVRELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTGSITG 185 (290)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEecccc
Confidence 9999888887643 6899999999753322 22344566788999999999999998753 11238999999766
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
|... .....|+.+|++.+.+++.++.++ |++++.++||.++.+.....
T Consensus 186 ~~~~------------------------~~~~~Y~~sK~a~~~l~~~la~~~~~~gIrv~~i~pG~v~T~~~~~~----- 236 (290)
T PRK06701 186 YEGN------------------------ETLIDYSATKGAIHAFTRSLAQSLVQKGIRVNAVAPGPIWTPLIPSD----- 236 (290)
T ss_pred cCCC------------------------CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCCCCcccccc-----
Confidence 5322 124679999999999999999875 89999999999988743210
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.....+.... .......+.+++|++++++.++..... .|+ ++++.++
T Consensus 237 -------------~~~~~~~~~~---------~~~~~~~~~~~~dva~~~~~ll~~~~~~~~G~--~i~idgg 285 (290)
T PRK06701 237 -------------FDEEKVSQFG---------SNTPMQRPGQPEELAPAYVFLASPDSSYITGQ--MLHVNGG 285 (290)
T ss_pred -------------cCHHHHHHHH---------hcCCcCCCcCHHHHHHHHHHHcCcccCCccCc--EEEeCCC
Confidence 0011111111 112234678999999999999986543 344 8888764
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=177.53 Aligned_cols=227 Identities=15% Similarity=0.086 Sum_probs=160.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+.+|+||||||+|+||.++++.|+++|++|++++|...... ....... ..+.++.++.+|++|
T Consensus 3 ~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~----------------~~~~~~~-~~~~~~~~~~~D~~~ 65 (246)
T PRK05653 3 LQGKTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAE----------------ALAAELR-AAGGEARVLVFDVSD 65 (246)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHH----------------HHHHHHH-hcCCceEEEEccCCC
Confidence 45689999999999999999999999999999987643110 0011111 123468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
++++.+++++. .+|+|||+||...... ...+++++...++.|+.++.++++++. +.+.+ +||++||...
T Consensus 66 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~-~ii~~ss~~~ 144 (246)
T PRK05653 66 EAAVRALIEAAVEAFGALDILVNNAGITRDALLPRMSEEDWDRVIDVNLTGTFNVVRAALPPMIKARYG-RIVNISSVSG 144 (246)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEECcHHh
Confidence 99888887642 5799999999754422 222444556778999999999998884 44555 9999998533
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
.. +..+...|+.+|.+.+.+++.++++ .+++++++||+.++|+....
T Consensus 145 ~~------------------------~~~~~~~y~~sk~~~~~~~~~l~~~~~~~~i~~~~i~pg~~~~~~~~~------ 194 (246)
T PRK05653 145 VT------------------------GNPGQTNYSAAKAGVIGFTKALALELASRGITVNAVAPGFIDTDMTEG------ 194 (246)
T ss_pred cc------------------------CCCCCcHhHhHHHHHHHHHHHHHHHHhhcCeEEEEEEeCCcCCcchhh------
Confidence 21 1133578999999999999998876 38999999999999986421
Q ss_pred hhcccCCCCcccchHHHHHH-HHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCV-QAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
+..... ..... .....+++++|+++++..++......-..++|++.++
T Consensus 195 --------------~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~gg 243 (246)
T PRK05653 195 --------------LPEEVKAEILKE---------IPLGRLGQPEEVANAVAFLASDAASYITGQVIPVNGG 243 (246)
T ss_pred --------------hhHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence 111111 11111 1125688999999999999875433322349998875
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-21 Score=181.94 Aligned_cols=235 Identities=17% Similarity=0.155 Sum_probs=158.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++++++|||||+|+||.+++++|+++|++|++++|...... +..... ...++.++.+|++|
T Consensus 9 ~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~----------------~~~~~~---~~~~~~~~~~D~~~ 69 (264)
T PRK12829 9 LDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCDVSEAALA----------------ATAARL---PGAKVTATVADVAD 69 (264)
T ss_pred cCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHH----------------HHHHHH---hcCceEEEEccCCC
Confidence 46789999999999999999999999999999988543110 001111 11257889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
++++.++++.. ++|+|||+||..... ....+.+++.+++++|+.++.++++++. ..+.+.+|+++||..
T Consensus 70 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~vv~~ss~~ 149 (264)
T PRK12829 70 PAQVERVFDTAVERFGGLDVLVNNAGIAGPTGGIDEITPEQWEQTLAVNLNGQFYFARAAVPLLKASGHGGVIIALSSVA 149 (264)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCeEEEEecccc
Confidence 99988887643 689999999975221 1223445567889999999999998874 334323788888743
Q ss_pred -cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 233 -EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 233 -v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
.++. .....|+.+|.+.|.+++.++.+. +++++++|||+++||..+...
T Consensus 150 ~~~~~-------------------------~~~~~y~~~K~a~~~~~~~l~~~~~~~~i~~~~l~pg~v~~~~~~~~~-- 202 (264)
T PRK12829 150 GRLGY-------------------------PGRTPYAASKWAVVGLVKSLAIELGPLGIRVNAILPGIVRGPRMRRVI-- 202 (264)
T ss_pred cccCC-------------------------CCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcCChHHHHHh--
Confidence 2221 224679999999999999988764 899999999999998642110
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
...... .+ .....+....... .....+++++|+++++..++..... .|+ .|++.++
T Consensus 203 ~~~~~~---~~---~~~~~~~~~~~~~---------~~~~~~~~~~d~a~~~~~l~~~~~~~~~g~--~~~i~~g 260 (264)
T PRK12829 203 EARAQQ---LG---IGLDEMEQEYLEK---------ISLGRMVEPEDIAATALFLASPAARYITGQ--AISVDGN 260 (264)
T ss_pred hhhhhc---cC---CChhHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCccccCccCc--EEEeCCC
Confidence 000000 00 0000111111111 1123589999999999888864322 344 8999884
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-21 Score=180.81 Aligned_cols=231 Identities=12% Similarity=-0.013 Sum_probs=161.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++++||||||+|+||.+++++|+++|++|++++|..... .+....+.. +.++.++.+|++|
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~--~~~~~~~~~D~~~ 64 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAA----------------ERVAAEILA--GGRAIAVAADVSD 64 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHhc--CCeEEEEECCCCC
Confidence 4678999999999999999999999999999999865321 111111111 3468899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
++++.+++++. ++|+|||+||..... ....+++++...+++|+.++.++++.+.. .+.+ +||++||..
T Consensus 65 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~ 143 (251)
T PRK07231 65 EADVEAAVAAALERFGSVDILVNNAGTTHRNGPLLDVDEAEFDRIFAVNVKSPYLWTQAAVPAMRGEGGG-AIVNVASTA 143 (251)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc-EEEEEcChh
Confidence 99998887653 689999999974322 22335556777899999998888877754 4445 899999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.++ +..+...|+.+|...+.+++.++.++ ++++++++||.+.++.....
T Consensus 144 ~~~------------------------~~~~~~~y~~sk~~~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~---- 195 (251)
T PRK07231 144 GLR------------------------PRPGLGWYNASKGAVITLTKALAAELGPDKIRVNAVAPVVVETGLLEAF---- 195 (251)
T ss_pred hcC------------------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEECccCCCcchhh----
Confidence 553 22346789999999999999988764 89999999999976642210
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
+.............. .....+++++|+|.+++.++..+.....+..+.+.++
T Consensus 196 -----------~~~~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg 247 (251)
T PRK07231 196 -----------MGEPTPENRAKFLAT---------IPLGRLGTPEDIANAALFLASDEASWITGVTLVVDGG 247 (251)
T ss_pred -----------hcccChHHHHHHhcC---------CCCCCCcCHHHHHHHHHHHhCccccCCCCCeEEECCC
Confidence 000000111111111 1223578999999999999976543222237777664
|
|
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-21 Score=172.97 Aligned_cols=214 Identities=22% Similarity=0.236 Sum_probs=156.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCC-CceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTG-KNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~Dl~ 162 (479)
.++|.++||||+++||.+++++|+++|++|++..|+.. +++.+....+ ..+..+..|++
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~~vvl~aRR~d--------------------rL~~la~~~~~~~~~~~~~DVt 63 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGAKVVLAARREE--------------------RLEALADEIGAGAALALALDVT 63 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCCeEEEEeccHH--------------------HHHHHHHhhccCceEEEeeccC
Confidence 35689999999999999999999999999999998653 2333322222 47889999999
Q ss_pred ChHHHHHHhh----hc-CCCEEEEcccccCc-ccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc-
Q 011707 163 DFEFLSESFK----SF-EPDAVVHFGEQRSA-PYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM- 231 (479)
Q Consensus 163 d~~~~~~~~~----~~-~~D~Vih~A~~~~~-~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~- 231 (479)
|.++++++++ ++ ++|++|||||.... +....++++|..++++|+.|..++.++.. +.+.+ +||++||.
T Consensus 64 D~~~~~~~i~~~~~~~g~iDiLvNNAGl~~g~~~~~~~~~dw~~Mid~Ni~G~l~~~~avLP~m~~r~~G-~IiN~~SiA 142 (246)
T COG4221 64 DRAAVEAAIEALPEEFGRIDILVNNAGLALGDPLDEADLDDWDRMIDTNVKGLLNGTRAVLPGMVERKSG-HIINLGSIA 142 (246)
T ss_pred CHHHHHHHHHHHHHhhCcccEEEecCCCCcCChhhhCCHHHHHHHHHHHHHHHHHHHHHhhhHHHhcCCc-eEEEecccc
Confidence 9988666554 33 59999999998654 33455888999999999999999988774 44555 99999994
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
+.| +....+.|+.+|+....+...+.++. +++++.+-||.|-......-
T Consensus 143 G~~-------------------------~y~~~~vY~ATK~aV~~fs~~LR~e~~g~~IRVt~I~PG~v~~~~~s~v--- 194 (246)
T COG4221 143 GRY-------------------------PYPGGAVYGATKAAVRAFSLGLRQELAGTGIRVTVISPGLVETTEFSTV--- 194 (246)
T ss_pred ccc-------------------------cCCCCccchhhHHHHHHHHHHHHHHhcCCCeeEEEecCceecceecccc---
Confidence 333 22336889999999999998888774 79999999998844311000
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP 370 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~ 370 (479)
...| -..-.... ......+..+|+|+++..+++.|...
T Consensus 195 -------~~~g-----~~~~~~~~------------y~~~~~l~p~dIA~~V~~~~~~P~~v 232 (246)
T COG4221 195 -------RFEG-----DDERADKV------------YKGGTALTPEDIAEAVLFAATQPQHV 232 (246)
T ss_pred -------cCCc-----hhhhHHHH------------hccCCCCCHHHHHHHHHHHHhCCCcc
Confidence 0000 00000110 01235789999999999999998763
|
|
| >PRK06123 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-20 Score=178.12 Aligned_cols=227 Identities=19% Similarity=0.189 Sum_probs=156.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
++++|||||+|+||.+++++|+++|++|+++++..... ..+....+.. .+.++.++.+|++|.+
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~---------------~~~~~~~l~~-~~~~~~~~~~Dl~~~~ 65 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYAVCLNYLRNRDA---------------AEAVVQAIRR-QGGEALAVAADVADEA 65 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHH---------------HHHHHHHHHh-CCCcEEEEEeccCCHH
Confidence 46899999999999999999999999988776432211 0111111111 1346788999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHHHc------CCcceEEEeecc-
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF------RQECHLVKLGTM- 231 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~------g~~~~~V~~SS~- 231 (479)
+++++++.. .+|+||||||..... .....++++...+++|+.++.++++++.+. +.+.+||++||.
T Consensus 66 ~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~g~iv~~sS~~ 145 (248)
T PRK06123 66 DVLRLFEAVDRELGRLDALVNNAGILEAQMRLEQMDAARLTRIFATNVVGSFLCAREAVKRMSTRHGGRGGAIVNVSSMA 145 (248)
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCeEEEEECchh
Confidence 998887643 589999999975432 222244566788999999999999887653 112379999995
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
++++.+. ....|+.+|++.+.+++.++.+. |++++++||+++++|.....
T Consensus 146 ~~~~~~~------------------------~~~~Y~~sKaa~~~~~~~la~~~~~~~i~v~~i~pg~v~~~~~~~~--- 198 (248)
T PRK06123 146 ARLGSPG------------------------EYIDYAASKGAIDTMTIGLAKEVAAEGIRVNAVRPGVIYTEIHASG--- 198 (248)
T ss_pred hcCCCCC------------------------CccchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCchhhcc---
Confidence 4443221 12469999999999999998875 89999999999999853210
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.....+.......++ .-+.+++|++++++.++..... .|+ +|++.++
T Consensus 199 ---------------~~~~~~~~~~~~~p~---------~~~~~~~d~a~~~~~l~~~~~~~~~g~--~~~~~gg 247 (248)
T PRK06123 199 ---------------GEPGRVDRVKAGIPM---------GRGGTAEEVARAILWLLSDEASYTTGT--FIDVSGG 247 (248)
T ss_pred ---------------CCHHHHHHHHhcCCC---------CCCcCHHHHHHHHHHHhCccccCccCC--EEeecCC
Confidence 011222222222221 1234789999999998876433 344 8998763
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.8e-21 Score=180.11 Aligned_cols=233 Identities=16% Similarity=0.102 Sum_probs=159.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
+++++|||||+|+||.+++++|+++|++|+++++...... +....+. ..+.++.++.+|++|.
T Consensus 2 ~~~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~----------------~~~~~~~-~~~~~~~~~~~d~~~~ 64 (250)
T TIGR03206 2 KDKTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAE----------------KVAADIR-AKGGNAQAFACDITDR 64 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHH----------------HHHHHHH-hcCCcEEEEEcCCCCH
Confidence 5789999999999999999999999999999987543110 1111111 1134688999999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccccc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEY 234 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~ 234 (479)
++++++++.. ++|+|||+||...... ...+.+++...+++|+.++.++++++. +.+.+ +||++||...+
T Consensus 65 ~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~ii~iss~~~~ 143 (250)
T TIGR03206 65 DSVDTAVAAAEQALGPVDVLVNNAGWDKFGPFTKTEPPLWERLIAINLTGALHMHHAVLPGMVERGAG-RIVNIASDAAR 143 (250)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCe-EEEEECchhhc
Confidence 9988887642 5899999999754322 222344566789999999999988775 34445 89999997665
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
+.. .....|+.+|++.+.+++.++++. ++++++++||.++++.....
T Consensus 144 ~~~------------------------~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~~~~~~~~------ 193 (250)
T TIGR03206 144 VGS------------------------SGEAVYAACKGGLVAFSKTMAREHARHGITVNVVCPGPTDTALLDDI------ 193 (250)
T ss_pred cCC------------------------CCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEecCcccchhHHhh------
Confidence 422 225689999999999999998874 89999999999988742110
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. +. . ....+...+....+ ...+...+|+|+++..++..+...-.++++++.++
T Consensus 194 ~~-----~~-~-~~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 247 (250)
T TIGR03206 194 CG-----GA-E-NPEKLREAFTRAIP---------LGRLGQPDDLPGAILFFSSDDASFITGQVLSVSGG 247 (250)
T ss_pred hh-----cc-C-ChHHHHHHHHhcCC---------ccCCcCHHHHHHHHHHHcCcccCCCcCcEEEeCCC
Confidence 00 00 0 00112222222211 12345679999999999876543212238888764
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=177.11 Aligned_cols=218 Identities=17% Similarity=0.082 Sum_probs=158.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|...... +.... +...++.++.+|++|
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~----------------~~~~~---~~~~~~~~~~~D~~~ 65 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLS----------------QTLPG---VPADALRIGGIDLVD 65 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHH----------------HHHHH---HhhcCceEEEeecCC
Confidence 45789999999999999999999999999999998543210 11111 112357788899999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
.+++.++++.. ++|+|||+||...... ...+++++...+++|+.++.++++++. +.+.+ +||++||...
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~ 144 (239)
T PRK12828 66 PQAARRAVDEVNRQFGRLDALVNIAGAFVWGTIADGDADTWDRMYGVNVKTTLNASKAALPALTASGGG-RIVNIGAGAA 144 (239)
T ss_pred HHHHHHHHHHHHHHhCCcCEEEECCcccCcCChhhCCHHHHHHHHHhhchhHHHHHHHHHHHHHhcCCC-EEEEECchHh
Confidence 99888887643 6899999999654322 222444556778899999999988875 34555 9999999776
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
++.. .+...|+.+|.+.+.+++.++.+ .+++++++|||+++++.....
T Consensus 145 ~~~~------------------------~~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~i~pg~v~~~~~~~~----- 195 (239)
T PRK12828 145 LKAG------------------------PGMGAYAAAKAGVARLTEALAAELLDRGITVNAVLPSIIDTPPNRAD----- 195 (239)
T ss_pred ccCC------------------------CCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCcchhhc-----
Confidence 6422 23578999999999999887765 489999999999998742100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. ......|++++|++++++.++.+....-.++.+++.++
T Consensus 196 -----------------------------~~--~~~~~~~~~~~dva~~~~~~l~~~~~~~~g~~~~~~g~ 235 (239)
T PRK12828 196 -----------------------------MP--DADFSRWVTPEQIAAVIAFLLSDEAQAITGASIPVDGG 235 (239)
T ss_pred -----------------------------CC--chhhhcCCCHHHHHHHHHHHhCcccccccceEEEecCC
Confidence 00 01122379999999999999986543212248888764
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.3e-20 Score=181.82 Aligned_cols=237 Identities=16% Similarity=0.049 Sum_probs=159.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|+++++..... .+..+.+. ...++.++.+|++
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~~~~~----------------~~~~~~~~--~~~~~~~~~~Dl~ 76 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIVDLQDDLG----------------QNVCDSLG--GEPNVCFFHCDVT 76 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH----------------HHHHHHhc--CCCceEEEEeecC
Confidence 35689999999999999999999999999999998753311 11111111 1246889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcc---cccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeec
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAP---YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~---~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS 230 (479)
|.++++++++.. ++|+||||||..... ....+.+++..++++|+.|+.++++++... +.+ ++|++||
T Consensus 77 d~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~ii~isS 155 (280)
T PLN02253 77 VEDDVSRAVDFTVDKFGTLDIMVNNAGLTGPPCPDIRNVELSEFEKVFDVNVKGVFLGMKHAARIMIPLKKG-SIVSLCS 155 (280)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCc-eEEEecC
Confidence 999998877642 699999999975422 122345567889999999999999887642 333 7888887
Q ss_pred c-ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 231 M-GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 231 ~-~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
. +.++.+ ....|+.+|++.|.+++.++.++ |+++++++||.+..+......
T Consensus 156 ~~~~~~~~-------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~v~t~~~~~~~ 210 (280)
T PLN02253 156 VASAIGGL-------------------------GPHAYTGSKHAVLGLTRSVAAELGKHGIRVNCVSPYAVPTALALAHL 210 (280)
T ss_pred hhhcccCC-------------------------CCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccccccccc
Confidence 4 334322 24579999999999999998875 799999999999876421100
Q ss_pred hhHhhhcccCCCCc-ccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGV-FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
+.+. ....+..+......+.++ ....++++|++++++.++......-.++++++.++
T Consensus 211 ----------~~~~~~~~~~~~~~~~~~~~~~l--------~~~~~~~~dva~~~~~l~s~~~~~i~G~~i~vdgG 268 (280)
T PLN02253 211 ----------PEDERTEDALAGFRAFAGKNANL--------KGVELTVDDVANAVLFLASDEARYISGLNLMIDGG 268 (280)
T ss_pred ----------ccccchhhhhhhhHHHhhcCCCC--------cCCCCCHHHHHHHHHhhcCcccccccCcEEEECCc
Confidence 0000 000111111111111110 12347899999999999875443212248888775
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.3e-21 Score=179.73 Aligned_cols=227 Identities=14% Similarity=0.055 Sum_probs=160.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++++++||||+|+||.++++.|+++|++|++++|..... +...+. .+..++.+|++
T Consensus 6 ~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~~~~~--------------------~~~~~~--~~~~~~~~D~~ 63 (245)
T PRK07060 6 DFSGKSVLVTGASSGIGRACAVALAQRGARVVAAARNAAAL--------------------DRLAGE--TGCEPLRLDVG 63 (245)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCCHHHH--------------------HHHHHH--hCCeEEEecCC
Confidence 35678999999999999999999999999999998753211 111111 13567889999
Q ss_pred ChHHHHHHhhhc-CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeeccccccC
Q 011707 163 DFEFLSESFKSF-EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMGEYGT 236 (479)
Q Consensus 163 d~~~~~~~~~~~-~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~v~g~ 236 (479)
+.+++.++++.. ++|+|||+||....... ..+..++...+.+|+.++.++++++.+. +...+||++||...+..
T Consensus 64 ~~~~v~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~~~~~ 143 (245)
T PRK07060 64 DDAAIRAALAAAGAFDGLVNCAGIASLESALDMTAEGFDRVMAVNARGAALVARHVARAMIAAGRGGSIVNVSSQAALVG 143 (245)
T ss_pred CHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCCcEEEEEccHHHcCC
Confidence 999998888753 48999999997543221 2234456777899999999999988653 21138999999654421
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
..+...|+.+|.+.|.+++.++.++ +++++.+|||.++++......
T Consensus 144 ------------------------~~~~~~y~~sK~a~~~~~~~~a~~~~~~~i~v~~v~pg~v~~~~~~~~~------- 192 (245)
T PRK07060 144 ------------------------LPDHLAYCASKAALDAITRVLCVELGPHGIRVNSVNPTVTLTPMAAEAW------- 192 (245)
T ss_pred ------------------------CCCCcHhHHHHHHHHHHHHHHHHHHhhhCeEEEEEeeCCCCCchhhhhc-------
Confidence 1235789999999999999998764 799999999999988532100
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. ......+... .....|++++|++++++.++..+...-.++++++.++
T Consensus 193 --------~~--~~~~~~~~~~---------~~~~~~~~~~d~a~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK07060 193 --------SD--PQKSGPMLAA---------IPLGRFAEVDDVAAPILFLLSDAASMVSGVSLPVDGG 241 (245)
T ss_pred --------cC--HHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCcccCCccCcEEeECCC
Confidence 00 0001111111 1124589999999999999986544322348888764
|
|
| >PRK12827 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-20 Score=175.56 Aligned_cols=230 Identities=17% Similarity=0.115 Sum_probs=159.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.++++.|+++|++|+++++....... ...+....... .+.++.++.+|++|
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~------------~~~~~~~~~~~-~~~~~~~~~~Dl~~ 70 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRA------------EADAVAAGIEA-AGGKALGLAFDVRD 70 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHH------------HHHHHHHHHHh-cCCcEEEEEccCCC
Confidence 357899999999999999999999999999998864321100 01111111111 13468899999999
Q ss_pred hHHHHHHhhh-----cCCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH-----HcCCcceEEEeeccc
Q 011707 164 FEFLSESFKS-----FEPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK-----EFRQECHLVKLGTMG 232 (479)
Q Consensus 164 ~~~~~~~~~~-----~~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~-----~~g~~~~~V~~SS~~ 232 (479)
.++++++++. .++|+||||||...... ...+.+++...+++|+.++.++++++. +.+.+ +||++||..
T Consensus 71 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-~iv~~sS~~ 149 (249)
T PRK12827 71 FAATRAALDAGVEEFGRLDILVNNAGIATDAAFAELSIEEWDDVIDVNLDGFFNVTQAALPPMIRARRGG-RIVNIASVA 149 (249)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCe-EEEEECCch
Confidence 9998888753 26899999999765322 223445567789999999999999997 34445 899999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+.. ..+...|+.+|++.+.+++.++.+. +++++++|||.+.++.....
T Consensus 150 ~~~~------------------------~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~~---- 201 (249)
T PRK12827 150 GVRG------------------------NRGQVNYAASKAGLIGLTKTLANELAPRGITVNAVAPGAINTPMADNA---- 201 (249)
T ss_pred hcCC------------------------CCCCchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEEECCcCCCccccc----
Confidence 4421 1235789999999999999888763 89999999999999864321
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
... ..+....+ ...+.+++|++++++.++........++++++.++
T Consensus 202 --------------~~~---~~~~~~~~---------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~g 247 (249)
T PRK12827 202 --------------APT---EHLLNPVP---------VQRLGEPDEVAALVAFLVSDAASYVTGQVIPVDGG 247 (249)
T ss_pred --------------chH---HHHHhhCC---------CcCCcCHHHHHHHHHHHcCcccCCccCcEEEeCCC
Confidence 000 11111111 11345889999999998865433322238888764
|
|
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=177.15 Aligned_cols=235 Identities=17% Similarity=0.134 Sum_probs=155.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc-cCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS-LTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~ 162 (479)
+++|+||||||+|+||.++++.|+++|++|++++|..... .+....+.. .....+.++.+|++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~~Dl~ 65 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEAL----------------NELLESLGKEFKSKKLSLVELDIT 65 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHH----------------HHHHHHHHhhcCCCceeEEEecCC
Confidence 3579999999999999999999999999999987754311 111111111 11235667899999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc----ccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEee
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA----PYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLG 229 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~S 229 (479)
|++++.++++.. ++|+|||||+.... .....+.+++...+++|+.++..+++++. +.+.+ +||++|
T Consensus 66 d~~~~~~~~~~~~~~~~~id~vi~~A~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~s 144 (256)
T PRK09186 66 DQESLEEFLSKSAEKYGKIDGAVNCAYPRNKDYGKKFFDVSLDDFNENLSLHLGSSFLFSQQFAKYFKKQGGG-NLVNIS 144 (256)
T ss_pred CHHHHHHHHHHHHHHcCCccEEEECCccccccccCccccCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc-eEEEEe
Confidence 999998888743 38999999975321 11223344567778999998887776664 34555 999999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|...+..+.....++ .+......|+.+|++.+.+++.++.+ .|+++++++||.++++...
T Consensus 145 S~~~~~~~~~~~~~~--------------~~~~~~~~Y~~sK~a~~~l~~~la~e~~~~~i~v~~i~Pg~~~~~~~~--- 207 (256)
T PRK09186 145 SIYGVVAPKFEIYEG--------------TSMTSPVEYAAIKAGIIHLTKYLAKYFKDSNIRVNCVSPGGILDNQPE--- 207 (256)
T ss_pred chhhhccccchhccc--------------cccCCcchhHHHHHHHHHHHHHHHHHhCcCCeEEEEEecccccCCCCH---
Confidence 954433222111111 12222347999999999999988886 4799999999988765310
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.+........ ....+++++|+|++++.++........++++++.++
T Consensus 208 --------------------~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~~g 253 (256)
T PRK09186 208 --------------------AFLNAYKKCC---------NGKGMLDPDDICGTLVFLLSDQSKYITGQNIIVDDG 253 (256)
T ss_pred --------------------HHHHHHHhcC---------CccCCCCHHHhhhhHhheeccccccccCceEEecCC
Confidence 1111111110 112578999999999999976543211237776654
|
|
| >PRK08628 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-21 Score=181.54 Aligned_cols=241 Identities=13% Similarity=0.046 Sum_probs=162.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.++++++|||||+|+||.+++++|+++|++|+++++..... +..+.+.. .+.++.++.+|++
T Consensus 4 ~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~-----------------~~~~~~~~-~~~~~~~~~~D~~ 65 (258)
T PRK08628 4 NLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDD-----------------EFAEELRA-LQPRAEFVQVDLT 65 (258)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhH-----------------HHHHHHHh-cCCceEEEEccCC
Confidence 46789999999999999999999999999999988754311 11111111 1346889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHH---cCCcceEEEeeccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKE---FRQECHLVKLGTMGEY 234 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~---~g~~~~~V~~SS~~v~ 234 (479)
+++++++++++. ++|+||||||...........+++...+++|+.++.++++.+.. .+.+ +||++||...+
T Consensus 66 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~iv~~ss~~~~ 144 (258)
T PRK08628 66 DDAQCRDAVEQTVAKFGRIDGLVNNAGVNDGVGLEAGREAFVASLERNLIHYYVMAHYCLPHLKASRG-AIVNISSKTAL 144 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCcccCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhhccCc-EEEEECCHHhc
Confidence 999998888643 68999999996432222222256777899999999999888754 2234 89999995433
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
. +..+...|+.+|++.+.+++.++.+ .+++++.++||+|+++.....
T Consensus 145 ~------------------------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~pg~v~t~~~~~~------ 194 (258)
T PRK08628 145 T------------------------GQGGTSGYAAAKGAQLALTREWAVALAKDGVRVNAVIPAEVMTPLYENW------ 194 (258)
T ss_pred c------------------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCHHHHHH------
Confidence 1 1123678999999999999998875 489999999999998842110
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHH
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQ 387 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~e 387 (479)
... +.. .......+....+ . + ..++.++|++++++.++........+..+.+.++...+++
T Consensus 195 ~~~------~~~-~~~~~~~~~~~~~--~---~---~~~~~~~dva~~~~~l~~~~~~~~~g~~~~~~gg~~~~~~ 255 (258)
T PRK08628 195 IAT------FDD-PEAKLAAITAKIP--L---G---HRMTTAEEIADTAVFLLSERSSHTTGQWLFVDGGYVHLDR 255 (258)
T ss_pred hhh------ccC-HHHHHHHHHhcCC--c---c---ccCCCHHHHHHHHHHHhChhhccccCceEEecCCcccccc
Confidence 000 000 0011111111111 0 0 2468899999999999976533212237777665555444
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=176.13 Aligned_cols=226 Identities=14% Similarity=0.094 Sum_probs=156.5
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..+++|+||||||+|+||+++++.|+++|++|+++++..... ....+..+.++.++.+|+
T Consensus 6 ~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~Dl 65 (255)
T PRK05717 6 PGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLADLDRERG--------------------SKVAKALGENAWFIAMDV 65 (255)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHH--------------------HHHHHHcCCceEEEEccC
Confidence 356789999999999999999999999999999998753211 001111124678899999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCcc---cccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeec
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAP---YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~---~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS 230 (479)
+|.+++.++++.. ++|+||||||..... ....+.+++..++++|+.++.++++++... ..+ +||++||
T Consensus 66 ~~~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g-~ii~~sS 144 (255)
T PRK05717 66 ADEAQVAAGVAEVLGQFGRLDALVCNAAIADPHNTTLESLSLAHWNRVLAVNLTGPMLLAKHCAPYLRAHNG-AIVNLAS 144 (255)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCCcccCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCc-EEEEEcc
Confidence 9998886665532 589999999975421 112344566788999999999999999642 223 8999998
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCCCCchhhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
...+. +......|+.+|++.+.+++.++.++ ++++++++||.+.++.....
T Consensus 145 ~~~~~------------------------~~~~~~~Y~~sKaa~~~~~~~la~~~~~~i~v~~i~Pg~i~t~~~~~~--- 197 (255)
T PRK05717 145 TRARQ------------------------SEPDTEAYAASKGGLLALTHALAISLGPEIRVNAVSPGWIDARDPSQR--- 197 (255)
T ss_pred hhhcC------------------------CCCCCcchHHHHHHHHHHHHHHHHHhcCCCEEEEEecccCcCCccccc---
Confidence 54332 11225689999999999999999886 58999999999988753210
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
....+.. ..... .....+.+++|++.++..++..... .|+ ++.+.++
T Consensus 198 ---------------~~~~~~~-~~~~~--------~~~~~~~~~~~va~~~~~l~~~~~~~~~g~--~~~~~gg 246 (255)
T PRK05717 198 ---------------RAEPLSE-ADHAQ--------HPAGRVGTVEDVAAMVAWLLSRQAGFVTGQ--EFVVDGG 246 (255)
T ss_pred ---------------cchHHHH-HHhhc--------CCCCCCcCHHHHHHHHHHHcCchhcCccCc--EEEECCC
Confidence 0001111 00010 0112467899999999988865432 344 7777654
|
|
| >PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-20 Score=178.51 Aligned_cols=227 Identities=15% Similarity=0.091 Sum_probs=158.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|+++++.... ..+.++.++++|++|
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~~~--------------------------~~~~~~~~~~~D~~~ 59 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAFLT--------------------------QEDYPFATFVLDVSD 59 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEecchhh--------------------------hcCCceEEEEecCCC
Confidence 567999999999999999999999999999999875300 012468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
.+++.+++++. .+|+||||||....... ..+.+++...+++|+.++.++++++.. .+.+ +||++||...
T Consensus 60 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g-~iv~~ss~~~ 138 (252)
T PRK08220 60 AAAVAQVCQRLLAETGPLDVLVNAAGILRMGATDSLSDEDWQQTFAVNAGGAFNLFRAVMPQFRRQRSG-AIVTVGSNAA 138 (252)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC-EEEEECCchh
Confidence 99998887642 48999999997543322 224456778899999999999998753 3444 8999999643
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
.. +..+...|+.+|++.+.+++.++.+ +|+++++++||.++++....-.
T Consensus 139 ~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~---- 190 (252)
T PRK08220 139 HV------------------------PRIGMAAYGASKAALTSLAKCVGLELAPYGVRCNVVSPGSTDTDMQRTLW---- 190 (252)
T ss_pred cc------------------------CCCCCchhHHHHHHHHHHHHHHHHHhhHhCeEEEEEecCcCcchhhhhhc----
Confidence 21 2234688999999999999999887 6899999999999998532100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
+. .......+......... ......+++++|++++++.++..... .|+ ++.+.++
T Consensus 191 --~~---~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~dva~~~~~l~~~~~~~~~g~--~i~~~gg 247 (252)
T PRK08220 191 --VD---EDGEQQVIAGFPEQFKL---------GIPLGKIARPQEIANAVLFLASDLASHITLQ--DIVVDGG 247 (252)
T ss_pred --cc---hhhhhhhhhhHHHHHhh---------cCCCcccCCHHHHHHHHHHHhcchhcCccCc--EEEECCC
Confidence 00 00000000001111111 12234689999999999999875432 333 5555543
|
|
| >PRK07985 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.1e-20 Score=180.29 Aligned_cols=233 Identities=14% Similarity=0.081 Sum_probs=160.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|+++++..... ..+.+.......+.++.++.+|++|
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~Dl~~ 111 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEE---------------DAQDVKKIIEECGRKAVLLPGDLSD 111 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchh---------------hHHHHHHHHHHcCCeEEEEEccCCC
Confidence 5789999999999999999999999999999876532210 0011111111123467889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeecccccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEYG 235 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~g 235 (479)
.+++.++++.. ++|++|||||.... .....+++++..++++|+.|+.++++++... ..+.+||++||...+.
T Consensus 112 ~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iSS~~~~~ 191 (294)
T PRK07985 112 EKFARSLVHEAHKALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTSSIQAYQ 191 (294)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEECCchhcc
Confidence 99888776643 58999999996421 2223355677889999999999999998653 1123899999976553
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
. ......|+.+|++.+.+++.++.+ .|+++++++||+|.++......
T Consensus 192 ~------------------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~i~PG~v~t~~~~~~~------ 241 (294)
T PRK07985 192 P------------------------SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGG------ 241 (294)
T ss_pred C------------------------CCCcchhHHHHHHHHHHHHHHHHHHhHhCcEEEEEECCcCccccccccC------
Confidence 2 122568999999999999999887 4899999999999988531100
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
............ .....+...+|++++++.++......-.+.++.+.++
T Consensus 242 -----------~~~~~~~~~~~~---------~~~~r~~~pedva~~~~fL~s~~~~~itG~~i~vdgG 290 (294)
T PRK07985 242 -----------QTQDKIPQFGQQ---------TPMKRAGQPAELAPVYVYLASQESSYVTAEVHGVCGG 290 (294)
T ss_pred -----------CCHHHHHHHhcc---------CCCCCCCCHHHHHHHHHhhhChhcCCccccEEeeCCC
Confidence 001111111111 1122457799999999999876543212237777764
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-20 Score=177.10 Aligned_cols=228 Identities=14% Similarity=0.044 Sum_probs=157.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|.... ..++.++.+|++|
T Consensus 4 l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~r~~~~----------------------------~~~~~~~~~D~~~ 55 (258)
T PRK06398 4 LKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFDIKEPS----------------------------YNDVDYFKVDVSN 55 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCccc----------------------------cCceEEEEccCCC
Confidence 568999999999999999999999999999999875321 1257889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++.+ .+.+ +||++||...
T Consensus 56 ~~~i~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g-~iv~isS~~~ 134 (258)
T PRK06398 56 KEQVIKGIDYVISKYGRIDILVNNAGIESYGAIHAVEEDEWDRIINVNVNGIFLMSKYTIPYMLKQDKG-VIINIASVQS 134 (258)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe-EEEEeCcchh
Confidence 99888877643 6999999999754322 2335567788899999999999888754 3444 9999999654
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCCCCchhhhHhh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
+. +..+...|+.+|++.+.+++.++.++ ++++++++||.|-.+.......
T Consensus 135 ~~------------------------~~~~~~~Y~~sKaal~~~~~~la~e~~~~i~vn~i~PG~v~T~~~~~~~~---- 186 (258)
T PRK06398 135 FA------------------------VTRNAAAYVTSKHAVLGLTRSIAVDYAPTIRCVAVCPGSIRTPLLEWAAE---- 186 (258)
T ss_pred cc------------------------CCCCCchhhhhHHHHHHHHHHHHHHhCCCCEEEEEecCCccchHHhhhhh----
Confidence 42 22346789999999999999999886 4899999999886653210000
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
. ..+.-.......+... ........+...+|++++++.++......-.++++.+.++
T Consensus 187 ---~-~~~~~~~~~~~~~~~~---------~~~~~~~~~~~p~eva~~~~~l~s~~~~~~~G~~i~~dgg 243 (258)
T PRK06398 187 ---L-EVGKDPEHVERKIREW---------GEMHPMKRVGKPEEVAYVVAFLASDLASFITGECVTVDGG 243 (258)
T ss_pred ---c-cccCChhhhHHHHHhh---------hhcCCcCCCcCHHHHHHHHHHHcCcccCCCCCcEEEECCc
Confidence 0 0000000000001111 1111223467899999999998875433212237776654
|
|
| >PRK09134 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-20 Score=175.80 Aligned_cols=225 Identities=14% Similarity=0.091 Sum_probs=156.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+|++|||||+|+||.+++++|+++|++|+++++...... ........ ..+.++.++.+|++|.
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~~Dl~d~ 71 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEA---------------EALAAEIR-ALGRRAVALQADLADE 71 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHH---------------HHHHHHHH-hcCCeEEEEEcCCCCH
Confidence 5789999999999999999999999999988776432110 01111111 1234688899999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHHHcC---CcceEEEeecccccc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR---QECHLVKLGTMGEYG 235 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g---~~~~~V~~SS~~v~g 235 (479)
+++.++++.. ++|+||||||..... ....+.+++..++++|+.|+.++++++.... ...++|+++|...+.
T Consensus 72 ~~~~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~iv~~~s~~~~~ 151 (258)
T PRK09134 72 AEVRALVARASAALGPITLLVNNASLFEYDSAASFTRASWDRHMATNLRAPFVLAQAFARALPADARGLVVNMIDQRVWN 151 (258)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCcCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCceEEEECchhhcC
Confidence 9988887642 589999999975432 2223445567889999999999999886532 223888888754332
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
. ......|+.+|.+.|.+++.+++++ ++++++++||.+.......
T Consensus 152 ~------------------------~p~~~~Y~~sK~a~~~~~~~la~~~~~~i~v~~i~PG~v~t~~~~~--------- 198 (258)
T PRK09134 152 L------------------------NPDFLSYTLSKAALWTATRTLAQALAPRIRVNAIGPGPTLPSGRQS--------- 198 (258)
T ss_pred C------------------------CCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEeecccccCCcccC---------
Confidence 1 1124579999999999999998875 4899999999886543210
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
...+ .......+ .....+++|+|++++.+++.+...|+ .|++.++
T Consensus 199 -----------~~~~-~~~~~~~~---------~~~~~~~~d~a~~~~~~~~~~~~~g~--~~~i~gg 243 (258)
T PRK09134 199 -----------PEDF-ARQHAATP---------LGRGSTPEEIAAAVRYLLDAPSVTGQ--MIAVDGG 243 (258)
T ss_pred -----------hHHH-HHHHhcCC---------CCCCcCHHHHHHHHHHHhcCCCcCCC--EEEECCC
Confidence 1111 11221111 11247799999999999997666666 8888874
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=179.15 Aligned_cols=225 Identities=15% Similarity=0.074 Sum_probs=159.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... +.. .......+..+.+|+++
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~~~~~-----------------~~~---~~~~~~~~~~~~~Dl~~ 72 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGARVALLDRSEDVA-----------------EVA---AQLLGGNAKGLVCDVSD 72 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH-----------------HHH---HHhhCCceEEEEecCCC
Confidence 5689999999999999999999999999999998753210 001 11122456789999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc-
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG- 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~- 232 (479)
++++++++++. ++|+||||||....... ..+.+++.+.+++|+.|+.++++++.. .+.+ +||++||..
T Consensus 73 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~ 151 (255)
T PRK06841 73 SQSVEAAVAAVISAFGRIDILVNSAGVALLAPAEDVSEEDWDKTIDINLKGSFLMAQAVGRHMIAAGGG-KIVNLASQAG 151 (255)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCc-eEEEEcchhh
Confidence 99888887643 68999999997643322 234456677899999999999998864 2444 999999954
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.++. .....|+.+|++.+.+++.++.++ |++++.++||.|..+......
T Consensus 152 ~~~~-------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~--- 203 (255)
T PRK06841 152 VVAL-------------------------ERHVAYCASKAGVVGMTKVLALEWGPYGITVNAISPTVVLTELGKKAW--- 203 (255)
T ss_pred ccCC-------------------------CCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCcCcCccccccc---
Confidence 3332 225689999999999999998874 899999999998776422100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
. .......... .....+.+++|++++++.++..+...-.++++.+.++
T Consensus 204 ------------~---~~~~~~~~~~---------~~~~~~~~~~~va~~~~~l~~~~~~~~~G~~i~~dgg 251 (255)
T PRK06841 204 ------------A---GEKGERAKKL---------IPAGRFAYPEEIAAAALFLASDAAAMITGENLVIDGG 251 (255)
T ss_pred ------------c---hhHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCccccCccCCEEEECCC
Confidence 0 0011111111 1123578999999999999976544212237877764
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-20 Score=175.87 Aligned_cols=231 Identities=16% Similarity=0.118 Sum_probs=159.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... ......+. ..+.++.++.+|++
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~~i~-~~~~~~~~~~~Dl~ 71 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEEL----------------EEAAAHLE-ALGIDALWIAADVA 71 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH----------------HHHHHHHH-hcCCeEEEEEccCC
Confidence 35689999999999999999999999999999998754311 01111111 12346788999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHHc-----CCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKEF-----RQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-----g~~~~~V~~SS~ 231 (479)
|+++++++++.. .+|+||||||....... ..+.+.+...+++|+.++.++++++... +.+ +||++||.
T Consensus 72 d~~~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~l~~~~~~-~~v~~sS~ 150 (259)
T PRK08213 72 DEADIERLAEETLERFGHVDILVNNAGATWGAPAEDHPVEAWDKVMNLNVRGLFLLSQAVAKRSMIPRGYG-RIINVASV 150 (259)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhHHhHHHHHHHHHHHHHHHHhcCCe-EEEEECCh
Confidence 999997766542 68999999997543222 2233456778899999999999988654 445 89999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+.... ....+...|+.+|++.|.+++.+++++ |+++++++|+.+-.+...
T Consensus 151 ~~~~~~~--------------------~~~~~~~~Y~~sKa~~~~~~~~~a~~~~~~gi~v~~v~Pg~~~t~~~~----- 205 (259)
T PRK08213 151 AGLGGNP--------------------PEVMDTIAYNTSKGAVINFTRALAAEWGPHGIRVNAIAPGFFPTKMTR----- 205 (259)
T ss_pred hhccCCC--------------------ccccCcchHHHHHHHHHHHHHHHHHHhcccCEEEEEEecCcCCCcchh-----
Confidence 5442211 011235789999999999999998874 799999999888665321
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
..+..+........++ .-+...+|++.++..++..... .|+ ++++.++
T Consensus 206 --------------~~~~~~~~~~~~~~~~---------~~~~~~~~va~~~~~l~~~~~~~~~G~--~~~~~~~ 255 (259)
T PRK08213 206 --------------GTLERLGEDLLAHTPL---------GRLGDDEDLKGAALLLASDASKHITGQ--ILAVDGG 255 (259)
T ss_pred --------------hhhHHHHHHHHhcCCC---------CCCcCHHHHHHHHHHHhCccccCccCC--EEEECCC
Confidence 1122333333333222 2345689999998888865433 344 7777654
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.7e-20 Score=176.27 Aligned_cols=229 Identities=19% Similarity=0.111 Sum_probs=155.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+. .+.++.++.+|++|
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~----------------~~~~~~----~~~~~~~~~~D~~~ 63 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASL----------------EAARAE----LGESALVIRADAGD 63 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHH----------------HHHHHH----hCCceEEEEecCCC
Confidence 3578999999999999999999999999999988753211 011111 13467889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc--CCcceEEEeec-cccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF--RQECHLVKLGT-MGEY 234 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--g~~~~~V~~SS-~~v~ 234 (479)
.+++.++++.. ++|+||||||...... ...+.+++..++++|+.++.++++++... ... ++|++|| .+.|
T Consensus 64 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~-~~i~~~S~~~~~ 142 (249)
T PRK06500 64 VAAQKALAQALAEAFGRLDAVFINAGVAKFAPLEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPA-SIVLNGSINAHI 142 (249)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCC-EEEEEechHhcc
Confidence 98877665532 6899999999754332 23355567788999999999999999752 223 6777776 4555
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
+.+ ....|+.+|++.|.+++.++.++ |++++++|||++++|.....
T Consensus 143 ~~~-------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~pg~~~t~~~~~~------ 191 (249)
T PRK06500 143 GMP-------------------------NSSVYAASKAALLSLAKTLSGELLPRGIRVNAVSPGPVQTPLYGKL------ 191 (249)
T ss_pred CCC-------------------------CccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCCCHHHHhh------
Confidence 432 25789999999999999988765 89999999999998842100
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
+........+...+..+.++ .-+..++|++++++.++........+..+.+.+
T Consensus 192 -------~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~va~~~~~l~~~~~~~~~g~~i~~~g 244 (249)
T PRK06500 192 -------GLPEATLDAVAAQIQALVPL---------GRFGTPEEIAKAVLYLASDESAFIVGSEIIVDG 244 (249)
T ss_pred -------ccCccchHHHHHHHHhcCCC---------CCCcCHHHHHHHHHHHcCccccCccCCeEEECC
Confidence 00001112222333322221 124588999999999887543221112555544
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.86 E-value=6e-20 Score=173.89 Aligned_cols=227 Identities=11% Similarity=0.077 Sum_probs=158.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|.... ...+... . .+.++.++.+|+++
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~~~---------------~~~~~~~---~-~~~~~~~~~~D~~~ 63 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGADIVGAGRSEPS---------------ETQQQVE---A-LGRRFLSLTADLSD 63 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCchHH---------------HHHHHHH---h-cCCceEEEECCCCC
Confidence 568999999999999999999999999999999874311 0111111 1 13468899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
.+++.++++.. ++|+||||||....... ..+..++.+.+++|+.++.++++++.. .+...+||++||...
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~ 143 (248)
T TIGR01832 64 IEAIKALVDSAVEEFGHIDILVNNAGIIRRADAEEFSEKDWDDVMNVNLKSVFFLTQAAAKHFLKQGRGGKIINIASMLS 143 (248)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEEecHHh
Confidence 99998777642 59999999997543222 223345677899999999999998854 231238999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+... .....|+.+|++.+.+++.+++++ |+++++++||.|..+....-.
T Consensus 144 ~~~~------------------------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~---- 195 (248)
T TIGR01832 144 FQGG------------------------IRVPSYTASKHGVAGLTKLLANEWAAKGINVNAIAPGYMATNNTQALR---- 195 (248)
T ss_pred ccCC------------------------CCCchhHHHHHHHHHHHHHHHHHhCccCcEEEEEEECcCcCcchhccc----
Confidence 5321 224679999999999999999885 899999999999876421100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.. .......... .....|+..+|+|++++.++..... .|+ ++.+.++
T Consensus 196 -----------~~--~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~s~~~~~~~G~--~i~~dgg 244 (248)
T TIGR01832 196 -----------AD--EDRNAAILER---------IPAGRWGTPDDIGGPAVFLASSASDYVNGY--TLAVDGG 244 (248)
T ss_pred -----------cC--hHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCccccCcCCc--EEEeCCC
Confidence 00 0000111111 1124689999999999999975443 244 6666544
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.6e-20 Score=172.87 Aligned_cols=228 Identities=15% Similarity=0.103 Sum_probs=157.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|+++.+..... .......+. ..+.++.++.+|+++
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~Dl~~ 66 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGANVVINYASSEAG---------------AEALVAEIG-ALGGKALAVQGDVSD 66 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhH---------------HHHHHHHHH-hcCCceEEEEcCCCC
Confidence 4578999999999999999999999999998887643210 001111111 123578889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeecc-c
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTM-G 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~-~ 232 (479)
.+++.+++++. ++|+|||+||....... ..+++++...+.+|+.++.++++++... +.+ +||++||. +
T Consensus 67 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~v~iss~~~ 145 (248)
T PRK05557 67 AESVERAVDEAKAEFGGVDILVNNAGITRDNLLMRMKEEDWDRVIDTNLTGVFNLTKAVARPMMKQRSG-RIINISSVVG 145 (248)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCe-EEEEEccccc
Confidence 99988877642 68999999997553322 2244456677899999999999888653 344 89999984 4
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
+++.+ ....|+.+|.+.+.+++.++++ .++++++++||.+.++...+
T Consensus 146 ~~~~~-------------------------~~~~y~~sk~a~~~~~~~~a~~~~~~~i~~~~v~pg~~~~~~~~~----- 195 (248)
T PRK05557 146 LMGNP-------------------------GQANYAASKAGVIGFTKSLARELASRGITVNAVAPGFIETDMTDA----- 195 (248)
T ss_pred CcCCC-------------------------CCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCccCCccccc-----
Confidence 44432 2578999999999999887765 37999999999886553211
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
....+........+ ...+.+++|+++++..++......-.+++|++.++
T Consensus 196 --------------~~~~~~~~~~~~~~---------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~i~~~ 244 (248)
T PRK05557 196 --------------LPEDVKEAILAQIP---------LGRLGQPEEIASAVAFLASDEAAYITGQTLHVNGG 244 (248)
T ss_pred --------------cChHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHcCcccCCccccEEEecCC
Confidence 11122222222211 22467999999999888866332212249998764
|
|
| >PRK06523 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.5e-20 Score=174.15 Aligned_cols=232 Identities=15% Similarity=0.099 Sum_probs=156.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... ...++.++.+|++
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~r~~~~~--------------------------~~~~~~~~~~D~~ 59 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGARVVTTARSRPDD--------------------------LPEGVEFVAADLT 59 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEeCChhhh--------------------------cCCceeEEecCCC
Confidence 35689999999999999999999999999999998753310 1135788999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcc---cccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeec
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAP---YSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~---~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS 230 (479)
|.++++++++.. ++|+||||||..... ....+.+++...+++|+.|+.++++++. +.+.+ +||++||
T Consensus 60 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~ii~isS 138 (260)
T PRK06523 60 TAEGCAAVARAVLERLGGVDILVHVLGGSSAPAGGFAALTDEEWQDELNLNLLAAVRLDRALLPGMIARGSG-VIIHVTS 138 (260)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCcccccCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCc-EEEEEec
Confidence 999887766532 689999999964321 1223445677889999999988876653 34444 8999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
...+... ......|+.+|++.+.+++.++.++ |+++++++||.|..+......
T Consensus 139 ~~~~~~~-----------------------~~~~~~Y~~sK~a~~~l~~~~a~~~~~~gi~v~~i~Pg~v~t~~~~~~~- 194 (260)
T PRK06523 139 IQRRLPL-----------------------PESTTAYAAAKAALSTYSKSLSKEVAPKGVRVNTVSPGWIETEAAVALA- 194 (260)
T ss_pred ccccCCC-----------------------CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccHHHHH-
Confidence 6543210 1236789999999999999998774 799999999999887532100
Q ss_pred hHhhhcccCCCCcccchHHHHHHHH---hcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQA---AVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
..+... . ..........+ ..+. ....+...+|++++++.++......-.++++++.++
T Consensus 195 -~~~~~~---~---~~~~~~~~~~~~~~~~~~---------p~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~vdgg 255 (260)
T PRK06523 195 -ERLAEA---A---GTDYEGAKQIIMDSLGGI---------PLGRPAEPEEVAELIAFLASDRAASITGTEYVIDGG 255 (260)
T ss_pred -HHHHhh---c---CCCHHHHHHHHHHHhccC---------ccCCCCCHHHHHHHHHHHhCcccccccCceEEecCC
Confidence 000000 0 00001111111 1111 112356789999999999976433222238888774
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.3e-20 Score=175.15 Aligned_cols=228 Identities=17% Similarity=0.098 Sum_probs=156.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|.... .+......+.++.++.+|++|
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--------------------~~~~~~~~~~~~~~~~~Dl~~ 63 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADN--------------------GAAVAASLGERARFIATDITD 63 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH--------------------HHHHHHHhCCeeEEEEecCCC
Confidence 467899999999999999999999999999999885431 111111113468899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHH---cCCcceEEEeecccc-c
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKE---FRQECHLVKLGTMGE-Y 234 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~---~g~~~~~V~~SS~~v-~ 234 (479)
.++++++++.. .+|+||||||.........+.+++.+.+++|+.++.++++++.. .+.+ +||++||... +
T Consensus 64 ~~~~~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g-~ii~isS~~~~~ 142 (261)
T PRK08265 64 DAAIERAVATVVARFGRVDILVNLACTYLDDGLASSRADWLAALDVNLVSAAMLAQAAHPHLARGGG-AIVNFTSISAKF 142 (261)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCcCcCCHHHHHHHHhHhhHHHHHHHHHHHHHHhcCCc-EEEEECchhhcc
Confidence 99988887643 68999999997543222335567788899999999999988754 2233 8999998543 3
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
+. .....|+.+|++.+.+++.++.++ |+++++++||.+..+....-
T Consensus 143 ~~-------------------------~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~~~t~~~~~~------ 191 (261)
T PRK08265 143 AQ-------------------------TGRWLYPASKAAIRQLTRSMAMDLAPDGIRVNSVSPGWTWSRVMDEL------ 191 (261)
T ss_pred CC-------------------------CCCchhHHHHHHHHHHHHHHHHHhcccCEEEEEEccCCccChhhhhh------
Confidence 22 225689999999999999998774 79999999998765531100
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.... .......... ......+...+|+|++++.++......-.++++.+.++
T Consensus 192 ---------~~~~-~~~~~~~~~~--------~~p~~r~~~p~dva~~~~~l~s~~~~~~tG~~i~vdgg 243 (261)
T PRK08265 192 ---------SGGD-RAKADRVAAP--------FHLLGRVGDPEEVAQVVAFLCSDAASFVTGADYAVDGG 243 (261)
T ss_pred ---------cccc-hhHHHHhhcc--------cCCCCCccCHHHHHHHHHHHcCccccCccCcEEEECCC
Confidence 0000 0000111000 01122356789999999999976443212237777664
|
|
| >PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.6e-20 Score=173.29 Aligned_cols=227 Identities=15% Similarity=0.062 Sum_probs=155.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.++++.|+++|++|+++++..... .+.+......++.++.+|++|
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~D~~~ 63 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSEDA-------------------AEALADELGDRAIALQADVTD 63 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHHH-------------------HHHHHHHhCCceEEEEcCCCC
Confidence 4578999999999999999999999999998766532210 111111112468889999999
Q ss_pred hHHHHHHhhhc-----C-CCEEEEcccccCc-------ccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEE
Q 011707 164 FEFLSESFKSF-----E-PDAVVHFGEQRSA-------PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLV 226 (479)
Q Consensus 164 ~~~~~~~~~~~-----~-~D~Vih~A~~~~~-------~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V 226 (479)
++++.++++.. . +|+||||||.... .....+.+++...+++|+.++.++++++.. .+.+ +||
T Consensus 64 ~~~~~~~~~~~~~~~g~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g-~iv 142 (253)
T PRK08642 64 REQVQAMFATATEHFGKPITTVVNNALADFSFDGDARKKADDITWEDFQQQLEGSVKGALNTIQAALPGMREQGFG-RII 142 (253)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEECCCccccccccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHHHHhcCCe-EEE
Confidence 99988887643 2 8999999986321 111223345677899999999999998853 3444 899
Q ss_pred EeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCC
Q 011707 227 KLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTD 303 (479)
Q Consensus 227 ~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~ 303 (479)
++||..... +..+...|+.+|++.|.+++.+++++ |++++.++||.+..+...
T Consensus 143 ~iss~~~~~------------------------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~i~pG~v~t~~~~ 198 (253)
T PRK08642 143 NIGTNLFQN------------------------PVVPYHDYTTAKAALLGLTRNLAAELGPYGITVNMVSGGLLRTTDAS 198 (253)
T ss_pred EECCccccC------------------------CCCCccchHHHHHHHHHHHHHHHHHhCccCeEEEEEeecccCCchhh
Confidence 999853221 22346789999999999999999874 799999999988654211
Q ss_pred chhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 304 ETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 304 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. .............+ ...+.+.+|++++++.++..+...-.+.++.+.++
T Consensus 199 ~~------------------~~~~~~~~~~~~~~---------~~~~~~~~~va~~~~~l~~~~~~~~~G~~~~vdgg 249 (253)
T PRK08642 199 AA------------------TPDEVFDLIAATTP---------LRKVTTPQEFADAVLFFASPWARAVTGQNLVVDGG 249 (253)
T ss_pred cc------------------CCHHHHHHHHhcCC---------cCCCCCHHHHHHHHHHHcCchhcCccCCEEEeCCC
Confidence 00 00111111211111 23578999999999999975443222237777664
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.5e-20 Score=174.45 Aligned_cols=212 Identities=18% Similarity=0.096 Sum_probs=151.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+++||||||+|+||.++++.|+++|++|++++|..... .+..+.+.. .+.++.++.+|++|.+
T Consensus 1 ~~~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~Dl~~~~ 63 (263)
T PRK06181 1 GKVVIITGASEGIGRALAVRLARAGAQLVLAARNETRL----------------ASLAQELAD-HGGEALVVPTDVSDAE 63 (263)
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEEccCCCHH
Confidence 46899999999999999999999999999998754311 111111111 2347888999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCcccc-cc-cccccchhhhhhHHHHHHHHHHHHH---cCCcceEEEeecccccc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPYS-MI-DRSRAVFTQHNNVIGTLNVLFAMKE---FRQECHLVKLGTMGEYG 235 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~-~~~~~~~~~~~Nv~g~~~ll~~a~~---~g~~~~~V~~SS~~v~g 235 (479)
++.++++.. ++|+||||||....... .. +++++...+++|+.++.++++.+.. .+.+ +||++||...+.
T Consensus 64 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~-~iv~~sS~~~~~ 142 (263)
T PRK06181 64 ACERLIEAAVARFGGIDILVNNAGITMWSRFDELTDLSVFERVMRVNYLGAVYCTHAALPHLKASRG-QIVVVSSLAGLT 142 (263)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcccccchhccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCC-EEEEEecccccC
Confidence 988887743 68999999997553321 22 4445667799999999999998853 2334 899999966553
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
+..+...|+.+|.+.+.+++.++.+ .++++++++||.+..+....
T Consensus 143 ------------------------~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~~~~i~pg~v~t~~~~~-------- 190 (263)
T PRK06181 143 ------------------------GVPTRSGYAASKHALHGFFDSLRIELADDGVAVTVVCPGFVATDIRKR-------- 190 (263)
T ss_pred ------------------------CCCCccHHHHHHHHHHHHHHHHHHHhhhcCceEEEEecCccccCcchh--------
Confidence 2233678999999999999888765 48999999999987764210
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN 366 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~ 366 (479)
... ..+.+.. ..+....++++++|++++++.+++.
T Consensus 191 ---------------~~~--~~~~~~~--~~~~~~~~~~~~~dva~~i~~~~~~ 225 (263)
T PRK06181 191 ---------------ALD--GDGKPLG--KSPMQESKIMSAEECAEAILPAIAR 225 (263)
T ss_pred ---------------hcc--ccccccc--cccccccCCCCHHHHHHHHHHHhhC
Confidence 000 0111111 1112234789999999999999985
|
|
| >PRK12747 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-20 Score=174.56 Aligned_cols=229 Identities=12% Similarity=0.062 Sum_probs=154.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|++|||||+|+||.+++++|+++|++|+++++..... ..+....+.. .+..+..+.+|+++.
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~D~~~~ 66 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEE---------------AEETVYEIQS-NGGSAFSIGANLESL 66 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHH---------------HHHHHHHHHh-cCCceEEEecccCCH
Confidence 578999999999999999999999999998875422110 1111111111 134577889999998
Q ss_pred HHHHHHhhhc-----------CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeecc
Q 011707 165 EFLSESFKSF-----------EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTM 231 (479)
Q Consensus 165 ~~~~~~~~~~-----------~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~ 231 (479)
+++..+++.. ++|+||||||..... ....+.+++..++++|+.|+..+++++...- ...+||++||.
T Consensus 67 ~~~~~~~~~~~~~~~~~~g~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~iv~isS~ 146 (252)
T PRK12747 67 HGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSA 146 (252)
T ss_pred HHHHHHHHHHHHHhhhhcCCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHhhcCCeEEEECCc
Confidence 7776555421 599999999975322 2223445678889999999999998876531 12399999997
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +......|+.||++.+.+++.++.++ |++++++.||.|.++......
T Consensus 147 ~~~~------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~girvn~v~Pg~v~t~~~~~~~-- 200 (252)
T PRK12747 147 ATRI------------------------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFIKTDMNAELL-- 200 (252)
T ss_pred cccc------------------------CCCCchhHHHHHHHHHHHHHHHHHHHhHcCCEEEEEecCCccCchhhhcc--
Confidence 5432 12235789999999999999998875 899999999999887421100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. .......... ......+.+++|+++++..++..... .|+ ++.+.++
T Consensus 201 -------------~---~~~~~~~~~~--------~~~~~~~~~~~dva~~~~~l~s~~~~~~~G~--~i~vdgg 249 (252)
T PRK12747 201 -------------S---DPMMKQYATT--------ISAFNRLGEVEDIADTAAFLASPDSRWVTGQ--LIDVSGG 249 (252)
T ss_pred -------------c---CHHHHHHHHh--------cCcccCCCCHHHHHHHHHHHcCccccCcCCc--EEEecCC
Confidence 0 0001111110 01123578999999999998865432 344 7777654
|
|
| >PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=171.99 Aligned_cols=228 Identities=14% Similarity=0.061 Sum_probs=159.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.++++.|+++|++|+++++..... .+....+.. .+.++.++.+|++
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~D~~ 70 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAA----------------NHVVDEIQQ-LGGQAFACRCDIT 70 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEEccCC
Confidence 35689999999999999999999999999999988754321 111111111 1346788899999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
|.+++.++++.. ++|+||||||.........+.+++...+++|+.++.++++++.. .+.+ +||++||...
T Consensus 71 ~~~~i~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~isS~~~ 149 (255)
T PRK06113 71 SEQELSALADFALSKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGG-VILTITSMAA 149 (255)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHhcCCc-EEEEEecccc
Confidence 999988876642 68999999997543333334456677799999999999999863 3334 8999999543
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
.. +..+...|+.+|++.+.+++.++.+ .|++++++.||.+.-+....
T Consensus 150 ~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pg~~~t~~~~~------ 199 (255)
T PRK06113 150 EN------------------------KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS------ 199 (255)
T ss_pred cC------------------------CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeccccccccccc------
Confidence 21 2233578999999999999998876 37999999999886653210
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.....+..+.....+ ...+...+|++.+++.++..... .|+ ++++.++
T Consensus 200 ------------~~~~~~~~~~~~~~~---------~~~~~~~~d~a~~~~~l~~~~~~~~~G~--~i~~~gg 249 (255)
T PRK06113 200 ------------VITPEIEQKMLQHTP---------IRRLGQPQDIANAALFLCSPAASWVSGQ--ILTVSGG 249 (255)
T ss_pred ------------ccCHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHcCccccCccCC--EEEECCC
Confidence 001112222222111 12357889999999999875433 344 8888875
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.7e-20 Score=197.18 Aligned_cols=236 Identities=17% Similarity=0.090 Sum_probs=165.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+.+|+||||||+|+||.++++.|+++|++|++++|..... ......+... .++.++.+|++
T Consensus 419 ~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~----------------~~~~~~l~~~--~~v~~v~~Dvt 480 (681)
T PRK08324 419 PLAGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAA----------------EAAAAELGGP--DRALGVACDVT 480 (681)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHH----------------HHHHHHHhcc--CcEEEEEecCC
Confidence 35689999999999999999999999999999999864321 1111111111 36889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
|.+++.++++.. ++|+||||||...... ...+.+++...+++|+.|+.++++++. +.+.+.+||++||..
T Consensus 481 d~~~v~~~~~~~~~~~g~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vsS~~ 560 (681)
T PRK08324 481 DEAAVQAAFEEAALAFGGVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIASKN 560 (681)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEECCcc
Confidence 999888877643 6999999999754322 223555677889999999999987774 334323899999964
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeee-cCCCCchhhh
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVY-GVRTDETAMH 308 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~-Gp~~~~~~~~ 308 (479)
.+. +......|+.+|++.+.+++.++.++ |+++++++|+.|| +++.....
T Consensus 561 ~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~Pg~v~~~t~~~~~~-- 614 (681)
T PRK08324 561 AVN------------------------PGPNFGAYGAAKAAELHLVRQLALELGPDGIRVNGVNPDAVVRGSGIWTGE-- 614 (681)
T ss_pred ccC------------------------CCCCcHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeCceeecCCccccch--
Confidence 432 12236789999999999999998875 6999999999998 65421100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCe----EEecCCCceeccccHHHHHHHHHHHHhC--CCCCCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPL----TVYGKGGQTRGYLDIRDTVQCVELAIAN--PAQPGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~v~Dva~a~~~~~~~--~~~~g~~~~~ni~~~ 381 (479)
. ........+... ..+.++...+.+++++|+|++++.++.. ....|+ +|++.++
T Consensus 615 ----------------~-~~~~~~~~g~~~~~~~~~~~~~~~l~~~v~~~DvA~a~~~l~s~~~~~~tG~--~i~vdgG 674 (681)
T PRK08324 615 ----------------W-IEARAAAYGLSEEELEEFYRARNLLKREVTPEDVAEAVVFLASGLLSKTTGA--IITVDGG 674 (681)
T ss_pred ----------------h-hhhhhhhccCChHHHHHHHHhcCCcCCccCHHHHHHHHHHHhCccccCCcCC--EEEECCC
Confidence 0 000001111111 1233445567899999999999999853 333454 9999874
|
|
| >PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=170.79 Aligned_cols=226 Identities=17% Similarity=0.175 Sum_probs=159.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++++++|||||+|+||..+++.|+++|+.|+++++..... .+..+.+.. .+.++.++.+|+++
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~~ 65 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKL----------------EEAVAECGA-LGTEVRGYAANVTD 65 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCceEEEEcCCCC
Confidence 4678999999999999999999999999999998754311 111111111 13468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc----------ccccccccchhhhhhHHHHHHHHHHHHH----cCCcce
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY----------SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECH 224 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~----------~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~ 224 (479)
.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++.+.. ...+..
T Consensus 66 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~l~~~~~~~~ 145 (253)
T PRK08217 66 EEDVEATFAQIAEDFGQLNGLINNAGILRDGLLVKAKDGKVTSKMSLEQFQSVIDVNLTGVFLCGREAAAKMIESGSKGV 145 (253)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCccCcCcccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeE
Confidence 98888777643 5899999999643211 1123345567789999999888765532 222237
Q ss_pred EEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCC
Q 011707 225 LVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVR 301 (479)
Q Consensus 225 ~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~ 301 (479)
||++||.+.|+.+ +...|+.+|++.+.+++.++.+ .|++++.++||.+.++.
T Consensus 146 iv~~ss~~~~~~~-------------------------~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~pg~v~t~~ 200 (253)
T PRK08217 146 IINISSIARAGNM-------------------------GQTNYSASKAGVAAMTVTWAKELARYGIRVAAIAPGVIETEM 200 (253)
T ss_pred EEEEccccccCCC-------------------------CCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCcc
Confidence 9999997766532 2578999999999999999876 48999999999998875
Q ss_pred CCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 302 TDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 302 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
... ....+........+ ...+.+++|+++++..++......|+ +|++.++
T Consensus 201 ~~~-------------------~~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~l~~~~~~~g~--~~~~~gg 250 (253)
T PRK08217 201 TAA-------------------MKPEALERLEKMIP---------VGRLGEPEEIAHTVRFIIENDYVTGR--VLEIDGG 250 (253)
T ss_pred ccc-------------------cCHHHHHHHHhcCC---------cCCCcCHHHHHHHHHHHHcCCCcCCc--EEEeCCC
Confidence 321 11222222222221 23467899999999999976544565 9998874
|
|
| >PRK12937 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-19 Score=170.19 Aligned_cols=230 Identities=16% Similarity=0.048 Sum_probs=157.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++++||||||+|+||+++++.|+++|++|+++.+...... .+..+.+.. .+.++.++.+|++|
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~Dl~~ 66 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAA---------------DELVAEIEA-AGGRAIAVQADVAD 66 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHH---------------HHHHHHHHh-cCCeEEEEECCCCC
Confidence 46789999999999999999999999999988765432110 011111111 23578899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccC
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGT 236 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~ 236 (479)
.++++++++.. ++|+||||||...... .....+++..++++|+.++.++++++.+.. ...+||++||...+.
T Consensus 67 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~- 145 (245)
T PRK12937 67 AAAVTRLFDAAETAFGRIDVLVNNAGVMPLGTIADFDLEDFDRTIATNLRGAFVVLREAARHLGQGGRIINLSTSVIAL- 145 (245)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHHhccCcEEEEEeeccccC-
Confidence 99998888753 6999999999754322 222444567789999999999998886542 123899999864432
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
+..+...|+.+|.+.+.+++.++.++ |+++++++||.+-.+.....
T Consensus 146 -----------------------~~~~~~~Y~~sK~a~~~~~~~~a~~~~~~~i~v~~i~pg~~~t~~~~~~-------- 194 (245)
T PRK12937 146 -----------------------PLPGYGPYAASKAAVEGLVHVLANELRGRGITVNAVAPGPVATELFFNG-------- 194 (245)
T ss_pred -----------------------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCccCchhccc--------
Confidence 22346789999999999999988764 79999999998766531100
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
........+....+ ..-+.+++|++++++.++..+...-.+.++++.+
T Consensus 195 ----------~~~~~~~~~~~~~~---------~~~~~~~~d~a~~~~~l~~~~~~~~~g~~~~~~~ 242 (245)
T PRK12937 195 ----------KSAEQIDQLAGLAP---------LERLGTPEEIAAAVAFLAGPDGAWVNGQVLRVNG 242 (245)
T ss_pred ----------CCHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHcCccccCccccEEEeCC
Confidence 00122223322222 1234578999999999887654321123888765
|
|
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-20 Score=176.04 Aligned_cols=168 Identities=18% Similarity=0.145 Sum_probs=132.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++++|+||||+|+||.+++++|+++|++|++++|...... ...+++++.+|++|+
T Consensus 3 ~~~~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~~~-------------------------~~~~~~~~~~D~~d~ 57 (270)
T PRK06179 3 NSKVALVTGASSGIGRATAEKLARAGYRVFGTSRNPARAA-------------------------PIPGVELLELDVTDD 57 (270)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhhcc-------------------------ccCCCeeEEeecCCH
Confidence 3578999999999999999999999999999987543110 013678999999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccccc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEY 234 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~ 234 (479)
++++++++.. .+|+||||||....... ..+.+++..++++|+.|+.++++++ ++.+.+ +||++||...+
T Consensus 58 ~~~~~~~~~~~~~~g~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~-~iv~isS~~~~ 136 (270)
T PRK06179 58 ASVQAAVDEVIARAGRIDVLVNNAGVGLAGAAEESSIAQAQALFDTNVFGILRMTRAVLPHMRAQGSG-RIINISSVLGF 136 (270)
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-eEEEECCcccc
Confidence 9999888753 58999999997654322 2244566788999999999998885 455666 99999996433
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCC
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRT 302 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~ 302 (479)
. +......|+.+|++.+.+++.++.+ .|+++++++||.+.++..
T Consensus 137 ~------------------------~~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~~~t~~~ 183 (270)
T PRK06179 137 L------------------------PAPYMALYAASKHAVEGYSESLDHEVRQFGIRVSLVEPAYTKTNFD 183 (270)
T ss_pred C------------------------CCCCccHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeCCCcccccc
Confidence 2 1123578999999999999988766 489999999999988753
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=171.23 Aligned_cols=231 Identities=16% Similarity=0.097 Sum_probs=156.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|+++++.... ..+.+. ..++.++.+|++
T Consensus 4 ~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~~~-------------------~~~~l~---~~~~~~~~~Dl~ 61 (255)
T PRK06463 4 RFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLYNSAEN-------------------EAKELR---EKGVFTIKCDVG 61 (255)
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcHH-------------------HHHHHH---hCCCeEEEecCC
Confidence 3467999999999999999999999999999987654321 111111 125788999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||..... ....+.+++..++++|+.|+..+.+.+ ++.+.+ +||++||..
T Consensus 62 ~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~g-~iv~isS~~ 140 (255)
T PRK06463 62 NRDQVKKSKEVVEKEFGRVDVLVNNAGIMYLMPFEEFDEEKYNKMIKINLNGAIYTTYEFLPLLKLSKNG-AIVNIASNA 140 (255)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcCHH
Confidence 999998887653 689999999975422 223355567888999999977665554 334444 999999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.++.. ......|+.+|++.+.+++.++.+. |+++++++||.|-.+......
T Consensus 141 ~~~~~-----------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~~i~v~~i~Pg~v~t~~~~~~~--- 194 (255)
T PRK06463 141 GIGTA-----------------------AEGTTFYAITKAGIIILTRRLAFELGKYGIRVNAVAPGWVETDMTLSGK--- 194 (255)
T ss_pred hCCCC-----------------------CCCccHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCCCchhhccc---
Confidence 55321 1225679999999999999998774 899999999988544211000
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~ 382 (479)
. ......+....... .....+...+|++++++.++......-.++++.+.++.
T Consensus 195 --------~---~~~~~~~~~~~~~~---------~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~~~~dgg~ 247 (255)
T PRK06463 195 --------S---QEEAEKLRELFRNK---------TVLKTTGKPEDIANIVLFLASDDARYITGQVIVADGGR 247 (255)
T ss_pred --------C---ccchHHHHHHHHhC---------CCcCCCcCHHHHHHHHHHHcChhhcCCCCCEEEECCCe
Confidence 0 00001111111111 12234578999999999998765432222388887653
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-20 Score=175.36 Aligned_cols=169 Identities=16% Similarity=0.117 Sum_probs=128.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+|+||||||+|+||.+++++|+++|++|++++|.... ++.+. ..++.++.+|++|.
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~~~~--------------------~~~l~---~~~~~~~~~Dl~d~ 59 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATCRKEED--------------------VAALE---AEGLEAFQLDYAEP 59 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH--------------------HHHHH---HCCceEEEccCCCH
Confidence 36799999999999999999999999999999875431 11111 13578899999999
Q ss_pred HHHHHHhhhc------CCCEEEEcccccCcccc-cccccccchhhhhhHHH----HHHHHHHHHHcCCcceEEEeecccc
Q 011707 165 EFLSESFKSF------EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIG----TLNVLFAMKEFRQECHLVKLGTMGE 233 (479)
Q Consensus 165 ~~~~~~~~~~------~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g----~~~ll~~a~~~g~~~~~V~~SS~~v 233 (479)
++++++++.. ++|+||||||....... ..+.+++..++++|+.| +..+++.+++.+.+ +||++||...
T Consensus 60 ~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~l~~~~~~~~g-~iv~isS~~~ 138 (277)
T PRK05993 60 ESIAALVAQVLELSGGRLDALFNNGAYGQPGAVEDLPTEALRAQFEANFFGWHDLTRRVIPVMRKQGQG-RIVQCSSILG 138 (277)
T ss_pred HHHHHHHHHHHHHcCCCccEEEECCCcCCCCCcccCCHHHHHHHHhHHhHHHHHHHHHHHHHHhhcCCC-EEEEECChhh
Confidence 9888877642 58999999997554322 22444567789999999 55566666676666 9999999543
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCC
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVR 301 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~ 301 (479)
+. +..+...|+.||++.|.+++.++.+ +|+++++++||.|-.+.
T Consensus 139 ~~------------------------~~~~~~~Y~asK~a~~~~~~~l~~el~~~gi~v~~v~Pg~v~T~~ 185 (277)
T PRK05993 139 LV------------------------PMKYRGAYNASKFAIEGLSLTLRMELQGSGIHVSLIEPGPIETRF 185 (277)
T ss_pred cC------------------------CCCccchHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCCccCch
Confidence 31 2234678999999999999988754 58999999999986653
|
|
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=171.83 Aligned_cols=240 Identities=12% Similarity=0.058 Sum_probs=159.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+....+.++.++.+|++|
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~Dv~~ 69 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENL----------------KKAREKIKSESNVDVSYIVADLTK 69 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHhhcCCceEEEEecCCC
Confidence 5689999999999999999999999999999998854321 111112222223468899999999
Q ss_pred hHHHHHHhhhc----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccccc
Q 011707 164 FEFLSESFKSF----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEY 234 (479)
Q Consensus 164 ~~~~~~~~~~~----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~ 234 (479)
+++++++++.. ++|++|||||...... ...+++++..++++|+.++..+++++. +.+.+ +||++||...+
T Consensus 70 ~~~i~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~m~~~~~g-~Ii~isS~~~~ 148 (263)
T PRK08339 70 REDLERTVKELKNIGEPDIFFFSTGGPKPGYFMEMSMEDWEGAVKLLLYPAVYLTRALVPAMERKGFG-RIIYSTSVAIK 148 (263)
T ss_pred HHHHHHHHHHHHhhCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEEcCcccc
Confidence 99998887642 5899999999754322 233566788899999999887776653 44445 99999996543
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
. +......|+.+|++.+.+++.++.++ |++++.+.||.|..+..... ..
T Consensus 149 ~------------------------~~~~~~~y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~--~~-- 200 (263)
T PRK08339 149 E------------------------PIPNIALSNVVRISMAGLVRTLAKELGPKGITVNGIMPGIIRTDRVIQL--AQ-- 200 (263)
T ss_pred C------------------------CCCcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccHHHHHH--HH--
Confidence 1 11235679999999999999999875 79999999999865521000 00
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
......+. ........+... .....+...+|++.+++.++......-.++++.+.++
T Consensus 201 -~~~~~~~~---~~~~~~~~~~~~---------~p~~r~~~p~dva~~v~fL~s~~~~~itG~~~~vdgG 257 (263)
T PRK08339 201 -DRAKREGK---SVEEALQEYAKP---------IPLGRLGEPEEIGYLVAFLASDLGSYINGAMIPVDGG 257 (263)
T ss_pred -hhhhccCC---CHHHHHHHHhcc---------CCcccCcCHHHHHHHHHHHhcchhcCccCceEEECCC
Confidence 00000000 001111111111 1122457789999999998875433222237777664
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.4e-20 Score=173.35 Aligned_cols=227 Identities=17% Similarity=0.113 Sum_probs=159.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.++++.|+++|++|+++++..... .+..+.+.. .+.++.++.+|++|
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~Dl~~ 67 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEA----------------RELAAALEA-AGGRAHAIAADLAD 67 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEEccCCC
Confidence 4579999999999999999999999999999987753311 111111111 12468899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
.++++++++.. ++|+||||||...... ...+.+++...+++|+.++.++++++.. .+.+ +||++||...
T Consensus 68 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g-~iv~isS~~~ 146 (250)
T PRK12939 68 PASVQRFFDAAAAALGGLDGLVNNAGITNSKSATELDIDTWDAVMNVNVRGTFLMLRAALPHLRDSGRG-RIVNLASDTA 146 (250)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe-EEEEECchhh
Confidence 99998888642 6999999999754322 2223445667789999999999988754 2333 8999999544
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +......|+.+|++.+.+++.++.+ .++++++++||.+..+....-
T Consensus 147 ~~------------------------~~~~~~~y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~~----- 197 (250)
T PRK12939 147 LW------------------------GAPKLGAYVASKGAVIGMTRSLARELGGRGITVNAIAPGLTATEATAYV----- 197 (250)
T ss_pred cc------------------------CCCCcchHHHHHHHHHHHHHHHHHHHhhhCEEEEEEEECCCCCcccccc-----
Confidence 32 1123568999999999999988876 479999999998876642110
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.. ..+....... .....+++++|++++++.++..+.. .|+ ++++.++
T Consensus 198 -----------~~--~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~~~~G~--~i~~~gg 246 (250)
T PRK12939 198 -----------PA--DERHAYYLKG---------RALERLQVPDDVAGAVLFLLSDAARFVTGQ--LLPVNGG 246 (250)
T ss_pred -----------CC--hHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCccccCccCc--EEEECCC
Confidence 00 0112222211 2234678999999999999986543 444 8887764
|
|
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.9e-20 Score=172.89 Aligned_cols=223 Identities=13% Similarity=0.103 Sum_probs=157.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|.... ...+.++.++.+|++
T Consensus 3 ~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~~~~-------------------------~~~~~~~~~~~~D~~ 57 (252)
T PRK07856 3 DLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCGRRAPE-------------------------TVDGRPAEFHAADVR 57 (252)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCChhh-------------------------hhcCCceEEEEccCC
Confidence 3568999999999999999999999999999999875421 011246888999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----c-CCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----F-RQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~-g~~~~~V~~SS~ 231 (479)
++++++++++.. ++|+||||||...... ...+.+++.+.+++|+.++.++++++.. . +.+ +||++||.
T Consensus 58 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g-~ii~isS~ 136 (252)
T PRK07856 58 DPDQVAALVDAIVERHGRLDVLVNNAGGSPYALAAEASPRFHEKIVELNLLAPLLVAQAANAVMQQQPGGG-SIVNIGSV 136 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCc-EEEEEccc
Confidence 999988887643 5899999999754322 2234456778899999999999998864 1 234 89999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhC--CceEEeecCeeecCCCCchhhhH
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG--IRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--l~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
..+. +......|+.+|++.+.+++.++.+++ +++++++||.|..+......
T Consensus 137 ~~~~------------------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~i~v~~i~Pg~v~t~~~~~~~--- 189 (252)
T PRK07856 137 SGRR------------------------PSPGTAAYGAAKAGLLNLTRSLAVEWAPKVRVNAVVVGLVRTEQSELHY--- 189 (252)
T ss_pred ccCC------------------------CCCCCchhHHHHHHHHHHHHHHHHHhcCCeEEEEEEeccccChHHhhhc---
Confidence 4331 222367899999999999999998753 89999999998766321100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. ......+.... ....+...+|++.+++.++......-.++.+.+.++
T Consensus 190 ------------~~--~~~~~~~~~~~---------~~~~~~~p~~va~~~~~L~~~~~~~i~G~~i~vdgg 238 (252)
T PRK07856 190 ------------GD--AEGIAAVAATV---------PLGRLATPADIAWACLFLASDLASYVSGANLEVHGG 238 (252)
T ss_pred ------------cC--HHHHHHHhhcC---------CCCCCcCHHHHHHHHHHHcCcccCCccCCEEEECCC
Confidence 00 01111111111 122456889999999998875433222238888764
|
|
| >PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-19 Score=170.61 Aligned_cols=229 Identities=10% Similarity=-0.012 Sum_probs=157.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|+++++.... +..+.... .+.++.++.+|++|
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~~~------------------~~~~~~~~-~~~~~~~~~~Dl~~ 66 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAEAP------------------ETQAQVEA-LGRKFHFITADLIQ 66 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCchHH------------------HHHHHHHH-cCCeEEEEEeCCCC
Confidence 568999999999999999999999999999988764211 01111111 23568899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
.++++++++.. ++|++|||||...... ...+++++..++++|+.++..+.+++.. .+.+.+||++||...
T Consensus 67 ~~~~~~~~~~~~~~~g~iD~lv~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~ 146 (251)
T PRK12481 67 QKDIDSIVSQAVEVMGHIDILINNAGIIRRQDLLEFGNKDWDDVININQKTVFFLSQAVAKQFVKQGNGGKIINIASMLS 146 (251)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHheeCcHHHHHHHHHHHHHHHHcCCCCEEEEeCChhh
Confidence 99998888643 6999999999754322 2235567888999999999999887753 232238999999654
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+.. ......|+.||++.+.+++.++.+ +|++++.++||.|-.+.....
T Consensus 147 ~~~------------------------~~~~~~Y~asK~a~~~l~~~la~e~~~~girvn~v~PG~v~t~~~~~~----- 197 (251)
T PRK12481 147 FQG------------------------GIRVPSYTASKSAVMGLTRALATELSQYNINVNAIAPGYMATDNTAAL----- 197 (251)
T ss_pred cCC------------------------CCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCCccCchhhc-----
Confidence 421 122467999999999999999886 489999999999865531100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. .......+....+ ...+...+|++++++.++......-.++++.+.++
T Consensus 198 -----------~~-~~~~~~~~~~~~p---------~~~~~~peeva~~~~~L~s~~~~~~~G~~i~vdgg 247 (251)
T PRK12481 198 -----------RA-DTARNEAILERIP---------ASRWGTPDDLAGPAIFLSSSASDYVTGYTLAVDGG 247 (251)
T ss_pred -----------cc-ChHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCccccCcCCceEEECCC
Confidence 00 0011111111111 12357889999999999875433222236666554
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.8e-20 Score=173.57 Aligned_cols=228 Identities=21% Similarity=0.210 Sum_probs=163.4
Q ss_pred EEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHHH
Q 011707 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLS 168 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~~ 168 (479)
|+|+||||.+|+.+++.|++.|++|+++.|..+.. ....+. ..+++++.+|+.|.+++.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~------------------~~~~l~---~~g~~vv~~d~~~~~~l~ 59 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSD------------------RAQQLQ---ALGAEVVEADYDDPESLV 59 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHH------------------HHHHHH---HTTTEEEES-TT-HHHHH
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchh------------------hhhhhh---cccceEeecccCCHHHHH
Confidence 79999999999999999999999999999865321 111221 247788999999999999
Q ss_pred HHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCceee
Q 011707 169 ESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITI 248 (479)
Q Consensus 169 ~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~~~~ 248 (479)
++|+ ++|+||.+-+... ...+....+++++|++.|++ +||+.|....+....
T Consensus 60 ~al~--g~d~v~~~~~~~~---------------~~~~~~~~~li~Aa~~agVk-~~v~ss~~~~~~~~~---------- 111 (233)
T PF05368_consen 60 AALK--GVDAVFSVTPPSH---------------PSELEQQKNLIDAAKAAGVK-HFVPSSFGADYDESS---------- 111 (233)
T ss_dssp HHHT--TCSEEEEESSCSC---------------CCHHHHHHHHHHHHHHHT-S-EEEESEESSGTTTTT----------
T ss_pred HHHc--CCceEEeecCcch---------------hhhhhhhhhHHHhhhccccc-eEEEEEecccccccc----------
Confidence 9999 9999998876422 12456678999999999988 999766544332110
Q ss_pred cCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHHHH
Q 011707 249 NHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRF 328 (479)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 328 (479)
...|...+...|...|+.++ +.+++++++|||..+... +..+
T Consensus 112 -----------~~~p~~~~~~~k~~ie~~l~----~~~i~~t~i~~g~f~e~~-----------------------~~~~ 153 (233)
T PF05368_consen 112 -----------GSEPEIPHFDQKAEIEEYLR----ESGIPYTIIRPGFFMENL-----------------------LPPF 153 (233)
T ss_dssp -----------TSTTHHHHHHHHHHHHHHHH----HCTSEBEEEEE-EEHHHH-----------------------HTTT
T ss_pred -----------cccccchhhhhhhhhhhhhh----hccccceeccccchhhhh-----------------------hhhh
Confidence 11223444567887877654 459999999999865432 1111
Q ss_pred HH--HHhcCC-CeEEecCCCceeccc-cHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhhhcCCcce
Q 011707 329 CV--QAAVGH-PLTVYGKGGQTRGYL-DIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVK 404 (479)
Q Consensus 329 ~~--~~~~~~-~~~~~~~~~~~~~~v-~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~~~g~~~~ 404 (479)
.. .....+ .+.++++++....++ +.+|+++++..++.++...++.+.+.++++.+|+.|+++.+.+. +|.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va~il~~p~~~~~~~~~~~~~~~~t~~eia~~~s~~---~G~~v~ 230 (233)
T PF05368_consen 154 APVVDIKKSKDVVTLPGPGNQKAVPVTDTRDVGRAVAAILLDPEKHNNGKTIFLAGETLTYNEIAAILSKV---LGKKVK 230 (233)
T ss_dssp HHTTCSCCTSSEEEEETTSTSEEEEEEHHHHHHHHHHHHHHSGGGTTEEEEEEEGGGEEEHHHHHHHHHHH---HTSEEE
T ss_pred cccccccccceEEEEccCCCccccccccHHHHHHHHHHHHcChHHhcCCEEEEeCCCCCCHHHHHHHHHHH---HCCccE
Confidence 11 111121 466777777666775 99999999999999977764456888888889999999999999 998876
Q ss_pred ee
Q 011707 405 TI 406 (479)
Q Consensus 405 ~~ 406 (479)
+.
T Consensus 231 y~ 232 (233)
T PF05368_consen 231 YV 232 (233)
T ss_dssp EE
T ss_pred Ee
Confidence 54
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK07577 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-19 Score=167.47 Aligned_cols=218 Identities=17% Similarity=0.085 Sum_probs=153.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+|+||||||+|+||.+++++|+++|++|++++|..... ....++.+|++|.
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~~----------------------------~~~~~~~~D~~~~ 53 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIARSAIDD----------------------------FPGELFACDLADI 53 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCcccc----------------------------cCceEEEeeCCCH
Confidence 468999999999999999999999999999998754310 1124678999999
Q ss_pred HHHHHHhhh----cCCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccccc
Q 011707 165 EFLSESFKS----FEPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 165 ~~~~~~~~~----~~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~g 235 (479)
++++++++. .++|+||||||....... ..+.+++...+++|+.++.++.+++. +.+.+ +||++||...|+
T Consensus 54 ~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~ 132 (234)
T PRK07577 54 EQTAATLAQINEIHPVDAIVNNVGIALPQPLGKIDLAALQDVYDLNVRAAVQVTQAFLEGMKLREQG-RIVNICSRAIFG 132 (234)
T ss_pred HHHHHHHHHHHHhCCCcEEEECCCCCCCCChHHCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEccccccC
Confidence 888776653 268999999997554322 22455667789999999888876663 45555 999999987664
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
.+ ....|+.+|.+.+.+++.++.++ |++++++|||.+..+......
T Consensus 133 ~~-------------------------~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~i~pg~~~t~~~~~~~------ 181 (234)
T PRK07577 133 AL-------------------------DRTSYSAAKSALVGCTRTWALELAEYGITVNAVAPGPIETELFRQTR------ 181 (234)
T ss_pred CC-------------------------CchHHHHHHHHHHHHHHHHHHHHHhhCcEEEEEecCcccCccccccc------
Confidence 33 25789999999999999887764 899999999998876421000
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
..............+ ...+...+|++.+++.++..+...-.+.++++.++
T Consensus 182 ----------~~~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g~ 231 (234)
T PRK07577 182 ----------PVGSEEEKRVLASIP---------MRRLGTPEEVAAAIAFLLSDDAGFITGQVLGVDGG 231 (234)
T ss_pred ----------ccchhHHHHHhhcCC---------CCCCcCHHHHHHHHHHHhCcccCCccceEEEecCC
Confidence 000011111111111 11245789999999999976543212237877653
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.4e-19 Score=168.65 Aligned_cols=231 Identities=13% Similarity=0.087 Sum_probs=158.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|+++++..... +.+..+.+.. .+.++.++.+|++|
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~---------------~~~~~~~l~~-~~~~~~~~~~D~~~ 69 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDG---------------LAETAEHIEA-AGRRAIQIAADVTS 69 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchH---------------HHHHHHHHHh-cCCceEEEEcCCCC
Confidence 5689999999999999999999999999999998754211 0111112211 13467889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+.+++..++++|+.++..+++++. +.+.+ +||++||..-
T Consensus 70 ~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~isS~~~ 148 (254)
T PRK06114 70 KADLRAAVARTEAELGALTLAVNAAGIANANPAEEMEEEQWQTVMDINLTGVFLSCQAEARAMLENGGG-SIVNIASMSG 148 (254)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCc-EEEEECchhh
Confidence 99888877643 5899999999765322 233556678889999999988877764 33444 8999998542
Q ss_pred -ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 234 -YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 234 -~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
++.+ ..+...|+.+|++.+.+++.++.++ |+++++++||.+..+.....
T Consensus 149 ~~~~~-----------------------~~~~~~Y~~sKaa~~~l~~~la~e~~~~gi~v~~v~PG~i~t~~~~~~---- 201 (254)
T PRK06114 149 IIVNR-----------------------GLLQAHYNASKAGVIHLSKSLAMEWVGRGIRVNSISPGYTATPMNTRP---- 201 (254)
T ss_pred cCCCC-----------------------CCCcchHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeecCccCcccccc----
Confidence 2221 1124689999999999999998864 79999999999988753210
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
. ............+ ...+..++|++.+++.++......-.++++.+.++
T Consensus 202 -------------~-~~~~~~~~~~~~p---------~~r~~~~~dva~~~~~l~s~~~~~~tG~~i~~dgg 250 (254)
T PRK06114 202 -------------E-MVHQTKLFEEQTP---------MQRMAKVDEMVGPAVFLLSDAASFCTGVDLLVDGG 250 (254)
T ss_pred -------------c-chHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHcCccccCcCCceEEECcC
Confidence 0 0111111111111 12356789999999998875433222237777664
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-19 Score=171.65 Aligned_cols=231 Identities=11% Similarity=0.046 Sum_probs=158.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+.+|++|||||+|+||.+++++|+++|++|++++|..... .+....+.. .+.++..+.+|++
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~Dl~ 68 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERA----------------ELAVAKLRQ-EGIKAHAAPFNVT 68 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHH----------------HHHHHHHHh-cCCeEEEEecCCC
Confidence 35689999999999999999999999999999988754311 111111111 1246778899999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|.++++++++.. ++|+||||||..... ....+.+++..++++|+.++.++++++.. .+.+ +||++||..
T Consensus 69 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~isS~~ 147 (254)
T PRK08085 69 HKQEVEAAIEHIEKDIGPIDVLINNAGIQRRHPFTEFPEQEWNDVIAVNQTAVFLVSQAVARYMVKRQAG-KIINICSMQ 147 (254)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEccch
Confidence 999988877642 589999999975432 22234556788899999999999887754 3344 899999853
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
... +......|+.+|++.+.+++.++.++ |+++++++||.+..+......
T Consensus 148 ~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~pG~~~t~~~~~~~--- 200 (254)
T PRK08085 148 SEL------------------------GRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALV--- 200 (254)
T ss_pred hcc------------------------CCCCCcchHHHHHHHHHHHHHHHHHHHhhCeEEEEEEeCCCCCcchhhhc---
Confidence 211 12235789999999999999998874 899999999999887432100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
. ...+...+... .....+...+|++.+++.++......-.+++..+.++
T Consensus 201 ------------~--~~~~~~~~~~~---------~p~~~~~~~~~va~~~~~l~~~~~~~i~G~~i~~dgg 249 (254)
T PRK08085 201 ------------E--DEAFTAWLCKR---------TPAARWGDPQELIGAAVFLSSKASDFVNGHLLFVDGG 249 (254)
T ss_pred ------------c--CHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCccccCCcCCEEEECCC
Confidence 0 01111111111 1223467899999999998875443212236666553
|
|
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=170.98 Aligned_cols=172 Identities=18% Similarity=0.217 Sum_probs=128.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+||||||+|+||.+++++|+++|++|++++|..... .+..+.... . .++.++.+|++|++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~----------------~~~~~~~~~-~-~~~~~~~~Dl~~~~ 63 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGATLGLVARRTDAL----------------QAFAARLPK-A-ARVSVYAADVRDAD 63 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHhccc-C-CeeEEEEcCCCCHH
Confidence 47999999999999999999999999999998864311 111111111 1 16889999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCccccc--ccccccchhhhhhHHHHHHHHHH----HHHcCCcceEEEeeccc-c
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPYSM--IDRSRAVFTQHNNVIGTLNVLFA----MKEFRQECHLVKLGTMG-E 233 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~~~--~~~~~~~~~~~~Nv~g~~~ll~~----a~~~g~~~~~V~~SS~~-v 233 (479)
++.++++.. .+|+||||||........ .+.+++...+++|+.|+.+++++ +++.+.+ +||++||.. +
T Consensus 64 ~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~l~~~~~~~~~-~iv~isS~~~~ 142 (257)
T PRK07024 64 ALAAAAADFIAAHGLPDVVIANAGISVGTLTEEREDLAVFREVMDTNYFGMVATFQPFIAPMRAARRG-TLVGIASVAGV 142 (257)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCcCCCccccccCCHHHHHHHHhHhcHHHHHHHHHHHHHHHhcCCC-EEEEEechhhc
Confidence 998877642 489999999975422211 34456778899999999998774 4455555 899999853 3
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCC
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVR 301 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~ 301 (479)
++. .....|+.+|++.+.+++.++.+ +|+++++++||.|.++.
T Consensus 143 ~~~-------------------------~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~ 188 (257)
T PRK07024 143 RGL-------------------------PGAGAYSASKAAAIKYLESLRVELRPAGVRVVTIAPGYIRTPM 188 (257)
T ss_pred CCC-------------------------CCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCcCch
Confidence 322 22567999999999999888755 48999999999998773
|
|
| >PRK09730 putative NAD(P)-binding oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-19 Score=169.88 Aligned_cols=228 Identities=16% Similarity=0.106 Sum_probs=151.1
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
++++|||||+|+||.+++++|+++|++|+++....... ..+....... .+.++.++.+|++|++
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~D~~d~~ 64 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHA---------------AQEVVNLITQ-AGGKAFVLQADISDEN 64 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHH---------------HHHHHHHHHh-CCCeEEEEEccCCCHH
Confidence 36899999999999999999999999998754322110 1111111111 1346788999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCccc--ccccccccchhhhhhHHHHHHHHHHHHHc------CCcceEEEeeccc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPY--SMIDRSRAVFTQHNNVIGTLNVLFAMKEF------RQECHLVKLGTMG 232 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~--~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~------g~~~~~V~~SS~~ 232 (479)
+++++++.. .+|+|||+||...... ...+.+++...+++|+.++.++++++... +...+||++||..
T Consensus 65 ~i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~v~~sS~~ 144 (247)
T PRK09730 65 QVVAMFTAIDQHDEPLAALVNNAGILFTQCTVENLTAERINRVLSTNVTGYFLCCREAVKRMALKHGGSGGAIVNVSSAA 144 (247)
T ss_pred HHHHHHHHHHHhCCCCCEEEECCCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCCcEEEEECchh
Confidence 998887743 5899999999643222 12233355678999999999888776442 1123799999964
Q ss_pred c-ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 233 E-YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 233 v-~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
. ++.+ .....|+.+|+..+.+++.++.++ |++++++|||.+|+|.....
T Consensus 145 ~~~~~~------------------------~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~i~pg~~~~~~~~~~--- 197 (247)
T PRK09730 145 SRLGAP------------------------GEYVDYAASKGAIDTLTTGLSLEVAAQGIRVNCVRPGFIYTEMHASG--- 197 (247)
T ss_pred hccCCC------------------------CcccchHhHHHHHHHHHHHHHHHHHHhCeEEEEEEeCCCcCcccccC---
Confidence 3 3321 112469999999999999887664 89999999999999963210
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
. ............++ ....+++|++++++.++........+.+|++.+
T Consensus 198 --------------~-~~~~~~~~~~~~~~---------~~~~~~~dva~~~~~~~~~~~~~~~g~~~~~~g 245 (247)
T PRK09730 198 --------------G-EPGRVDRVKSNIPM---------QRGGQPEEVAQAIVWLLSDKASYVTGSFIDLAG 245 (247)
T ss_pred --------------C-CHHHHHHHHhcCCC---------CCCcCHHHHHHHHHhhcChhhcCccCcEEecCC
Confidence 0 01122222222221 112478999999999887543322223777765
|
|
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-19 Score=171.34 Aligned_cols=170 Identities=18% Similarity=0.182 Sum_probs=128.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|+||||+|+||.++++.|+++|++|++++|.... +.......+.++.++.+|++|.++
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~--------------------~~~~~~~~~~~~~~~~~Dl~~~~~ 60 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQER--------------------LQELKDELGDNLYIAQLDVRNRAA 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHH--------------------HHHHHHHhccceEEEEecCCCHHH
Confidence 589999999999999999999999999999885431 111111112468889999999998
Q ss_pred HHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccccc
Q 011707 167 LSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 167 ~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~g 235 (479)
++++++.. ++|+|||+||.... +....+.+++..++++|+.|+.++++.+. +.+.+ +||++||...+.
T Consensus 61 i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~isS~~~~~ 139 (248)
T PRK10538 61 IEEMLASLPAEWRNIDVLVNNAGLALGLEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHG-HIINIGSTAGSW 139 (248)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEECCcccCC
Confidence 88877642 69999999996431 22233455677889999999777776653 44555 899999964321
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCC
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVR 301 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~ 301 (479)
+..+...|+.+|.+.+.+++.++.+. ++++++++||.+.|+.
T Consensus 140 ------------------------~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~i~~~~ 184 (248)
T PRK10538 140 ------------------------PYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTE 184 (248)
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCeecccc
Confidence 22335789999999999999998874 7999999999998764
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.2e-19 Score=168.68 Aligned_cols=230 Identities=14% Similarity=0.038 Sum_probs=157.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|..... .+....+.. .+.++..+.+|++|
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~D~~~ 69 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDAL----------------EKLADEIGT-SGGKVVPVCCDVSQ 69 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHH----------------HHHHHHHHh-cCCeEEEEEccCCC
Confidence 5689999999999999999999999999999988753311 111111111 13467889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+.+++..++++|+.++..+++++.. .+.+.+||++||...
T Consensus 70 ~~~~~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~sS~~~ 149 (253)
T PRK05867 70 HQQVTSMLDQVTAELGGIDIAVCNAGIITVTPMLDMPLEEFQRLQNTNVTGVFLTAQAAAKAMVKQGQGGVIINTASMSG 149 (253)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCcEEEEECcHHh
Confidence 99988877643 7999999999764332 2234456778899999999999988753 222237999988532
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
.-.. .......|+.+|++.+.+++.++.++ |+++++++||.|-.+....
T Consensus 150 ~~~~----------------------~~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~i~PG~v~t~~~~~------ 201 (253)
T PRK05867 150 HIIN----------------------VPQQVSHYCASKAAVIHLTKAMAVELAPHKIRVNSVSPGYILTELVEP------ 201 (253)
T ss_pred cCCC----------------------CCCCccchHHHHHHHHHHHHHHHHHHhHhCeEEEEeecCCCCCccccc------
Confidence 1000 01124689999999999999998874 8999999999997664211
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
............+ ...+...+|++++++.++......-.++++.+.++
T Consensus 202 --------------~~~~~~~~~~~~~---------~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgG 249 (253)
T PRK05867 202 --------------YTEYQPLWEPKIP---------LGRLGRPEELAGLYLYLASEASSYMTGSDIVIDGG 249 (253)
T ss_pred --------------chHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHcCcccCCcCCCeEEECCC
Confidence 0111111111111 12457899999999999875443222237777664
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.8e-19 Score=171.92 Aligned_cols=235 Identities=11% Similarity=-0.008 Sum_probs=158.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~ 162 (479)
+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+... .+.++.++.+|++
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~~Dl~ 68 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALA----------------ERAAAAIARDVAGARVLAVPADVT 68 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHhccCCceEEEEEccCC
Confidence 4689999999999999999999999999999998854321 1111222111 2346888999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|++++.++++.. ++|+||||||...... ...+.+++..++++|+.++.++++++.. .+.+ +||++||..
T Consensus 69 ~~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~ 147 (260)
T PRK07063 69 DAASVAAAVAAAEEAFGPLDVLVNNAGINVFADPLAMTDEDWRRCFAVDLDGAWNGCRAVLPGMVERGRG-SIVNIASTH 147 (260)
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEECCCcCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhhCCe-EEEEECChh
Confidence 999888887642 6999999999754322 2234456788899999999999988753 3444 899999964
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.+|++.+.+++.++.++ |++++.++||.|-.+.....
T Consensus 148 ~~~------------------------~~~~~~~Y~~sKaa~~~~~~~la~el~~~gIrvn~v~PG~v~t~~~~~~---- 199 (260)
T PRK07063 148 AFK------------------------IIPGCFPYPVAKHGLLGLTRALGIEYAARNVRVNAIAPGYIETQLTEDW---- 199 (260)
T ss_pred hcc------------------------CCCCchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccChhhhhh----
Confidence 332 11235689999999999999998875 79999999998865532100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.+ .. .. ............ ...-+...+|++.+++.++......-.++++.+.++
T Consensus 200 --~~-----~~-~~-~~~~~~~~~~~~---------~~~r~~~~~~va~~~~fl~s~~~~~itG~~i~vdgg 253 (260)
T PRK07063 200 --WN-----AQ-PD-PAAARAETLALQ---------PMKRIGRPEEVAMTAVFLASDEAPFINATCITIDGG 253 (260)
T ss_pred --hh-----cc-CC-hHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcCccccccCCcEEEECCC
Confidence 00 00 00 000111111111 112356789999999999876443222237776654
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.8e-19 Score=168.00 Aligned_cols=174 Identities=17% Similarity=0.162 Sum_probs=129.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|++|||||+|+||.++++.|+++|++|++++|..... ......+.. .+.++.++.+|++|++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~Dl~~~~ 64 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETA----------------QAAADKLSK-DGGKAIAVKADVSDRD 64 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCeEEEEECCCCCHH
Confidence 67999999999999999999999999999998754311 011111111 1346788999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeeccc-cc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMG-EY 234 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~-v~ 234 (479)
++.++++.. ++|+||||||...... ...+.+++..++++|+.++..+++++.+. +.+.+||++||.. .+
T Consensus 65 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~ 144 (256)
T PRK08643 65 QVFAAVRQVVDTFGDLNVVVNNAGVAPTTPIETITEEQFDKVYNINVGGVIWGIQAAQEAFKKLGHGGKIINATSQAGVV 144 (256)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECcccccc
Confidence 888877643 5899999999754322 22244566778999999998888777542 2223899999854 33
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCC
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVR 301 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~ 301 (479)
+. .....|+.+|++.+.+++.++.+ .|+++++++||.+..|.
T Consensus 145 ~~-------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~i~Pg~v~t~~ 189 (256)
T PRK08643 145 GN-------------------------PELAVYSSTKFAVRGLTQTAARDLASEGITVNAYAPGIVKTPM 189 (256)
T ss_pred CC-------------------------CCCchhHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcChh
Confidence 22 22578999999999999998876 47999999999998764
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-19 Score=167.32 Aligned_cols=207 Identities=14% Similarity=0.147 Sum_probs=150.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++++++|||||+|+||.+++++|+++|++|++++|..... .+....+. ..+.++.++.+|+++
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~----------------~~~~~~~~-~~~~~~~~~~~D~~~ 67 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGVNVGLLARTEENL----------------KAVAEEVE-AYGVKVVIATADVSD 67 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHH-HhCCeEEEEECCCCC
Confidence 3578999999999999999999999999999998864321 11111121 123478899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
++++.++++.. ++|+|||+||....... ..+++++.+.+++|+.++.++++++.. .+.+ ++|++||...
T Consensus 68 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~ss~~~ 146 (239)
T PRK07666 68 YEEVTAAIEQLKNELGSIDILINNAGISKFGKFLELDPAEWEKIIQVNLMGVYYATRAVLPSMIERQSG-DIINISSTAG 146 (239)
T ss_pred HHHHHHHHHHHHHHcCCccEEEEcCccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCc-EEEEEcchhh
Confidence 99998888743 69999999997543221 224455677899999999999988763 3444 8999998543
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +..+...|+.+|.+.+.+++.++.+ .|++++++|||.+..+....
T Consensus 147 ~~------------------------~~~~~~~Y~~sK~a~~~~~~~~a~e~~~~gi~v~~v~pg~v~t~~~~~------ 196 (239)
T PRK07666 147 QK------------------------GAAVTSAYSASKFGVLGLTESLMQEVRKHNIRVTALTPSTVATDMAVD------ 196 (239)
T ss_pred cc------------------------CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCcchhh------
Confidence 32 1123567999999999999888765 48999999999998774210
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP 367 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~ 367 (479)
. ... . .....++..+|++++++.+++++
T Consensus 197 -----------------~---~~~--------~-~~~~~~~~~~~~a~~~~~~l~~~ 224 (239)
T PRK07666 197 -----------------L---GLT--------D-GNPDKVMQPEDLAEFIVAQLKLN 224 (239)
T ss_pred -----------------c---ccc--------c-cCCCCCCCHHHHHHHHHHHHhCC
Confidence 0 000 0 01124578999999999999875
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-19 Score=171.64 Aligned_cols=228 Identities=11% Similarity=0.068 Sum_probs=158.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|+++++.... .+..+... ..+.++.++.+|++
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~-----------------~~~~~~~~-~~~~~~~~~~~D~~ 73 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNW-----------------DETRRLIE-KEGRKVTFVQVDLT 73 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHH-----------------HHHHHHHH-hcCCceEEEEcCCC
Confidence 3568999999999999999999999999999998875210 01111111 12346889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
+.+++++++++. .+|++|||||...... ...+.+++...+++|+.++.++++++.. .+.+ +||++||..
T Consensus 74 ~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~ 152 (258)
T PRK06935 74 KPESAEKVVKEALEEFGKIDILVNNAGTIRRAPLLEYKDEDWNAVMDINLNSVYHLSQAVAKVMAKQGSG-KIINIASML 152 (258)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhCHHHHHHHHHHHHHHHhcCCe-EEEEECCHH
Confidence 999888887643 6899999999754322 2224456778899999999888877643 3445 899999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+.. ......|+.+|++.+.+++.+++++ |+++++++||.|..+....-.
T Consensus 153 ~~~~------------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~--- 205 (258)
T PRK06935 153 SFQG------------------------GKFVPAYTASKHGVAGLTKAFANELAAYNIQVNAIAPGYIKTANTAPIR--- 205 (258)
T ss_pred hccC------------------------CCCchhhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeccccccchhhcc---
Confidence 5421 1225689999999999999999875 799999999998776421100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. -.......... .....+...+|++.+++.++..... .|+ ++.+.++
T Consensus 206 ------------~--~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~s~~~~~~~G~--~i~~dgg 254 (258)
T PRK06935 206 ------------A--DKNRNDEILKR---------IPAGRWGEPDDLMGAAVFLASRASDYVNGH--ILAVDGG 254 (258)
T ss_pred ------------c--ChHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcChhhcCCCCC--EEEECCC
Confidence 0 00011111111 1123467889999999998875433 344 7777654
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.1e-19 Score=167.19 Aligned_cols=229 Identities=14% Similarity=0.045 Sum_probs=157.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++|
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~~ 66 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAEL----------------DQLVAEIRA-EGGEAVALAGDVRD 66 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEEcCCCC
Confidence 4678999999999999999999999999999998764321 111112211 13468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMG 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~ 232 (479)
+++++++++.. ++|+||||||.... +....+++++..++++|+.++..+.+++ ++.+.+ +||++||..
T Consensus 67 ~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~l~~~~~~-~iv~~sS~~ 145 (254)
T PRK07478 67 EAYAKALVALAVERFGGLDIAFNNAGTLGEMGPVAEMSLEGWRETLATNLTSAFLGAKHQIPAMLARGGG-SLIFTSTFV 145 (254)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-eEEEEechH
Confidence 99888877643 69999999997532 2223355667888999999888876654 444445 899999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+.. +......|+.||++.+.+++.++.++ |+++++++||.|-.+.....
T Consensus 146 ~~~~-----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---- 198 (254)
T PRK07478 146 GHTA-----------------------GFPGMAAYAASKAGLIGLTQVLAAEYGAQGIRVNALLPGGTDTPMGRAM---- 198 (254)
T ss_pred hhcc-----------------------CCCCcchhHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCcccCcccccc----
Confidence 4321 11235789999999999999998875 69999999999866532100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.. .......+.... ....+...+|++++++.++..... .|+ ++.+.++
T Consensus 199 ------------~~-~~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~s~~~~~~~G~--~~~~dgg 248 (254)
T PRK07478 199 ------------GD-TPEALAFVAGLH---------ALKRMAQPEEIAQAALFLASDAASFVTGT--ALLVDGG 248 (254)
T ss_pred ------------cC-CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCchhcCCCCC--eEEeCCc
Confidence 00 001111111111 112456899999999998875433 344 7766553
|
|
| >PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.7e-19 Score=165.79 Aligned_cols=219 Identities=14% Similarity=0.063 Sum_probs=153.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|..... ...++.++.+|+++
T Consensus 3 l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~--------------------------~~~~~~~~~~D~~~ 56 (235)
T PRK06550 3 FMTKTVLITGAASGIGLAQARAFLAQGAQVYGVDKQDKPD--------------------------LSGNFHFLQLDLSD 56 (235)
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEeCCcccc--------------------------cCCcEEEEECChHH
Confidence 5678999999999999999999999999999998753210 01367889999998
Q ss_pred hHHHHHHhhhc-CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccccccC
Q 011707 164 FEFLSESFKSF-EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 164 ~~~~~~~~~~~-~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v~g~ 236 (479)
+ ++++++.. ++|+||||||.... .....+.+++.+++++|+.|+.++++++.. .+.+ +||++||...+.
T Consensus 57 ~--~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~- 132 (235)
T PRK06550 57 D--LEPLFDWVPSVDILCNTAGILDDYKPLLDTSLEEWQHIFDTNLTSTFLLTRAYLPQMLERKSG-IIINMCSIASFV- 132 (235)
T ss_pred H--HHHHHHhhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcChhhcc-
Confidence 7 55555433 69999999996421 222334556788899999999999998854 3334 899999964331
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
+......|+.+|++.+.+++.++.++ |+++++++||.+.++......
T Consensus 133 -----------------------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~pg~v~t~~~~~~~------- 182 (235)
T PRK06550 133 -----------------------AGGGGAAYTASKHALAGFTKQLALDYAKDGIQVFGIAPGAVKTPMTAADF------- 182 (235)
T ss_pred -----------------------CCCCCcccHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCccCccccccc-------
Confidence 11225689999999999999988875 899999999999887532110
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
. -..+...+.... ....+...+|+|++++.++......-.+.++.+.++
T Consensus 183 --------~--~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~l~s~~~~~~~g~~~~~~gg 231 (235)
T PRK06550 183 --------E--PGGLADWVARET---------PIKRWAEPEEVAELTLFLASGKADYMQGTIVPIDGG 231 (235)
T ss_pred --------C--chHHHHHHhccC---------CcCCCCCHHHHHHHHHHHcChhhccCCCcEEEECCc
Confidence 0 011111122211 223467889999999999865433222237777654
|
|
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-19 Score=170.57 Aligned_cols=202 Identities=17% Similarity=0.051 Sum_probs=146.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++++||||||+|+||.+++++|+++|++|++++|..... .+..+.. .++.++.+|++|
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~~~~~----------------~~~~~~~-----~~~~~~~~D~~~ 61 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGARVAIGDLDEALA----------------KETAAEL-----GLVVGGPLDVTD 61 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHh-----ccceEEEccCCC
Confidence 4578999999999999999999999999999988754311 0001111 157789999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|++|||||....... ..+.+++.+++++|+.|+.++++.+. +.+.+ +||++||...
T Consensus 62 ~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~ 140 (273)
T PRK07825 62 PASFAAFLDAVEADLGPIDVLVNNAGVMPVGPFLDEPDAVTRRILDVNVYGVILGSKLAAPRMVPRGRG-HVVNVASLAG 140 (273)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-EEEEEcCccc
Confidence 99887776643 68999999997653322 22444567789999999998877664 44555 8999999643
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +......|+.+|++.+.+.+.++.+ .|+++++++||.+-.+...
T Consensus 141 ~~------------------------~~~~~~~Y~asKaa~~~~~~~l~~el~~~gi~v~~v~Pg~v~t~~~~------- 189 (273)
T PRK07825 141 KI------------------------PVPGMATYCASKHAVVGFTDAARLELRGTGVHVSVVLPSFVNTELIA------- 189 (273)
T ss_pred cC------------------------CCCCCcchHHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcCcchhhc-------
Confidence 32 1233678999999999888887766 3899999999987544210
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA 368 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~ 368 (479)
+.. ......++.++|+|++++.++.++.
T Consensus 190 ------------------------~~~------~~~~~~~~~~~~va~~~~~~l~~~~ 217 (273)
T PRK07825 190 ------------------------GTG------GAKGFKNVEPEDVAAAIVGTVAKPR 217 (273)
T ss_pred ------------------------ccc------cccCCCCCCHHHHHHHHHHHHhCCC
Confidence 000 0112246899999999999998754
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.8e-19 Score=166.42 Aligned_cols=229 Identities=12% Similarity=0.101 Sum_probs=160.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+|+||||+|+||++++++|+++|++|++++|.... +.+..+.+.. .+.++.++.+|++
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~----------------~~~~~~~~~~-~~~~~~~~~~Dl~ 70 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAAT----------------LEAAVAALRA-AGGAAEALAFDIA 70 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHH----------------HHHHHHHHHh-cCCceEEEEccCC
Confidence 3578999999999999999999999999999999886431 1111111211 2346889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|++++.++++.. ++|+||||||..... ....+.+++...+++|+.++.++++++.+ .+.+ +||++||..
T Consensus 71 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~ss~~ 149 (256)
T PRK06124 71 DEEAVAAAFARIDAEHGRLDILVNNVGARDRRPLAELDDAAIRALLETDLVAPILLSRLAAQRMKRQGYG-RIIAITSIA 149 (256)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEeech
Confidence 999888877643 579999999975432 22234456778899999999999977754 4555 899999954
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.+|.+.+.+++.++.+. |+++++++||.+.++......
T Consensus 150 ~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~pg~v~t~~~~~~~--- 202 (256)
T PRK06124 150 GQV------------------------ARAGDAVYPAAKQGLTGLMRALAAEFGPHGITSNAIAPGYFATETNAAMA--- 202 (256)
T ss_pred hcc------------------------CCCCccHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEECCccCcchhhhc---
Confidence 321 11235789999999999999888764 799999999999988532100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCC--CCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP--GEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~--g~~~~~ni~~~ 381 (479)
. -..+...+.... ....+++++|++.+++.++..+... |+ .+.+.++
T Consensus 203 ------------~--~~~~~~~~~~~~---------~~~~~~~~~~~a~~~~~l~~~~~~~~~G~--~i~~dgg 251 (256)
T PRK06124 203 ------------A--DPAVGPWLAQRT---------PLGRWGRPEEIAGAAVFLASPAASYVNGH--VLAVDGG 251 (256)
T ss_pred ------------c--ChHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcCcccCCcCCC--EEEECCC
Confidence 0 011111121111 1124789999999999999876443 44 6666543
|
|
| >PRK12744 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4e-19 Score=169.26 Aligned_cols=237 Identities=17% Similarity=0.104 Sum_probs=155.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.++++.|+++|++|+++++....... ...+..+.+.. .+.++.++.+|++|
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~------------~~~~~~~~l~~-~~~~~~~~~~D~~~ 72 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKA------------DAEETVAAVKA-AGAKAVAFQADLTT 72 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchH------------HHHHHHHHHHH-hCCcEEEEecCcCC
Confidence 467899999999999999999999999998777654321100 01111111111 13468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccC
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGT 236 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~ 236 (479)
+++++++++.. ++|+||||||...... ...+.+++.+++++|+.++..+++++...- ...++++++|+.....
T Consensus 73 ~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss~~~~~ 152 (257)
T PRK12744 73 AAAVEKLFDDAKAAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTSLLGAF 152 (257)
T ss_pred HHHHHHHHHHHHHhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecchhccc
Confidence 99998887642 6899999999754322 223445678889999999999999886531 1126666543222111
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
......|+.+|++.|.+++.+++++ |+++++++||.+..+...+..
T Consensus 153 ------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~t~~~~~~~------- 201 (257)
T PRK12744 153 ------------------------TPFYSAYAGSKAPVEHFTRAASKEFGARGISVTAVGPGPMDTPFFYPQE------- 201 (257)
T ss_pred ------------------------CCCcccchhhHHHHHHHHHHHHHHhCcCceEEEEEecCccccchhcccc-------
Confidence 0124689999999999999999885 699999999999776421100
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC-CCCceEEEeCCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ-PGEFRVFNQFTE 381 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~-~g~~~~~ni~~~ 381 (479)
+ .... .+....... .......+.+++|++.++..+++.... .|+ ++++.++
T Consensus 202 -----~--~~~~-~~~~~~~~~-------~~~~~~~~~~~~dva~~~~~l~~~~~~~~g~--~~~~~gg 253 (257)
T PRK12744 202 -----G--AEAV-AYHKTAAAL-------SPFSKTGLTDIEDIVPFIRFLVTDGWWITGQ--TILINGG 253 (257)
T ss_pred -----c--cchh-hcccccccc-------cccccCCCCCHHHHHHHHHHhhcccceeecc--eEeecCC
Confidence 0 0000 000000000 111122578999999999999985211 354 8888765
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.8e-19 Score=166.99 Aligned_cols=208 Identities=17% Similarity=0.157 Sum_probs=149.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|++|||||+|+||.+++++|+++|++|++++|...... +..+.... .+.++.++.+|++|.
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~----------------~~~~~~~~-~~~~~~~~~~D~~~~ 67 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVARSQDALE----------------ALAAELRS-TGVKAAAYSIDLSNP 67 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH----------------HHHHHHHh-CCCcEEEEEccCCCH
Confidence 4689999999999999999999999999999998643210 11111111 234788899999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccccc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEY 234 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~ 234 (479)
+++.++++.. ++|+||||||...... ...+.+++..++++|+.++.++++.+. +.+.+ +||++||...+
T Consensus 68 ~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~isS~~~~ 146 (241)
T PRK07454 68 EAIAPGIAELLEQFGCPDVLINNAGMAYTGPLLEMPLSDWQWVIQLNLTSVFQCCSAVLPGMRARGGG-LIINVSSIAAR 146 (241)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCccCCCchhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCc-EEEEEccHHhC
Confidence 9888877642 5999999999754322 122334567788999999999887763 33444 89999997665
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
+. ..+...|+.+|.+.+.+++.++.+ .|++++++|||.+-.+.....
T Consensus 147 ~~------------------------~~~~~~Y~~sK~~~~~~~~~~a~e~~~~gi~v~~i~pg~i~t~~~~~~------ 196 (241)
T PRK07454 147 NA------------------------FPQWGAYCVSKAALAAFTKCLAEEERSHGIRVCTITLGAVNTPLWDTE------ 196 (241)
T ss_pred cC------------------------CCCccHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEecCcccCCccccc------
Confidence 32 123578999999999999888765 489999999999876632100
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA 368 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~ 368 (479)
...... ....++..+|+|++++.++..+.
T Consensus 197 ------------------------~~~~~~----~~~~~~~~~~va~~~~~l~~~~~ 225 (241)
T PRK07454 197 ------------------------TVQADF----DRSAMLSPEQVAQTILHLAQLPP 225 (241)
T ss_pred ------------------------cccccc----ccccCCCHHHHHHHHHHHHcCCc
Confidence 000000 01135789999999999998764
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.7e-19 Score=170.32 Aligned_cols=226 Identities=15% Similarity=0.096 Sum_probs=156.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+||||||+|+||.+++++|+++|++|+++++..... .....+... ..+.++.++.+|++|++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~Dl~~~~ 65 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEG---------------AKETAEEVR-SHGVRAEIRQLDLSDLP 65 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHH---------------HHHHHHHHH-hcCCceEEEEccCCCHH
Confidence 67999999999999999999999999998886543211 001111111 12357889999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeecccccc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMGEYG 235 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~v~g 235 (479)
+++++++.. .+|+||||||..... ....+.+++..++++|+.++.++++++... +...+||++||....
T Consensus 66 ~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~- 144 (256)
T PRK12743 66 EGAQALDKLIQRLGRIDVLVNNAGAMTKAPFLDMDFDEWRKIFTVDVDGAFLCSQIAARHMVKQGQGGRIINITSVHEH- 144 (256)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCeEEEEEeecccc-
Confidence 888777642 589999999975432 122345567888999999999999887543 222389999995321
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
.+..+...|+.+|++.+.+++.++.++ |++++.++||.+.++.....
T Consensus 145 -----------------------~~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~Pg~~~t~~~~~~------- 194 (256)
T PRK12743 145 -----------------------TPLPGASAYTAAKHALGGLTKAMALELVEHGILVNAVAPGAIATPMNGMD------- 194 (256)
T ss_pred -----------------------CCCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCcccccc-------
Confidence 123446799999999999999988764 79999999999998753210
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
..........+.+ ...+.+.+|++.++..++..... .|+ ++.+.++
T Consensus 195 ------------~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~~dgg 242 (256)
T PRK12743 195 ------------DSDVKPDSRPGIP---------LGRPGDTHEIASLVAWLCSEGASYTTGQ--SLIVDGG 242 (256)
T ss_pred ------------ChHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHhCccccCcCCc--EEEECCC
Confidence 0011111111111 11246889999999998876443 344 7777765
|
|
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.5e-19 Score=163.45 Aligned_cols=212 Identities=17% Similarity=0.152 Sum_probs=157.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+.+++++||||||++||..++++|+++|++|+++.|.... +.+..+++....+-.+.++.+|++
T Consensus 3 ~~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~k----------------L~~la~~l~~~~~v~v~vi~~DLs 66 (265)
T COG0300 3 PMKGKTALITGASSGIGAELAKQLARRGYNLILVARREDK----------------LEALAKELEDKTGVEVEVIPADLS 66 (265)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHH----------------HHHHHHHHHHhhCceEEEEECcCC
Confidence 3568899999999999999999999999999999987542 233344444444567899999999
Q ss_pred ChHHHHHHhhh-----cCCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKS-----FEPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~-----~~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~ 232 (479)
++++++.+... ..+|++|||||..... ....+.++...++++|+.++..+..+. .+.+.+ +||+++|..
T Consensus 67 ~~~~~~~l~~~l~~~~~~IdvLVNNAG~g~~g~f~~~~~~~~~~mi~lN~~a~~~LT~~~lp~m~~~~~G-~IiNI~S~a 145 (265)
T COG0300 67 DPEALERLEDELKERGGPIDVLVNNAGFGTFGPFLELSLDEEEEMIQLNILALTRLTKAVLPGMVERGAG-HIINIGSAA 145 (265)
T ss_pred ChhHHHHHHHHHHhcCCcccEEEECCCcCCccchhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEechh
Confidence 99988887753 2699999999987654 333455566788999999977776555 455666 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
-+- |..-...|++||+..-.+.+.+..| .|++++.|-||.+.-...
T Consensus 146 g~~------------------------p~p~~avY~ATKa~v~~fSeaL~~EL~~~gV~V~~v~PG~~~T~f~------- 194 (265)
T COG0300 146 GLI------------------------PTPYMAVYSATKAFVLSFSEALREELKGTGVKVTAVCPGPTRTEFF------- 194 (265)
T ss_pred hcC------------------------CCcchHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEEecCccccccc-------
Confidence 441 3334789999999999998888877 379999999988765432
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP 367 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~ 367 (479)
. ..+..... .....-++..+|+|++.+.++.+.
T Consensus 195 --------------------~--~~~~~~~~---~~~~~~~~~~~~va~~~~~~l~~~ 227 (265)
T COG0300 195 --------------------D--AKGSDVYL---LSPGELVLSPEDVAEAALKALEKG 227 (265)
T ss_pred --------------------c--cccccccc---ccchhhccCHHHHHHHHHHHHhcC
Confidence 1 01111100 012346789999999999999874
|
|
| >PRK08219 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.8e-19 Score=165.92 Aligned_cols=212 Identities=16% Similarity=0.108 Sum_probs=148.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|++|||||+|+||.++++.|+++ ++|++++|..... +...+. ..++.++.+|++|.+
T Consensus 3 ~~~vlVtG~~g~iG~~l~~~l~~~-~~V~~~~r~~~~~--------------------~~~~~~-~~~~~~~~~D~~~~~ 60 (227)
T PRK08219 3 RPTALITGASRGIGAAIARELAPT-HTLLLGGRPAERL--------------------DELAAE-LPGATPFPVDLTDPE 60 (227)
T ss_pred CCEEEEecCCcHHHHHHHHHHHhh-CCEEEEeCCHHHH--------------------HHHHHH-hccceEEecCCCCHH
Confidence 579999999999999999999999 9999999864311 011000 135788999999999
Q ss_pred HHHHHhhhc-CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHH----HHHcCCcceEEEeeccccccCCCC
Q 011707 166 FLSESFKSF-EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFA----MKEFRQECHLVKLGTMGEYGTPNI 239 (479)
Q Consensus 166 ~~~~~~~~~-~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~----a~~~g~~~~~V~~SS~~v~g~~~~ 239 (479)
++.++++.. ++|+|||+||...... ...++.++...+++|+.+..++.+. +++.+ + ++|++||...++..
T Consensus 61 ~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-~-~~v~~ss~~~~~~~-- 136 (227)
T PRK08219 61 AIAAAVEQLGRLDVLVHNAGVADLGPVAESTVDEWRATLEVNVVAPAELTRLLLPALRAAH-G-HVVFINSGAGLRAN-- 136 (227)
T ss_pred HHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCC-C-eEEEEcchHhcCcC--
Confidence 999998754 5999999999754322 2224445667789999995555544 44443 4 89999987655321
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-C-CceEEeecCeeecCCCCchhhhHhhhcccCC
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-G-IRATDLNQGVVYGVRTDETAMHEELCNRLDY 317 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-g-l~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~ 317 (479)
.+...|+.+|.+.+.+++.++.+. + +++++++||.+.++...
T Consensus 137 ----------------------~~~~~y~~~K~a~~~~~~~~~~~~~~~i~~~~i~pg~~~~~~~~-------------- 180 (227)
T PRK08219 137 ----------------------PGWGSYAASKFALRALADALREEEPGNVRVTSVHPGRTDTDMQR-------------- 180 (227)
T ss_pred ----------------------CCCchHHHHHHHHHHHHHHHHHHhcCCceEEEEecCCccchHhh--------------
Confidence 235789999999999998887653 4 89999999877654211
Q ss_pred CCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 318 DGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
.+... .+.. .....+++++|++++++.+++++. .+. ++|+.-
T Consensus 181 ---------~~~~~--~~~~-------~~~~~~~~~~dva~~~~~~l~~~~-~~~--~~~~~~ 222 (227)
T PRK08219 181 ---------GLVAQ--EGGE-------YDPERYLRPETVAKAVRFAVDAPP-DAH--ITEVVV 222 (227)
T ss_pred ---------hhhhh--hccc-------cCCCCCCCHHHHHHHHHHHHcCCC-CCc--cceEEE
Confidence 11110 0111 112468999999999999998754 233 777654
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=168.66 Aligned_cols=224 Identities=13% Similarity=0.117 Sum_probs=153.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++++++|||||+|+||.+++++|+++|+.|++.++.... ++......+.++.++.+|++|
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~~v~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~D~~~ 63 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGAIVGLHGTRVEK--------------------LEALAAELGERVKIFPANLSD 63 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHH--------------------HHHHHHHhCCceEEEEccCCC
Confidence 357899999999999999999999999988877664321 111111112467889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc-c
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM-G 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~-~ 232 (479)
.+++++++++. ++|+||||||...... .....+++..++++|+.++.++++++.+ .+.+ +||++||. +
T Consensus 64 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~ 142 (245)
T PRK12936 64 RDEVKALGQKAEADLEGVDILVNNAGITKDGLFVRMSDEDWDSVLEVNLTATFRLTRELTHPMMRRRYG-RIINITSVVG 142 (245)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCC-EEEEECCHHh
Confidence 99988876532 5899999999754321 1223345677899999999999887743 3444 89999995 4
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.++.+ ....|+.+|.+.+.+++.++.+ .|+++++++||.+..+....
T Consensus 143 ~~~~~-------------------------~~~~Y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~----- 192 (245)
T PRK12936 143 VTGNP-------------------------GQANYCASKAGMIGFSKSLAQEIATRNVTVNCVAPGFIESAMTGK----- 192 (245)
T ss_pred CcCCC-------------------------CCcchHHHHHHHHHHHHHHHHHhhHhCeEEEEEEECcCcCchhcc-----
Confidence 44432 2467999999999999888776 37999999999876553211
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
..........+. .....+.+.+|+++++..++......-.++++++.++
T Consensus 193 ---------------~~~~~~~~~~~~--------~~~~~~~~~~~ia~~~~~l~~~~~~~~~G~~~~~~~g 241 (245)
T PRK12936 193 ---------------LNDKQKEAIMGA--------IPMKRMGTGAEVASAVAYLASSEAAYVTGQTIHVNGG 241 (245)
T ss_pred ---------------cChHHHHHHhcC--------CCCCCCcCHHHHHHHHHHHcCccccCcCCCEEEECCC
Confidence 000001111110 1123456799999999888865433212238998875
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=3e-19 Score=175.84 Aligned_cols=201 Identities=16% Similarity=0.135 Sum_probs=136.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++|+||||||+|+||.+++++|+++|++|++++|..... .+....+. ....++.++.+|++|
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~----------------~~~~~~l~-~~~~~~~~~~~Dl~~ 66 (322)
T PRK07453 4 DAKGTVIITGASSGVGLYAAKALAKRGWHVIMACRNLKKA----------------EAAAQELG-IPPDSYTIIHIDLGD 66 (322)
T ss_pred CCCCEEEEEcCCChHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHhh-ccCCceEEEEecCCC
Confidence 3578999999999999999999999999999998754321 11111111 123468899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHHHc----CC-cceEEEeecc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQ-ECHLVKLGTM 231 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~-~~~~V~~SS~ 231 (479)
.++++++++.. ++|+||||||..... ....+++++..++++|+.|+.++++++... +. ..+||++||.
T Consensus 67 ~~~v~~~~~~~~~~~~~iD~li~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~riV~vsS~ 146 (322)
T PRK07453 67 LDSVRRFVDDFRALGKPLDALVCNAAVYMPLLKEPLRSPQGYELSMATNHLGHFLLCNLLLEDLKKSPAPDPRLVILGTV 146 (322)
T ss_pred HHHHHHHHHHHHHhCCCccEEEECCcccCCCCCCCCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCCCCceEEEEccc
Confidence 99998887642 599999999975422 122345567888999999999998887642 21 1399999997
Q ss_pred ccccCC-CC--CCc--CC--ceeecCCCCC----CCCCCCCCCCchhhhhhHHHHHHHHHHHHHh----CCceEEeecCe
Q 011707 232 GEYGTP-NI--DIE--EG--YITINHNGRT----DTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQGV 296 (479)
Q Consensus 232 ~v~g~~-~~--~~~--e~--~~~~~~~~~~----~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gl~~~ivRp~~ 296 (479)
..+... .. +.. ++ ++.....+.. .....+..+...|+.||++.+.+++.+++++ |++++++|||+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~ 226 (322)
T PRK07453 147 TANPKELGGKIPIPAPADLGDLSGFEAGFKAPISMADGKKFKPGKAYKDSKLCNMLTMRELHRRYHESTGITFSSLYPGC 226 (322)
T ss_pred ccCccccCCccCCCCccchhhhhcchhcccccccccCccCCCccchhhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCc
Confidence 654321 10 111 10 0000000000 0001233567899999999999998888875 79999999999
Q ss_pred eecCC
Q 011707 297 VYGVR 301 (479)
Q Consensus 297 v~Gp~ 301 (479)
|++..
T Consensus 227 v~~t~ 231 (322)
T PRK07453 227 VADTP 231 (322)
T ss_pred ccCCc
Confidence 98754
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=166.32 Aligned_cols=230 Identities=13% Similarity=0.075 Sum_probs=160.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~ 162 (479)
+++|++|||||+|+||.++++.|+++|++|++++|..... .+....+... .+.++.++.+|++
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~~Dl~ 70 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGADVLIVARDADAL----------------AQARDELAEEFPEREVHGLAADVS 70 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHH----------------HHHHHHHHhhCCCCeEEEEECCCC
Confidence 4689999999999999999999999999999998754321 1111121111 1347888999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
+.++++++++.. ++|+|||+||..... ....+.+++...+++|+.++.++++++.. .+.+ +||++||..
T Consensus 71 ~~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~ii~~sS~~ 149 (257)
T PRK09242 71 DDEDRRAILDWVEDHWDGLHILVNNAGGNIRKAAIDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASS-AIVNIGSVS 149 (257)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc-eEEEECccc
Confidence 999887777642 689999999974322 22335566788899999999999988753 3444 899999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+.. ..+...|+.+|.+.+.+++.++.++ |++++.++||.+.++......
T Consensus 150 ~~~~------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~i~t~~~~~~~--- 202 (257)
T PRK09242 150 GLTH------------------------VRSGAPYGMTKAALLQMTRNLAVEWAEDGIRVNAVAPWYIRTPLTSGPL--- 202 (257)
T ss_pred cCCC------------------------CCCCcchHHHHHHHHHHHHHHHHHHHHhCeEEEEEEECCCCCccccccc---
Confidence 4432 2335789999999999999988764 899999999999887532100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
. ...+........+ ..-+...+|++.++..++..... .|+ ++.+.++.
T Consensus 203 ------------~--~~~~~~~~~~~~~---------~~~~~~~~~va~~~~~l~~~~~~~~~g~--~i~~~gg~ 252 (257)
T PRK09242 203 ------------S--DPDYYEQVIERTP---------MRRVGEPEEVAAAVAFLCMPAASYITGQ--CIAVDGGF 252 (257)
T ss_pred ------------C--ChHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCcccccccCC--EEEECCCe
Confidence 0 0122222222221 12345678999999999875433 344 77776543
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=165.04 Aligned_cols=231 Identities=16% Similarity=0.105 Sum_probs=157.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.+ .+.++.++.+|++
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~ 67 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGC----------------QAVADAIVA-AGGKAEALACHIG 67 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCeEEEEEcCCC
Confidence 45689999999999999999999999999999998754321 111111111 1245778999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~ 231 (479)
+.++++++++.. .+|+|||+||.... +....+.+++...+++|+.++..+++++. +.+.+ ++|++||.
T Consensus 68 ~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~ 146 (252)
T PRK07035 68 EMEQIDALFAHIRERHGRLDILVNNAAANPYFGHILDTDLGAFQKTVDVNIRGYFFMSVEAGKLMKEQGGG-SIVNVASV 146 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCc-EEEEECch
Confidence 999888777643 58999999986421 22233445567789999999998887773 33445 89999985
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +..+...|+.||++.+.+++.++.++ |++++.+.||.|..+......
T Consensus 147 ~~~~------------------------~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~i~PG~v~t~~~~~~~-- 200 (252)
T PRK07035 147 NGVS------------------------PGDFQGIYSITKAAVISMTKAFAKECAPFGIRVNALLPGLTDTKFASALF-- 200 (252)
T ss_pred hhcC------------------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeccccCccccccc--
Confidence 3221 22346789999999999999998874 799999999988655321100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. ...........+ ...+...+|++++++.++.+......++++++.++
T Consensus 201 -------------~~--~~~~~~~~~~~~---------~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~dgg 249 (252)
T PRK07035 201 -------------KN--DAILKQALAHIP---------LRRHAEPSEMAGAVLYLASDASSYTTGECLNVDGG 249 (252)
T ss_pred -------------CC--HHHHHHHHccCC---------CCCcCCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 00 011122221111 22456789999999999876544222237777654
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.2e-19 Score=169.71 Aligned_cols=229 Identities=12% Similarity=0.039 Sum_probs=156.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++++++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|+++
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~D~~~ 70 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQL----------------DEVAEQIRA-AGRRAHVVAADLAH 70 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEEccCCC
Confidence 5689999999999999999999999999999998854311 111111111 13468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH-----cCCcceEEEeeccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE-----FRQECHLVKLGTMG 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~-----~g~~~~~V~~SS~~ 232 (479)
++++.++++.. ++|+|||+||...... ...+.+++...+++|+.++.++++++.. .+.+ +||++||..
T Consensus 71 ~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g-~iv~~sS~~ 149 (263)
T PRK07814 71 PEATAGLAGQAVEAFGRLDIVVNNVGGTMPNPLLSTSTKDLADAFTFNVATAHALTVAAVPLMLEHSGGG-SVINISSTM 149 (263)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhcHHHHHHHHHHHHHHHhhcCCe-EEEEEcccc
Confidence 99988777643 6899999999644322 2234456678899999999999999864 3344 899999943
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCCCCchhhhHh
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
-.. +..+...|+.+|++.+.+++.++.+. +++++.++||.+..+....-
T Consensus 150 ~~~------------------------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~i~v~~i~Pg~v~t~~~~~~----- 200 (263)
T PRK07814 150 GRL------------------------AGRGFAAYGTAKAALAHYTRLAALDLCPRIRVNAIAPGSILTSALEVV----- 200 (263)
T ss_pred ccC------------------------CCCCCchhHHHHHHHHHHHHHHHHHHCCCceEEEEEeCCCcCchhhhc-----
Confidence 211 22346789999999999999998875 57899999998865531100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
.. -..+........ ....+..++|++++++.++......-.++.+.+.+
T Consensus 201 -----------~~-~~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~ 249 (263)
T PRK07814 201 -----------AA-NDELRAPMEKAT---------PLRRLGDPEDIAAAAVYLASPAGSYLTGKTLEVDG 249 (263)
T ss_pred -----------cC-CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCccccCcCCCEEEECC
Confidence 00 001111111111 11235688999999999987543321223666655
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-19 Score=168.42 Aligned_cols=234 Identities=14% Similarity=0.067 Sum_probs=156.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.++++.|+++|++|++++|. .. +.+..+.+.+ .+.++.++.+|+++
T Consensus 4 l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~-~~----------------~~~~~~~~~~-~~~~~~~~~~Dl~~ 65 (272)
T PRK08589 4 LENKVAVITGASTGIGQASAIALAQEGAYVLAVDIA-EA----------------VSETVDKIKS-NGGKAKAYHVDISD 65 (272)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCc-HH----------------HHHHHHHHHh-cCCeEEEEEeecCC
Confidence 468999999999999999999999999999999875 21 1111222211 13468899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
++++.++++.. ++|++|||||.... .....+.+++..++++|+.|+..+++++.. .+ + +||++||..
T Consensus 66 ~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~-g-~iv~isS~~ 143 (272)
T PRK08589 66 EQQVKDFASEIKEQFGRVDVLFNNAGVDNAAGRIHEYPVDVFDKIMAVDMRGTFLMTKMLLPLMMEQG-G-SIINTSSFS 143 (272)
T ss_pred HHHHHHHHHHHHHHcCCcCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-C-EEEEeCchh
Confidence 98888777643 58999999997532 122234456778899999999888777643 33 4 899999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.+|++.+.+++.++.++ |++++++.||.|..+....-.
T Consensus 144 ~~~------------------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~PG~v~T~~~~~~~--- 196 (272)
T PRK08589 144 GQA------------------------ADLYRSGYNAAKGAVINFTKSIAIEYGRDGIRANAIAPGTIETPLVDKLT--- 196 (272)
T ss_pred hcC------------------------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCchhhhhc---
Confidence 432 11235789999999999999998875 799999999998766321100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
+.........+...... . .....+..++|++++++.++......-.++++.+.++
T Consensus 197 ---------~~~~~~~~~~~~~~~~~----~----~~~~~~~~~~~va~~~~~l~s~~~~~~~G~~i~vdgg 251 (272)
T PRK08589 197 ---------GTSEDEAGKTFRENQKW----M----TPLGRLGKPEEVAKLVVFLASDDSSFITGETIRIDGG 251 (272)
T ss_pred ---------ccchhhHHHHHhhhhhc----c----CCCCCCcCHHHHHHHHHHHcCchhcCcCCCEEEECCC
Confidence 00000000000000000 0 1122357899999999998875433212237777665
|
|
| >PRK12742 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.5e-18 Score=163.11 Aligned_cols=225 Identities=11% Similarity=-0.003 Sum_probs=153.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|+++.+.... ..+.+... .++.++.+|++|
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~-------------------~~~~l~~~--~~~~~~~~D~~~ 62 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKD-------------------AAERLAQE--TGATAVQTDSAD 62 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHH-------------------HHHHHHHH--hCCeEEecCCCC
Confidence 468999999999999999999999999999887653221 01111110 135678899999
Q ss_pred hHHHHHHhhhc-CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccccCCCCC
Q 011707 164 FEFLSESFKSF-EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEYGTPNID 240 (479)
Q Consensus 164 ~~~~~~~~~~~-~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~g~~~~~ 240 (479)
.+++.++++.. ++|+||||||..... ....+++++..++++|+.|+.+++..+... ....+||++||.....
T Consensus 63 ~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS~~~~~----- 137 (237)
T PRK12742 63 RDAVIDVVRKSGALDILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIGSVNGDR----- 137 (237)
T ss_pred HHHHHHHHHHhCCCcEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEecccccc-----
Confidence 99888888754 489999999975432 223355677889999999999998766553 2223899999953211
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhcccCC
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCNRLDY 317 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~ 317 (479)
.+..+...|+.+|++.|.+++.++.++ |+++++++||.+..+.....
T Consensus 138 ------------------~~~~~~~~Y~~sKaa~~~~~~~la~~~~~~gi~v~~v~Pg~~~t~~~~~~------------ 187 (237)
T PRK12742 138 ------------------MPVAGMAAYAASKSALQGMARGLARDFGPRGITINVVQPGPIDTDANPAN------------ 187 (237)
T ss_pred ------------------CCCCCCcchHHhHHHHHHHHHHHHHHHhhhCeEEEEEecCcccCCccccc------------
Confidence 122346789999999999999988864 79999999999976642110
Q ss_pred CCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 318 DGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
........... ....+...+|++.++..++......-.+.++.+.++
T Consensus 188 --------~~~~~~~~~~~---------~~~~~~~p~~~a~~~~~l~s~~~~~~~G~~~~~dgg 234 (237)
T PRK12742 188 --------GPMKDMMHSFM---------AIKRHGRPEEVAGMVAWLAGPEASFVTGAMHTIDGA 234 (237)
T ss_pred --------cHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcCcccCcccCCEEEeCCC
Confidence 01111111111 112357889999999998876443212237766553
|
|
| >TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-19 Score=164.86 Aligned_cols=223 Identities=16% Similarity=0.121 Sum_probs=154.6
Q ss_pred EEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHHH
Q 011707 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLS 168 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~~ 168 (479)
|||||++|+||.+++++|+++|++|++++|..... .......... .+.++.++.+|++|.++++
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~---------------~~~~~~~~~~-~~~~~~~~~~D~~~~~~~~ 64 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGAKVIITYRSSEEG---------------AEEVVEELKA-YGVKALGVVCDVSDREDVK 64 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhH---------------HHHHHHHHHh-cCCceEEEEecCCCHHHHH
Confidence 58999999999999999999999999998754210 0011111111 1235788999999999988
Q ss_pred HHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc-ccccCC
Q 011707 169 ESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM-GEYGTP 237 (479)
Q Consensus 169 ~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~-~v~g~~ 237 (479)
++++.. .+|+|||+||...... ...+.+++...+++|+.++.++++++.. .+.+ +||++||. +++|.+
T Consensus 65 ~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~v~~sS~~~~~g~~ 143 (239)
T TIGR01830 65 AVVEEIEEELGPIDILVNNAGITRDNLLMRMKEEDWDAVIDTNLTGVFNLTQAVLRIMIKQRSG-RIINISSVVGLMGNA 143 (239)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCe-EEEEECCccccCCCC
Confidence 887642 5899999999754321 1223345677889999999999998865 3444 89999994 555432
Q ss_pred CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
....|+.+|.+.+.+++.++++ .|+++++++||.+.++....
T Consensus 144 -------------------------~~~~y~~~k~a~~~~~~~l~~~~~~~g~~~~~i~pg~~~~~~~~~---------- 188 (239)
T TIGR01830 144 -------------------------GQANYAASKAGVIGFTKSLAKELASRNITVNAVAPGFIDTDMTDK---------- 188 (239)
T ss_pred -------------------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECCCCChhhhh----------
Confidence 2578999999999999888776 48999999999886653211
Q ss_pred cCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
....+........+ ..-+.+++|++.+++.++.........++||+.++
T Consensus 189 ---------~~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~g 237 (239)
T TIGR01830 189 ---------LSEKVKKKILSQIP---------LGRFGTPEEVANAVAFLASDEASYITGQVIHVDGG 237 (239)
T ss_pred ---------cChHHHHHHHhcCC---------cCCCcCHHHHHHHHHHHhCcccCCcCCCEEEeCCC
Confidence 00111222222211 12366899999999998865433223349999764
|
This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis. |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.9e-19 Score=173.27 Aligned_cols=220 Identities=13% Similarity=0.063 Sum_probs=155.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
++++++||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l----------------~~~~~~l~~-~g~~~~~v~~Dv~ 67 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGL----------------EALAAEIRA-AGGEALAVVADVA 67 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHH-cCCcEEEEEecCC
Confidence 35678999999999999999999999999999998754311 111111111 2346888999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~ 232 (479)
|.++++++++.. ++|++|||||..... ....+++++.+++++|+.|+.++.+.+ ++.+.+ +||++||..
T Consensus 68 d~~~v~~~~~~~~~~~g~iD~lInnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g-~iV~isS~~ 146 (334)
T PRK07109 68 DAEAVQAAADRAEEELGPIDTWVNNAMVTVFGPFEDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRG-AIIQVGSAL 146 (334)
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEeCChh
Confidence 999998887642 699999999975432 233455677888999999887766555 444445 899999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-----CCceEEeecCeeecCCCCchhh
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-----GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
.+... .....|+.+|++.+.+++.++.+. ++++++++||.|..|...
T Consensus 147 ~~~~~------------------------~~~~~Y~asK~a~~~~~~~l~~el~~~~~~I~v~~v~Pg~v~T~~~~---- 198 (334)
T PRK07109 147 AYRSI------------------------PLQSAYCAAKHAIRGFTDSLRCELLHDGSPVSVTMVQPPAVNTPQFD---- 198 (334)
T ss_pred hccCC------------------------CcchHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCCccCchhh----
Confidence 65321 235789999999999998887663 599999999998766311
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
. ........ ......+...+|+|++++.++.++. . .+.+++
T Consensus 199 -------------------~-~~~~~~~~-------~~~~~~~~~pe~vA~~i~~~~~~~~---~--~~~vg~ 239 (334)
T PRK07109 199 -------------------W-ARSRLPVE-------PQPVPPIYQPEVVADAILYAAEHPR---R--ELWVGG 239 (334)
T ss_pred -------------------h-hhhhcccc-------ccCCCCCCCHHHHHHHHHHHHhCCC---c--EEEeCc
Confidence 0 11111000 1112345789999999999998752 2 566664
|
|
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.4e-19 Score=168.26 Aligned_cols=170 Identities=18% Similarity=0.135 Sum_probs=125.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+||||||+|+||.+++++|+++|++|++++|..... +.+.......+.++.++.+|++|++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~-----------------~~~~~~~~~~~~~~~~~~~D~~~~~ 64 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQIAPQV-----------------TALRAEAARRGLALRVEKLDLTDAI 64 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-----------------HHHHHHHHhcCCcceEEEeeCCCHH
Confidence 57899999999999999999999999999988754311 0111111112346889999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccccccCCCCC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEYGTPNID 240 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~g~~~~~ 240 (479)
++.+++.. ++|+||||||....... ..+.+++...+++|+.++.++.+.+ ++.+.+ +||++||...+.
T Consensus 65 ~~~~~~~~-~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~SS~~~~~----- 137 (257)
T PRK09291 65 DRAQAAEW-DVDVLLNNAGIGEAGAVVDIPVELVRELFETNVFGPLELTQGFVRKMVARGKG-KVVFTSSMAGLI----- 137 (257)
T ss_pred HHHHHhcC-CCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-eEEEEcChhhcc-----
Confidence 99888764 79999999997643322 2234456677899999987776544 445665 999999954221
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeee
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVY 298 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~ 298 (479)
.......|+.+|.+.|.+++.++.+ .|++++++|||.+.
T Consensus 138 -------------------~~~~~~~Y~~sK~a~~~~~~~l~~~~~~~gi~~~~v~pg~~~ 179 (257)
T PRK09291 138 -------------------TGPFTGAYCASKHALEAIAEAMHAELKPFGIQVATVNPGPYL 179 (257)
T ss_pred -------------------CCCCcchhHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCccc
Confidence 1122568999999999999887765 58999999998864
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.6e-19 Score=168.62 Aligned_cols=233 Identities=18% Similarity=0.188 Sum_probs=158.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+++||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++|
T Consensus 8 ~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~Dl~~ 70 (278)
T PRK08277 8 LKGKVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKA----------------EAVVAEIKA-AGGEALAVKADVLD 70 (278)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCeEEEEECCCCC
Confidence 4689999999999999999999999999999998753211 111122211 13468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc----------------ccccccccchhhhhhHHHHHHHHHHHH----H
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY----------------SMIDRSRAVFTQHNNVIGTLNVLFAMK----E 218 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~----------------~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~ 218 (479)
.+++.++++.. ++|+||||||...... ...+.+++...+++|+.++..+++++. +
T Consensus 71 ~~~v~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~ 150 (278)
T PRK08277 71 KESLEQARQQILEDFGPCDILINGAGGNHPKATTDNEFHELIEPTKTFFDLDEEGFEFVFDLNLLGTLLPTQVFAKDMVG 150 (278)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCcccccccccccccccccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Confidence 99888777642 6999999999643221 122345577889999999987776553 3
Q ss_pred cCCcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecC
Q 011707 219 FRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQG 295 (479)
Q Consensus 219 ~g~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~ 295 (479)
.+.+ +||++||...+. +..+...|+.+|++.+.+++.++.++ |+++++++||
T Consensus 151 ~~~g-~ii~isS~~~~~------------------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~girvn~v~Pg 205 (278)
T PRK08277 151 RKGG-NIINISSMNAFT------------------------PLTKVPAYSAAKAAISNFTQWLAVHFAKVGIRVNAIAPG 205 (278)
T ss_pred cCCc-EEEEEccchhcC------------------------CCCCCchhHHHHHHHHHHHHHHHHHhCccCeEEEEEEec
Confidence 3444 899999976553 22336789999999999999999886 7999999999
Q ss_pred eeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhC-CCC--CCC
Q 011707 296 VVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN-PAQ--PGE 372 (479)
Q Consensus 296 ~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~-~~~--~g~ 372 (479)
.|..+...... . ...+. .......+... .....+...+|++++++.++.. ... .|+
T Consensus 206 ~v~t~~~~~~~------~--~~~~~----~~~~~~~~~~~---------~p~~r~~~~~dva~~~~~l~s~~~~~~~tG~ 264 (278)
T PRK08277 206 FFLTEQNRALL------F--NEDGS----LTERANKILAH---------TPMGRFGKPEELLGTLLWLADEKASSFVTGV 264 (278)
T ss_pred cCcCcchhhhh------c--ccccc----chhHHHHHhcc---------CCccCCCCHHHHHHHHHHHcCccccCCcCCC
Confidence 99887432100 0 00000 00111111111 1123467789999999998876 333 344
Q ss_pred ceEEEeCCC
Q 011707 373 FRVFNQFTE 381 (479)
Q Consensus 373 ~~~~ni~~~ 381 (479)
++.+.++
T Consensus 265 --~i~vdgG 271 (278)
T PRK08277 265 --VLPVDGG 271 (278)
T ss_pred --EEEECCC
Confidence 7777654
|
|
| >PRK12938 acetyacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.5e-19 Score=166.14 Aligned_cols=228 Identities=12% Similarity=0.067 Sum_probs=154.1
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|++|||||+|+||.+++++|+++|++|+++.+..... ..+..+.+.. .+.++..+.+|++|.
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~D~~~~ 65 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPR---------------RVKWLEDQKA-LGFDFIASEGNVGDW 65 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHH---------------HHHHHHHHHh-cCCcEEEEEcCCCCH
Confidence 578999999999999999999999999998764322110 0111111111 134677889999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccccc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEY 234 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~ 234 (479)
+++.+++++. ++|+||||||..... ....+++++..++++|+.++.++++++. +.+.+ +||++||....
T Consensus 66 ~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~isS~~~~ 144 (246)
T PRK12938 66 DSTKAAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWTAVIDTNLTSLFNVTKQVIDGMVERGWG-RIINISSVNGQ 144 (246)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCe-EEEEEechhcc
Confidence 9888877642 689999999975432 2233555678889999999888776654 44555 89999985322
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
. +......|+.+|++.+.+++.++++ .|+++++++||.+.+|....
T Consensus 145 ~------------------------~~~~~~~y~~sK~a~~~~~~~l~~~~~~~gi~v~~i~pg~~~t~~~~~------- 193 (246)
T PRK12938 145 K------------------------GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA------- 193 (246)
T ss_pred C------------------------CCCCChhHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEecccCCchhhh-------
Confidence 1 1223678999999999999888876 47999999999998774211
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.....+..+.... ....+...+|++++++.++..+...-..+++.+.++
T Consensus 194 ------------~~~~~~~~~~~~~---------~~~~~~~~~~v~~~~~~l~~~~~~~~~g~~~~~~~g 242 (246)
T PRK12938 194 ------------IRPDVLEKIVATI---------PVRRLGSPDEIGSIVAWLASEESGFSTGADFSLNGG 242 (246)
T ss_pred ------------cChHHHHHHHhcC---------CccCCcCHHHHHHHHHHHcCcccCCccCcEEEECCc
Confidence 0112222222211 123456789999999998875433222237777653
|
|
| >PRK08264 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.2e-18 Score=163.97 Aligned_cols=169 Identities=15% Similarity=0.051 Sum_probs=132.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+++++||||||+|+||.+++++|+++|+ +|++++|..... .. .+.++.++.+|++
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~~~~~--------------------~~----~~~~~~~~~~D~~ 59 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARDPESV--------------------TD----LGPRVVPLQLDVT 59 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecChhhh--------------------hh----cCCceEEEEecCC
Confidence 4578999999999999999999999999 999998754311 00 2357889999999
Q ss_pred ChHHHHHHhhhc-CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccccc
Q 011707 163 DFEFLSESFKSF-EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGEYG 235 (479)
Q Consensus 163 d~~~~~~~~~~~-~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v~g 235 (479)
|.+++.++++.. .+|+|||+||..... ....+.+++...+++|+.++.++++++.. .+.+ +||++||...+.
T Consensus 60 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~v~~sS~~~~~ 138 (238)
T PRK08264 60 DPASVAAAAEAASDVTILVNNAGIFRTGSLLLEGDEDALRAEMETNYFGPLAMARAFAPVLAANGGG-AIVNVLSVLSWV 138 (238)
T ss_pred CHHHHHHHHHhcCCCCEEEECCCcCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcChhhcc
Confidence 999999988754 489999999973222 22234456677899999999999998753 4444 899999965543
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCC
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVR 301 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~ 301 (479)
+..+...|+.+|.+.|.+++.++.+. +++++++|||.+.++.
T Consensus 139 ------------------------~~~~~~~y~~sK~a~~~~~~~l~~~~~~~~i~~~~v~pg~v~t~~ 183 (238)
T PRK08264 139 ------------------------NFPNLGTYSASKAAAWSLTQALRAELAPQGTRVLGVHPGPIDTDM 183 (238)
T ss_pred ------------------------CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeCCcccccc
Confidence 22336789999999999999888764 8999999999987763
|
|
| >PRK07041 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=5e-19 Score=165.60 Aligned_cols=223 Identities=17% Similarity=0.102 Sum_probs=156.0
Q ss_pred EEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHHHH
Q 011707 90 MIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSE 169 (479)
Q Consensus 90 LVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~~~ 169 (479)
|||||+|+||.+++++|+++|++|++++|..... .+...... .+.+++++.+|++|.+++.+
T Consensus 1 lItGas~~iG~~~a~~l~~~G~~v~~~~r~~~~~----------------~~~~~~~~--~~~~~~~~~~Dl~~~~~~~~ 62 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAEGARVTIASRSRDRL----------------AAAARALG--GGAPVRTAALDITDEAAVDA 62 (230)
T ss_pred CeecCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHh--cCCceEEEEccCCCHHHHHH
Confidence 6999999999999999999999999998753211 11111111 13568899999999999999
Q ss_pred Hhhhc-CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCcee
Q 011707 170 SFKSF-EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYIT 247 (479)
Q Consensus 170 ~~~~~-~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~~~ 247 (479)
+++.. ++|++||+||....... ..+.+++..++++|+.++.+++++....+.+ +||++||...+..
T Consensus 63 ~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~g-~iv~~ss~~~~~~----------- 130 (230)
T PRK07041 63 FFAEAGPFDHVVITAADTPGGPVRALPLAAAQAAMDSKFWGAYRVARAARIAPGG-SLTFVSGFAAVRP----------- 130 (230)
T ss_pred HHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHhhhhhcCCe-EEEEECchhhcCC-----------
Confidence 99864 48999999997543221 2244567888999999999999966555555 9999999766532
Q ss_pred ecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-CCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHH
Q 011707 248 INHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-GIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326 (479)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~ 326 (479)
..+.+.|+.+|++.+.+++.++.++ +++++.++||.+-.+.... . . .....
T Consensus 131 -------------~~~~~~Y~~sK~a~~~~~~~la~e~~~irv~~i~pg~~~t~~~~~------~-----~----~~~~~ 182 (230)
T PRK07041 131 -------------SASGVLQGAINAALEALARGLALELAPVRVNTVSPGLVDTPLWSK------L-----A----GDARE 182 (230)
T ss_pred -------------CCcchHHHHHHHHHHHHHHHHHHHhhCceEEEEeecccccHHHHh------h-----h----ccchH
Confidence 2346789999999999999998875 6899999999876543110 0 0 00001
Q ss_pred HHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 327 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.++.......+ ...+...+|++++++.++......|+ +|++.++
T Consensus 183 ~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~~~~~~~G~--~~~v~gg 226 (230)
T PRK07041 183 AMFAAAAERLP---------ARRVGQPEDVANAILFLAANGFTTGS--TVLVDGG 226 (230)
T ss_pred HHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhcCCCcCCc--EEEeCCC
Confidence 11222222111 11235789999999999986544455 8998874
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=164.54 Aligned_cols=198 Identities=17% Similarity=0.148 Sum_probs=146.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
++++|||||+|+||.+++++|+++|++|++++|.... ++.+... ..++.++.+|++|.+
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~G~~V~~~~r~~~~--------------------~~~~~~~-~~~~~~~~~D~~~~~ 59 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQGWQVIACGRNQSV--------------------LDELHTQ-SANIFTLAFDVTDHP 59 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhCCCEEEEEECCHHH--------------------HHHHHHh-cCCCeEEEeeCCCHH
Confidence 3689999999999999999999999999999885321 1111111 236788999999999
Q ss_pred HHHHHhhhc--CCCEEEEcccccCc-ccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeecc-ccccCCCCC
Q 011707 166 FLSESFKSF--EPDAVVHFGEQRSA-PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTM-GEYGTPNID 240 (479)
Q Consensus 166 ~~~~~~~~~--~~D~Vih~A~~~~~-~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~-~v~g~~~~~ 240 (479)
+++++++.. .+|.+|||||.... .....+++++.+++++|+.|+.++++++... ..+.+||++||. +.++.
T Consensus 60 ~~~~~~~~~~~~~d~~i~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~iv~isS~~~~~~~---- 135 (240)
T PRK06101 60 GTKAALSQLPFIPELWIFNAGDCEYMDDGKVDATLMARVFNVNVLGVANCIEGIQPHLSCGHRVVIVGSIASELAL---- 135 (240)
T ss_pred HHHHHHHhcccCCCEEEEcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCeEEEEechhhccCC----
Confidence 999998853 47999999986432 2222345566788999999999999998763 112379999884 33321
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhhhcccCC
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEELCNRLDY 317 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~ 317 (479)
.....|+.+|++.+.+++.++.+ +|++++++|||.|+++..+..
T Consensus 136 ---------------------~~~~~Y~asK~a~~~~~~~l~~e~~~~gi~v~~v~pg~i~t~~~~~~------------ 182 (240)
T PRK06101 136 ---------------------PRAEAYGASKAAVAYFARTLQLDLRPKGIEVVTVFPGFVATPLTDKN------------ 182 (240)
T ss_pred ---------------------CCCchhhHHHHHHHHHHHHHHHHHHhcCceEEEEeCCcCCCCCcCCC------------
Confidence 23568999999999999988754 489999999999998743210
Q ss_pred CCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC
Q 011707 318 DGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP 367 (479)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~ 367 (479)
.. . ....+..+|+++.++.+++..
T Consensus 183 -------------------~~---~----~~~~~~~~~~a~~i~~~i~~~ 206 (240)
T PRK06101 183 -------------------TF---A----MPMIITVEQASQEIRAQLARG 206 (240)
T ss_pred -------------------CC---C----CCcccCHHHHHHHHHHHHhcC
Confidence 00 0 012378999999999999864
|
|
| >PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.4e-18 Score=162.63 Aligned_cols=227 Identities=15% Similarity=0.052 Sum_probs=156.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEE-ecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIV-DSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+++|+||||||+|+||.++++.|+++|++|+++ +|..... .+....+.. .+.++.++.+|++
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~ 65 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAA----------------QELLEEIKE-EGGDAIAVKADVS 65 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHH----------------HHHHHHHHh-cCCeEEEEECCCC
Confidence 567899999999999999999999999999988 7643211 011111111 2346889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|++++.++++.. ++|+|||+||...... ...+.+++...+++|+.++.++++.+.. .+.+ +||++||..
T Consensus 66 ~~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~~v~~sS~~ 144 (247)
T PRK05565 66 SEEDVENLVEQIVEKFGKIDILVNNAGISNFGLVTDMTDEEWDRVIDVNLTGVMLLTRYALPYMIKRKSG-VIVNISSIW 144 (247)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEECCHh
Confidence 999988877643 6999999999763221 2234455677899999999998887754 3444 899999954
Q ss_pred c-ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 233 E-YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 233 v-~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
. ++.+ ....|+.+|.+.+.+++.++.+. |++++++|||.+..+.....
T Consensus 145 ~~~~~~-------------------------~~~~y~~sK~a~~~~~~~~~~~~~~~gi~~~~v~pg~v~t~~~~~~--- 196 (247)
T PRK05565 145 GLIGAS-------------------------CEVLYSASKGAVNAFTKALAKELAPSGIRVNAVAPGAIDTEMWSSF--- 196 (247)
T ss_pred hccCCC-------------------------CccHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCccCcccccc---
Confidence 3 3322 24679999999999988888764 89999999999876543210
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
........... .....+...+|++++++.++......-.++++++.++
T Consensus 197 ----------------~~~~~~~~~~~---------~~~~~~~~~~~va~~~~~l~~~~~~~~~g~~~~~~~~ 244 (247)
T PRK05565 197 ----------------SEEDKEGLAEE---------IPLGRLGKPEEIAKVVLFLASDDASYITGQIITVDGG 244 (247)
T ss_pred ----------------ChHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCCccCCccCcEEEecCC
Confidence 01111111110 1123467889999999999976544322347877764
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-18 Score=166.83 Aligned_cols=231 Identities=15% Similarity=0.168 Sum_probs=155.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+....+... +.++.++.+|++
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~-~~~~~~~~~Dv~ 68 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKV----------------DAAVAQLQQA-GPEGLGVSADVR 68 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHHh-CCceEEEECCCC
Confidence 45789999999999999999999999999999998864311 1111111111 245678899999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHHHc--CCcceEEEeeccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF--RQECHLVKLGTMGEY 234 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--g~~~~~V~~SS~~v~ 234 (479)
|++++.++++.. ++|+||||||..... ....+.+++.+.+++|+.|+.++++++... ..+.+||++||...+
T Consensus 69 ~~~~i~~~~~~~~~~~~~iD~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~l~~~~g~iv~iss~~~~ 148 (264)
T PRK07576 69 DYAAVEAAFAQIADEFGPIDVLVSGAAGNFPAPAAGMSANGFKTVVDIDLLGTFNVLKAAYPLLRRPGASIIQISAPQAF 148 (264)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCEEEEECChhhc
Confidence 999998887653 589999999854321 122344456778899999999999888642 111389999995432
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
. +......|+.+|++.+.+++.++.++ |+++++++||.+.+...... +
T Consensus 149 ~------------------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v~~v~pg~~~~t~~~~~-----~ 199 (264)
T PRK07576 149 V------------------------PMPMQAHVCAAKAGVDMLTRTLALEWGPEGIRVNSIVPGPIAGTEGMAR-----L 199 (264)
T ss_pred c------------------------CCCCccHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccccCcHHHhh-----c
Confidence 1 11236789999999999999988764 79999999998875321100 0
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. .. .......... .....+....|++++++.++..+.. .|+ .+.+.++
T Consensus 200 ~---------~~--~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~~~gg 249 (264)
T PRK07576 200 A---------PS--PELQAAVAQS---------VPLKRNGTKQDIANAALFLASDMASYITGV--VLPVDGG 249 (264)
T ss_pred c---------cC--HHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcChhhcCccCC--EEEECCC
Confidence 0 00 0000111111 1123457889999999999975432 344 5565553
|
|
| >PRK07904 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=165.09 Aligned_cols=204 Identities=13% Similarity=0.083 Sum_probs=142.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.+++||||||+|+||.+++++|+++| ++|++++|..... +.+..+.+......+++++.+|++|
T Consensus 7 ~~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~---------------~~~~~~~l~~~~~~~v~~~~~D~~~ 71 (253)
T PRK07904 7 NPQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPR---------------RDAAVAQMKAAGASSVEVIDFDALD 71 (253)
T ss_pred CCcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchh---------------HHHHHHHHHhcCCCceEEEEecCCC
Confidence 47899999999999999999999995 9999998864320 1111222222222378999999999
Q ss_pred hHHHHHHhhh----cCCCEEEEcccccCcccc-cccccccchhhhhhHHHHHH----HHHHHHHcCCcceEEEeeccccc
Q 011707 164 FEFLSESFKS----FEPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLN----VLFAMKEFRQECHLVKLGTMGEY 234 (479)
Q Consensus 164 ~~~~~~~~~~----~~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~----ll~~a~~~g~~~~~V~~SS~~v~ 234 (479)
.++++++++. .++|++|||+|....... +.++.+....+++|+.++.. +++++++.+.+ +||++||...+
T Consensus 72 ~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~l~~~~~~~~~~-~iv~isS~~g~ 150 (253)
T PRK07904 72 TDSHPKVIDAAFAGGDVDVAIVAFGLLGDAEELWQNQRKAVQIAEINYTAAVSVGVLLGEKMRAQGFG-QIIAMSSVAGE 150 (253)
T ss_pred hHHHHHHHHHHHhcCCCCEEEEeeecCCchhhcccCHHHHHHHHHHHhHhHHHHHHHHHHHHHhcCCc-eEEEEechhhc
Confidence 9886665543 269999999997543211 22222333568999999877 45566666666 99999996422
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
. +..+...|+.||++...+.+.++.+ +|+++++++||.+..+...
T Consensus 151 ~------------------------~~~~~~~Y~~sKaa~~~~~~~l~~el~~~~i~v~~v~Pg~v~t~~~~-------- 198 (253)
T PRK07904 151 R------------------------VRRSNFVYGSTKAGLDGFYLGLGEALREYGVRVLVVRPGQVRTRMSA-------- 198 (253)
T ss_pred C------------------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCCEEEEEeeCceecchhc--------
Confidence 1 1123467999999999888877654 4899999999999765210
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP 367 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~ 367 (479)
.. .. ....+..+|+|+.++.++++.
T Consensus 199 -------------------~~---~~---------~~~~~~~~~~A~~i~~~~~~~ 223 (253)
T PRK07904 199 -------------------HA---KE---------APLTVDKEDVAKLAVTAVAKG 223 (253)
T ss_pred -------------------cC---CC---------CCCCCCHHHHHHHHHHHHHcC
Confidence 00 00 012368999999999999864
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.2e-19 Score=167.53 Aligned_cols=234 Identities=15% Similarity=0.113 Sum_probs=160.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+.+|++|||||+|+||.+++++|+++|++|+++++.... +.+....+.. .+.++.++.+|++
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~----------------~~~~~~~~~~-~~~~~~~~~~Dl~ 69 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQEL----------------VDKGLAAYRE-LGIEAHGYVCDVT 69 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHH----------------HHHHHHHHHh-cCCceEEEEcCCC
Confidence 3468999999999999999999999999999998765431 1111222221 1346889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc-
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM- 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~- 231 (479)
|.+++++++++. ++|+||||||...... ...+.+++.+++++|+.|+..+++++.. .+.+ +||++||.
T Consensus 70 ~~~~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g-~iv~isS~~ 148 (265)
T PRK07097 70 DEDGVQAMVSQIEKEVGVIDILVNNAGIIKRIPMLEMSAEDFRQVIDIDLNAPFIVSKAVIPSMIKKGHG-KIINICSMM 148 (265)
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCc-EEEEEcCcc
Confidence 999998888642 5899999999765322 2335566788899999999988877643 3444 89999984
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
+.++. .+...|+.+|++.+.+++.+++++ |++++.++||.|..+...+...
T Consensus 149 ~~~~~-------------------------~~~~~Y~~sKaal~~l~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~- 202 (265)
T PRK07097 149 SELGR-------------------------ETVSAYAAAKGGLKMLTKNIASEYGEANIQCNGIGPGYIATPQTAPLRE- 202 (265)
T ss_pred ccCCC-------------------------CCCccHHHHHHHHHHHHHHHHHHhhhcCceEEEEEeccccccchhhhhh-
Confidence 33322 236789999999999999999885 8999999999998875321000
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
....+. ...+...+.... ....+...+|++.+++.++..... .|+ ++.+.++
T Consensus 203 ------~~~~~~----~~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~~~~g~--~~~~~gg 256 (265)
T PRK07097 203 ------LQADGS----RHPFDQFIIAKT---------PAARWGDPEDLAGPAVFLASDASNFVNGH--ILYVDGG 256 (265)
T ss_pred ------cccccc----chhHHHHHHhcC---------CccCCcCHHHHHHHHHHHhCcccCCCCCC--EEEECCC
Confidence 000000 001111111111 112356789999999999986432 344 6776654
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=167.09 Aligned_cols=177 Identities=18% Similarity=0.161 Sum_probs=131.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++++||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+..+.++.+|++
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l----------------~~~~~~l~~-~~~~~~~~~~Dl~ 99 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGATVVAVARREDLL----------------DAVADRITR-AGGDAMAVPCDLS 99 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHh-cCCcEEEEEccCC
Confidence 45679999999999999999999999999999998864311 111111111 1345788999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccccc---cccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeec
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMI---DRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~---~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS 230 (479)
|.+++.++++.. ++|+||||||......... +.+++...+++|+.|+.++++++. +.+.+ +||++||
T Consensus 100 d~~~v~~~~~~~~~~~g~id~li~~AG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS 178 (293)
T PRK05866 100 DLDAVDALVADVEKRIGGVDILINNAGRSIRRPLAESLDRWHDVERTMVLNYYAPLRLIRGLAPGMLERGDG-HIINVAT 178 (293)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCcchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-EEEEECC
Confidence 999988887732 6899999999754322211 223456789999999988887664 45555 9999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecC
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGV 300 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp 300 (479)
.++++.. ......|+.+|++.+.+++.++.++ |+++++++||.|-.+
T Consensus 179 ~~~~~~~-----------------------~p~~~~Y~asKaal~~l~~~la~e~~~~gI~v~~v~pg~v~T~ 228 (293)
T PRK05866 179 WGVLSEA-----------------------SPLFSVYNASKAALSAVSRVIETEWGDRGVHSTTLYYPLVATP 228 (293)
T ss_pred hhhcCCC-----------------------CCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEEcCcccCc
Confidence 7655321 1225789999999999999988774 899999999987655
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.5e-19 Score=168.62 Aligned_cols=168 Identities=15% Similarity=0.075 Sum_probs=127.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|++|||||+|+||.+++++|+++|++|++++|..... ... ...++.++.+|++|.+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~--------------------~~~---~~~~~~~~~~Dl~~~~ 57 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAAGYEVWATARKAEDV--------------------EAL---AAAGFTAVQLDVNDGA 57 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHH--------------------HHH---HHCCCeEEEeeCCCHH
Confidence 47899999999999999999999999999998754311 111 1124678899999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH---cCCcceEEEeeccccccC
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE---FRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~---~g~~~~~V~~SS~~v~g~ 236 (479)
+++++++.. ++|+||||||...... ...+.+++...+++|+.|+.++++++.. .+.+ +||++||...+.
T Consensus 58 ~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g-~iv~isS~~~~~- 135 (274)
T PRK05693 58 ALARLAEELEAEHGGLDVLINNAGYGAMGPLLDGGVEAMRRQFETNVFAVVGVTRALFPLLRRSRG-LVVNIGSVSGVL- 135 (274)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCC-EEEEECCccccC-
Confidence 988877643 6899999999754322 2234456778899999999999988743 2334 899999843221
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCC
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVR 301 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~ 301 (479)
+......|+.+|.+.+.+++.++.+ +|+++++++||.|..+.
T Consensus 136 -----------------------~~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~ 180 (274)
T PRK05693 136 -----------------------VTPFAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASQF 180 (274)
T ss_pred -----------------------CCCCccHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCcccccc
Confidence 1122578999999999999888776 58999999999997664
|
|
| >PRK12824 acetoacetyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.3e-19 Score=165.61 Aligned_cols=225 Identities=14% Similarity=0.117 Sum_probs=156.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.|++|||||+|+||.+++++|+++|++|+++++..... ..+...... ..+.++.++.+|++|.+
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~---------------~~~~~~~~~-~~~~~~~~~~~D~~~~~ 65 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDC---------------AKDWFEEYG-FTEDQVRLKELDVTDTE 65 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHH---------------HHHHHHHhh-ccCCeEEEEEcCCCCHH
Confidence 36899999999999999999999999999998753210 001111111 11346889999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecccccc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~g 235 (479)
++.++++.. .+|+|||+||..... ....+.+++..++++|+.++.++++++ ++.+.+ +||++||...++
T Consensus 66 ~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~iss~~~~~ 144 (245)
T PRK12824 66 ECAEALAEIEEEEGPVDILVNNAGITRDSVFKRMSHQEWNDVINTNLNSVFNVTQPLFAAMCEQGYG-RIINISSVNGLK 144 (245)
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCe-EEEEECChhhcc
Confidence 888877642 589999999975432 223355667788999999999986554 445555 999999965442
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
. ......|+.+|++.+.+++.++.+ .|+++++++||.+.++.....
T Consensus 145 ~------------------------~~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~~~~------- 193 (245)
T PRK12824 145 G------------------------QFGQTNYSAAKAGMIGFTKALASEGARYGITVNCIAPGYIATPMVEQM------- 193 (245)
T ss_pred C------------------------CCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEEcccCCcchhhc-------
Confidence 1 123568999999999999988765 389999999999988743210
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
............ ....+..++|+++++..++..... .|+ ++++.++
T Consensus 194 ------------~~~~~~~~~~~~---------~~~~~~~~~~va~~~~~l~~~~~~~~~G~--~~~~~~g 241 (245)
T PRK12824 194 ------------GPEVLQSIVNQI---------PMKRLGTPEEIAAAVAFLVSEAAGFITGE--TISINGG 241 (245)
T ss_pred ------------CHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHcCccccCccCc--EEEECCC
Confidence 011111122211 123456789999999888865332 344 8888774
|
|
| >PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=165.49 Aligned_cols=231 Identities=13% Similarity=0.067 Sum_probs=153.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|+++++..... +......+....+.++.++.+|++
T Consensus 5 ~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~D~~ 69 (260)
T PRK08416 5 EMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEE---------------ANKIAEDLEQKYGIKAKAYPLNIL 69 (260)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHH---------------HHHHHHHHHHhcCCceEEEEcCCC
Confidence 35689999999999999999999999999998876532211 111111222222357889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc-------ccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEE
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA-------PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLV 226 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~-------~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V 226 (479)
|+++++++++.. ++|+||||||.... +....+++++...+++|+.+...+.+.+.. .+.+ +||
T Consensus 70 ~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv 148 (260)
T PRK08416 70 EPETYKELFKKIDEDFDRVDFFISNAIISGRAVVGGYTKFMRLKPKGLNNIYTATVNAFVVGAQEAAKRMEKVGGG-SII 148 (260)
T ss_pred CHHHHHHHHHHHHHhcCCccEEEECccccccccccccCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHhhhccCCE-EEE
Confidence 999988887753 58999999986421 112234556777899999988877666543 3334 899
Q ss_pred EeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCC
Q 011707 227 KLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTD 303 (479)
Q Consensus 227 ~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~ 303 (479)
++||..... +......|+.+|++.+.+++.++.++ |++++.+.||.+--+...
T Consensus 149 ~isS~~~~~------------------------~~~~~~~Y~asK~a~~~~~~~la~el~~~gi~v~~v~PG~i~T~~~~ 204 (260)
T PRK08416 149 SLSSTGNLV------------------------YIENYAGHGTSKAAVETMVKYAATELGEKNIRVNAVSGGPIDTDALK 204 (260)
T ss_pred EEecccccc------------------------CCCCcccchhhHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccChhhh
Confidence 999953221 11235689999999999999999885 899999999887544210
Q ss_pred chhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 304 ETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 304 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. +.. ............+ ...+...+|++.+++.++..... .|+ .+.+.++
T Consensus 205 ~----------------~~~-~~~~~~~~~~~~~---------~~r~~~p~~va~~~~~l~~~~~~~~~G~--~i~vdgg 256 (260)
T PRK08416 205 A----------------FTN-YEEVKAKTEELSP---------LNRMGQPEDLAGACLFLCSEKASWLTGQ--TIVVDGG 256 (260)
T ss_pred h----------------ccC-CHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHcChhhhcccCc--EEEEcCC
Confidence 0 000 0011111111111 12367899999999999875433 343 7776553
|
|
| >PRK07069 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.2e-19 Score=165.99 Aligned_cols=175 Identities=14% Similarity=0.074 Sum_probs=127.6
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccC-CCceeEEEcccCChHH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT-GKNIELYIGDICDFEF 166 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d~~~ 166 (479)
+||||||+|+||.++++.|+++|++|++++|..... +.+..+.+.... ...+..+.+|++|+++
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~D~~~~~~ 65 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGAKVFLTDINDAAG---------------LDAFAAEINAAHGEGVAFAAVQDVTDEAQ 65 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcchH---------------HHHHHHHHHhcCCCceEEEEEeecCCHHH
Confidence 389999999999999999999999999998752211 011111111111 1234568899999999
Q ss_pred HHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHH----HHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 167 LSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVI----GTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 167 ~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~----g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
+.++++.. ++|+||||||...... ...+.+++.+++++|+. ++..++.++++.+.+ +||++||...+..
T Consensus 66 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~ii~~ss~~~~~~ 144 (251)
T PRK07069 66 WQALLAQAADAMGGLSVLVNNAGVGSFGAIEQIELDEWRRVMAINVESIFLGCKHALPYLRASQPA-SIVNISSVAAFKA 144 (251)
T ss_pred HHHHHHHHHHHcCCccEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCc-EEEEecChhhccC
Confidence 88877642 5899999999765332 22344566778899998 666777777776666 9999999765532
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-----CCceEEeecCeeecCCC
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-----GIRATDLNQGVVYGVRT 302 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gl~~~ivRp~~v~Gp~~ 302 (479)
......|+.+|.+.+.+++.++.+. +++++.++||.+.+|..
T Consensus 145 ------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~pg~v~t~~~ 191 (251)
T PRK07069 145 ------------------------EPDYTAYNASKAAVASLTKSIALDCARRGLDVRCNSIHPTFIRTGIV 191 (251)
T ss_pred ------------------------CCCCchhHHHHHHHHHHHHHHHHHhcccCCcEEEEEEeecccCCcch
Confidence 1235689999999999999988763 48899999999988853
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-18 Score=163.58 Aligned_cols=228 Identities=13% Similarity=0.084 Sum_probs=155.1
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|++|||||+|+||.++++.|+++|++|++++|..... .+....+.. .+.++.++.+|++|++
T Consensus 1 ~k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~~~~ 63 (252)
T PRK07677 1 EKVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKL----------------EEAKLEIEQ-FPGQVLTVQMDVRNPE 63 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEEecCCCHH
Confidence 57999999999999999999999999999998754311 111111111 1246889999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCc-ccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccccc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSA-PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGEYG 235 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~-~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v~g 235 (479)
+++++++.. ++|+||||||.... +....+.+++..++++|+.|+.++++++.+ .+...+||++||..-+.
T Consensus 64 ~~~~~~~~~~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~ii~isS~~~~~ 143 (252)
T PRK07677 64 DVQKMVEQIDEKFGRIDALINNAAGNFICPAEDLSVNGWNSVIDIVLNGTFYCSQAVGKYWIEKGIKGNIINMVATYAWD 143 (252)
T ss_pred HHHHHHHHHHHHhCCccEEEECCCCCCCCCcccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcCCCEEEEEEcChhhcc
Confidence 988877643 68999999986432 222334556788899999999999998843 23234899999863221
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh----CCceEEeecCeeecCCCCchhhhHhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
+......|+.+|++.+.+++.++.++ |++++.++||.+..+......
T Consensus 144 ------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~gi~v~~v~PG~v~~~~~~~~~----- 194 (252)
T PRK07677 144 ------------------------AGPGVIHSAAAKAGVLAMTRTLAVEWGRKYGIRVNAIAPGPIERTGGADKL----- 194 (252)
T ss_pred ------------------------CCCCCcchHHHHHHHHHHHHHHHHHhCcccCeEEEEEeecccccccccccc-----
Confidence 11234679999999999999988773 799999999998754211000
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
+. -......+....+ ...+...+|+++++..++..... .|+ ++.+.++
T Consensus 195 ---------~~--~~~~~~~~~~~~~---------~~~~~~~~~va~~~~~l~~~~~~~~~g~--~~~~~gg 244 (252)
T PRK07677 195 ---------WE--SEEAAKRTIQSVP---------LGRLGTPEEIAGLAYFLLSDEAAYINGT--CITMDGG 244 (252)
T ss_pred ---------cC--CHHHHHHHhccCC---------CCCCCCHHHHHHHHHHHcCccccccCCC--EEEECCC
Confidence 00 0122222222211 12367889999999888765432 344 7777653
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.9e-18 Score=162.77 Aligned_cols=228 Identities=13% Similarity=0.145 Sum_probs=156.2
Q ss_pred CCCcEEEEEcCC--chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGD--GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|++|||||+ ++||..++++|+++|++|++.+|..+. .+.++ ++....+.++.+|+
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~-----------------~~~~~---~~~~~~~~~~~~Dl 64 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRM-----------------KKSLQ---KLVDEEDLLVECDV 64 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHH-----------------HHHHH---hhccCceeEEeCCC
Confidence 568999999999 799999999999999999998774210 11111 12224678899999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeec
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS 230 (479)
+|+++++++++.. ++|++|||||.... +....+.+++.+.+++|+.++..+++++...- .+.+||++||
T Consensus 65 ~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~iss 144 (252)
T PRK06079 65 ASDESIERAFATIKERVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLTY 144 (252)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEec
Confidence 9999888876542 59999999997532 12233556788899999999999998886531 1238999998
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
..... +......|+.+|++.+.+++.++.++ |++++++.||.|-.+.....
T Consensus 145 ~~~~~------------------------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~vn~i~PG~v~T~~~~~~-- 198 (252)
T PRK06079 145 FGSER------------------------AIPNYNVMGIAKAALESSVRYLARDLGKKGIRVNAISAGAVKTLAVTGI-- 198 (252)
T ss_pred cCccc------------------------cCCcchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccccccccC--
Confidence 53211 11235789999999999999999874 89999999999866531100
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. -...........+ ...+...+|++++++.++......-.++++.+.++
T Consensus 199 -------------~~--~~~~~~~~~~~~p---------~~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg 248 (252)
T PRK06079 199 -------------KG--HKDLLKESDSRTV---------DGVGVTIEEVGNTAAFLLSDLSTGVTGDIIYVDKG 248 (252)
T ss_pred -------------CC--hHHHHHHHHhcCc---------ccCCCCHHHHHHHHHHHhCcccccccccEEEeCCc
Confidence 00 0111222211111 12467889999999999876433222236666553
|
|
| >PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.7e-19 Score=166.17 Aligned_cols=230 Identities=11% Similarity=0.047 Sum_probs=158.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|+++++.... +..+.+... +.++..+.+|++
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~~~~~------------------~~~~~~~~~-~~~~~~~~~Dl~ 67 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGINIVEPT------------------ETIEQVTAL-GRRFLSLTADLR 67 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEecCcchH------------------HHHHHHHhc-CCeEEEEECCCC
Confidence 3568999999999999999999999999999988753211 111122111 346788999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~ 232 (479)
|.+++++++++. ++|+||||||...... ...+++++.+.+++|+.++.++++++... +.+.+||++||..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~D~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~g~iv~isS~~ 147 (253)
T PRK08993 68 KIDGIPALLERAVAEFGHIDILVNNAGLIRREDAIEFSEKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASML 147 (253)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEECchh
Confidence 999988887753 6999999999754322 23345678889999999999999887542 3223899999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+... .....|+.+|++.+.+++.++.+ .|++++.++||.+-.+....-.
T Consensus 148 ~~~~~------------------------~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pG~v~T~~~~~~~--- 200 (253)
T PRK08993 148 SFQGG------------------------IRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLR--- 200 (253)
T ss_pred hccCC------------------------CCCcchHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCcccCcchhhhc---
Confidence 55321 22468999999999999999887 4899999999999765321000
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. ..........-+ ..-+...+|++.+++.++......-.++++.+.++
T Consensus 201 ------------~~--~~~~~~~~~~~p---------~~r~~~p~eva~~~~~l~s~~~~~~~G~~~~~dgg 249 (253)
T PRK08993 201 ------------AD--EQRSAEILDRIP---------AGRWGLPSDLMGPVVFLASSASDYINGYTIAVDGG 249 (253)
T ss_pred ------------cc--hHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 00 000111111111 12367789999999999976544222236665543
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.7e-19 Score=167.18 Aligned_cols=170 Identities=21% Similarity=0.169 Sum_probs=129.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|++|||||+|+||.+++++|+++|++|++++|..... .+... ...+.++.++.+|++|.+
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~---~~~~~~~~~~~~D~~~~~ 61 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGL----------------AALAA---ELGAGNAWTGALDVTDRA 61 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHH----------------HHHHH---HhcCCceEEEEecCCCHH
Confidence 47899999999999999999999999999998754311 01111 111357889999999999
Q ss_pred HHHHHhhhc------CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc-cc
Q 011707 166 FLSESFKSF------EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM-GE 233 (479)
Q Consensus 166 ~~~~~~~~~------~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~-~v 233 (479)
++.++++.. ++|+||||||...... ...+.+++..++++|+.++.++++++.. .+.+ +||++||. ++
T Consensus 62 ~v~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~isS~~~~ 140 (260)
T PRK08267 62 AWDAALADFAAATGGRLDVLFNNAGILRGGPFEDIPLEAHDRVIDINVKGVLNGAHAALPYLKATPGA-RVINTSSASAI 140 (260)
T ss_pred HHHHHHHHHHHHcCCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC-EEEEeCchhhC
Confidence 888877632 5799999999765332 2224456678899999999999988743 3344 89999985 44
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecC
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGV 300 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp 300 (479)
+|.. ....|+.+|++.+.+++.++.+. |+++++++||.+..+
T Consensus 141 ~~~~-------------------------~~~~Y~~sKaa~~~~~~~l~~~~~~~~i~v~~i~pg~~~t~ 185 (260)
T PRK08267 141 YGQP-------------------------GLAVYSATKFAVRGLTEALDLEWRRHGIRVADVMPLFVDTA 185 (260)
T ss_pred cCCC-------------------------CchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCcCCc
Confidence 4432 25789999999999999988763 799999999998655
|
|
| >PRK06198 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-18 Score=165.90 Aligned_cols=236 Identities=17% Similarity=0.106 Sum_probs=161.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCe-EEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYE-VAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+++|+|+||||+|+||.+++++|+++|++ |++++|..... ......+. ..+.++.++.+|++
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~----------------~~~~~~l~-~~~~~~~~~~~D~~ 66 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKG----------------EAQAAELE-ALGAKAVFVQADLS 66 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHH----------------HHHHHHHH-hcCCeEEEEEccCC
Confidence 46889999999999999999999999998 99888753211 11111111 12346788999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~ 232 (479)
+++++.++++.. ++|+||||||...... ...+++++..++++|+.++.++++++.+. +...+||++||..
T Consensus 67 ~~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~~ 146 (260)
T PRK06198 67 DVEDCRRVVAAADEAFGRLDALVNAAGLTDRGTILDTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSMS 146 (260)
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCcc
Confidence 999988887643 5899999999754322 22355566778999999999999887542 2223799999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.++.. .....|+.+|.+.|.+++.++.++ +++++.++||+++++......
T Consensus 147 ~~~~~------------------------~~~~~Y~~sK~a~~~~~~~~a~e~~~~~i~v~~i~pg~~~t~~~~~~~--- 199 (260)
T PRK06198 147 AHGGQ------------------------PFLAAYCASKGALATLTRNAAYALLRNRIRVNGLNIGWMATEGEDRIQ--- 199 (260)
T ss_pred cccCC------------------------CCcchhHHHHHHHHHHHHHHHHHhcccCeEEEEEeeccccCcchhhhh---
Confidence 65421 225789999999999999988765 699999999999988532100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
..+......++...... .....+++++|++++++.++........++++++.++
T Consensus 200 ---------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~~~ 253 (260)
T PRK06198 200 ---------REFHGAPDDWLEKAAAT---------QPFGRLLDPDEVARAVAFLLSDESGLMTGSVIDFDQS 253 (260)
T ss_pred ---------hhccCCChHHHHHHhcc---------CCccCCcCHHHHHHHHHHHcChhhCCccCceEeECCc
Confidence 00000001122221111 1123568999999999999875543222238888764
|
|
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.3e-18 Score=162.62 Aligned_cols=231 Identities=13% Similarity=0.062 Sum_probs=156.7
Q ss_pred CCCCcEEEEEcCCc-hhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc-cCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDG-YCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS-LTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG-~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~D 160 (479)
.+++|++|||||+| .||.++++.|+++|++|+++++..... .+..+.+.. ....++..+.+|
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~D 77 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRL----------------GETADELAAELGLGRVEAVVCD 77 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHH----------------HHHHHHHHHhcCCceEEEEEcc
Confidence 45689999999997 799999999999999999988753311 111111211 112468889999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeec
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGT 230 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS 230 (479)
++++++++++++.. ++|+||||||...... ...+.+++...+++|+.++..+++++.. .+...+||++||
T Consensus 78 l~~~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~g~iv~~ss 157 (262)
T PRK07831 78 VTSEAQVDALIDAAVERLGRLDVLVNNAGLGGQTPVVDMTDDEWSRVLDVTLTGTFRATRAALRYMRARGHGGVIVNNAS 157 (262)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEeCc
Confidence 99999888877642 6899999999643222 2224456778899999999999887753 221238999888
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
...+ . +..+...|+.+|++.+.+++.++.+ +|+++++++||.+..|..+..
T Consensus 158 ~~~~--~----------------------~~~~~~~Y~~sKaal~~~~~~la~e~~~~gI~v~~i~Pg~~~t~~~~~~-- 211 (262)
T PRK07831 158 VLGW--R----------------------AQHGQAHYAAAKAGVMALTRCSALEAAEYGVRINAVAPSIAMHPFLAKV-- 211 (262)
T ss_pred hhhc--C----------------------CCCCCcchHHHHHHHHHHHHHHHHHhCccCeEEEEEeeCCccCcccccc--
Confidence 4322 1 1223578999999999999999987 489999999999988743210
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
........+....+ ..-+...+|++++++.++......-.++++.+.+
T Consensus 212 ----------------~~~~~~~~~~~~~~---------~~r~~~p~~va~~~~~l~s~~~~~itG~~i~v~~ 259 (262)
T PRK07831 212 ----------------TSAELLDELAAREA---------FGRAAEPWEVANVIAFLASDYSSYLTGEVVSVSS 259 (262)
T ss_pred ----------------cCHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHcCchhcCcCCceEEeCC
Confidence 00122222222221 1245678999999999887654321223666554
|
|
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=163.51 Aligned_cols=202 Identities=18% Similarity=0.158 Sum_probs=146.1
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc-cCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS-LTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~d~ 164 (479)
+|++|||||+|+||.+++++|+++|++|++++|...... +....+.. ..+.++.++.+|++|.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~----------------~~~~~~~~~~~~~~~~~~~~D~~~~ 65 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGRDLALCARRTDRLE----------------ELKAELLARYPGIKVAVAALDVNDH 65 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHH----------------HHHHHHHhhCCCceEEEEEcCCCCH
Confidence 678999999999999999999999999999988643211 11111111 1234788999999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc-c
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG-E 233 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~-v 233 (479)
+++.++++.. ++|+||||||...... ...+.+.+...+++|+.++.++++++. +.+.+ +||++||.. +
T Consensus 66 ~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~ 144 (248)
T PRK08251 66 DQVFEVFAEFRDELGGLDRVIVNAGIGKGARLGTGKFWANKATAETNFVAALAQCEAAMEIFREQGSG-HLVLISSVSAV 144 (248)
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcCcCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-eEEEEeccccc
Confidence 9888877643 6999999999754322 122333456678999999999988774 34555 899999953 3
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
++.+ .+...|+.||++.+.+++.++.++ ++++++++||.+.++....
T Consensus 145 ~~~~------------------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~pg~v~t~~~~~------ 194 (248)
T PRK08251 145 RGLP------------------------GVKAAYAASKAGVASLGEGLRAELAKTPIKVSTIEPGYIRSEMNAK------ 194 (248)
T ss_pred cCCC------------------------CCcccHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcCcchhhhc------
Confidence 3321 125789999999999999888764 7999999999997663110
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP 367 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~ 367 (479)
.+. ....+..+|++++++.++++.
T Consensus 195 -----------------------~~~----------~~~~~~~~~~a~~i~~~~~~~ 218 (248)
T PRK08251 195 -----------------------AKS----------TPFMVDTETGVKALVKAIEKE 218 (248)
T ss_pred -----------------------ccc----------CCccCCHHHHHHHHHHHHhcC
Confidence 000 113578999999999999853
|
|
| >PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=164.84 Aligned_cols=237 Identities=12% Similarity=0.003 Sum_probs=156.4
Q ss_pred CCCCcEEEEEcCCc--hhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDG--YCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG--~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.+++|+||||||+| +||.+++++|+++|++|++++|...+... +..... .+......... ..+.++.++.+|
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~---~~~~~~--~~~~~~~~~~~-~~~~~~~~~~~D 75 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTM---PWGMHD--KEPVLLKEEIE-SYGVRCEHMEID 75 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCcccccc---ccccch--hhHHHHHHHHH-hcCCeEEEEECC
Confidence 34678999999995 79999999999999999999876321100 000000 00000011111 123468899999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeec
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGT 230 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS 230 (479)
+++.+++.++++.. .+|+||||||...... ...+++++...+++|+.|+.++++++... +.+ +||++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~g~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~ss 154 (256)
T PRK12748 76 LSQPYAPNRVFYAVSERLGDPSILINNAAYSTHTRLEELTAEQLDKHYAVNVRATMLLSSAFAKQYDGKAGG-RIINLTS 154 (256)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhcCCe-EEEEECC
Confidence 99999887777642 5899999999754322 22344556778999999999999988643 233 8999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
...++. ......|+.+|++.+.+++.++.++ |++++.++||.+..+....
T Consensus 155 ~~~~~~------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~i~Pg~~~t~~~~~--- 207 (256)
T PRK12748 155 GQSLGP------------------------MPDELAYAATKGAIEAFTKSLAPELAEKGITVNAVNPGPTDTGWITE--- 207 (256)
T ss_pred ccccCC------------------------CCCchHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEEeCcccCCCCCh---
Confidence 755432 1235789999999999999988764 8999999999887653211
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.......... ....+...+|+++++..++......-.++++++.++
T Consensus 208 -------------------~~~~~~~~~~---------~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~d~g 253 (256)
T PRK12748 208 -------------------ELKHHLVPKF---------PQGRVGEPVDAARLIAFLVSEEAKWITGQVIHSEGG 253 (256)
T ss_pred -------------------hHHHhhhccC---------CCCCCcCHHHHHHHHHHHhCcccccccCCEEEecCC
Confidence 1111111110 111245679999999888875433212238888653
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=164.59 Aligned_cols=226 Identities=15% Similarity=0.062 Sum_probs=152.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++++||||||+|+||.+++++|+++|++|++++|..... .+..+. . ...++.+|++|
T Consensus 5 ~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~~~~----------------~~~~~~---~---~~~~~~~D~~~ 62 (255)
T PRK06057 5 LAGRVAVITGGGSGIGLATARRLAAEGATVVVGDIDPEAG----------------KAAADE---V---GGLFVPTDVTD 62 (255)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH----------------HHHHHH---c---CCcEEEeeCCC
Confidence 5689999999999999999999999999999998754311 000111 1 12578899999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcc---cccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAP---YSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM 231 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~---~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~ 231 (479)
.++++++++.. ++|+||||||..... ....+.+.+...+++|+.|+.++++.+. +.+.+ ++|++||.
T Consensus 63 ~~~~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~g-~iv~~sS~ 141 (255)
T PRK06057 63 EDAVNALFDTAAETYGSVDIAFNNAGISPPEDDSILNTGLDAWQRVQDVNLTSVYLCCKAALPHMVRQGKG-SIINTASF 141 (255)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCCcccCCHHHHHHHHHHhcHHHHHHHHHHHHHHHHhCCc-EEEEEcch
Confidence 99998888743 689999999975321 1122334567789999999988887764 34444 89998884
Q ss_pred -ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 232 -GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 232 -~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
+++|.. .+...|+.+|++.+.+++.++.++ |+++++++||.+.+|.....
T Consensus 142 ~~~~g~~------------------------~~~~~Y~~sKaal~~~~~~l~~~~~~~gi~v~~i~pg~v~t~~~~~~-- 195 (255)
T PRK06057 142 VAVMGSA------------------------TSQISYTASKGGVLAMSRELGVQFARQGIRVNALCPGPVNTPLLQEL-- 195 (255)
T ss_pred hhccCCC------------------------CCCcchHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCCcCCchhhhh--
Confidence 455432 124679999999888888776653 79999999999988753210
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
+....... .+.... .+ ...+..++|+++++..++......-....+.+.++
T Consensus 196 -------------~~~~~~~~-~~~~~~-----~~----~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~~g 246 (255)
T PRK06057 196 -------------FAKDPERA-ARRLVH-----VP----MGRFAEPEEIAAAVAFLASDDASFITASTFLVDGG 246 (255)
T ss_pred -------------ccCCHHHH-HHHHhc-----CC----CCCCcCHHHHHHHHHHHhCccccCccCcEEEECCC
Confidence 00000111 111111 01 12578999999999888865433211236666553
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-18 Score=164.64 Aligned_cols=231 Identities=14% Similarity=0.053 Sum_probs=158.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++|
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~~ 67 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGG----------------EETVALIRE-AGGEALFVACDVTR 67 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCceEEEEcCCCC
Confidence 5689999999999999999999999999999998864321 111112211 23468899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
.+++.++++.. ++|+||||||..... ....+.+++...+++|+.++.++++++. +.+.+ +||++||..
T Consensus 68 ~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~ii~~sS~~ 146 (253)
T PRK06172 68 DAEVKALVEQTIAAYGRLDYAFNNAGIEIEQGRLAEGSEAEFDAIMGVNVKGVWLCMKYQIPLMLAQGGG-AIVNTASVA 146 (253)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEECchh
Confidence 99888877643 589999999974322 2233445677889999999988776543 34444 899999966
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.++. ......|+.+|++.+.+++.++.++ |++++++.||.|-.+.....
T Consensus 147 ~~~~------------------------~~~~~~Y~~sKaa~~~~~~~la~e~~~~~i~v~~i~PG~v~t~~~~~~---- 198 (253)
T PRK06172 147 GLGA------------------------APKMSIYAASKHAVIGLTKSAAIEYAKKGIRVNAVCPAVIDTDMFRRA---- 198 (253)
T ss_pred hccC------------------------CCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhh----
Confidence 5532 2236789999999999999999875 79999999998865532110
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
+.. ............ ....+...+|+++.++.++......-.++++++.++
T Consensus 199 -----------~~~-~~~~~~~~~~~~---------~~~~~~~p~~ia~~~~~l~~~~~~~~~G~~i~~dgg 249 (253)
T PRK06172 199 -----------YEA-DPRKAEFAAAMH---------PVGRIGKVEEVASAVLYLCSDGASFTTGHALMVDGG 249 (253)
T ss_pred -----------ccc-ChHHHHHHhccC---------CCCCccCHHHHHHHHHHHhCccccCcCCcEEEECCC
Confidence 000 011111111111 112356889999999999876533222237787764
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-19 Score=172.29 Aligned_cols=184 Identities=17% Similarity=0.129 Sum_probs=132.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+....+ .++.++.+|++|
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~R~~~~~----------------~~~~~~l-----~~v~~~~~Dl~d 82 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPARRPDVA----------------REALAGI-----DGVEVVMLDLAD 82 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHh-----hhCeEEEccCCC
Confidence 4678999999999999999999999999999998754311 1111111 247889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEY 234 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~ 234 (479)
.++++++++.. ++|+||||||...... ..+.++++..+++|+.|+.++++++ ++.+.. +||++||.+..
T Consensus 83 ~~~v~~~~~~~~~~~~~iD~li~nAg~~~~~~-~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~-~iV~vSS~~~~ 160 (315)
T PRK06196 83 LESVRAFAERFLDSGRRIDILINNAGVMACPE-TRVGDGWEAQFATNHLGHFALVNLLWPALAAGAGA-RVVALSSAGHR 160 (315)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCCCCCCCC-ccCCccHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-eEEEECCHHhc
Confidence 99988877642 6999999999754322 2344556778999999987777655 344444 99999996433
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCC
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRT 302 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~ 302 (479)
... ..++... . ..+..+...|+.||++.+.+++.+++++ |+++++++||.|.++..
T Consensus 161 ~~~---~~~~~~~-------~--~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~gi~v~~v~PG~v~t~~~ 219 (315)
T PRK06196 161 RSP---IRWDDPH-------F--TRGYDKWLAYGQSKTANALFAVHLDKLGKDQGVRAFSVHPGGILTPLQ 219 (315)
T ss_pred cCC---CCccccC-------c--cCCCChHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeeCCcccCCcc
Confidence 211 1111000 0 0123346789999999999999888763 79999999999998853
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=164.39 Aligned_cols=212 Identities=17% Similarity=0.157 Sum_probs=148.8
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+||||||+|+||.+++++|+++|++|++++|..... .+....+.. .+.++.++.+|++|.++
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~D~~~~~~ 63 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWAREGWRLALADVNEEGG----------------EETLKLLRE-AGGDGFYQRCDVRDYSQ 63 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCceEEEEccCCCHHH
Confidence 5799999999999999999999999999988754321 111111111 23468889999999998
Q ss_pred HHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccccccC
Q 011707 167 LSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 167 ~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~g~ 236 (479)
+.++++.. ++|+||||||...... ...+.+++..++++|+.++.++.+.+ ++.+.+ +||++||...+.
T Consensus 64 ~~~~~~~i~~~~~~id~lI~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~vsS~~~~~- 141 (270)
T PRK05650 64 LTALAQACEEKWGGIDVIVNNAGVASGGFFEELSLEDWDWQIAINLMGVVKGCKAFLPLFKRQKSG-RIVNIASMAGLM- 141 (270)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCC-EEEEECChhhcC-
Confidence 88877632 6999999999765432 22244566778899999988877664 455555 999999965442
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
+......|+.+|++.+.+.+.++.+. |+++++++||.+..+......
T Consensus 142 -----------------------~~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~------- 191 (270)
T PRK05650 142 -----------------------QGPAMSSYNVAKAGVVALSETLLVELADDEIGVHVVCPSFFQTNLLDSFR------- 191 (270)
T ss_pred -----------------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCccccCcccccc-------
Confidence 22336789999999999999888874 899999999999877532100
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN 366 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~ 366 (479)
.. .......+.... ...+++++|+|+.++.++++
T Consensus 192 -----~~-~~~~~~~~~~~~-------------~~~~~~~~~vA~~i~~~l~~ 225 (270)
T PRK05650 192 -----GP-NPAMKAQVGKLL-------------EKSPITAADIADYIYQQVAK 225 (270)
T ss_pred -----cC-chhHHHHHHHHh-------------hcCCCCHHHHHHHHHHHHhC
Confidence 00 000111111111 12357899999999999985
|
|
| >PRK07102 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=163.54 Aligned_cols=173 Identities=16% Similarity=0.143 Sum_probs=129.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+|+||||+|+||.+++++|+++|++|++++|...... +..+......+.++.++++|++|++
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~----------------~~~~~~~~~~~~~~~~~~~Dl~~~~ 64 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAAGARLYLAARDVERLE----------------RLADDLRARGAVAVSTHELDILDTA 64 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHH----------------HHHHHHHHhcCCeEEEEecCCCChH
Confidence 478999999999999999999999999999998653211 1111111122357899999999999
Q ss_pred HHHHHhhhc--CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc-cccCC
Q 011707 166 FLSESFKSF--EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG-EYGTP 237 (479)
Q Consensus 166 ~~~~~~~~~--~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~-v~g~~ 237 (479)
+++++++.. .+|+|||+||...... ...+.+++...+++|+.++.++++++.. .+.+ +||++||.. .++
T Consensus 65 ~~~~~~~~~~~~~d~vv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~-- 141 (243)
T PRK07102 65 SHAAFLDSLPALPDIVLIAVGTLGDQAACEADPALALREFRTNFEGPIALLTLLANRFEARGSG-TIVGISSVAGDRG-- 141 (243)
T ss_pred HHHHHHHHHhhcCCEEEECCcCCCCcccccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCC-EEEEEecccccCC--
Confidence 988887743 5799999999754322 2234445567889999999999988754 3444 899999853 221
Q ss_pred CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecC
Q 011707 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGV 300 (479)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp 300 (479)
......|+.+|++.+.+++.++.+ .|+++++++||.++++
T Consensus 142 -----------------------~~~~~~Y~~sK~a~~~~~~~l~~el~~~gi~v~~v~pg~v~t~ 184 (243)
T PRK07102 142 -----------------------RASNYVYGSAKAALTAFLSGLRNRLFKSGVHVLTVKPGFVRTP 184 (243)
T ss_pred -----------------------CCCCcccHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccCh
Confidence 122467999999999999988765 3899999999999876
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=169.68 Aligned_cols=212 Identities=14% Similarity=0.080 Sum_probs=151.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.... .+..+.++.+|++|
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l----------------~~~~~~~~~-~g~~~~~~~~Dv~d 67 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEAL----------------QAVAEECRA-LGAEVLVVPTDVTD 67 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHh-cCCcEEEEEeeCCC
Confidence 4678999999999999999999999999999998754321 111111111 23467888999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
.++++++++.. ++|++|||||....... ..+.+++.+++++|+.|+.++.+++. +.+.+ +||++||...
T Consensus 68 ~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~~~~~~~g-~iV~isS~~~ 146 (330)
T PRK06139 68 ADQVKALATQAASFGGRIDVWVNNVGVGAVGRFEETPIEAHEQVIQTNLIGYMRDAHAALPIFKKQGHG-IFINMISLGG 146 (330)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCC-EEEEEcChhh
Confidence 99998887532 68999999997554322 23445677889999999999887763 34444 8999998654
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh----CCceEEeecCeeecCCCCchhhhH
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
+. +......|+.||++.+.+++.++.+. |++++.+.||.|..|.....
T Consensus 147 ~~------------------------~~p~~~~Y~asKaal~~~~~sL~~El~~~~gI~V~~v~Pg~v~T~~~~~~---- 198 (330)
T PRK06139 147 FA------------------------AQPYAAAYSASKFGLRGFSEALRGELADHPDIHVCDVYPAFMDTPGFRHG---- 198 (330)
T ss_pred cC------------------------CCCCchhHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecCCccCcccccc----
Confidence 42 11235789999999999988888763 79999999999988753210
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA 368 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~ 368 (479)
..+ .+.. ......+++.+|+|++++.+++++.
T Consensus 199 ----------------~~~-----~~~~------~~~~~~~~~pe~vA~~il~~~~~~~ 230 (330)
T PRK06139 199 ----------------ANY-----TGRR------LTPPPPVYDPRRVAKAVVRLADRPR 230 (330)
T ss_pred ----------------ccc-----cccc------ccCCCCCCCHHHHHHHHHHHHhCCC
Confidence 000 0100 0111235789999999999998653
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.2e-19 Score=166.55 Aligned_cols=208 Identities=18% Similarity=0.094 Sum_probs=143.9
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
++||||||+|+||.++++.|+++|++|++++|.... .+... ..++..+.+|++|.++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~~~--------------------~~~~~---~~~~~~~~~D~~~~~~ 59 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAACRKPDD--------------------VARMN---SLGFTGILLDLDDPES 59 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH--------------------hHHHH---hCCCeEEEeecCCHHH
Confidence 689999999999999999999999999998875321 11111 1247788999999988
Q ss_pred HHHHhhh------cCCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHH----HHHHHHcCCcceEEEeecccccc
Q 011707 167 LSESFKS------FEPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNV----LFAMKEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 167 ~~~~~~~------~~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~l----l~~a~~~g~~~~~V~~SS~~v~g 235 (479)
+.++++. ..+|.|||+||...... ...+.+++...+++|+.|+.++ ++.+++.+.+ +||++||...+.
T Consensus 60 ~~~~~~~i~~~~~~~~~~ii~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~-~iv~~ss~~~~~ 138 (256)
T PRK08017 60 VERAADEVIALTDNRLYGLFNNAGFGVYGPLSTISRQQMEQQFSTNFFGTHQLTMLLLPAMLPHGEG-RIVMTSSVMGLI 138 (256)
T ss_pred HHHHHHHHHHhcCCCCeEEEECCCCCCccchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCC-EEEEEcCccccc
Confidence 7766543 25799999999643221 1224445667899999998886 5555666666 899999853221
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
+......|+.+|+..|.+.+.++.+ .+++++++|||.+..+..
T Consensus 139 ------------------------~~~~~~~Y~~sK~~~~~~~~~l~~~~~~~~i~v~~v~pg~~~t~~~---------- 184 (256)
T PRK08017 139 ------------------------STPGRGAYAASKYALEAWSDALRMELRHSGIKVSLIEPGPIRTRFT---------- 184 (256)
T ss_pred ------------------------CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEeCCCcccchh----------
Confidence 1123578999999999988766543 589999999987754421
Q ss_pred cccCCCCcccchHHHHHHHHhcCC-CeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGH-PLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
..+..+. .......+...+.+++++|+++++..++++...
T Consensus 185 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~~~~~~~~~~~~ 225 (256)
T PRK08017 185 -----------------DNVNQTQSDKPVENPGIAARFTLGPEAVVPKLRHALESPKP 225 (256)
T ss_pred -----------------hcccchhhccchhhhHHHhhcCCCHHHHHHHHHHHHhCCCC
Confidence 1111111 111112223345689999999999999987654
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-18 Score=160.73 Aligned_cols=217 Identities=12% Similarity=0.061 Sum_probs=150.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|++|||||+|+||.+++++|+++|++|++++|..... .+.++ . .++.++.+|++|.+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~---~---~~~~~~~~D~~~~~ 59 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQPVIVSYRTHYPA----------------IDGLR---Q---AGAQCIQADFSTNA 59 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchhH----------------HHHHH---H---cCCEEEEcCCCCHH
Confidence 57999999999999999999999999999998754310 01111 1 24678899999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHHH----cC--CcceEEEeecccc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FR--QECHLVKLGTMGE 233 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g--~~~~~V~~SS~~v 233 (479)
+++++++.. ++|++|||||..... ....+.+++.+++++|+.++..+.+.+.. .+ .+ +||++||...
T Consensus 60 ~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~~~g-~iv~~ss~~~ 138 (236)
T PRK06483 60 GIMAFIDELKQHTDGLRAIIHNASDWLAEKPGAPLADVLARMMQIHVNAPYLLNLALEDLLRGHGHAAS-DIIHITDYVV 138 (236)
T ss_pred HHHHHHHHHHhhCCCccEEEECCccccCCCcCccCHHHHHHHHHHcchHHHHHHHHHHHHHHhCCCCCc-eEEEEcchhh
Confidence 888877653 489999999975332 22224566788999999999988776654 22 23 8999988532
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCCCCchhhhHhh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
.. +......|+.+|++.+.+++.++.++ ++++++|+||.+.-+..+.
T Consensus 139 ~~------------------------~~~~~~~Y~asKaal~~l~~~~a~e~~~~irvn~v~Pg~~~~~~~~~------- 187 (236)
T PRK06483 139 EK------------------------GSDKHIAYAASKAALDNMTLSFAAKLAPEVKVNSIAPALILFNEGDD------- 187 (236)
T ss_pred cc------------------------CCCCCccHHHHHHHHHHHHHHHHHHHCCCcEEEEEccCceecCCCCC-------
Confidence 11 11235789999999999999999986 5999999999874321110
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
...........++ .-+...+|+++++..++......|+ ++.+.++
T Consensus 188 --------------~~~~~~~~~~~~~---------~~~~~~~~va~~~~~l~~~~~~~G~--~i~vdgg 232 (236)
T PRK06483 188 --------------AAYRQKALAKSLL---------KIEPGEEEIIDLVDYLLTSCYVTGR--SLPVDGG 232 (236)
T ss_pred --------------HHHHHHHhccCcc---------ccCCCHHHHHHHHHHHhcCCCcCCc--EEEeCcc
Confidence 0111122222111 1235689999999999875444555 7777654
|
|
| >TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=184.81 Aligned_cols=243 Identities=15% Similarity=0.101 Sum_probs=159.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc-cCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS-LTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl 161 (479)
++++|+||||||+|+||.+++++|+++|++|+++++...... +....+.. .....+..+.+|+
T Consensus 411 ~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vvi~~r~~~~~~----------------~~~~~l~~~~~~~~~~~v~~Dv 474 (676)
T TIGR02632 411 TLARRVAFVTGGAGGIGRETARRLAAEGAHVVLADLNLEAAE----------------AVAAEINGQFGAGRAVALKMDV 474 (676)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCCHHHHH----------------HHHHHHHhhcCCCcEEEEECCC
Confidence 457899999999999999999999999999999988543210 11111111 1123577899999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~ 231 (479)
+|.+++.++++.. ++|+||||||...... .....+++...+++|+.+...+++.+. +.+.+.+||++||.
T Consensus 475 td~~~v~~a~~~i~~~~g~iDilV~nAG~~~~~~~~~~~~e~~~~~~~vN~~g~~~l~~~al~~m~~~~~~g~IV~iSS~ 554 (676)
T TIGR02632 475 TDEQAVKAAFADVALAYGGVDIVVNNAGIATSSPFEETTLQEWQLNLDILATGYFLVAREAFRQMREQGLGGNIVFIASK 554 (676)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCh
Confidence 9999998888753 6999999999754322 223455677889999999888765553 33333489999995
Q ss_pred c-cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeee-cCCCCchh
Q 011707 232 G-EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVY-GVRTDETA 306 (479)
Q Consensus 232 ~-v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~-Gp~~~~~~ 306 (479)
. +++. .....|+.+|++.+.+++.++.+. |++++.++|+.|+ |++.....
T Consensus 555 ~a~~~~-------------------------~~~~aY~aSKaA~~~l~r~lA~el~~~gIrVn~V~Pg~V~~~s~~~~~~ 609 (676)
T TIGR02632 555 NAVYAG-------------------------KNASAYSAAKAAEAHLARCLAAEGGTYGIRVNTVNPDAVLQGSGIWDGE 609 (676)
T ss_pred hhcCCC-------------------------CCCHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEECCceecCccccccc
Confidence 3 3332 236799999999999999998874 7999999999887 43321100
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
. ...+....++- ...+ .. .+........+++.+|+|++++.++......-.+.++++.++
T Consensus 610 ~---~~~~~~~~~~~---~~~~-~~--------~~~~r~~l~r~v~peDVA~av~~L~s~~~~~~TG~~i~vDGG 669 (676)
T TIGR02632 610 W---REERAAAYGIP---ADEL-EE--------HYAKRTLLKRHIFPADIAEAVFFLASSKSEKTTGCIITVDGG 669 (676)
T ss_pred c---hhhhhhcccCC---hHHH-HH--------HHHhcCCcCCCcCHHHHHHHHHHHhCCcccCCcCcEEEECCC
Confidence 0 00000000000 0000 00 011112334578999999999998865433212238888775
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=163.09 Aligned_cols=178 Identities=15% Similarity=0.182 Sum_probs=133.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+....+.. ...++.++.+|+++
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~D~~~ 69 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGAKVVLASRRVERL----------------KELRAEIEA-EGGAAHVVSLDVTD 69 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEEecCCC
Confidence 5689999999999999999999999999999998754311 111111111 12468899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHHc----CC-------cceEE
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQ-------ECHLV 226 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~-------~~~~V 226 (479)
.+++.++++.. ++|+||||||....... ..+.+++..++++|+.++.++++++... .. ..++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv 149 (258)
T PRK06949 70 YQSIKAAVAHAETEAGTIDILVNNSGVSTTQKLVDVTPADFDFVFDTNTRGAFFVAQEVAKRMIARAKGAGNTKPGGRII 149 (258)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhcchhhHHHHHHHHHHHHhcCCcCCCCCCCeEEE
Confidence 99988887643 58999999997543221 2234456778999999999999877531 11 13899
Q ss_pred EeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCC
Q 011707 227 KLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRT 302 (479)
Q Consensus 227 ~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~ 302 (479)
++||...+. +......|+.+|++.+.+++.++.++ |+++++++||.|+++..
T Consensus 150 ~~sS~~~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~v~pG~v~t~~~ 204 (258)
T PRK06949 150 NIASVAGLR------------------------VLPQIGLYCMSKAAVVHMTRAMALEWGRHGINVNAICPGYIDTEIN 204 (258)
T ss_pred EECcccccC------------------------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeeCCCcCCcc
Confidence 999965442 11235789999999999999988774 89999999999998863
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-18 Score=166.39 Aligned_cols=218 Identities=13% Similarity=0.087 Sum_probs=152.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++++||||||+|+||.++++.|+++|++|++++|..... .+..+.+. .+..+..+.+|++
T Consensus 6 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l----------------~~~~~~l~--~~~~~~~~~~Dv~ 67 (296)
T PRK05872 6 SLAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAEL----------------AALAAELG--GDDRVLTVVADVT 67 (296)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHhc--CCCcEEEEEecCC
Confidence 35689999999999999999999999999999998754311 11111111 1235666779999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeecccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTMGE 233 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~~v 233 (479)
|.+++++++++. ++|+||||||...... ...+++++.+++++|+.|+.++++++... +.+ +||++||...
T Consensus 68 d~~~v~~~~~~~~~~~g~id~vI~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~g-~iv~isS~~~ 146 (296)
T PRK05872 68 DLAAMQAAAEEAVERFGGIDVVVANAGIASGGSVAQVDPDAFRRVIDVNLLGVFHTVRATLPALIERRG-YVLQVSSLAA 146 (296)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCcCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-EEEEEeCHhh
Confidence 999888877642 6899999999764322 23355677888999999999999888542 233 8999999654
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +......|+.+|++.+.+++.++.+ .|++++++.||.+..+......
T Consensus 147 ~~------------------------~~~~~~~Y~asKaal~~~~~~l~~e~~~~gi~v~~v~Pg~v~T~~~~~~~---- 198 (296)
T PRK05872 147 FA------------------------AAPGMAAYCASKAGVEAFANALRLEVAHHGVTVGSAYLSWIDTDLVRDAD---- 198 (296)
T ss_pred cC------------------------CCCCchHHHHHHHHHHHHHHHHHHHHHHHCcEEEEEecCcccchhhhhcc----
Confidence 42 1123578999999999999988765 4899999999998766321100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP 367 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~ 367 (479)
.. ......+....+. ....++..+|++++++.++...
T Consensus 199 -----------~~--~~~~~~~~~~~~~-------p~~~~~~~~~va~~i~~~~~~~ 235 (296)
T PRK05872 199 -----------AD--LPAFRELRARLPW-------PLRRTTSVEKCAAAFVDGIERR 235 (296)
T ss_pred -----------cc--chhHHHHHhhCCC-------cccCCCCHHHHHHHHHHHHhcC
Confidence 00 0111112111111 1224578999999999999864
|
|
| >PRK06125 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5e-18 Score=161.87 Aligned_cols=176 Identities=15% Similarity=0.053 Sum_probs=132.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.++++.|+++|++|++++|..... .+..+.+....+.++.++.+|++|
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~D~~~ 68 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADAL----------------EALAADLRAAHGVDVAVHALDLSS 68 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHH----------------HHHHHHHHhhcCCceEEEEecCCC
Confidence 4689999999999999999999999999999998754311 111122222223568889999999
Q ss_pred hHHHHHHhhhc-CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccccccCC
Q 011707 164 FEFLSESFKSF-EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEYGTP 237 (479)
Q Consensus 164 ~~~~~~~~~~~-~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~g~~ 237 (479)
.+++.++++.. ++|++|||||..... ....+++++...+++|+.++.++++++. +.+.+ ++|++||..-.
T Consensus 69 ~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~iss~~~~--- 144 (259)
T PRK06125 69 PEAREQLAAEAGDIDILVNNAGAIPGGGLDDVDDAAWRAGWELKVFGYIDLTRLAYPRMKARGSG-VIVNVIGAAGE--- 144 (259)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc-EEEEecCcccc---
Confidence 99999988754 599999999975322 2233556778889999999999988773 33334 89999885321
Q ss_pred CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecC
Q 011707 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGV 300 (479)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp 300 (479)
.+......|+.+|.+.+.+++.++.+ .|++++.+.||.+..+
T Consensus 145 ---------------------~~~~~~~~y~ask~al~~~~~~la~e~~~~gi~v~~i~PG~v~t~ 189 (259)
T PRK06125 145 ---------------------NPDADYICGSAGNAALMAFTRALGGKSLDDGVRVVGVNPGPVATD 189 (259)
T ss_pred ---------------------CCCCCchHhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccH
Confidence 12233567999999999999998876 3899999999988765
|
|
| >PRK08226 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.2e-18 Score=162.72 Aligned_cols=234 Identities=14% Similarity=0.094 Sum_probs=157.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+.++++|||||+|+||.+++++|+++|++|++++|.... .+....... .+.++.++.+|+++
T Consensus 4 ~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~-----------------~~~~~~~~~-~~~~~~~~~~Dl~~ 65 (263)
T PRK08226 4 LTGKTALITGALQGIGEGIARVFARHGANLILLDISPEI-----------------EKLADELCG-RGHRCTAVVADVRD 65 (263)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHH-----------------HHHHHHHHH-hCCceEEEECCCCC
Confidence 457899999999999999999999999999999875321 011111111 13467889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
.++++++++.. ++|+||||||....... ..+.+++.+.+++|+.++.++++++.. .+.+ +||++||...
T Consensus 66 ~~~v~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~isS~~~ 144 (263)
T PRK08226 66 PASVAAAIKRAKEKEGRIDILVNNAGVCRLGSFLDMSDEDRDFHIDINIKGVWNVTKAVLPEMIARKDG-RIVMMSSVTG 144 (263)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc-EEEEECcHHh
Confidence 99988887753 68999999997543322 224445677899999999999988754 2334 8999998532
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
... +......|+.+|.+.+.+++.++.++ |++++.++||.+.++....
T Consensus 145 ~~~-----------------------~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~i~v~~i~pg~v~t~~~~~------ 195 (263)
T PRK08226 145 DMV-----------------------ADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAES------ 195 (263)
T ss_pred ccc-----------------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccCHHHHh------
Confidence 100 11235689999999999999998875 7999999999998874211
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
...... ......++..+..+.+ ...+...+|++++++.++..... .|+ ++-+.++
T Consensus 196 ~~~~~~-----~~~~~~~~~~~~~~~p---------~~~~~~~~~va~~~~~l~~~~~~~~~g~--~i~~dgg 252 (263)
T PRK08226 196 IARQSN-----PEDPESVLTEMAKAIP---------LRRLADPLEVGELAAFLASDESSYLTGT--QNVIDGG 252 (263)
T ss_pred hhhhcc-----CCCcHHHHHHHhccCC---------CCCCCCHHHHHHHHHHHcCchhcCCcCc--eEeECCC
Confidence 000000 0001122333332222 22356889999999888764322 344 6666554
|
|
| >PRK08936 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.1e-18 Score=160.60 Aligned_cols=232 Identities=14% Similarity=0.038 Sum_probs=154.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.++++.|+++|+.|+++.+..... .......+.. .+.++.++.+|++|
T Consensus 5 ~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~---------------~~~~~~~l~~-~~~~~~~~~~Dl~~ 68 (261)
T PRK08936 5 LEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEE---------------ANDVAEEIKK-AGGEAIAVKGDVTV 68 (261)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHH---------------HHHHHHHHHH-cCCeEEEEEecCCC
Confidence 5789999999999999999999999999998876643211 0111111111 13467789999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v 233 (479)
.+++.++++.. ++|+||||||....... ..+++++.+.+++|+.++.++++.+ ++.+...+||++||...
T Consensus 69 ~~~i~~~~~~~~~~~g~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~g~iv~~sS~~~ 148 (261)
T PRK08936 69 ESDVVNLIQTAVKEFGTLDVMINNAGIENAVPSHEMSLEDWNKVINTNLTGAFLGSREAIKYFVEHDIKGNIINMSSVHE 148 (261)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEEccccc
Confidence 99888877642 58999999997543322 2345567788999999887665544 44443348999999532
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +..+...|+.+|++.+.+++.++.++ |+++++++||.|..+......
T Consensus 149 ~~------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~pg~v~t~~~~~~~---- 200 (261)
T PRK08936 149 QI------------------------PWPLFVHYAASKGGVKLMTETLAMEYAPKGIRVNNIGPGAINTPINAEKF---- 200 (261)
T ss_pred cC------------------------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEEECcCCCCcccccc----
Confidence 21 22346789999999999999888765 899999999999877532110
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. ...........+ ...+...+|+++++..++......-.+..+.+.++
T Consensus 201 -----------~~--~~~~~~~~~~~~---------~~~~~~~~~va~~~~~l~s~~~~~~~G~~i~~d~g 249 (261)
T PRK08936 201 -----------AD--PKQRADVESMIP---------MGYIGKPEEIAAVAAWLASSEASYVTGITLFADGG 249 (261)
T ss_pred -----------CC--HHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHcCcccCCccCcEEEECCC
Confidence 00 011111111111 12466789999999998875443211225665543
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=181.70 Aligned_cols=230 Identities=15% Similarity=0.096 Sum_probs=161.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
...+|++|||||+|+||.+++++|+++|++|++++|..... +...+..+.++..+.+|++
T Consensus 266 ~~~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~--------------------~~~~~~~~~~~~~~~~D~~ 325 (520)
T PRK06484 266 AESPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGA--------------------KKLAEALGDEHLSVQADIT 325 (520)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--------------------HHHHHHhCCceeEEEccCC
Confidence 44789999999999999999999999999999998754311 1111111345677899999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHHc--CCcceEEEeecccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF--RQECHLVKLGTMGE 233 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--g~~~~~V~~SS~~v 233 (479)
|+++++++++.. .+|+||||||.... +....+++++..++++|+.|+.++++++... +.+ +||++||...
T Consensus 326 ~~~~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g-~iv~isS~~~ 404 (520)
T PRK06484 326 DEAAVESAFAQIQARWGRLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGG-VIVNLGSIAS 404 (520)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCC-EEEEECchhh
Confidence 999988887642 58999999997532 2223455677889999999999999988653 223 8999999643
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +..+...|+.+|++.+.+++.++.++ |++++++.||.|..+......
T Consensus 405 ~~------------------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~---- 456 (520)
T PRK06484 405 LL------------------------ALPPRNAYCASKAAVTMLSRSLACEWAPAGIRVNTVAPGYIETPAVLALK---- 456 (520)
T ss_pred cC------------------------CCCCCchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCccCchhhhhc----
Confidence 32 22336789999999999999998875 799999999999876421100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQ 382 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~ 382 (479)
.. -......+.+..+ ...+..++|++++++.++......-.++++.+.++.
T Consensus 457 -----------~~-~~~~~~~~~~~~~---------~~~~~~~~dia~~~~~l~s~~~~~~~G~~i~vdgg~ 507 (520)
T PRK06484 457 -----------AS-GRADFDSIRRRIP---------LGRLGDPEEVAEAIAFLASPAASYVNGATLTVDGGW 507 (520)
T ss_pred -----------cc-cHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCccccCccCcEEEECCCc
Confidence 00 0001111211111 123578999999999998754332222388887653
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=169.26 Aligned_cols=190 Identities=13% Similarity=0.108 Sum_probs=130.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc-cCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS-LTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl 161 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. ..+.++.++.+|+
T Consensus 13 ~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~~Dl 76 (306)
T PRK06197 13 DQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVRNLDKG----------------KAAAARITAATPGADVTLQELDL 76 (306)
T ss_pred cCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHHhCCCCceEEEECCC
Confidence 35789999999999999999999999999999998754321 111111111 1134688899999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHH----HHHHHHHHcCCcceEEEeeccc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTL----NVLFAMKEFRQECHLVKLGTMG 232 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~----~ll~~a~~~g~~~~~V~~SS~~ 232 (479)
+|.+++++++++. ++|+||||||...... ....+++...+++|+.|+. .+++.+++.+.+ +||++||.+
T Consensus 77 ~d~~~v~~~~~~~~~~~~~iD~li~nAg~~~~~~-~~~~~~~~~~~~vN~~g~~~l~~~ll~~l~~~~~~-~iV~vSS~~ 154 (306)
T PRK06197 77 TSLASVRAAADALRAAYPRIDLLINNAGVMYTPK-QTTADGFELQFGTNHLGHFALTGLLLDRLLPVPGS-RVVTVSSGG 154 (306)
T ss_pred CCHHHHHHHHHHHHhhCCCCCEEEECCccccCCC-ccCCCCcchhhhhhhHHHHHHHHHHHHHHhhCCCC-EEEEECCHH
Confidence 9999988887643 5899999999754332 2334456778899999944 555555555555 999999975
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEE--eecCeeecCC
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATD--LNQGVVYGVR 301 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~i--vRp~~v~Gp~ 301 (479)
.+.....+..+.. ...+..+...|+.||++.+.+++.+++++ |+++++ +.||.|..+.
T Consensus 155 ~~~~~~~~~~~~~-----------~~~~~~~~~~Y~~SK~a~~~~~~~la~~l~~~~i~v~~v~~~PG~v~T~~ 217 (306)
T PRK06197 155 HRIRAAIHFDDLQ-----------WERRYNRVAAYGQSKLANLLFTYELQRRLAAAGATTIAVAAHPGVSNTEL 217 (306)
T ss_pred HhccCCCCccccC-----------cccCCCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCCcccCcc
Confidence 4321111111110 00123456789999999999999998875 566554 4799886653
|
|
| >PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=9e-18 Score=163.95 Aligned_cols=173 Identities=16% Similarity=0.090 Sum_probs=127.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|+++++..... ..+..+.+.. .+.++.++.+|++
T Consensus 9 ~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~---------------~~~~~~~i~~-~g~~~~~~~~Dv~ 72 (306)
T PRK07792 9 DLSGKVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALD---------------ASDVLDEIRA-AGAKAVAVAGDIS 72 (306)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhH---------------HHHHHHHHHh-cCCeEEEEeCCCC
Confidence 46789999999999999999999999999999988643211 1111111211 2357889999999
Q ss_pred ChHHHHHHhhh----cCCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc--------C--CcceEEE
Q 011707 163 DFEFLSESFKS----FEPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF--------R--QECHLVK 227 (479)
Q Consensus 163 d~~~~~~~~~~----~~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--------g--~~~~~V~ 227 (479)
|.++++++++. .++|+||||||...... ...+.+++..++++|+.|+.++++++... + ...+||+
T Consensus 73 d~~~~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~vn~~g~~~l~~~~~~~~~~~~~~~~~~~~g~iv~ 152 (306)
T PRK07792 73 QRATADELVATAVGLGGLDIVVNNAGITRDRMLFNMSDEEWDAVIAVHLRGHFLLTRNAAAYWRAKAKAAGGPVYGRIVN 152 (306)
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcccCCCCCcEEEE
Confidence 99988887764 26999999999764322 12234567788999999999999887421 1 1138999
Q ss_pred eeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecC
Q 011707 228 LGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQG 295 (479)
Q Consensus 228 ~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~ 295 (479)
+||...+. +......|+.+|++.+.+++.++.+ +|++++++.|+
T Consensus 153 isS~~~~~------------------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~i~Pg 199 (306)
T PRK07792 153 TSSEAGLV------------------------GPVGQANYGAAKAGITALTLSAARALGRYGVRANAICPR 199 (306)
T ss_pred ECCccccc------------------------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEECCC
Confidence 99854321 1123568999999999999998876 48999999886
|
|
| >PRK08278 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-18 Score=162.18 Aligned_cols=218 Identities=17% Similarity=0.105 Sum_probs=149.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.++++.|+++|++|++++|........ . ..+.+..+.... .+.++.++.+|+++
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~-------~--~~l~~~~~~~~~-~~~~~~~~~~D~~~ 73 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKL-------P--GTIHTAAEEIEA-AGGQALPLVGDVRD 73 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccch-------h--hHHHHHHHHHHh-cCCceEEEEecCCC
Confidence 5678999999999999999999999999999998864321000 0 001111111211 23468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~v 233 (479)
++++.++++.. ++|+||||||....... ..+.+++.+++++|+.|+.++++++... +.+ ++|++||...
T Consensus 74 ~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g-~iv~iss~~~ 152 (273)
T PRK08278 74 EDQVAAAVAKAVERFGGIDICVNNASAINLTGTEDTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENP-HILTLSPPLN 152 (273)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCcCCCCcccCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCC-EEEEECCchh
Confidence 99998887753 69999999997544332 2244567788999999999999998642 233 8999987421
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
. .. ....+...|+.+|++.|.+++.++.++ +++++.+.|+.+...
T Consensus 153 ~--~~--------------------~~~~~~~~Y~~sK~a~~~~~~~la~el~~~~I~v~~i~Pg~~i~t---------- 200 (273)
T PRK08278 153 L--DP--------------------KWFAPHTAYTMAKYGMSLCTLGLAEEFRDDGIAVNALWPRTTIAT---------- 200 (273)
T ss_pred c--cc--------------------cccCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeCCCcccc----------
Confidence 1 00 011346789999999999999999875 799999999843211
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA 368 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~ 368 (479)
.+......+. .....+...+|++++++.++....
T Consensus 201 ----------------~~~~~~~~~~--------~~~~~~~~p~~va~~~~~l~~~~~ 234 (273)
T PRK08278 201 ----------------AAVRNLLGGD--------EAMRRSRTPEIMADAAYEILSRPA 234 (273)
T ss_pred ----------------HHHHhccccc--------ccccccCCHHHHHHHHHHHhcCcc
Confidence 0111111111 112246788999999999987654
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-18 Score=169.23 Aligned_cols=187 Identities=13% Similarity=0.118 Sum_probs=135.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl 161 (479)
.+++|+++||||+|+||.+++++|+++|++|++++|..... .+..+.+... .+.++.++.+|+
T Consensus 11 ~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~----------------~~~~~~l~~~~~~~~v~~~~~Dl 74 (313)
T PRK05854 11 DLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKG----------------EAAVAAIRTAVPDAKLSLRALDL 74 (313)
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHHhCCCCceEEEEecC
Confidence 35789999999999999999999999999999998754321 1112222211 124688999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHH---cCCcceEEEeecccc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKE---FRQECHLVKLGTMGE 233 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~---~g~~~~~V~~SS~~v 233 (479)
+|.++++++++.. ++|++|||||.........+.++++..+++|+.|+..+.+.+.. .+.. +||++||...
T Consensus 75 ~d~~sv~~~~~~~~~~~~~iD~li~nAG~~~~~~~~~t~~~~e~~~~vN~~g~~~l~~~llp~l~~~~~-riv~vsS~~~ 153 (313)
T PRK05854 75 SSLASVAALGEQLRAEGRPIHLLINNAGVMTPPERQTTADGFELQFGTNHLGHFALTAHLLPLLRAGRA-RVTSQSSIAA 153 (313)
T ss_pred CCHHHHHHHHHHHHHhCCCccEEEECCccccCCccccCcccHHHHhhhhhHHHHHHHHHHHHHHHhCCC-CeEEEechhh
Confidence 9999998887643 58999999998654333345566788899999999888877753 2334 8999999643
Q ss_pred -ccCCCC-CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH-----hCCceEEeecCeeecC
Q 011707 234 -YGTPNI-DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA-----WGIRATDLNQGVVYGV 300 (479)
Q Consensus 234 -~g~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~gl~~~ivRp~~v~Gp 300 (479)
++.... +..+. .+..+...|+.||++.+.+++.++++ .|++++.+.||.|..+
T Consensus 154 ~~~~~~~~~~~~~--------------~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~~gI~v~~v~PG~v~T~ 213 (313)
T PRK05854 154 RRGAINWDDLNWE--------------RSYAGMRAYSQSKIAVGLFALELDRRSRAAGWGITSNLAHPGVAPTN 213 (313)
T ss_pred cCCCcCccccccc--------------ccCcchhhhHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEecceeccC
Confidence 332110 11111 12345678999999999999998864 3699999999998654
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.7e-18 Score=163.08 Aligned_cols=173 Identities=18% Similarity=0.184 Sum_probs=128.4
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|++|||||+|+||.+++++|+++|++|+++++..... .+....+.. .+.++.++.+|++|+++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~Dl~~~~~ 63 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETA----------------KETAKEINQ-AGGKAVAYKLDVSDKDQ 63 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCeEEEEEcCCCCHHH
Confidence 5799999999999999999999999999998753211 111111111 13468889999999999
Q ss_pred HHHHhhhc-----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc-cccc
Q 011707 167 LSESFKSF-----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM-GEYG 235 (479)
Q Consensus 167 ~~~~~~~~-----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~-~v~g 235 (479)
+.++++.. .+|+||||||..... ....+.+++..++++|+.++..+++++.. .+.+.+||++||. ++++
T Consensus 64 i~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS~~~~~~ 143 (254)
T TIGR02415 64 VFSAIDQAAEKFGGFDVMVNNAGVAPITPILEITEEELKKVYNVNVKGVLFGIQAAARQFKKQGHGGKIINAASIAGHEG 143 (254)
T ss_pred HHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCeEEEEecchhhcCC
Confidence 88876643 589999999975432 22334556778899999999988776643 2332489999984 3343
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCC
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVR 301 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~ 301 (479)
.+ ..+.|+.+|++.+.+++.++.++ ++++++++||.+..+.
T Consensus 144 ~~-------------------------~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~i~t~~ 187 (254)
T TIGR02415 144 NP-------------------------ILSAYSSTKFAVRGLTQTAAQELAPKGITVNAYCPGIVKTPM 187 (254)
T ss_pred CC-------------------------CCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccChh
Confidence 22 26789999999999999888775 7999999999886553
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-18 Score=159.17 Aligned_cols=206 Identities=17% Similarity=0.147 Sum_probs=148.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+.+++||||||+|+||.+++++|+++|++|++++|..... .+....+... .++.++.+|++|
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~----------------~~~~~~l~~~--~~~~~~~~D~~~ 65 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITARDQKEL----------------EEAAAELNNK--GNVLGLAADVRD 65 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHH----------------HHHHHHHhcc--CcEEEEEccCCC
Confidence 3468999999999999999999999999999998754311 0111111111 468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeeccccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTMGEY 234 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~~v~ 234 (479)
.+++.++++.. ++|+|||+||...... ...+.+++...+++|+.++.++++++.+. +.+ +||++||...+
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~-~iv~~ss~~~~ 144 (237)
T PRK07326 66 EADVQRAVDAIVAAFGGLDVLIANAGVGHFAPVEELTPEEWRLVIDTNLTGAFYTIKAAVPALKRGGG-YIINISSLAGT 144 (237)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHHCCe-EEEEECChhhc
Confidence 99988877643 6999999998754322 12234455678899999999999888642 334 89999986433
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
. +......|+.+|++.+.+++.++.+ .|++++++|||.+..+....
T Consensus 145 ~------------------------~~~~~~~y~~sk~a~~~~~~~~~~~~~~~gi~v~~v~pg~~~t~~~~~------- 193 (237)
T PRK07326 145 N------------------------FFAGGAAYNASKFGLVGFSEAAMLDLRQYGIKVSTIMPGSVATHFNGH------- 193 (237)
T ss_pred c------------------------CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeccccCccccc-------
Confidence 2 1123567999999999999888755 48999999999987663210
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
.+ . ......+..+|++++++.++..+..
T Consensus 194 ------------------------~~----~--~~~~~~~~~~d~a~~~~~~l~~~~~ 221 (237)
T PRK07326 194 ------------------------TP----S--EKDAWKIQPEDIAQLVLDLLKMPPR 221 (237)
T ss_pred ------------------------cc----c--hhhhccCCHHHHHHHHHHHHhCCcc
Confidence 00 0 0001137889999999999987643
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.8e-18 Score=161.06 Aligned_cols=241 Identities=12% Similarity=0.012 Sum_probs=156.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~ 162 (479)
+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+..... .+.++..+.+|++
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~~D~~ 69 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERL----------------ASAEARLREKFPGARLLAARCDVL 69 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHH----------------HHHHHHHHhhCCCceEEEEEecCC
Confidence 5689999999999999999999999999999998854311 1111112111 1236788999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
|.++++++++.. ++|+||||||...... ...+.+++...+++|+.++..+++++. +.+.+ +||++||..
T Consensus 70 ~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~ 148 (265)
T PRK07062 70 DEADVAAFAAAVEARFGGVDMLVNNAGQGRVSTFADTTDDAWRDELELKYFSVINPTRAFLPLLRASAAA-SIVCVNSLL 148 (265)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhccCCc-EEEEecccc
Confidence 999888876642 5899999999754322 223445677889999999888877663 33444 999999964
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.+|++.+.+++.++.++ |+++++++||.|..+.......
T Consensus 149 ~~~------------------------~~~~~~~y~asKaal~~~~~~la~e~~~~gi~v~~i~PG~v~t~~~~~~~~-- 202 (265)
T PRK07062 149 ALQ------------------------PEPHMVATSAARAGLLNLVKSLATELAPKGVRVNSILLGLVESGQWRRRYE-- 202 (265)
T ss_pred ccC------------------------CCCCchHhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccchhhhHHH--
Confidence 332 11235689999999999999888774 7999999999987653211000
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
....... ....+......... .....+...+|++.+++.++......-.++++.+.++
T Consensus 203 ---~~~~~~~----~~~~~~~~~~~~~~-------~p~~r~~~p~~va~~~~~L~s~~~~~~tG~~i~vdgg 260 (265)
T PRK07062 203 ---ARADPGQ----SWEAWTAALARKKG-------IPLGRLGRPDEAARALFFLASPLSSYTTGSHIDVSGG 260 (265)
T ss_pred ---HhhccCC----ChHHHHHHHhhcCC-------CCcCCCCCHHHHHHHHHHHhCchhcccccceEEEcCc
Confidence 0000000 00111111111111 1122467889999999998875332212237777654
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-18 Score=165.30 Aligned_cols=237 Identities=14% Similarity=0.030 Sum_probs=154.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|.... .+......+.++.++.+|++|
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--------------------~~~~~~~~~~~~~~~~~D~~~ 63 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLERSAEK--------------------LASLRQRFGDHVLVVEGDVTS 63 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHH--------------------HHHHHHHhCCcceEEEccCCC
Confidence 468899999999999999999999999999999875431 111111113467889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc--cccccc----cchhhhhhHHHHHHHHHHHHHc--CCcceEEEeec
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS--MIDRSR----AVFTQHNNVIGTLNVLFAMKEF--RQECHLVKLGT 230 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~--~~~~~~----~~~~~~~Nv~g~~~ll~~a~~~--g~~~~~V~~SS 230 (479)
.++++++++.. ++|++|||||....... ..++++ +.+++++|+.++..+++++... ..+.++|++||
T Consensus 64 ~~~~~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~g~iv~~sS 143 (263)
T PRK06200 64 YADNQRAVDQTVDAFGKLDCFVGNAGIWDYNTSLVDIPAETLDTAFDEIFNVNVKGYLLGAKAALPALKASGGSMIFTLS 143 (263)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCcccCCCcccCChhHHHHHHHHHeeeccHhHHHHHHHHHHHHHhcCCEEEEECC
Confidence 99888877643 69999999997532111 112222 5678899999999999888642 11138999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCCCCchhhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
...+. +......|+.+|++.+.+++.++.++ +++++.+.||.|.-+......
T Consensus 144 ~~~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~el~~~Irvn~i~PG~i~t~~~~~~~-- 197 (263)
T PRK06200 144 NSSFY------------------------PGGGGPLYTASKHAVVGLVRQLAYELAPKIRVNGVAPGGTVTDLRGPAS-- 197 (263)
T ss_pred hhhcC------------------------CCCCCchhHHHHHHHHHHHHHHHHHHhcCcEEEEEeCCccccCCcCccc--
Confidence 65442 12235689999999999999999875 599999999998665321100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC-CCCCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP-AQPGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~-~~~g~~~~~ni~~~ 381 (479)
+.. ....+.. ........... ....-+...+|++.+++.++... ...-.++++.+.++
T Consensus 198 --~~~---~~~~~~~-~~~~~~~~~~~---------~p~~r~~~~~eva~~~~fl~s~~~~~~itG~~i~vdgG 256 (263)
T PRK06200 198 --LGQ---GETSISD-SPGLADMIAAI---------TPLQFAPQPEDHTGPYVLLASRRNSRALTGVVINADGG 256 (263)
T ss_pred --cCC---CCccccc-ccchhHHhhcC---------CCCCCCCCHHHHhhhhhheecccccCcccceEEEEcCc
Confidence 000 0000000 00011111111 12234678899999999988754 33212237777554
|
|
| >PRK06947 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=6e-18 Score=160.16 Aligned_cols=226 Identities=16% Similarity=0.179 Sum_probs=151.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+||||||+|+||..+++.|+++|++|+++++..... .......... .+.++.++.+|++|.+
T Consensus 2 ~k~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~Dl~~~~ 65 (248)
T PRK06947 2 RKVVLITGASRGIGRATAVLAAARGWSVGINYARDAAA---------------AEETADAVRA-AGGRACVVAGDVANEA 65 (248)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHH---------------HHHHHHHHHh-cCCcEEEEEeccCCHH
Confidence 57999999999999999999999999998765432210 0011111111 1346889999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHHH-cCC-----cceEEEeeccc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMKE-FRQ-----ECHLVKLGTMG 232 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~-~g~-----~~~~V~~SS~~ 232 (479)
++.++++.. ++|+||||||..... ....+++++...+++|+.++.++++++.+ ... ..+||++||..
T Consensus 66 ~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~ii~~sS~~ 145 (248)
T PRK06947 66 DVIAMFDAVQSAFGRLDALVNNAGIVAPSMPLADMDAARLRRMFDTNVLGAYLCAREAARRLSTDRGGRGGAIVNVSSIA 145 (248)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCccCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCCCcEEEEECchh
Confidence 888777642 599999999975432 22334556677899999999998765433 211 12699999853
Q ss_pred -cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 233 -EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 233 -v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
.++.+ .....|+.+|++.+.+++.+++++ |++++++|||.+..|.....
T Consensus 146 ~~~~~~------------------------~~~~~Y~~sK~~~~~~~~~la~~~~~~~i~v~~i~Pg~v~t~~~~~~--- 198 (248)
T PRK06947 146 SRLGSP------------------------NEYVDYAGSKGAVDTLTLGLAKELGPHGVRVNAVRPGLIETEIHASG--- 198 (248)
T ss_pred hcCCCC------------------------CCCcccHhhHHHHHHHHHHHHHHhhhhCcEEEEEeccCccccccccc---
Confidence 34322 113579999999999999988875 79999999999987742110
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFT 380 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~ 380 (479)
+. ...........+ ..-+..++|+++.++.++.++.. .|+ ++.+.+
T Consensus 199 ----------~~-----~~~~~~~~~~~~---------~~~~~~~e~va~~~~~l~~~~~~~~~G~--~~~~~g 246 (248)
T PRK06947 199 ----------GQ-----PGRAARLGAQTP---------LGRAGEADEVAETIVWLLSDAASYVTGA--LLDVGG 246 (248)
T ss_pred ----------CC-----HHHHHHHhhcCC---------CCCCcCHHHHHHHHHHHcCccccCcCCc--eEeeCC
Confidence 00 011111111111 11236789999999999887643 344 666654
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.9e-18 Score=163.71 Aligned_cols=228 Identities=13% Similarity=0.137 Sum_probs=152.9
Q ss_pred CCCcEEEEEcCC--chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGD--GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|++|||||+ ++||.+++++|+++|++|++.+|..+. .+.++......+.. ..+.+|+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~-----------------~~~~~~~~~~~~~~-~~~~~Dv 64 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEAL-----------------KKRVEPIAQELGSD-YVYELDV 64 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHH-----------------HHHHHHHHHhcCCc-eEEEecC
Confidence 468999999997 799999999999999999998875320 11112221111223 5789999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeec
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS 230 (479)
+|.++++++++.. ++|++|||||.... +....+++++.+++++|+.|+..+.+++... ..+.+||++||
T Consensus 65 ~d~~~v~~~~~~i~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~isS 144 (274)
T PRK08415 65 SKPEHFKSLAESLKKDLGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLSY 144 (274)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEec
Confidence 9999888877643 68999999997431 1223355678889999999999998877642 11238999998
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
.+-. . +......|+.||++.+.+++.++.++ |++++.+.||.|..+.....
T Consensus 145 ~~~~--~----------------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~~-- 198 (274)
T PRK08415 145 LGGV--K----------------------YVPHYNVMGVAKAALESSVRYLAVDLGKKGIRVNAISAGPIKTLAASGI-- 198 (274)
T ss_pred CCCc--c----------------------CCCcchhhhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCccccHHHhcc--
Confidence 5321 1 11225679999999999999999874 79999999999865421100
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.. .... ..... ... ....+...+|++++++.++..... .|+ ++.+.++
T Consensus 199 --------------~~-~~~~-~~~~~-~~~-------pl~r~~~pedva~~v~fL~s~~~~~itG~--~i~vdGG 248 (274)
T PRK08415 199 --------------GD-FRMI-LKWNE-INA-------PLKKNVSIEEVGNSGMYLLSDLSSGVTGE--IHYVDAG 248 (274)
T ss_pred --------------ch-hhHH-hhhhh-hhC-------chhccCCHHHHHHHHHHHhhhhhhccccc--EEEEcCc
Confidence 00 0000 00000 001 112357889999999999875433 344 7776654
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-17 Score=160.19 Aligned_cols=230 Identities=15% Similarity=0.132 Sum_probs=154.1
Q ss_pred CCCcEEEEEcCCc--hhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGDG--YCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGatG--~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|++|||||++ +||.+++++|+++|++|++++|.... .+.++......+ ....+.+|+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~-----------------~~~~~~~~~~~g-~~~~~~~Dv 66 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEAL-----------------GKRVKPLAESLG-SDFVLPCDV 66 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHH-----------------HHHHHHHHHhcC-CceEEeCCC
Confidence 4689999999997 99999999999999999998764211 011111111111 234689999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeec
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS 230 (479)
+|.++++++++.. ++|++|||||.... +....+.+++.+++++|+.++.++++++... ..+.+||++||
T Consensus 67 ~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~m~~~G~Iv~isS 146 (271)
T PRK06505 67 EDIASVDAVFEALEKKWGKLDFVVHAIGFSDKNELKGRYADTTRENFSRTMVISCFSFTEIAKRAAKLMPDGGSMLTLTY 146 (271)
T ss_pred CCHHHHHHHHHHHHHHhCCCCEEEECCccCCCccccCChhhcCHHHHHHHHhhhhhhHHHHHHHHHHhhccCceEEEEcC
Confidence 9999888887643 69999999997532 1223456678889999999999998877542 11138999998
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
..... +......|+.+|++.+.+++.++.++ |++++.|.||.|-.+.....
T Consensus 147 ~~~~~------------------------~~~~~~~Y~asKaAl~~l~r~la~el~~~gIrVn~v~PG~i~T~~~~~~-- 200 (271)
T PRK06505 147 GGSTR------------------------VMPNYNVMGVAKAALEASVRYLAADYGPQGIRVNAISAGPVRTLAGAGI-- 200 (271)
T ss_pred CCccc------------------------cCCccchhhhhHHHHHHHHHHHHHHHhhcCeEEEEEecCCccccccccC--
Confidence 53211 11235689999999999999999885 79999999999876532100
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. ............+ ...+...+|++++++.++......-.++++.+.++
T Consensus 201 --------------~~-~~~~~~~~~~~~p---------~~r~~~peeva~~~~fL~s~~~~~itG~~i~vdgG 250 (271)
T PRK06505 201 --------------GD-ARAIFSYQQRNSP---------LRRTVTIDEVGGSALYLLSDLSSGVTGEIHFVDSG 250 (271)
T ss_pred --------------cc-hHHHHHHHhhcCC---------ccccCCHHHHHHHHHHHhCccccccCceEEeecCC
Confidence 00 0011111111111 12346789999999999875443222237777664
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-18 Score=163.88 Aligned_cols=174 Identities=16% Similarity=0.099 Sum_probs=128.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|.... ++.+....+.++..+.+|++|
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~--------------------~~~l~~~~~~~~~~~~~D~~~ 62 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGARVAVLDKSAAG--------------------LQELEAAHGDAVVGVEGDVRS 62 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHH--------------------HHHHHhhcCCceEEEEeccCC
Confidence 468999999999999999999999999999999875421 111111123468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccccc-ccc-----cccchhhhhhHHHHHHHHHHHHHcC--CcceEEEeec
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYSM-IDR-----SRAVFTQHNNVIGTLNVLFAMKEFR--QECHLVKLGT 230 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~-~~~-----~~~~~~~~~Nv~g~~~ll~~a~~~g--~~~~~V~~SS 230 (479)
.+++.++++.. ++|++|||||........ ..+ +++.+++++|+.++.++++++...- .+.++|++||
T Consensus 63 ~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~g~iv~~sS 142 (262)
T TIGR03325 63 LDDHKEAVARCVAAFGKIDCLIPNAGIWDYSTALVDIPDDRIDEAFDEVFHINVKGYLLAVKAALPALVASRGSVIFTIS 142 (262)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCccCCccccCCchhhhHHHHHhheeecHhHHHHHHHHHHHHhhcCCCEEEEec
Confidence 98888777642 689999999964321111 111 2467889999999999999986531 1137888888
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhC--CceEEeecCeeecCC
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG--IRATDLNQGVVYGVR 301 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--l~~~ivRp~~v~Gp~ 301 (479)
...+. +......|+.+|++.+.+++.++.+++ ++++.+.||.|..+.
T Consensus 143 ~~~~~------------------------~~~~~~~Y~~sKaa~~~l~~~la~e~~~~irvn~i~PG~i~t~~ 191 (262)
T TIGR03325 143 NAGFY------------------------PNGGGPLYTAAKHAVVGLVKELAFELAPYVRVNGVAPGGMSSDL 191 (262)
T ss_pred cceec------------------------CCCCCchhHHHHHHHHHHHHHHHHhhccCeEEEEEecCCCcCCC
Confidence 54321 112356899999999999999999863 899999999987664
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >TIGR02685 pter_reduc_Leis pteridine reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=160.07 Aligned_cols=227 Identities=12% Similarity=0.038 Sum_probs=146.7
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
++++||||+|+||.+++++|+++|++|+++++..... +.+..+.+....+.++.++.+|++|.++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~G~~V~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~~Dv~d~~~ 66 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQEGYRVVLHYHRSAAA---------------ASTLAAELNARRPNSAVTCQADLSNSAT 66 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhCCCeEEEEcCCcHHH---------------HHHHHHHHHhccCCceEEEEccCCCchh
Confidence 5799999999999999999999999999876542211 1111222222223456778999999875
Q ss_pred H----HHHhhh----c-CCCEEEEcccccCcccccc-cc-----------cccchhhhhhHHHHHHHHHHHHHcC-----
Q 011707 167 L----SESFKS----F-EPDAVVHFGEQRSAPYSMI-DR-----------SRAVFTQHNNVIGTLNVLFAMKEFR----- 220 (479)
Q Consensus 167 ~----~~~~~~----~-~~D~Vih~A~~~~~~~~~~-~~-----------~~~~~~~~~Nv~g~~~ll~~a~~~g----- 220 (479)
+ +++++. . ++|+||||||......... +. .++..++++|+.++..+++++....
T Consensus 67 ~~~~~~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~ 146 (267)
T TIGR02685 67 LFSRCEAIIDACFRAFGRCDVLVNNASAFYPTPLLRGDAGEGVGDKKSLEVQVAELFGSNAIAPYFLIKAFAQRQAGTRA 146 (267)
T ss_pred hHHHHHHHHHHHHHccCCceEEEECCccCCCCcccccccccccccchhhHHHHHHHHHhhhHHHHHHHHHHHHHhhhccc
Confidence 4 333322 1 6999999999754322111 11 1255779999999999998764321
Q ss_pred ----CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEee
Q 011707 221 ----QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLN 293 (479)
Q Consensus 221 ----~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivR 293 (479)
....+|++||.... .+..+...|+.||++.+.+++.++.+ .|+++++++
T Consensus 147 ~~~~~~~~iv~~~s~~~~------------------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~ 202 (267)
T TIGR02685 147 EQRSTNLSIVNLCDAMTD------------------------QPLLGFTMYTMAKHALEGLTRSAALELAPLQIRVNGVA 202 (267)
T ss_pred ccCCCCeEEEEehhhhcc------------------------CCCcccchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEe
Confidence 11267887774321 12234678999999999999999887 489999999
Q ss_pred cCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCc
Q 011707 294 QGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEF 373 (479)
Q Consensus 294 p~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~ 373 (479)
||.+..|.+.+ ...........+ + ...+...+|++.+++.++......-.+
T Consensus 203 PG~~~~~~~~~---------------------~~~~~~~~~~~~--~------~~~~~~~~~va~~~~~l~~~~~~~~~G 253 (267)
T TIGR02685 203 PGLSLLPDAMP---------------------FEVQEDYRRKVP--L------GQREASAEQIADVVIFLVSPKAKYITG 253 (267)
T ss_pred cCCccCccccc---------------------hhHHHHHHHhCC--C------CcCCCCHHHHHHHHHHHhCcccCCccc
Confidence 99987663321 011111111111 1 012468899999999998765332222
Q ss_pred eEEEeCCC
Q 011707 374 RVFNQFTE 381 (479)
Q Consensus 374 ~~~ni~~~ 381 (479)
+.+.+.++
T Consensus 254 ~~~~v~gg 261 (267)
T TIGR02685 254 TCIKVDGG 261 (267)
T ss_pred ceEEECCc
Confidence 37777653
|
Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family. |
| >PRK08703 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.1e-17 Score=157.45 Aligned_cols=206 Identities=14% Similarity=0.078 Sum_probs=143.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+....+.......+.++.+|+++
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~D~~~ 67 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGATVILVARHQKKL----------------EKVYDAIVEAGHPEPFAIRFDLMS 67 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCChHHH----------------HHHHHHHHHcCCCCcceEEeeecc
Confidence 4678999999999999999999999999999998864311 111111111122356778899975
Q ss_pred --hHHHHHHhh----h--cCCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEee
Q 011707 164 --FEFLSESFK----S--FEPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLG 229 (479)
Q Consensus 164 --~~~~~~~~~----~--~~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~S 229 (479)
.+++.++++ . ..+|+||||||.... +....+.+++...+++|+.|+.++++++.+ .+.+ ++|++|
T Consensus 68 ~~~~~~~~~~~~i~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~~s 146 (239)
T PRK08703 68 AEEKEFEQFAATIAEATQGKLDGIVHCAGYFYALSPLDFQTVAEWVNQYRINTVAPMGLTRALFPLLKQSPDA-SVIFVG 146 (239)
T ss_pred cchHHHHHHHHHHHHHhCCCCCEEEEeccccccCCCccccCHHHHHHHHHHhhhHHHHHHHHHHHHHHhCCCC-EEEEEe
Confidence 334444332 1 268999999996432 222334456677899999999999888744 2334 899999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh----CCceEEeecCeeecCCCCch
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gl~~~ivRp~~v~Gp~~~~~ 305 (479)
|.... .+......|+.+|++.+.+++.++.++ ++++++++||.|++|....
T Consensus 147 s~~~~------------------------~~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~i~v~~v~pG~v~t~~~~~- 201 (239)
T PRK08703 147 ESHGE------------------------TPKAYWGGFGASKAALNYLCKVAADEWERFGNLRANVLVPGPINSPQRIK- 201 (239)
T ss_pred ccccc------------------------cCCCCccchHHhHHHHHHHHHHHHHHhccCCCeEEEEEecCcccCccccc-
Confidence 84321 122235689999999999999998875 5999999999999884211
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN 366 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~ 366 (479)
...+ .....+...+|++.++..++..
T Consensus 202 --------------------------~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 227 (239)
T PRK08703 202 --------------------------SHPG---------EAKSERKSYGDVLPAFVWWASA 227 (239)
T ss_pred --------------------------cCCC---------CCccccCCHHHHHHHHHHHhCc
Confidence 0000 1112456889999999999974
|
|
| >TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=157.17 Aligned_cols=226 Identities=13% Similarity=0.080 Sum_probs=151.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|++|||||+|+||.+++++|+++|++|+++.+..... ..+...... ..+.++.++.+|++|+++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~---------------~~~~~~~~~-~~~~~~~~~~~D~~~~~~ 64 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEER---------------AEAWLQEQG-ALGFDFRVVEGDVSSFES 64 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHH---------------HHHHHHHHH-hhCCceEEEEecCCCHHH
Confidence 5899999999999999999999999999887722110 001111111 113468899999999998
Q ss_pred HHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccccccC
Q 011707 167 LSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 167 ~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~g~ 236 (479)
+.++++.. .+|+||||||...... ...+.+++...+++|+.++..+++.+ ++.+.+ +||++||.....
T Consensus 65 ~~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~iss~~~~~- 142 (242)
T TIGR01829 65 CKAAVAKVEAELGPIDVLVNNAGITRDATFKKMTYEQWSAVIDTNLNSVFNVTQPVIDGMRERGWG-RIINISSVNGQK- 142 (242)
T ss_pred HHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEcchhhcC-
Confidence 88877642 5899999999754321 22244456778899999988866554 445555 899999853221
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
+......|+.+|.+.+.+++.+++++ |+++++++||.+.++....
T Consensus 143 -----------------------~~~~~~~y~~sk~a~~~~~~~la~~~~~~~i~v~~i~pg~~~t~~~~~--------- 190 (242)
T TIGR01829 143 -----------------------GQFGQTNYSAAKAGMIGFTKALAQEGATKGVTVNTISPGYIATDMVMA--------- 190 (242)
T ss_pred -----------------------CCCCcchhHHHHHHHHHHHHHHHHHhhhhCeEEEEEeeCCCcCccccc---------
Confidence 11235789999999999999887763 8999999999998875321
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
....++.......+ ...+...+|+++++..++..+...-.++++.+.++
T Consensus 191 ----------~~~~~~~~~~~~~~---------~~~~~~~~~~a~~~~~l~~~~~~~~~G~~~~~~gg 239 (242)
T TIGR01829 191 ----------MREDVLNSIVAQIP---------VGRLGRPEEIAAAVAFLASEEAGYITGATLSINGG 239 (242)
T ss_pred ----------cchHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHcCchhcCccCCEEEecCC
Confidence 11122222222222 12345678999998887765433222238887764
|
(R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families. |
| >PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.8e-18 Score=163.37 Aligned_cols=165 Identities=15% Similarity=0.120 Sum_probs=129.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.++++.|+++|++|+++++..... ...++.++.+|++
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~~~~~~~~--------------------------~~~~~~~~~~D~~ 59 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNADIHGGDG--------------------------QHENYQFVPTDVS 59 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCcccc--------------------------ccCceEEEEccCC
Confidence 45689999999999999999999999999999988754311 0136778999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc----------ccccccccchhhhhhHHHHHHHHHHHHHc----CCcc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY----------SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQEC 223 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~----------~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~ 223 (479)
|+++++++++.. .+|+||||||...... ...+.+++.+++++|+.++.++++++... +.+
T Consensus 60 ~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g- 138 (266)
T PRK06171 60 SAEEVNHTVAEIIEKFGRIDGLVNNAGINIPRLLVDEKDPAGKYELNEAAFDKMFNINQKGVFLMSQAVARQMVKQHDG- 138 (266)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCcccCCccccccccccccccCCHHHHHHHHhhhchhHHHHHHHHHHHHHhcCCc-
Confidence 999998887643 6899999999643211 12345567788999999999999888643 334
Q ss_pred eEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeee
Q 011707 224 HLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVY 298 (479)
Q Consensus 224 ~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~ 298 (479)
+||++||...+. +......|+.+|++.+.+++.++.++ |+++++++||.+.
T Consensus 139 ~iv~isS~~~~~------------------------~~~~~~~Y~~sK~a~~~l~~~la~e~~~~gi~v~~v~pG~~~ 192 (266)
T PRK06171 139 VIVNMSSEAGLE------------------------GSEGQSCYAATKAALNSFTRSWAKELGKHNIRVVGVAPGILE 192 (266)
T ss_pred EEEEEccccccC------------------------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeccccc
Confidence 899999964331 11235789999999999999998874 8999999999884
|
|
| >KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.9e-18 Score=160.31 Aligned_cols=174 Identities=21% Similarity=0.176 Sum_probs=127.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCC-ceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGK-NIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~Dl 161 (479)
..++|+|+||||+.+||.++|.+|+++|.+++.+.+..+.. ....+.+.+.... ++.++++|+
T Consensus 9 ~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl----------------~~v~~~l~~~~~~~~v~~~~~Dv 72 (282)
T KOG1205|consen 9 RLAGKVVLITGASSGIGEALAYELAKRGAKLVLVARRARRL----------------ERVAEELRKLGSLEKVLVLQLDV 72 (282)
T ss_pred HhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhH----------------HHHHHHHHHhCCcCccEEEeCcc
Confidence 45799999999999999999999999999988888765421 1122333333333 599999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccccc-ccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPYSM-IDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~-~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~ 231 (479)
+|.+++.+.++.. ++|++|||||+....... .+..+...++++|+.|+..+.+++ ++.+.+ +||.+||.
T Consensus 73 s~~~~~~~~~~~~~~~fg~vDvLVNNAG~~~~~~~~~~~~~~~~~~mdtN~~G~V~~Tk~alp~m~~r~~G-hIVvisSi 151 (282)
T KOG1205|consen 73 SDEESVKKFVEWAIRHFGRVDVLVNNAGISLVGFLEDTDIEDVRNVMDTNVFGTVYLTKAALPSMKKRNDG-HIVVISSI 151 (282)
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEecCccccccccccCcHHHHHHHhhhhchhhHHHHHHHHHHhhhcCCC-eEEEEecc
Confidence 9999998776432 799999999987733322 244456668999999988888777 344544 99999995
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceE----EeecCee
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRAT----DLNQGVV 297 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~----ivRp~~v 297 (479)
. |.. +......|++||++.+.+...+..|..-..+ ++-||.|
T Consensus 152 a--G~~----------------------~~P~~~~Y~ASK~Al~~f~etLR~El~~~~~~i~i~V~PG~V 197 (282)
T KOG1205|consen 152 A--GKM----------------------PLPFRSIYSASKHALEGFFETLRQELIPLGTIIIILVSPGPI 197 (282)
T ss_pred c--ccc----------------------CCCcccccchHHHHHHHHHHHHHHHhhccCceEEEEEecCce
Confidence 3 221 1122458999999999999999888632222 3666665
|
|
| >PRK06953 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-17 Score=155.14 Aligned_cols=207 Identities=18% Similarity=0.150 Sum_probs=148.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
++++|||||+|+||++++++|+++|++|+++++.... .+... ..++.++.+|+++.+
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~~~~--------------------~~~~~---~~~~~~~~~D~~~~~ 57 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRADGWRVIATARDAAA--------------------LAALQ---ALGAEALALDVADPA 57 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhCCCEEEEEECCHHH--------------------HHHHH---hccceEEEecCCCHH
Confidence 4689999999999999999999999999999875331 11111 124568899999999
Q ss_pred HHHHHhhhc---CCCEEEEcccccCccc---ccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeecc-cccc
Q 011707 166 FLSESFKSF---EPDAVVHFGEQRSAPY---SMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTM-GEYG 235 (479)
Q Consensus 166 ~~~~~~~~~---~~D~Vih~A~~~~~~~---~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~-~v~g 235 (479)
.+++++... ++|+|||++|...... ...+.+++...+++|+.++.++++++... ..+ +||++||. ++++
T Consensus 58 ~v~~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~g-~iv~isS~~~~~~ 136 (222)
T PRK06953 58 SVAGLAWKLDGEALDAAVYVAGVYGPRTEGVEPITREDFDAVMHTNVLGPMQLLPILLPLVEAAGG-VLAVLSSRMGSIG 136 (222)
T ss_pred HHHHHHHHhcCCCCCEEEECCCcccCCCCCcccCCHHHHHHHHhhhhhhHHHHHHHHHHhhhccCC-eEEEEcCcccccc
Confidence 988875432 5899999999753221 12245567888999999999999988652 223 78999884 4454
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-CCceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-GIRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
... ..+...|+.+|...+.+++.++.++ +++++.++||.+.-+...
T Consensus 137 ~~~----------------------~~~~~~Y~~sK~a~~~~~~~~~~~~~~i~v~~v~Pg~i~t~~~~----------- 183 (222)
T PRK06953 137 DAT----------------------GTTGWLYRASKAALNDALRAASLQARHATCIALHPGWVRTDMGG----------- 183 (222)
T ss_pred ccc----------------------CCCccccHHhHHHHHHHHHHHhhhccCcEEEEECCCeeecCCCC-----------
Confidence 221 1122469999999999999988775 789999999988665210
Q ss_pred cCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
+ ...+..++.+..+..++......+..+.|...++
T Consensus 184 ----------------------------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (222)
T PRK06953 184 ----------------------------A----QAALDPAQSVAGMRRVIAQATRRDNGRFFQYDGV 218 (222)
T ss_pred ----------------------------C----CCCCCHHHHHHHHHHHHHhcCcccCceEEeeCCc
Confidence 0 1235778888888888776544444456655544
|
|
| >KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=6e-18 Score=145.08 Aligned_cols=225 Identities=15% Similarity=0.098 Sum_probs=161.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCC-CceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTG-KNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~Dl~ 162 (479)
.+.+.++||||+.+||++++..|++.|++|.+.|+..... .+....+.+ .+-..+.+|+.
T Consensus 12 ~~sk~~~vtGg~sGIGrAia~~la~~Garv~v~dl~~~~A-------------------~ata~~L~g~~~h~aF~~DVS 72 (256)
T KOG1200|consen 12 LMSKVAAVTGGSSGIGRAIAQLLAKKGARVAVADLDSAAA-------------------EATAGDLGGYGDHSAFSCDVS 72 (256)
T ss_pred HhcceeEEecCCchHHHHHHHHHHhcCcEEEEeecchhhH-------------------HHHHhhcCCCCccceeeeccC
Confidence 3467899999999999999999999999999988754421 111122222 35667899999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccccc-cccccchhhhhhHHHHHHHHHHHHHc-----CCcceEEEeec-
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMI-DRSRAVFTQHNNVIGTLNVLFAMKEF-----RQECHLVKLGT- 230 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~-~~~~~~~~~~~Nv~g~~~ll~~a~~~-----g~~~~~V~~SS- 230 (479)
++.++...+++. .+++++||||+.....-.. ..++|+.++++|+.|++.+.+++.+. +.+.+||++||
T Consensus 73 ~a~~v~~~l~e~~k~~g~psvlVncAGItrD~~Llrmkq~qwd~vi~vNL~gvfl~tqaa~r~~~~~~~~~~sIiNvsSI 152 (256)
T KOG1200|consen 73 KAHDVQNTLEEMEKSLGTPSVLVNCAGITRDGLLLRMKQEQWDSVIAVNLTGVFLVTQAAVRAMVMNQQQGLSIINVSSI 152 (256)
T ss_pred cHHHHHHHHHHHHHhcCCCcEEEEcCccccccceeeccHHHHHHHHHhhchhhHHHHHHHHHHHHHhcCCCceEEeehhh
Confidence 998887766644 6999999999976433322 44578899999999999999988654 11238999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
.+-.|+.. ++.|+++|.-.--+.+.++++ .+|+++.+-||.|--|...
T Consensus 153 VGkiGN~G-------------------------QtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI~tpMT~---- 203 (256)
T KOG1200|consen 153 VGKIGNFG-------------------------QTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFIATPMTE---- 203 (256)
T ss_pred hccccccc-------------------------chhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccccChhhh----
Confidence 34444432 688999998777777766666 3899999999999888642
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
.+.+..+..+...-|+.- +-..+|+|..++.+.......-.+..+.+.+
T Consensus 204 ---------------~mp~~v~~ki~~~iPmgr---------~G~~EevA~~V~fLAS~~ssYiTG~t~evtG 252 (256)
T KOG1200|consen 204 ---------------AMPPKVLDKILGMIPMGR---------LGEAEEVANLVLFLASDASSYITGTTLEVTG 252 (256)
T ss_pred ---------------hcCHHHHHHHHccCCccc---------cCCHHHHHHHHHHHhccccccccceeEEEec
Confidence 233556666666555433 3456889999988886554433334777665
|
|
| >PRK07791 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=159.62 Aligned_cols=233 Identities=12% Similarity=0.079 Sum_probs=153.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+++||.+++++|+++|++|+++++..+.. ... .....+.+..+.+.. .+.++.++.+|++|
T Consensus 4 l~~k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~-~~~------~~~~~~~~~~~~l~~-~~~~~~~~~~Dv~~ 75 (286)
T PRK07791 4 LDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLD-GSA------SGGSAAQAVVDEIVA-AGGEAVANGDDIAD 75 (286)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCcccc-ccc------cchhHHHHHHHHHHh-cCCceEEEeCCCCC
Confidence 4689999999999999999999999999999988653100 000 000011111222211 13467889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHHH----cC-----CcceEEEe
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FR-----QECHLVKL 228 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g-----~~~~~V~~ 228 (479)
.+++.++++.. ++|++|||||..... ....+.+++.+++++|+.|+..+++++.. .+ ...+||++
T Consensus 76 ~~~v~~~~~~~~~~~g~id~lv~nAG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~Iv~i 155 (286)
T PRK07791 76 WDGAANLVDAAVETFGGLDVLVNNAGILRDRMIANMSEEEWDAVIAVHLKGHFATLRHAAAYWRAESKAGRAVDARIINT 155 (286)
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccCCCCCcEEEEe
Confidence 98888777542 689999999975432 22345567888999999999999887742 11 11389999
Q ss_pred eccc-cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCc
Q 011707 229 GTMG-EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDE 304 (479)
Q Consensus 229 SS~~-v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~ 304 (479)
||.. ..+. .....|+.+|++.+.+++.++.+ .|++++.|.|| +.-+..
T Consensus 156 sS~~~~~~~-------------------------~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~Pg-~~T~~~-- 207 (286)
T PRK07791 156 SSGAGLQGS-------------------------VGQGNYSAAKAGIAALTLVAAAELGRYGVTVNAIAPA-ARTRMT-- 207 (286)
T ss_pred CchhhCcCC-------------------------CCchhhHHHHHHHHHHHHHHHHHHHHhCeEEEEECCC-CCCCcc--
Confidence 9843 2222 23578999999999999998887 48999999997 422110
Q ss_pred hhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 305 TAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
...........+ .....+...+|++++++.++..... .|+ ++.+.++.
T Consensus 208 ---------------------~~~~~~~~~~~~-------~~~~~~~~pedva~~~~~L~s~~~~~itG~--~i~vdgG~ 257 (286)
T PRK07791 208 ---------------------ETVFAEMMAKPE-------EGEFDAMAPENVSPLVVWLGSAESRDVTGK--VFEVEGGK 257 (286)
T ss_pred ---------------------hhhHHHHHhcCc-------ccccCCCCHHHHHHHHHHHhCchhcCCCCc--EEEEcCCc
Confidence 011111111111 1111356799999999998875433 444 77776654
|
|
| >TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-17 Score=155.36 Aligned_cols=219 Identities=15% Similarity=0.114 Sum_probs=150.7
Q ss_pred EEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHHH
Q 011707 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLS 168 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~~ 168 (479)
||||||+|+||.++++.|+++|++|+++++..... ..+..+.+.. .+.++.++.+|++|.+++.
T Consensus 1 vlItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~---------------~~~~~~~l~~-~~~~~~~~~~Dl~~~~~~~ 64 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAADGFEICVHYHSGRSD---------------AESVVSAIQA-QGGNARLLQFDVADRVACR 64 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHH---------------HHHHHHHHHH-cCCeEEEEEccCCCHHHHH
Confidence 68999999999999999999999999887653211 0111111211 1346889999999999888
Q ss_pred HHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH-----HcCCcceEEEeecc-ccccC
Q 011707 169 ESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK-----EFRQECHLVKLGTM-GEYGT 236 (479)
Q Consensus 169 ~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~-----~~g~~~~~V~~SS~-~v~g~ 236 (479)
++++.. .+|++|||||...... ...+.+++..++++|+.++.++++++. +.+.+ +||++||. ++++.
T Consensus 65 ~~~~~~~~~~~~i~~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-~iv~vsS~~~~~~~ 143 (239)
T TIGR01831 65 TLLEADIAEHGAYYGVVLNAGITRDAAFPALSEEDWDIVIHTNLDGFYNVIHPCTMPMIRARQGG-RIITLASVSGVMGN 143 (239)
T ss_pred HHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCe-EEEEEcchhhccCC
Confidence 877642 5899999999754322 223455677889999999999988762 23334 89999994 44432
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
+ ....|+.+|++.+.+++.++.++ |++++.++||.+.++....
T Consensus 144 ~-------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~--------- 189 (239)
T TIGR01831 144 R-------------------------GQVNYSAAKAGLIGATKALAVELAKRKITVNCIAPGLIDTEMLAE--------- 189 (239)
T ss_pred C-------------------------CCcchHHHHHHHHHHHHHHHHHHhHhCeEEEEEEEccCccccchh---------
Confidence 2 25689999999999999888764 8999999999998775321
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFT 380 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~ 380 (479)
+...........+ ...+...+|++++++.++..... .|. +..+.+
T Consensus 190 -----------~~~~~~~~~~~~~---------~~~~~~~~~va~~~~~l~~~~~~~~~g~--~~~~~g 236 (239)
T TIGR01831 190 -----------VEHDLDEALKTVP---------MNRMGQPAEVASLAGFLMSDGASYVTRQ--VISVNG 236 (239)
T ss_pred -----------hhHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHcCchhcCccCC--EEEecC
Confidence 0111111211111 12356789999999999875433 333 555544
|
This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found. |
| >PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.5e-17 Score=157.33 Aligned_cols=177 Identities=15% Similarity=0.096 Sum_probs=127.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|++.|++|++++|..... .+..+.+......++.++.+|++
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~d~~ 72 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLGRTEEKL----------------EAVYDEIEAAGGPQPAIIPLDLL 72 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCCHHHH----------------HHHHHHHHhcCCCCceEEEeccc
Confidence 45789999999999999999999999999999999864311 11111222222346777888886
Q ss_pred --ChHHHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEee
Q 011707 163 --DFEFLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLG 229 (479)
Q Consensus 163 --d~~~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~S 229 (479)
+.+++.++++.. ++|+||||||..... ....+.+++...+++|+.|+.++++++. +.+.+ +||++|
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~l~~~~~~-~iv~~s 151 (247)
T PRK08945 73 TATPQNYQQLADTIEEQFGRLDGVLHNAGLLGELGPMEQQDPEVWQDVMQVNVNATFMLTQALLPLLLKSPAA-SLVFTS 151 (247)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhCCCC-EEEEEc
Confidence 555555544322 689999999975432 2233445567789999999999988774 34555 899999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecC
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGV 300 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp 300 (479)
|..... +......|+.+|++.+.+++.+++++ ++++++++|+.+-.+
T Consensus 152 s~~~~~------------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~~~~v~pg~v~t~ 201 (247)
T PRK08945 152 SSVGRQ------------------------GRANWGAYAVSKFATEGMMQVLADEYQGTNLRVNCINPGGTRTA 201 (247)
T ss_pred cHhhcC------------------------CCCCCcccHHHHHHHHHHHHHHHHHhcccCEEEEEEecCCccCc
Confidence 954221 11235689999999999999988875 688999999887655
|
|
| >PRK06924 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.7e-18 Score=160.60 Aligned_cols=172 Identities=15% Similarity=0.133 Sum_probs=125.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+||||||+|+||++++++|+++|++|++++|.... .++.+.+..+.+++++.+|++|.+
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~~-------------------~~~~~~~~~~~~~~~~~~D~~~~~ 61 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEKGTHVISISRTENK-------------------ELTKLAEQYNSNLTFHSLDLQDVH 61 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhcCCEEEEEeCCchH-------------------HHHHHHhccCCceEEEEecCCCHH
Confidence 3689999999999999999999999999999875421 111111112357889999999999
Q ss_pred HHHHHhhhc-------CC--CEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeec
Q 011707 166 FLSESFKSF-------EP--DAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGT 230 (479)
Q Consensus 166 ~~~~~~~~~-------~~--D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS 230 (479)
+++++++.. +. +++|||||..... ....+.+++...+++|+.++..+++.+.. .+..++||++||
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~iv~~sS 141 (251)
T PRK06924 62 ELETNFNEILSSIQEDNVSSIHLINNAGMVAPIKPIEKAESEELITNVHLNLLAPMILTSTFMKHTKDWKVDKRVINISS 141 (251)
T ss_pred HHHHHHHHHHHhcCcccCCceEEEEcceecccCcccccCCHHHHHHHhccceehHHHHHHHHHHHHhccCCCceEEEecc
Confidence 998887643 12 2899999975331 22234456778899999997777766543 232238999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-----CCceEEeecCeeecC
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-----GIRATDLNQGVVYGV 300 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gl~~~ivRp~~v~Gp 300 (479)
...+. +..+...|+.+|++.+.+++.++.+. +++++.++||.+-.+
T Consensus 142 ~~~~~------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~ 192 (251)
T PRK06924 142 GAAKN------------------------PYFGWSAYCSSKAGLDMFTQTVATEQEEEEYPVKIVAFSPGVMDTN 192 (251)
T ss_pred hhhcC------------------------CCCCcHHHhHHHHHHHHHHHHHHHHhhhcCCCeEEEEecCCccccH
Confidence 65431 23446889999999999999988763 699999999987654
|
|
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-17 Score=158.22 Aligned_cols=207 Identities=15% Similarity=0.064 Sum_probs=147.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++++||||||+|+||.+++++|+++|++|++++|...... +..... ..+.++.++.+|++|
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~----------------~~~~~~--~~~~~~~~~~~D~~d 64 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLE----------------ALAARL--PYPGRHRWVVADLTS 64 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHH----------------HHHHHH--hcCCceEEEEccCCC
Confidence 45789999999999999999999999999999998643211 111111 113478899999999
Q ss_pred hHHHHHHhhhc----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc-c
Q 011707 164 FEFLSESFKSF----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG-E 233 (479)
Q Consensus 164 ~~~~~~~~~~~----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~-v 233 (479)
+++++++++.. .+|+|||+||...... ...+.+++..++++|+.|+.++++.+.. .+.+ +||++||.. .
T Consensus 65 ~~~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~isS~~~~ 143 (263)
T PRK09072 65 EAGREAVLARAREMGGINVLINNAGVNHFALLEDQDPEAIERLLALNLTAPMQLTRALLPLLRAQPSA-MVVNVGSTFGS 143 (263)
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCccccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC-EEEEecChhhC
Confidence 99888776632 5899999999754322 2234456677899999999999988854 2334 789888843 2
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
++. .....|+.+|++.+.+++.++.++ +++++++.||.+..+....
T Consensus 144 ~~~-------------------------~~~~~Y~~sK~a~~~~~~~l~~~~~~~~i~v~~v~Pg~~~t~~~~~------ 192 (263)
T PRK09072 144 IGY-------------------------PGYASYCASKFALRGFSEALRRELADTGVRVLYLAPRATRTAMNSE------ 192 (263)
T ss_pred cCC-------------------------CCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccccchhh------
Confidence 222 225679999999999999888764 7999999999886553110
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP 367 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~ 367 (479)
... . ... .....+..++|+|++++.++++.
T Consensus 193 -----------------~~~------~--~~~--~~~~~~~~~~~va~~i~~~~~~~ 222 (263)
T PRK09072 193 -----------------AVQ------A--LNR--ALGNAMDDPEDVAAAVLQAIEKE 222 (263)
T ss_pred -----------------hcc------c--ccc--cccCCCCCHHHHHHHHHHHHhCC
Confidence 000 0 000 00113578899999999999864
|
|
| >PRK08594 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.4e-17 Score=158.54 Aligned_cols=231 Identities=14% Similarity=0.152 Sum_probs=154.1
Q ss_pred CCCcEEEEEcCC--chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhc-ccCCCceeEEEcc
Q 011707 84 SKAKRVMIIGGD--GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK-SLTGKNIELYIGD 160 (479)
Q Consensus 84 ~~~~~vLVtGat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~D 160 (479)
+++|+++||||+ ++||.+++++|+++|++|++++|..+.. +.++.+. +..+.++.++.+|
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~-----------------~~~~~~~~~~~~~~~~~~~~D 67 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLE-----------------KEVRELADTLEGQESLLLPCD 67 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccch-----------------HHHHHHHHHcCCCceEEEecC
Confidence 468999999997 8999999999999999999887642210 1111111 1113468889999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEee
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLG 229 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~S 229 (479)
++|+++++++++.. ++|++|||||.... +....+.+++...+++|+.++..+++++...- .+.+||++|
T Consensus 68 v~d~~~v~~~~~~~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 68 VTSDEEITACFETIKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred CCCHHHHHHHHHHHHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 99999888877632 59999999997531 11233455677889999999998888776431 123899999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|.... . +......|+.||++.+.+++.++.++ |++++.|.||.|-.+.....
T Consensus 148 S~~~~--~----------------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~- 202 (257)
T PRK08594 148 YLGGE--R----------------------VVQNYNVMGVAKASLEASVKYLANDLGKDGIRVNAISAGPIRTLSAKGV- 202 (257)
T ss_pred ccCCc--c----------------------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCCEEeeeecCcccCHhHhhh-
Confidence 85321 1 11235689999999999999998874 79999999998865421000
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. ........... .....+...+|++++++.++......-.++++.+.++
T Consensus 203 ---------------~~-~~~~~~~~~~~---------~p~~r~~~p~~va~~~~~l~s~~~~~~tG~~~~~dgg 252 (257)
T PRK08594 203 ---------------GG-FNSILKEIEER---------APLRRTTTQEEVGDTAAFLFSDLSRGVTGENIHVDSG 252 (257)
T ss_pred ---------------cc-ccHHHHHHhhc---------CCccccCCHHHHHHHHHHHcCcccccccceEEEECCc
Confidence 00 00011111111 1122457889999999999875443222237776554
|
|
| >PRK08159 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-17 Score=157.58 Aligned_cols=232 Identities=14% Similarity=0.119 Sum_probs=155.4
Q ss_pred CCCCcEEEEEcCC--chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGD--GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.+++|++|||||+ ++||.+++++|+++|++|++.+|... ..+.++.+.... .....+.+|
T Consensus 7 ~~~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~-----------------~~~~~~~l~~~~-~~~~~~~~D 68 (272)
T PRK08159 7 LMAGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDA-----------------LKKRVEPLAAEL-GAFVAGHCD 68 (272)
T ss_pred cccCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchH-----------------HHHHHHHHHHhc-CCceEEecC
Confidence 4568999999997 89999999999999999988765321 011222221111 235578999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEee
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLG 229 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~S 229 (479)
++|+++++++++.. ++|++|||||.... +....+.+++.+.+++|+.++..+++++... ..+.+||++|
T Consensus 69 l~~~~~v~~~~~~~~~~~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~is 148 (272)
T PRK08159 69 VTDEASIDAVFETLEKKWGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLT 148 (272)
T ss_pred CCCHHHHHHHHHHHHHhcCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 99999998887643 58999999997532 1123355678889999999999999887653 1123899999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|.+... +......|+.+|++.+.+++.++.++ |++++++.||.|..+....
T Consensus 149 s~~~~~------------------------~~p~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~-- 202 (272)
T PRK08159 149 YYGAEK------------------------VMPHYNVMGVAKAALEASVKYLAVDLGPKNIRVNAISAGPIKTLAASG-- 202 (272)
T ss_pred cccccc------------------------CCCcchhhhhHHHHHHHHHHHHHHHhcccCeEEEEeecCCcCCHHHhc--
Confidence 853221 11235689999999999999998874 7999999999886532100
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQ 382 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~ 382 (479)
. .. . ......... .. ....+...+|++++++.++......-.++++.+.++.
T Consensus 203 -------------~-~~-~-~~~~~~~~~-~~-------p~~r~~~peevA~~~~~L~s~~~~~itG~~i~vdgG~ 254 (272)
T PRK08159 203 -------------I-GD-F-RYILKWNEY-NA-------PLRRTVTIEEVGDSALYLLSDLSRGVTGEVHHVDSGY 254 (272)
T ss_pred -------------C-Cc-c-hHHHHHHHh-CC-------cccccCCHHHHHHHHHHHhCccccCccceEEEECCCc
Confidence 0 00 0 001111111 11 1123578899999999999764432223477777653
|
|
| >PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6e-17 Score=154.16 Aligned_cols=236 Identities=11% Similarity=-0.016 Sum_probs=154.0
Q ss_pred CCCcEEEEEcCCc--hhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGDG--YCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGatG--~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|+||||||+| +||.+++++|+++|++|++.++........ .........+..+.+. ..+.++.++.+|+
T Consensus 4 l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~g~~~~~~~~D~ 77 (256)
T PRK12859 4 LKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMP-----WGVDQDEQIQLQEELL-KNGVKVSSMELDL 77 (256)
T ss_pred cCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeccccccccc-----ccccHHHHHHHHHHHH-hcCCeEEEEEcCC
Confidence 5689999999995 899999999999999999876432111000 0000000111111121 1235788899999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~ 231 (479)
+|.+++.+++... .+|+||||||..... ....+++++...+++|+.|+..+.+++ ++.+.+ +||++||.
T Consensus 78 ~~~~~i~~~~~~~~~~~g~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g-~iv~isS~ 156 (256)
T PRK12859 78 TQNDAPKELLNKVTEQLGYPHILVNNAAYSTNNDFSNLTAEELDKHYMVNVRATTLLSSQFARGFDKKSGG-RIINMTSG 156 (256)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCe-EEEEEccc
Confidence 9999888887643 489999999975432 233455677888999999998886544 333334 99999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
.... +..+...|+.+|++.+.+++.++.+ +|++++.++||.+-.+....
T Consensus 157 ~~~~------------------------~~~~~~~Y~~sK~a~~~l~~~la~~~~~~~i~v~~v~PG~i~t~~~~~---- 208 (256)
T PRK12859 157 QFQG------------------------PMVGELAYAATKGAIDALTSSLAAEVAHLGITVNAINPGPTDTGWMTE---- 208 (256)
T ss_pred ccCC------------------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEEccccCCCCCH----
Confidence 4321 2234689999999999999998876 48999999999886553211
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.....+.... ....+...+|++++++.++......-.++++.+.++
T Consensus 209 ------------------~~~~~~~~~~---------~~~~~~~~~d~a~~~~~l~s~~~~~~~G~~i~~dgg 254 (256)
T PRK12859 209 ------------------EIKQGLLPMF---------PFGRIGEPKDAARLIKFLASEEAEWITGQIIHSEGG 254 (256)
T ss_pred ------------------HHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCccccCccCcEEEeCCC
Confidence 1111111111 112345789999999998865433212236665543
|
|
| >PRK06603 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.9e-17 Score=156.65 Aligned_cols=230 Identities=13% Similarity=0.088 Sum_probs=153.2
Q ss_pred CCCcEEEEEcCCc--hhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGDG--YCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGatG--~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|++|||||++ +||.++++.|+++|++|++.+|... ..+.++.+....+ ...++.+|+
T Consensus 6 ~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~-----------------~~~~~~~l~~~~g-~~~~~~~Dv 67 (260)
T PRK06603 6 LQGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEV-----------------LEKRVKPLAEEIG-CNFVSELDV 67 (260)
T ss_pred cCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchH-----------------HHHHHHHHHHhcC-CceEEEccC
Confidence 4689999999997 8999999999999999998876421 0111222211111 224578999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeec
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS 230 (479)
+|+++++++++.. ++|++|||||.... +....+.+++.+.+++|+.++..+++++... ..+.+||++||
T Consensus 68 ~~~~~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~m~~~G~Iv~isS 147 (260)
T PRK06603 68 TNPKSISNLFDDIKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNSLHISCYSLLELSRSAEALMHDGGSIVTLTY 147 (260)
T ss_pred CCHHHHHHHHHHHHHHcCCccEEEEccccCCcccccCccccCCHHHHHHHHHHHHHHHHHHHHHHHhhhccCceEEEEec
Confidence 9999988887642 59999999997432 1223355678889999999999999876432 11238999998
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
..... +......|+.||++.+.+++.++.++ |++++.+.||.|-.+....
T Consensus 148 ~~~~~------------------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~v~PG~v~T~~~~~--- 200 (260)
T PRK06603 148 YGAEK------------------------VIPNYNVMGVAKAALEASVKYLANDMGENNIRVNAISAGPIKTLASSA--- 200 (260)
T ss_pred Ccccc------------------------CCCcccchhhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcCcchhhhc---
Confidence 54221 11225689999999999999999874 7999999999986542100
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
. .. ............+ ...+...+|++++++.++......-.++++.+.++
T Consensus 201 ---------~----~~-~~~~~~~~~~~~p---------~~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgG 251 (260)
T PRK06603 201 ---------I----GD-FSTMLKSHAATAP---------LKRNTTQEDVGGAAVYLFSELSKGVTGEIHYVDCG 251 (260)
T ss_pred ---------C----CC-cHHHHHHHHhcCC---------cCCCCCHHHHHHHHHHHhCcccccCcceEEEeCCc
Confidence 0 00 0111111111111 22457889999999999976443222237777654
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-17 Score=155.64 Aligned_cols=229 Identities=14% Similarity=0.122 Sum_probs=153.6
Q ss_pred CCCCcEEEEEcCC--chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGD--GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.+++|++|||||+ ++||.+++++|+++|++|++++|..+.. +.++...+.. ..+.++.+|
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~-----------------~~~~~~~~~~-~~~~~~~~D 68 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKAR-----------------PYVEPLAEEL-DAPIFLPLD 68 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhH-----------------HHHHHHHHhh-ccceEEecC
Confidence 4578999999998 5999999999999999999988753210 0111111111 234578999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEee
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLG 229 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~S 229 (479)
++|.++++++++.. ++|++|||||.... +....+++++..++++|+.|+.++++++... ..+.+||++|
T Consensus 69 ~~~~~~v~~~~~~~~~~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 69 VREPGQLEAVFARIAEEWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 99999888877643 58999999997432 1122355678889999999999999877542 1113899999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|.+.. . +......|+.+|++.+.+++.++.++ |++++.+.||.|-.+....
T Consensus 149 s~~~~--~----------------------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~v~PG~v~T~~~~~-- 202 (258)
T PRK07533 149 YYGAE--K----------------------VVENYNLMGPVKAALESSVRYLAAELGPKGIRVHAISPGPLKTRAASG-- 202 (258)
T ss_pred ccccc--c----------------------CCccchhhHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCcCChhhhc--
Confidence 85321 0 11235689999999999999998874 7999999999886542110
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. .. ............+ ...+...+|++++++.++..... .|+ ++.+.++
T Consensus 203 -------------~-~~-~~~~~~~~~~~~p---------~~r~~~p~dva~~~~~L~s~~~~~itG~--~i~vdgg 253 (258)
T PRK07533 203 -------------I-DD-FDALLEDAAERAP---------LRRLVDIDDVGAVAAFLASDAARRLTGN--TLYIDGG 253 (258)
T ss_pred -------------c-CC-cHHHHHHHHhcCC---------cCCCCCHHHHHHHHHHHhChhhccccCc--EEeeCCc
Confidence 0 00 0111222221111 12457889999999999875432 344 6666554
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.7e-17 Score=155.54 Aligned_cols=230 Identities=13% Similarity=0.056 Sum_probs=152.5
Q ss_pred CCCcEEEEEcC--CchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGG--DGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGa--tG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|+++|||| +++||.+++++|+++|++|++++|.... +..+.+......++.++.+|+
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~------------------~~~~~~~~~~~~~~~~~~~Dv 66 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRAL------------------RLTERIAKRLPEPAPVLELDV 66 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccch------------------hHHHHHHHhcCCCCcEEeCCC
Confidence 46789999999 8999999999999999999998864211 001111111123577899999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeec
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS 230 (479)
+|+++++++++.. ++|++|||||.... +....+.+++.+++++|+.|+..+++++... ..+.+||++|+
T Consensus 67 ~~~~~i~~~~~~~~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~ 146 (256)
T PRK07889 67 TNEEHLASLADRVREHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDF 146 (256)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEee
Confidence 9999888877542 69999999997532 1122345567778999999999998877542 11138998886
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
.+..+ ......|+.||++.+.+++.++.++ |++++.+.||.|-.+.....
T Consensus 147 ~~~~~-------------------------~~~~~~Y~asKaal~~l~~~la~el~~~gIrvn~v~PG~v~T~~~~~~-- 199 (256)
T PRK07889 147 DATVA-------------------------WPAYDWMGVAKAALESTNRYLARDLGPRGIRVNLVAAGPIRTLAAKAI-- 199 (256)
T ss_pred ccccc-------------------------CCccchhHHHHHHHHHHHHHHHHHhhhcCeEEEeeccCcccChhhhcc--
Confidence 43211 1125679999999999999998874 79999999998865531100
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.+ .......+....++ .+.+...+|+|++++.++......-..+++.+.++
T Consensus 200 ----------~~-----~~~~~~~~~~~~p~--------~~~~~~p~evA~~v~~l~s~~~~~~tG~~i~vdgg 250 (256)
T PRK07889 200 ----------PG-----FELLEEGWDERAPL--------GWDVKDPTPVARAVVALLSDWFPATTGEIVHVDGG 250 (256)
T ss_pred ----------cC-----cHHHHHHHHhcCcc--------ccccCCHHHHHHHHHHHhCcccccccceEEEEcCc
Confidence 00 00111111111110 11357899999999999876443222237777654
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-17 Score=155.16 Aligned_cols=172 Identities=16% Similarity=0.098 Sum_probs=125.3
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|++|||||+|+||..++++|+++|++|++++|.... +.+..+.+... .++.++.+|++|+++
T Consensus 1 m~vlItGas~gIG~aia~~l~~~G~~V~~~~r~~~~----------------~~~~~~~l~~~--~~~~~~~~Dv~d~~~ 62 (259)
T PRK08340 1 MNVLVTASSRGIGFNVARELLKKGARVVISSRNEEN----------------LEKALKELKEY--GEVYAVKADLSDKDD 62 (259)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCCHHH----------------HHHHHHHHHhc--CCceEEEcCCCCHHH
Confidence 589999999999999999999999999999875431 11111222111 357889999999999
Q ss_pred HHHHhhhc-----CCCEEEEcccccCcc---cccccccccchhhhhhHHHHHHHHHHH----H-HcCCcceEEEeecccc
Q 011707 167 LSESFKSF-----EPDAVVHFGEQRSAP---YSMIDRSRAVFTQHNNVIGTLNVLFAM----K-EFRQECHLVKLGTMGE 233 (479)
Q Consensus 167 ~~~~~~~~-----~~D~Vih~A~~~~~~---~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~-~~g~~~~~V~~SS~~v 233 (479)
++++++.. ++|+||||||..... ....+.+++...+.+|+.++..+...+ . +.+.+ +||++||...
T Consensus 63 ~~~~~~~~~~~~g~id~li~naG~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~l~~~~~~~~~g-~iv~isS~~~ 141 (259)
T PRK08340 63 LKNLVKEAWELLGGIDALVWNAGNVRCEPCMLHEAGYSDWLEAALLHLVAPGYLTTLLIQAWLEKKMKG-VLVYLSSVSV 141 (259)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCccccccccHHHHHHHHhhcchHHHHHHHHHHHHHHhcCCCC-EEEEEeCccc
Confidence 88887642 699999999974321 122234456667788988876665443 2 22334 8999999654
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCC
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVR 301 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~ 301 (479)
.. +..+...|+.+|++.+.+++.++.++ |++++.+.||.+-.+.
T Consensus 142 ~~------------------------~~~~~~~y~~sKaa~~~~~~~la~e~~~~gI~v~~v~pG~v~t~~ 188 (259)
T PRK08340 142 KE------------------------PMPPLVLADVTRAGLVQLAKGVSRTYGGKGIRAYTVLLGSFDTPG 188 (259)
T ss_pred CC------------------------CCCCchHHHHHHHHHHHHHHHHHHHhCCCCEEEEEeccCcccCcc
Confidence 32 22335789999999999999999885 6999999999886654
|
|
| >PRK07370 enoyl-(acyl carrier protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=157.55 Aligned_cols=233 Identities=13% Similarity=0.118 Sum_probs=154.8
Q ss_pred CCCcEEEEEcCC--chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGD--GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|++|||||+ ++||.+++++|+++|++|++.++..... ...+.++.+... ...+.++.+|+
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~--------------~~~~~~~~~~~~-~~~~~~~~~Dl 68 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKG--------------RFEKKVRELTEP-LNPSLFLPCDV 68 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccc--------------hHHHHHHHHHhc-cCcceEeecCc
Confidence 468999999986 8999999999999999998876532210 011122222211 13467889999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeec
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS 230 (479)
+|+++++++++.. ++|++|||||.... +....+.+++.+.+++|+.|+..+++++... ..+.+||++||
T Consensus 69 ~d~~~v~~~~~~~~~~~g~iD~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~~~~m~~~g~Iv~isS 148 (258)
T PRK07370 69 QDDAQIEETFETIKQKWGKLDILVHCLAFAGKEELIGDFSATSREGFARALEISAYSLAPLCKAAKPLMSEGGSIVTLTY 148 (258)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEEcccccCcccccCcchhhCHHHHHHHheeeeHHHHHHHHHHHHHHhhCCeEEEEec
Confidence 9999998877643 69999999997531 2223356678899999999999998877532 11238999998
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
..-. . +......|+.+|++.+.+++.++.++ |++++++.||.|-.+....
T Consensus 149 ~~~~--~----------------------~~~~~~~Y~asKaal~~l~~~la~el~~~gI~Vn~i~PG~v~T~~~~~--- 201 (258)
T PRK07370 149 LGGV--R----------------------AIPNYNVMGVAKAALEASVRYLAAELGPKNIRVNAISAGPIRTLASSA--- 201 (258)
T ss_pred cccc--c----------------------CCcccchhhHHHHHHHHHHHHHHHHhCcCCeEEEEEecCcccCchhhc---
Confidence 5321 1 11235789999999999999999875 7999999999986552110
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
..+ .......+... .....+...+|++.++..++......-.++++.+.++
T Consensus 202 ---------~~~-----~~~~~~~~~~~---------~p~~r~~~~~dva~~~~fl~s~~~~~~tG~~i~vdgg 252 (258)
T PRK07370 202 ---------VGG-----ILDMIHHVEEK---------APLRRTVTQTEVGNTAAFLLSDLASGITGQTIYVDAG 252 (258)
T ss_pred ---------ccc-----chhhhhhhhhc---------CCcCcCCCHHHHHHHHHHHhChhhccccCcEEEECCc
Confidence 000 00111111111 1122467789999999999875443212236666553
|
|
| >PRK08690 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.8e-17 Score=155.23 Aligned_cols=229 Identities=14% Similarity=0.158 Sum_probs=151.8
Q ss_pred CCCcEEEEEcC--CchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGG--DGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGa--tG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|++||||| +++||.+++++|+++|++|++.++..+. .+.++...... .....+++|+
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~Dv 65 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAFTYVVDKL-----------------EERVRKMAAEL-DSELVFRCDV 65 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCcHHH-----------------HHHHHHHHhcc-CCceEEECCC
Confidence 56899999997 6799999999999999999987653211 11222221111 2345789999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCcc----c--ccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEE
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAP----Y--SMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVK 227 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~----~--~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~ 227 (479)
+|+++++++++.. ++|++|||||..... . ...+.+++...+++|+.++..+.+++... +.+ +||+
T Consensus 66 ~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~l~~~~~p~m~~~~g-~Iv~ 144 (261)
T PRK08690 66 ASDDEINQVFADLGKHWDGLDGLVHSIGFAPKEALSGDFLDSISREAFNTAHEISAYSLPALAKAARPMMRGRNS-AIVA 144 (261)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEECCccCCccccccchhhhcCHHHHHHHHHhchHHHHHHHHHHHHHhhhcCc-EEEE
Confidence 9999988887643 699999999975421 1 11234467778899999998888776432 223 8999
Q ss_pred eeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCc
Q 011707 228 LGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDE 304 (479)
Q Consensus 228 ~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~ 304 (479)
+||.+... +......|+.+|++.+.+++.++.+ +|++++.+.||.|--+....
T Consensus 145 iss~~~~~------------------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrVn~i~PG~v~T~~~~~ 200 (261)
T PRK08690 145 LSYLGAVR------------------------AIPNYNVMGMAKASLEAGIRFTAACLGKEGIRCNGISAGPIKTLAASG 200 (261)
T ss_pred Eccccccc------------------------CCCCcccchhHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccchhhhc
Confidence 99854321 1123578999999999999988876 48999999999986542110
Q ss_pred hhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 305 TAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
. .. .......+.... ....+...+|+|++++.++......-.+.++-+.++
T Consensus 201 ---------------~-~~-~~~~~~~~~~~~---------p~~r~~~peevA~~v~~l~s~~~~~~tG~~i~vdgG 251 (261)
T PRK08690 201 ---------------I-AD-FGKLLGHVAAHN---------PLRRNVTIEEVGNTAAFLLSDLSSGITGEITYVDGG 251 (261)
T ss_pred ---------------C-Cc-hHHHHHHHhhcC---------CCCCCCCHHHHHHHHHHHhCcccCCcceeEEEEcCC
Confidence 0 00 011111111111 123467899999999999986544222236766654
|
|
| >PRK07023 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7e-18 Score=159.25 Aligned_cols=168 Identities=17% Similarity=0.134 Sum_probs=127.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+++||||||+|+||.+++++|+++|++|++++|..... . ....+.++.++.+|++|.+
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~-------------------~---~~~~~~~~~~~~~D~~~~~ 58 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS-------------------L---AAAAGERLAEVELDLSDAA 58 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh-------------------h---hhccCCeEEEEEeccCCHH
Confidence 46899999999999999999999999999998753210 0 0011346888999999999
Q ss_pred HHHHHhhh---------cCCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeec
Q 011707 166 FLSESFKS---------FEPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGT 230 (479)
Q Consensus 166 ~~~~~~~~---------~~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS 230 (479)
++++++.+ ..+|++|||||.... .....+++++...+++|+.|+..+++.+.+ .+.+ +||++||
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~v~~ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~isS 137 (243)
T PRK07023 59 AAAAWLAGDLLAAFVDGASRVLLINNAGTVEPIGPLATLDAAAIARAVGLNVAAPLMLTAALAQAASDAAER-RILHISS 137 (243)
T ss_pred HHHHHHHHHHHHHhccCCCceEEEEcCcccCCCCccccCCHHHHHHHeeeeehHHHHHHHHHHHHhhccCCC-EEEEEeC
Confidence 88885543 158999999997543 222334556778899999998877766643 3334 9999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH--hCCceEEeecCeeecC
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA--WGIRATDLNQGVVYGV 300 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~--~gl~~~ivRp~~v~Gp 300 (479)
...+. +..+...|+.+|.+.|.+++.++.+ .|+++++++||.+-.+
T Consensus 138 ~~~~~------------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~i~v~~v~pg~~~t~ 185 (243)
T PRK07023 138 GAARN------------------------AYAGWSVYCATKAALDHHARAVALDANRALRIVSLAPGVVDTG 185 (243)
T ss_pred hhhcC------------------------CCCCchHHHHHHHHHHHHHHHHHhcCCCCcEEEEecCCccccH
Confidence 76542 2234678999999999999988876 4799999999987554
|
|
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-17 Score=152.12 Aligned_cols=221 Identities=18% Similarity=0.144 Sum_probs=151.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++++||||||+|+||.++++.|+++|++|++++|..... .+....... ..++.++.+|+++
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~--~~~~~~~~~Dl~~ 64 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKL----------------KRMKKTLSK--YGNIHYVVGDVSS 64 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh--cCCeEEEECCCCC
Confidence 4678999999999999999999999999999998854311 011011111 1367889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeecccc-ccC
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGE-YGT 236 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v-~g~ 236 (479)
.++++++++.. ++|.+||++|..... ...+.+++...+++|+.++..+++.+... ....+||++||... ++
T Consensus 65 ~~~~~~~~~~~~~~~~~id~ii~~ag~~~~~-~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~~~~~~- 142 (238)
T PRK05786 65 TESARNVIEKAAKVLNAIDGLVVTVGGYVED-TVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSSMSGIYK- 142 (238)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEcCCCcCCC-chHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEecchhccc-
Confidence 99888877642 479999999864322 22233556777899999999888887653 11138999998543 21
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
+..+...|+.+|++.+.+++.++.+. |++++++||++++++....
T Consensus 143 -----------------------~~~~~~~Y~~sK~~~~~~~~~~~~~~~~~gi~v~~i~pg~v~~~~~~~--------- 190 (238)
T PRK05786 143 -----------------------ASPDQLSYAVAKAGLAKAVEILASELLGRGIRVNGIAPTTISGDFEPE--------- 190 (238)
T ss_pred -----------------------CCCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCccCCCCCch---------
Confidence 11235679999999999999888764 8999999999999874211
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
...... .. ....++..+|++++++.++..+...-.+..+.+.+
T Consensus 191 -------------~~~~~~---------~~--~~~~~~~~~~va~~~~~~~~~~~~~~~g~~~~~~~ 233 (238)
T PRK05786 191 -------------RNWKKL---------RK--LGDDMAPPEDFAKVIIWLLTDEADWVDGVVIPVDG 233 (238)
T ss_pred -------------hhhhhh---------cc--ccCCCCCHHHHHHHHHHHhcccccCccCCEEEECC
Confidence 000000 00 01135778999999999997644321123666554
|
|
| >PRK07578 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=150.64 Aligned_cols=193 Identities=15% Similarity=0.140 Sum_probs=143.0
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|++|||||+|+||.++++.|+++ ++|++++|.. ..+.+|++|.++
T Consensus 1 ~~vlItGas~giG~~la~~l~~~-~~vi~~~r~~----------------------------------~~~~~D~~~~~~ 45 (199)
T PRK07578 1 MKILVIGASGTIGRAVVAELSKR-HEVITAGRSS----------------------------------GDVQVDITDPAS 45 (199)
T ss_pred CeEEEEcCCcHHHHHHHHHHHhc-CcEEEEecCC----------------------------------CceEecCCChHH
Confidence 47999999999999999999999 9999887631 135799999999
Q ss_pred HHHHhhhc-CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHHc--CCcceEEEeeccccccCCCCCCc
Q 011707 167 LSESFKSF-EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKEF--RQECHLVKLGTMGEYGTPNIDIE 242 (479)
Q Consensus 167 ~~~~~~~~-~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--g~~~~~V~~SS~~v~g~~~~~~~ 242 (479)
++++++.. ++|+||||||....... ..+++++...+++|+.++.++++++... +.+ +|+++||.... .
T Consensus 46 ~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g-~iv~iss~~~~--~----- 117 (199)
T PRK07578 46 IRALFEKVGKVDAVVSAAGKVHFAPLAEMTDEDFNVGLQSKLMGQVNLVLIGQHYLNDGG-SFTLTSGILSD--E----- 117 (199)
T ss_pred HHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-eEEEEcccccC--C-----
Confidence 99998865 69999999997543222 2345567888999999999999988653 223 89999985321 1
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH--hCCceEEeecCeeecCCCCchhhhHhhhcccCCCCc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA--WGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~--~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~ 320 (479)
+......|+.+|++.+.+++.++.+ .|++++.+.||.+-.+..
T Consensus 118 -----------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~gi~v~~i~Pg~v~t~~~------------------ 162 (199)
T PRK07578 118 -----------------PIPGGASAATVNGALEGFVKAAALELPRGIRINVVSPTVLTESLE------------------ 162 (199)
T ss_pred -----------------CCCCchHHHHHHHHHHHHHHHHHHHccCCeEEEEEcCCcccCchh------------------
Confidence 2233678999999999999998886 489999999988743310
Q ss_pred ccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeC
Q 011707 321 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQF 379 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~ 379 (479)
.+ +. .+. ...++..+|+|++++.+++.. ..|+ +|+++
T Consensus 163 ------~~------~~---~~~----~~~~~~~~~~a~~~~~~~~~~-~~g~--~~~~~ 199 (199)
T PRK07578 163 ------KY------GP---FFP----GFEPVPAARVALAYVRSVEGA-QTGE--VYKVG 199 (199)
T ss_pred ------hh------hh---cCC----CCCCCCHHHHHHHHHHHhccc-eeeE--EeccC
Confidence 00 00 011 124689999999999999864 3343 77754
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.1e-17 Score=153.18 Aligned_cols=230 Identities=13% Similarity=0.145 Sum_probs=151.9
Q ss_pred CCCcEEEEEcCCc--hhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGDG--YCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGatG--~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|++|||||++ +||.+++++|+++|++|++++|..+ +.+.++.+... ...+.++.+|+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~-----------------~~~~~~~~~~~-~~~~~~~~~Dl 65 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK-----------------LKGRVEEFAAQ-LGSDIVLPCDV 65 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchh-----------------HHHHHHHHHhc-cCCceEeecCC
Confidence 4689999999985 9999999999999999998876421 01112222111 13456789999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCcc------cccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEee
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAP------YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLG 229 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~------~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~S 229 (479)
+|+++++++++.. ++|++|||||..... ....+.+++...+++|+.|+..+.+++... ..+.+||++|
T Consensus 66 ~~~~~v~~~~~~~~~~~g~iD~linnAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 145 (262)
T PRK07984 66 AEDASIDAMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS 145 (262)
T ss_pred CCHHHHHHHHHHHHhhcCCCCEEEECCccCCccccCCcchhhcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 9999998887642 589999999964321 112244567788999999999988877542 1113899999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|.+.. . +......|+.||++.+.+++.++.++ |++++++.||.|.-+....
T Consensus 146 s~~~~--~----------------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~-- 199 (262)
T PRK07984 146 YLGAE--R----------------------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASG-- 199 (262)
T ss_pred cCCCC--C----------------------CCCCcchhHHHHHHHHHHHHHHHHHhcccCcEEeeeecCcccchHHhc--
Confidence 85421 1 11235689999999999999999874 7999999999885431100
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
. .. ............ ....+...+|++.+++.++......-.++++.+.++
T Consensus 200 -------------~-~~-~~~~~~~~~~~~---------p~~r~~~pedva~~~~~L~s~~~~~itG~~i~vdgg 250 (262)
T PRK07984 200 -------------I-KD-FRKMLAHCEAVT---------PIRRTVTIEDVGNSAAFLCSDLSAGISGEVVHVDGG 250 (262)
T ss_pred -------------C-Cc-hHHHHHHHHHcC---------CCcCCCCHHHHHHHHHHHcCcccccccCcEEEECCC
Confidence 0 00 011111111111 112467889999999999876433222237777654
|
|
| >PRK06997 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-16 Score=152.73 Aligned_cols=230 Identities=14% Similarity=0.127 Sum_probs=152.5
Q ss_pred CCCcEEEEEcC--CchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGG--DGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGa--tG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|++||||| ++.||.+++++|+++|++|+++++..+. .+.++.+.... .....+.+|+
T Consensus 4 l~~k~vlItGas~~~GIG~a~a~~l~~~G~~v~~~~~~~~~-----------------~~~~~~~~~~~-~~~~~~~~Dv 65 (260)
T PRK06997 4 LAGKRILITGLLSNRSIAYGIAKACKREGAELAFTYVGDRF-----------------KDRITEFAAEF-GSDLVFPCDV 65 (260)
T ss_pred cCCcEEEEeCCCCCCcHHHHHHHHHHHCCCeEEEEccchHH-----------------HHHHHHHHHhc-CCcceeeccC
Confidence 46899999996 6899999999999999999987653221 01111111111 1234688999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCcc----c--ccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEee
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAP----Y--SMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLG 229 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~----~--~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~S 229 (479)
+|+++++++++.. ++|++|||||..... . ...+.+++...+++|+.++..+.+++... ..+.+||++|
T Consensus 66 ~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~iN~~~~~~l~~~~lp~m~~~g~Ii~is 145 (260)
T PRK06997 66 ASDEQIDALFASLGQHWDGLDGLVHSIGFAPREAIAGDFLDGLSRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 145 (260)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEccccCCccccccccchhcCHHHHHHHHHhhhHHHHHHHHHHHHhcCCCceEEEEe
Confidence 9999998887643 599999999975321 1 12345577888999999999998887653 1123899999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|.... . +......|+.+|++.+.+++.++.++ |++++.+.||.|-.+....
T Consensus 146 s~~~~--~----------------------~~~~~~~Y~asKaal~~l~~~la~el~~~gIrVn~i~PG~v~T~~~~~-- 199 (260)
T PRK06997 146 YLGAE--R----------------------VVPNYNTMGLAKASLEASVRYLAVSLGPKGIRANGISAGPIKTLAASG-- 199 (260)
T ss_pred ccccc--c----------------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCccccchhcc--
Confidence 85421 1 11225679999999999999999874 7999999999885542110
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
. .. .......+.... ....+...+|+++++..++..+...-.++++.+.++
T Consensus 200 -------------~-~~-~~~~~~~~~~~~---------p~~r~~~pedva~~~~~l~s~~~~~itG~~i~vdgg 250 (260)
T PRK06997 200 -------------I-KD-FGKILDFVESNA---------PLRRNVTIEEVGNVAAFLLSDLASGVTGEITHVDSG 250 (260)
T ss_pred -------------c-cc-hhhHHHHHHhcC---------cccccCCHHHHHHHHHHHhCccccCcceeEEEEcCC
Confidence 0 00 001111111111 112357899999999999986443222247777654
|
|
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=99.76 E-value=7e-17 Score=158.27 Aligned_cols=177 Identities=15% Similarity=0.103 Sum_probs=126.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccC-CCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT-GKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~d 163 (479)
.|++++||||||+||.+++++|+++|++|++++|+.... .+..+.+.... ..++..+.+|+++
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l----------------~~~~~~l~~~~~~~~~~~~~~Dl~~ 115 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKL----------------KDVSDSIQSKYSKTQIKTVVVDFSG 115 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHH----------------HHHHHHHHHHCCCcEEEEEEEECCC
Confidence 478999999999999999999999999999999864321 11112222111 2367788899985
Q ss_pred --hHHHHHHhh---hcCCCEEEEcccccCc---ccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 164 --FEFLSESFK---SFEPDAVVHFGEQRSA---PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 164 --~~~~~~~~~---~~~~D~Vih~A~~~~~---~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
.+.++++.+ ..++|++|||||.... .....+.+++..++++|+.|+.++++++.. .+.+ +||++||.
T Consensus 116 ~~~~~~~~l~~~~~~~didilVnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g-~IV~iSS~ 194 (320)
T PLN02780 116 DIDEGVKRIKETIEGLDVGVLINNVGVSYPYARFFHEVDEELLKNLIKVNVEGTTKVTQAVLPGMLKRKKG-AIINIGSG 194 (320)
T ss_pred CcHHHHHHHHHHhcCCCccEEEEecCcCCCCCcccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCc-EEEEEech
Confidence 344444433 2246799999997532 122334556778899999999999888743 3445 99999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecC
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGV 300 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp 300 (479)
..+..+ +......|+.||++.+.+.+.++.+. |++++++.||.|-.+
T Consensus 195 a~~~~~----------------------~~p~~~~Y~aSKaal~~~~~~L~~El~~~gI~V~~v~PG~v~T~ 244 (320)
T PLN02780 195 AAIVIP----------------------SDPLYAVYAATKAYIDQFSRCLYVEYKKSGIDVQCQVPLYVATK 244 (320)
T ss_pred hhccCC----------------------CCccchHHHHHHHHHHHHHHHHHHHHhccCeEEEEEeeCceecC
Confidence 543211 01225789999999999999998875 799999999998654
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.1e-17 Score=150.28 Aligned_cols=164 Identities=19% Similarity=0.177 Sum_probs=123.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+++||||+|+||++++++|+++|++|++++|.... ++...+. .++.++.+|++|+++
T Consensus 1 m~vlItGas~giG~~ia~~l~~~g~~v~~~~r~~~~--------------------~~~~~~~--~~~~~~~~D~~~~~~ 58 (223)
T PRK05884 1 VEVLVTGGDTDLGRTIAEGFRNDGHKVTLVGARRDD--------------------LEVAAKE--LDVDAIVCDNTDPAS 58 (223)
T ss_pred CeEEEEeCCchHHHHHHHHHHHCCCEEEEEeCCHHH--------------------HHHHHHh--ccCcEEecCCCCHHH
Confidence 479999999999999999999999999999875431 1111100 136688999999999
Q ss_pred HHHHhhhc--CCCEEEEcccccCc---c--cccc-cccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccccCC
Q 011707 167 LSESFKSF--EPDAVVHFGEQRSA---P--YSMI-DRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEYGTP 237 (479)
Q Consensus 167 ~~~~~~~~--~~D~Vih~A~~~~~---~--~~~~-~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~g~~ 237 (479)
++++++.. ++|++|||||.... + .... ..+++.+++++|+.++.++++++... ..+.+||++||.. .
T Consensus 59 v~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~Iv~isS~~---~- 134 (223)
T PRK05884 59 LEEARGLFPHHLDTIVNVPAPSWDAGDPRTYSLADTANAWRNALDATVLSAVLTVQSVGDHLRSGGSIISVVPEN---P- 134 (223)
T ss_pred HHHHHHHHhhcCcEEEECCCccccCCCCcccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCeEEEEecCC---C-
Confidence 99888743 58999999985211 1 0111 24578889999999999999988652 1123899999853 0
Q ss_pred CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecC
Q 011707 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGV 300 (479)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp 300 (479)
.....|+.+|++.+.+++.++.++ |++++.+.||.+..+
T Consensus 135 ------------------------~~~~~Y~asKaal~~~~~~la~e~~~~gI~v~~v~PG~v~t~ 176 (223)
T PRK05884 135 ------------------------PAGSAEAAIKAALSNWTAGQAAVFGTRGITINAVACGRSVQP 176 (223)
T ss_pred ------------------------CCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCccCch
Confidence 114679999999999999998874 799999999988543
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.1e-17 Score=155.54 Aligned_cols=175 Identities=19% Similarity=0.162 Sum_probs=127.1
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+++||||+|+||.+++++|+++|++|++++|..... .+..+.+.......+.++.+|++|+++
T Consensus 1 k~vlItGas~giG~~la~~la~~G~~vv~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~D~~~~~~ 64 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQGAELFLTDRDADGL----------------AQTVADARALGGTVPEHRALDISDYDA 64 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHhcCCCcceEEEeeCCCHHH
Confidence 5799999999999999999999999999988754311 111122222222234567899999998
Q ss_pred HHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccccccC
Q 011707 167 LSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 167 ~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v~g~ 236 (479)
+.++++.. ++|+||||||...... ...+.+++...+++|+.|+.++++++.. .+...+||++||...+.
T Consensus 65 ~~~~~~~~~~~~~~id~lv~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~l~~~~~~g~ii~isS~~~~~- 143 (272)
T PRK07832 65 VAAFAADIHAAHGSMDVVMNIAGISAWGTVDRLTHEQWRRMVDVNLMGPIHVIETFVPPMVAAGRGGHLVNVSSAAGLV- 143 (272)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccccccC-
Confidence 88777642 5899999999754322 2234456678899999999999998743 22223899999953221
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCC
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVR 301 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~ 301 (479)
+......|+.+|++.+.+++.++.+ +++++++++||.+.++.
T Consensus 144 -----------------------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~v~Pg~v~t~~ 188 (272)
T PRK07832 144 -----------------------ALPWHAAYSASKFGLRGLSEVLRFDLARHGIGVSVVVPGAVKTPL 188 (272)
T ss_pred -----------------------CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcc
Confidence 1123567999999999988887765 48999999999998875
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.7e-16 Score=151.17 Aligned_cols=245 Identities=15% Similarity=0.160 Sum_probs=149.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+++|||| |+||.+++++|+ +|++|++++|..... .+..+.+.. .+.++.++.+|++|.+
T Consensus 2 ~k~~lItGa-~gIG~~la~~l~-~G~~Vv~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~Dv~d~~ 62 (275)
T PRK06940 2 KEVVVVIGA-GGIGQAIARRVG-AGKKVLLADYNEENL----------------EAAAKTLRE-AGFDVSTQEVDVSSRE 62 (275)
T ss_pred CCEEEEECC-ChHHHHHHHHHh-CCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCeEEEEEeecCCHH
Confidence 578999998 799999999996 899999998854311 111112211 1346888999999999
Q ss_pred HHHHHhhh----cCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccccCCC-C
Q 011707 166 FLSESFKS----FEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEYGTPN-I 239 (479)
Q Consensus 166 ~~~~~~~~----~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~g~~~-~ 239 (479)
+++++++. .++|+||||||.... ..++..++++|+.|+.++++++... ..+.++|++||........ .
T Consensus 63 ~i~~~~~~~~~~g~id~li~nAG~~~~------~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~isS~~~~~~~~~~ 136 (275)
T PRK06940 63 SVKALAATAQTLGPVTGLVHTAGVSPS------QASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVIASQSGHRLPALT 136 (275)
T ss_pred HHHHHHHHHHhcCCCCEEEECCCcCCc------hhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEEEecccccCcccc
Confidence 99888764 269999999996421 1345678999999999999988653 1112667777743221110 0
Q ss_pred CCcCCceeecCCCCCCCCCC--C---CCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhh
Q 011707 240 DIEEGYITINHNGRTDTLPY--P---KQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~--~---~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
...+..+.....+.....+. + ..+...|+.||++.+.+++.++.++ |++++.+.||.+..+......
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gIrvn~i~PG~v~T~~~~~~~----- 211 (275)
T PRK06940 137 AEQERALATTPTEELLSLPFLQPDAIEDSLHAYQIAKRANALRVMAEAVKWGERGARINSISPGIISTPLAQDEL----- 211 (275)
T ss_pred hhhhccccccccccccccccccccccCCccchhHHHHHHHHHHHHHHHHHHccCCeEEEEeccCcCcCccchhhh-----
Confidence 00000000000000000000 0 0235789999999999999988874 799999999998776321000
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
...-......+....+ ...+...+|+|++++.++..... .|+ ++.+.++
T Consensus 212 ----------~~~~~~~~~~~~~~~p---------~~r~~~peeia~~~~fL~s~~~~~itG~--~i~vdgg 262 (275)
T PRK06940 212 ----------NGPRGDGYRNMFAKSP---------AGRPGTPDEIAALAEFLMGPRGSFITGS--DFLVDGG 262 (275)
T ss_pred ----------cCCchHHHHHHhhhCC---------cccCCCHHHHHHHHHHHcCcccCcccCc--eEEEcCC
Confidence 0000011111111111 12467889999999998865433 344 6776654
|
|
| >PRK07201 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-16 Score=172.53 Aligned_cols=177 Identities=20% Similarity=0.201 Sum_probs=134.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.... .+.++.++.+|++
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~Dv~ 430 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGATVFLVARNGEAL----------------DELVAEIRA-KGGTAHAYTCDLT 430 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHh-cCCcEEEEEecCC
Confidence 45789999999999999999999999999999998854321 111111111 1346889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccc---cccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeec
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYS---MIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~---~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS 230 (479)
|.++++++++.. ++|+||||||....... ..+.+++..++++|+.|+.++++++ ++.+.+ +||++||
T Consensus 431 ~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~isS 509 (657)
T PRK07201 431 DSAAVDHTVKDILAEHGHVDYLVNNAGRSIRRSVENSTDRFHDYERTMAVNYFGAVRLILGLLPHMRERRFG-HVVNVSS 509 (657)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-EEEEECC
Confidence 999998887743 69999999997432211 1112456778999999999887766 344555 9999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCC
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVR 301 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~ 301 (479)
.+.++.. .....|+.+|++.+.+++.++.++ |+++++++||.|..+.
T Consensus 510 ~~~~~~~------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~pg~v~T~~ 559 (657)
T PRK07201 510 IGVQTNA------------------------PRFSAYVASKAALDAFSDVAASETLSDGITFTTIHMPLVRTPM 559 (657)
T ss_pred hhhcCCC------------------------CCcchHHHHHHHHHHHHHHHHHHHHhhCCcEEEEECCcCcccc
Confidence 8766421 235789999999999999988764 8999999999997764
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-17 Score=173.18 Aligned_cols=177 Identities=19% Similarity=0.130 Sum_probs=134.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..+++++|||||+|+||.+++++|+++|++|++++|..... .+..+... ..+.++.++.+|++
T Consensus 312 ~~~~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~----------------~~~~~~~~-~~~~~~~~~~~Dv~ 374 (582)
T PRK05855 312 PFSGKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAA----------------ERTAELIR-AAGAVAHAYRVDVS 374 (582)
T ss_pred cCCCCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHH-hcCCeEEEEEcCCC
Confidence 45678999999999999999999999999999998854321 11111111 12346889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|++++.++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++.. .+.+.+||++||..
T Consensus 375 ~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g~iv~~sS~~ 454 (582)
T PRK05855 375 DADAMEAFAEWVRAEHGVPDIVVNNAGIGMAGGFLDTSAEDWDRVLDVNLWGVIHGCRLFGRQMVERGTGGHIVNVASAA 454 (582)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEEECCccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECChh
Confidence 999998887653 5899999999865332 2235567788899999999999887643 33223899999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecC
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGV 300 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp 300 (479)
.|.. ......|+.||++.+.+++.++.+. |++++++.||.|-.+
T Consensus 455 ~~~~------------------------~~~~~~Y~~sKaa~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~ 501 (582)
T PRK05855 455 AYAP------------------------SRSLPAYATSKAAVLMLSECLRAELAAAGIGVTAICPGFVDTN 501 (582)
T ss_pred hccC------------------------CCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCCCccc
Confidence 6642 2336789999999999999888764 899999999988654
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-17 Score=150.30 Aligned_cols=171 Identities=13% Similarity=0.072 Sum_probs=127.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+|+||||+|+||++++++|+++|++|++++|..... +.+. . ..++.++.+|++|.+
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~-----------------~~~~---~--~~~~~~~~~D~~d~~ 58 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLERGWQVTATVRGPQQD-----------------TALQ---A--LPGVHIEKLDMNDPA 58 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCCcch-----------------HHHH---h--ccccceEEcCCCCHH
Confidence 46899999999999999999999999999999864321 0011 1 135778889999999
Q ss_pred HHHHHhhhc---CCCEEEEcccccCcc---cccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeeccccccC
Q 011707 166 FLSESFKSF---EPDAVVHFGEQRSAP---YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTMGEYGT 236 (479)
Q Consensus 166 ~~~~~~~~~---~~D~Vih~A~~~~~~---~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~~v~g~ 236 (479)
+++++++.. ++|+||||||..... ....+.+++...+.+|+.++..+++++... +.. +++++||. +|.
T Consensus 59 ~~~~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~iv~~ss~--~g~ 135 (225)
T PRK08177 59 SLDQLLQRLQGQRFDLLFVNAGISGPAHQSAADATAAEIGQLFLTNAIAPIRLARRLLGQVRPGQG-VLAFMSSQ--LGS 135 (225)
T ss_pred HHHHHHHHhhcCCCCEEEEcCcccCCCCCCcccCCHHHHhhheeeeeeHHHHHHHHHHHhhhhcCC-EEEEEccC--ccc
Confidence 888887743 699999999975321 223344566778899999999999888643 223 78888873 332
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecC
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGV 300 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp 300 (479)
... .+......|+.+|++.+.+++.++.++ +++++.++||.+-.+
T Consensus 136 ~~~-------------------~~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~~i~v~~i~PG~i~t~ 183 (225)
T PRK08177 136 VEL-------------------PDGGEMPLYKASKAALNSMTRSFVAELGEPTLTVLSMHPGWVKTD 183 (225)
T ss_pred ccc-------------------CCCCCccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEcCCceecC
Confidence 210 011235579999999999999998774 689999999998665
|
|
| >PRK05599 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.8e-16 Score=147.71 Aligned_cols=173 Identities=14% Similarity=0.116 Sum_probs=122.4
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|++|||||+++||..++++|+ +|++|++++|.... +.+..+.+.+.....+.++.+|++|.++
T Consensus 1 ~~vlItGas~GIG~aia~~l~-~g~~Vil~~r~~~~----------------~~~~~~~l~~~~~~~~~~~~~Dv~d~~~ 63 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLC-HGEDVVLAARRPEA----------------AQGLASDLRQRGATSVHVLSFDAQDLDT 63 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHh-CCCEEEEEeCCHHH----------------HHHHHHHHHhccCCceEEEEcccCCHHH
Confidence 579999999999999999998 59999999875431 1122222222222357889999999998
Q ss_pred HHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccccccC
Q 011707 167 LSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 167 ~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~g~ 236 (479)
++++++.. ++|++|||||...... ...+..++..++++|+.+..+++..+ .+.+.+.+||++||...+-
T Consensus 64 v~~~~~~~~~~~g~id~lv~nag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~- 142 (246)
T PRK05599 64 HRELVKQTQELAGEISLAVVAFGILGDQERAETDEAHAVEIATVDYTAQVSMLTVLADELRAQTAPAAIVAFSSIAGWR- 142 (246)
T ss_pred HHHHHHHHHHhcCCCCEEEEecCcCCCchhhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCCCEEEEEecccccc-
Confidence 88776542 6999999999754322 12233334566788998887766554 3333223899999953221
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecC
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGV 300 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp 300 (479)
+......|+.+|++.+.+++.++.+. |++++.+.||.|..+
T Consensus 143 -----------------------~~~~~~~Y~asKaa~~~~~~~la~el~~~~I~v~~v~PG~v~T~ 186 (246)
T PRK05599 143 -----------------------ARRANYVYGSTKAGLDAFCQGLADSLHGSHVRLIIARPGFVIGS 186 (246)
T ss_pred -----------------------CCcCCcchhhHHHHHHHHHHHHHHHhcCCCceEEEecCCcccch
Confidence 11235689999999999999998874 799999999988654
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-16 Score=164.61 Aligned_cols=173 Identities=17% Similarity=0.117 Sum_probs=129.0
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.+++++++|||||+|+||..+++.|+++|++|+++++.... +.+...... .+...+.+|+
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~------------------~~l~~~~~~--~~~~~~~~Dv 265 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAG------------------EALAAVANR--VGGTALALDI 265 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccH------------------HHHHHHHHH--cCCeEEEEeC
Confidence 35578999999999999999999999999999998873221 011111110 1345788999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcCC---cceEEEeeccc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ---ECHLVKLGTMG 232 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~---~~~~V~~SS~~ 232 (479)
+|.++++++++.. ++|+||||||...... ...+++++..++++|+.|+.++.+++..... ..+||++||..
T Consensus 266 ~~~~~~~~~~~~~~~~~g~id~vi~~AG~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~g~iv~~SS~~ 345 (450)
T PRK08261 266 TAPDAPARIAEHLAERHGGLDIVVHNAGITRDKTLANMDEARWDSVLAVNLLAPLRITEALLAAGALGDGGRIVGVSSIS 345 (450)
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhhcCCCEEEEECChh
Confidence 9999888877643 5899999999764322 2235556778899999999999999876321 13899999854
Q ss_pred -cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeec
Q 011707 233 -EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYG 299 (479)
Q Consensus 233 -v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~G 299 (479)
+++.+ ....|+.+|+..+.+++.++.+ .|++++++.||.+--
T Consensus 346 ~~~g~~-------------------------~~~~Y~asKaal~~~~~~la~el~~~gi~v~~v~PG~i~t 391 (450)
T PRK08261 346 GIAGNR-------------------------GQTNYAASKAGVIGLVQALAPLLAERGITINAVAPGFIET 391 (450)
T ss_pred hcCCCC-------------------------CChHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeCcCcc
Confidence 33322 2578999999999999888776 489999999998743
|
|
| >TIGR01500 sepiapter_red sepiapterin reductase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-16 Score=152.24 Aligned_cols=173 Identities=12% Similarity=0.060 Sum_probs=124.8
Q ss_pred EEEEEcCCchhhHHHHHHHHh----CCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc-cCCCceeEEEcccC
Q 011707 88 RVMIIGGDGYCGWATALHLSN----KGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS-LTGKNIELYIGDIC 162 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~----~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~ 162 (479)
.+|||||+|+||.+++++|++ .|++|++++|..... .+..+.+.. ..+.++.++.+|++
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~v~~~~~Dl~ 65 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLSARNDEAL----------------RQLKAEIGAERSGLRVVRVSLDLG 65 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEEEcCHHHH----------------HHHHHHHHhcCCCceEEEEEeccC
Confidence 689999999999999999997 799999998754311 111222221 12346888999999
Q ss_pred ChHHHHHHhhhc---------CCCEEEEcccccCcc-ccc---ccccccchhhhhhHHHHHHHHHHHHHc-----CCcce
Q 011707 163 DFEFLSESFKSF---------EPDAVVHFGEQRSAP-YSM---IDRSRAVFTQHNNVIGTLNVLFAMKEF-----RQECH 224 (479)
Q Consensus 163 d~~~~~~~~~~~---------~~D~Vih~A~~~~~~-~~~---~~~~~~~~~~~~Nv~g~~~ll~~a~~~-----g~~~~ 224 (479)
|.++++++++.. +.|+||||||..... ... .+.+++..++++|+.|+..+.+++... +...+
T Consensus 66 ~~~~v~~~~~~~~~~~g~~~~~~~~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~~~l~~~~~~~~~ 145 (256)
T TIGR01500 66 AEAGLEQLLKALRELPRPKGLQRLLLINNAGTLGDVSKGFVDLSDSTQVQNYWALNLTSMLCLTSSVLKAFKDSPGLNRT 145 (256)
T ss_pred CHHHHHHHHHHHHhccccCCCceEEEEeCCcccCccccccccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhhcCCCCCE
Confidence 999888776532 136999999964321 111 234567788999999998888776432 22238
Q ss_pred EEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecC
Q 011707 225 LVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGV 300 (479)
Q Consensus 225 ~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp 300 (479)
||++||...+. +......|+.+|++.+.+++.++.++ |++++.+.||.|-.+
T Consensus 146 iv~isS~~~~~------------------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~v~PG~v~T~ 200 (256)
T TIGR01500 146 VVNISSLCAIQ------------------------PFKGWALYCAGKAARDMLFQVLALEEKNPNVRVLNYAPGVLDTD 200 (256)
T ss_pred EEEECCHHhCC------------------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCCcccch
Confidence 99999964331 22235789999999999999998874 799999999988654
|
This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs. |
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-16 Score=165.14 Aligned_cols=173 Identities=18% Similarity=0.184 Sum_probs=131.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|++|||||+++||.+++++|+++|++|++++|.... ++......+.++.++.+|++|+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~--------------------~~~~~~~~~~~~~~~~~D~~~~ 63 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVER--------------------ARERADSLGPDHHALAMDVSDE 63 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH--------------------HHHHHHHhCCceeEEEeccCCH
Confidence 57899999999999999999999999999999875431 1111111134677899999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCc---ccccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeeccc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSA---PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMG 232 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~---~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~ 232 (479)
++++++++.. ++|+||||||.... .....+.+++..++++|+.++..+++++... +.+.+||++||..
T Consensus 64 ~~~~~~~~~~~~~~g~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g~~iv~isS~~ 143 (520)
T PRK06484 64 AQIREGFEQLHREFGRIDVLVNNAGVTDPTMTATLDTTLEEFARLQAINLTGAYLVAREALRLMIEQGHGAAIVNVASGA 143 (520)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCcCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCeEEEECCcc
Confidence 9988887652 59999999997321 1223355677889999999999999888653 2223899999854
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCC
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVR 301 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~ 301 (479)
... +......|+.+|++.+.+++.++.++ +++++++.||.|..+.
T Consensus 144 ~~~------------------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~i~v~~i~Pg~v~t~~ 191 (520)
T PRK06484 144 GLV------------------------ALPKRTAYSASKAAVISLTRSLACEWAAKGIRVNAVLPGYVRTQM 191 (520)
T ss_pred cCC------------------------CCCCCchHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCcCchh
Confidence 321 11235789999999999999988874 7999999999886553
|
|
| >PRK09009 C factor cell-cell signaling protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-16 Score=145.26 Aligned_cols=213 Identities=14% Similarity=0.064 Sum_probs=144.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
|+|+||||+|+||++++++|+++| ..|+..++..... ....++.++++|++|.
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~~~~~~~~-------------------------~~~~~~~~~~~Dls~~ 55 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHATYRHHKPD-------------------------FQHDNVQWHALDVTDE 55 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEEccCCccc-------------------------cccCceEEEEecCCCH
Confidence 589999999999999999999986 4555544422100 1124688899999999
Q ss_pred HHHHHHhhhc-CCCEEEEcccccCccc-------ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeeccc
Q 011707 165 EFLSESFKSF-EPDAVVHFGEQRSAPY-------SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMG 232 (479)
Q Consensus 165 ~~~~~~~~~~-~~D~Vih~A~~~~~~~-------~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~ 232 (479)
++++++.+.. ++|+||||||...... ...+.+++...+++|+.++..+++.+... +.+ +++++||..
T Consensus 56 ~~~~~~~~~~~~id~li~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~~-~i~~iss~~ 134 (235)
T PRK09009 56 AEIKQLSEQFTQLDWLINCVGMLHTQDKGPEKSLQALDADFFLQNITLNTLPSLLLAKHFTPKLKQSESA-KFAVISAKV 134 (235)
T ss_pred HHHHHHHHhcCCCCEEEECCccccccccCcccccccCCHHHHHHHHHHHhHHHHHHHHHHHhhccccCCc-eEEEEeecc
Confidence 9888876644 6899999999754211 11233445678899999999888877542 334 899998731
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-----CCceEEeecCeeecCCCCchhh
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-----GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
+... + .+..+...|+.+|++.+.+++.++.+. +++++.+.||.+..+...+
T Consensus 135 --~~~~----~---------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~~i~v~~v~PG~v~t~~~~~--- 190 (235)
T PRK09009 135 --GSIS----D---------------NRLGGWYSYRASKAALNMFLKTLSIEWQRSLKHGVVLALHPGTTDTALSKP--- 190 (235)
T ss_pred --cccc----c---------------CCCCCcchhhhhHHHHHHHHHHHHHHhhcccCCeEEEEEcccceecCCCcc---
Confidence 2110 0 011235689999999999999998763 7889999999987664210
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQ 382 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~ 382 (479)
.... .....+...+|++++++.++........+..+.+.++.
T Consensus 191 ------------------------~~~~---------~~~~~~~~~~~~a~~~~~l~~~~~~~~~g~~~~~~g~~ 232 (235)
T PRK09009 191 ------------------------FQQN---------VPKGKLFTPEYVAQCLLGIIANATPAQSGSFLAYDGET 232 (235)
T ss_pred ------------------------hhhc---------cccCCCCCHHHHHHHHHHHHHcCChhhCCcEEeeCCcC
Confidence 0000 11223678999999999999875432222266555443
|
|
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.5e-16 Score=145.84 Aligned_cols=207 Identities=17% Similarity=0.137 Sum_probs=151.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
...|+.||||||.+++|+.++.+++++|..+.+.|.+..+.. +..+...+. ..+..+.+|++
T Consensus 35 ~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~----------------etv~~~~~~--g~~~~y~cdis 96 (300)
T KOG1201|consen 35 SVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNE----------------ETVKEIRKI--GEAKAYTCDIS 96 (300)
T ss_pred hccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchH----------------HHHHHHHhc--CceeEEEecCC
Confidence 446899999999999999999999999999999998776532 233333332 27889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccccc-cccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecc-
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMI-DRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTM- 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~-~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~- 231 (479)
+.+++.+..++. .+|++|||||++....-.. +.++.++++++|+.|.+...++. .+.+.+ +||.++|.
T Consensus 97 ~~eei~~~a~~Vk~e~G~V~ILVNNAGI~~~~~ll~~~d~ei~k~~~vN~~~~f~t~kaFLP~M~~~~~G-HIV~IaS~a 175 (300)
T KOG1201|consen 97 DREEIYRLAKKVKKEVGDVDILVNNAGIVTGKKLLDCSDEEIQKTFDVNTIAHFWTTKAFLPKMLENNNG-HIVTIASVA 175 (300)
T ss_pred CHHHHHHHHHHHHHhcCCceEEEeccccccCCCccCCCHHHHHHHHHHhhHHHHHHHHHHhHHHHhcCCc-eEEEehhhh
Confidence 999888776643 5999999999987654443 44566788999999987766554 444445 99999994
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh------CCceEEeecCeeecCCCCch
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW------GIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~------gl~~~ivRp~~v~Gp~~~~~ 305 (479)
+..|. .....|+.||.++.-+.+.+..|. |++++.+-|+.+= .+
T Consensus 176 G~~g~-------------------------~gl~~YcaSK~a~vGfhesL~~EL~~~~~~~IktTlv~P~~i~-Tg---- 225 (300)
T KOG1201|consen 176 GLFGP-------------------------AGLADYCASKFAAVGFHESLSMELRALGKDGIKTTLVCPYFIN-TG---- 225 (300)
T ss_pred cccCC-------------------------ccchhhhhhHHHHHHHHHHHHHHHHhcCCCCeeEEEEeeeecc-cc----
Confidence 33332 337889999999999988887663 6888888876653 11
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
++ .+ ..+ -......+..+.+|+.++.+++....
T Consensus 226 ----------------------mf----~~-~~~----~~~l~P~L~p~~va~~Iv~ai~~n~~ 258 (300)
T KOG1201|consen 226 ----------------------MF----DG-ATP----FPTLAPLLEPEYVAKRIVEAILTNQA 258 (300)
T ss_pred ----------------------cc----CC-CCC----CccccCCCCHHHHHHHHHHHHHcCCc
Confidence 11 11 000 12345668899999999999986443
|
|
| >TIGR01289 LPOR light-dependent protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.6e-16 Score=153.16 Aligned_cols=198 Identities=14% Similarity=0.127 Sum_probs=131.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++|++|||||+++||.+++++|+++| ++|++++|..... .+..+.+. ..+..+.++.+|++|
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~~~~----------------~~~~~~l~-~~~~~~~~~~~Dl~~ 64 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDFLKA----------------EQAAKSLG-MPKDSYTIMHLDLGS 64 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCHHHH----------------HHHHHHhc-CCCCeEEEEEcCCCC
Confidence 36799999999999999999999999 9999988754321 11111111 123467888999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHHH----cCC-cceEEEeecc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQ-ECHLVKLGTM 231 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~-~~~~V~~SS~ 231 (479)
.++++++++.. ++|++|||||..... ....+++++..++++|+.|+..+++++.. .+. ..+||++||.
T Consensus 65 ~~~v~~~~~~~~~~~~~iD~lI~nAG~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~l~~m~~~~~~~g~IV~vsS~ 144 (314)
T TIGR01289 65 LDSVRQFVQQFRESGRPLDALVCNAAVYFPTAKEPRFTADGFELSVGTNHLGHFLLCNLLLDDLKNSPNKDKRLIIVGSI 144 (314)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCccccCccccccCHHHHHHHHhhhhhHHHHHHHHHHHHHHhCCCCCCeEEEEecC
Confidence 99888777542 599999999974321 12235566788899999999888776643 321 1399999997
Q ss_pred ccccCCCC-----CCcCCceeecCCCCC----CCCCCCCCCCchhhhhhHHHHHHHHHHHHHh----CCceEEeecCeee
Q 011707 232 GEYGTPNI-----DIEEGYITINHNGRT----DTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQGVVY 298 (479)
Q Consensus 232 ~v~g~~~~-----~~~e~~~~~~~~~~~----~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gl~~~ivRp~~v~ 298 (479)
..+..... +....+......+.. -....+..+...|+.||++...+++.++++. |+.++.++||.|.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 224 (314)
T TIGR01289 145 TGNTNTLAGNVPPKANLGDLSGLAAGFKAPIAMIDGKEFKGAKAYKDSKVCNMLTVRELHRRFHDETGITFASLYPGCIA 224 (314)
T ss_pred ccccccCCCcCCCcccccccccccccCCCcccccCCCCcchhhhHHHhHHHHHHHHHHHHHHhccCCCeEEEEecCCccc
Confidence 65432110 001010000000000 0000123456789999999999888887763 7999999999985
Q ss_pred c
Q 011707 299 G 299 (479)
Q Consensus 299 G 299 (479)
.
T Consensus 225 ~ 225 (314)
T TIGR01289 225 D 225 (314)
T ss_pred C
Confidence 3
|
This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form. |
| >PRK08303 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.5e-16 Score=151.61 Aligned_cols=187 Identities=14% Similarity=0.059 Sum_probs=128.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+++||.+++++|++.|++|++++|........ ......+.+..+.+.. .+.++.++.+|++|
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~------~~~~~~~~~~~~~l~~-~~~~~~~~~~Dv~~ 78 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSE------YDRPETIEETAELVTA-AGGRGIAVQVDHLV 78 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeccccccccc------ccccchHHHHHHHHHh-cCCceEEEEcCCCC
Confidence 5689999999999999999999999999999998754211000 0000011111112211 13457789999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcc-cccC-----cccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEe
Q 011707 164 FEFLSESFKSF-----EPDAVVHFG-EQRS-----APYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKL 228 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A-~~~~-----~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~ 228 (479)
+++++++++.. ++|++|||| |... .+....+.+++.+++++|+.++..+++++.. .+.+ +||++
T Consensus 79 ~~~v~~~~~~~~~~~g~iDilVnnA~g~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~lp~m~~~~~g-~IV~i 157 (305)
T PRK08303 79 PEQVRALVERIDREQGRLDILVNDIWGGEKLFEWGKPVWEHSLDKGLRMLRLAIDTHLITSHFALPLLIRRPGG-LVVEI 157 (305)
T ss_pred HHHHHHHHHHHHHHcCCccEEEECCcccccccccCCchhhcCHHHHHHHHHHhhHHHHHHHHHHHHHhhhCCCc-EEEEE
Confidence 99888877643 699999999 7421 1112224456777899999999998877754 2234 89999
Q ss_pred ecccc-ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecC
Q 011707 229 GTMGE-YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGV 300 (479)
Q Consensus 229 SS~~v-~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp 300 (479)
||... ++.. +......|+.+|++...+++.++.++ |++++.|.||.|--+
T Consensus 158 sS~~~~~~~~----------------------~~~~~~~Y~asKaal~~lt~~La~el~~~gIrVn~v~PG~v~T~ 211 (305)
T PRK08303 158 TDGTAEYNAT----------------------HYRLSVFYDLAKTSVNRLAFSLAHELAPHGATAVALTPGWLRSE 211 (305)
T ss_pred CCccccccCc----------------------CCCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEecCCccccH
Confidence 98432 2110 11124579999999999999998875 799999999887443
|
|
| >PRK12367 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.7e-16 Score=144.76 Aligned_cols=163 Identities=16% Similarity=0.051 Sum_probs=111.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+... ......+.+|++
T Consensus 11 ~l~~k~~lITGas~gIG~ala~~l~~~G~~Vi~~~r~~~~~-------------------~~~~~---~~~~~~~~~D~~ 68 (245)
T PRK12367 11 TWQGKRIGITGASGALGKALTKAFRAKGAKVIGLTHSKINN-------------------SESND---ESPNEWIKWECG 68 (245)
T ss_pred hhCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEECCchhh-------------------hhhhc---cCCCeEEEeeCC
Confidence 34689999999999999999999999999999988754210 00000 012256789999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc------CCcceEEEeeccccccC
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF------RQECHLVKLGTMGEYGT 236 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~------g~~~~~V~~SS~~v~g~ 236 (479)
|.+++.+.+. ++|++|||||..... ..+.+++...+++|+.|+.++++++... +.+..++..||.+...
T Consensus 69 ~~~~~~~~~~--~iDilVnnAG~~~~~--~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~g~~iiv~ss~a~~~- 143 (245)
T PRK12367 69 KEESLDKQLA--SLDVLILNHGINPGG--RQDPENINKALEINALSSWRLLELFEDIALNNNSQIPKEIWVNTSEAEIQ- 143 (245)
T ss_pred CHHHHHHhcC--CCCEEEECCccCCcC--CCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccCCCeEEEEEecccccC-
Confidence 9999988887 799999999974322 2345567888999999999999987542 1121343334432111
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHH----H---hCCceEEeecCee
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCK----A---WGIRATDLNQGVV 297 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~----~---~gl~~~ivRp~~v 297 (479)
+ .....|+.||++.+.+. .+.+ + .++.+..+.||.+
T Consensus 144 -----------------------~-~~~~~Y~aSKaal~~~~-~l~~~l~~e~~~~~i~v~~~~pg~~ 186 (245)
T PRK12367 144 -----------------------P-ALSPSYEISKRLIGQLV-SLKKNLLDKNERKKLIIRKLILGPF 186 (245)
T ss_pred -----------------------C-CCCchhHHHHHHHHHHH-HHHHHHHHhhcccccEEEEecCCCc
Confidence 1 12457999999976543 3333 2 3677777776554
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.4e-16 Score=143.30 Aligned_cols=173 Identities=13% Similarity=0.076 Sum_probs=126.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+++||||++.||..++++|+++|++|++++|..... .+..+..... +..+..+.+|++|
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l----------------~~~~~~i~~~-~~~~~~~~~D~~~ 65 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSAL----------------KDTYEQCSAL-TDNVYSFQLKDFS 65 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHH----------------HHHHHHHHhc-CCCeEEEEccCCC
Confidence 4689999999999999999999999999999988754321 1111222221 3457788899999
Q ss_pred hHHHHHHhhhc------CCCEEEEcccccCccc--ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc
Q 011707 164 FEFLSESFKSF------EPDAVVHFGEQRSAPY--SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM 231 (479)
Q Consensus 164 ~~~~~~~~~~~------~~D~Vih~A~~~~~~~--~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~ 231 (479)
+++++++++.. ++|++|||||...... ...+.+++.+.+++|+.++..+++.+. +.+.+..||++||.
T Consensus 66 ~~~~~~~~~~~~~~~g~~iD~li~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~~~~g~Iv~isS~ 145 (227)
T PRK08862 66 QESIRHLFDAIEQQFNRAPDVLVNNWTSSPLPSLFDEQPSESFIQQLSSLASTLFTYGQVAAERMRKRNKKGVIVNVISH 145 (227)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEECCccCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 99888776532 5899999998543221 122334566678889998887766553 33322389999984
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecC
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGV 300 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp 300 (479)
..+ .....|+.+|++.+.+++.++.+ +|++++.|.||.+-.+
T Consensus 146 ~~~---------------------------~~~~~Y~asKaal~~~~~~la~el~~~~Irvn~v~PG~i~t~ 190 (227)
T PRK08862 146 DDH---------------------------QDLTGVESSNALVSGFTHSWAKELTPFNIRVGGVVPSIFSAN 190 (227)
T ss_pred CCC---------------------------CCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcCcCC
Confidence 311 12467999999999999998886 4799999999988766
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.3e-15 Score=142.72 Aligned_cols=223 Identities=19% Similarity=0.227 Sum_probs=164.1
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
++||||||||++|++++++|+++|++|+++.|.... ...+. ..+.++.+|+.++..
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~--------------------~~~~~----~~v~~~~~d~~~~~~ 56 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLARGHEVRAAVRNPEA--------------------AAALA----GGVEVVLGDLRDPKS 56 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhCCCEEEEEEeCHHH--------------------HHhhc----CCcEEEEeccCCHhH
Confidence 579999999999999999999999999999886542 12221 579999999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCce
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYI 246 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~~ 246 (479)
+..+++ +.|.++++.+... ... . .......+..+..+.+. .+.. +++++|......
T Consensus 57 l~~a~~--G~~~~~~i~~~~~-~~~-~-------~~~~~~~~~~~~a~~a~-~~~~-~~~~~s~~~~~~----------- 112 (275)
T COG0702 57 LVAGAK--GVDGVLLISGLLD-GSD-A-------FRAVQVTAVVRAAEAAG-AGVK-HGVSLSVLGADA----------- 112 (275)
T ss_pred HHHHhc--cccEEEEEecccc-ccc-c-------hhHHHHHHHHHHHHHhc-CCce-EEEEeccCCCCC-----------
Confidence 999999 8999999987533 211 1 11334444444444444 3455 888888754321
Q ss_pred eecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHH
Q 011707 247 TINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~ 326 (479)
.....|..+|..+|..+. ..|++++++|+..+|...... .
T Consensus 113 ---------------~~~~~~~~~~~~~e~~l~----~sg~~~t~lr~~~~~~~~~~~--------------------~- 152 (275)
T COG0702 113 ---------------ASPSALARAKAAVEAALR----SSGIPYTTLRRAAFYLGAGAA--------------------F- 152 (275)
T ss_pred ---------------CCccHHHHHHHHHHHHHH----hcCCCeEEEecCeeeeccchh--------------------H-
Confidence 235789999999999774 469999999977666554210 1
Q ss_pred HHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCccee
Q 011707 327 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVKT 405 (479)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~~~ 405 (479)
.......+.++...+. ....++.++|++.++..++..+...++ +|.+++ +..+..++.+.+.+. .|.+...
T Consensus 153 -~~~~~~~~~~~~~~~~--~~~~~i~~~d~a~~~~~~l~~~~~~~~--~~~l~g~~~~~~~~~~~~l~~~---~gr~~~~ 224 (275)
T COG0702 153 -IEAAEAAGLPVIPRGI--GRLSPIAVDDVAEALAAALDAPATAGR--TYELAGPEALTLAELASGLDYT---IGRPVGL 224 (275)
T ss_pred -HHHHHhhCCceecCCC--CceeeeEHHHHHHHHHHHhcCCcccCc--EEEccCCceecHHHHHHHHHHH---hCCccee
Confidence 1222334444433333 367899999999999999998876665 999999 689999999999998 8888776
|
|
| >KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.2e-15 Score=144.87 Aligned_cols=179 Identities=18% Similarity=0.183 Sum_probs=135.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc--cCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS--LTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~D 160 (479)
.+.+|++|||||+.+||++++++|++.|++|++.+|..... .+....+.. ..+.++..+.+|
T Consensus 5 ~l~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~D 68 (270)
T KOG0725|consen 5 RLAGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERL----------------EETAQELGGLGYTGGKVLAIVCD 68 (270)
T ss_pred cCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHhcCCCCCeeEEEECc
Confidence 56799999999999999999999999999999999875531 112222221 123578999999
Q ss_pred cCChHHHHHHhhhc------CCCEEEEcccccCcc--cccccccccchhhhhhHHH-HHHHHHHHHHc----CCcceEEE
Q 011707 161 ICDFEFLSESFKSF------EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIG-TLNVLFAMKEF----RQECHLVK 227 (479)
Q Consensus 161 l~d~~~~~~~~~~~------~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g-~~~ll~~a~~~----g~~~~~V~ 227 (479)
+++.++.+++++.. ++|++|||||..... ....++++|+.++++|+.| ..++.+++..+ +.. .+++
T Consensus 69 v~~~~~~~~l~~~~~~~~~GkidiLvnnag~~~~~~~~~~~s~e~~d~~~~~Nl~G~~~~~~~~a~~~~~~~~gg-~I~~ 147 (270)
T KOG0725|consen 69 VSKEVDVEKLVEFAVEKFFGKIDILVNNAGALGLTGSILDLSEEVFDKIMATNLRGSAFCLKQAARPMLKKSKGG-SIVN 147 (270)
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCEEEEcCCcCCCCCChhhCCHHHHHHHHhhhchhHHHHHHHHHHHHHHhcCCc-eEEE
Confidence 99987766655422 699999999986544 3445778899999999995 77776766442 333 8888
Q ss_pred eeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCC
Q 011707 228 LGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVR 301 (479)
Q Consensus 228 ~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~ 301 (479)
+||..-+... +.. ...|+.+|.+.+++.+.++.++ |++++++-||.|..+.
T Consensus 148 ~ss~~~~~~~----------------------~~~-~~~Y~~sK~al~~ltr~lA~El~~~gIRvN~v~PG~i~T~~ 201 (270)
T KOG0725|consen 148 ISSVAGVGPG----------------------PGS-GVAYGVSKAALLQLTRSLAKELAKHGIRVNSVSPGLVKTSL 201 (270)
T ss_pred EeccccccCC----------------------CCC-cccchhHHHHHHHHHHHHHHHHhhcCcEEEEeecCcEeCCc
Confidence 8886433211 111 1789999999999999999885 8999999999998874
|
|
| >PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-15 Score=150.34 Aligned_cols=162 Identities=15% Similarity=0.065 Sum_probs=111.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+|+||||+|+||++++++|+++|++|+++++..... .+. ... ....+..+.+|++
T Consensus 175 sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~r~~~~l----------------~~~---~~~-~~~~v~~v~~Dvs 234 (406)
T PRK07424 175 SLKGKTVAVTGASGTLGQALLKELHQQGAKVVALTSNSDKI----------------TLE---ING-EDLPVKTLHWQVG 234 (406)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHH---Hhh-cCCCeEEEEeeCC
Confidence 45789999999999999999999999999999998754211 000 000 1124678899999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc----CC---cceEEEeecccccc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQ---ECHLVKLGTMGEYG 235 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~---~~~~V~~SS~~v~g 235 (479)
|.+++.+.+. ++|++|||||..... ..+.+++..++++|+.|+.++++++... +. +..+|++|++...
T Consensus 235 d~~~v~~~l~--~IDiLInnAGi~~~~--~~s~e~~~~~~~vNv~g~i~Li~a~lp~m~~~~~~~~~~iiVn~Ssa~~~- 309 (406)
T PRK07424 235 QEAALAELLE--KVDILIINHGINVHG--ERTPEAINKSYEVNTFSAWRLMELFFTTVKTNRDKATKEVWVNTSEAEVN- 309 (406)
T ss_pred CHHHHHHHhC--CCCEEEECCCcCCCC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEcccccc-
Confidence 9999999887 899999999964322 2344566788999999999999987532 21 1145665543211
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeec
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQ 294 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp 294 (479)
+ .....|++||++.+.+......+.++.+..+.|
T Consensus 310 ------------------------~-~~~~~Y~ASKaAl~~l~~l~~~~~~~~I~~i~~ 343 (406)
T PRK07424 310 ------------------------P-AFSPLYELSKRALGDLVTLRRLDAPCVVRKLIL 343 (406)
T ss_pred ------------------------C-CCchHHHHHHHHHHHHHHHHHhCCCCceEEEEe
Confidence 1 123579999999998764322223443443333
|
|
| >PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=134.84 Aligned_cols=159 Identities=16% Similarity=0.112 Sum_probs=119.7
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
|++|||||+|.||..++++|+++|. .|+++.|..+.. ...+....+. ..+.++.++++|+++.+
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~--------------~~~~l~~~l~-~~~~~~~~~~~D~~~~~ 65 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRSEDSE--------------GAQELIQELK-APGAKITFIECDLSDPE 65 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHH--------------HHHHHHHHHH-HTTSEEEEEESETTSHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeeccccc--------------cccccccccc-ccccccccccccccccc
Confidence 6899999999999999999999965 667777651100 0111112222 22368999999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI 239 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~ 239 (479)
+++++++.. .+|+||||||....... ..+++++.+++++|+.+...+.+++...+.+ +||++||....-
T Consensus 66 ~~~~~~~~~~~~~~~ld~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~g-~iv~~sS~~~~~---- 140 (167)
T PF00106_consen 66 SIRALIEEVIKRFGPLDILINNAGIFSDGSLDDLSEEELERVFRVNLFGPFLLAKALLPQGGG-KIVNISSIAGVR---- 140 (167)
T ss_dssp HHHHHHHHHHHHHSSESEEEEECSCTTSBSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHTTE-EEEEEEEGGGTS----
T ss_pred cccccccccccccccccccccccccccccccccccchhhhhccccccceeeeeeehheecccc-ceEEecchhhcc----
Confidence 888887654 68999999998763322 2245678899999999999999999885544 999999954331
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW 285 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~ 285 (479)
+......|+.+|++.+.+++.+++|+
T Consensus 141 --------------------~~~~~~~Y~askaal~~~~~~la~e~ 166 (167)
T PF00106_consen 141 --------------------GSPGMSAYSASKAALRGLTQSLAAEL 166 (167)
T ss_dssp --------------------SSTTBHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCCCChhHHHHHHHHHHHHHHHHHhc
Confidence 22347899999999999999998873
|
As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A .... |
| >PLN02730 enoyl-[acyl-carrier-protein] reductase | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.4e-14 Score=139.96 Aligned_cols=239 Identities=15% Similarity=0.098 Sum_probs=146.2
Q ss_pred CCCCcEEEEEcC--CchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCC----CceeE
Q 011707 83 PSKAKRVMIIGG--DGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTG----KNIEL 156 (479)
Q Consensus 83 ~~~~~~vLVtGa--tG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~ 156 (479)
.+++|++||||| +++||.++++.|++.|++|++ .+.............. ..+........ .....
T Consensus 6 ~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~-~~~~~~l~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~ 76 (303)
T PLN02730 6 DLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV-GTWVPALNIFETSLRR--------GKFDESRKLPDGSLMEITKV 76 (303)
T ss_pred CCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE-EeCcchhhHHHHhhhc--------cccchhhhcccccccCcCee
Confidence 368999999999 899999999999999999987 4432211000000000 00000000111 12456
Q ss_pred EEccc--CChH------------------HHHHHhhhc-----CCCEEEEcccccC---cccccccccccchhhhhhHHH
Q 011707 157 YIGDI--CDFE------------------FLSESFKSF-----EPDAVVHFGEQRS---APYSMIDRSRAVFTQHNNVIG 208 (479)
Q Consensus 157 v~~Dl--~d~~------------------~~~~~~~~~-----~~D~Vih~A~~~~---~~~~~~~~~~~~~~~~~Nv~g 208 (479)
+.+|+ ++++ +++++++.. ++|++|||||... .+....+.+++.+++++|+.+
T Consensus 77 ~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~i~~~~G~iDiLVnNAG~~~~~~~~~~~~~~e~~~~~~~vN~~~ 156 (303)
T PLN02730 77 YPLDAVFDTPEDVPEDVKTNKRYAGSSNWTVQEVAESVKADFGSIDILVHSLANGPEVTKPLLETSRKGYLAAISASSYS 156 (303)
T ss_pred eecceecCccccCchhhhcccccccCCHHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHHhHH
Confidence 78888 3333 566665532 5899999997532 123334567889999999999
Q ss_pred HHHHHHHHHHc--CCcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCC-chhhhhhHHHHHHHHHHHHHh
Q 011707 209 TLNVLFAMKEF--RQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS-SFYHLSKVHDSHNIAFTCKAW 285 (479)
Q Consensus 209 ~~~ll~~a~~~--g~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~~ 285 (479)
+..+++++... ..+ +||++||..... +.... ..|+.||++.+.+.+.++.++
T Consensus 157 ~~~l~~~~~p~m~~~G-~II~isS~a~~~------------------------~~p~~~~~Y~asKaAl~~l~~~la~El 211 (303)
T PLN02730 157 FVSLLQHFGPIMNPGG-ASISLTYIASER------------------------IIPGYGGGMSSAKAALESDTRVLAFEA 211 (303)
T ss_pred HHHHHHHHHHHHhcCC-EEEEEechhhcC------------------------CCCCCchhhHHHHHHHHHHHHHHHHHh
Confidence 99999887553 123 899999853221 11112 479999999999999999874
Q ss_pred ----CCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHH
Q 011707 286 ----GIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVE 361 (479)
Q Consensus 286 ----gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~ 361 (479)
|++++.|-||.|--+.... . .. ............+ ...+...+|++.+++
T Consensus 212 ~~~~gIrVn~V~PG~v~T~~~~~-~---------------~~-~~~~~~~~~~~~p---------l~r~~~peevA~~~~ 265 (303)
T PLN02730 212 GRKYKIRVNTISAGPLGSRAAKA-I---------------GF-IDDMIEYSYANAP---------LQKELTADEVGNAAA 265 (303)
T ss_pred CcCCCeEEEEEeeCCccCchhhc-c---------------cc-cHHHHHHHHhcCC---------CCCCcCHHHHHHHHH
Confidence 6899999999886553110 0 00 0111111111111 123467899999999
Q ss_pred HHHhCCCCCCCceEEEeCCC
Q 011707 362 LAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 362 ~~~~~~~~~g~~~~~ni~~~ 381 (479)
.++......-..+++.+.++
T Consensus 266 fLaS~~a~~itG~~l~vdGG 285 (303)
T PLN02730 266 FLASPLASAITGATIYVDNG 285 (303)
T ss_pred HHhCccccCccCCEEEECCC
Confidence 99975433212236666543
|
|
| >smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-15 Score=133.38 Aligned_cols=171 Identities=18% Similarity=0.211 Sum_probs=123.4
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
++++||||+|+||.+++++|+++|+ .|+++.|....... .....+.+.. .+.++.++.+|+++++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~-------------~~~~~~~~~~-~~~~~~~~~~D~~~~~ 66 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPG-------------AAELLAELEA-LGAEVTVVACDVADRA 66 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCcc-------------HHHHHHHHHh-cCCeEEEEECCCCCHH
Confidence 5799999999999999999999996 67777664321100 0000111111 2346788999999998
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecc-ccccCCC
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTM-GEYGTPN 238 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~-~v~g~~~ 238 (479)
++++++... .+|+|||+||...... ...+.+++..++++|+.++.++++++++.+.+ ++|++||. +.++.
T Consensus 67 ~~~~~~~~~~~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~ii~~ss~~~~~~~-- 143 (180)
T smart00822 67 ALAAALAAIPARLGPLRGVIHAAGVLDDGLLANLTPERFAAVLAPKVDGAWNLHELTRDLPLD-FFVLFSSVAGVLGN-- 143 (180)
T ss_pred HHHHHHHHHHHHcCCeeEEEEccccCCccccccCCHHHHHHhhchHhHHHHHHHHHhccCCcc-eEEEEccHHHhcCC--
Confidence 888876643 4799999999754322 23344556778999999999999999887766 89999884 33332
Q ss_pred CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeee
Q 011707 239 IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVY 298 (479)
Q Consensus 239 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~ 298 (479)
.....|+.+|...+.+++.+ +..+++++++.||.+-
T Consensus 144 -----------------------~~~~~y~~sk~~~~~~~~~~-~~~~~~~~~~~~g~~~ 179 (180)
T smart00822 144 -----------------------PGQANYAAANAFLDALAAHR-RARGLPATSINWGAWA 179 (180)
T ss_pred -----------------------CCchhhHHHHHHHHHHHHHH-HhcCCceEEEeecccc
Confidence 22568999999999999654 4569999999887654
|
It uses NADPH to reduce the keto group to a hydroxy group. |
| >PLN00015 protochlorophyllide reductase | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-15 Score=146.44 Aligned_cols=190 Identities=15% Similarity=0.159 Sum_probs=124.5
Q ss_pred EEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHHH
Q 011707 90 MIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLS 168 (479)
Q Consensus 90 LVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~~ 168 (479)
|||||+++||.+++++|+++| ++|++++|..... .+..+.+. ..+.++.++.+|++|.++++
T Consensus 1 lITGas~GIG~aia~~l~~~G~~~V~~~~r~~~~~----------------~~~~~~l~-~~~~~~~~~~~Dl~d~~~v~ 63 (308)
T PLN00015 1 IITGASSGLGLATAKALAETGKWHVVMACRDFLKA----------------ERAAKSAG-MPKDSYTVMHLDLASLDSVR 63 (308)
T ss_pred CEeCCCChHHHHHHHHHHHCCCCEEEEEeCCHHHH----------------HHHHHHhc-CCCCeEEEEEecCCCHHHHH
Confidence 699999999999999999999 9999988753311 11111111 11246788899999999988
Q ss_pred HHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHH----cC--CcceEEEeecccccc
Q 011707 169 ESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FR--QECHLVKLGTMGEYG 235 (479)
Q Consensus 169 ~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g--~~~~~V~~SS~~v~g 235 (479)
++++.. ++|++|||||.... .....+.+++..++++|+.|+.++++++.. .+ .+ +||++||...+-
T Consensus 64 ~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~l~~~~~~~g-~IV~vsS~~~~~ 142 (308)
T PLN00015 64 QFVDNFRRSGRPLDVLVCNAAVYLPTAKEPTFTADGFELSVGTNHLGHFLLSRLLLDDLKKSDYPSK-RLIIVGSITGNT 142 (308)
T ss_pred HHHHHHHhcCCCCCEEEECCCcCCCCCCcCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCCC-EEEEEecccccc
Confidence 877642 58999999997532 122335567788999999998888776643 22 24 999999964331
Q ss_pred CCC-C--C--CcCCcee-----ec-CCC--CCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh----CCceEEeecCeee
Q 011707 236 TPN-I--D--IEEGYIT-----IN-HNG--RTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQGVVY 298 (479)
Q Consensus 236 ~~~-~--~--~~e~~~~-----~~-~~~--~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gl~~~ivRp~~v~ 298 (479)
... . + ...+... .. .+. ..+. ....+...|+.||++.+.+++.+++++ |+.++.+.||.|.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~aY~~SK~a~~~~~~~la~~~~~~~gi~v~~v~PG~v~ 220 (308)
T PLN00015 143 NTLAGNVPPKANLGDLRGLAGGLNGLNSSAMIDG--GEFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIA 220 (308)
T ss_pred ccccccCCCccchhhhhhhhcccCCccchhhccc--cCCcHHHHHhHhHHHHHHHHHHHHHhhcccCCeEEEEecCCccc
Confidence 100 0 0 0000000 00 000 0000 012346789999999888878887763 7999999999995
Q ss_pred c
Q 011707 299 G 299 (479)
Q Consensus 299 G 299 (479)
.
T Consensus 221 ~ 221 (308)
T PLN00015 221 T 221 (308)
T ss_pred C
Confidence 4
|
|
| >KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-15 Score=126.87 Aligned_cols=217 Identities=16% Similarity=0.141 Sum_probs=156.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+.|+.|+|||+.-+||+.+++.|.+.|.+|+++.|..... ..+-.....-++.+.+|+.
T Consensus 4 ~laG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L--------------------~sLV~e~p~~I~Pi~~Dls 63 (245)
T KOG1207|consen 4 SLAGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANL--------------------LSLVKETPSLIIPIVGDLS 63 (245)
T ss_pred cccceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHH--------------------HHHHhhCCcceeeeEeccc
Confidence 35689999999999999999999999999999998865421 1111222335889999999
Q ss_pred ChHHHHHHhhhc-CCCEEEEcccccCc-ccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccccccC
Q 011707 163 DFEFLSESFKSF-EPDAVVHFGEQRSA-PYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 163 d~~~~~~~~~~~-~~D~Vih~A~~~~~-~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~g~ 236 (479)
+.+.+.+++..+ .+|.++||||+.-. +..+-..+++++.|++|+.+..++.+... ..+++..||.+||.+-.
T Consensus 64 ~wea~~~~l~~v~pidgLVNNAgvA~~~pf~eiT~q~fDr~F~VNvravi~v~Q~var~lv~R~~~GaIVNvSSqas~-- 141 (245)
T KOG1207|consen 64 AWEALFKLLVPVFPIDGLVNNAGVATNHPFGEITQQSFDRTFAVNVRAVILVAQLVARNLVDRQIKGAIVNVSSQASI-- 141 (245)
T ss_pred HHHHHHHhhcccCchhhhhccchhhhcchHHHHhHHhhcceeeeeeeeeeeHHHHHHHhhhhccCCceEEEecchhcc--
Confidence 999888887654 58999999997643 33344666788999999999999988743 34555589999995422
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
.+....+.|+.+|++...+.+.++-+. +|+++.+.|..|.-.....++
T Consensus 142 ----------------------R~~~nHtvYcatKaALDmlTk~lAlELGp~kIRVNsVNPTVVmT~MG~dnW------- 192 (245)
T KOG1207|consen 142 ----------------------RPLDNHTVYCATKAALDMLTKCLALELGPQKIRVNSVNPTVVMTDMGRDNW------- 192 (245)
T ss_pred ----------------------cccCCceEEeecHHHHHHHHHHHHHhhCcceeEeeccCCeEEEeccccccc-------
Confidence 133446899999999999999999886 489999999988654322111
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
.+| ..++ + +. +.-..--|.-|+.+++|++.++.....
T Consensus 193 -SDP--------------~K~k-~--mL-~riPl~rFaEV~eVVnA~lfLLSd~ss 229 (245)
T KOG1207|consen 193 -SDP--------------DKKK-K--ML-DRIPLKRFAEVDEVVNAVLFLLSDNSS 229 (245)
T ss_pred -CCc--------------hhcc-c--hh-hhCchhhhhHHHHHHhhheeeeecCcC
Confidence 000 1111 1 10 112234688999999999998876443
|
|
| >KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-15 Score=132.58 Aligned_cols=166 Identities=17% Similarity=0.179 Sum_probs=124.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~ 162 (479)
.+||++++||+.|+||..+.++|+.+|..+.+++.+.. ..+...+++.. ....+.++++|++
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~~~E-----------------n~~a~akL~ai~p~~~v~F~~~DVt 65 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDDSEE-----------------NPEAIAKLQAINPSVSVIFIKCDVT 65 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehhhhh-----------------CHHHHHHHhccCCCceEEEEEeccc
Confidence 46999999999999999999999999998877654322 12344444433 3358999999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHH----HH--cCCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAM----KE--FRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~--~g~~~~~V~~SS~ 231 (479)
+..++++++++. .+|++||+||+.. ..++++++.+|+.|..+-...+ .+ .|.+..+|++||.
T Consensus 66 ~~~~~~~~f~ki~~~fg~iDIlINgAGi~~-------dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiIvNmsSv 138 (261)
T KOG4169|consen 66 NRGDLEAAFDKILATFGTIDILINGAGILD-------DKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGIIVNMSSV 138 (261)
T ss_pred cHHHHHHHHHHHHHHhCceEEEEccccccc-------chhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEEEEeccc
Confidence 999998888765 6999999999744 2346789999998766554444 33 2345589999993
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH-----hCCceEEeecCee
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA-----WGIRATDLNQGVV 297 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~gl~~~ivRp~~v 297 (479)
+|-. |......|++||+..-.+.|+++.. .|+++..+.||.+
T Consensus 139 --~GL~----------------------P~p~~pVY~AsKaGVvgFTRSla~~ayy~~sGV~~~avCPG~t 185 (261)
T KOG4169|consen 139 --AGLD----------------------PMPVFPVYAASKAGVVGFTRSLADLAYYQRSGVRFNAVCPGFT 185 (261)
T ss_pred --cccC----------------------ccccchhhhhcccceeeeehhhhhhhhHhhcCEEEEEECCCcc
Confidence 4422 3344678999999998888876543 4888888888664
|
|
| >KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-14 Score=136.84 Aligned_cols=187 Identities=16% Similarity=0.201 Sum_probs=136.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhc-ccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK-SLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~Dl 161 (479)
...+++++|||||++||.+++++|+++|.+|+...|..... .+..+.+. +.....+.++++|+
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~----------------~~~~~~i~~~~~~~~i~~~~lDL 95 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERG----------------EEAKEQIQKGKANQKIRVIQLDL 95 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHH----------------HHHHHHHHhcCCCCceEEEECCC
Confidence 45679999999999999999999999999999998865321 12222222 23456788999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMG 232 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~ 232 (479)
++.+++.+..+.+ ..|++|||||+...+. ....+.++..+.+|..|++.|.++. +..... |||++||..
T Consensus 96 ssl~SV~~fa~~~~~~~~~ldvLInNAGV~~~~~-~~t~DG~E~~~~tN~lg~flLt~lLlp~lk~s~~~-RIV~vsS~~ 173 (314)
T KOG1208|consen 96 SSLKSVRKFAEEFKKKEGPLDVLINNAGVMAPPF-SLTKDGLELTFATNYLGHFLLTELLLPLLKRSAPS-RIVNVSSIL 173 (314)
T ss_pred CCHHHHHHHHHHHHhcCCCccEEEeCcccccCCc-ccCccchhheehhhhHHHHHHHHHHHHHHhhCCCC-CEEEEcCcc
Confidence 9999888876654 6899999999987665 2333456788999999988887666 333334 999999954
Q ss_pred cccCC-C-CCCcCCceeecCCCCCCCCCCC-CCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCC
Q 011707 233 EYGTP-N-IDIEEGYITINHNGRTDTLPYP-KQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVR 301 (479)
Q Consensus 233 v~g~~-~-~~~~e~~~~~~~~~~~~~~~~~-~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~ 301 (479)
. +.. + ..+..+. .. ......|+.||.+...++..++++. |+.+..+.||.|..+.
T Consensus 174 ~-~~~~~~~~l~~~~-------------~~~~~~~~~Y~~SKla~~l~~~eL~k~l~~~V~~~~~hPG~v~t~~ 233 (314)
T KOG1208|consen 174 G-GGKIDLKDLSGEK-------------AKLYSSDAAYALSKLANVLLANELAKRLKKGVTTYSVHPGVVKTTG 233 (314)
T ss_pred c-cCccchhhccchh-------------ccCccchhHHHHhHHHHHHHHHHHHHHhhcCceEEEECCCcccccc
Confidence 3 111 1 0111100 00 1223369999999999999999876 6999999999998774
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-14 Score=137.11 Aligned_cols=221 Identities=18% Similarity=0.121 Sum_probs=152.4
Q ss_pred cCC--chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHHHHH
Q 011707 93 GGD--GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSES 170 (479)
Q Consensus 93 Gat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~~~~ 170 (479)
|++ ++||.+++++|+++|++|++.++..... .+.++.+....+ ..++.+|++++++++++
T Consensus 1 g~~~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~----------------~~~~~~l~~~~~--~~~~~~D~~~~~~v~~~ 62 (241)
T PF13561_consen 1 GAGSSSGIGRAIARALAEEGANVILTDRNEEKL----------------ADALEELAKEYG--AEVIQCDLSDEESVEAL 62 (241)
T ss_dssp STSSTSHHHHHHHHHHHHTTEEEEEEESSHHHH----------------HHHHHHHHHHTT--SEEEESCTTSHHHHHHH
T ss_pred CCCCCCChHHHHHHHHHHCCCEEEEEeCChHHH----------------HHHHHHHHHHcC--CceEeecCcchHHHHHH
Confidence 667 9999999999999999999999876521 122333332222 33699999999988887
Q ss_pred hhh------cCCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccccCCC
Q 011707 171 FKS------FEPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEYGTPN 238 (479)
Q Consensus 171 ~~~------~~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~g~~~ 238 (479)
++. .++|++|||++.... +....+.+++...+++|+.++..+++++.+. .....+|++||.....
T Consensus 63 ~~~~~~~~~g~iD~lV~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gsii~iss~~~~~--- 139 (241)
T PF13561_consen 63 FDEAVERFGGRIDILVNNAGISPPSNVEKPLLDLSEEDWDKTFDINVFSPFLLAQAALPLMKKGGSIINISSIAAQR--- 139 (241)
T ss_dssp HHHHHHHHCSSESEEEEEEESCTGGGTSSSGGGSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHEEEEEEEEEGGGTS---
T ss_pred HHHHHhhcCCCeEEEEecccccccccCCCChHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcccccchhhcc---
Confidence 654 268999999997654 2223355678889999999999999888542 1113899999864321
Q ss_pred CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH----hCCceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 239 IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA----WGIRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 239 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
+......|+.+|++.+.+++.++.+ +||++++|.||.|..+....
T Consensus 140 ---------------------~~~~~~~y~~sKaal~~l~r~lA~el~~~~gIrVN~V~pG~i~t~~~~~---------- 188 (241)
T PF13561_consen 140 ---------------------PMPGYSAYSASKAALEGLTRSLAKELAPKKGIRVNAVSPGPIETPMTER---------- 188 (241)
T ss_dssp ---------------------BSTTTHHHHHHHHHHHHHHHHHHHHHGGHGTEEEEEEEESSBSSHHHHH----------
T ss_pred ---------------------cCccchhhHHHHHHHHHHHHHHHHHhccccCeeeeeecccceeccchhc----------
Confidence 2233569999999999999999886 47999999999887552100
Q ss_pred cCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
......+........| ...+...+|+|.+++.++......-.++++.+.++
T Consensus 189 -------~~~~~~~~~~~~~~~p---------l~r~~~~~evA~~v~fL~s~~a~~itG~~i~vDGG 239 (241)
T PF13561_consen 189 -------IPGNEEFLEELKKRIP---------LGRLGTPEEVANAVLFLASDAASYITGQVIPVDGG 239 (241)
T ss_dssp -------HHTHHHHHHHHHHHST---------TSSHBEHHHHHHHHHHHHSGGGTTGTSEEEEESTT
T ss_pred -------cccccchhhhhhhhhc---------cCCCcCHHHHHHHHHHHhCccccCccCCeEEECCC
Confidence 0001223333333222 23456899999999999986543222247777654
|
... |
| >PRK06300 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=6e-14 Score=135.62 Aligned_cols=248 Identities=13% Similarity=0.086 Sum_probs=140.7
Q ss_pred CCCCcEEEEEcCC--chhhHHHHHHHHhCCCeEEEEeccccc-ccccccCCCCCCc-----cch-hh-hhhhhhcccCCC
Q 011707 83 PSKAKRVMIIGGD--GYCGWATALHLSNKGYEVAIVDSLIRR-LFDHQLGLDSLTP-----IAS-IH-DRLRCWKSLTGK 152 (479)
Q Consensus 83 ~~~~~~vLVtGat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~-~~~~~~~~~~~~~-----~~~-~~-~~~~~~~~~~~~ 152 (479)
.+++|++|||||+ .+||+++++.|+++|++|++.++...- ............. ... .. .+..... ..-.
T Consensus 5 ~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vvv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~d~~ 83 (299)
T PRK06300 5 DLTGKIAFIAGIGDDQGYGWGIAKALAEAGATILVGTWVPIYKIFSQSLELGKFDASRKLSNGSLLTFAKIYPMD-ASFD 83 (299)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEEEEeccchhhhhhhhcccccccccccccccchhhhhhHHHhh-hhcC
Confidence 3578999999995 999999999999999999987653100 0000000000000 000 00 0000000 0000
Q ss_pred ceeEEEcccCC--------hHHHHHHhh----hc-CCCEEEEcccccC---cccccccccccchhhhhhHHHHHHHHHHH
Q 011707 153 NIELYIGDICD--------FEFLSESFK----SF-EPDAVVHFGEQRS---APYSMIDRSRAVFTQHNNVIGTLNVLFAM 216 (479)
Q Consensus 153 ~v~~v~~Dl~d--------~~~~~~~~~----~~-~~D~Vih~A~~~~---~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a 216 (479)
...-+..|+++ .++++++++ .+ ++|++|||||... .+....+.+++.+++++|+.|+.++++++
T Consensus 84 ~~~~v~~~i~~~~~~~~~~~~si~~~~~~v~~~~G~lDvLVnNAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~l~~a~ 163 (299)
T PRK06300 84 TPEDVPEEIRENKRYKDLSGYTISEVAEQVKKDFGHIDILVHSLANSPEISKPLLETSRKGYLAALSTSSYSFVSLLSHF 163 (299)
T ss_pred CCEEeecccCccccccCCCHHHHHHHHHHHHHHcCCCcEEEECCCcCcccCCChhhCCHHHHHHHHHHHhHHHHHHHHHH
Confidence 11222232222 123444443 22 5999999998632 23334466788999999999999999888
Q ss_pred HHc-CCcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCC-chhhhhhHHHHHHHHHHHHHh----CCceE
Q 011707 217 KEF-RQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS-SFYHLSKVHDSHNIAFTCKAW----GIRAT 290 (479)
Q Consensus 217 ~~~-g~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~~----gl~~~ 290 (479)
... ..+.++|++||..-. . +.... ..|+.+|++.+.+++.++.++ |++++
T Consensus 164 ~p~m~~~G~ii~iss~~~~--~----------------------~~p~~~~~Y~asKaAl~~lt~~la~el~~~~gIrVn 219 (299)
T PRK06300 164 GPIMNPGGSTISLTYLASM--R----------------------AVPGYGGGMSSAKAALESDTKVLAWEAGRRWGIRVN 219 (299)
T ss_pred HHHhhcCCeEEEEeehhhc--C----------------------cCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence 653 111378988874321 1 11112 379999999999999999873 79999
Q ss_pred EeecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCC
Q 011707 291 DLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP 370 (479)
Q Consensus 291 ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~ 370 (479)
.|.||.+--+.... + . .............+ ...+...+|++.+++.++......
T Consensus 220 ~V~PG~v~T~~~~~------~----------~-~~~~~~~~~~~~~p---------~~r~~~peevA~~v~~L~s~~~~~ 273 (299)
T PRK06300 220 TISAGPLASRAGKA------I----------G-FIERMVDYYQDWAP---------LPEPMEAEQVGAAAAFLVSPLASA 273 (299)
T ss_pred EEEeCCccChhhhc------c----------c-ccHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCccccC
Confidence 99999876542110 0 0 00011111111111 123467899999999988754332
Q ss_pred CCceEEEeCCC
Q 011707 371 GEFRVFNQFTE 381 (479)
Q Consensus 371 g~~~~~ni~~~ 381 (479)
-..+++.+.++
T Consensus 274 itG~~i~vdGG 284 (299)
T PRK06300 274 ITGETLYVDHG 284 (299)
T ss_pred CCCCEEEECCC
Confidence 12237777654
|
|
| >KOG1610 consensus Corticosteroid 11-beta-dehydrogenase and related short chain-type dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-14 Score=132.03 Aligned_cols=171 Identities=18% Similarity=0.156 Sum_probs=130.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccC-CCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT-GKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl 161 (479)
+..+|.|||||+-.+.|..++++|.++|+.|.+--..+.+. +.+.... .++...+..|+
T Consensus 26 ~~~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~Agcl~~~ga--------------------e~L~~~~~s~rl~t~~LDV 85 (322)
T KOG1610|consen 26 SLSDKAVLITGCDSGFGRLLAKKLDKKGFRVFAGCLTEEGA--------------------ESLRGETKSPRLRTLQLDV 85 (322)
T ss_pred ccCCcEEEEecCCcHHHHHHHHHHHhcCCEEEEEeecCchH--------------------HHHhhhhcCCcceeEeecc
Confidence 34578999999999999999999999999998754333221 2222222 57888999999
Q ss_pred CChHHHHHHhhhc-------CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEe
Q 011707 162 CDFEFLSESFKSF-------EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKL 228 (479)
Q Consensus 162 ~d~~~~~~~~~~~-------~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~ 228 (479)
|++++++++.+.. +.=.||||||+... +..+...+++..++++|+.|+..+..+. ++.. .|+|++
T Consensus 86 T~~esi~~a~~~V~~~l~~~gLwglVNNAGi~~~~g~~ewl~~~d~~~~l~vNllG~irvT~~~lpLlr~ar--GRvVnv 163 (322)
T KOG1610|consen 86 TKPESVKEAAQWVKKHLGEDGLWGLVNNAGISGFLGPDEWLTVEDYRKVLNVNLLGTIRVTKAFLPLLRRAR--GRVVNV 163 (322)
T ss_pred CCHHHHHHHHHHHHHhcccccceeEEeccccccccCccccccHHHHHHHHhhhhhhHHHHHHHHHHHHHhcc--CeEEEe
Confidence 9999998887633 46689999997543 3445577789999999999988887665 3333 499999
Q ss_pred eccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecC
Q 011707 229 GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGV 300 (479)
Q Consensus 229 SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp 300 (479)
||.+ |.. +.....+|+.||++.|.+...+.+| +|+.+.++-|| +|-.
T Consensus 164 sS~~--GR~----------------------~~p~~g~Y~~SK~aVeaf~D~lR~EL~~fGV~VsiiePG-~f~T 213 (322)
T KOG1610|consen 164 SSVL--GRV----------------------ALPALGPYCVSKFAVEAFSDSLRRELRPFGVKVSIIEPG-FFKT 213 (322)
T ss_pred cccc--cCc----------------------cCcccccchhhHHHHHHHHHHHHHHHHhcCcEEEEeccC-cccc
Confidence 9953 221 2234789999999999998887776 69999999999 4443
|
|
| >COG1028 FabG Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.3e-14 Score=132.86 Aligned_cols=175 Identities=15% Similarity=0.131 Sum_probs=127.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCC-CceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTG-KNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~Dl~ 162 (479)
+.+|+||||||+++||..+++.|+++|+.|+++.+..... ..+.......... ..+.+..+|++
T Consensus 3 ~~~~~ilITGas~GiG~aia~~l~~~G~~v~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~Dvs 67 (251)
T COG1028 3 LSGKVALVTGASSGIGRAIARALAREGARVVVAARRSEEE---------------AAEALAAAIKEAGGGRAAAVAADVS 67 (251)
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEcCCCchh---------------hHHHHHHHHHhcCCCcEEEEEecCC
Confidence 4689999999999999999999999999988877654321 0001111111111 35777889999
Q ss_pred C-hHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccc
Q 011707 163 D-FEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEY 234 (479)
Q Consensus 163 d-~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~ 234 (479)
+ .++++.+++.. ++|++|||||.... .......+++.+.+++|+.|...+.+++...-.+.+||++||....
T Consensus 68 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~Iv~isS~~~~ 147 (251)
T COG1028 68 DDEESVEALVAAAEEEFGRIDILVNNAGIAGPDAPLEELTEEDWDRVIDVNLLGAFLLTRAALPLMKKQRIVNISSVAGL 147 (251)
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHhhhhCeEEEECCchhc
Confidence 8 88777666543 49999999998653 3344455788999999999999998855543322289999996533
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCC-CchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeee
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQA-SSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVY 298 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~ 298 (479)
.. .+ ...|+.||++.+.+.+.++.+ +|++++.+-||.+-
T Consensus 148 -~~------------------------~~~~~~Y~~sK~al~~~~~~l~~e~~~~gi~v~~v~PG~~~ 190 (251)
T COG1028 148 -GG------------------------PPGQAAYAASKAALIGLTKALALELAPRGIRVNAVAPGYID 190 (251)
T ss_pred -CC------------------------CCCcchHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEeccCC
Confidence 21 11 478999999999999998866 58999999999554
|
|
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.1e-13 Score=120.26 Aligned_cols=173 Identities=13% Similarity=0.131 Sum_probs=124.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..+|.+||||||+.+||..|+++|++.|.+|++..|+... +.+.... .+.+..+.+|+.
T Consensus 2 k~tgnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~----------------L~e~~~~-----~p~~~t~v~Dv~ 60 (245)
T COG3967 2 KTTGNTILITGGASGIGLALAKRFLELGNTVIICGRNEER----------------LAEAKAE-----NPEIHTEVCDVA 60 (245)
T ss_pred cccCcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHH----------------HHHHHhc-----Ccchheeeeccc
Confidence 3568899999999999999999999999999999886542 1122222 257788899999
Q ss_pred ChHHHHHHhhh----c-CCCEEEEcccccCccc---ccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeecc
Q 011707 163 DFEFLSESFKS----F-EPDAVVHFGEQRSAPY---SMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~----~-~~D~Vih~A~~~~~~~---~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~ 231 (479)
|.++.+++++. + ..+++|||||+...-. ......+....+++|+.++.++..+...+ ....-||.+||.
T Consensus 61 d~~~~~~lvewLkk~~P~lNvliNNAGIqr~~dlt~~e~~~~~~~~eI~~Nl~API~Lt~~~lphl~~q~~a~IInVSSG 140 (245)
T COG3967 61 DRDSRRELVEWLKKEYPNLNVLINNAGIQRNEDLTGAEDLLDDAEQEIATNLLAPIRLTALLLPHLLRQPEATIINVSSG 140 (245)
T ss_pred chhhHHHHHHHHHhhCCchheeeecccccchhhccCCcchhhHHHHHHHHhhhhHHHHHHHHHHHHHhCCCceEEEeccc
Confidence 98876665543 3 5899999999864321 11222233556789999999998777543 234489999995
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecC
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGV 300 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp 300 (479)
-.+ .|......|+++|++..-+...+..+ .++.+.=+-|+.|--+
T Consensus 141 Laf------------------------vPm~~~PvYcaTKAaiHsyt~aLR~Qlk~t~veVIE~~PP~V~t~ 188 (245)
T COG3967 141 LAF------------------------VPMASTPVYCATKAAIHSYTLALREQLKDTSVEVIELAPPLVDTT 188 (245)
T ss_pred ccc------------------------CcccccccchhhHHHHHHHHHHHHHHhhhcceEEEEecCCceecC
Confidence 433 13344567999999998877665543 4788888888887654
|
|
| >KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.8e-14 Score=125.60 Aligned_cols=167 Identities=20% Similarity=0.222 Sum_probs=121.9
Q ss_pred CCcEEEEEcC-CchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGG-DGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGa-tG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+.|.|||||+ .|+||.+|+++|.+.|+.|++..|.-.+..+ + .. ..++...+.|+++
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~-------------L-------~~--~~gl~~~kLDV~~ 63 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQ-------------L-------AI--QFGLKPYKLDVSK 63 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhh-------------H-------HH--hhCCeeEEeccCC
Confidence 3578999875 6999999999999999999998775432111 1 10 2468889999999
Q ss_pred hHHHHHHhhhc------CCCEEEEcccccC-cccccccccccchhhhhhHHHHHHHHHHHHHc--CCcceEEEeeccccc
Q 011707 164 FEFLSESFKSF------EPDAVVHFGEQRS-APYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF--RQECHLVKLGTMGEY 234 (479)
Q Consensus 164 ~~~~~~~~~~~------~~D~Vih~A~~~~-~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--g~~~~~V~~SS~~v~ 234 (479)
++.+.....+. .+|+++||||..- .+..+.+.++.+.++++|+.|..++.++.... ..+..||++.|..+|
T Consensus 64 ~~~V~~v~~evr~~~~Gkld~L~NNAG~~C~~Pa~d~~i~ave~~f~vNvfG~irM~~a~~h~likaKGtIVnvgSl~~~ 143 (289)
T KOG1209|consen 64 PEEVVTVSGEVRANPDGKLDLLYNNAGQSCTFPALDATIAAVEQCFKVNVFGHIRMCRALSHFLIKAKGTIVNVGSLAGV 143 (289)
T ss_pred hHHHHHHHHHHhhCCCCceEEEEcCCCCCcccccccCCHHHHHhhhccceeeeehHHHHHHHHHHHccceEEEecceeEE
Confidence 99887765433 5899999999753 34445566677889999999999998877532 223489999997666
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCee
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVV 297 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v 297 (479)
- |....+.|.+||++...+.+.+.-+ +|++++.+-+|.|
T Consensus 144 v------------------------pfpf~~iYsAsKAAihay~~tLrlEl~PFgv~Vin~itGGv 185 (289)
T KOG1209|consen 144 V------------------------PFPFGSIYSASKAAIHAYARTLRLELKPFGVRVINAITGGV 185 (289)
T ss_pred e------------------------ccchhhhhhHHHHHHHHhhhhcEEeeeccccEEEEecccce
Confidence 2 3344689999999988876655433 4677766666654
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.1e-13 Score=113.38 Aligned_cols=204 Identities=14% Similarity=0.107 Sum_probs=144.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|-|+||||-+|++|+++++.+||+|+++.|+..... ...++..++.|+.|+++
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~-------------------------~~~~~~i~q~Difd~~~ 55 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKRGHEVTAIVRNASKLA-------------------------ARQGVTILQKDIFDLTS 55 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhCCCeeEEEEeChHhcc-------------------------ccccceeecccccChhh
Confidence 68999999999999999999999999999998754110 01578899999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecc-ccccCCCCCCcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTM-GEYGTPNIDIEEGY 245 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~-~v~g~~~~~~~e~~ 245 (479)
+.+.+. +.|+||..-+... ...+ .........+++..+..++. |++.++.+ +.|-.+...
T Consensus 56 ~a~~l~--g~DaVIsA~~~~~---~~~~--------~~~~k~~~~li~~l~~agv~-RllVVGGAGSL~id~g~r----- 116 (211)
T COG2910 56 LASDLA--GHDAVISAFGAGA---SDND--------ELHSKSIEALIEALKGAGVP-RLLVVGGAGSLEIDEGTR----- 116 (211)
T ss_pred hHhhhc--CCceEEEeccCCC---CChh--------HHHHHHHHHHHHHHhhcCCe-eEEEEcCccceEEcCCce-----
Confidence 999998 8999998755321 1111 12334466788888888887 88888864 333332211
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
-...|.-|...|...+..+|.+ ..+..+.+++|+.+-|..+|-|+++ +|-
T Consensus 117 ----------LvD~p~fP~ey~~~A~~~ae~L-~~Lr~~~~l~WTfvSPaa~f~PGer--------------Tg~----- 166 (211)
T COG2910 117 ----------LVDTPDFPAEYKPEALAQAEFL-DSLRAEKSLDWTFVSPAAFFEPGER--------------TGN----- 166 (211)
T ss_pred ----------eecCCCCchhHHHHHHHHHHHH-HHHhhccCcceEEeCcHHhcCCccc--------------cCc-----
Confidence 1113445566778888888754 3344455799999999999999764 222
Q ss_pred HHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCC
Q 011707 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGE 372 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~ 372 (479)
...|+...+.+.. --++|...|.|-+++.-++++....+
T Consensus 167 ------yrlggD~ll~n~~--G~SrIS~aDYAiA~lDe~E~~~h~rq 205 (211)
T COG2910 167 ------YRLGGDQLLVNAK--GESRISYADYAIAVLDELEKPQHIRQ 205 (211)
T ss_pred ------eEeccceEEEcCC--CceeeeHHHHHHHHHHHHhcccccce
Confidence 2234443343321 23779999999999999999887665
|
|
| >TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.9e-13 Score=161.62 Aligned_cols=191 Identities=15% Similarity=0.122 Sum_probs=138.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEeccccccccc----ccCC---------------CC---------CCc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDH----QLGL---------------DS---------LTP 135 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~----~~~~---------------~~---------~~~ 135 (479)
+++++|||||+|+||..++++|+++ |++|++++|........ .... .+ ..+
T Consensus 1996 ~g~vvLVTGGarGIG~aiA~~LA~~~ga~viL~gRs~~~~~~p~~a~~~~~~~lk~~~~~~l~~~g~~~~P~~i~~~~~~ 2075 (2582)
T TIGR02813 1996 SDDVFLVTGGAKGVTFECALELAKQCQAHFILAGRSSFDDNEPSWAQGKDENELKKAAIQHLQASGEKPTPKKVDALVRP 2075 (2582)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHhcCCEEEEEeCCcccccCchhhhccchHHHHHhhhhhhhhcccccccchhhhcccc
Confidence 5889999999999999999999998 69999998862110000 0000 00 000
Q ss_pred ---cchhhhhhhhhcccCCCceeEEEcccCChHHHHHHhhhc----CCCEEEEcccccCcc-cccccccccchhhhhhHH
Q 011707 136 ---IASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSF----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVI 207 (479)
Q Consensus 136 ---~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~~~~~~~~----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~ 207 (479)
..++.+.++.+.. .+.++.++.+|++|.+++.++++.. ++|+||||||..... ....+.+++.+++++|+.
T Consensus 2076 ~~~~~ei~~~la~l~~-~G~~v~y~~~DVtD~~av~~av~~v~~~g~IDgVVhnAGv~~~~~i~~~t~e~f~~v~~~nv~ 2154 (2582)
T TIGR02813 2076 VLSSLEIAQALAAFKA-AGASAEYASADVTNSVSVAATVQPLNKTLQITGIIHGAGVLADKHIQDKTLEEFNAVYGTKVD 2154 (2582)
T ss_pred cchhHHHHHHHHHHHh-cCCcEEEEEccCCCHHHHHHHHHHHHHhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHHH
Confidence 0111111222222 2457889999999999888887653 599999999975432 234466788999999999
Q ss_pred HHHHHHHHHHHcCCcceEEEeecc-ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-
Q 011707 208 GTLNVLFAMKEFRQECHLVKLGTM-GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW- 285 (479)
Q Consensus 208 g~~~ll~~a~~~g~~~~~V~~SS~-~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~- 285 (479)
|+.++++++.....+ +||++||. +.+|... ...|+.+|.....+.+.++.++
T Consensus 2155 G~~~Ll~al~~~~~~-~IV~~SSvag~~G~~g-------------------------qs~YaaAkaaL~~la~~la~~~~ 2208 (2582)
T TIGR02813 2155 GLLSLLAALNAENIK-LLALFSSAAGFYGNTG-------------------------QSDYAMSNDILNKAALQLKALNP 2208 (2582)
T ss_pred HHHHHHHHHHHhCCC-eEEEEechhhcCCCCC-------------------------cHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999876655 89999994 4555432 6789999999999998888776
Q ss_pred CCceEEeecCeeecCCC
Q 011707 286 GIRATDLNQGVVYGVRT 302 (479)
Q Consensus 286 gl~~~ivRp~~v~Gp~~ 302 (479)
+++++.+.||.+-|+..
T Consensus 2209 ~irV~sI~wG~wdtgm~ 2225 (2582)
T TIGR02813 2209 SAKVMSFNWGPWDGGMV 2225 (2582)
T ss_pred CcEEEEEECCeecCCcc
Confidence 68999999998876543
|
Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD. |
| >PRK12428 3-alpha-hydroxysteroid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.2e-13 Score=130.18 Aligned_cols=162 Identities=16% Similarity=0.108 Sum_probs=114.0
Q ss_pred HHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHHHHHhhhc--CCCEE
Q 011707 102 TALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSF--EPDAV 179 (479)
Q Consensus 102 l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~~~~~~~~--~~D~V 179 (479)
++++|+++|++|++++|..... ....++.+|++|.++++++++.. ++|+|
T Consensus 1 ~a~~l~~~G~~Vv~~~r~~~~~----------------------------~~~~~~~~Dl~~~~~v~~~~~~~~~~iD~l 52 (241)
T PRK12428 1 TARLLRFLGARVIGVDRREPGM----------------------------TLDGFIQADLGDPASIDAAVAALPGRIDAL 52 (241)
T ss_pred ChHHHHhCCCEEEEEeCCcchh----------------------------hhhHhhcccCCCHHHHHHHHHHhcCCCeEE
Confidence 4789999999999998753310 01346789999999999988753 69999
Q ss_pred EEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc--CCcceEEEeeccccccCCCC-CCcCCceeecCCCCCCC
Q 011707 180 VHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF--RQECHLVKLGTMGEYGTPNI-DIEEGYITINHNGRTDT 256 (479)
Q Consensus 180 ih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--g~~~~~V~~SS~~v~g~~~~-~~~e~~~~~~~~~~~~~ 256 (479)
|||||.... .++..++++|+.++..+++++... ..+ +||++||...|+.+.. +..|......+ .++.
T Consensus 53 i~nAG~~~~-------~~~~~~~~vN~~~~~~l~~~~~~~~~~~g-~Iv~isS~~~~~~~~~~~~~~~~~~~~~--~~~~ 122 (241)
T PRK12428 53 FNIAGVPGT-------APVELVARVNFLGLRHLTEALLPRMAPGG-AIVNVASLAGAEWPQRLELHKALAATAS--FDEG 122 (241)
T ss_pred EECCCCCCC-------CCHHHhhhhchHHHHHHHHHHHHhccCCc-EEEEeCcHHhhccccchHHHHhhhccch--HHHH
Confidence 999996421 235678999999999999998764 223 9999999877764321 11111000000 0000
Q ss_pred C----CCCCCCCchhhhhhHHHHHHHHHHH-HH---hCCceEEeecCeeecCC
Q 011707 257 L----PYPKQASSFYHLSKVHDSHNIAFTC-KA---WGIRATDLNQGVVYGVR 301 (479)
Q Consensus 257 ~----~~~~~~~~~Y~~sK~~~E~~~~~~~-~~---~gl~~~ivRp~~v~Gp~ 301 (479)
+ ..+......|+.||++.+.+++.++ .+ .|+++++++||.|.++.
T Consensus 123 ~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~e~~~~girvn~v~PG~v~T~~ 175 (241)
T PRK12428 123 AAWLAAHPVALATGYQLSKEALILWTMRQAQPWFGARGIRVNCVAPGPVFTPI 175 (241)
T ss_pred HHhhhccCCCcccHHHHHHHHHHHHHHHHHHHhhhccCeEEEEeecCCccCcc
Confidence 0 0133456899999999999999888 44 48999999999998874
|
|
| >KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=127.36 Aligned_cols=224 Identities=15% Similarity=0.125 Sum_probs=134.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..+.++|||+||||.+|+.+++.|+++|+.|+++.|......+... ......+...+..|..
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~------------------~~~~d~~~~~v~~~~~ 137 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG------------------VFFVDLGLQNVEADVV 137 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc------------------ccccccccceeeeccc
Confidence 4467899999999999999999999999999999886543222100 0112245666666655
Q ss_pred Ch-HHHHHHhhhc--CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC
Q 011707 163 DF-EFLSESFKSF--EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI 239 (479)
Q Consensus 163 d~-~~~~~~~~~~--~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~ 239 (479)
.+ +.+..+.+.+ ...+++-++|.......... -..+...|++|++++|+..|++ |||++|+.+.-.....
T Consensus 138 ~~~d~~~~~~~~~~~~~~~v~~~~ggrp~~ed~~~------p~~VD~~g~knlvdA~~~aGvk-~~vlv~si~~~~~~~~ 210 (411)
T KOG1203|consen 138 TAIDILKKLVEAVPKGVVIVIKGAGGRPEEEDIVT------PEKVDYEGTKNLVDACKKAGVK-RVVLVGSIGGTKFNQP 210 (411)
T ss_pred cccchhhhhhhhccccceeEEecccCCCCcccCCC------cceecHHHHHHHHHHHHHhCCc-eEEEEEeecCcccCCC
Confidence 44 4444555433 24566666654332210111 2468999999999999999999 9999998653221110
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCC
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDG 319 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g 319 (479)
+........+..+|..+|+++ ++.|++++|+||+...-....
T Consensus 211 ------------------~~~~~~~~~~~~~k~~~e~~~----~~Sgl~ytiIR~g~~~~~~~~---------------- 252 (411)
T KOG1203|consen 211 ------------------PNILLLNGLVLKAKLKAEKFL----QDSGLPYTIIRPGGLEQDTGG---------------- 252 (411)
T ss_pred ------------------chhhhhhhhhhHHHHhHHHHH----HhcCCCcEEEeccccccCCCC----------------
Confidence 000000234456777777754 567999999999876433210
Q ss_pred cccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 320 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
.. .......+-....++. -..+.-.|+|+.++.++.++...++ .+.+++.
T Consensus 253 -~~-------~~~~~~~~~~~~~~~~--~~~i~r~~vael~~~all~~~~~~~-k~~~~v~ 302 (411)
T KOG1203|consen 253 -QR-------EVVVDDEKELLTVDGG--AYSISRLDVAELVAKALLNEAATFK-KVVELVL 302 (411)
T ss_pred -cc-------eecccCcccccccccc--ceeeehhhHHHHHHHHHhhhhhccc-eeEEeec
Confidence 00 0000111111111111 1357778999999999988777654 3555544
|
|
| >KOG1210 consensus Predicted 3-ketosphinganine reductase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.6e-13 Score=122.35 Aligned_cols=174 Identities=16% Similarity=0.133 Sum_probs=133.1
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCC-CceeEEEcccCChH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTG-KNIELYIGDICDFE 165 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~~Dl~d~~ 165 (479)
+.|+||||+.+||..++.++..+|++|+++.|..+- +.+..+.++.... ..+.+..+|+.|.+
T Consensus 34 ~hi~itggS~glgl~la~e~~~~ga~Vti~ar~~~k----------------l~~a~~~l~l~~~~~~v~~~S~d~~~Y~ 97 (331)
T KOG1210|consen 34 RHILITGGSSGLGLALALECKREGADVTITARSGKK----------------LLEAKAELELLTQVEDVSYKSVDVIDYD 97 (331)
T ss_pred ceEEEecCcchhhHHHHHHHHHccCceEEEeccHHH----------------HHHHHhhhhhhhccceeeEeccccccHH
Confidence 689999999999999999999999999999886542 2333333433322 23778889999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHHc----C-CcceEEEeecc-cc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKEF----R-QECHLVKLGTM-GE 233 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g-~~~~~V~~SS~-~v 233 (479)
+++.++++. .+|.+|||||..-.... ...++++...+++|..|+.|++.++... . .+ +|+.+||. +-
T Consensus 98 ~v~~~~~~l~~~~~~~d~l~~cAG~~v~g~f~~~s~~~v~~~m~vNylgt~~v~~~~~~~mk~~~~~g-~I~~vsS~~a~ 176 (331)
T KOG1210|consen 98 SVSKVIEELRDLEGPIDNLFCCAGVAVPGLFEDLSPEVVEKLMDVNYLGTVNVAKAAARAMKKREHLG-RIILVSSQLAM 176 (331)
T ss_pred HHHHHHhhhhhccCCcceEEEecCcccccccccCCHHHHHHHHHhhhhhhHHHHHHHHHHhhccccCc-EEEEehhhhhh
Confidence 999988865 58999999997654443 3467788889999999999999877432 2 33 78888883 33
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCC
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRT 302 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~ 302 (479)
+ +....+.|+.+|.+.-.+.....+| +|+.++..-|+.+--|+.
T Consensus 177 ~-------------------------~i~GysaYs~sK~alrgLa~~l~qE~i~~~v~Vt~~~P~~~~tpGf 223 (331)
T KOG1210|consen 177 L-------------------------GIYGYSAYSPSKFALRGLAEALRQELIKYGVHVTLYYPPDTLTPGF 223 (331)
T ss_pred c-------------------------CcccccccccHHHHHHHHHHHHHHHHhhcceEEEEEcCCCCCCCcc
Confidence 3 2334788999999888887777665 488999998988888764
|
|
| >PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.9e-13 Score=118.34 Aligned_cols=168 Identities=18% Similarity=0.182 Sum_probs=117.8
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
++|||||+|.||..+++.|+++|. +|+++.|...... +..+..+.+... +.++.++.+|++|+++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~-------------~~~~~i~~l~~~-g~~v~~~~~Dv~d~~~ 67 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSA-------------EAEAAIRELESA-GARVEYVQCDVTDPEA 67 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGST-------------THHHHHHHHHHT-T-EEEEEE--TTSHHH
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccH-------------HHHHHHHHHHhC-CCceeeeccCccCHHH
Confidence 689999999999999999999975 7888887632110 111222333322 4689999999999999
Q ss_pred HHHHhhhc-----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec-cccccCCCC
Q 011707 167 LSESFKSF-----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT-MGEYGTPNI 239 (479)
Q Consensus 167 ~~~~~~~~-----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS-~~v~g~~~~ 239 (479)
+.++++.. .++.|||+||..... ....+++++..++...+.|+.+|.++......+ .||.+|| ++++|.+.
T Consensus 68 v~~~~~~~~~~~~~i~gVih~ag~~~~~~~~~~t~~~~~~~~~~Kv~g~~~L~~~~~~~~l~-~~i~~SSis~~~G~~g- 145 (181)
T PF08659_consen 68 VAAALAQLRQRFGPIDGVIHAAGVLADAPIQDQTPDEFDAVLAPKVRGLWNLHEALENRPLD-FFILFSSISSLLGGPG- 145 (181)
T ss_dssp HHHHHHTSHTTSS-EEEEEE-------B-GCC--HHHHHHHHHHHHHHHHHHHHHHTTTTTS-EEEEEEEHHHHTT-TT-
T ss_pred HHHHHHHHHhccCCcceeeeeeeeecccccccCCHHHHHHHHhhhhhHHHHHHHHhhcCCCC-eEEEECChhHhccCcc-
Confidence 99998754 578999999986432 334466677888999999999999999887777 8888888 56677654
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCe
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGV 296 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~ 296 (479)
+..|+..-...+.+++... ..|.++..+.-+.
T Consensus 146 ------------------------q~~YaaAN~~lda~a~~~~-~~g~~~~sI~wg~ 177 (181)
T PF08659_consen 146 ------------------------QSAYAAANAFLDALARQRR-SRGLPAVSINWGA 177 (181)
T ss_dssp ------------------------BHHHHHHHHHHHHHHHHHH-HTTSEEEEEEE-E
T ss_pred ------------------------hHhHHHHHHHHHHHHHHHH-hCCCCEEEEEccc
Confidence 7899999999999887654 4589988887544
|
It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B .... |
| >KOG1611 consensus Predicted short chain-type dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=7e-12 Score=111.11 Aligned_cols=214 Identities=14% Similarity=0.104 Sum_probs=140.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+.|+||||+++||..|+++|+.. |-++++..++..+.. .+.++.+ ...+.+++.++.|+++.
T Consensus 3 pksv~ItGaNRGIGlgLVk~llk~~~i~~iiat~r~~e~a---------------~~~l~~k-~~~d~rvHii~Ldvt~d 66 (249)
T KOG1611|consen 3 PKSVFITGANRGIGLGLVKELLKDKGIEVIIATARDPEKA---------------ATELALK-SKSDSRVHIIQLDVTCD 66 (249)
T ss_pred CccEEEeccCcchhHHHHHHHhcCCCcEEEEEecCChHHh---------------hHHHHHh-hccCCceEEEEEecccH
Confidence 457999999999999999999987 667766555422110 0111111 12357999999999998
Q ss_pred HHHHHHhhhc-------CCCEEEEcccccCccccc--ccccccchhhhhhHHHHHHHHHHH----HHcC---------C-
Q 011707 165 EFLSESFKSF-------EPDAVVHFGEQRSAPYSM--IDRSRAVFTQHNNVIGTLNVLFAM----KEFR---------Q- 221 (479)
Q Consensus 165 ~~~~~~~~~~-------~~D~Vih~A~~~~~~~~~--~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g---------~- 221 (479)
+++..++++. ++|++++|||+...-... .....+.+.+++|..|+..+.+++ ++.. +
T Consensus 67 eS~~~~~~~V~~iVg~~GlnlLinNaGi~~~y~~~~~~~r~~~~~~~~tN~v~~il~~Q~~lPLLkkaas~~~gd~~s~~ 146 (249)
T KOG1611|consen 67 ESIDNFVQEVEKIVGSDGLNLLINNAGIALSYNTVLKPSRAVLLEQYETNAVGPILLTQAFLPLLKKAASKVSGDGLSVS 146 (249)
T ss_pred HHHHHHHHHHHhhcccCCceEEEeccceeeecccccCCcHHHHHHHhhhcchhHHHHHHHHHHHHHHHhhcccCCccccc
Confidence 8887776654 789999999986432211 122345677899999988887755 2211 1
Q ss_pred cceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeee
Q 011707 222 ECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVY 298 (479)
Q Consensus 222 ~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~ 298 (479)
...||++||.+-- ... ....+...|..||.+.-.+.+.++-+. ++-++.+.||+|-
T Consensus 147 raaIinisS~~~s--~~~-------------------~~~~~~~AYrmSKaAlN~f~ksls~dL~~~~ilv~sihPGwV~ 205 (249)
T KOG1611|consen 147 RAAIINISSSAGS--IGG-------------------FRPGGLSAYRMSKAALNMFAKSLSVDLKDDHILVVSIHPGWVQ 205 (249)
T ss_pred ceeEEEeeccccc--cCC-------------------CCCcchhhhHhhHHHHHHHHHHhhhhhcCCcEEEEEecCCeEE
Confidence 1269999984321 110 133457899999999999999888764 5667777787773
Q ss_pred cCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEe
Q 011707 299 GVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQ 378 (479)
Q Consensus 299 Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni 378 (479)
-.. | +--..+.+++-+..++..+.+......+..||-
T Consensus 206 TDM---------------------------------g----------g~~a~ltveeSts~l~~~i~kL~~~hnG~ffn~ 242 (249)
T KOG1611|consen 206 TDM---------------------------------G----------GKKAALTVEESTSKLLASINKLKNEHNGGFFNR 242 (249)
T ss_pred cCC---------------------------------C----------CCCcccchhhhHHHHHHHHHhcCcccCcceEcc
Confidence 221 0 012346777888888888776555433346664
Q ss_pred C
Q 011707 379 F 379 (479)
Q Consensus 379 ~ 379 (479)
.
T Consensus 243 d 243 (249)
T KOG1611|consen 243 D 243 (249)
T ss_pred C
Confidence 3
|
|
| >KOG3019 consensus Predicted nucleoside-diphosphate sugar epimerase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-12 Score=112.83 Aligned_cols=281 Identities=17% Similarity=0.132 Sum_probs=168.6
Q ss_pred CCcEEEEEcCCchhhHHHHH-----HHHhCC----CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCcee
Q 011707 85 KAKRVMIIGGDGYCGWATAL-----HLSNKG----YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIE 155 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~-----~Ll~~G----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 155 (479)
+++..++-+++|+|+..|.. ++-.-+ |+|+++.|.+.. .+++
T Consensus 11 ~sr~a~~~~~~g~i~~nl~~~~~~~H~t~~~~a~~h~vtv~sR~pg~-----------------------------~rit 61 (315)
T KOG3019|consen 11 KSRDAVSNWSNGIIRENLGSETSCCHDTNVHSADNHAVTVLSRSPGK-----------------------------ARIT 61 (315)
T ss_pred ccccCCCCccccchhccccCcccccccCCCCcccccceEEEecCCCC-----------------------------cccc
Confidence 45667888999999988877 444444 789998886542 2333
Q ss_pred EEEcccCChH-HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCc-ceEEEeecccc
Q 011707 156 LYIGDICDFE-FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQE-CHLVKLGTMGE 233 (479)
Q Consensus 156 ~v~~Dl~d~~-~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~-~~~V~~SS~~v 233 (479)
+-+.|..-.. ++.+ .+..+.+|+.. +...++|+--..++..-+..+..+.++..+.... +.+|.+|..++
T Consensus 62 w~el~~~Gip~sc~a-----~vna~g~n~l~---P~rRWsp~fqkev~gSRi~~t~~la~aI~~aPq~~~~~Vlv~gva~ 133 (315)
T KOG3019|consen 62 WPELDFPGIPISCVA-----GVNAVGNNALL---PIRRWSPEFQKEVKGSRIRVTSKLADAINNAPQEARPTVLVSGVAV 133 (315)
T ss_pred cchhcCCCCceehHH-----HHhhhhhhccC---chhhcCHHHHHHhhcceeeHHHHHHHHHhcCCCCCCCeEEEEeeEE
Confidence 3333322111 1111 22334444432 2233344322334444455678888888876422 27999999888
Q ss_pred ccCCCC-CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhh
Q 011707 234 YGTPNI-DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 234 ~g~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
|-.... ..+|+ .+.+.++....--..-|....... ...+++++|.|.|.|.+.
T Consensus 134 y~pS~s~eY~e~--------------~~~qgfd~~srL~l~WE~aA~~~~--~~~r~~~iR~GvVlG~gG---------- 187 (315)
T KOG3019|consen 134 YVPSESQEYSEK--------------IVHQGFDILSRLCLEWEGAALKAN--KDVRVALIRIGVVLGKGG---------- 187 (315)
T ss_pred eccccccccccc--------------cccCChHHHHHHHHHHHHHhhccC--cceeEEEEEEeEEEecCC----------
Confidence 865432 33443 233334433332222232222111 248999999999999873
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHH
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAAL 391 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~ 391 (479)
|..+.++. .-++..|+|+ |+|.|.+.|||++|++..+..+++++...| +.|-.. ++.+..|+.+.
T Consensus 188 ------Ga~~~M~l--pF~~g~GGPl---GsG~Q~fpWIHv~DL~~li~~ale~~~v~G---ViNgvAP~~~~n~Ef~q~ 253 (315)
T KOG3019|consen 188 ------GALAMMIL--PFQMGAGGPL---GSGQQWFPWIHVDDLVNLIYEALENPSVKG---VINGVAPNPVRNGEFCQQ 253 (315)
T ss_pred ------cchhhhhh--hhhhccCCcC---CCCCeeeeeeehHHHHHHHHHHHhcCCCCc---eecccCCCccchHHHHHH
Confidence 22232222 2245566664 678999999999999999999999987766 788655 78999999999
Q ss_pred HHHHhhhcCCcceeeecCCC---------CcccccccccCCchHHHHcCCcccc-cHHHHHHHHH
Q 011707 392 VTKAGEKLGLDVKTISVPNP---------RVEAEEHYYNAKHTKLIELGLQPHI-LSDSLLDSLL 446 (479)
Q Consensus 392 i~~~~~~~g~~~~~~~~~~~---------~~~~~~~~~~~d~~k~~~lG~~p~~-~~~~~~~~~~ 446 (479)
+.++ ++.+.- ..+|.. +....-.-...-..|+.++||+.++ .+.|+++.+.
T Consensus 254 lg~a---L~Rp~~-~pvP~fvvqA~fG~erA~~vLeGqKV~Pqral~~Gf~f~yp~vk~Al~~i~ 314 (315)
T KOG3019|consen 254 LGSA---LSRPSW-LPVPDFVVQALFGPERATVVLEGQKVLPQRALELGFEFKYPYVKDALRAIM 314 (315)
T ss_pred HHHH---hCCCcc-cCCcHHHHHHHhCccceeEEeeCCcccchhHhhcCceeechHHHHHHHHHh
Confidence 9998 665432 222211 1111111122445667789999998 6677776553
|
|
| >KOG1199 consensus Short-chain alcohol dehydrogenase/3-hydroxyacyl-CoA dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.3e-13 Score=112.52 Aligned_cols=223 Identities=18% Similarity=0.141 Sum_probs=151.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++-..|||||..++|..-++.|+.+|..|.++|...+...+ ..+..+.++.+.+.|+++
T Consensus 7 ~kglvalvtggasglg~ataerlakqgasv~lldlp~skg~~--------------------vakelg~~~vf~padvts 66 (260)
T KOG1199|consen 7 TKGLVALVTGGASGLGKATAERLAKQGASVALLDLPQSKGAD--------------------VAKELGGKVVFTPADVTS 66 (260)
T ss_pred hcCeeEEeecCcccccHHHHHHHHhcCceEEEEeCCcccchH--------------------HHHHhCCceEEeccccCc
Confidence 357789999999999999999999999999999976543222 112235789999999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccC------cc-cccccccccchhhhhhHHHHHHHHHHHHH-c--------CCc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRS------AP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKE-F--------RQE 222 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~------~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~-~--------g~~ 222 (479)
++++..++... +.|..+||||+.. +. ....+-+++.+++++|+.||+|+++.... . |..
T Consensus 67 ekdv~aala~ak~kfgrld~~vncagia~a~ktyn~~k~~~h~ledfqrvidvn~~gtfnvirl~aglmg~nepdq~gqr 146 (260)
T KOG1199|consen 67 EKDVRAALAKAKAKFGRLDALVNCAGIAYAFKTYNVQKKKHHDLEDFQRVIDVNVLGTFNVIRLGAGLMGENEPDQNGQR 146 (260)
T ss_pred HHHHHHHHHHHHhhccceeeeeeccceeeeeeeeeecccccccHHHhhheeeeeeeeeeeeeeehhhhhcCCCCCCCCcc
Confidence 99998887643 6899999999752 11 12235567889999999999999876532 1 222
Q ss_pred ceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeec
Q 011707 223 CHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYG 299 (479)
Q Consensus 223 ~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~G 299 (479)
..+|.+.|...+. ....+..|++||.+.--|..-.+++. ||+++.+-||.+--
T Consensus 147 gviintasvaafd------------------------gq~gqaaysaskgaivgmtlpiardla~~gir~~tiapglf~t 202 (260)
T KOG1199|consen 147 GVIINTASVAAFD------------------------GQTGQAAYSASKGAIVGMTLPIARDLAGDGIRFNTIAPGLFDT 202 (260)
T ss_pred eEEEeeceeeeec------------------------CccchhhhhcccCceEeeechhhhhcccCceEEEeecccccCC
Confidence 2577776655552 22347899999998777766666653 89999998887654
Q ss_pred CCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeC
Q 011707 300 VRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQF 379 (479)
Q Consensus 300 p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~ 379 (479)
|--. + ++.-+...+.. .++++. .+-|....+..+-.+++++--.|+ +..+.
T Consensus 203 plls-------------------s-lpekv~~fla~-~ipfps------rlg~p~eyahlvqaiienp~lnge--vir~d 253 (260)
T KOG1199|consen 203 PLLS-------------------S-LPEKVKSFLAQ-LIPFPS------RLGHPHEYAHLVQAIIENPYLNGE--VIRFD 253 (260)
T ss_pred hhhh-------------------h-hhHHHHHHHHH-hCCCch------hcCChHHHHHHHHHHHhCcccCCe--EEEec
Confidence 4211 1 11112222211 112211 234566677777788888877776 55544
|
|
| >KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.1e-12 Score=119.24 Aligned_cols=175 Identities=15% Similarity=0.145 Sum_probs=128.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
|+-++|||||.+||+..+++|+++|++|+++.|..+. +....++..+...-.+..+..|.++.+
T Consensus 49 g~WAVVTGaTDGIGKayA~eLAkrG~nvvLIsRt~~K----------------L~~v~kEI~~~~~vev~~i~~Dft~~~ 112 (312)
T KOG1014|consen 49 GSWAVVTGATDGIGKAYARELAKRGFNVVLISRTQEK----------------LEAVAKEIEEKYKVEVRIIAIDFTKGD 112 (312)
T ss_pred CCEEEEECCCCcchHHHHHHHHHcCCEEEEEeCCHHH----------------HHHHHHHHHHHhCcEEEEEEEecCCCc
Confidence 5789999999999999999999999999999986542 223333444444457888999998876
Q ss_pred H----HHHHhhhcCCCEEEEcccccCc-ccccc-ccc-ccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccccc
Q 011707 166 F----LSESFKSFEPDAVVHFGEQRSA-PYSMI-DRS-RAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEY 234 (479)
Q Consensus 166 ~----~~~~~~~~~~D~Vih~A~~~~~-~~~~~-~~~-~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~ 234 (479)
. +.+.+.+..+-++|||+|.... +..+. .++ .....+.+|+.++..+.+... +.+.+ .||++||.+-.
T Consensus 113 ~~ye~i~~~l~~~~VgILVNNvG~~~~~P~~f~~~~~~~~~~ii~vN~~~~~~~t~~ilp~M~~r~~G-~IvnigS~ag~ 191 (312)
T KOG1014|consen 113 EVYEKLLEKLAGLDVGILVNNVGMSYDYPESFLKYPEGELQNIINVNILSVTLLTQLILPGMVERKKG-IIVNIGSFAGL 191 (312)
T ss_pred hhHHHHHHHhcCCceEEEEecccccCCCcHHHHhCchhhhhheeEEecchHHHHHHHhhhhhhcCCCc-eEEEecccccc
Confidence 4 5555554567789999998652 22222 222 345678999999777776654 33444 89999995311
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCC
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVR 301 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~ 301 (479)
.|....+.|++||...+.+...+.+|+ |+.+-.+-|..|-++.
T Consensus 192 ------------------------~p~p~~s~ysasK~~v~~~S~~L~~Ey~~~gI~Vq~v~p~~VaTkm 237 (312)
T KOG1014|consen 192 ------------------------IPTPLLSVYSASKAFVDFFSRCLQKEYESKGIFVQSVIPYLVATKM 237 (312)
T ss_pred ------------------------ccChhHHHHHHHHHHHHHHHHHHHHHHHhcCeEEEEeehhheeccc
Confidence 133447999999999999998888875 7889899888887664
|
|
| >KOG4039 consensus Serine/threonine kinase TIP30/CC3 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.8e-11 Score=102.66 Aligned_cols=159 Identities=16% Similarity=0.063 Sum_probs=120.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.+++|.++|.||||-.|+.+++++++.+. +|+++.|+.... ......+..+..|
T Consensus 15 ~mq~~s~fvlGAtG~~G~~llk~~~E~~~FSKV~~i~RR~~~d------------------------~at~k~v~q~~vD 70 (238)
T KOG4039|consen 15 RMQNMSGFVLGATGLCGGGLLKHAQEAPQFSKVYAILRRELPD------------------------PATDKVVAQVEVD 70 (238)
T ss_pred hhhccceEEEeccccccHHHHHHHHhcccceeEEEEEeccCCC------------------------ccccceeeeEEec
Confidence 45788999999999999999999999984 899888764211 1123567777888
Q ss_pred cCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCC
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNID 240 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~ 240 (479)
....+++...++ ++|+.|.+-|.+..... . +..++++-+-...+.++|++.|++ +|+.+||.+.-
T Consensus 71 f~Kl~~~a~~~q--g~dV~FcaLgTTRgkaG-a-----dgfykvDhDyvl~~A~~AKe~Gck-~fvLvSS~GAd------ 135 (238)
T KOG4039|consen 71 FSKLSQLATNEQ--GPDVLFCALGTTRGKAG-A-----DGFYKVDHDYVLQLAQAAKEKGCK-TFVLVSSAGAD------ 135 (238)
T ss_pred hHHHHHHHhhhc--CCceEEEeecccccccc-c-----CceEeechHHHHHHHHHHHhCCCe-EEEEEeccCCC------
Confidence 777777777776 89999999886543322 1 234577778888899999999998 99999997532
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCC
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTD 303 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~ 303 (479)
....-.|-..|...|.-+..+. --+++|+|||.+.|....
T Consensus 136 --------------------~sSrFlY~k~KGEvE~~v~eL~---F~~~~i~RPG~ll~~R~e 175 (238)
T KOG4039|consen 136 --------------------PSSRFLYMKMKGEVERDVIELD---FKHIIILRPGPLLGERTE 175 (238)
T ss_pred --------------------cccceeeeeccchhhhhhhhcc---ccEEEEecCcceeccccc
Confidence 1335678888999988765432 236899999999998754
|
|
| >KOG4288 consensus Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.6e-11 Score=104.42 Aligned_cols=227 Identities=15% Similarity=0.176 Sum_probs=153.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
-+.++.|+.||.|.++++.....|+.|-++.++.... .++.| ...++++.+|.....-
T Consensus 53 e~tlvlggnpfsgs~vlk~A~~vv~svgilsen~~k~------------------~l~sw----~~~vswh~gnsfssn~ 110 (283)
T KOG4288|consen 53 EWTLVLGGNPFSGSEVLKNATNVVHSVGILSENENKQ------------------TLSSW----PTYVSWHRGNSFSSNP 110 (283)
T ss_pred HHHhhhcCCCcchHHHHHHHHhhceeeeEeecccCcc------------------hhhCC----CcccchhhccccccCc
Confidence 4689999999999999999999999999988764311 11122 2467888888766555
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCce
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYI 246 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~~ 246 (479)
+...+. ++..|+-+++..... ..+.++|-....+...++.+.|++ +|+|+|.. -||-+
T Consensus 111 ~k~~l~--g~t~v~e~~ggfgn~---------~~m~~ing~ani~a~kaa~~~gv~-~fvyISa~-d~~~~--------- 168 (283)
T KOG4288|consen 111 NKLKLS--GPTFVYEMMGGFGNI---------ILMDRINGTANINAVKAAAKAGVP-RFVYISAH-DFGLP--------- 168 (283)
T ss_pred chhhhc--CCcccHHHhcCccch---------HHHHHhccHhhHHHHHHHHHcCCc-eEEEEEhh-hcCCC---------
Confidence 555555 788888888753311 234567888888889999999998 99999963 22222
Q ss_pred eecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHH
Q 011707 247 TINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~ 326 (479)
..-...|-.+|.++|..+.. .++++-+|+|||.|||...-.. ..-+-+..+..+.
T Consensus 169 --------------~~i~rGY~~gKR~AE~Ell~---~~~~rgiilRPGFiyg~R~v~g--------~~~pL~~vg~pl~ 223 (283)
T KOG4288|consen 169 --------------PLIPRGYIEGKREAEAELLK---KFRFRGIILRPGFIYGTRNVGG--------IKSPLHTVGEPLE 223 (283)
T ss_pred --------------CccchhhhccchHHHHHHHH---hcCCCceeeccceeecccccCc--------ccccHHhhhhhHH
Confidence 12235899999999987754 4578899999999999843211 1111222223333
Q ss_pred HHHHHHhcC-CCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHH
Q 011707 327 RFCVQAAVG-HPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTK 394 (479)
Q Consensus 327 ~~~~~~~~~-~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~ 394 (479)
.....+.+. ..+++.+ .-....+.++++|.+.+.++++|.-. +.+++.|+.++-.+
T Consensus 224 ~~~~~a~k~~~kLp~lg--~l~~ppvnve~VA~aal~ai~dp~f~----------Gvv~i~eI~~~a~k 280 (283)
T KOG4288|consen 224 MVLKFALKPLNKLPLLG--PLLAPPVNVESVALAALKAIEDPDFK----------GVVTIEEIKKAAHK 280 (283)
T ss_pred HHHHhhhchhhcCcccc--cccCCCcCHHHHHHHHHHhccCCCcC----------ceeeHHHHHHHHHH
Confidence 333333211 1233433 45578899999999999999987644 34556666665444
|
|
| >KOG1204 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-11 Score=107.13 Aligned_cols=174 Identities=14% Similarity=0.096 Sum_probs=117.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.++.+||||++.+||..++..+..++.+........... + .+.+.-..+.......+|++..
T Consensus 5 ~r~villTGaSrgiG~~~v~~i~aed~e~~r~g~~r~~a-----~-------------~~~L~v~~gd~~v~~~g~~~e~ 66 (253)
T KOG1204|consen 5 MRKVILLTGASRGIGTGSVATILAEDDEALRYGVARLLA-----E-------------LEGLKVAYGDDFVHVVGDITEE 66 (253)
T ss_pred cceEEEEecCCCCccHHHHHHHHhcchHHHHHhhhcccc-----c-------------ccceEEEecCCcceechHHHHH
Confidence 457899999999999999999999887654332211100 0 0011111112333445666666
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCcc----cccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeecc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAP----YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTM 231 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~----~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~ 231 (479)
..+++.++.. .-|+||||||..... ....|..+|.++++.|+..+.-+...+... ...+-+|++||.
T Consensus 67 ~~l~al~e~~r~k~gkr~iiI~NAG~lgdvsk~~~~~~D~~qw~ky~~~NlfS~VsL~~~~l~~lk~~p~~~~vVnvSS~ 146 (253)
T KOG1204|consen 67 QLLGALREAPRKKGGKRDIIIHNAGSLGDVSKGAVDLGDSDQWKKYWDLNLFSMVSLVQWALPKLKKSPVNGNVVNVSSL 146 (253)
T ss_pred HHHHHHHhhhhhcCCceeEEEecCCCccchhhccCCcccHHHHHHHHHhhhhhHHhhHHHHHHHhcCCCccCeEEEecch
Confidence 5555544322 479999999976431 124456678999999999999888877543 123479999995
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecC
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGV 300 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp 300 (479)
... .|...+..|+.+|++-+.+.+.++.|. ++++..++||.|--+
T Consensus 147 aav------------------------~p~~~wa~yc~~KaAr~m~f~~lA~EEp~~v~vl~~aPGvvDT~ 193 (253)
T KOG1204|consen 147 AAV------------------------RPFSSWAAYCSSKAARNMYFMVLASEEPFDVRVLNYAPGVVDTQ 193 (253)
T ss_pred hhh------------------------ccccHHHHhhhhHHHHHHHHHHHhhcCccceeEEEccCCcccch
Confidence 432 255668999999999999999988764 889999999887443
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.6e-10 Score=99.85 Aligned_cols=131 Identities=14% Similarity=0.038 Sum_probs=84.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+++||||+|+||..+++.|++.|++|+++++..... .+..+.+.. .+..+.++.+|++
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~Dl~ 75 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESG----------------QATVEEITN-LGGEALFVSYDME 75 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHh-cCCcEEEEEccCC
Confidence 45789999999999999999999999999999998753311 111122221 1345678899999
Q ss_pred ChHHHHHHhhh----c-CCCEEEEcccccCccccccc-ccccchhhhhhHHHHHHHHHHH----HHcC------CcceEE
Q 011707 163 DFEFLSESFKS----F-EPDAVVHFGEQRSAPYSMID-RSRAVFTQHNNVIGTLNVLFAM----KEFR------QECHLV 226 (479)
Q Consensus 163 d~~~~~~~~~~----~-~~D~Vih~A~~~~~~~~~~~-~~~~~~~~~~Nv~g~~~ll~~a----~~~g------~~~~~V 226 (479)
+.+++.++++. + ++|++|||||.......+.+ +++... .+|+.++......+ .+.+ ...||.
T Consensus 76 ~~~~v~~~v~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (169)
T PRK06720 76 KQGDWQRVISITLNAFSRIDMLFQNAGLYKIDSIFSRQQENDSN--VLCINDVWIEIKQLTSSFMKQQEEVVLSDLPIFG 153 (169)
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccccchhHhh--ceeccHHHHHHHHHHHHHHhcCCEEEeecCceee
Confidence 99888776542 2 69999999997654433333 211223 44555544443333 2222 112777
Q ss_pred Eeeccc
Q 011707 227 KLGTMG 232 (479)
Q Consensus 227 ~~SS~~ 232 (479)
.+||.+
T Consensus 154 ~~~~~~ 159 (169)
T PRK06720 154 IIGTKG 159 (169)
T ss_pred Eecccc
Confidence 777744
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1e-08 Score=99.52 Aligned_cols=175 Identities=15% Similarity=0.120 Sum_probs=118.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.++++|.|+|++|.||..++..|+..+ .+++++|+. . .... ..++.+. .......+.
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~-~-~~g~----------------a~Dl~~~---~~~~~v~~~ 64 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIV-G-APGV----------------AADLSHI---DTPAKVTGY 64 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecC-C-Cccc----------------ccchhhc---CcCceEEEe
Confidence 467899999999999999999998665 689999972 1 1000 0011111 112334566
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCC-
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNID- 240 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~- 240 (479)
+|+.++.+.++ +.|+||++||....+.. .....+..|+..+.++++++++++++ ++|+++|..+.......
T Consensus 65 td~~~~~~~l~--gaDvVVitaG~~~~~~~-----tR~dll~~N~~i~~~i~~~i~~~~~~-~iviv~SNPvdv~~~~~~ 136 (321)
T PTZ00325 65 ADGELWEKALR--GADLVLICAGVPRKPGM-----TRDDLFNTNAPIVRDLVAAVASSAPK-AIVGIVSNPVNSTVPIAA 136 (321)
T ss_pred cCCCchHHHhC--CCCEEEECCCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEecCcHHHHHHHHH
Confidence 67666677788 89999999997432211 12346789999999999999999998 99999995543322110
Q ss_pred ---CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCC
Q 011707 241 ---IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTD 303 (479)
Q Consensus 241 ---~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~ 303 (479)
..+ ....+...|+.+-+..-++-...++..+++..-++ +.|+|...+
T Consensus 137 ~~~~~~---------------sg~p~~~viG~g~LDs~R~r~~la~~l~v~~~~V~-~~VlGeHGd 186 (321)
T PTZ00325 137 ETLKKA---------------GVYDPRKLFGVTTLDVVRARKFVAEALGMNPYDVN-VPVVGGHSG 186 (321)
T ss_pred hhhhhc---------------cCCChhheeechhHHHHHHHHHHHHHhCcChhheE-EEEEeecCC
Confidence 011 12344566777756666777777777888888888 788887544
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.8e-08 Score=97.75 Aligned_cols=175 Identities=14% Similarity=0.045 Sum_probs=116.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++|.|||++|.||..++..|+..+ .+++++|.... ... ..++.+ ........++++
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~--~g~----------------a~Dl~~---~~~~~~i~~~~~ 76 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANT--PGV----------------AADVSH---INTPAQVRGFLG 76 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCC--Cee----------------Echhhh---CCcCceEEEEeC
Confidence 4699999999999999999999775 48999987541 110 001111 111112335445
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcC
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEE 243 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e 243 (479)
.+++.+.++ +.|+|||+||....+... ....+..|...++++.+.+++++.+ .+|+++|--+-+... -...
T Consensus 77 ~~d~~~~l~--~aDiVVitAG~~~~~g~~-----R~dll~~N~~i~~~i~~~i~~~~p~-aivivvSNPvD~~~~-i~t~ 147 (323)
T PLN00106 77 DDQLGDALK--GADLVIIPAGVPRKPGMT-----RDDLFNINAGIVKTLCEAVAKHCPN-ALVNIISNPVNSTVP-IAAE 147 (323)
T ss_pred CCCHHHHcC--CCCEEEEeCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHHCCC-eEEEEeCCCccccHH-HHHH
Confidence 556778888 899999999975432211 2446789999999999999999988 788888732211000 0000
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCC
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVR 301 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~ 301 (479)
-.. . .....+...|+.+++..+++-..+++..|++..-++- .|+|..
T Consensus 148 ~~~--~--------~s~~p~~~viG~~~LDs~Rl~~~lA~~lgv~~~~V~~-~ViGeH 194 (323)
T PLN00106 148 VLK--K--------AGVYDPKKLFGVTTLDVVRANTFVAEKKGLDPADVDV-PVVGGH 194 (323)
T ss_pred HHH--H--------cCCCCcceEEEEecchHHHHHHHHHHHhCCChhheEE-EEEEeC
Confidence 000 0 0134456789999999999999999999998888864 555544
|
|
| >COG0623 FabI Enoyl-[acyl-carrier-protein] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-06 Score=77.98 Aligned_cols=229 Identities=15% Similarity=0.221 Sum_probs=139.1
Q ss_pred CCCCcEEEEEcC--CchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGG--DGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGa--tG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.++||++||+|- ...|+..|++.|.++|.++.......+ +..+++.+.+..+ .-.+++||
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~-----------------l~krv~~la~~~~-s~~v~~cD 64 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGER-----------------LEKRVEELAEELG-SDLVLPCD 64 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHH-----------------HHHHHHHHHhhcc-CCeEEecC
Confidence 468999999985 578999999999999999877654321 3334444433322 24578999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCcc-----cccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEee
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAP-----YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLG 229 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~-----~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~S 229 (479)
+++.++++++|+.. .+|.|||+-|...-. ..+...+.+...+++-......+.++|+.. ..+..+|-++
T Consensus 65 V~~d~~i~~~f~~i~~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLt 144 (259)
T COG0623 65 VTNDESIDALFATIKKKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLT 144 (259)
T ss_pred CCCHHHHHHHHHHHHHhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEE
Confidence 99999999988754 699999999865411 111223334444455555555556666542 1223565554
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
=. |.. . ..+..+.-+..|++.|.-++.++.+. |++++.+-.|.| ..-..
T Consensus 145 Yl---gs~-----------------r----~vPnYNvMGvAKAaLEasvRyLA~dlG~~gIRVNaISAGPI----rTLAa 196 (259)
T COG0623 145 YL---GSE-----------------R----VVPNYNVMGVAKAALEASVRYLAADLGKEGIRVNAISAGPI----RTLAA 196 (259)
T ss_pred ec---cce-----------------e----ecCCCchhHHHHHHHHHHHHHHHHHhCccCeEEeeecccch----HHHHh
Confidence 21 110 0 11226788999999999999999875 688888776553 10000
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.|+ ..+..++...-.. ...+.-+.++||...-+.++..... .|+ +.++.++
T Consensus 197 -----------sgI--~~f~~~l~~~e~~---------aPl~r~vt~eeVG~tA~fLlSdLssgiTGe--i~yVD~G 249 (259)
T COG0623 197 -----------SGI--GDFRKMLKENEAN---------APLRRNVTIEEVGNTAAFLLSDLSSGITGE--IIYVDSG 249 (259)
T ss_pred -----------hcc--ccHHHHHHHHHhh---------CCccCCCCHHHhhhhHHHHhcchhcccccc--eEEEcCC
Confidence 000 0122333322222 2233446788898888888776544 354 7776653
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.3e-08 Score=87.18 Aligned_cols=103 Identities=21% Similarity=0.213 Sum_probs=73.4
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+++|||||||+|. +++.|+++|++|++++|...... +...... ....+.++.+|++|.++
T Consensus 1 m~vlVtGGtG~gg~-la~~L~~~G~~V~v~~R~~~~~~----------------~l~~~l~--~~~~i~~~~~Dv~d~~s 61 (177)
T PRK08309 1 MHALVIGGTGMLKR-VSLWLCEKGFHVSVIARREVKLE----------------NVKREST--TPESITPLPLDYHDDDA 61 (177)
T ss_pred CEEEEECcCHHHHH-HHHHHHHCcCEEEEEECCHHHHH----------------HHHHHhh--cCCcEEEEEccCCCHHH
Confidence 57999999988876 99999999999999887533110 0011011 12467888999999999
Q ss_pred HHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCc---ceEEEee
Q 011707 167 LSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQE---CHLVKLG 229 (479)
Q Consensus 167 ~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~---~~~V~~S 229 (479)
+.++++.. .+|++|+. +.+.++.++..+|++.|++ .+|+|+=
T Consensus 62 v~~~i~~~l~~~g~id~lv~~---------------------vh~~~~~~~~~~~~~~gv~~~~~~~~h~~ 111 (177)
T PRK08309 62 LKLAIKSTIEKNGPFDLAVAW---------------------IHSSAKDALSVVCRELDGSSETYRLFHVL 111 (177)
T ss_pred HHHHHHHHHHHcCCCeEEEEe---------------------ccccchhhHHHHHHHHccCCCCceEEEEe
Confidence 98887643 46666654 3566888999999998854 1466654
|
|
| >PRK13656 trans-2-enoyl-CoA reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.5e-07 Score=90.55 Aligned_cols=96 Identities=19% Similarity=0.133 Sum_probs=62.6
Q ss_pred CCcEEEEEcCCchhhHH--HHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWA--TALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~--l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+|++|||||++++|.+ +++.| +.|++|+++++..... ....+..-+.+... +....+..+..+..+.+|++
T Consensus 40 ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~~~~~~~-~~~~~tagwy~~~a----~~~~a~~~G~~a~~i~~DVs 113 (398)
T PRK13656 40 GPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVFFEKPGT-EKKTGTAGWYNSAA----FDKFAKAAGLYAKSINGDAF 113 (398)
T ss_pred CCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEecCcchh-hhcccccccchHHH----HHHHHHhcCCceEEEEcCCC
Confidence 47899999999999999 89999 9999998887532110 00000000001111 11111112345678899999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQR 186 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~ 186 (479)
+.++++++++.. ++|+||||+|..
T Consensus 114 s~E~v~~lie~I~e~~G~IDiLVnSaA~~ 142 (398)
T PRK13656 114 SDEIKQKVIELIKQDLGQVDLVVYSLASP 142 (398)
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCccC
Confidence 998888777643 599999999965
|
|
| >PRK09620 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=5.9e-08 Score=89.74 Aligned_cols=85 Identities=20% Similarity=0.148 Sum_probs=59.3
Q ss_pred CCcEEEEEcCC----------------chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc
Q 011707 85 KAKRVMIIGGD----------------GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS 148 (479)
Q Consensus 85 ~~~~vLVtGat----------------G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (479)
+||+||||+|. ||+|.+|+++|+++|++|++++........ ..
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g~~~~~~~-------------------~~-- 60 (229)
T PRK09620 2 KGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHGYFAEKPN-------------------DI-- 60 (229)
T ss_pred CCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeCCCcCCCc-------------------cc--
Confidence 58999999875 999999999999999999999864321100 00
Q ss_pred cCCCceeEEEcccCChHHHHHHhhhcCCCEEEEcccccCccc
Q 011707 149 LTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPY 190 (479)
Q Consensus 149 ~~~~~v~~v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~ 190 (479)
.....+..+.+|....+.+.+++...++|+|||+||......
T Consensus 61 ~~~~~~~~V~s~~d~~~~l~~~~~~~~~D~VIH~AAvsD~~~ 102 (229)
T PRK09620 61 NNQLELHPFEGIIDLQDKMKSIITHEKVDAVIMAAAGSDWVV 102 (229)
T ss_pred CCceeEEEEecHHHHHHHHHHHhcccCCCEEEECccccceec
Confidence 001234456664333467788886557999999999865433
|
|
| >KOG1478 consensus 3-keto sterol reductase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.4e-07 Score=82.69 Aligned_cols=185 Identities=13% Similarity=0.117 Sum_probs=115.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCe-----EEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYE-----VAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~-----V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.|.+||||++.+||-.|+.+|++...+ ++...|..+ ..+++-.++.++......+++++..|
T Consensus 3 RKvalITGanSglGl~i~~RLl~~~De~~~ltl~ltcR~~~-------------kae~vc~~lk~f~p~~~i~~~yvlvD 69 (341)
T KOG1478|consen 3 RKVALITGANSGLGLAICKRLLAEDDENVRLTLCLTCRNMS-------------KAEAVCAALKAFHPKSTIEVTYVLVD 69 (341)
T ss_pred ceEEEEecCCCcccHHHHHHHHhccCCceeEEEEEEeCChh-------------HHHHHHHHHHHhCCCceeEEEEEEEe
Confidence 468999999999999999999998654 222223221 11122223333333333579999999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCccc----------------------------ccccccccchhhhhhHH
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAPY----------------------------SMIDRSRAVFTQHNNVI 207 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~----------------------------~~~~~~~~~~~~~~Nv~ 207 (479)
+++..++.++.++. +.|.|+-|||+...+. .....++...+++.||.
T Consensus 70 ~sNm~Sv~~A~~di~~rf~~ld~iylNAg~~~~~gi~w~~avf~~fsnpv~amt~pt~~~~t~G~is~D~lg~iFetnVF 149 (341)
T KOG1478|consen 70 VSNMQSVFRASKDIKQRFQRLDYIYLNAGIMPNPGINWKAAVFGLFSNPVIAMTSPTEGLLTQGKISADGLGEIFETNVF 149 (341)
T ss_pred hhhHHHHHHHHHHHHHHhhhccEEEEccccCCCCcccHHHHHHHHhhchhHHhcCchhhhhhcceecccchhhHhhhccc
Confidence 99988777765533 6899999999752211 01122344567899999
Q ss_pred HHHHHHHHHHH---cCCcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH
Q 011707 208 GTLNVLFAMKE---FRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA 284 (479)
Q Consensus 208 g~~~ll~~a~~---~g~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~ 284 (479)
|..-+++.... ++....+|.+||...-. ..++=+++. ..+...+|..||.+...+--...+.
T Consensus 150 Ghfyli~~l~pll~~~~~~~lvwtSS~~a~k---k~lsleD~q------------~~kg~~pY~sSKrl~DlLh~A~~~~ 214 (341)
T KOG1478|consen 150 GHFYLIRELEPLLCHSDNPQLVWTSSRMARK---KNLSLEDFQ------------HSKGKEPYSSSKRLTDLLHVALNRN 214 (341)
T ss_pred chhhhHhhhhhHhhcCCCCeEEEEeeccccc---ccCCHHHHh------------hhcCCCCcchhHHHHHHHHHHHhcc
Confidence 99888765543 23333899999943211 111111111 2244578999999998876655554
Q ss_pred h---CCceEEeecCeee
Q 011707 285 W---GIRATDLNQGVVY 298 (479)
Q Consensus 285 ~---gl~~~ivRp~~v~ 298 (479)
. |+.-.++.||...
T Consensus 215 ~~~~g~~qyvv~pg~~t 231 (341)
T KOG1478|consen 215 FKPLGINQYVVQPGIFT 231 (341)
T ss_pred ccccchhhhcccCceee
Confidence 2 5666667776644
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.4e-07 Score=88.73 Aligned_cols=119 Identities=13% Similarity=0.114 Sum_probs=77.3
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC-------CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG-------YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIG 159 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G-------~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 159 (479)
.+|+||||+|+||.+++..|+..+ .+|+++|+......-. + ...++.+ .......
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~--g------------~~~Dl~d----~~~~~~~ 64 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALE--G------------VVMELQD----CAFPLLK 64 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCcccccc--c------------eeeehhh----ccccccC
Confidence 479999999999999999999854 5899999854210000 0 0000000 0001223
Q ss_pred ccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeec
Q 011707 160 DICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGT 230 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS 230 (479)
|+....++.+.++ ++|+|||+||...... .++ ...++.|+.-...+.+..+++. .+..++.+|.
T Consensus 65 ~~~~~~~~~~~l~--~aDiVI~tAG~~~~~~--~~R---~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsN 129 (325)
T cd01336 65 SVVATTDPEEAFK--DVDVAILVGAMPRKEG--MER---KDLLKANVKIFKEQGEALDKYAKKNVKVLVVGN 129 (325)
T ss_pred CceecCCHHHHhC--CCCEEEEeCCcCCCCC--CCH---HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 4444456777787 8999999999754321 111 3467899999999999998885 4546666664
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=5.9e-07 Score=88.42 Aligned_cols=98 Identities=24% Similarity=0.286 Sum_probs=76.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
+|+|||.|| |+||+.++..|+++| .+|++.||.... .++.......+++.++.|+.|.
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d~~V~iAdRs~~~--------------------~~~i~~~~~~~v~~~~vD~~d~ 59 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGDGEVTIADRSKEK--------------------CARIAELIGGKVEALQVDAADV 59 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCCceEEEEeCCHHH--------------------HHHHHhhccccceeEEecccCh
Confidence 578999999 999999999999999 899999986432 2222222334899999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+++.++++ +.|+|||++.... + .+++++|.+.|+ ++|=+|
T Consensus 60 ~al~~li~--~~d~VIn~~p~~~-----------------~----~~i~ka~i~~gv--~yvDts 99 (389)
T COG1748 60 DALVALIK--DFDLVINAAPPFV-----------------D----LTILKACIKTGV--DYVDTS 99 (389)
T ss_pred HHHHHHHh--cCCEEEEeCCchh-----------------h----HHHHHHHHHhCC--CEEEcc
Confidence 99999999 6699999985311 1 268889988884 455444
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.2e-06 Score=85.34 Aligned_cols=168 Identities=14% Similarity=0.180 Sum_probs=111.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC-------eEEEEeccccc--ccccccCCCCCCccchhhhhhhhhcccC---CCc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY-------EVAIVDSLIRR--LFDHQLGLDSLTPIASIHDRLRCWKSLT---GKN 153 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~-------~V~~~dr~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 153 (479)
.++|.|+|++|.+|..++..|+..|. +++.+|..... .... ..++.+.. ..+
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~----------------a~Dl~~~~~~~~~~ 65 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGV----------------AMELEDCAFPLLAE 65 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCccccccee----------------ehhhhhccccccCc
Confidence 46899999999999999999998874 78888874321 1110 01111111 012
Q ss_pred eeEEEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCC-cceEEEeecc-
Q 011707 154 IELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ-ECHLVKLGTM- 231 (479)
Q Consensus 154 v~~v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~-~~~~V~~SS~- 231 (479)
+.+. . ...+.++ +.|+||.+||...-+.. +. ...+..|+.-.+.+....++++. ...++.+|--
T Consensus 66 ~~i~-~------~~~~~~~--daDivvitaG~~~k~g~--tR---~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 66 IVIT-D------DPNVAFK--DADWALLVGAKPRGPGM--ER---ADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred eEEe-c------CcHHHhC--CCCEEEEeCCCCCCCCC--cH---HHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 2221 1 1234555 89999999997543221 21 34578899999999999999884 6567766631
Q ss_pred --ccccCCCCCCcCCceeecCCCCCCCCCCC-CCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCC
Q 011707 232 --GEYGTPNIDIEEGYITINHNGRTDTLPYP-KQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT 302 (479)
Q Consensus 232 --~v~g~~~~~~~e~~~~~~~~~~~~~~~~~-~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~ 302 (479)
-+|-. ... .+ ..+...|+.+++..+++...+++.+|++...+|..+|||+..
T Consensus 132 D~~t~~~----~k~---------------sg~~p~~~ViG~t~LDs~Rl~~~la~~lgv~~~~v~~~~V~GeHG 186 (322)
T cd01338 132 NTNALIA----MKN---------------APDIPPDNFTAMTRLDHNRAKSQLAKKAGVPVTDVKNMVIWGNHS 186 (322)
T ss_pred HHHHHHH----HHH---------------cCCCChHheEEehHHHHHHHHHHHHHHhCcChhHeEEEEEEeCCc
Confidence 00100 000 11 234568999999999999999999999999999999999974
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK06732 phosphopantothenate--cysteine ligase; Validated | Back alignment and domain information |
|---|
Probab=98.44 E-value=6e-07 Score=83.37 Aligned_cols=74 Identities=20% Similarity=0.162 Sum_probs=48.9
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC--hH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD--FE 165 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d--~~ 165 (479)
|++=-.+|||+|.+|+++|+++|++|+++++..... .....++.++.++-.+ .+
T Consensus 18 R~itN~SSG~iG~aLA~~L~~~G~~V~li~r~~~~~------------------------~~~~~~v~~i~v~s~~~m~~ 73 (229)
T PRK06732 18 RGITNHSTGQLGKIIAETFLAAGHEVTLVTTKTAVK------------------------PEPHPNLSIIEIENVDDLLE 73 (229)
T ss_pred eeecCccchHHHHHHHHHHHhCCCEEEEEECccccc------------------------CCCCCCeEEEEEecHHHHHH
Confidence 333336899999999999999999999998642100 0001345555543322 23
Q ss_pred HHHHHhhhcCCCEEEEcccccC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRS 187 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~ 187 (479)
.+.+.+. ++|+||||||...
T Consensus 74 ~l~~~~~--~~DivIh~AAvsd 93 (229)
T PRK06732 74 TLEPLVK--DHDVLIHSMAVSD 93 (229)
T ss_pred HHHHHhc--CCCEEEeCCccCC
Confidence 4555555 7899999999765
|
|
| >PF13950 Epimerase_Csub: UDP-glucose 4-epimerase C-term subunit; PDB: 1EK5_A 1I3K_B 1I3M_B 1HZJ_A 1EK6_A 1I3N_A 1I3L_A 2CNB_B 1GY8_D 1NAI_A | Back alignment and domain information |
|---|
Probab=98.40 E-value=5.4e-07 Score=64.72 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=37.2
Q ss_pred HHHHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhccc
Q 011707 392 VTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDR 455 (479)
Q Consensus 392 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~ 455 (479)
+.++ .|.++++.+.+. ...+....+.|++|+++ |||+|++++++++++..+|+..++..
T Consensus 2 ~e~v---tG~~i~~~~~~r--R~GD~~~~~Ad~~kA~~~LgW~p~~~L~~~i~~~w~W~~~np~G 61 (62)
T PF13950_consen 2 FEKV---TGKKIPVEYAPR--RPGDPAHLVADISKAREELGWKPKYSLEDMIRDAWNWQKKNPNG 61 (62)
T ss_dssp HHHH---HTS---EEEE-----TT--SEE-B--HHHHHHC----SSSHHHHHHHHHHHHHHSTTT
T ss_pred cHHH---HCCCCCceECCC--CCCchhhhhCCHHHHHHHhCCCcCCCHHHHHHHHHHHHHHCcCC
Confidence 4566 889999998874 45566667899999987 99999999999999999999887654
|
... |
| >PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=3.7e-06 Score=84.23 Aligned_cols=78 Identities=19% Similarity=0.235 Sum_probs=60.0
Q ss_pred CCCCcEEEEEcC----------------CchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhh
Q 011707 83 PSKAKRVMIIGG----------------DGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146 (479)
Q Consensus 83 ~~~~~~vLVtGa----------------tG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (479)
.+++|+|||||| +|.+|.+++++|+++|++|+++++.... .
T Consensus 185 ~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~~~~~~--~--------------------- 241 (399)
T PRK05579 185 DLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVSGPVNL--P--------------------- 241 (399)
T ss_pred ccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeCCCccc--c---------------------
Confidence 468999999999 8999999999999999999998764310 0
Q ss_pred cccCCCceeEEEcccCChHHHHHHhhhc--CCCEEEEcccccCc
Q 011707 147 KSLTGKNIELYIGDICDFEFLSESFKSF--EPDAVVHFGEQRSA 188 (479)
Q Consensus 147 ~~~~~~~v~~v~~Dl~d~~~~~~~~~~~--~~D~Vih~A~~~~~ 188 (479)
...+ ....|+++.+++.+++.+. .+|++|||||+...
T Consensus 242 ---~~~~--~~~~dv~~~~~~~~~v~~~~~~~DilI~~Aav~d~ 280 (399)
T PRK05579 242 ---TPAG--VKRIDVESAQEMLDAVLAALPQADIFIMAAAVADY 280 (399)
T ss_pred ---CCCC--cEEEccCCHHHHHHHHHHhcCCCCEEEEccccccc
Confidence 0012 2357999988887777532 58999999998654
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.2e-05 Score=81.32 Aligned_cols=94 Identities=27% Similarity=0.304 Sum_probs=66.1
Q ss_pred EEEEcCCchhhHHHHHHHHhCC-C-eEEEEecccccccccccCCCCCCccchhhhhhhhhc-ccCCCceeEEEcccCChH
Q 011707 89 VMIIGGDGYCGWATALHLSNKG-Y-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK-SLTGKNIELYIGDICDFE 165 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G-~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~Dl~d~~ 165 (479)
|+|.|| |++|+.+++.|++++ + +|++.||.... ++... .....++..+..|+.|.+
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~va~r~~~~--------------------~~~~~~~~~~~~~~~~~~d~~~~~ 59 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVTVADRNPEK--------------------AERLAEKLLGDRVEAVQVDVNDPE 59 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEEEEESSHHH--------------------HHHHHT--TTTTEEEEE--TTTHH
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEEEEECCHHH--------------------HHHHHhhccccceeEEEEecCCHH
Confidence 799999 999999999999996 4 89999986542 11211 114568999999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEe
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKL 228 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~ 228 (479)
++.++++ +.|+||||++.. ....++++|.+.| +++|-+
T Consensus 60 ~l~~~~~--~~dvVin~~gp~---------------------~~~~v~~~~i~~g--~~yvD~ 97 (386)
T PF03435_consen 60 SLAELLR--GCDVVINCAGPF---------------------FGEPVARACIEAG--VHYVDT 97 (386)
T ss_dssp HHHHHHT--TSSEEEE-SSGG---------------------GHHHHHHHHHHHT---EEEES
T ss_pred HHHHHHh--cCCEEEECCccc---------------------hhHHHHHHHHHhC--CCeecc
Confidence 9999999 789999999742 1125777777777 345553
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.6e-05 Score=74.77 Aligned_cols=94 Identities=19% Similarity=0.063 Sum_probs=70.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||+||||. |+.|++.|.+.|++|++..+...+... +...+...+..+..|.++
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~g~~v~~s~~t~~~~~~-----------------------~~~~g~~~v~~g~l~~~~ 56 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQGIEILVTVTTSEGKHL-----------------------YPIHQALTVHTGALDPQE 56 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhCCCeEEEEEccCCcccc-----------------------ccccCCceEEECCCCHHH
Confidence 58999999999 999999999999999987664432100 011223445566678888
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQE 222 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~ 222 (479)
+.+.+++.++|+||+.+.. --...+.|+.++|++.|..
T Consensus 57 l~~~l~~~~i~~VIDAtHP------------------fA~~is~~a~~a~~~~~ip 94 (256)
T TIGR00715 57 LREFLKRHSIDILVDATHP------------------FAAQITTNATAVCKELGIP 94 (256)
T ss_pred HHHHHHhcCCCEEEEcCCH------------------HHHHHHHHHHHHHHHhCCc
Confidence 9999988789999998742 1235567899999999865
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.2e-05 Score=76.50 Aligned_cols=115 Identities=18% Similarity=0.072 Sum_probs=75.7
Q ss_pred cEEEEEcCCchhhHHHHHHHHh---CCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 87 KRVMIIGGDGYCGWATALHLSN---KGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~---~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
|+|+|+||+|.+|.+++..|.. .+++++++|+... .... .-++.+. .....+.+ .+
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~-~~g~----------------alDl~~~--~~~~~i~~--~~ 59 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPV-TPGV----------------AVDLSHI--PTAVKIKG--FS 59 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCC-Ccce----------------ehhhhcC--CCCceEEE--eC
Confidence 6899999999999999998855 2467888887532 1000 0011110 11122333 22
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
.+++.+.++ ++|+||.++|..+.+.. ++ ...+..|...+.++++.+++.+.+ ++|.+.|
T Consensus 60 ~~d~~~~l~--~~DiVIitaG~~~~~~~--~R---~dll~~N~~i~~~ii~~i~~~~~~-~ivivvs 118 (312)
T PRK05086 60 GEDPTPALE--GADVVLISAGVARKPGM--DR---SDLFNVNAGIVKNLVEKVAKTCPK-ACIGIIT 118 (312)
T ss_pred CCCHHHHcC--CCCEEEEcCCCCCCCCC--CH---HHHHHHHHHHHHHHHHHHHHhCCC-eEEEEcc
Confidence 344556666 79999999997543221 11 345788999999999999999988 7777776
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.5e-05 Score=77.93 Aligned_cols=106 Identities=16% Similarity=0.156 Sum_probs=72.3
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC-------eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY-------EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~-------~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
+|.||||+|.+|..++..|+..|. +++.+|+.... + .......|
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~--~---------------------------~~~g~~~D 52 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIASGELFGDDQPVILHLLDIPPAM--K---------------------------ALEGVVME 52 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCccCCCCceEEEEEecCCcc--C---------------------------ccceeeee
Confidence 689999999999999999998652 58888875420 0 01111122
Q ss_pred cCCh-----------HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEe
Q 011707 161 ICDF-----------EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKL 228 (479)
Q Consensus 161 l~d~-----------~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~ 228 (479)
+.|. ....+.++ ++|+|||+||....+...+ ...+..|..-.+.+....++.+ ....++.+
T Consensus 53 l~d~~~~~~~~~~i~~~~~~~~~--~aDiVVitAG~~~~~g~tR-----~dll~~N~~i~~~i~~~i~~~~~~~~iiivv 125 (323)
T cd00704 53 LQDCAFPLLKGVVITTDPEEAFK--DVDVAILVGAFPRKPGMER-----ADLLRKNAKIFKEQGEALNKVAKPTVKVLVV 125 (323)
T ss_pred hhhhcccccCCcEEecChHHHhC--CCCEEEEeCCCCCCcCCcH-----HHHHHHhHHHHHHHHHHHHHhCCCCeEEEEe
Confidence 2211 23456677 8999999999754332222 3467889999999999999984 66566666
Q ss_pred e
Q 011707 229 G 229 (479)
Q Consensus 229 S 229 (479)
|
T Consensus 126 s 126 (323)
T cd00704 126 G 126 (323)
T ss_pred C
Confidence 5
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal | Back alignment and domain information |
|---|
Probab=98.12 E-value=4.6e-06 Score=77.37 Aligned_cols=72 Identities=19% Similarity=0.121 Sum_probs=48.9
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFL 167 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~ 167 (479)
|++=-.++|+||.+++++|+++|++|+++++... . . ......+|+.+.+++
T Consensus 17 R~itN~SSGgIG~AIA~~la~~Ga~Vvlv~~~~~---------------------l---~-----~~~~~~~Dv~d~~s~ 67 (227)
T TIGR02114 17 RSITNHSTGHLGKIITETFLSAGHEVTLVTTKRA---------------------L---K-----PEPHPNLSIREIETT 67 (227)
T ss_pred eeecCCcccHHHHHHHHHHHHCCCEEEEEcChhh---------------------c---c-----cccCCcceeecHHHH
Confidence 3333356999999999999999999998864211 0 0 000134788887776
Q ss_pred HHHhhh----c-CCCEEEEcccccCc
Q 011707 168 SESFKS----F-EPDAVVHFGEQRSA 188 (479)
Q Consensus 168 ~~~~~~----~-~~D~Vih~A~~~~~ 188 (479)
+++++. . ++|++|||||+...
T Consensus 68 ~~l~~~v~~~~g~iDiLVnnAgv~d~ 93 (227)
T TIGR02114 68 KDLLITLKELVQEHDILIHSMAVSDY 93 (227)
T ss_pred HHHHHHHHHHcCCCCEEEECCEeccc
Confidence 665432 1 58999999997543
|
In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity. |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.9e-05 Score=70.47 Aligned_cols=82 Identities=21% Similarity=0.252 Sum_probs=59.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++++++|+||+|.+|+.+++.|++.|++|++++|..... .+..+.+... .+.....+|+.
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~----------------~~l~~~l~~~--~~~~~~~~~~~ 86 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERA----------------QKAADSLRAR--FGEGVGAVETS 86 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHH----------------HHHHHHHHhh--cCCcEEEeeCC
Confidence 34678999999999999999999999999999988753211 0111111111 13445667888
Q ss_pred ChHHHHHHhhhcCCCEEEEccc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGE 184 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~ 184 (479)
+.+++.++++ +.|+||++..
T Consensus 87 ~~~~~~~~~~--~~diVi~at~ 106 (194)
T cd01078 87 DDAARAAAIK--GADVVFAAGA 106 (194)
T ss_pred CHHHHHHHHh--cCCEEEECCC
Confidence 9888888888 7999998764
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR01758 MDH_euk_cyt malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.8e-05 Score=74.38 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=95.7
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC-------eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY-------EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~-------~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
+|.|+||+|.+|..++..|+..|. +++.+|+..... .......|
T Consensus 1 ~V~IiGaaG~VG~~~a~~l~~~~~~~~~~e~el~LiD~~~~~~-----------------------------~a~g~~~D 51 (324)
T TIGR01758 1 RVVVTGAAGQIGYALLPMIARGRMLGKDQPIILHLLDIPPAMK-----------------------------VLEGVVME 51 (324)
T ss_pred CEEEECCCcHHHHHHHHHHHhccccCCCCccEEEEEecCCccc-----------------------------ccceeEee
Confidence 589999999999999999998543 588888753310 11122233
Q ss_pred cCChH-----------HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEe
Q 011707 161 ICDFE-----------FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKL 228 (479)
Q Consensus 161 l~d~~-----------~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~ 228 (479)
+.|.. ...+.++ ++|+|||+||....... +....+..|+.-.+.+.+...+++ .+..++.+
T Consensus 52 l~d~~~~~~~~~~~~~~~~~~~~--~aDiVVitAG~~~~~~~-----tr~~ll~~N~~i~k~i~~~i~~~~~~~~iiivv 124 (324)
T TIGR01758 52 LMDCAFPLLDGVVPTHDPAVAFT--DVDVAILVGAFPRKEGM-----ERRDLLSKNVKIFKEQGRALDKLAKKDCKVLVV 124 (324)
T ss_pred hhcccchhcCceeccCChHHHhC--CCCEEEEcCCCCCCCCC-----cHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEe
Confidence 33222 2345666 89999999997432211 124567899999999999999984 66566666
Q ss_pred eccc-----cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCC
Q 011707 229 GTMG-----EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTD 303 (479)
Q Consensus 229 SS~~-----v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~ 303 (479)
|--. +.-.....+ + +...=..+.+..-++-...++..+++..-++-..|+|...+
T Consensus 125 sNPvDv~t~v~~~~sg~~------------------~--~~vig~gt~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG~ 184 (324)
T TIGR01758 125 GNPANTNALVLSNYAPSI------------------P--PKNFSALTRLDHNRALAQVAERAGVPVSDVKNVIIWGNHSS 184 (324)
T ss_pred CCcHHHHHHHHHHHcCCC------------------C--cceEEEeeehHHHHHHHHHHHHhCCChhhceEeEEEECCCC
Confidence 6310 110000000 0 01111122334445555566667888777776677786543
|
This model represents the NAD-dependent cytosolic malate dehydrogenase from eukaryotes. The enzyme from pig has been studied by X-ray crystallography |
| >TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.7e-05 Score=77.72 Aligned_cols=110 Identities=14% Similarity=0.192 Sum_probs=73.8
Q ss_pred CCCCcEEEEEcC----------------CchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhh
Q 011707 83 PSKAKRVMIIGG----------------DGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146 (479)
Q Consensus 83 ~~~~~~vLVtGa----------------tG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (479)
.+++|+|||||| ||.+|.+++++|..+|++|+++.+.....
T Consensus 182 ~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~~~~~----------------------- 238 (390)
T TIGR00521 182 DLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGPVSLL----------------------- 238 (390)
T ss_pred ccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCCCccC-----------------------
Confidence 468999999998 46799999999999999999887532210
Q ss_pred cccCCCceeEEEcccCChHHH-HHHhhhc--CCCEEEEcccccCccccccccc---ccchhhhhhHHHHHHHHHHHHHcC
Q 011707 147 KSLTGKNIELYIGDICDFEFL-SESFKSF--EPDAVVHFGEQRSAPYSMIDRS---RAVFTQHNNVIGTLNVLFAMKEFR 220 (479)
Q Consensus 147 ~~~~~~~v~~v~~Dl~d~~~~-~~~~~~~--~~D~Vih~A~~~~~~~~~~~~~---~~~~~~~~Nv~g~~~ll~~a~~~g 220 (479)
....+ ...|+.+.+++ +++++.. ++|++||+||+........... .....+.+|+.-+-.++...++..
T Consensus 239 ---~~~~~--~~~~v~~~~~~~~~~~~~~~~~~D~~i~~Aavsd~~~~~~~~~Ki~~~~~~~~l~L~~~pdil~~l~~~~ 313 (390)
T TIGR00521 239 ---TPPGV--KSIKVSTAEEMLEAALNELAKDFDIFISAAAVADFKPKTVFEGKIKKQGEELSLKLVKNPDIIAEVRKIK 313 (390)
T ss_pred ---CCCCc--EEEEeccHHHHHHHHHHhhcccCCEEEEccccccccccccccccccccCCceeEEEEeCcHHHHHHHhhC
Confidence 01122 45788888877 5555322 5899999999875433211110 001234567777888888777654
|
This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity. |
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00021 Score=61.05 Aligned_cols=116 Identities=19% Similarity=0.213 Sum_probs=74.8
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|.|+|++|.+|.+++..|...+ .+++++|+........ ...++..............+| .
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~-------------a~Dl~~~~~~~~~~~~i~~~~---~ 64 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGE-------------ALDLSHASAPLPSPVRITSGD---Y 64 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHH-------------HHHHHHHHHGSTEEEEEEESS---G
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceee-------------ehhhhhhhhhccccccccccc---c
Confidence 589999999999999999999996 5899999875422111 001111111111223333332 2
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+.++ +.|+||-+||....+...+ ...+..|..-.+.+.+...+.+.+..++.+|
T Consensus 65 ----~~~~--~aDivvitag~~~~~g~sR-----~~ll~~N~~i~~~~~~~i~~~~p~~~vivvt 118 (141)
T PF00056_consen 65 ----EALK--DADIVVITAGVPRKPGMSR-----LDLLEANAKIVKEIAKKIAKYAPDAIVIVVT 118 (141)
T ss_dssp ----GGGT--TESEEEETTSTSSSTTSSH-----HHHHHHHHHHHHHHHHHHHHHSTTSEEEE-S
T ss_pred ----cccc--cccEEEEeccccccccccH-----HHHHHHhHhHHHHHHHHHHHhCCccEEEEeC
Confidence 2344 7899999999753222211 3457889999999999999998775666655
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >KOG2733 consensus Uncharacterized membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.85 E-value=6.2e-05 Score=71.70 Aligned_cols=81 Identities=20% Similarity=0.246 Sum_probs=61.3
Q ss_pred EEEEEcCCchhhHHHHHHHHh----CCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCC---CceeEEEcc
Q 011707 88 RVMIIGGDGYCGWATALHLSN----KGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTG---KNIELYIGD 160 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~----~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~v~~D 160 (479)
.++|.||+||-|.+++++++. .|...-+..|+.. .+.+.++...+..+ .....+.+|
T Consensus 7 DvVIyGASGfTG~yivee~v~~~~~~~~slavAGRn~~----------------KL~~vL~~~~~k~~~~ls~~~i~i~D 70 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQVFEGLSLAVAGRNEK----------------KLQEVLEKVGEKTGTDLSSSVILIAD 70 (423)
T ss_pred eEEEEccccccceeeHHHHhhhhcccCceEEEecCCHH----------------HHHHHHHHHhhccCCCcccceEEEec
Confidence 589999999999999999999 5677777666543 23344444433321 233388899
Q ss_pred cCChHHHHHHhhhcCCCEEEEccccc
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFGEQR 186 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A~~~ 186 (479)
.+|++++.+..+ ...+|+||+|..
T Consensus 71 ~~n~~Sl~emak--~~~vivN~vGPy 94 (423)
T KOG2733|consen 71 SANEASLDEMAK--QARVIVNCVGPY 94 (423)
T ss_pred CCCHHHHHHHHh--hhEEEEeccccc
Confidence 999999999999 789999999964
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.9e-05 Score=75.70 Aligned_cols=73 Identities=30% Similarity=0.343 Sum_probs=50.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhC-C-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNK-G-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~-G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.+++++|+||||+|+||+.++++|+++ | .++++++|.... +..+.. ++..+|
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~r--------------------l~~La~------el~~~~ 205 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQER--------------------LQELQA------ELGGGK 205 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHH--------------------HHHHHH------Hhcccc
Confidence 467899999999999999999999865 5 588888764321 111111 011234
Q ss_pred cCChHHHHHHhhhcCCCEEEEccccc
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFGEQR 186 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A~~~ 186 (479)
+. .+.+++. ++|+|||+++..
T Consensus 206 i~---~l~~~l~--~aDiVv~~ts~~ 226 (340)
T PRK14982 206 IL---SLEEALP--EADIVVWVASMP 226 (340)
T ss_pred HH---hHHHHHc--cCCEEEECCcCC
Confidence 33 3567777 799999999853
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0006 Score=57.86 Aligned_cols=124 Identities=23% Similarity=0.279 Sum_probs=75.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC---CCCCCccchhhhhhhhhcccC-CCceeEEEcc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG---LDSLTPIASIHDRLRCWKSLT-GKNIELYIGD 160 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~D 160 (479)
.++|+|.|+ |.+|..+++.|++.|. +++++|...=...+.... ...-..........+.+.+.. .-+++.+..+
T Consensus 2 ~~~v~iiG~-G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 2 NKRVLIIGA-GGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp T-EEEEEST-SHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCEEEEECc-CHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 468999997 9999999999999997 788887643222111110 000001111111222222222 3467777777
Q ss_pred cCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccccc
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g 235 (479)
+ +.+...++++ ++|+||.+.. |...-..+.+.|++.+ ..+|+.++.+.+|
T Consensus 81 ~-~~~~~~~~~~--~~d~vi~~~d--------------------~~~~~~~l~~~~~~~~--~p~i~~~~~g~~G 130 (135)
T PF00899_consen 81 I-DEENIEELLK--DYDIVIDCVD--------------------SLAARLLLNEICREYG--IPFIDAGVNGFYG 130 (135)
T ss_dssp C-SHHHHHHHHH--TSSEEEEESS--------------------SHHHHHHHHHHHHHTT---EEEEEEEETTEE
T ss_pred c-cccccccccc--CCCEEEEecC--------------------CHHHHHHHHHHHHHcC--CCEEEEEeecCEE
Confidence 7 4566778887 7899998853 3344456778888887 4688888766554
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00057 Score=67.28 Aligned_cols=126 Identities=21% Similarity=0.241 Sum_probs=78.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCc-------cchhhhhhhhhcccC-CCc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTP-------IASIHDRLRCWKSLT-GKN 153 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~-~~~ 153 (479)
.++.++|+|+|+ |.+|.++++.|++.|. +++++|+..-...+. +...+.. ........+.+.++. .-.
T Consensus 21 ~L~~~~VlIiG~-GglGs~va~~La~aGvg~i~lvD~D~ve~sNL--~RQ~l~~~~d~~~g~~Ka~aa~~~l~~inp~v~ 97 (338)
T PRK12475 21 KIREKHVLIVGA-GALGAANAEALVRAGIGKLTIADRDYVEWSNL--QRQQLYTEEDAKQKKPKAIAAKEHLRKINSEVE 97 (338)
T ss_pred hhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccccccc--CccccccHHHccCCccHHHHHHHHHHHHCCCcE
Confidence 456789999997 8899999999999997 788888753111110 0000100 011111122233332 235
Q ss_pred eeEEEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccc
Q 011707 154 IELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGE 233 (479)
Q Consensus 154 v~~v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v 233 (479)
++.+..|++ .+.++++++ ++|+||.+.. |...-..+-++|.+.+ ..+|+.+..+.
T Consensus 98 i~~~~~~~~-~~~~~~~~~--~~DlVid~~D--------------------~~~~r~~in~~~~~~~--ip~i~~~~~g~ 152 (338)
T PRK12475 98 IVPVVTDVT-VEELEELVK--EVDLIIDATD--------------------NFDTRLLINDLSQKYN--IPWIYGGCVGS 152 (338)
T ss_pred EEEEeccCC-HHHHHHHhc--CCCEEEEcCC--------------------CHHHHHHHHHHHHHcC--CCEEEEEeccc
Confidence 667777875 456778887 7999998752 3333345668888887 36888887766
Q ss_pred ccC
Q 011707 234 YGT 236 (479)
Q Consensus 234 ~g~ 236 (479)
+|.
T Consensus 153 ~G~ 155 (338)
T PRK12475 153 YGV 155 (338)
T ss_pred EEE
Confidence 664
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00017 Score=69.55 Aligned_cols=84 Identities=18% Similarity=0.131 Sum_probs=58.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCe-EEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYE-VAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.++|+++|+|| |++|++++..|++.|++ |++++|...... ...+..+.+... ...+.....|+.
T Consensus 124 ~~~k~vlI~GA-GGagrAia~~La~~G~~~V~I~~R~~~~~~-------------~a~~l~~~l~~~-~~~~~~~~~d~~ 188 (289)
T PRK12548 124 VKGKKLTVIGA-GGAATAIQVQCALDGAKEITIFNIKDDFYE-------------RAEQTAEKIKQE-VPECIVNVYDLN 188 (289)
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCchHHH-------------HHHHHHHHHhhc-CCCceeEEechh
Confidence 46789999999 89999999999999986 999988531000 001111112111 124456678888
Q ss_pred ChHHHHHHhhhcCCCEEEEccc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGE 184 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~ 184 (479)
+.+++.+.++ ..|+||||--
T Consensus 189 ~~~~~~~~~~--~~DilINaTp 208 (289)
T PRK12548 189 DTEKLKAEIA--SSDILVNATL 208 (289)
T ss_pred hhhHHHhhhc--cCCEEEEeCC
Confidence 8888888887 6799999864
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00069 Score=66.74 Aligned_cols=126 Identities=22% Similarity=0.246 Sum_probs=79.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCc-------cchhhhhhhhhcccCC-Cc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTP-------IASIHDRLRCWKSLTG-KN 153 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~-~~ 153 (479)
.++..+|+|.|+ |++|..++..|++.|. +++++|...-...+. ....+.. ........+.+.++.. -.
T Consensus 21 ~L~~~~VlVvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL--~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~ 97 (339)
T PRK07688 21 KLREKHVLIIGA-GALGTANAEMLVRAGVGKVTIVDRDYVEWSNL--QRQQLYTESDVKNNLPKAVAAKKRLEEINSDVR 97 (339)
T ss_pred HhcCCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCccCHHHc--CccccccHHHhcCCCcHHHHHHHHHHHHCCCcE
Confidence 456789999998 9999999999999997 899998743111111 0000110 0111111222333322 25
Q ss_pred eeEEEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccc
Q 011707 154 IELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGE 233 (479)
Q Consensus 154 v~~v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v 233 (479)
++.+..+++ .+.+.++++ ++|+||.+.. |...-..+.++|.+.+ +.+|+.++.+.
T Consensus 98 v~~~~~~~~-~~~~~~~~~--~~DlVid~~D--------------------n~~~r~~ln~~~~~~~--iP~i~~~~~g~ 152 (339)
T PRK07688 98 VEAIVQDVT-AEELEELVT--GVDLIIDATD--------------------NFETRFIVNDAAQKYG--IPWIYGACVGS 152 (339)
T ss_pred EEEEeccCC-HHHHHHHHc--CCCEEEEcCC--------------------CHHHHHHHHHHHHHhC--CCEEEEeeeee
Confidence 666667775 455677787 7899998852 4444456778888887 46999888777
Q ss_pred ccC
Q 011707 234 YGT 236 (479)
Q Consensus 234 ~g~ 236 (479)
||.
T Consensus 153 ~G~ 155 (339)
T PRK07688 153 YGL 155 (339)
T ss_pred eeE
Confidence 775
|
|
| >COG4982 3-oxoacyl-[acyl-carrier protein] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0013 Score=67.09 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=110.2
Q ss_pred CCCCcEEEEEcCC-chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc------CCCcee
Q 011707 83 PSKAKRVMIIGGD-GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL------TGKNIE 155 (479)
Q Consensus 83 ~~~~~~vLVtGat-G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~ 155 (479)
....+.+|||||+ |-||..++..||..|.+|++...+-+ .++.+.++.+ .+..+-
T Consensus 393 ~y~d~valVTGA~~gSIaa~Vv~~LL~gGAtVI~TTS~~s------------------~~r~efyr~LYa~~a~~ga~Lw 454 (866)
T COG4982 393 TYGDKVALVTGASKGSIAAAVVARLLAGGATVIATTSRLS------------------EERTEFYRSLYARHARYGAALW 454 (866)
T ss_pred CcccceEEEecCCCcchHHHHHHHHHhCCcEEEEEccccc------------------HHHHHHHHHHHHhhCCCCceEE
Confidence 4568899999975 88999999999999999987643221 1222222222 234577
Q ss_pred EEEcccCChHHHHHHhhhc-------------------CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHH
Q 011707 156 LYIGDICDFEFLSESFKSF-------------------EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAM 216 (479)
Q Consensus 156 ~v~~Dl~d~~~~~~~~~~~-------------------~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a 216 (479)
++..++.+..+++++++-. .+|.+|-+|++.-...-..-....+..+++-+....+++-..
T Consensus 455 vVpaN~~SysDVdAlIewIg~eq~~t~g~~s~~~k~a~~ptll~PFAAp~v~G~l~~agsraE~~~rilLw~V~Rliggl 534 (866)
T COG4982 455 VVPANMGSYSDVDALIEWIGDEQTETVGPQSIHIKLAWTPTLLFPFAAPRVSGELADAGSRAEFAMRILLWNVLRLIGGL 534 (866)
T ss_pred EEeccccchhhHHHHHHHhccccccccCCcceecccccCcceeeecccCCccCccccCCchHHHHHHHHHHHHHHHHHHh
Confidence 7888888887787776532 367899999875433111111112333566666667777666
Q ss_pred HHcCC----c--ceEEEeecc--ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---
Q 011707 217 KEFRQ----E--CHLVKLGTM--GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--- 285 (479)
Q Consensus 217 ~~~g~----~--~~~V~~SS~--~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--- 285 (479)
++.+. . .++|.-.|- +.| .....|+.+|+..+.++..+..+.
T Consensus 535 ~~~~s~r~v~~R~hVVLPgSPNrG~F---------------------------GgDGaYgEsK~aldav~~RW~sEs~Wa 587 (866)
T COG4982 535 KKQGSSRGVDTRLHVVLPGSPNRGMF---------------------------GGDGAYGESKLALDAVVNRWHSESSWA 587 (866)
T ss_pred hhhccccCcccceEEEecCCCCCCcc---------------------------CCCcchhhHHHHHHHHHHHhhccchhh
Confidence 65442 1 245555541 112 224689999999999998887764
Q ss_pred -CCceEEeecCeeecCC
Q 011707 286 -GIRATDLNQGVVYGVR 301 (479)
Q Consensus 286 -gl~~~ivRp~~v~Gp~ 301 (479)
.+.++--+.|++-|-+
T Consensus 588 ~~vsl~~A~IGWtrGTG 604 (866)
T COG4982 588 ARVSLAHALIGWTRGTG 604 (866)
T ss_pred HHHHHhhhheeeecccc
Confidence 2445555666666654
|
|
| >PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00033 Score=62.54 Aligned_cols=77 Identities=19% Similarity=0.210 Sum_probs=44.8
Q ss_pred CCcEEEEEc----------------CCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc
Q 011707 85 KAKRVMIIG----------------GDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS 148 (479)
Q Consensus 85 ~~~~vLVtG----------------atG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (479)
+||+||||+ .||-.|.+|+++++.+|++|+.+.....-.
T Consensus 2 ~gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~------------------------- 56 (185)
T PF04127_consen 2 KGKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLP------------------------- 56 (185)
T ss_dssp TT-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS---------------------------
T ss_pred CCCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHCCCEEEEEecCcccc-------------------------
Confidence 467777775 589999999999999999999987542100
Q ss_pred cCCCceeEEEcccCChHHHHHHhhhc--CCCEEEEcccccCcc
Q 011707 149 LTGKNIELYIGDICDFEFLSESFKSF--EPDAVVHFGEQRSAP 189 (479)
Q Consensus 149 ~~~~~v~~v~~Dl~d~~~~~~~~~~~--~~D~Vih~A~~~~~~ 189 (479)
...++..+.. ...+++.+++... ..|++||+|++....
T Consensus 57 -~p~~~~~i~v--~sa~em~~~~~~~~~~~Di~I~aAAVsDf~ 96 (185)
T PF04127_consen 57 -PPPGVKVIRV--ESAEEMLEAVKELLPSADIIIMAAAVSDFR 96 (185)
T ss_dssp ---TTEEEEE---SSHHHHHHHHHHHGGGGSEEEE-SB--SEE
T ss_pred -ccccceEEEe--cchhhhhhhhccccCcceeEEEecchhhee
Confidence 0135665554 3444443333221 569999999987643
|
These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A. |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0016 Score=60.58 Aligned_cols=127 Identities=20% Similarity=0.176 Sum_probs=76.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC----CCCCCccchhhhhhhhhcccCC-CceeE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG----LDSLTPIASIHDRLRCWKSLTG-KNIEL 156 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 156 (479)
.++.++|+|.|+ |.+|.++++.|++.|. +++++|...-...+.... ...+ .........+.+.++.. -+++.
T Consensus 18 ~L~~~~VlivG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di-G~~Ka~~~~~~l~~~np~~~i~~ 95 (228)
T cd00757 18 KLKNARVLVVGA-GGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADV-GQPKAEAAAERLRAINPDVEIEA 95 (228)
T ss_pred HHhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhC-CChHHHHHHHHHHHhCCCCEEEE
Confidence 345789999996 9999999999999996 677776543211111000 0000 01111112222333322 25666
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
+..+++ .+.+.+.++ ++|+||.+.. |...-..+.++|.+.+ ..+|+.+..+.+|.
T Consensus 96 ~~~~i~-~~~~~~~~~--~~DvVi~~~d--------------------~~~~r~~l~~~~~~~~--ip~i~~g~~g~~g~ 150 (228)
T cd00757 96 YNERLD-AENAEELIA--GYDLVLDCTD--------------------NFATRYLINDACVKLG--KPLVSGAVLGFEGQ 150 (228)
T ss_pred ecceeC-HHHHHHHHh--CCCEEEEcCC--------------------CHHHHHHHHHHHHHcC--CCEEEEEeccCEEE
Confidence 666663 456777777 7999998863 2333345778888887 46888877665554
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00093 Score=55.84 Aligned_cols=97 Identities=15% Similarity=0.198 Sum_probs=68.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++++|+++|. | -|.+++..|.+.|++|+++|..+.. .+.. ....+.++.+|+.++
T Consensus 16 ~~~kileIG~-G-fG~~vA~~L~~~G~~ViaIDi~~~a--------------------V~~a---~~~~~~~v~dDlf~p 70 (134)
T PRK04148 16 KNKKIVELGI-G-FYFKVAKKLKESGFDVIVIDINEKA--------------------VEKA---KKLGLNAFVDDLFNP 70 (134)
T ss_pred cCCEEEEEEe-c-CCHHHHHHHHHCCCEEEEEECCHHH--------------------HHHH---HHhCCeEEECcCCCC
Confidence 4578999997 6 8999999999999999999986542 1111 113678999999887
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
+ -++-+ ++|.|+-+= .-.+-...+++.|++.+....|..+|+
T Consensus 71 ~--~~~y~--~a~liysir--------------------pp~el~~~~~~la~~~~~~~~i~~l~~ 112 (134)
T PRK04148 71 N--LEIYK--NAKLIYSIR--------------------PPRDLQPFILELAKKINVPLIIKPLSG 112 (134)
T ss_pred C--HHHHh--cCCEEEEeC--------------------CCHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 6 22333 688888541 122334479999999998755555554
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00096 Score=64.67 Aligned_cols=167 Identities=14% Similarity=0.069 Sum_probs=98.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|.|+|++|.+|.+++..|+..| .+++++|.. . .... ..++.+.. ........ ...
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~-~-a~g~----------------alDL~~~~-~~~~i~~~--~~~ 59 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV-N-TPGV----------------AADLSHIN-TPAKVTGY--LGP 59 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC-c-ccee----------------ehHhHhCC-CcceEEEe--cCC
Confidence 489999999999999999999887 478999875 1 1110 00111111 11111111 011
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccc-------cccCC
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMG-------EYGTP 237 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~-------v~g~~ 237 (479)
+++.+.++ +.|+||-+||...-+...+ ...++.|..-.+.+.+..++.+.+..++.+|--. .|--.
T Consensus 60 ~~~y~~~~--daDivvitaG~~~k~g~tR-----~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPvDv~~~i~t~~~~ 132 (310)
T cd01337 60 EELKKALK--GADVVVIPAGVPRKPGMTR-----DDLFNINAGIVRDLATAVAKACPKALILIISNPVNSTVPIAAEVLK 132 (310)
T ss_pred CchHHhcC--CCCEEEEeCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCchhhHHHHHHHHHH
Confidence 23455666 8999999999743222111 3467889999999999999998876777766421 11000
Q ss_pred CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCC
Q 011707 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVR 301 (479)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~ 301 (479)
... ...+....+..-+-.-++-...++..|++..-++ ++|+|..
T Consensus 133 ----~~s---------------~~p~~rviG~~~LDs~R~~~~la~~l~v~~~~V~-~~v~GeH 176 (310)
T cd01337 133 ----KAG---------------VYDPKRLFGVTTLDVVRANTFVAELLGLDPAKVN-VPVIGGH 176 (310)
T ss_pred ----Hhc---------------CCCHHHEEeeechHHHHHHHHHHHHhCcCHHHEE-EEEEecC
Confidence 000 0011122233334445556666777787777777 6788865
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0021 Score=58.29 Aligned_cols=127 Identities=20% Similarity=0.186 Sum_probs=74.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC--C----CCCCccchhhhhhhhhcccCC-Ccee
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG--L----DSLTPIASIHDRLRCWKSLTG-KNIE 155 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~-~~v~ 155 (479)
++..+|+|.|+ |.+|.++++.|+..|. +++++|...-...+.... . ... .........+.+.++.+ -+++
T Consensus 17 L~~s~VlviG~-gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~i-G~~Ka~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 17 LRSAKVLIIGA-GALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNS-GMNRAAASYEFLQELNPNVKLS 94 (198)
T ss_pred HhhCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhc-CchHHHHHHHHHHHHCCCCEEE
Confidence 45679999998 5599999999999996 588887643211111100 0 000 00011111222333322 2555
Q ss_pred EEEcccCC-hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccc
Q 011707 156 LYIGDICD-FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEY 234 (479)
Q Consensus 156 ~v~~Dl~d-~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~ 234 (479)
.+..++.+ .+...+.+. .+|+||.+-. |......+-+.|++.+ ..+|+.++.+.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~--~~dvVi~~~d--------------------~~~~~~~ln~~c~~~~--ip~i~~~~~G~~ 150 (198)
T cd01485 95 IVEEDSLSNDSNIEEYLQ--KFTLVIATEE--------------------NYERTAKVNDVCRKHH--IPFISCATYGLI 150 (198)
T ss_pred EEecccccchhhHHHHHh--CCCEEEECCC--------------------CHHHHHHHHHHHHHcC--CCEEEEEeecCE
Confidence 56566643 344566677 7899996632 2333445678888888 469999887777
Q ss_pred cC
Q 011707 235 GT 236 (479)
Q Consensus 235 g~ 236 (479)
|.
T Consensus 151 G~ 152 (198)
T cd01485 151 GY 152 (198)
T ss_pred EE
Confidence 64
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0023 Score=58.29 Aligned_cols=127 Identities=20% Similarity=0.171 Sum_probs=74.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC----CCCCCccchhhhhhhhhcccCC-CceeE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG----LDSLTPIASIHDRLRCWKSLTG-KNIEL 156 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 156 (479)
.++.++|+|.|+ |.+|.++++.|++.|. +++++|...-...+.... ...+. ........+.+.++.. -.++.
T Consensus 18 kl~~~~VlviG~-GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG-~~Ka~~~~~~l~~~np~v~i~~ 95 (202)
T TIGR02356 18 RLLNSHVLIIGA-GGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVG-RPKVEVAAQRLRELNSDIQVTA 95 (202)
T ss_pred HhcCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCC-ChHHHHHHHHHHHhCCCCEEEE
Confidence 456789999996 9999999999999996 788888643211111000 00000 0011111222222221 23444
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
+..++. .+.+.+.++ ++|+||.+.. |...-..+.+.|++.+ +.+|+.++.+.+|.
T Consensus 96 ~~~~i~-~~~~~~~~~--~~D~Vi~~~d--------------------~~~~r~~l~~~~~~~~--ip~i~~~~~g~~G~ 150 (202)
T TIGR02356 96 LKERVT-AENLELLIN--NVDLVLDCTD--------------------NFATRYLINDACVALG--TPLISAAVVGFGGQ 150 (202)
T ss_pred ehhcCC-HHHHHHHHh--CCCEEEECCC--------------------CHHHHHHHHHHHHHcC--CCEEEEEeccCeEE
Confidence 444453 355677777 7899998753 3334445778888887 46888887666654
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0023 Score=59.56 Aligned_cols=128 Identities=20% Similarity=0.205 Sum_probs=74.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCC----CCCCccchhhhhhhhhcccC-CCceeEE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGL----DSLTPIASIHDRLRCWKSLT-GKNIELY 157 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~v~~v 157 (479)
+++.+|+|.|+ |++|.++++.|++.|. +++++|...-...+..... ..+..........+.+.+.. .-.++.+
T Consensus 25 L~~~~VlIiG~-GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~ 103 (231)
T PRK08328 25 LKKAKVAVVGV-GGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKPLSAKWKLERFNSDIKIETF 103 (231)
T ss_pred HhCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHHHHHHHHHHHhCCCCEEEEE
Confidence 45778999997 9999999999999996 6888875432111110000 00000000000011122221 2245555
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCC
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTP 237 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~ 237 (479)
...+ +.+.+.++++ ++|+||.+.. |...-..+-++|++.+ +.+|+.++.+.+|..
T Consensus 104 ~~~~-~~~~~~~~l~--~~D~Vid~~d--------------------~~~~r~~l~~~~~~~~--ip~i~g~~~g~~G~v 158 (231)
T PRK08328 104 VGRL-SEENIDEVLK--GVDVIVDCLD--------------------NFETRYLLDDYAHKKG--IPLVHGAVEGTYGQV 158 (231)
T ss_pred eccC-CHHHHHHHHh--cCCEEEECCC--------------------CHHHHHHHHHHHHHcC--CCEEEEeeccCEEEE
Confidence 5555 3455777787 7899998753 3333345567888887 468988887777653
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0032 Score=58.91 Aligned_cols=127 Identities=20% Similarity=0.145 Sum_probs=73.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCC----CCCCccchhhhhhhhhcccC-CCceeE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGL----DSLTPIASIHDRLRCWKSLT-GKNIEL 156 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~v~~ 156 (479)
.+++.+|+|.|+ |++|..+++.|++.|. +++++|...-...+..... ..+. ........+.+.++. .-.++.
T Consensus 21 ~L~~~~VlvvG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG-~~Ka~~a~~~l~~inp~v~i~~ 98 (240)
T TIGR02355 21 ALKASRVLIVGL-GGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIG-QPKVESAKDALTQINPHIAINP 98 (240)
T ss_pred HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCC-CcHHHHHHHHHHHHCCCcEEEE
Confidence 356779999997 9999999999999995 6777776432211110000 0000 011111122222222 124555
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
+...++ .+.+.++++ ++|+||.+.. |......+-++|.+.+ +.+|+.++.+.+|.
T Consensus 99 ~~~~i~-~~~~~~~~~--~~DlVvd~~D--------------------~~~~r~~ln~~~~~~~--ip~v~~~~~g~~G~ 153 (240)
T TIGR02355 99 INAKLD-DAELAALIA--EHDIVVDCTD--------------------NVEVRNQLNRQCFAAK--VPLVSGAAIRMEGQ 153 (240)
T ss_pred EeccCC-HHHHHHHhh--cCCEEEEcCC--------------------CHHHHHHHHHHHHHcC--CCEEEEEecccEeE
Confidence 544443 355677777 7899998853 3334455678888887 46888776555553
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.001 Score=64.82 Aligned_cols=120 Identities=23% Similarity=0.206 Sum_probs=71.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
|+|.|+|+||++|..++..|+..|. +|+++|+..... . .+ .... ++.+.+ . ..+.... +. .+
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~--~-l~-~~~~---dl~d~~---~-~~~~~~~-i~--~~-- 64 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLE--K-LK-GLRL---DIYDAL---A-AAGIDAE-IK--IS-- 64 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECccccc--c-cc-cccc---hhhhch---h-ccCCCcE-EE--EC--
Confidence 5899999999999999999999986 599999843100 0 00 0000 000000 0 0011111 11 11
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
.+.+ .++ +.|+||-++|...-+.. +. ...+..|+.-.+.+++...+.+.+..+|.+++
T Consensus 65 ~d~~-~l~--~aDiViitag~p~~~~~--~r---~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~n 122 (309)
T cd05294 65 SDLS-DVA--GSDIVIITAGVPRKEGM--SR---LDLAKKNAKIVKKYAKQIAEFAPDTKILVVTN 122 (309)
T ss_pred CCHH-HhC--CCCEEEEecCCCCCCCC--CH---HHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 1133 366 89999999986432111 11 23567899999999998888776656777665
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0017 Score=60.17 Aligned_cols=74 Identities=30% Similarity=0.456 Sum_probs=57.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+++|.|+ |-+|..+++.|.+.|++|+++++.... .++... .......+.+|-+|++.
T Consensus 1 m~iiIiG~-G~vG~~va~~L~~~g~~Vv~Id~d~~~--------------------~~~~~~-~~~~~~~v~gd~t~~~~ 58 (225)
T COG0569 1 MKIIIIGA-GRVGRSVARELSEEGHNVVLIDRDEER--------------------VEEFLA-DELDTHVVIGDATDEDV 58 (225)
T ss_pred CEEEEECC-cHHHHHHHHHHHhCCCceEEEEcCHHH--------------------HHHHhh-hhcceEEEEecCCCHHH
Confidence 57889987 999999999999999999999986542 111100 01468889999999999
Q ss_pred HHHH-hhhcCCCEEEEccc
Q 011707 167 LSES-FKSFEPDAVVHFGE 184 (479)
Q Consensus 167 ~~~~-~~~~~~D~Vih~A~ 184 (479)
++++ +. .+|+|+-..+
T Consensus 59 L~~agi~--~aD~vva~t~ 75 (225)
T COG0569 59 LEEAGID--DADAVVAATG 75 (225)
T ss_pred HHhcCCC--cCCEEEEeeC
Confidence 9888 55 7899996554
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0041 Score=58.43 Aligned_cols=126 Identities=20% Similarity=0.131 Sum_probs=74.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC----CCCCCccchhhhhhhhhcccC-CCceeE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG----LDSLTPIASIHDRLRCWKSLT-GKNIEL 156 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~v~~ 156 (479)
.++.++|+|.|+ |.+|..+++.|++.|. +++++|...-...+.... ...+ .........+.+.++. .-.++.
T Consensus 29 ~L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dv-G~~Ka~~a~~~l~~lnp~v~i~~ 106 (245)
T PRK05690 29 KLKAARVLVVGL-GGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDATI-GQPKVESARAALARINPHIAIET 106 (245)
T ss_pred HhcCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChhhC-CChHHHHHHHHHHHHCCCCEEEE
Confidence 456789999998 9999999999999995 788877643211111000 0000 0011111122222222 124555
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccccc
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g 235 (479)
+...++ .+.+.+.++ ++|+||.+.. |...-..+.++|.+.+ +.+|+.++.+.+|
T Consensus 107 ~~~~i~-~~~~~~~~~--~~DiVi~~~D--------------------~~~~r~~ln~~~~~~~--ip~v~~~~~g~~G 160 (245)
T PRK05690 107 INARLD-DDELAALIA--GHDLVLDCTD--------------------NVATRNQLNRACFAAK--KPLVSGAAIRMEG 160 (245)
T ss_pred EeccCC-HHHHHHHHh--cCCEEEecCC--------------------CHHHHHHHHHHHHHhC--CEEEEeeeccCCc
Confidence 666554 445677777 7999998853 3333345678888887 4688776655444
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0018 Score=63.08 Aligned_cols=116 Identities=20% Similarity=0.200 Sum_probs=73.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|.|+|+ |.+|..++..|+..| ++|+++|+........ ...+...............+ +.
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~-------------a~dL~~~~~~~~~~~~i~~~---~~ 63 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLIDINEEKAEGE-------------ALDLEDALAFLPSPVKIKAG---DY 63 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHh-------------HhhHHHHhhccCCCeEEEcC---CH
Confidence 47999996 999999999999998 6899999854321110 01111111111122222222 22
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
+ .++ +.|+||+++|...-+...+ ...+..|..-.+.+.+..++.+.+..++.+|-
T Consensus 64 ---~-~l~--~aDIVIitag~~~~~g~~R-----~dll~~N~~i~~~~~~~i~~~~~~~~vivvsN 118 (306)
T cd05291 64 ---S-DCK--DADIVVITAGAPQKPGETR-----LDLLEKNAKIMKSIVPKIKASGFDGIFLVASN 118 (306)
T ss_pred ---H-HhC--CCCEEEEccCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 2 245 8999999999743222111 34578899999999999999887766776663
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0025 Score=62.23 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=75.1
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCC--CceeEEEcc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTG--KNIELYIGD 160 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~v~~D 160 (479)
.+++|.|+|+ |.+|..++..|+..|. +++.+|+....... ...++.+... .++....+
T Consensus 5 ~~~ki~iiGa-G~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g----------------~~~Dl~~~~~~~~~~~i~~~- 66 (315)
T PRK00066 5 QHNKVVLVGD-GAVGSSYAYALVNQGIADELVIIDINKEKAEG----------------DAMDLSHAVPFTSPTKIYAG- 66 (315)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCCchhHH----------------HHHHHHhhccccCCeEEEeC-
Confidence 4679999998 9999999999999986 79999985432111 1111211110 12333222
Q ss_pred cCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ . +.++ +.|+||.+||...-+...+ ...+..|..-.+.+++..++.+.+..++.+|
T Consensus 67 --~---~-~~~~--~adivIitag~~~k~g~~R-----~dll~~N~~i~~~i~~~i~~~~~~~~vivvs 122 (315)
T PRK00066 67 --D---Y-SDCK--DADLVVITAGAPQKPGETR-----LDLVEKNLKIFKSIVGEVMASGFDGIFLVAS 122 (315)
T ss_pred --C---H-HHhC--CCCEEEEecCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 2 2 2356 8999999999743222111 3457889999999999999988775666665
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0038 Score=62.05 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=76.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC----CCCCCccchhhhhhhhhcccCC-CceeE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG----LDSLTPIASIHDRLRCWKSLTG-KNIEL 156 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 156 (479)
.++..+|||.|+ |++|..+++.|++.|. +++++|...-...+.... ...+ .........+.+.++.. -.++.
T Consensus 25 ~L~~~~VlivG~-GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~di-G~~Ka~~a~~~l~~~np~v~v~~ 102 (355)
T PRK05597 25 SLFDAKVAVIGA-GGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGV-GQPKAESAREAMLALNPDVKVTV 102 (355)
T ss_pred HHhCCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHC-CChHHHHHHHHHHHHCCCcEEEE
Confidence 456789999998 9999999999999996 688887643211111000 0000 01112222223333322 24555
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
+...++. +...+.++ ++|+||.+.. |...-..+.++|.+.+ +.||+.++.+.+|.
T Consensus 103 ~~~~i~~-~~~~~~~~--~~DvVvd~~d--------------------~~~~r~~~n~~c~~~~--ip~v~~~~~g~~g~ 157 (355)
T PRK05597 103 SVRRLTW-SNALDELR--DADVILDGSD--------------------NFDTRHLASWAAARLG--IPHVWASILGFDAQ 157 (355)
T ss_pred EEeecCH-HHHHHHHh--CCCEEEECCC--------------------CHHHHHHHHHHHHHcC--CCEEEEEEecCeEE
Confidence 5566653 45566777 7999998863 3333345667888887 46888887665553
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0014 Score=64.06 Aligned_cols=168 Identities=13% Similarity=0.140 Sum_probs=97.3
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC-------eEEEEeccccc--ccccccCCCCCCccchhhhhhhhhcccC---CCce
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY-------EVAIVDSLIRR--LFDHQLGLDSLTPIASIHDRLRCWKSLT---GKNI 154 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~-------~V~~~dr~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v 154 (479)
-+|.|+|++|++|.+++..|+..|. +++.+|..... ... ...++.+.. ..++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g----------------~a~Dl~~~~~~~~~~~ 67 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEG----------------VAMELEDCAFPLLAGV 67 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccch----------------HHHHHhhccccccCCc
Confidence 4899999999999999999998873 78888875321 111 111111111 0112
Q ss_pred eEEEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCC-cceEEEeecc--
Q 011707 155 ELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ-ECHLVKLGTM-- 231 (479)
Q Consensus 155 ~~v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~-~~~~V~~SS~-- 231 (479)
.. .. ...+.++ +.|+||.+||...-+.. +. ...+..|..-.+.+...+++.+. +..++.+|--
T Consensus 68 ~i-~~------~~~~~~~--daDvVVitAG~~~k~g~--tR---~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvD 133 (323)
T TIGR01759 68 VA-TT------DPEEAFK--DVDAALLVGAFPRKPGM--ER---ADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPAN 133 (323)
T ss_pred EE-ec------ChHHHhC--CCCEEEEeCCCCCCCCC--cH---HHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcHH
Confidence 21 11 1234455 89999999997432221 21 34678899999999999999886 6566666531
Q ss_pred -ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCC
Q 011707 232 -GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT 302 (479)
Q Consensus 232 -~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~ 302 (479)
-+|-. .... ....+....+.+.+..-++-...++..+++..-++-..|+|...
T Consensus 134 v~t~v~----~k~s--------------~g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~~V~GeHG 187 (323)
T TIGR01759 134 TNALIA----SKNA--------------PDIPPKNFSAMTRLDHNRAKYQLAAKAGVPVSDVKNVIIWGNHS 187 (323)
T ss_pred HHHHHH----HHHc--------------CCCCHHHEEEeeHHHHHHHHHHHHHHhCcChHHeEEeEEEecCC
Confidence 00000 0000 00011122333455555555556666788777776666777644
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >COG3268 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00063 Score=64.50 Aligned_cols=76 Identities=17% Similarity=0.228 Sum_probs=55.0
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
..++|-|||||.|..++++|.++|.+-.+..|+.. ++..+....+.....+. +-+++.
T Consensus 7 ~d~iiYGAtGy~G~lvae~l~~~g~~~aLAgRs~~--------------------kl~~l~~~LG~~~~~~p--~~~p~~ 64 (382)
T COG3268 7 YDIIIYGATGYAGGLVAEYLAREGLTAALAGRSSA--------------------KLDALRASLGPEAAVFP--LGVPAA 64 (382)
T ss_pred eeEEEEccccchhHHHHHHHHHcCCchhhccCCHH--------------------HHHHHHHhcCccccccC--CCCHHH
Confidence 46899999999999999999999988755555432 22333222233444444 344888
Q ss_pred HHHHhhhcCCCEEEEccccc
Q 011707 167 LSESFKSFEPDAVVHFGEQR 186 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~ 186 (479)
+++... +.++|+||+|..
T Consensus 65 ~~~~~~--~~~VVlncvGPy 82 (382)
T COG3268 65 LEAMAS--RTQVVLNCVGPY 82 (382)
T ss_pred HHHHHh--cceEEEeccccc
Confidence 999988 899999999964
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0021 Score=62.41 Aligned_cols=115 Identities=17% Similarity=0.063 Sum_probs=74.1
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|.|+|++|.+|.+++..|+..|. +++++|... ..... .++.+.. ......... +.+
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~--a~g~a----------------~DL~~~~-~~~~i~~~~--~~~ 59 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG--AAGVA----------------ADLSHIP-TAASVKGFS--GEE 59 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC--CcEEE----------------chhhcCC-cCceEEEec--CCC
Confidence 589999999999999999998874 788888754 11110 0111111 111111100 112
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
++.+.++ +.|+||-+||....+...+ ...+..|..-.+.+.+...+.+.+..|+.+|-
T Consensus 60 ~~~~~~~--daDivvitaG~~~~~g~~R-----~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN 117 (312)
T TIGR01772 60 GLENALK--GADVVVIPAGVPRKPGMTR-----DDLFNVNAGIVKDLVAAVAESCPKAMILVITN 117 (312)
T ss_pred chHHHcC--CCCEEEEeCCCCCCCCccH-----HHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 2456677 8999999999743322222 34678899999999999999887756666664
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0022 Score=64.15 Aligned_cols=35 Identities=26% Similarity=0.600 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSL 119 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~ 119 (479)
++++|.|.||||++|..|++.|+++ +.+|+.+.+.
T Consensus 37 ~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~ 72 (381)
T PLN02968 37 EKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTAD 72 (381)
T ss_pred cccEEEEECCCChHHHHHHHHHHhCCCCeEEEEECh
Confidence 5679999999999999999999999 6799888764
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0062 Score=52.12 Aligned_cols=121 Identities=21% Similarity=0.246 Sum_probs=70.7
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC----CCCCCccchhhhhhhhhcccC-CCceeEEEccc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG----LDSLTPIASIHDRLRCWKSLT-GKNIELYIGDI 161 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl 161 (479)
+|+|.|+ |.+|.++++.|++.|. +++++|...-...+.... ...+ .........+.+.++. .-.++.+..++
T Consensus 1 ~VliiG~-GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~v-G~~Ka~~~~~~l~~~~p~v~i~~~~~~~ 78 (143)
T cd01483 1 RVLLVGL-GGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADI-GKPKAEVAARRLNELNPGVNVTAVPEGI 78 (143)
T ss_pred CEEEECC-CHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHC-CChHHHHHHHHHHHHCCCcEEEEEeeec
Confidence 5899997 9999999999999997 688887643211111000 0000 0011111122222222 23455555555
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccccc
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g 235 (479)
.+.. ..+.+. ++|+||.+.. |......+.++|++.+ ..+|..++.+.+|
T Consensus 79 ~~~~-~~~~~~--~~diVi~~~d--------------------~~~~~~~l~~~~~~~~--i~~i~~~~~g~~g 127 (143)
T cd01483 79 SEDN-LDDFLD--GVDLVIDAID--------------------NIAVRRALNRACKELG--IPVIDAGGLGLGG 127 (143)
T ss_pred Chhh-HHHHhc--CCCEEEECCC--------------------CHHHHHHHHHHHHHcC--CCEEEEcCCCcEE
Confidence 4433 355666 7999998863 3444556778999887 4688887765443
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0077 Score=57.01 Aligned_cols=125 Identities=14% Similarity=0.104 Sum_probs=69.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCC---ccchhhhhhhhhcccCC-CceeEE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLT---PIASIHDRLRCWKSLTG-KNIELY 157 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~v~~v 157 (479)
.+++.+|+|.|+ |++|.++++.|++.| .+++++|...-...+.....-... .........+.+..+.. -.++.+
T Consensus 27 kL~~s~VlVvG~-GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~~~vG~~Kve~~~~rl~~INP~~~V~~i 105 (268)
T PRK15116 27 LFADAHICVVGI-GGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALRDNVGLAKAEVMAERIRQINPECRVTVV 105 (268)
T ss_pred HhcCCCEEEECc-CHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccChhhcChHHHHHHHHHHHhHCCCcEEEEE
Confidence 356779999987 999999999999999 588888764322111111000000 00011111222222211 234444
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccc
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMG 232 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~ 232 (479)
. +..+++.+.+++.. ++|+||.+.. ++..-..+.++|++.+. .||.+..++
T Consensus 106 ~-~~i~~e~~~~ll~~-~~D~VIdaiD--------------------~~~~k~~L~~~c~~~~i--p~I~~gGag 156 (268)
T PRK15116 106 D-DFITPDNVAEYMSA-GFSYVIDAID--------------------SVRPKAALIAYCRRNKI--PLVTTGGAG 156 (268)
T ss_pred e-cccChhhHHHHhcC-CCCEEEEcCC--------------------CHHHHHHHHHHHHHcCC--CEEEECCcc
Confidence 3 23345566666642 6899998764 23334468888988874 466554443
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0052 Score=58.48 Aligned_cols=128 Identities=17% Similarity=0.076 Sum_probs=74.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccccccccc--cc--CCCCCCccchhhhhhhhhcccCC-CceeE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDH--QL--GLDSLTPIASIHDRLRCWKSLTG-KNIEL 156 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 156 (479)
.++..+|+|.|+ |++|..++..|++.|. +++++|...=...+. +. ....+.. .......+.+.++.. -+++.
T Consensus 24 kL~~s~VlIvG~-GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~-~Kve~a~~~l~~iNP~v~V~~ 101 (287)
T PRK08223 24 RLRNSRVAIAGL-GGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGR-PKAEVLAEMVRDINPELEIRA 101 (287)
T ss_pred HHhcCCEEEECC-CHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCC-cHHHHHHHHHHHHCCCCEEEE
Confidence 356779999998 9999999999999995 677776542111111 10 0011111 111112223333322 25666
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccccc
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g 235 (479)
+...++ .+.+.++++ ++|+||.+.- ..++..-..+.++|.+.+ +.+|+.|..+..|
T Consensus 102 ~~~~l~-~~n~~~ll~--~~DlVvD~~D------------------~~~~~~r~~ln~~c~~~~--iP~V~~~~~g~~g 157 (287)
T PRK08223 102 FPEGIG-KENADAFLD--GVDVYVDGLD------------------FFEFDARRLVFAACQQRG--IPALTAAPLGMGT 157 (287)
T ss_pred EecccC-ccCHHHHHh--CCCEEEECCC------------------CCcHHHHHHHHHHHHHcC--CCEEEEeccCCeE
Confidence 666665 345677787 7899996541 012234456678899888 4688876644333
|
|
| >cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2 | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0051 Score=59.56 Aligned_cols=123 Identities=23% Similarity=0.239 Sum_probs=74.7
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC----CCCCCccchhhhhhhhhcccC-CCceeEEEccc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG----LDSLTPIASIHDRLRCWKSLT-GKNIELYIGDI 161 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl 161 (479)
+|||.|+ |++|.++++.|+..|. +++++|...-...+.... ...+.. .......+.+.++. .-.++.+..++
T Consensus 1 kVlIVGa-GGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk-~Kaevaa~~l~~lNp~v~V~~~~~~i 78 (312)
T cd01489 1 KVLVVGA-GGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGK-SKAQVAKEAVLSFNPNVKIVAYHANI 78 (312)
T ss_pred CEEEECC-CHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCc-HHHHHHHHHHHHHCCCCeEEEEeccC
Confidence 5899997 9999999999999996 677777543221111000 000100 11111122222322 23566677778
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
.+.....+.++ ++|+||.+.- |...-..+-+.|...+ ..||..++.+.+|.
T Consensus 79 ~~~~~~~~f~~--~~DvVv~a~D--------------------n~~ar~~in~~c~~~~--ip~I~~gt~G~~G~ 129 (312)
T cd01489 79 KDPDFNVEFFK--QFDLVFNALD--------------------NLAARRHVNKMCLAAD--VPLIESGTTGFLGQ 129 (312)
T ss_pred CCccchHHHHh--cCCEEEECCC--------------------CHHHHHHHHHHHHHCC--CCEEEEecCcceeE
Confidence 76543446667 7899997742 4555556778888887 46888888777665
|
UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK05442 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0042 Score=60.82 Aligned_cols=170 Identities=14% Similarity=0.181 Sum_probs=95.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC-------eEEEEeccccc--ccccccCCCCCCccchhhhhhhhhcccCCCceeE
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY-------EVAIVDSLIRR--LFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIEL 156 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~-------~V~~~dr~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 156 (479)
.++|.|+|++|.+|..++..|+..|. +++.+|..... ...... ++.+.. .... .++.+
T Consensus 4 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~~~~~~~g~a~---------Dl~~~~---~~~~-~~~~i 70 (326)
T PRK05442 4 PVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPPALKALEGVVM---------ELDDCA---FPLL-AGVVI 70 (326)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCCcccccceeeh---------hhhhhh---hhhc-CCcEE
Confidence 46899999999999999999988763 68888874321 111000 010100 0110 12222
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeecc---c
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTM---G 232 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~---~ 232 (479)
. . ...+.++ +.|+||-+||...-+.. +. ...+..|..-.+.+.+...++. .+..++.+|-- .
T Consensus 71 ~-~------~~y~~~~--daDiVVitaG~~~k~g~--tR---~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPvDv~ 136 (326)
T PRK05442 71 T-D------DPNVAFK--DADVALLVGARPRGPGM--ER---KDLLEANGAIFTAQGKALNEVAARDVKVLVVGNPANTN 136 (326)
T ss_pred e-c------ChHHHhC--CCCEEEEeCCCCCCCCC--cH---HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCchHHH
Confidence 1 1 1234455 89999999996432221 21 3457889999999999999855 45467766641 0
Q ss_pred --cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCC
Q 011707 233 --EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT 302 (479)
Q Consensus 233 --v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~ 302 (479)
+.-.... ...+....+.+-+..-++-...++..+++..-++...|+|...
T Consensus 137 t~v~~k~s~--------------------g~p~~rViG~t~LDs~R~r~~la~~l~v~~~~V~~~vV~GeHG 188 (326)
T PRK05442 137 ALIAMKNAP--------------------DLPAENFTAMTRLDHNRALSQLAAKAGVPVADIKKMTVWGNHS 188 (326)
T ss_pred HHHHHHHcC--------------------CCCHHHEEeeeHHHHHHHHHHHHHHhCcChHHeEEeEEEECCc
Confidence 1000000 0011122333444455555556666787777776656677643
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0045 Score=50.80 Aligned_cols=70 Identities=31% Similarity=0.411 Sum_probs=51.2
Q ss_pred EEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHHH
Q 011707 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLS 168 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~~ 168 (479)
|+|.|. |-+|..+++.|.+.+.+|+++++.... .+.+. ..++.++.||.++++.++
T Consensus 1 vvI~G~-g~~~~~i~~~L~~~~~~vvvid~d~~~--------------------~~~~~---~~~~~~i~gd~~~~~~l~ 56 (116)
T PF02254_consen 1 VVIIGY-GRIGREIAEQLKEGGIDVVVIDRDPER--------------------VEELR---EEGVEVIYGDATDPEVLE 56 (116)
T ss_dssp EEEES--SHHHHHHHHHHHHTTSEEEEEESSHHH--------------------HHHHH---HTTSEEEES-TTSHHHHH
T ss_pred eEEEcC-CHHHHHHHHHHHhCCCEEEEEECCcHH--------------------HHHHH---hcccccccccchhhhHHh
Confidence 678887 899999999999977799999876431 11111 245889999999999998
Q ss_pred HHhhhcCCCEEEEcc
Q 011707 169 ESFKSFEPDAVVHFG 183 (479)
Q Consensus 169 ~~~~~~~~D~Vih~A 183 (479)
++--. +.+.||-+.
T Consensus 57 ~a~i~-~a~~vv~~~ 70 (116)
T PF02254_consen 57 RAGIE-KADAVVILT 70 (116)
T ss_dssp HTTGG-CESEEEEES
T ss_pred hcCcc-ccCEEEEcc
Confidence 77433 688888654
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0068 Score=55.61 Aligned_cols=127 Identities=21% Similarity=0.202 Sum_probs=74.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC---CCCCCccchhhhhhhhhcccC-CCceeEE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG---LDSLTPIASIHDRLRCWKSLT-GKNIELY 157 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~v~~v 157 (479)
.++..+|+|.|+ |.+|..+++.|++.|. +++++|...-...+.... ...+ .........+.+..+. .-.++.+
T Consensus 25 ~L~~~~V~ViG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dv-G~~Ka~~a~~~l~~lnp~v~v~~~ 102 (212)
T PRK08644 25 KLKKAKVGIAGA-GGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQI-GMPKVEALKENLLEINPFVEIEAH 102 (212)
T ss_pred HHhCCCEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhC-CChHHHHHHHHHHHHCCCCEEEEE
Confidence 345779999997 9999999999999997 588887652111111000 0000 0011111222222221 1355556
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccccC
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEYGT 236 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~g~ 236 (479)
...+++ +.+.+.++ ++|+||.+.- |......+.+.|.+. + ..+|+.+..+-|+.
T Consensus 103 ~~~i~~-~~~~~~~~--~~DvVI~a~D--------------------~~~~r~~l~~~~~~~~~--~p~I~~~~~~~~~~ 157 (212)
T PRK08644 103 NEKIDE-DNIEELFK--DCDIVVEAFD--------------------NAETKAMLVETVLEHPG--KKLVAASGMAGYGD 157 (212)
T ss_pred eeecCH-HHHHHHHc--CCCEEEECCC--------------------CHHHHHHHHHHHHHhCC--CCEEEeehhhccCC
Confidence 556654 45667777 7999998742 344445677788877 6 36887765444443
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0015 Score=67.45 Aligned_cols=77 Identities=26% Similarity=0.303 Sum_probs=54.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+|+|+|+++ +|..+++.|++.|++|+++|+..... +.+..+++ ...++.++.+|..+
T Consensus 3 ~~~k~v~iiG~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~---------------~~~~~~~l---~~~~~~~~~~~~~~ 63 (450)
T PRK14106 3 LKGKKVLVVGAGV-SGLALAKFLKKLGAKVILTDEKEEDQ---------------LKEALEEL---GELGIELVLGEYPE 63 (450)
T ss_pred cCCCEEEEECCCH-HHHHHHHHHHHCCCEEEEEeCCchHH---------------HHHHHHHH---HhcCCEEEeCCcch
Confidence 4679999999866 99999999999999999998753211 11111222 12356778888765
Q ss_pred hHHHHHHhhhcCCCEEEEccccc
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQR 186 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~ 186 (479)
+... ++|+||+++|..
T Consensus 64 -----~~~~--~~d~vv~~~g~~ 79 (450)
T PRK14106 64 -----EFLE--GVDLVVVSPGVP 79 (450)
T ss_pred -----hHhh--cCCEEEECCCCC
Confidence 2334 689999999864
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0061 Score=55.26 Aligned_cols=124 Identities=19% Similarity=0.202 Sum_probs=71.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccc-----hhhhhhhhhcccCC-CceeE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIA-----SIHDRLRCWKSLTG-KNIEL 156 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~v~~ 156 (479)
++.++|+|.|+ |.+|.++++.|+..|. +++++|...-...+.. ..-+.... ......+.+.++.+ -.++.
T Consensus 19 L~~s~VlIiG~-gglG~evak~La~~GVg~i~lvD~d~ve~snL~--rqfl~~~~diG~~Ka~a~~~~L~~lNp~v~i~~ 95 (197)
T cd01492 19 LRSARILLIGL-KGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLG--AQFLIPAEDLGQNRAEASLERLRALNPRVKVSV 95 (197)
T ss_pred HHhCcEEEEcC-CHHHHHHHHHHHHcCCCEEEEEECCcccHhhCC--CCccccHHHcCchHHHHHHHHHHHHCCCCEEEE
Confidence 45779999987 5599999999999996 6888876432211110 00011000 01111222223222 24555
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
+...+.+ ...+.++ ++|+||.+.. |......+-++|++.+. .+|+.++.+.+|.
T Consensus 96 ~~~~~~~--~~~~~~~--~~dvVi~~~~--------------------~~~~~~~ln~~c~~~~i--p~i~~~~~G~~G~ 149 (197)
T cd01492 96 DTDDISE--KPEEFFS--QFDVVVATEL--------------------SRAELVKINELCRKLGV--KFYATGVHGLFGF 149 (197)
T ss_pred EecCccc--cHHHHHh--CCCEEEECCC--------------------CHHHHHHHHHHHHHcCC--CEEEEEecCCEEE
Confidence 5555542 2345566 7899997642 23333456688888884 6888888776653
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0073 Score=60.24 Aligned_cols=127 Identities=15% Similarity=0.104 Sum_probs=77.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC----CCCCCccchhhhhhhhhcccCC-CceeE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG----LDSLTPIASIHDRLRCWKSLTG-KNIEL 156 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 156 (479)
.++..+|+|+|+ |++|..++..|++.|. +++++|...=...+.... ...+. ........+.+.++.. -+++.
T Consensus 38 ~l~~~~VliiG~-GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG-~~Ka~~~~~~l~~~np~v~i~~ 115 (370)
T PRK05600 38 RLHNARVLVIGA-GGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGASDVG-RPKVEVAAERLKEIQPDIRVNA 115 (370)
T ss_pred HhcCCcEEEECC-CHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCChhHCC-CHHHHHHHHHHHHHCCCCeeEE
Confidence 456779999997 9999999999999995 788887643211111000 00010 1111122223333322 24556
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
+...++ .+.+.++++ ++|+||.|.. |...-..+-++|.+.+ +.+|+.+..+-+|.
T Consensus 116 ~~~~i~-~~~~~~~~~--~~DlVid~~D--------------------n~~~r~~in~~~~~~~--iP~v~~~~~g~~G~ 170 (370)
T PRK05600 116 LRERLT-AENAVELLN--GVDLVLDGSD--------------------SFATKFLVADAAEITG--TPLVWGTVLRFHGE 170 (370)
T ss_pred eeeecC-HHHHHHHHh--CCCEEEECCC--------------------CHHHHHHHHHHHHHcC--CCEEEEEEecCEEE
Confidence 666664 455677787 7999998853 4444456668888887 36888877555553
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0075 Score=60.86 Aligned_cols=127 Identities=20% Similarity=0.084 Sum_probs=76.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccccccccccc----CCCCCCccchhhhhhhhhcccCC-CceeE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQL----GLDSLTPIASIHDRLRCWKSLTG-KNIEL 156 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 156 (479)
.++..+|||+|+ |++|..++..|++.|. +++++|...-...+... ....+.. .......+.+.++.. -++..
T Consensus 39 ~L~~~~VlviG~-GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~-~Ka~~a~~~l~~~np~v~i~~ 116 (392)
T PRK07878 39 RLKNARVLVIGA-GGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGR-SKAQSARDSIVEINPLVNVRL 116 (392)
T ss_pred HHhcCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccChhcCCC-hHHHHHHHHHHHhCCCcEEEE
Confidence 345779999997 9999999999999996 67777653211111100 0011111 111112222223221 24555
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
+...++. +...++++ ++|+||.+.. |...-..+-++|.+.+ +.||+.+..+.+|.
T Consensus 117 ~~~~i~~-~~~~~~~~--~~D~Vvd~~d--------------------~~~~r~~ln~~~~~~~--~p~v~~~~~g~~G~ 171 (392)
T PRK07878 117 HEFRLDP-SNAVELFS--QYDLILDGTD--------------------NFATRYLVNDAAVLAG--KPYVWGSIYRFEGQ 171 (392)
T ss_pred EeccCCh-hHHHHHHh--cCCEEEECCC--------------------CHHHHHHHHHHHHHcC--CCEEEEEeccCEEE
Confidence 6666653 44667777 7999998752 3333445668888887 46999888777774
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.013 Score=53.25 Aligned_cols=95 Identities=22% Similarity=0.211 Sum_probs=57.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecc---cccccccccCCCCCCccchhhhhhhhhcccCC-CceeEE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSL---IRRLFDHQLGLDSLTPIASIHDRLRCWKSLTG-KNIELY 157 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~v 157 (479)
.++.++|+|.|+ |.+|+.++..|++.|. +|+++|.. .+...+.......+.. .......+.+..+.. -++..+
T Consensus 18 ~L~~~~V~IvG~-GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~-~Ka~~~~~~l~~inp~~~i~~~ 95 (200)
T TIGR02354 18 KLEQATVAICGL-GGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGE-PKTEALKENISEINPYTEIEAY 95 (200)
T ss_pred HHhCCcEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCC-HHHHHHHHHHHHHCCCCEEEEe
Confidence 345789999998 9999999999999998 69998876 2221111000011111 111111222222222 355666
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEc
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHF 182 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~ 182 (479)
..+++ .+.+.++++ ++|+||.+
T Consensus 96 ~~~i~-~~~~~~~~~--~~DlVi~a 117 (200)
T TIGR02354 96 DEKIT-EENIDKFFK--DADIVCEA 117 (200)
T ss_pred eeeCC-HhHHHHHhc--CCCEEEEC
Confidence 66665 456777787 79999987
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0022 Score=69.68 Aligned_cols=173 Identities=16% Similarity=0.147 Sum_probs=114.1
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.|.++|+||-|+.|-.|++-|..+|.+-.++..++. ...+ ......++|..- +-.|.+-..|++..+
T Consensus 1768 eksYii~GGLGGFGLELaqWLi~RGar~lVLtSRsG----irtG--------YQa~~vrrWr~~-GVqV~vsT~nitt~~ 1834 (2376)
T KOG1202|consen 1768 EKSYIIVGGLGGFGLELAQWLIQRGARKLVLTSRSG----IRTG--------YQALMVRRWRRR-GVQVQVSTSNITTAE 1834 (2376)
T ss_pred cceEEEeccccchhHHHHHHHHhcCceEEEEecccc----chhh--------HHHHHHHHHHhc-CeEEEEecccchhhh
Confidence 578999999999999999999999987665543221 0011 112345566432 123333446677666
Q ss_pred HHHHHhhhc----CCCEEEEcccccCc-ccccccccccchhhhhhHHHHHHHHHHHHHcCC-cceEEEeecccc-ccCCC
Q 011707 166 FLSESFKSF----EPDAVVHFGEQRSA-PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ-ECHLVKLGTMGE-YGTPN 238 (479)
Q Consensus 166 ~~~~~~~~~----~~D~Vih~A~~~~~-~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~-~~~~V~~SS~~v-~g~~~ 238 (479)
....+++.. -+-.|||+|+.... -....++..+..+-+.-+.||.|+-+..++... -..||.+||.+. -|+
T Consensus 1835 ga~~Li~~s~kl~~vGGiFnLA~VLRD~LiEnQt~knFk~va~pK~~~Ti~LD~~sRe~C~~LdyFv~FSSvscGRGN-- 1912 (2376)
T KOG1202|consen 1835 GARGLIEESNKLGPVGGIFNLAAVLRDGLIENQTPKNFKDVAKPKYSGTINLDRVSREICPELDYFVVFSSVSCGRGN-- 1912 (2376)
T ss_pred hHHHHHHHhhhcccccchhhHHHHHHhhhhcccChhHHHhhhccceeeeeehhhhhhhhCcccceEEEEEeecccCCC--
Confidence 666666532 36789999986432 223335555666677788899999888877642 237898898432 232
Q ss_pred CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCee
Q 011707 239 IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVV 297 (479)
Q Consensus 239 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v 297 (479)
..+++|+.+..++|+++.+- +..|+|-+.+.=|.|
T Consensus 1913 -----------------------~GQtNYG~aNS~MERiceqR-r~~GfPG~AiQWGAI 1947 (2376)
T KOG1202|consen 1913 -----------------------AGQTNYGLANSAMERICEQR-RHEGFPGTAIQWGAI 1947 (2376)
T ss_pred -----------------------CcccccchhhHHHHHHHHHh-hhcCCCcceeeeecc
Confidence 33789999999999999764 345888877765543
|
|
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0066 Score=55.33 Aligned_cols=128 Identities=16% Similarity=0.151 Sum_probs=74.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCC---ccchhhhhhhhhcccCCCceeEEE-
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLT---PIASIHDRLRCWKSLTGKNIELYI- 158 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~v~~v~- 158 (479)
++..+|+|.|. |++|+|.++.|++.|. +++++|...=...........+. ..+.+.-..++.... .+..++..
T Consensus 28 l~~~~V~VvGi-GGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~I-nP~c~V~~~ 105 (263)
T COG1179 28 LKQAHVCVVGI-GGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQI-NPECEVTAI 105 (263)
T ss_pred HhhCcEEEEec-CchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhh-CCCceEeeh
Confidence 45668999998 9999999999999996 66666542211111100111110 000011111122222 23444433
Q ss_pred cccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCC
Q 011707 159 GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN 238 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~ 238 (479)
-|.-.++.+++++.. ++|.||.+- -|+..-..|+..|.+++.+ ++||++.-+..+
T Consensus 106 ~~f~t~en~~~~~~~-~~DyvIDai--------------------D~v~~Kv~Li~~c~~~ki~----vIss~Gag~k~D 160 (263)
T COG1179 106 NDFITEENLEDLLSK-GFDYVIDAI--------------------DSVRAKVALIAYCRRNKIP----VISSMGAGGKLD 160 (263)
T ss_pred HhhhCHhHHHHHhcC-CCCEEEEch--------------------hhhHHHHHHHHHHHHcCCC----EEeeccccCCCC
Confidence 344567778888765 799999874 1666667899999998744 667776655443
|
|
| >cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0095 Score=55.36 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=73.1
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccc-----hhhhhhhhhcccC-CCceeEEEcc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIA-----SIHDRLRCWKSLT-GKNIELYIGD 160 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~v~~v~~D 160 (479)
+|||.|+ |++|..+++.|+..|. +++++|...-...+. +.+-+.... ...-..+.+.+.. .-+++.+..+
T Consensus 1 kVlvvG~-GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNL--nRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~ 77 (234)
T cd01484 1 KVLLVGA-GGIGCELLKNLALMGFGQIHVIDMDTIDVSNL--NRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNK 77 (234)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEEcchhh--ccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 4899986 9999999999999996 677777643211111 101011111 1111112222222 2356677777
Q ss_pred cCChHHH-HHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 161 ICDFEFL-SESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 161 l~d~~~~-~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
+.+...+ .+.++ ++|+||.+.. |+..-..+-+.|.+.+ +.+|..++.+-+|.
T Consensus 78 i~~~~~~~~~f~~--~~DvVi~a~D--------------------n~~aR~~ln~~c~~~~--iplI~~g~~G~~G~ 130 (234)
T cd01484 78 VGPEQDFNDTFFE--QFHIIVNALD--------------------NIIARRYVNGMLIFLI--VPLIESGTEGFKGN 130 (234)
T ss_pred CChhhhchHHHHh--CCCEEEECCC--------------------CHHHHHHHHHHHHHcC--CCEEEEcccCCceE
Confidence 7654433 34566 7999998742 5565566778888887 46888888766664
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou |
| >KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.036 Score=47.22 Aligned_cols=151 Identities=18% Similarity=0.111 Sum_probs=83.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh-
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF- 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~- 164 (479)
..+|+|-||-|-+|++.++.+..++|-|.-+|....... ..-..+.+|-.-.
T Consensus 3 agrVivYGGkGALGSacv~~FkannywV~siDl~eNe~A---------------------------d~sI~V~~~~swtE 55 (236)
T KOG4022|consen 3 AGRVIVYGGKGALGSACVEFFKANNYWVLSIDLSENEQA---------------------------DSSILVDGNKSWTE 55 (236)
T ss_pred CceEEEEcCcchHhHHHHHHHHhcCeEEEEEeecccccc---------------------------cceEEecCCcchhH
Confidence 358999999999999999999999999998886543211 1223334443211
Q ss_pred ------HHHHHHhhhcCCCEEEEcccccCccc-ccccc-cccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeecc-ccc
Q 011707 165 ------EFLSESFKSFEPDAVVHFGEQRSAPY-SMIDR-SRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTM-GEY 234 (479)
Q Consensus 165 ------~~~~~~~~~~~~D~Vih~A~~~~~~~-~~~~~-~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~-~v~ 234 (479)
+.+.+.+...++|.||..||--.... ...+- ...+.+++--+....--...+..+ ..+ -++.+... ...
T Consensus 56 Qe~~v~~~vg~sL~gekvDav~CVAGGWAGGnAksKdl~KNaDLMwKQSvwtSaIsa~lAt~HLK~G-GLL~LtGAkaAl 134 (236)
T KOG4022|consen 56 QEQSVLEQVGSSLQGEKVDAVFCVAGGWAGGNAKSKDLVKNADLMWKQSVWTSAISAKLATTHLKPG-GLLQLTGAKAAL 134 (236)
T ss_pred HHHHHHHHHHHhhcccccceEEEeeccccCCCcchhhhhhchhhHHHHHHHHHHHHHHHHHhccCCC-ceeeeccccccc
Confidence 22333444447999999987532111 11110 001122222222221222223222 222 34433332 111
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH-hCCc
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA-WGIR 288 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~gl~ 288 (479)
+ +....-.|+..|++..++.+.++.+ .|+|
T Consensus 135 ~------------------------gTPgMIGYGMAKaAVHqLt~SLaak~SGlP 165 (236)
T KOG4022|consen 135 G------------------------GTPGMIGYGMAKAAVHQLTSSLAAKDSGLP 165 (236)
T ss_pred C------------------------CCCcccchhHHHHHHHHHHHHhcccccCCC
Confidence 1 2234678999999999999998765 4665
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.012 Score=52.22 Aligned_cols=122 Identities=19% Similarity=0.129 Sum_probs=70.2
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccc---cCCCCCCccchhhhhhhhhcccC-CCceeEEEcccC
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQ---LGLDSLTPIASIHDRLRCWKSLT-GKNIELYIGDIC 162 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl~ 162 (479)
+|+|.|+ |.+|..+++.|++.|. +++++|...-...+.. .....+. ........+.+.++. .-+++.+...+.
T Consensus 1 ~VlViG~-GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg-~~Ka~~~~~~l~~lnp~v~i~~~~~~~~ 78 (174)
T cd01487 1 KVGIAGA-GGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIG-EPKVEALKENLREINPFVKIEAINIKID 78 (174)
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCC-ChHHHHHHHHHHHHCCCCEEEEEEeecC
Confidence 4899997 9999999999999997 5888887541111110 0000111 011111222233332 235555656654
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccccC
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEYGT 236 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~g~ 236 (479)
. +.+.+.++ ++|+||.+.. |...-..+.+.+.+. + ..||+.+..+-||.
T Consensus 79 ~-~~~~~~l~--~~DlVi~~~d--------------------~~~~r~~i~~~~~~~~~--ip~i~~~~~~~~~~ 128 (174)
T cd01487 79 E-NNLEGLFG--DCDIVVEAFD--------------------NAETKAMLAESLLGNKN--KPVVCASGMAGFGD 128 (174)
T ss_pred h-hhHHHHhc--CCCEEEECCC--------------------CHHHHHHHHHHHHHHCC--CCEEEEehhhccCC
Confidence 4 55777787 7999998842 333334567777666 5 36777665544444
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0094 Score=59.89 Aligned_cols=125 Identities=20% Similarity=0.152 Sum_probs=72.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC----CCCCCccchhhhhhhhhcccCC-CceeEE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG----LDSLTPIASIHDRLRCWKSLTG-KNIELY 157 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~v~~v 157 (479)
++.++|+|.|+ |++|.+++..|++.|. +++++|...-...+.... ...+. ........+.+.+... -.+..+
T Consensus 133 l~~~~VlvvG~-GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG-~~Ka~~~~~~l~~~np~v~v~~~ 210 (376)
T PRK08762 133 LLEARVLLIGA-GGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTEDRVG-QPKVDSAAQRLAALNPDVQVEAV 210 (376)
T ss_pred HhcCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccchhhCC-CcHHHHHHHHHHHHCCCCEEEEE
Confidence 46788999987 9999999999999997 788887642111111000 00000 0111111222322221 234445
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccccc
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g 235 (479)
...+. .+.+.++++ ++|+||++.. |...-..+.++|.+.+ +.+|+.+..+.+|
T Consensus 211 ~~~~~-~~~~~~~~~--~~D~Vv~~~d--------------------~~~~r~~ln~~~~~~~--ip~i~~~~~g~~g 263 (376)
T PRK08762 211 QERVT-SDNVEALLQ--DVDVVVDGAD--------------------NFPTRYLLNDACVKLG--KPLVYGAVFRFEG 263 (376)
T ss_pred eccCC-hHHHHHHHh--CCCEEEECCC--------------------CHHHHHHHHHHHHHcC--CCEEEEEeccCEE
Confidence 44444 345677777 7999998863 2223334668888888 4688887765554
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.012 Score=54.52 Aligned_cols=122 Identities=11% Similarity=0.089 Sum_probs=69.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCC---CCCCccchhhhhhhhhcccCC-CceeEEE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGL---DSLTPIASIHDRLRCWKSLTG-KNIELYI 158 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~v~~v~ 158 (479)
++..+|+|.|. |++|.++++.|++.|. +++++|...-...+..... .............+.+..+.. -+++.+.
T Consensus 9 L~~~~VlVvG~-GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~V~~~~ 87 (231)
T cd00755 9 LRNAHVAVVGL-GGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECEVDAVE 87 (231)
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcEEEEee
Confidence 45678999997 9999999999999996 7888875432111110000 000001111111222333321 2455555
Q ss_pred cccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 159 GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
..++ ++.+.+++.. ++|+||.+.. |+..-..+.++|++.+. .||...+
T Consensus 88 ~~i~-~~~~~~l~~~-~~D~VvdaiD--------------------~~~~k~~L~~~c~~~~i--p~I~s~g 135 (231)
T cd00755 88 EFLT-PDNSEDLLGG-DPDFVVDAID--------------------SIRAKVALIAYCRKRKI--PVISSMG 135 (231)
T ss_pred eecC-HhHHHHHhcC-CCCEEEEcCC--------------------CHHHHHHHHHHHHHhCC--CEEEEeC
Confidence 5554 3455566642 6999998753 34444568889998874 4655444
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.005 Score=63.62 Aligned_cols=72 Identities=22% Similarity=0.432 Sum_probs=56.1
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|+|+|+ |.+|.++++.|.++|++|+++++.... .+.+.+ ..++.++.+|.++.+.
T Consensus 1 m~viIiG~-G~ig~~~a~~L~~~g~~v~vid~~~~~--------------------~~~~~~--~~~~~~~~gd~~~~~~ 57 (453)
T PRK09496 1 MKIIIVGA-GQVGYTLAENLSGENNDVTVIDTDEER--------------------LRRLQD--RLDVRTVVGNGSSPDV 57 (453)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCcEEEEECCHHH--------------------HHHHHh--hcCEEEEEeCCCCHHH
Confidence 57999998 999999999999999999999875431 111111 1367889999999998
Q ss_pred HHHH-hhhcCCCEEEEcc
Q 011707 167 LSES-FKSFEPDAVVHFG 183 (479)
Q Consensus 167 ~~~~-~~~~~~D~Vih~A 183 (479)
++++ ++ ++|.||-+.
T Consensus 58 l~~~~~~--~a~~vi~~~ 73 (453)
T PRK09496 58 LREAGAE--DADLLIAVT 73 (453)
T ss_pred HHHcCCC--cCCEEEEec
Confidence 8887 66 789888764
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0025 Score=54.04 Aligned_cols=75 Identities=32% Similarity=0.367 Sum_probs=50.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCe-EEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYE-VAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~D 160 (479)
.+++++++|.|+ |..|+.++..|...|.+ |+++.|... +++.+.+. .+..+.++..
T Consensus 9 ~l~~~~vlviGa-Gg~ar~v~~~L~~~g~~~i~i~nRt~~--------------------ra~~l~~~~~~~~~~~~~~- 66 (135)
T PF01488_consen 9 DLKGKRVLVIGA-GGAARAVAAALAALGAKEITIVNRTPE--------------------RAEALAEEFGGVNIEAIPL- 66 (135)
T ss_dssp TGTTSEEEEESS-SHHHHHHHHHHHHTTSSEEEEEESSHH--------------------HHHHHHHHHTGCSEEEEEG-
T ss_pred CcCCCEEEEECC-HHHHHHHHHHHHHcCCCEEEEEECCHH--------------------HHHHHHHHcCccccceeeH-
Confidence 457899999998 99999999999999986 888887543 22222211 1223444433
Q ss_pred cCChHHHHHHhhhcCCCEEEEcccc
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFGEQ 185 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A~~ 185 (479)
+++.+.+. .+|+||++.+.
T Consensus 67 ----~~~~~~~~--~~DivI~aT~~ 85 (135)
T PF01488_consen 67 ----EDLEEALQ--EADIVINATPS 85 (135)
T ss_dssp ----GGHCHHHH--TESEEEE-SST
T ss_pred ----HHHHHHHh--hCCeEEEecCC
Confidence 33446666 78999999764
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0066 Score=67.67 Aligned_cols=77 Identities=21% Similarity=0.183 Sum_probs=56.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCC-Ce-------------EEEEecccccccccccCCCCCCccchhhhhhhhhccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKG-YE-------------VAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL 149 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G-~~-------------V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (479)
.++|+|+|.|| |++|+..++.|++.+ ++ |++.|+... .++.+...
T Consensus 567 ~~~~rIlVLGA-G~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~--------------------~a~~la~~ 625 (1042)
T PLN02819 567 KKSQNVLILGA-GRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLK--------------------DAKETVEG 625 (1042)
T ss_pred ccCCcEEEECC-CHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHH--------------------HHHHHHHh
Confidence 45789999998 999999999998863 33 666665432 11111111
Q ss_pred CCCceeEEEcccCChHHHHHHhhhcCCCEEEEccc
Q 011707 150 TGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGE 184 (479)
Q Consensus 150 ~~~~v~~v~~Dl~d~~~~~~~~~~~~~D~Vih~A~ 184 (479)
..++..+..|+.|.+++.++++ ++|+||++..
T Consensus 626 -~~~~~~v~lDv~D~e~L~~~v~--~~DaVIsalP 657 (1042)
T PLN02819 626 -IENAEAVQLDVSDSESLLKYVS--QVDVVISLLP 657 (1042)
T ss_pred -cCCCceEEeecCCHHHHHHhhc--CCCEEEECCC
Confidence 1367789999999999999988 7999999974
|
|
| >KOG1494 consensus NAD-dependent malate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.012 Score=54.64 Aligned_cols=118 Identities=15% Similarity=0.074 Sum_probs=77.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCe---EEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYE---VAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~---V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
..+-+|.|.||.|+||+-|...|- .... ....|..... ....++.+. +.......
T Consensus 26 ~~~~KVAvlGAaGGIGQPLSLLlK-~np~Vs~LaLYDi~~~~------------------GVaaDlSHI---~T~s~V~g 83 (345)
T KOG1494|consen 26 QRGLKVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIANTP------------------GVAADLSHI---NTNSSVVG 83 (345)
T ss_pred cCcceEEEEecCCccCccHHHHHh-cCcccceeeeeecccCC------------------ccccccccc---CCCCceec
Confidence 346789999999999999987665 4443 3344432211 111122111 22222233
Q ss_pred cCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
.+-.+.++.+++ +.|+||-=||...-+.-.+| ..|++|..-...+..++.++..+..+.++|-
T Consensus 84 ~~g~~~L~~al~--~advVvIPAGVPRKPGMTRD-----DLFn~NAgIv~~l~~aia~~cP~A~i~vIsN 146 (345)
T KOG1494|consen 84 FTGADGLENALK--GADVVVIPAGVPRKPGMTRD-----DLFNINAGIVKTLAAAIAKCCPNALILVISN 146 (345)
T ss_pred cCChhHHHHHhc--CCCEEEecCCCCCCCCCcHH-----HhhhcchHHHHHHHHHHHhhCccceeEeecC
Confidence 444678999999 89999999997654443333 4789999999999999999887756666653
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.027 Score=46.69 Aligned_cols=30 Identities=30% Similarity=0.554 Sum_probs=24.8
Q ss_pred EEEEEcCCchhhHHHHHHHHhC-CCeEEEEe
Q 011707 88 RVMIIGGDGYCGWATALHLSNK-GYEVAIVD 117 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~d 117 (479)
||.|+||||++|..|++.|+++ .+++..+.
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~ 31 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALV 31 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEE
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEee
Confidence 6899999999999999999996 34655443
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.012 Score=56.72 Aligned_cols=116 Identities=21% Similarity=0.207 Sum_probs=72.4
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|.|+|+ |+||+.++..|+.++ .+++++|.......+....+. ......... ..+.+| .+
T Consensus 1 ~KVaviGa-G~VG~s~a~~l~~~~~~~el~LiDi~~~~~~G~a~DL~-------------~~~~~~~~~-~~i~~~-~~- 63 (313)
T COG0039 1 MKVAVIGA-GNVGSSLAFLLLLQGLGSELVLIDINEEKAEGVALDLS-------------HAAAPLGSD-VKITGD-GD- 63 (313)
T ss_pred CeEEEECC-ChHHHHHHHHHhcccccceEEEEEcccccccchhcchh-------------hcchhccCc-eEEecC-CC-
Confidence 47999999 999999999998875 489999986332222111110 000001111 222232 12
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
.+.++ +.|+|+-+||...-+...+ ...++.|..-...+.....+.+.+..|+.+|
T Consensus 64 ---y~~~~--~aDiVvitAG~prKpGmtR-----~DLl~~Na~I~~~i~~~i~~~~~d~ivlVvt 118 (313)
T COG0039 64 ---YEDLK--GADIVVITAGVPRKPGMTR-----LDLLEKNAKIVKDIAKAIAKYAPDAIVLVVT 118 (313)
T ss_pred ---hhhhc--CCCEEEEeCCCCCCCCCCH-----HHHHHhhHHHHHHHHHHHHhhCCCeEEEEec
Confidence 23445 8999999999754333222 2367889999999999999988773455444
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0066 Score=57.81 Aligned_cols=115 Identities=17% Similarity=0.162 Sum_probs=72.7
Q ss_pred EEEEcCCchhhHHHHHHHHhCC----CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 89 VMIIGGDGYCGWATALHLSNKG----YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
|.|+||+|.+|..++..|+..| .+|+++|........ ....++...... ... .+.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~-------------~~~dl~~~~~~~-~~~-----~i~~~ 61 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKG-------------VAMDLQDAVEPL-ADI-----KVSIT 61 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchH-------------HHHHHHHhhhhc-cCc-----EEEEC
Confidence 5789999999999999999998 689999975432111 111111111111 011 11112
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+++.+.++ +.|+||.+++....+.... ......|+.-.+.+.+..++.+.+..++.+|
T Consensus 62 ~d~~~~~~--~aDiVv~t~~~~~~~g~~r-----~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t 119 (263)
T cd00650 62 DDPYEAFK--DADVVIITAGVGRKPGMGR-----LDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS 119 (263)
T ss_pred CchHHHhC--CCCEEEECCCCCCCcCCCH-----HHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 23556677 8999999998644322111 2245679999999999999888775666664
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.005 Score=60.29 Aligned_cols=119 Identities=21% Similarity=0.221 Sum_probs=73.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+.++|.|+|| |.+|..++..|+..| .+|+.+|.......... .+ ........+.... +.+
T Consensus 4 ~~~KI~IIGa-G~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~------------lD-l~~~~~~~~~~~~-i~~---- 64 (319)
T PTZ00117 4 KRKKISMIGA-GQIGSTVALLILQKNLGDVVLYDVIKGVPQGKA------------LD-LKHFSTLVGSNIN-ILG---- 64 (319)
T ss_pred CCcEEEEECC-CHHHHHHHHHHHHCCCCeEEEEECCCccchhHH------------HH-HhhhccccCCCeE-EEe----
Confidence 4679999997 999999999999988 68889987543211100 00 0001111111111 121
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
..+++ .++ +.|+||.++|....+.... ...+..|..-.+.+.+...+.+.+..++.+|-
T Consensus 65 ~~d~~-~l~--~ADiVVitag~~~~~g~~r-----~dll~~n~~i~~~i~~~i~~~~p~a~vivvsN 123 (319)
T PTZ00117 65 TNNYE-DIK--DSDVVVITAGVQRKEEMTR-----EDLLTINGKIMKSVAESVKKYCPNAFVICVTN 123 (319)
T ss_pred CCCHH-HhC--CCCEEEECCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 12244 556 8999999998643222111 33567888888888888888887756777654
|
|
| >PLN00112 malate dehydrogenase (NADP); Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.035 Score=56.37 Aligned_cols=171 Identities=12% Similarity=0.071 Sum_probs=98.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhC-------CC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeE
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNK-------GY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIEL 156 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~-------G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 156 (479)
.-+|.|+|++|.+|.+++-.|+.. |. +++.+|+........ ..+.......+. .++.+
T Consensus 100 ~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~------------amDL~daa~~~~-~~v~i 166 (444)
T PLN00112 100 LINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGV------------AMELEDSLYPLL-REVSI 166 (444)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHH------------HHHHHHhhhhhc-CceEE
Confidence 347999999999999999999987 54 688888765432221 111111110111 12222
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHH-cCCcceEEEeeccc---
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKE-FRQECHLVKLGTMG--- 232 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~-~g~~~~~V~~SS~~--- 232 (479)
..+| .+.++ +.|+||-+||...-+...+ ...++.|..-.+.+.....+ .+....+|.+|--.
T Consensus 167 ~~~~-------ye~~k--daDiVVitAG~prkpG~tR-----~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~ 232 (444)
T PLN00112 167 GIDP-------YEVFQ--DAEWALLIGAKPRGPGMER-----ADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTN 232 (444)
T ss_pred ecCC-------HHHhC--cCCEEEECCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHH
Confidence 2222 23455 8999999999743222111 34678899999999999999 57775777766410
Q ss_pred --cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCC
Q 011707 233 --EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTD 303 (479)
Q Consensus 233 --v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~ 303 (479)
+.-..... +. ....=..+.+..-++-...++..+++..-++-..|+|...+
T Consensus 233 t~v~~k~sg~-------------------~~-~rViGtgT~LDsaR~r~~LA~~l~V~~~~V~~~~V~GeHGd 285 (444)
T PLN00112 233 ALICLKNAPN-------------------IP-AKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHST 285 (444)
T ss_pred HHHHHHHcCC-------------------CC-cceEEeeccHHHHHHHHHHHHHhCcCHHHcccceEEecCCC
Confidence 11000000 00 11122223334445555566667888777776678887543
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.005 Score=60.72 Aligned_cols=34 Identities=18% Similarity=0.358 Sum_probs=28.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCe---EEEEecc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYE---VAIVDSL 119 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~---V~~~dr~ 119 (479)
+++|+|.||||++|..|++.|.++||. +..+.+.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~~~l~~l~s~ 37 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPVDKLRLLASA 37 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCcceEEEEEcc
Confidence 468999999999999999999998875 4666543
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.015 Score=58.64 Aligned_cols=127 Identities=21% Similarity=0.103 Sum_probs=75.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccccccccccc----CCCCCCccchhhhhhhhhcccCC-CceeE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQL----GLDSLTPIASIHDRLRCWKSLTG-KNIEL 156 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 156 (479)
.++..+|||.|+ |++|..+++.|++.|. +++++|...-...+... ....+. ........+.+.++.. -+++.
T Consensus 35 ~L~~~~VlivG~-GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG-~~Ka~~a~~~l~~~np~v~v~~ 112 (390)
T PRK07411 35 RLKAASVLCIGT-GGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVG-KPKIESAKNRILEINPYCQVDL 112 (390)
T ss_pred HHhcCcEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCC-CcHHHHHHHHHHHHCCCCeEEE
Confidence 345779999997 9999999999999996 67777653211111100 001111 0111112223333322 25666
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
+...++. +...+.+. ++|+||.+.. |...-..+-++|.+.+ +.+|+.+..+-+|.
T Consensus 113 ~~~~~~~-~~~~~~~~--~~D~Vvd~~d--------------------~~~~r~~ln~~~~~~~--~p~v~~~~~g~~g~ 167 (390)
T PRK07411 113 YETRLSS-ENALDILA--PYDVVVDGTD--------------------NFPTRYLVNDACVLLN--KPNVYGSIFRFEGQ 167 (390)
T ss_pred EecccCH-HhHHHHHh--CCCEEEECCC--------------------CHHHHHHHHHHHHHcC--CCEEEEEEccCEEE
Confidence 6666654 44567777 7899998863 3333345667888877 46888877666654
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0069 Score=59.16 Aligned_cols=34 Identities=35% Similarity=0.402 Sum_probs=30.8
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
++|.|+| .|.+|..++..|++.|++|+++|+...
T Consensus 3 ~~V~VIG-~G~mG~~iA~~la~~G~~V~v~d~~~~ 36 (308)
T PRK06129 3 GSVAIIG-AGLIGRAWAIVFARAGHEVRLWDADPA 36 (308)
T ss_pred cEEEEEC-ccHHHHHHHHHHHHCCCeeEEEeCCHH
Confidence 5799999 599999999999999999999998653
|
|
| >KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.024 Score=53.37 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEec
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDS 118 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr 118 (479)
.++.-|+|+|+ |++|+|++..|++.|. ++.++|-
T Consensus 72 l~~syVVVVG~-GgVGSwv~nmL~RSG~qKi~iVDf 106 (430)
T KOG2018|consen 72 LTNSYVVVVGA-GGVGSWVANMLLRSGVQKIRIVDF 106 (430)
T ss_pred hcCcEEEEEec-CchhHHHHHHHHHhcCceEEEech
Confidence 45667889987 9999999999999997 5666654
|
|
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.02 Score=61.75 Aligned_cols=121 Identities=15% Similarity=0.084 Sum_probs=74.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCc--cchhhhhhhhhcccC-CCceeEE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTP--IASIHDRLRCWKSLT-GKNIELY 157 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~v~~v 157 (479)
.++..+|+|.|+ | +|++++..|++.|- +++++|...=...+.+...-.... ........+.+..+. .-+++.+
T Consensus 104 ~L~~~~V~IvG~-G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~ 181 (722)
T PRK07877 104 RLGRLRIGVVGL-S-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVF 181 (722)
T ss_pred HHhcCCEEEEEe-c-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEE
Confidence 456789999999 8 99999999999993 788887532111111110000111 111111222233332 2367777
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
...++ .+.+.++++ ++|+||.|.- |+..-..+.++|.+.++ .+|+.++
T Consensus 182 ~~~i~-~~n~~~~l~--~~DlVvD~~D--------------------~~~~R~~ln~~a~~~~i--P~i~~~~ 229 (722)
T PRK07877 182 TDGLT-EDNVDAFLD--GLDVVVEECD--------------------SLDVKVLLREAARARRI--PVLMATS 229 (722)
T ss_pred eccCC-HHHHHHHhc--CCCEEEECCC--------------------CHHHHHHHHHHHHHcCC--CEEEEcC
Confidence 77776 677888888 7999998852 44444566688888874 5776664
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.019 Score=47.78 Aligned_cols=97 Identities=24% Similarity=0.177 Sum_probs=56.9
Q ss_pred cEEEEEcCCchhhHHHHHHHHh-CCCeEEE-EecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSN-KGYEVAI-VDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~-~G~~V~~-~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|.|.|++|-+|+.+++.+.+ .|+++.+ +++..+...+. ....+.... ...+.-.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~---------------d~g~~~~~~-------~~~~~v~ 58 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK---------------DVGELAGIG-------PLGVPVT 58 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS---------------BCHHHCTSS-------T-SSBEB
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc---------------hhhhhhCcC-------Ccccccc
Confidence 5899999999999999999999 5888665 45443221110 000000000 1111112
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
++++++++ .+|+||.+. +-.++...++.|.++|. .+|.-+|
T Consensus 59 ~~l~~~~~--~~DVvIDfT---------------------~p~~~~~~~~~~~~~g~--~~ViGTT 99 (124)
T PF01113_consen 59 DDLEELLE--EADVVIDFT---------------------NPDAVYDNLEYALKHGV--PLVIGTT 99 (124)
T ss_dssp S-HHHHTT--H-SEEEEES----------------------HHHHHHHHHHHHHHT---EEEEE-S
T ss_pred hhHHHhcc--cCCEEEEcC---------------------ChHHhHHHHHHHHhCCC--CEEEECC
Confidence 56788888 499999874 33555678888888874 4554343
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.015 Score=56.63 Aligned_cols=116 Identities=18% Similarity=0.192 Sum_probs=70.0
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEE-EcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELY-IGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v-~~Dl~d~ 164 (479)
++|.|+|+ |++|..++..|+..|. +|+++|....-.... ..+..+.. .......... ..|
T Consensus 2 ~KV~VIGa-G~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~------------a~d~~~~~-~~~~~~~~i~~t~d---- 63 (305)
T TIGR01763 2 KKISVIGA-GFVGATTAFRLAEKELADLVLLDVVEGIPQGK------------ALDMYEAS-PVGGFDTKVTGTNN---- 63 (305)
T ss_pred CEEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCCChhHHH------------HHhhhhhh-hccCCCcEEEecCC----
Confidence 57999997 9999999999999886 899999843211100 00000000 0000011111 122
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
+++ ++ +.|+||-++|...-+. .+. ...+..|+.-...+++...+.+.+..+|.+|-
T Consensus 64 --~~~-~~--~aDiVIitag~p~~~~--~sR---~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN 119 (305)
T TIGR01763 64 --YAD-TA--NSDIVVITAGLPRKPG--MSR---EDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN 119 (305)
T ss_pred --HHH-hC--CCCEEEEcCCCCCCcC--CCH---HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 333 45 7999999998643211 111 23567899999999998888876656776664
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.023 Score=55.35 Aligned_cols=114 Identities=19% Similarity=0.204 Sum_probs=73.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccC--CCceeEEE-cc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT--GKNIELYI-GD 160 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~-~D 160 (479)
.++|.|+|+ |.+|..++..|+..|. +++++|........ ...++.+.. .....+.. +|
T Consensus 3 ~~Ki~IiGa-G~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g----------------~a~Dl~~~~~~~~~~~v~~~~d 65 (312)
T cd05293 3 RNKVTVVGV-GQVGMACAISILAKGLADELVLVDVVEDKLKG----------------EAMDLQHGSAFLKNPKIEADKD 65 (312)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHH----------------HHHHHHHhhccCCCCEEEECCC
Confidence 358999996 9999999999998874 78889875432111 111111111 01112222 22
Q ss_pred cCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
++. ++ +.|+||-+||...-+.. +. ...+..|..-.+.+.+..++.+.+..++.+|-
T Consensus 66 ------y~~-~~--~adivvitaG~~~k~g~--~R---~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 121 (312)
T cd05293 66 ------YSV-TA--NSKVVIVTAGARQNEGE--SR---LDLVQRNVDIFKGIIPKLVKYSPNAILLVVSN 121 (312)
T ss_pred ------HHH-hC--CCCEEEECCCCCCCCCC--CH---HHHHHHHHHHHHHHHHHHHHhCCCcEEEEccC
Confidence 232 55 89999999996442211 11 34578899999999999999987767777663
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1 | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.027 Score=53.89 Aligned_cols=122 Identities=16% Similarity=0.100 Sum_probs=71.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccc-----hhhhhhhhhcccCC-CceeE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIA-----SIHDRLRCWKSLTG-KNIEL 156 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~v~~ 156 (479)
+...+|||.|+ |++|..+++.|+..|. +|+++|...-...+.... -+.... ......+.+.++.. -+++.
T Consensus 17 L~~s~VLIvG~-gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rq--f~~~~~dIGk~Kaea~~~~L~eLNp~V~V~~ 93 (286)
T cd01491 17 LQKSNVLISGL-GGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQ--FYLREEDIGKNRAEASQARLAELNPYVPVTV 93 (286)
T ss_pred HhcCcEEEEcC-CHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccC--ccCChHHhCHHHHHHHHHHHHHHCCCCEEEE
Confidence 45678999997 9999999999999996 688887643222111100 000000 11111222333322 23444
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
+..+++ .+.+. ++|+||.+.. |......+-++|++.+ ..||...+.+.+|.
T Consensus 94 ~~~~~~-----~~~l~--~fdvVV~~~~--------------------~~~~~~~in~~c~~~~--ipfI~a~~~G~~G~ 144 (286)
T cd01491 94 STGPLT-----TDELL--KFQVVVLTDA--------------------SLEDQLKINEFCHSPG--IKFISADTRGLFGS 144 (286)
T ss_pred EeccCC-----HHHHh--cCCEEEEecC--------------------CHHHHHHHHHHHHHcC--CEEEEEeccccEEE
Confidence 444421 24555 6899887642 3444456778898877 47999998888875
Q ss_pred C
Q 011707 237 P 237 (479)
Q Consensus 237 ~ 237 (479)
-
T Consensus 145 v 145 (286)
T cd01491 145 I 145 (286)
T ss_pred E
Confidence 3
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1. |
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.046 Score=53.15 Aligned_cols=114 Identities=18% Similarity=0.196 Sum_probs=72.9
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcc---cCC-CceeEEEccc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS---LTG-KNIELYIGDI 161 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~v~~v~~Dl 161 (479)
+|.|+|+ |.+|..++..|+..|. +++++|....-... ...++.+ +.. ..+....+|
T Consensus 1 Ki~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g----------------~a~DL~~~~~~~~~~~~~i~~~~- 62 (307)
T cd05290 1 KLVVIGA-GHVGSAVLNYALALGLFSEIVLIDVNEGVAEG----------------EALDFHHATALTYSTNTKIRAGD- 62 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCcchhhH----------------HHHHHHhhhccCCCCCEEEEECC-
Confidence 4789998 9999999999998874 79999875432111 1111211 111 234444343
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
.+.++ +.|+||-+||...-+....+. ...+..|..-.+.+.....+.+.+..++.+|-
T Consensus 63 ------y~~~~--~aDivvitaG~~~kpg~tr~R---~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsN 120 (307)
T cd05290 63 ------YDDCA--DADIIVITAGPSIDPGNTDDR---LDLAQTNAKIIREIMGNITKVTKEAVIILITN 120 (307)
T ss_pred ------HHHhC--CCCEEEECCCCCCCCCCCchH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEEecC
Confidence 23455 899999999974322211001 23578899999999999999997745555553
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.016 Score=57.41 Aligned_cols=33 Identities=33% Similarity=0.409 Sum_probs=28.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEec
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDS 118 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr 118 (479)
+++|+|+||||++|..+++.|++. +++++++.+
T Consensus 2 m~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~ 35 (343)
T PRK00436 2 MIKVGIVGASGYTGGELLRLLLNHPEVEIVAVTS 35 (343)
T ss_pred CeEEEEECCCCHHHHHHHHHHHcCCCceEEEEEC
Confidence 579999999999999999999987 678777654
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.019 Score=56.03 Aligned_cols=117 Identities=20% Similarity=0.189 Sum_probs=69.1
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
+++|.|+|| |.+|..++..|+..|. +|+++|+........ ..+..+.. ......... ... +|
T Consensus 2 ~~KI~VIGa-G~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~------------~~dl~~~~-~~~~~~~~i-~~~-~d- 64 (307)
T PRK06223 2 RKKISIIGA-GNVGATLAHLLALKELGDVVLFDIVEGVPQGK------------ALDIAEAA-PVEGFDTKI-TGT-ND- 64 (307)
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEEECCCchhHHH------------HHHHHhhh-hhcCCCcEE-EeC-CC-
Confidence 479999999 9999999999999875 999999854321110 00000000 000111111 110 12
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
++ .++ +.|+||.+++...-.. .+. ...+.-|+.-.+.+++...+...+..+|.+|
T Consensus 65 --~~-~~~--~aDiVii~~~~p~~~~--~~r---~~~~~~n~~i~~~i~~~i~~~~~~~~viv~t 119 (307)
T PRK06223 65 --YE-DIA--GSDVVVITAGVPRKPG--MSR---DDLLGINAKIMKDVAEGIKKYAPDAIVIVVT 119 (307)
T ss_pred --HH-HHC--CCCEEEECCCCCCCcC--CCH---HHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 32 355 8999999998533111 111 2345678888888888888777664566665
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.027 Score=58.14 Aligned_cols=77 Identities=32% Similarity=0.403 Sum_probs=57.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
...++|+|.|+ |.+|..+++.|.+.|++|+++++.... .+.+... ..++.++.+|.++
T Consensus 229 ~~~~~iiIiG~-G~~g~~l~~~L~~~~~~v~vid~~~~~--------------------~~~~~~~-~~~~~~i~gd~~~ 286 (453)
T PRK09496 229 KPVKRVMIVGG-GNIGYYLAKLLEKEGYSVKLIERDPER--------------------AEELAEE-LPNTLVLHGDGTD 286 (453)
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHH--------------------HHHHHHH-CCCCeEEECCCCC
Confidence 35788999998 999999999999999999999875431 1111111 1357789999999
Q ss_pred hHHHHHHhhhcCCCEEEEcc
Q 011707 164 FEFLSESFKSFEPDAVVHFG 183 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A 183 (479)
.+.++++--. +.|.||-+.
T Consensus 287 ~~~L~~~~~~-~a~~vi~~~ 305 (453)
T PRK09496 287 QELLEEEGID-EADAFIALT 305 (453)
T ss_pred HHHHHhcCCc-cCCEEEECC
Confidence 9988665432 688888554
|
|
| >PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.016 Score=59.30 Aligned_cols=79 Identities=16% Similarity=0.247 Sum_probs=55.2
Q ss_pred CCCCcEEEEEcC----------------CchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhh
Q 011707 83 PSKAKRVMIIGG----------------DGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146 (479)
Q Consensus 83 ~~~~~~vLVtGa----------------tG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (479)
.++||+||||+| ||-.|.+|++++..+|++|+.+.-...-.
T Consensus 253 ~l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~GA~VtlI~Gp~~~~----------------------- 309 (475)
T PRK13982 253 PLAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAAGAEVTLISGPVDLA----------------------- 309 (475)
T ss_pred ccCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHCCCcEEEEeCCcCCC-----------------------
Confidence 478999999974 79999999999999999999886321100
Q ss_pred cccCCCceeEEEcccCChHHHHHHhh-hcCCCEEEEcccccCcc
Q 011707 147 KSLTGKNIELYIGDICDFEFLSESFK-SFEPDAVVHFGEQRSAP 189 (479)
Q Consensus 147 ~~~~~~~v~~v~~Dl~d~~~~~~~~~-~~~~D~Vih~A~~~~~~ 189 (479)
...++.++.. ...+++.+++. ....|++|++|++....
T Consensus 310 ---~p~~v~~i~V--~ta~eM~~av~~~~~~Di~I~aAAVaDyr 348 (475)
T PRK13982 310 ---DPQGVKVIHV--ESARQMLAAVEAALPADIAIFAAAVADWR 348 (475)
T ss_pred ---CCCCceEEEe--cCHHHHHHHHHhhCCCCEEEEecccccee
Confidence 1134555543 34555555443 33579999999986543
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.028 Score=53.32 Aligned_cols=30 Identities=17% Similarity=0.253 Sum_probs=25.8
Q ss_pred cEEEEEcCCchhhHHHHHHHHhC-CCeEEEE
Q 011707 87 KRVMIIGGDGYCGWATALHLSNK-GYEVAIV 116 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~ 116 (479)
++|.|+|++|.+|+.+++.+.+. +.++.++
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav 32 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAA 32 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence 68999999999999999988875 6787764
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.014 Score=56.88 Aligned_cols=112 Identities=22% Similarity=0.259 Sum_probs=70.4
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccC--CCceeEEEcccC
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT--GKNIELYIGDIC 162 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~ 162 (479)
|+|.|.|+ |.+|..++..|+..| .+|.++|+....... ...++.... ........+
T Consensus 1 mkI~IIGa-G~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g----------------~a~dl~~~~~~~~~~~i~~~--- 60 (308)
T cd05292 1 MKVAIVGA-GFVGSTTAYALLLRGLASEIVLVDINKAKAEG----------------EAMDLAHGTPFVKPVRIYAG--- 60 (308)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCCCCEEEEEECCchhhhh----------------HHHHHHccccccCCeEEeeC---
Confidence 47999998 999999999999999 689999986432111 011111110 011222222
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ . +.++ +.|+||.+++....+.. +....+..|+.-...+.+..++.+.+..++.++
T Consensus 61 d---~-~~l~--~aDiViita~~~~~~~~-----~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t 116 (308)
T cd05292 61 D---Y-ADCK--GADVVVITAGANQKPGE-----TRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT 116 (308)
T ss_pred C---H-HHhC--CCCEEEEccCCCCCCCC-----CHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 2 2 2355 89999999986432111 123456779999999999988887664555554
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.015 Score=51.07 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=31.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.+.+++|||+|+.+.+|..+++.|.++|.+|++++|
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEEC
Confidence 467999999999667899999999999999888764
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.06 Score=52.76 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=72.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEE-cccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYI-GDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~-~Dl~ 162 (479)
+.++|.|+|| |.+|..++..|+..|. +|+++|......... ..+.... ....+....+.. +|
T Consensus 5 ~~~KI~IIGa-G~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~------------~ld~~~~-~~~~~~~~~I~~~~d-- 68 (321)
T PTZ00082 5 KRRKISLIGS-GNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGK------------ALDISHS-NVIAGSNSKVIGTNN-- 68 (321)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCCchhhHH------------HHHHHhh-hhccCCCeEEEECCC--
Confidence 4578999995 9999999999999995 888998765421110 0011110 111111222221 22
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
++ .++ +.|+||.+||...-+.......+-...+..|+.-.+.+.+...+.+.+..++.+|-
T Consensus 69 ----~~-~l~--~aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sN 129 (321)
T PTZ00082 69 ----YE-DIA--GSDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITN 129 (321)
T ss_pred ----HH-HhC--CCCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 32 455 89999999986432211000001133456788888888888888886656666663
|
|
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.021 Score=56.15 Aligned_cols=29 Identities=21% Similarity=0.397 Sum_probs=25.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEE
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVA 114 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~ 114 (479)
+++|.|+||||++|..|++.|.++++.+.
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~~ 32 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPVG 32 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCce
Confidence 47899999999999999999998776543
|
|
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.044 Score=54.21 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=72.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccC--CCceeEEEcccC
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT--GKNIELYIGDIC 162 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~ 162 (479)
++|.|+|+ |.+|..++..|+..|. +++++|....-.... ..++.+.. .... -+.++ .
T Consensus 38 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~----------------a~DL~~~~~~~~~~-~i~~~-~ 98 (350)
T PLN02602 38 TKVSVVGV-GNVGMAIAQTILTQDLADELALVDVNPDKLRGE----------------MLDLQHAAAFLPRT-KILAS-T 98 (350)
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHH----------------HHHHHhhhhcCCCC-EEEeC-C
Confidence 69999996 9999999999998874 788998754321111 11111111 0122 22221 1
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
| .+ .++ +.|+||-+||...-+.. +. ...+..|+.-.+.+.+..++.+.+..++.+|-
T Consensus 99 d---y~-~~~--daDiVVitAG~~~k~g~--tR---~dll~~N~~I~~~i~~~I~~~~p~~ivivvtN 155 (350)
T PLN02602 99 D---YA-VTA--GSDLCIVTAGARQIPGE--SR---LNLLQRNVALFRKIIPELAKYSPDTILLIVSN 155 (350)
T ss_pred C---HH-HhC--CCCEEEECCCCCCCcCC--CH---HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 2 22 255 89999999997432211 11 23567899999999999999887767777663
|
|
| >PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.052 Score=56.03 Aligned_cols=27 Identities=33% Similarity=0.518 Sum_probs=24.5
Q ss_pred EEcCCchhhHHHHHHHHhCCCeEEEEe
Q 011707 91 IIGGDGYCGWATALHLSNKGYEVAIVD 117 (479)
Q Consensus 91 VtGatG~iG~~l~~~Ll~~G~~V~~~d 117 (479)
|+||+|.+|..+++.|...|++|+...
T Consensus 43 l~~~~~g~~~~~~~~~~~~g~~v~~~~ 69 (450)
T PRK08261 43 LVGGAGRLAEALAALLAGLGYDVVANN 69 (450)
T ss_pred EEccCchhHHHHHHHHhhCCCeeeecC
Confidence 778889999999999999999999753
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.057 Score=49.23 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=50.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++++|||+|| |-+|..-++.|++.|++|++++..... .+..+.. ..++.++..+...
T Consensus 7 l~gk~vlVvGg-G~va~rk~~~Ll~~ga~VtVvsp~~~~-------------------~l~~l~~--~~~i~~~~~~~~~ 64 (205)
T TIGR01470 7 LEGRAVLVVGG-GDVALRKARLLLKAGAQLRVIAEELES-------------------ELTLLAE--QGGITWLARCFDA 64 (205)
T ss_pred cCCCeEEEECc-CHHHHHHHHHHHHCCCEEEEEcCCCCH-------------------HHHHHHH--cCCEEEEeCCCCH
Confidence 57899999998 999999999999999999998753221 1112211 1378888888753
Q ss_pred hHHHHHHhhhcCCCEEEEcc
Q 011707 164 FEFLSESFKSFEPDAVVHFG 183 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A 183 (479)
. .+. +.+.||-+-
T Consensus 65 ~-----dl~--~~~lVi~at 77 (205)
T TIGR01470 65 D-----ILE--GAFLVIAAT 77 (205)
T ss_pred H-----HhC--CcEEEEECC
Confidence 2 244 678887543
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >cd05295 MDH_like Malate dehydrogenase-like | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.038 Score=56.14 Aligned_cols=169 Identities=12% Similarity=0.109 Sum_probs=95.1
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhC---CC--e--EEEEecc--cccccccccCCCCCCccchhhhhhhhhcccCCCceeE
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNK---GY--E--VAIVDSL--IRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIEL 156 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~---G~--~--V~~~dr~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 156 (479)
.-+|+||||+|.||.+|+-.|++= |. . ++.+|.. .....+ ...+.......+. .++.+
T Consensus 123 p~~V~vtgAag~i~Y~l~~~ia~G~~fG~~~~v~L~LlDi~~~~~~l~G------------~amDL~D~a~pll-~~v~i 189 (452)
T cd05295 123 PLQVCITNASAPLCYHLIPSLASGEVFGMEEEISIHLLDSPENLEKLKG------------LVMEVEDLAFPLL-RGISV 189 (452)
T ss_pred ceEEEEecCcHHHHHHHHHHHhCCcccCCCCeEEEEEEcCCCchhhHHH------------HHHHHHHhHHhhc-CCcEE
Confidence 358999999999999999999873 42 2 4455552 111100 0111111111111 12333
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCC--cceEEEeecc---
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ--ECHLVKLGTM--- 231 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~--~~~~V~~SS~--- 231 (479)
. .| ..+.++ +.|+||-+||...-+...+ ...++.|..-.+.+..+..+.+. . +++.+.|-
T Consensus 190 ~-~~------~~ea~~--daDvvIitag~prk~G~~R-----~DLL~~N~~Ifk~~g~~I~~~a~~~~-~VlVv~tNPvD 254 (452)
T cd05295 190 T-TD------LDVAFK--DAHVIVLLDDFLIKEGEDL-----EGCIRSRVAICQLYGPLIEKNAKEDV-KVIVAGRTFLN 254 (452)
T ss_pred E-EC------CHHHhC--CCCEEEECCCCCCCcCCCH-----HHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEEeCCcHH
Confidence 2 21 245666 8999999999743222211 34678899999999999988876 5 55555541
Q ss_pred ---ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCC
Q 011707 232 ---GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT 302 (479)
Q Consensus 232 ---~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~ 302 (479)
.+.-.... ...+....+.+....-++....++..|++..-|+-..|.|...
T Consensus 255 ~~t~i~~k~ap--------------------giP~~rVig~gtlds~R~r~~LA~kl~V~~~~V~~~~VwGeHG 308 (452)
T cd05295 255 LKTSILIKYAP--------------------SIPRKNIIAVARLQENRAKALLARKLNVNSAGIKDVIVWGNIG 308 (452)
T ss_pred HHHHHHHHHcC--------------------CCCHHHEEEecchHHHHHHHHHHHHhCcCHHHceeeEEEEccC
Confidence 01100000 0111233344445555556666777788888787777878644
|
These MDH-like proteins are related to other groups in the MDH family but do not have conserved substrate and cofactor binding residues. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subgroup are uncharacterized MDH-like proteins from animals. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0099 Score=57.73 Aligned_cols=112 Identities=21% Similarity=0.218 Sum_probs=70.8
Q ss_pred EEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCC--CceeEEEcccCCh
Q 011707 89 VMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTG--KNIELYIGDICDF 164 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~v~~Dl~d~ 164 (479)
|.|.|+ |++|..++..|+..| .+++++|......... ..++.+... .......+ .|
T Consensus 1 i~iiGa-G~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~----------------~~DL~~~~~~~~~~~i~~~--~~- 60 (300)
T cd00300 1 ITIIGA-GNVGAAVAFALIAKGLASELVLVDVNEEKAKGD----------------ALDLSHASAFLATGTIVRG--GD- 60 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHH----------------HHhHHHhccccCCCeEEEC--CC-
Confidence 468887 899999999999988 6899999854322111 111111111 12222221 12
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
. +.++ +.|+||.+||...-+.. +. ...+..|+.-.+.+.+..++.+.+..++.+|-
T Consensus 61 --~-~~l~--~aDiVIitag~p~~~~~--~R---~~l~~~n~~i~~~~~~~i~~~~p~~~viv~sN 116 (300)
T cd00300 61 --Y-ADAA--DADIVVITAGAPRKPGE--TR---LDLINRNAPILRSVITNLKKYGPDAIILVVSN 116 (300)
T ss_pred --H-HHhC--CCCEEEEcCCCCCCCCC--CH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 2 3555 89999999996432211 11 23567799999999999999887756666663
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.019 Score=59.30 Aligned_cols=36 Identities=28% Similarity=0.403 Sum_probs=31.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
+++|+|+|||++| +|...++.|++.|++|++.|+..
T Consensus 3 ~~~k~v~v~G~g~-~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 3 YQNKKVLVLGLAK-SGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred cCCCEEEEEeeCH-HHHHHHHHHHHCCCEEEEEcCCC
Confidence 4688999999977 99999999999999999988643
|
|
| >PRK14852 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.054 Score=59.71 Aligned_cols=128 Identities=16% Similarity=0.111 Sum_probs=73.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccc--cccccccC--CCCCCccchhhhhhhhhcccCC-CceeE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIR--RLFDHQLG--LDSLTPIASIHDRLRCWKSLTG-KNIEL 156 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~v~~ 156 (479)
.++..+|+|.|+ |++|..+++.|++.|. +++++|...= .....+.. ...+. .....-..+.+.++.. -.++.
T Consensus 329 kL~~srVlVvGl-GGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG-~~Kaevaa~~l~~INP~v~I~~ 406 (989)
T PRK14852 329 RLLRSRVAIAGL-GGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFG-RGKLDVMTERALSVNPFLDIRS 406 (989)
T ss_pred HHhcCcEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCC-ChHHHHHHHHHHHHCCCCeEEE
Confidence 355779999996 9999999999999996 6777654321 11111100 00010 0111112222333322 25666
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccccc
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g 235 (479)
+...+ +.+.+.+.++ ++|+||.+.-. ..+..-..+.+.|.+.+ +.+|+.++.+-+|
T Consensus 407 ~~~~I-~~en~~~fl~--~~DiVVDa~D~------------------~~~~~rr~l~~~c~~~~--IP~I~ag~~G~~g 462 (989)
T PRK14852 407 FPEGV-AAETIDAFLK--DVDLLVDGIDF------------------FALDIRRRLFNRALELG--IPVITAGPLGYSC 462 (989)
T ss_pred EecCC-CHHHHHHHhh--CCCEEEECCCC------------------ccHHHHHHHHHHHHHcC--CCEEEeeccccCe
Confidence 66666 4566788888 89999976421 11223346677788877 3588877755444
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.06 Score=57.92 Aligned_cols=124 Identities=15% Similarity=0.063 Sum_probs=71.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccc--cccccccC--CCCCCccchhhhhhhhhcccC-CCceeE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIR--RLFDHQLG--LDSLTPIASIHDRLRCWKSLT-GKNIEL 156 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~v~~ 156 (479)
.+++.+|+|.|+ |++|++++..|++.|. +++++|...= .+...+.. ...+.. ....-..+.+.++. .-+++.
T Consensus 40 kL~~~~VlIvG~-GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~-~Kv~v~~~~l~~inP~~~I~~ 117 (679)
T PRK14851 40 RLAEAKVAIPGM-GGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGR-PKLAVMKEQALSINPFLEITP 117 (679)
T ss_pred HHhcCeEEEECc-CHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCC-HHHHHHHHHHHHhCCCCeEEE
Confidence 356789999996 9999999999999996 6667654321 11111100 001100 11111122222222 236777
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecc
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTM 231 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~ 231 (479)
+...++ .+.+.+.++ ++|+||.+.-. ..+..-..+.+.|.+.++ .+|+.+..
T Consensus 118 ~~~~i~-~~n~~~~l~--~~DvVid~~D~------------------~~~~~r~~l~~~c~~~~i--P~i~~g~~ 169 (679)
T PRK14851 118 FPAGIN-ADNMDAFLD--GVDVVLDGLDF------------------FQFEIRRTLFNMAREKGI--PVITAGPL 169 (679)
T ss_pred EecCCC-hHHHHHHHh--CCCEEEECCCC------------------CcHHHHHHHHHHHHHCCC--CEEEeecc
Confidence 777775 456778888 89999976420 012233456778888773 57766543
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.017 Score=55.24 Aligned_cols=36 Identities=25% Similarity=0.319 Sum_probs=32.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
..+||+|+|.|++|.+|+.++..|+++|..|+++++
T Consensus 156 ~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~ 191 (283)
T PRK14192 156 ELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHS 191 (283)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeC
Confidence 568999999999999999999999999999988764
|
|
| >PRK06153 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.064 Score=53.05 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=69.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc--ccccccccCC---CCCCc-cchhhhhhhhhcccCCCcee
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI--RRLFDHQLGL---DSLTP-IASIHDRLRCWKSLTGKNIE 155 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~--~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~v~ 155 (479)
.+++.+|+|.|+ |++|++++..|++.|. +++++|.-. ......+.+. ..+.. ...+.-..+.+... ..++.
T Consensus 173 kL~~~~VaIVG~-GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~i-n~~I~ 250 (393)
T PRK06153 173 KLEGQRIAIIGL-GGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNM-RRGIV 250 (393)
T ss_pred HHhhCcEEEEcC-CccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHh-CCeEE
Confidence 456789999997 9999999999999985 788776532 1111111100 00000 00111111122222 23566
Q ss_pred EEEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 156 LYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 156 ~v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
.+...+ +++.+. .+. ++|+||.|.- |..+-..+.++|.+.++ .+|.++-
T Consensus 251 ~~~~~I-~~~n~~-~L~--~~DiV~dcvD--------------------n~~aR~~ln~~a~~~gI--P~Id~G~ 299 (393)
T PRK06153 251 PHPEYI-DEDNVD-ELD--GFTFVFVCVD--------------------KGSSRKLIVDYLEALGI--PFIDVGM 299 (393)
T ss_pred EEeecC-CHHHHH-Hhc--CCCEEEEcCC--------------------CHHHHHHHHHHHHHcCC--CEEEeee
Confidence 666666 555554 455 7999998863 44454566788888774 4776664
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.03 Score=55.26 Aligned_cols=28 Identities=21% Similarity=0.393 Sum_probs=24.7
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEE
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAI 115 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~ 115 (479)
+|+|.||||++|..|++.|.++||.+.-
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp~~~ 28 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFPIDK 28 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCChhh
Confidence 4899999999999999999998887543
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.027 Score=55.86 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=26.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhC-CCeEEEE
Q 011707 87 KRVMIIGGDGYCGWATALHLSNK-GYEVAIV 116 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~ 116 (479)
++|.|+||||++|..+++.|.++ +.+++.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l 31 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYL 31 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEE
Confidence 47999999999999999999987 6787744
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.043 Score=54.76 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=69.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC-e----EE--EE--ecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEE
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY-E----VA--IV--DSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELY 157 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~-~----V~--~~--dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v 157 (479)
-+|.|+||+|.+|.+++-.|+..|. . |. .+ |+...-.... ..+-......+. .++.+.
T Consensus 45 ~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~~~~a~g~------------a~DL~d~a~~~~-~~v~i~ 111 (387)
T TIGR01757 45 VNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERSKEALEGV------------AMELEDSLYPLL-REVSIG 111 (387)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCccchhhhHH------------HHHHHHhhhhhc-CceEEe
Confidence 5899999999999999999998863 2 33 33 4433211110 011111110111 122222
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeec
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGT 230 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS 230 (479)
.+| .+.++ +.|+||-+||...-+...+ ...+..|+.-.+.+.....++. ...++|.+|-
T Consensus 112 ~~~-------y~~~k--daDIVVitAG~prkpg~tR-----~dll~~N~~I~k~i~~~I~~~a~~~~iviVVsN 171 (387)
T TIGR01757 112 IDP-------YEVFE--DADWALLIGAKPRGPGMER-----ADLLDINGQIFADQGKALNAVASKNCKVLVVGN 171 (387)
T ss_pred cCC-------HHHhC--CCCEEEECCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 222 23455 8999999999753222121 3467889999999999999854 5556666664
|
This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.017 Score=50.06 Aligned_cols=36 Identities=33% Similarity=0.530 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~ 120 (479)
.++++|+|+|+ |.+|..+++.|.+.| ++|+++++..
T Consensus 17 ~~~~~i~iiG~-G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 17 LKGKKVLILGA-GGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 45789999998 999999999999996 7899988754
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2 | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.077 Score=53.71 Aligned_cols=123 Identities=19% Similarity=0.183 Sum_probs=71.5
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC------eEEEEecccccccccccCCCCCCccc-----hhhhhhhhhcccC-CCcee
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY------EVAIVDSLIRRLFDHQLGLDSLTPIA-----SIHDRLRCWKSLT-GKNIE 155 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~------~V~~~dr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~v~ 155 (479)
+|||+|+ |+||..+++.|+..|. +++++|...-...+. +.+-+.... ...-..+.+.++. .-+++
T Consensus 1 kVlvVGa-GGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNL--nRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~ 77 (435)
T cd01490 1 KVFLVGA-GAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNL--NRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKIT 77 (435)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCcCCCCeEEEECCCCcccccc--CcCccCChhHcCcHHHHHHHHHHHHHCCCCEEE
Confidence 5899996 9999999999999997 788887543211111 100011100 1111112222221 12455
Q ss_pred EEEcccCCh-H-HH-HHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccc
Q 011707 156 LYIGDICDF-E-FL-SESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMG 232 (479)
Q Consensus 156 ~v~~Dl~d~-~-~~-~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~ 232 (479)
.+...+... + .+ .+.++ ++|+||++.- |+..-..+-+.|...+ +.+|..++.+
T Consensus 78 a~~~~v~~~~~~~~~~~f~~--~~DvVi~alD--------------------n~~aR~~vn~~C~~~~--iPli~~gt~G 133 (435)
T cd01490 78 ALQNRVGPETEHIFNDEFWE--KLDGVANALD--------------------NVDARMYVDRRCVYYR--KPLLESGTLG 133 (435)
T ss_pred EEecccChhhhhhhhHHHhc--CCCEEEECCC--------------------CHHHHHHHHHHHHHhC--CCEEEEeccc
Confidence 555555321 1 11 23445 7899997641 6666667888999887 4688888877
Q ss_pred cccCC
Q 011707 233 EYGTP 237 (479)
Q Consensus 233 v~g~~ 237 (479)
.+|..
T Consensus 134 ~~G~v 138 (435)
T cd01490 134 TKGNT 138 (435)
T ss_pred ceeEE
Confidence 77753
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1. |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.015 Score=51.89 Aligned_cols=38 Identities=34% Similarity=0.289 Sum_probs=33.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
.+.+++|.|.|. |-||+.+++.|..-|.+|+++++...
T Consensus 33 ~l~g~tvgIiG~-G~IG~~vA~~l~~fG~~V~~~d~~~~ 70 (178)
T PF02826_consen 33 ELRGKTVGIIGY-GRIGRAVARRLKAFGMRVIGYDRSPK 70 (178)
T ss_dssp -STTSEEEEEST-SHHHHHHHHHHHHTT-EEEEEESSCH
T ss_pred ccCCCEEEEEEE-cCCcCeEeeeeecCCceeEEecccCC
Confidence 457999999986 99999999999999999999998755
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.015 Score=56.05 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=33.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+++++|+|. |.+|+.+++.|...|.+|++++|..
T Consensus 148 ~l~gk~v~IiG~-G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 148 TIHGSNVMVLGF-GRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CCCCCEEEEEcC-hHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 457899999998 8899999999999999999998754
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.037 Score=49.55 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=27.8
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRR 122 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~ 122 (479)
|+|.|.| .||+|.-++..|++.|++|+++|.....
T Consensus 1 M~I~ViG-lGyvGl~~A~~lA~~G~~V~g~D~~~~~ 35 (185)
T PF03721_consen 1 MKIAVIG-LGYVGLPLAAALAEKGHQVIGVDIDEEK 35 (185)
T ss_dssp -EEEEE---STTHHHHHHHHHHTTSEEEEE-S-HHH
T ss_pred CEEEEEC-CCcchHHHHHHHHhCCCEEEEEeCChHH
Confidence 6899996 5999999999999999999999987653
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.083 Score=42.33 Aligned_cols=35 Identities=31% Similarity=0.473 Sum_probs=30.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
+++++|||+|| |-+|..=++.|++.|.+|+++...
T Consensus 5 l~~~~vlVvGg-G~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 5 LKGKRVLVVGG-GPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp -TT-EEEEEEE-SHHHHHHHHHHCCCTBEEEEEESS
T ss_pred cCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCc
Confidence 57899999998 999999999999999999998764
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.069 Score=52.75 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=31.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
..+.+|||+||+|.+|..+++.+...|.+|+++++.
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~ 185 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS 185 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 357899999999999999999888889999887654
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.47 Score=48.87 Aligned_cols=88 Identities=20% Similarity=0.166 Sum_probs=58.3
Q ss_pred CCCcEEEEEcCC---chhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEE
Q 011707 84 SKAKRVMIIGGD---GYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYI 158 (479)
Q Consensus 84 ~~~~~vLVtGat---G~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 158 (479)
+..++|.|+|++ |-+|..+++.|.+.|| +|+.+..... .+
T Consensus 5 ~~p~siavvGaS~~~~~~g~~~~~~l~~~gf~g~v~~Vnp~~~-------------------------------~i---- 49 (447)
T TIGR02717 5 FNPKSVAVIGASRDPGKVGYAIMKNLIEGGYKGKIYPVNPKAG-------------------------------EI---- 49 (447)
T ss_pred cCCCEEEEEccCCCCCchHHHHHHHHHhCCCCCcEEEECCCCC-------------------------------cc----
Confidence 457899999998 6789999999999998 6876643211 00
Q ss_pred cccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 159 GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
..+.-..+++++-. .+|.++-+. .-..+..+++.|.+.|++ .+|.+|+
T Consensus 50 ~G~~~~~sl~~lp~--~~Dlavi~v---------------------p~~~~~~~l~e~~~~gv~-~~vi~s~ 97 (447)
T TIGR02717 50 LGVKAYPSVLEIPD--PVDLAVIVV---------------------PAKYVPQVVEECGEKGVK-GAVVITA 97 (447)
T ss_pred CCccccCCHHHCCC--CCCEEEEec---------------------CHHHHHHHHHHHHhcCCC-EEEEECC
Confidence 11222333555544 688877553 233445688888888988 7777776
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.036 Score=54.74 Aligned_cols=28 Identities=21% Similarity=0.353 Sum_probs=24.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCe
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYE 112 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~ 112 (479)
..++|.|.||||++|..|++.|.+++|.
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP 33 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFP 33 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCC
Confidence 3568999999999999999999998874
|
|
| >KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.031 Score=55.30 Aligned_cols=77 Identities=23% Similarity=0.188 Sum_probs=49.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++.|||.||+|.+|.+.++.+...| ..|+.....+. .+..+. + + .-...|..
T Consensus 156 ~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~t~~s~e~------------------~~l~k~---l---G-Ad~vvdy~ 210 (347)
T KOG1198|consen 156 SKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVVTACSKEK------------------LELVKK---L---G-ADEVVDYK 210 (347)
T ss_pred CCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEEEEcccch------------------HHHHHH---c---C-CcEeecCC
Confidence 468899999999999999999888889 45544332211 011111 1 1 11235777
Q ss_pred ChHHHHHHhh--hcCCCEEEEcccc
Q 011707 163 DFEFLSESFK--SFEPDAVVHFGEQ 185 (479)
Q Consensus 163 d~~~~~~~~~--~~~~D~Vih~A~~ 185 (479)
+++..++..+ ..++|+|++|.|.
T Consensus 211 ~~~~~e~~kk~~~~~~DvVlD~vg~ 235 (347)
T KOG1198|consen 211 DENVVELIKKYTGKGVDVVLDCVGG 235 (347)
T ss_pred CHHHHHHHHhhcCCCccEEEECCCC
Confidence 7655555444 2369999999985
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.047 Score=58.39 Aligned_cols=97 Identities=16% Similarity=0.267 Sum_probs=67.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
..+|+|.|. |-+|+.+++.|.++|++++++|..+. +.+...+ .+..++.||.++++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~--------------------~v~~~~~---~g~~v~~GDat~~~ 455 (601)
T PRK03659 400 KPQVIIVGF-GRFGQVIGRLLMANKMRITVLERDIS--------------------AVNLMRK---YGYKVYYGDATQLE 455 (601)
T ss_pred cCCEEEecC-chHHHHHHHHHHhCCCCEEEEECCHH--------------------HHHHHHh---CCCeEEEeeCCCHH
Confidence 357899986 99999999999999999999997543 2222222 36788999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEE
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVK 227 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~ 227 (479)
.++++=-+ +.|.||-+-. |-.....+++.+++..+..+++-
T Consensus 456 ~L~~agi~-~A~~vv~~~~--------------------d~~~n~~i~~~~r~~~p~~~Iia 496 (601)
T PRK03659 456 LLRAAGAE-KAEAIVITCN--------------------EPEDTMKIVELCQQHFPHLHILA 496 (601)
T ss_pred HHHhcCCc-cCCEEEEEeC--------------------CHHHHHHHHHHHHHHCCCCeEEE
Confidence 88876322 6788885532 11223356677777765534443
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.046 Score=58.08 Aligned_cols=71 Identities=13% Similarity=0.223 Sum_probs=54.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
.+|+|.|+ |-+|+++++.|.++|++|+++|.++. +.+.+. ..+...+.||.+|++.
T Consensus 418 ~hiiI~G~-G~~G~~la~~L~~~g~~vvvId~d~~--------------------~~~~~~---~~g~~~i~GD~~~~~~ 473 (558)
T PRK10669 418 NHALLVGY-GRVGSLLGEKLLAAGIPLVVIETSRT--------------------RVDELR---ERGIRAVLGNAANEEI 473 (558)
T ss_pred CCEEEECC-ChHHHHHHHHHHHCCCCEEEEECCHH--------------------HHHHHH---HCCCeEEEcCCCCHHH
Confidence 46899987 99999999999999999999997543 222222 2468899999999998
Q ss_pred HHHHhhhcCCCEEEEc
Q 011707 167 LSESFKSFEPDAVVHF 182 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~ 182 (479)
++++--+ +.|.|+-+
T Consensus 474 L~~a~i~-~a~~viv~ 488 (558)
T PRK10669 474 MQLAHLD-CARWLLLT 488 (558)
T ss_pred HHhcCcc-ccCEEEEE
Confidence 8766432 67877644
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.094 Score=51.14 Aligned_cols=36 Identities=19% Similarity=0.235 Sum_probs=32.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.+.+++|.|.|- |-||+.+++.|...|++|+++++.
T Consensus 133 ~l~g~tvgIvG~-G~IG~~vA~~l~afG~~V~~~~~~ 168 (312)
T PRK15469 133 HREDFTIGILGA-GVLGSKVAQSLQTWGFPLRCWSRS 168 (312)
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 457899999985 999999999999999999999864
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.021 Score=55.35 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=32.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+++|+|+|. |.+|..++..|.+.|.+|++++|..
T Consensus 150 l~g~kvlViG~-G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 150 IHGSNVLVLGF-GRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCH
Confidence 46899999997 8899999999999999999998864
|
|
| >cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3 | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.14 Score=49.07 Aligned_cols=89 Identities=16% Similarity=0.215 Sum_probs=50.0
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccch-----hhhhhhhhcccC-CCceeEEEcc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIAS-----IHDRLRCWKSLT-GKNIELYIGD 160 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~v~~v~~D 160 (479)
+|||.|+ |++|.++++.|+..|. +++++|...-...+. +.+-+..... .....+.+.++. .-+++.+..+
T Consensus 1 kVlVVGa-GGlG~eilknLal~Gvg~I~IvD~D~Ve~SNL--nRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~ 77 (291)
T cd01488 1 KILVIGA-GGLGCELLKNLALSGFRNIHVIDMDTIDVSNL--NRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGK 77 (291)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEECCCEeccccc--CcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecc
Confidence 5899986 9999999999999996 677776532111110 1111111111 111112222222 2356677777
Q ss_pred cCChHHHHHHhhhcCCCEEEEcc
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFG 183 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A 183 (479)
+.+.+ .+.++ ++|+||.+.
T Consensus 78 i~~~~--~~f~~--~fdvVi~al 96 (291)
T cd01488 78 IQDKD--EEFYR--QFNIIICGL 96 (291)
T ss_pred cCchh--HHHhc--CCCEEEECC
Confidence 76542 45566 789999764
|
UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2. |
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.04 Score=55.31 Aligned_cols=67 Identities=28% Similarity=0.329 Sum_probs=51.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+++|+|.|+ |.+|+.++..+.+.|++|+++|........ . . .-..+.+|+.|.+
T Consensus 2 ~~~igilG~-Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~-------------------~---~---ad~~~~~~~~D~~ 55 (372)
T PRK06019 2 MKTIGIIGG-GQLGRMLALAAAPLGYKVIVLDPDPDSPAA-------------------Q---V---ADEVIVADYDDVA 55 (372)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchh-------------------H---h---CceEEecCCCCHH
Confidence 578999998 899999999999999999999865332100 0 0 1235568899999
Q ss_pred HHHHHhhhcCCCEEE
Q 011707 166 FLSESFKSFEPDAVV 180 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vi 180 (479)
.+.++.+ .+|+|.
T Consensus 56 ~l~~~a~--~~dvit 68 (372)
T PRK06019 56 ALRELAE--QCDVIT 68 (372)
T ss_pred HHHHHHh--cCCEEE
Confidence 9999988 789875
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.093 Score=45.95 Aligned_cols=35 Identities=34% Similarity=0.457 Sum_probs=29.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
|++|-++|- |-+|..+++.|++.|++|++.||...
T Consensus 1 m~~Ig~IGl-G~mG~~~a~~L~~~g~~v~~~d~~~~ 35 (163)
T PF03446_consen 1 MMKIGFIGL-GNMGSAMARNLAKAGYEVTVYDRSPE 35 (163)
T ss_dssp -BEEEEE---SHHHHHHHHHHHHTTTEEEEEESSHH
T ss_pred CCEEEEEch-HHHHHHHHHHHHhcCCeEEeeccchh
Confidence 578999986 99999999999999999999998654
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.05 Score=54.48 Aligned_cols=37 Identities=22% Similarity=0.193 Sum_probs=33.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+|+|.|.|. |-||+.+++.|...|.+|+++|+..
T Consensus 189 ~L~gktVGIvG~-G~IG~~vA~~l~~fG~~V~~~dr~~ 225 (385)
T PRK07574 189 DLEGMTVGIVGA-GRIGLAVLRRLKPFDVKLHYTDRHR 225 (385)
T ss_pred ecCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEECCCC
Confidence 467999999986 9999999999999999999998753
|
|
| >PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.044 Score=55.52 Aligned_cols=72 Identities=26% Similarity=0.265 Sum_probs=53.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
+.|+|||+|+ |.+|..++..+.+.|++|++++........ . . .-..+..|..|.
T Consensus 11 ~~~~ilIiG~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~-------------------~---~---ad~~~~~~~~d~ 64 (395)
T PRK09288 11 SATRVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAM-------------------Q---V---AHRSHVIDMLDG 64 (395)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCchH-------------------H---h---hhheEECCCCCH
Confidence 4579999987 899999999999999999999865421000 0 0 012456788899
Q ss_pred HHHHHHhhhcCCCEEEEc
Q 011707 165 EFLSESFKSFEPDAVVHF 182 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~ 182 (479)
+.+.++.+..++|.|+-.
T Consensus 65 ~~l~~~~~~~~id~vi~~ 82 (395)
T PRK09288 65 DALRAVIEREKPDYIVPE 82 (395)
T ss_pred HHHHHHHHHhCCCEEEEe
Confidence 999888887789998854
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.043 Score=53.43 Aligned_cols=67 Identities=25% Similarity=0.246 Sum_probs=51.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+++|.|.|| |.+|+.++..-.+-|++|+++|-.....-.. -.-..+.++..|++
T Consensus 1 ~~tvgIlGG-GQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~-------------------------va~~~i~~~~dD~~ 54 (375)
T COG0026 1 MKTVGILGG-GQLGRMMALAAARLGIKVIVLDPDADAPAAQ-------------------------VADRVIVAAYDDPE 54 (375)
T ss_pred CCeEEEEcC-cHHHHHHHHHHHhcCCEEEEecCCCCCchhh-------------------------cccceeecCCCCHH
Confidence 478999998 9999999999999999999998654422110 11234567777899
Q ss_pred HHHHHhhhcCCCEEE
Q 011707 166 FLSESFKSFEPDAVV 180 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vi 180 (479)
.+.++.+ ++|+|-
T Consensus 55 al~ela~--~~DViT 67 (375)
T COG0026 55 ALRELAA--KCDVIT 67 (375)
T ss_pred HHHHHHh--hCCEEE
Confidence 9999988 788775
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.08 Score=53.13 Aligned_cols=34 Identities=35% Similarity=0.600 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
..++|.|.||.|.+|..+++.|.+.|++|+++++
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~ 130 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQ 130 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCC
Confidence 4578999999999999999999999999999876
|
|
| >COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.042 Score=51.90 Aligned_cols=71 Identities=27% Similarity=0.309 Sum_probs=55.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.++|++.|. |=+|+.++-++-+.|.+|+++||...... ++ ---..+..|+.|.+
T Consensus 12 a~kvmLLGS-GELGKEvaIe~QRLG~eViAVDrY~~APA---------------mq----------VAhrs~Vi~MlD~~ 65 (394)
T COG0027 12 ATKVMLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPA---------------MQ----------VAHRSYVIDMLDGD 65 (394)
T ss_pred CeEEEEecC-CccchHHHHHHHhcCCEEEEecCcCCChh---------------hh----------hhhheeeeeccCHH
Confidence 467999985 99999999999999999999998654210 00 01123468999999
Q ss_pred HHHHHhhhcCCCEEEEc
Q 011707 166 FLSESFKSFEPDAVVHF 182 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~ 182 (479)
++.++++..++|.||--
T Consensus 66 al~avv~rekPd~IVpE 82 (394)
T COG0027 66 ALRAVVEREKPDYIVPE 82 (394)
T ss_pred HHHHHHHhhCCCeeeeh
Confidence 99999998899988753
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.051 Score=51.81 Aligned_cols=36 Identities=25% Similarity=0.308 Sum_probs=33.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.+.|++|+|+|+++.+|+-++..|+++|..|+++++
T Consensus 155 ~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s 190 (286)
T PRK14175 155 DLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHS 190 (286)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeC
Confidence 578999999999999999999999999999998764
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.04 Score=55.17 Aligned_cols=75 Identities=25% Similarity=0.241 Sum_probs=53.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+++|+|+|+ |-+|...++.|.+.|.+|+++|+.... .+.+....+. .+..+..+.
T Consensus 166 ~~~~VlViGa-G~vG~~aa~~a~~lGa~V~v~d~~~~~--------------------~~~l~~~~g~---~v~~~~~~~ 221 (370)
T TIGR00518 166 EPGDVTIIGG-GVVGTNAAKMANGLGATVTILDINIDR--------------------LRQLDAEFGG---RIHTRYSNA 221 (370)
T ss_pred CCceEEEEcC-CHHHHHHHHHHHHCCCeEEEEECCHHH--------------------HHHHHHhcCc---eeEeccCCH
Confidence 4677999987 999999999999999999999875321 1111111111 223455667
Q ss_pred HHHHHHhhhcCCCEEEEcccc
Q 011707 165 EFLSESFKSFEPDAVVHFGEQ 185 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~ 185 (479)
+.+.+.+. +.|+||++++.
T Consensus 222 ~~l~~~l~--~aDvVI~a~~~ 240 (370)
T TIGR00518 222 YEIEDAVK--RADLLIGAVLI 240 (370)
T ss_pred HHHHHHHc--cCCEEEEcccc
Confidence 78888887 78999998754
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.034 Score=53.42 Aligned_cols=37 Identities=35% Similarity=0.541 Sum_probs=32.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~ 120 (479)
..++++++|+|+ |++|+.++..|...| .+|++++|..
T Consensus 120 ~~~~k~vlVlGa-Gg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 120 DLKGKRILILGA-GGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCCCEEEEEcC-cHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 356889999997 999999999999999 7899998864
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.8 Score=43.92 Aligned_cols=92 Identities=15% Similarity=0.100 Sum_probs=58.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++.+|+|-|-||.+|+.+.+.|+..|+++++-....... ..+ ..+.-.
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~~v~~V~p~~~~----------------------------~~v----~G~~~y 52 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTNIVGGVTPGKGG----------------------------TTV----LGLPVF 52 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCCEEEEECCCCCc----------------------------cee----cCeecc
Confidence 356899999999999999999999998855422211000 011 123334
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
.+++++.+..++|.++-+.. -..+..+++.|.+.|++ .+|.+|+
T Consensus 53 ~sv~dlp~~~~~Dlavi~vp---------------------a~~v~~~l~e~~~~Gvk-~avIis~ 96 (286)
T TIGR01019 53 DSVKEAVEETGANASVIFVP---------------------APFAADAIFEAIDAGIE-LIVCITE 96 (286)
T ss_pred CCHHHHhhccCCCEEEEecC---------------------HHHHHHHHHHHHHCCCC-EEEEECC
Confidence 55666666323788886642 12233577777788887 6666665
|
ATP citrate lyases appear to form an outgroup. |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.082 Score=45.91 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=29.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.++||+|+|.|.+..+|+-|+..|.++|..|+..+.
T Consensus 33 ~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~ 68 (160)
T PF02882_consen 33 DLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHS 68 (160)
T ss_dssp STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-T
T ss_pred CCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccC
Confidence 468999999999999999999999999999998754
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.029 Score=55.86 Aligned_cols=33 Identities=30% Similarity=0.610 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEec
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDS 118 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr 118 (479)
++-+|||+|| |+||-.|++.|+..|+ +|+++|.
T Consensus 11 ~~~riLvVGa-GGIGCELLKnLal~gf~~IhiIDl 44 (603)
T KOG2013|consen 11 KSGRILVVGA-GGIGCELLKNLALTGFEEIHIIDL 44 (603)
T ss_pred ccCeEEEEec-CcccHHHHHHHHHhcCCeeEEEec
Confidence 4668999998 9999999999999997 5777765
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.13 Score=50.35 Aligned_cols=35 Identities=20% Similarity=0.184 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.+.+|||+||+|.+|..+++.+...|.+|+++++.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s 177 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGS 177 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 57899999999999999999888889999887754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.092 Score=52.20 Aligned_cols=34 Identities=26% Similarity=0.368 Sum_probs=28.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSL 119 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~ 119 (479)
+++|+|+||||++|..|++.|+++.. +++.+.+.
T Consensus 3 ~~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s 37 (349)
T PRK08664 3 KLKVGILGATGMVGQRFVQLLANHPWFEVTALAAS 37 (349)
T ss_pred CcEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcC
Confidence 57999999999999999999998754 88877443
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.14 Score=49.57 Aligned_cols=109 Identities=19% Similarity=0.148 Sum_probs=69.6
Q ss_pred EEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhccc---CCCceeEEEcccCChH
Q 011707 91 IIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL---TGKNIELYIGDICDFE 165 (479)
Q Consensus 91 VtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~~Dl~d~~ 165 (479)
|+|+ |.+|..++..|+..|. ++.++|....-... ...++.+. ...++.+..+ +
T Consensus 1 iIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g----------------~a~Dl~~~~~~~~~~~~i~~~---~-- 58 (299)
T TIGR01771 1 IIGA-GNVGSSTAFALLNQGIADEIVLIDINKDKAEG----------------EAMDLQHAASFLPTPKKIRSG---D-- 58 (299)
T ss_pred CCCc-CHHHHHHHHHHHhcCCCCEEEEEeCCCChhhH----------------HHHHHHHhhcccCCCeEEecC---C--
Confidence 4565 9999999999998874 78999875432111 11111111 1122333222 2
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
.+.++ +.|+||-+||...-+...+ ...+..|..-.+.+.+..++++.+..++.+|-
T Consensus 59 --~~~~~--daDivVitag~~rk~g~~R-----~dll~~N~~i~~~~~~~i~~~~p~~~vivvsN 114 (299)
T TIGR01771 59 --YSDCK--DADLVVITAGAPQKPGETR-----LELVGRNVRIMKSIVPEVVKSGFDGIFLVATN 114 (299)
T ss_pred --HHHHC--CCCEEEECCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 23555 8999999999743222111 34578899999999999999887767777664
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.21 Score=45.42 Aligned_cols=35 Identities=29% Similarity=0.487 Sum_probs=31.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.+++|+|||+|| |-+|...++.|++.|++|+++++
T Consensus 7 ~l~~k~vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~ 41 (202)
T PRK06718 7 DLSNKRVVIVGG-GKVAGRRAITLLKYGAHIVVISP 41 (202)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEcC
Confidence 357899999998 99999999999999999998864
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.13 Score=50.50 Aligned_cols=35 Identities=20% Similarity=0.165 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.+.+|||+||+|.+|..+++.+...|.+|+++++.
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s 172 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS 172 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 57899999999999999998888889999887764
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.3 Score=46.78 Aligned_cols=31 Identities=29% Similarity=0.468 Sum_probs=26.6
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC-eEEEEecc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY-EVAIVDSL 119 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~ 119 (479)
+|||.|+ |.+|..+++.|++.|. +++++|..
T Consensus 1 kVLIvGa-GGLGs~vA~~La~aGVg~ItlvD~D 32 (307)
T cd01486 1 KCLLLGA-GTLGCNVARNLLGWGVRHITFVDSG 32 (307)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCCeEEEECCC
Confidence 5899987 9999999999999995 67777653
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.091 Score=51.68 Aligned_cols=33 Identities=27% Similarity=0.266 Sum_probs=28.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
+.+|||+||+|.+|...++.+...|+.+++...
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~ 175 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKALGATVVAVVS 175 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHcCCcEEEEec
Confidence 889999999999999999999999976665544
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.08 Score=56.84 Aligned_cols=73 Identities=16% Similarity=0.299 Sum_probs=55.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.++|+|.|. |-+|+.+++.|.++|.+++++|.... +.+...+ .+..++.||.++++
T Consensus 400 ~~~vII~G~-Gr~G~~va~~L~~~g~~vvvID~d~~--------------------~v~~~~~---~g~~v~~GDat~~~ 455 (621)
T PRK03562 400 QPRVIIAGF-GRFGQIVGRLLLSSGVKMTVLDHDPD--------------------HIETLRK---FGMKVFYGDATRMD 455 (621)
T ss_pred cCcEEEEec-ChHHHHHHHHHHhCCCCEEEEECCHH--------------------HHHHHHh---cCCeEEEEeCCCHH
Confidence 357999997 99999999999999999999987543 2222222 36788999999999
Q ss_pred HHHHHhhhcCCCEEEEcc
Q 011707 166 FLSESFKSFEPDAVVHFG 183 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A 183 (479)
.++++=-+ +.|.||-+-
T Consensus 456 ~L~~agi~-~A~~vvv~~ 472 (621)
T PRK03562 456 LLESAGAA-KAEVLINAI 472 (621)
T ss_pred HHHhcCCC-cCCEEEEEe
Confidence 88765322 678888553
|
|
| >PRK06849 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.06 Score=54.43 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=33.1
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
++|+|||||+...+|..+++.|.+.|++|+++|...
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 468999999999999999999999999999998754
|
|
| >cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.12 Score=50.60 Aligned_cols=35 Identities=23% Similarity=0.259 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.+.++||+||+|.+|..+++.+...|.+|+++.+.
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~ 196 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS 196 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC
Confidence 47799999999999999999999999999888754
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.16 Score=41.60 Aligned_cols=32 Identities=31% Similarity=0.592 Sum_probs=25.0
Q ss_pred cEEEEEcCC---chhhHHHHHHHHhCCCeEEEEec
Q 011707 87 KRVMIIGGD---GYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 87 ~~vLVtGat---G~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
|+|.|.|++ +-.|..+++.|.+.|++|+.+.-
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp 35 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNP 35 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEEST
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECC
Confidence 589999987 77899999999999999998853
|
|
| >PRK08057 cobalt-precorrin-6x reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.4 Score=45.00 Aligned_cols=93 Identities=15% Similarity=0.093 Sum_probs=69.1
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+++|||.|||+ =|+.|++.|.+.|++|++-.-...+. .....+..+.|-+.+.+
T Consensus 2 ~~~IlvlgGT~-egr~la~~L~~~g~~v~~Svat~~g~-------------------------~~~~~~~v~~G~l~~~~ 55 (248)
T PRK08057 2 MPRILLLGGTS-EARALARALAAAGVDIVLSLAGRTGG-------------------------PADLPGPVRVGGFGGAE 55 (248)
T ss_pred CceEEEEechH-HHHHHHHHHHhCCCeEEEEEccCCCC-------------------------cccCCceEEECCCCCHH
Confidence 57899999975 69999999999999887643221110 01236677788888999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCc
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQE 222 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~ 222 (479)
.+.+.+++.+++.||+.. +| --..-+.++.++|++.+..
T Consensus 56 ~l~~~l~~~~i~~VIDAT----------HP--------fA~~is~~a~~ac~~~~ip 94 (248)
T PRK08057 56 GLAAYLREEGIDLVIDAT----------HP--------YAAQISANAAAACRALGIP 94 (248)
T ss_pred HHHHHHHHCCCCEEEECC----------Cc--------cHHHHHHHHHHHHHHhCCc
Confidence 999999988999999874 22 1234567899999999865
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.17 Score=56.96 Aligned_cols=124 Identities=15% Similarity=0.080 Sum_probs=73.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC----CCCCCccchhhhhhhhhcccCC-CceeEE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG----LDSLTPIASIHDRLRCWKSLTG-KNIELY 157 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~v~~v 157 (479)
+...+|||.|+ |++|..+++.|+..|. .|+++|...-...+.... ...+.. .......+.+.++.. -.++.+
T Consensus 22 L~~s~VLIiG~-gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk-~Kaea~~~~L~eLNp~V~V~~~ 99 (1008)
T TIGR01408 22 MAKSNVLISGM-GGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGR-NRAEAVVKKLAELNPYVHVSSS 99 (1008)
T ss_pred HhhCcEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCc-hHHHHHHHHHHHHCCCceEEEe
Confidence 44668999997 8899999999999996 688887543221111100 000000 011122223333321 234444
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
..+++ ++.++ ++|+||.+-. |......+-++|++.+....||+.++.+.||.
T Consensus 100 ~~~l~-----~e~l~--~fdvVV~t~~--------------------~~~~~~~in~~cr~~~~~I~fI~~~~~G~~G~ 151 (1008)
T TIGR01408 100 SVPFN-----EEFLD--KFQCVVLTEM--------------------SLPLQKEINDFCHSQCPPIAFISADVRGLFGS 151 (1008)
T ss_pred cccCC-----HHHHc--CCCEEEECCC--------------------CHHHHHHHHHHHHHcCCCeEEEEEeecceEEE
Confidence 44443 24566 7899997631 44444567899999884446999888887774
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.16 Score=50.17 Aligned_cols=34 Identities=18% Similarity=0.214 Sum_probs=29.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSL 119 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~ 119 (479)
+.+|||+||+|.+|...++.+...|. +|+++++.
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s 189 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGS 189 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 37999999999999999988888898 79887654
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.075 Score=52.41 Aligned_cols=36 Identities=25% Similarity=0.200 Sum_probs=33.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.+.+|+|.|.|- |-||+.+++.|...|.+|+++|+.
T Consensus 147 ~L~gktvgIiG~-G~IG~~vA~~l~~~G~~V~~~d~~ 182 (333)
T PRK13243 147 DVYGKTIGIIGF-GRIGQAVARRAKGFGMRILYYSRT 182 (333)
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCC
Confidence 468999999997 999999999999999999998874
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.078 Score=51.43 Aligned_cols=36 Identities=22% Similarity=0.128 Sum_probs=32.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.+.+|+|.|.|- |-||+.+++.|...|.+|+++++.
T Consensus 119 ~L~gktvgIiG~-G~IG~~vA~~l~afG~~V~~~~r~ 154 (303)
T PRK06436 119 LLYNKSLGILGY-GGIGRRVALLAKAFGMNIYAYTRS 154 (303)
T ss_pred CCCCCEEEEECc-CHHHHHHHHHHHHCCCEEEEECCC
Confidence 568999999986 999999999888889999999874
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.051 Score=51.92 Aligned_cols=36 Identities=33% Similarity=0.458 Sum_probs=32.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.++++++|+|+ |.+|+.++..|++.|++|++++|..
T Consensus 115 ~~~k~vliiGa-Gg~g~aia~~L~~~g~~v~v~~R~~ 150 (270)
T TIGR00507 115 RPNQRVLIIGA-GGAARAVALPLLKADCNVIIANRTV 150 (270)
T ss_pred ccCCEEEEEcC-cHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 35789999998 8999999999999999999988754
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR01142 purT phosphoribosylglycinamide formyltransferase 2 | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.075 Score=53.51 Aligned_cols=70 Identities=24% Similarity=0.267 Sum_probs=53.0
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFL 167 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~ 167 (479)
+|+|.|+ |.+|..+++.+.+.|++|+++|........ . . .-..+.+|..|.+.+
T Consensus 1 kililG~-g~~~~~l~~aa~~~G~~v~~~d~~~~~~~~-------------------~---~---ad~~~~~~~~d~~~l 54 (380)
T TIGR01142 1 RVLLLGS-GELGKEVAIEAQRLGVEVIAVDRYANAPAM-------------------Q---V---AHRSYVINMLDGDAL 54 (380)
T ss_pred CEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchh-------------------h---h---CceEEEcCCCCHHHH
Confidence 5899996 999999999999999999999875431100 0 0 113456788899999
Q ss_pred HHHhhhcCCCEEEEcc
Q 011707 168 SESFKSFEPDAVVHFG 183 (479)
Q Consensus 168 ~~~~~~~~~D~Vih~A 183 (479)
.++.+..++|+|+-..
T Consensus 55 ~~~~~~~~id~v~~~~ 70 (380)
T TIGR01142 55 RAVIEREKPDYIVPEI 70 (380)
T ss_pred HHHHHHhCCCEEEecc
Confidence 9998877899998654
|
This enzyme is an alternative to PurN (TIGR00639) |
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.064 Score=51.45 Aligned_cols=36 Identities=25% Similarity=0.297 Sum_probs=33.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.+.||+|.|.|.+|.+|+.++..|+++|+.|++.++
T Consensus 156 ~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~ 191 (301)
T PRK14194 156 DLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHS 191 (301)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECC
Confidence 578999999999999999999999999999998764
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.11 Score=51.64 Aligned_cols=36 Identities=25% Similarity=0.222 Sum_probs=33.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.+.+|++.|.|- |-||+.+++.|...|.+|+++++.
T Consensus 156 ~l~gktvGIiG~-G~IG~~vA~~l~afG~~V~~~dr~ 191 (347)
T PLN02928 156 TLFGKTVFILGY-GAIGIELAKRLRPFGVKLLATRRS 191 (347)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHhhCCCEEEEECCC
Confidence 467999999986 999999999999999999999875
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.18 Score=48.91 Aligned_cols=114 Identities=19% Similarity=0.175 Sum_probs=66.4
Q ss_pred EEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHH
Q 011707 89 VMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFL 167 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~ 167 (479)
|.|+|+ |.+|..++..|+..|. +|+++|+........ ..+..+ ..........+ ... +| .
T Consensus 1 I~IIGa-G~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~------------~~dl~~-~~~~~~~~~~I-~~t-~d---~ 61 (300)
T cd01339 1 ISIIGA-GNVGATLAQLLALKELGDVVLLDIVEGLPQGK------------ALDISQ-AAPILGSDTKV-TGT-ND---Y 61 (300)
T ss_pred CEEECC-CHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHH------------HHHHHH-hhhhcCCCeEE-EEc-CC---H
Confidence 468998 9999999999998876 999999864311110 000111 11111111221 110 12 2
Q ss_pred HHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 168 SESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 168 ~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ .++ +.|+||.+++....+.. +. ...+..|+.-.+.+++...+...+..+|.+|
T Consensus 62 ~-~l~--dADiVIit~g~p~~~~~--~r---~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~s 115 (300)
T cd01339 62 E-DIA--GSDVVVITAGIPRKPGM--SR---DDLLGTNAKIVKEVAENIKKYAPNAIVIVVT 115 (300)
T ss_pred H-HhC--CCCEEEEecCCCCCcCC--CH---HHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 3 356 89999999986432211 11 1234568888888888888877664555555
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1 | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.24 Score=50.27 Aligned_cols=129 Identities=14% Similarity=0.028 Sum_probs=71.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCc-----cchhhhhhhhhcccCC-CceeE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTP-----IASIHDRLRCWKSLTG-KNIEL 156 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~v~~ 156 (479)
+...+|||.|+ |.+|..+++-|+..|. .++++|...-...+... .-+.. ........+.+.++.. -.+++
T Consensus 18 L~~s~VlliG~-gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~--nFfl~~~diGk~kA~~~~~~L~eLNp~V~i~~ 94 (425)
T cd01493 18 LESAHVCLLNA-TATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGN--NFFLDASSLGKSRAEATCELLQELNPDVNGSA 94 (425)
T ss_pred HhhCeEEEEcC-cHHHHHHHHHHHHcCCCeEEEECCCcCchhhccc--cccCChhhcCcHHHHHHHHHHHHHCCCCEEEE
Confidence 34668999987 5699999999999996 68888754321111100 00000 0001111222333322 13445
Q ss_pred EEcccCCh-HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccccc
Q 011707 157 YIGDICDF-EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 157 v~~Dl~d~-~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g 235 (479)
+..++.+. +...+.+. ++|+||-+-. +......+.+.|.+.+ ..||+++|.+.||
T Consensus 95 ~~e~~~~ll~~~~~f~~--~fdiVI~t~~--------------------~~~~~~~L~~~c~~~~--iPlI~~~s~G~~G 150 (425)
T cd01493 95 VEESPEALLDNDPSFFS--QFTVVIATNL--------------------PESTLLRLADVLWSAN--IPLLYVRSYGLYG 150 (425)
T ss_pred EecccchhhhhHHHHhc--CCCEEEECCC--------------------CHHHHHHHHHHHHHcC--CCEEEEecccCEE
Confidence 55444331 11234555 6788884321 2222335678888887 4699999999998
Q ss_pred CCCC
Q 011707 236 TPNI 239 (479)
Q Consensus 236 ~~~~ 239 (479)
....
T Consensus 151 ~v~v 154 (425)
T cd01493 151 YIRI 154 (425)
T ss_pred EEEE
Confidence 6543
|
APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain. |
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.1 Score=52.18 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=32.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.+.+|+|.|+|. |-||+.+++.|...|.+|+++|+.
T Consensus 196 ~L~gktVGIVG~-G~IG~~vA~~L~afG~~V~~~d~~ 231 (386)
T PLN03139 196 DLEGKTVGTVGA-GRIGRLLLQRLKPFNCNLLYHDRL 231 (386)
T ss_pred CCCCCEEEEEee-cHHHHHHHHHHHHCCCEEEEECCC
Confidence 468999999995 999999999999999999998864
|
|
| >cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.22 Score=48.72 Aligned_cols=36 Identities=17% Similarity=0.070 Sum_probs=32.1
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+++|+|++|.+|..+++.+...|++|+++++..
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~ 201 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSE 201 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999999999999999999999998887643
|
This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone |
| >PRK06728 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.90 E-value=0.15 Score=50.26 Aligned_cols=33 Identities=21% Similarity=0.396 Sum_probs=26.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHh-CCCe---EEEEe
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSN-KGYE---VAIVD 117 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~-~G~~---V~~~d 117 (479)
++.+|-|.||||++|..|++.|.+ ..++ +..+.
T Consensus 4 ~~~~VaIvGATG~vG~ell~lL~~h~~f~v~~l~~~a 40 (347)
T PRK06728 4 KGYHVAVVGATGAVGQKIIELLEKETKFNIAEVTLLS 40 (347)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHCCCCCcccEEEEE
Confidence 356899999999999999999995 5666 44443
|
|
| >TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.25 Score=51.64 Aligned_cols=105 Identities=14% Similarity=0.155 Sum_probs=70.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+..+|+|.|. |.+|.+++..|++.|. ++++++-..-. .++.++.++.+..++ .+.++.+...|.++
T Consensus 128 R~akVlVlG~-Gg~~s~lv~sL~~sG~~~I~~vd~D~v~--------SNlnRIgEl~e~A~~----~n~~v~v~~i~~~~ 194 (637)
T TIGR03693 128 RNAKILAAGS-GDFLTKLVRSLIDSGFPRFHAIVTDAEE--------HALDRIHELAEIAEE----TDDALLVQEIDFAE 194 (637)
T ss_pred hcccEEEEec-CchHHHHHHHHHhcCCCcEEEEeccccc--------hhhhHHHHHHHHHHH----hCCCCceEeccCCc
Confidence 4668999986 9999999999999996 56676432110 111112233222222 34567777777788
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCc
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQE 222 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~ 222 (479)
.+++.++++ ++|+|++.+-. .+......+.++|.+.|..
T Consensus 195 ~~dl~ev~~--~~DiVi~vsDd------------------y~~~~Lr~lN~acvkegk~ 233 (637)
T TIGR03693 195 DQHLHEAFE--PADWVLYVSDN------------------GDIDDLHALHAFCKEEGKG 233 (637)
T ss_pred chhHHHhhc--CCcEEEEECCC------------------CChHHHHHHHHHHHHcCCC
Confidence 889999998 89999988731 2334456777888888754
|
Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein. |
| >TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.3 Score=45.63 Aligned_cols=34 Identities=21% Similarity=0.296 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC-----------CeEEEEecc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG-----------YEVAIVDSL 119 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G-----------~~V~~~dr~ 119 (479)
+..+|+|+|+ |++|.++++.|++.| .+++++|..
T Consensus 10 ~~~~V~vvG~-GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D 54 (244)
T TIGR03736 10 RPVSVVLVGA-GGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDD 54 (244)
T ss_pred CCCeEEEEcC-ChHHHHHHHHHHHccccccccCCCCCCEEEEECCC
Confidence 4679999998 999999999999874 278888753
|
A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein. |
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.18 Score=49.20 Aligned_cols=35 Identities=23% Similarity=0.218 Sum_probs=31.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
-++|.|+|+ |-+|..++..|+..|++|+++|+...
T Consensus 7 i~~VaVIGa-G~MG~giA~~~a~aG~~V~l~D~~~~ 41 (321)
T PRK07066 7 IKTFAAIGS-GVIGSGWVARALAHGLDVVAWDPAPG 41 (321)
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 468999987 99999999999999999999998653
|
|
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.27 Score=48.89 Aligned_cols=36 Identities=17% Similarity=0.112 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
..+.+|||+||+|.+|...++.+...|.+|+++++.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~ 192 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGS 192 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCC
Confidence 357899999999999999998888889999887654
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.073 Score=51.32 Aligned_cols=36 Identities=22% Similarity=0.322 Sum_probs=32.1
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRR 122 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~ 122 (479)
.++|.|.|+ |.+|..++..|+..|++|+++|+....
T Consensus 5 ~~~V~ViGa-G~mG~~iA~~~a~~G~~V~l~d~~~~~ 40 (286)
T PRK07819 5 IQRVGVVGA-GQMGAGIAEVCARAGVDVLVFETTEEL 40 (286)
T ss_pred ccEEEEEcc-cHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 358999998 999999999999999999999987653
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.079 Score=50.96 Aligned_cols=36 Identities=31% Similarity=0.343 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.++++|+|.|+ |+.|++++..|+..|. +|++++|..
T Consensus 125 ~~~k~vlIlGa-GGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 125 ASLERVVQLGA-GGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred ccCCEEEEECC-cHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 46789999998 8899999999999997 799988754
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.14 Score=43.52 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=33.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.++||+|+|.|.+.-+|.-++..|.++|..|+.+++
T Consensus 25 ~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~ 60 (140)
T cd05212 25 RLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDW 60 (140)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCC
Confidence 568999999999999999999999999999998764
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.046 Score=50.45 Aligned_cols=34 Identities=26% Similarity=0.467 Sum_probs=30.9
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
|+|.|+||+|.+|..++..|++.|++|++.+|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 5799999999999999999999999999888754
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.089 Score=50.80 Aligned_cols=34 Identities=21% Similarity=0.501 Sum_probs=31.0
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
++|.|+|+ |.+|..++..|++.|++|+++|+...
T Consensus 2 ~~V~VIG~-G~mG~~iA~~la~~G~~V~~~d~~~~ 35 (288)
T PRK09260 2 EKLVVVGA-GVMGRGIAYVFAVSGFQTTLVDIKQE 35 (288)
T ss_pred cEEEEECc-cHHHHHHHHHHHhCCCcEEEEeCCHH
Confidence 57999998 99999999999999999999998654
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.22 Score=49.14 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=29.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCe-EEEEecc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYE-VAIVDSL 119 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~-V~~~dr~ 119 (479)
.+.+|||+|+ |.+|..+++.+...|.+ |+++++.
T Consensus 163 ~g~~vlV~G~-G~vG~~~~~~ak~~G~~~vi~~~~~ 197 (339)
T cd08239 163 GRDTVLVVGA-GPVGLGALMLARALGAEDVIGVDPS 197 (339)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4789999986 99999999988888998 8887654
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.19 Score=48.29 Aligned_cols=34 Identities=29% Similarity=0.515 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCe-EEEEecc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYE-VAIVDSL 119 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~-V~~~dr~ 119 (479)
.+.+|||.|+ |.||...++.+...|.+ |+++++.
T Consensus 120 ~g~~VlV~G~-G~vG~~~~~~ak~~G~~~Vi~~~~~ 154 (280)
T TIGR03366 120 KGRRVLVVGA-GMLGLTAAAAAAAAGAARVVAADPS 154 (280)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 5789999987 89999998888888986 7777643
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK08040 putative semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.18 Score=49.53 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC---eEEEEe
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY---EVAIVD 117 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~---~V~~~d 117 (479)
++++|.|.||||++|..|++.|.++.| ++..+.
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~la 38 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALA 38 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEE
Confidence 467999999999999999999998644 555553
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.11 Score=50.07 Aligned_cols=34 Identities=29% Similarity=0.430 Sum_probs=30.7
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
++|.|.|+ |.+|..++..|++.|++|+++|+...
T Consensus 4 ~kIaViGa-G~mG~~iA~~la~~G~~V~l~d~~~~ 37 (287)
T PRK08293 4 KNVTVAGA-GVLGSQIAFQTAFHGFDVTIYDISDE 37 (287)
T ss_pred cEEEEECC-CHHHHHHHHHHHhcCCeEEEEeCCHH
Confidence 68999987 99999999999999999999997643
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.29 Score=49.25 Aligned_cols=71 Identities=20% Similarity=0.224 Sum_probs=52.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
...++|.|. |-+|..++++|.++|.+|++++..... +....+..++.||.+|++
T Consensus 240 k~HvII~G~-g~lg~~v~~~L~~~g~~vvVId~d~~~-------------------------~~~~~g~~vI~GD~td~e 293 (393)
T PRK10537 240 KDHFIICGH-SPLAINTYLGLRQRGQAVTVIVPLGLE-------------------------HRLPDDADLIPGDSSDSA 293 (393)
T ss_pred CCeEEEECC-ChHHHHHHHHHHHCCCCEEEEECchhh-------------------------hhccCCCcEEEeCCCCHH
Confidence 457999987 889999999999999999888743110 001245778999999999
Q ss_pred HHHHHhhhcCCCEEEEcc
Q 011707 166 FLSESFKSFEPDAVVHFG 183 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A 183 (479)
.++++=-+ +.+.|+-+.
T Consensus 294 ~L~~AgI~-~A~aVI~~t 310 (393)
T PRK10537 294 VLKKAGAA-RARAILALR 310 (393)
T ss_pred HHHhcCcc-cCCEEEEcC
Confidence 88776432 678887543
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.14 Score=48.86 Aligned_cols=36 Identities=17% Similarity=0.322 Sum_probs=33.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.+.||+|+|+|-+..+|+-|+..|+++|..|+++..
T Consensus 156 ~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs 191 (285)
T PRK10792 156 DTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHR 191 (285)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEEC
Confidence 567999999999999999999999999999998754
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.25 Score=49.22 Aligned_cols=34 Identities=26% Similarity=0.261 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCe-EEEEecc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYE-VAIVDSL 119 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~-V~~~dr~ 119 (479)
.+.+|||.|+ |.+|...++.+...|.+ |+++++.
T Consensus 176 ~g~~VlV~G~-g~vG~~a~~~ak~~G~~~Vi~~~~~ 210 (358)
T TIGR03451 176 RGDSVAVIGC-GGVGDAAIAGAALAGASKIIAVDID 210 (358)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 5789999985 99999999988888985 8887764
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.42 Score=50.50 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSL 119 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~ 119 (479)
++..+|||.|+ |++|..+++.|++.|. +++++|..
T Consensus 336 L~~~kVLIvGa-GGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 336 YSQLKVLLLGA-GTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HhcCeEEEECC-cHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 34678999998 9999999999999996 67777753
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.082 Score=40.07 Aligned_cols=33 Identities=39% Similarity=0.668 Sum_probs=29.5
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
+|+|.|| |++|-.++..|.+.|.+|+++.+...
T Consensus 1 ~vvViGg-G~ig~E~A~~l~~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGG-GFIGIELAEALAELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESS-SHHHHHHHHHHHHTTSEEEEEESSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHhCcEEEEEeccch
Confidence 5789987 99999999999999999999987543
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.32 Score=47.47 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=31.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+|||.|++|.+|..+++.+...|.+|+++++..
T Consensus 146 ~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~ 181 (326)
T cd08289 146 EQGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKA 181 (326)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCH
Confidence 367999999999999999999988999998887643
|
yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.18 Score=51.33 Aligned_cols=35 Identities=34% Similarity=0.456 Sum_probs=30.7
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRR 122 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~ 122 (479)
|+|.|+|. |++|..++..|++.|++|+++|+....
T Consensus 1 mkI~vIGl-G~~G~~lA~~La~~G~~V~~~d~~~~~ 35 (411)
T TIGR03026 1 MKIAVIGL-GYVGLPLAALLADLGHEVTGVDIDQEK 35 (411)
T ss_pred CEEEEECC-CchhHHHHHHHHhcCCeEEEEECCHHH
Confidence 46889975 999999999999999999999986543
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=94.50 E-value=0.1 Score=50.10 Aligned_cols=36 Identities=19% Similarity=0.323 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.++++++|.|+ |+.|+.++..|++.|. +|++++|..
T Consensus 123 ~~~k~vlvlGa-GGaarai~~aL~~~G~~~i~I~nRt~ 159 (282)
T TIGR01809 123 LAGFRGLVIGA-GGTSRAAVYALASLGVTDITVINRNP 159 (282)
T ss_pred cCCceEEEEcC-cHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 46889999987 9999999999999996 688888753
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.13 Score=49.49 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=32.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEe
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD 117 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~d 117 (479)
.+.||+|+|.|-+|.+|..++..|+++|+.|++.+
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 57899999999999999999999999999999874
|
|
| >PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.63 Score=43.72 Aligned_cols=95 Identities=21% Similarity=0.193 Sum_probs=67.3
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||.|||+ =|+.|+..|.+.|+ |++-.-.+-+. .........+..+.+-+.+.+.
T Consensus 1 m~ILvlgGTt-E~r~la~~L~~~g~-v~~sv~t~~g~---------------------~~~~~~~~~~~v~~G~lg~~~~ 57 (249)
T PF02571_consen 1 MKILVLGGTT-EGRKLAERLAEAGY-VIVSVATSYGG---------------------ELLKPELPGLEVRVGRLGDEEG 57 (249)
T ss_pred CEEEEEechH-HHHHHHHHHHhcCC-EEEEEEhhhhH---------------------hhhccccCCceEEECCCCCHHH
Confidence 6899999975 69999999999998 54322211110 0110111356788888889999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQE 222 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~ 222 (479)
+.+.+++.+++.||+.. +| --..-+.|+.++|++.|+.
T Consensus 58 l~~~l~~~~i~~vIDAT----------HP--------fA~~is~na~~a~~~~~ip 95 (249)
T PF02571_consen 58 LAEFLRENGIDAVIDAT----------HP--------FAAEISQNAIEACRELGIP 95 (249)
T ss_pred HHHHHHhCCCcEEEECC----------Cc--------hHHHHHHHHHHHHhhcCcc
Confidence 99999988999999874 22 1234567899999999865
|
Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.19 Score=44.87 Aligned_cols=36 Identities=31% Similarity=0.280 Sum_probs=33.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.++||+|+|.|-+.-+|+-|+..|+++|+.|+++|.
T Consensus 59 ~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~ 94 (197)
T cd01079 59 RLYGKTITIINRSEVVGRPLAALLANDGARVYSVDI 94 (197)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEec
Confidence 578999999999999999999999999999999875
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.47 E-value=0.27 Score=48.72 Aligned_cols=31 Identities=16% Similarity=0.331 Sum_probs=24.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhC-CCe---EEEEe
Q 011707 87 KRVMIIGGDGYCGWATALHLSNK-GYE---VAIVD 117 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~-G~~---V~~~d 117 (479)
++|-|.||||++|..|++.|+++ .+. ++.+.
T Consensus 2 ~~VAIVGATG~vG~ell~llL~~~~f~~~~l~~~s 36 (369)
T PRK06598 2 KKVGFVGWRGMVGSVLMQRMVEENDFDLIEPVFFS 36 (369)
T ss_pred eEEEEEeCCCHHHHHHHHHHHhCCCCCcCcEEEec
Confidence 68999999999999999966665 565 55543
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.11 Score=46.92 Aligned_cols=33 Identities=39% Similarity=0.335 Sum_probs=26.8
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
|++. +||+|-||..|+++|...||+|++-.++.
T Consensus 2 ~~~~-i~GtGniG~alA~~~a~ag~eV~igs~r~ 34 (211)
T COG2085 2 MIIA-IIGTGNIGSALALRLAKAGHEVIIGSSRG 34 (211)
T ss_pred cEEE-EeccChHHHHHHHHHHhCCCeEEEecCCC
Confidence 4444 45679999999999999999999876543
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.26 Score=46.43 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+.+|||+|+++ +|..+++.+...|.+|+++++..
T Consensus 133 ~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~~ 168 (271)
T cd05188 133 KPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRSD 168 (271)
T ss_pred CCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCCH
Confidence 3578999999998 99999999988999999887643
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.15 Score=53.15 Aligned_cols=36 Identities=33% Similarity=0.402 Sum_probs=32.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
..++++|+|+|+ |++|..+++.|.++|++|+++|+.
T Consensus 13 ~~~~~~v~viG~-G~~G~~~A~~L~~~G~~V~~~d~~ 48 (480)
T PRK01438 13 DWQGLRVVVAGL-GVSGFAAADALLELGARVTVVDDG 48 (480)
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 456889999997 999999999999999999999864
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=94.39 E-value=0.14 Score=42.58 Aligned_cols=33 Identities=39% Similarity=0.362 Sum_probs=28.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
..+|-|+|+ |-+|.+|++.|.+.|+.|..+...
T Consensus 10 ~l~I~iIGa-GrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGA-GRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp --EEEEECT-SCCCCHHHHHHHHTTSEEEEESSC
T ss_pred ccEEEEECC-CHHHHHHHHHHHHCCCeEEEEEeC
Confidence 568999998 999999999999999999987544
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.11 Score=49.86 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=31.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.++++++|.|| |+.|++++..|++.|. +|++++|..
T Consensus 125 ~~~k~vlilGa-GGaarAi~~aL~~~g~~~i~i~nR~~ 161 (283)
T PRK14027 125 AKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDT 161 (283)
T ss_pred cCCCeEEEECC-cHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 45789999998 9999999999999996 688887753
|
|
| >COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.19 Score=48.65 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=24.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeE
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEV 113 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V 113 (479)
+++|-|.||||-+|+.+++.|.++.+.+
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~ 28 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPF 28 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCc
Confidence 4689999999999999999999976543
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.12 Score=50.65 Aligned_cols=37 Identities=35% Similarity=0.281 Sum_probs=33.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+|++-|.|. |-||+.+++.|..-|.+|++.|+..
T Consensus 139 el~gkTvGIiG~-G~IG~~va~~l~afgm~v~~~d~~~ 175 (324)
T COG0111 139 ELAGKTVGIIGL-GRIGRAVAKRLKAFGMKVIGYDPYS 175 (324)
T ss_pred cccCCEEEEECC-CHHHHHHHHHHHhCCCeEEEECCCC
Confidence 456999999986 9999999999999999999999843
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.089 Score=47.78 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=33.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+++|+|+|+|. |-+|+++++.|.+.|++|++.|+..
T Consensus 25 ~l~gk~v~I~G~-G~vG~~~A~~L~~~G~~Vvv~D~~~ 61 (200)
T cd01075 25 SLEGKTVAVQGL-GKVGYKLAEHLLEEGAKLIVADINE 61 (200)
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 467899999998 7999999999999999999888653
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.23 Score=47.44 Aligned_cols=99 Identities=20% Similarity=0.209 Sum_probs=61.7
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC-C
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC-D 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~-d 163 (479)
.|+.+-|+|+.| ||.-=++.-.+-|++|+++++..+.. .+....+ +.+.+ .|.+ |
T Consensus 181 pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~~~kk-------------------eea~~~L---GAd~f-v~~~~d 236 (360)
T KOG0023|consen 181 PGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTSSKKK-------------------EEAIKSL---GADVF-VDSTED 236 (360)
T ss_pred CCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCCchhH-------------------HHHHHhc---Cccee-EEecCC
Confidence 589999999977 99776666666699999999865321 1122111 23333 3444 7
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
++.++++.+ -.|.++|++.... .. + ...++.+++..| ++|+++-
T Consensus 237 ~d~~~~~~~--~~dg~~~~v~~~a-----~~----------~---~~~~~~~lk~~G---t~V~vg~ 280 (360)
T KOG0023|consen 237 PDIMKAIMK--TTDGGIDTVSNLA-----EH----------A---LEPLLGLLKVNG---TLVLVGL 280 (360)
T ss_pred HHHHHHHHH--hhcCcceeeeecc-----cc----------c---hHHHHHHhhcCC---EEEEEeC
Confidence 888888877 4566666653110 00 1 123566666655 8998875
|
|
| >TIGR01408 Ube1 ubiquitin-activating enzyme E1 | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.35 Score=54.47 Aligned_cols=127 Identities=16% Similarity=0.130 Sum_probs=75.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC------eEEEEecccccccccccCCCCCCccch-----hhhhhhhhcccCC-
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY------EVAIVDSLIRRLFDHQLGLDSLTPIAS-----IHDRLRCWKSLTG- 151 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~------~V~~~dr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~- 151 (479)
+...+|||.|+ |+||..+++.|+..|. +++++|...-...+. +.+-+..... ..-..+.+.++..
T Consensus 417 L~~~kVlvvGa-GGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNL--nRQfLf~~~dIGk~Ka~vaa~~l~~~Np~ 493 (1008)
T TIGR01408 417 LQNLNIFLVGC-GAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNL--NRQFLFRPHHIGKPKSYTAADATLKINPQ 493 (1008)
T ss_pred HhhCcEEEECC-ChHHHHHHHHHHHhCCCcCCCCeEEEECCCEeccccc--CcCcCCChhHcCcHHHHHHHHHHHHHCCC
Confidence 34578999996 9999999999999987 788887532111111 1111111111 1111112222221
Q ss_pred CceeEEEcccCCh-HHH--HHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEe
Q 011707 152 KNIELYIGDICDF-EFL--SESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKL 228 (479)
Q Consensus 152 ~~v~~v~~Dl~d~-~~~--~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~ 228 (479)
-+++.+...+... +.+ .+.++ ++|+||++.- |+..-..+-+.|...+ +.+|..
T Consensus 494 v~I~~~~~~v~~~~e~i~~~~f~~--~~dvVi~alD--------------------n~~aR~~vn~~c~~~~--iPli~~ 549 (1008)
T TIGR01408 494 IKIDAHQNRVGPETETIFNDEFYE--KLDVVINALD--------------------NVEARRYVDSRCLAFL--KPLLES 549 (1008)
T ss_pred CEEEEEEeecChhhhhhhhHHHhh--CCCEEEECCC--------------------CHHHHHHHHHHHHHcC--CCEEEE
Confidence 2466666666432 222 34455 7899998641 5666677888999887 468888
Q ss_pred eccccccCC
Q 011707 229 GTMGEYGTP 237 (479)
Q Consensus 229 SS~~v~g~~ 237 (479)
++.+-+|..
T Consensus 550 gt~G~~G~v 558 (1008)
T TIGR01408 550 GTLGTKGNT 558 (1008)
T ss_pred eccCceeeE
Confidence 887777763
|
This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions. |
| >cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2 | Back alignment and domain information |
|---|
Probab=94.25 E-value=0.33 Score=47.33 Aligned_cols=35 Identities=14% Similarity=0.150 Sum_probs=31.1
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.+.+|||.|++|.+|..+++.+...|.+|+++.+.
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~ 173 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRR 173 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecC
Confidence 57899999999999999999999999999887654
|
2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.16 Score=52.00 Aligned_cols=36 Identities=31% Similarity=0.570 Sum_probs=31.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
..+++|+|+|+ |.+|..+++.|...|. +|++++|..
T Consensus 180 ~~~~~vlViGa-G~iG~~~a~~L~~~G~~~V~v~~r~~ 216 (423)
T PRK00045 180 LSGKKVLVIGA-GEMGELVAKHLAEKGVRKITVANRTL 216 (423)
T ss_pred ccCCEEEEECc-hHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 56899999987 9999999999999997 788887753
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.24 Score=48.88 Aligned_cols=34 Identities=35% Similarity=0.512 Sum_probs=30.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
|+|-|.| +||+|...+..|++.||+|+|+|....
T Consensus 1 MkI~viG-tGYVGLv~g~~lA~~GHeVv~vDid~~ 34 (414)
T COG1004 1 MKITVIG-TGYVGLVTGACLAELGHEVVCVDIDES 34 (414)
T ss_pred CceEEEC-CchHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 6788997 599999999999999999999998654
|
|
| >cd05288 PGDH Prostaglandin dehydrogenases | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.34 Score=47.38 Aligned_cols=36 Identities=14% Similarity=0.070 Sum_probs=31.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+|||.|++|.+|..+++.+...|.+|+++++..
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~ 180 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSD 180 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999999999999999999999998887543
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.2 Score=47.74 Aligned_cols=35 Identities=31% Similarity=0.446 Sum_probs=32.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEe
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD 117 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~d 117 (479)
.+.||+|+|.|.+..+|+-++..|+++|+.|+++.
T Consensus 154 ~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~h 188 (285)
T PRK14191 154 EIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCH 188 (285)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEe
Confidence 56899999999999999999999999999998864
|
|
| >PF08643 DUF1776: Fungal family of unknown function (DUF1776); InterPro: IPR013952 This is a fungal protein of unknown function | Back alignment and domain information |
|---|
Probab=94.20 E-value=5.6 Score=38.30 Aligned_cols=167 Identities=16% Similarity=0.150 Sum_probs=90.1
Q ss_pred CcEEEEEcC-CchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGG-DGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGa-tG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
...|+|.|. +==+++.++..|-++||-|++........ +..+......+.....|..++
T Consensus 3 ~evVvI~Gs~~~PltR~la~DLeRRGFIV~v~~~~~ed~--------------------~~ve~e~~~dI~~L~ld~~~~ 62 (299)
T PF08643_consen 3 KEVVVIAGSPHDPLTRSLALDLERRGFIVYVTVSSAEDE--------------------KYVESEDRPDIRPLWLDDSDP 62 (299)
T ss_pred eeEEEEECCCCCccHHHHHHHHhhCCeEEEEEeCCHHHH--------------------HHHHhccCCCCCCcccCCCCC
Confidence 457899995 78999999999999999999876543321 111222234577777777665
Q ss_pred HHHHHHhhhc-----CC--------CEEEEcccccCc--------ccccccccccchhhhhhHHHHHHHHHHH----HHc
Q 011707 165 EFLSESFKSF-----EP--------DAVVHFGEQRSA--------PYSMIDRSRAVFTQHNNVIGTLNVLFAM----KEF 219 (479)
Q Consensus 165 ~~~~~~~~~~-----~~--------D~Vih~A~~~~~--------~~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~ 219 (479)
..+...+..+ .+ ....++.|+.-+ +...-.++.|...++.|+.-...+++.. +..
T Consensus 63 ~~~~~~l~~f~~~L~~p~~p~~~~~~h~l~L~svi~~Psl~yp~gPie~i~~s~~~~~ln~~ll~~~~~~q~lLPlL~~~ 142 (299)
T PF08643_consen 63 SSIHASLSRFASLLSRPHVPFPGAPPHHLQLKSVIFIPSLSYPTGPIETISPSSWADELNTRLLTPILTIQGLLPLLRSR 142 (299)
T ss_pred cchHHHHHHHHHHhcCCCCCCCCCCCceeEEEEEEEecCCCCCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4443333322 11 123333333211 1112344456666777776655544443 441
Q ss_pred C-CcceEEEee-cc-ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEee
Q 011707 220 R-QECHLVKLG-TM-GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLN 293 (479)
Q Consensus 220 g-~~~~~V~~S-S~-~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivR 293 (479)
. .+.++|.+. |. +-.+. | ....-.....+.+.+...+.+|. +++++.++
T Consensus 143 ~~~~~~iil~~Psi~ssl~~-----------------------P--fhspE~~~~~al~~~~~~LrrEl~~~~I~V~~i~ 197 (299)
T PF08643_consen 143 SNQKSKIILFNPSISSSLNP-----------------------P--FHSPESIVSSALSSFFTSLRRELRPHNIDVTQIK 197 (299)
T ss_pred cCCCceEEEEeCchhhccCC-----------------------C--ccCHHHHHHHHHHHHHHHHHHHhhhcCCceEEEE
Confidence 1 122555444 32 11111 1 12233344445555555555554 69999999
Q ss_pred cCee
Q 011707 294 QGVV 297 (479)
Q Consensus 294 p~~v 297 (479)
.|++
T Consensus 198 LG~l 201 (299)
T PF08643_consen 198 LGNL 201 (299)
T ss_pred eeee
Confidence 9986
|
One of the proteins P32792 from SWISSPROT has been localised to the mitochondria []. |
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.078 Score=46.10 Aligned_cols=34 Identities=35% Similarity=0.481 Sum_probs=31.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEe
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD 117 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~d 117 (479)
.+++++|+|.|| |-+|...++.|++.|++|++++
T Consensus 10 ~l~~~~vlVvGG-G~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 10 NLHNKVVVIIGG-GKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EcCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEc
Confidence 467999999998 9999999999999999999885
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.19 Score=47.94 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=32.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEe
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD 117 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~d 117 (479)
.+.||+|+|+|.+..+|+-|+..|+++|+.|++++
T Consensus 161 ~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~h 195 (287)
T PRK14176 161 DIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCH 195 (287)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEe
Confidence 56899999999999999999999999999999875
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.41 Score=47.38 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.+.+|||+|+ |.+|...++.+...|. +|+++++..
T Consensus 169 ~g~~VlV~G~-G~vG~~aiqlak~~G~~~Vi~~~~~~ 204 (343)
T PRK09880 169 QGKRVFVSGV-GPIGCLIVAAVKTLGAAEIVCADVSP 204 (343)
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCcEEEEEeCCH
Confidence 4789999986 9999999988888898 588887643
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 479 | ||||
| 1qrr_A | 394 | Crystal Structure Of Sqd1 Protein Complex With Nad | 0.0 | ||
| 1i24_A | 404 | High Resolution Crystal Structure Of The Wild-Type | 0.0 | ||
| 1i2b_A | 404 | Crystal Structure Of Mutant T145a Sqd1 Protein Comp | 0.0 | ||
| 1hzj_A | 348 | Human Udp-Galactose 4-Epimerase: Accommodation Of U | 2e-07 | ||
| 1i3k_A | 348 | Molecular Basis For Severe Epimerase-Deficiency Gal | 2e-07 | ||
| 4ef7_B | 337 | Udp-Xylose Synthase Length = 337 | 3e-07 | ||
| 1ek5_A | 348 | Structure Of Human Udp-Galactose 4-Epimerase In Com | 5e-07 | ||
| 2b69_A | 343 | Crystal Structure Of Human Udp-Glucoronic Acid Deca | 3e-06 | ||
| 1z45_A | 699 | Crystal Structure Of The Gal10 Fusion Protein Galac | 5e-06 | ||
| 1orr_A | 347 | Crystal Structure Of Cdp-tyvelose 2-epimerase Compl | 2e-05 | ||
| 1g1a_A | 361 | The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydra | 5e-05 | ||
| 2pk3_A | 321 | Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose | 3e-04 |
| >pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And Udp- Glucose Length = 394 | Back alignment and structure |
|
| >pdb|1I24|A Chain A, High Resolution Crystal Structure Of The Wild-Type Protein Sqd1, With Nad And Udp-Glucose Length = 404 | Back alignment and structure |
|
| >pdb|1I2B|A Chain A, Crystal Structure Of Mutant T145a Sqd1 Protein Complex With Nad And Udp-SulfoquinovoseUDP-Glucose Length = 404 | Back alignment and structure |
|
| >pdb|1HZJ|A Chain A, Human Udp-Galactose 4-Epimerase: Accommodation Of Udp-N- Acetylglucosamine Within The Active Site Length = 348 | Back alignment and structure |
|
| >pdb|1I3K|A Chain A, Molecular Basis For Severe Epimerase-Deficiency Galactosemia: X-Ray Structure Of The Human V94m- Substituted Udp-Galactose 4-Epimerase Length = 348 | Back alignment and structure |
|
| >pdb|1EK5|A Chain A, Structure Of Human Udp-Galactose 4-Epimerase In Complex With Nad+ Length = 348 | Back alignment and structure |
|
| >pdb|2B69|A Chain A, Crystal Structure Of Human Udp-Glucoronic Acid Decarboxylase Length = 343 | Back alignment and structure |
|
| >pdb|1Z45|A Chain A, Crystal Structure Of The Gal10 Fusion Protein Galactose MutarotaseUDP-Galactose 4-Epimerase From Saccharomyces Cerevisiae Complexed With Nad, Udp-Glucose, And Galactose Length = 699 | Back alignment and structure |
|
| >pdb|1ORR|A Chain A, Crystal Structure Of Cdp-tyvelose 2-epimerase Complexed With Nad And Cdp Length = 347 | Back alignment and structure |
|
| >pdb|1G1A|A Chain A, The Crystal Structure Of Dtdp-D-Glucose 4,6-Dehydratase (Rmlb)from Salmonella Enterica Serovar Typhimurium Length = 361 | Back alignment and structure |
|
| >pdb|2PK3|A Chain A, Crystal Structure Of A Gdp-4-Keto-6-Deoxy-D-Mannose Reductase Length = 321 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 479 | |||
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 0.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 2e-27 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 3e-27 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 4e-26 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 2e-25 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 2e-25 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 2e-24 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 7e-24 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 2e-22 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 2e-22 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 3e-22 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 1e-20 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 2e-20 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 8e-20 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 2e-19 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 4e-19 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 8e-18 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 1e-17 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 2e-17 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 2e-17 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 1e-16 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 2e-15 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 5e-15 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 5e-15 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 9e-15 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 1e-14 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 1e-14 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 1e-14 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 3e-14 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 2e-12 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 8e-12 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 1e-11 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 4e-09 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 5e-09 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-09 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 1e-08 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 2e-08 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 4e-08 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 4e-08 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 3e-07 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 1e-06 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 2e-06 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 8e-06 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 2e-05 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 1e-04 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 6e-04 |
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* Length = 404 | Back alignment and structure |
|---|
Score = 557 bits (1437), Expect = 0.0
Identities = 348/404 (86%), Positives = 377/404 (93%)
Query: 76 LHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTP 135
+ S + RVM+IGGDGYCGWATALHLS K YEV IVD+L+RRLFDHQLGL+SLTP
Sbjct: 1 MRGSHHHHHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTP 60
Query: 136 IASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDR 195
IASIHDR+ WK+LTGK+IELY+GDICDFEFL+ESFKSFEPD+VVHFGEQRSAPYSMIDR
Sbjct: 61 IASIHDRISRWKALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDR 120
Query: 196 SRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTD 255
SRAV+TQHNNVIGTLNVLFA+KEF +ECHLVKLGTMGEYGTPNIDIEEGYITI HNGRTD
Sbjct: 121 SRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTD 180
Query: 256 TLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRL 315
TLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGV+TDET MHEEL NRL
Sbjct: 181 TLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRL 240
Query: 316 DYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRV 375
DYD VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVE+AIANPA+ GEFRV
Sbjct: 241 DYDAVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRV 300
Query: 376 FNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPH 435
FNQFTEQFSVN+LA+LVTKAG KLGLDVK ++VPNPRVEAEEHYYNAKHTKL+ELGL+PH
Sbjct: 301 FNQFTEQFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPH 360
Query: 436 ILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTVAA 479
LSDSLLDSLLNFA+QFKDRVD+KQIMPSVSW+KIG K K++
Sbjct: 361 YLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSMTT 404
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} PDB: 3icp_A* 3aw9_A* Length = 312 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 2e-27
Identities = 76/387 (19%), Positives = 133/387 (34%), Gaps = 96/387 (24%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI--RRLFDHQLGLDSLTPIASIHDRLRC 145
R+++ GG G+ G L GYEV +VD+L RR ++
Sbjct: 2 RIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRR--------------EFVNP---- 43
Query: 146 WKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNN 205
+ EL++ D+ D+ + + + D V HF S + + + N
Sbjct: 44 -------SAELHVRDLKDYSWGAG----IKGDVVFHFAANPEVRLSTTEP---IVHFNEN 89
Query: 206 VIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLP----YPK 261
V+ T NVL ++ +V + YG D +P P
Sbjct: 90 VVATFNVLEWARQTGVR-TVVFASSSTVYGDA-----------------DVIPTPEEEPY 131
Query: 262 QASSFYHLSKVHDSHNIAFTCKAWGIRATDL---NQGVVYGVRTDETAMHEELCNRLDYD 318
+ S Y +K A + +G+R + N V G RL +
Sbjct: 132 KPISVYGAAKAAGEVMCATYARLFGVRCLAVRYAN---VVGP-------------RLRHG 175
Query: 319 GVFGTALNRFCVQA-AVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP-GEFRVF 376
++ F ++ + L V G G Q + YL +RD V+ A + F
Sbjct: 176 VIY-----DFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPFLAL 230
Query: 377 NQFTEQ-FSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKH-----TKLIE- 429
N V +A +V + LGL + VP + + K+ TKL++
Sbjct: 231 NVGNVDAVRVLDIAQIVAEV---LGLRPEIRLVP-STPDGRGWPGDVKYMTLAVTKLMKL 286
Query: 430 LGLQPHILSDSLLDSLLNFAIQFKDRV 456
G +P + + +++ A +
Sbjct: 287 TGWRPTM---TSAEAVKKTAEDLAKEL 310
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* Length = 377 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 63/357 (17%), Positives = 113/357 (31%), Gaps = 50/357 (14%)
Query: 58 HTVYATATPFTPTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD 117
H + ++ P S + +++ VM++GG G+ G SN +V
Sbjct: 5 HHHHHHSSGLVPRGSHMPVIMNASK-LANTNVMVVGGAGFVG-------SN------LVK 50
Query: 118 SLIRRLFDHQLGLDSLTP--IASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFE 175
L+ + +D+L ++ D + I D L+ E
Sbjct: 51 RLLELGVNQVHVVDNLLSAEKINVPDH---------PAVRFSETSITDDALLASLQD--E 99
Query: 176 PDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG 235
D V H S+ D + NN + TL + +K F++ +V
Sbjct: 100 YDYVFHLATYHGNQSSIHD---PLADHENNTLTTLKLYERLKHFKRLKKVVYSAAGCSIA 156
Query: 236 -TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQ 294
D + T + S Y +SK+ + K +
Sbjct: 157 EKTFDDAKATEETDIVS--------LHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARF 208
Query: 295 GVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIR 354
VYG A + V F +A G PL + G TR ++ +
Sbjct: 209 QNVYGPGEILGAGRWRGTPATVWRNVTP----TFIYKALKGMPLPLENGGVATRDFIFVE 264
Query: 355 DTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVKTISVPN 410
D + A PG V+N + ++ S+ LA + + G + + +P
Sbjct: 265 DVANGLIAC-AADGTPGG--VYNIASGKETSIADLATKINEI---TGNNTELDRLPK 315
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} Length = 311 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 4e-26
Identities = 59/356 (16%), Positives = 101/356 (28%), Gaps = 82/356 (23%)
Query: 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRC 145
+ ++ + GG G+ G + N G I+ I
Sbjct: 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSI------------------------- 36
Query: 146 WKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNN 205
K I Y + D+ + + DAVVH R + + + H+N
Sbjct: 37 ----GNKAINDYEYRVSDYTLEDLINQLNDVDAVVHLAATRGSQGKISE-------FHDN 85
Query: 206 VIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASS 265
I T N+ A E ++V T+ Y D
Sbjct: 86 EILTQNLYDACYENNIS-NIVYASTISAYS----DETSLPWNEKE---------LPLPDL 131
Query: 266 FYHLSKVHDSHNIAFTCKAWGIRATDL---NQGVVYGVRTDETAMHEELCNRLDYDGVFG 322
Y +SK+ H + G+ +L + +YG + +
Sbjct: 132 MYGVSKLACEHIGNIYSRKKGLCIKNLRFAH---LYG-------------FNEKNNYMIN 175
Query: 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-E 381
RF QA G LT++ R +L +D + V A+ FN + +
Sbjct: 176 ----RFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEK-VSG--TFNIGSGD 228
Query: 382 QFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHI 436
+ ++A + A G + E Y +K E L
Sbjct: 229 ALTNYEVANTINNA---FGNKDNLLVKNPNANEGIHSSY-MDSSKAKELLDFSTDY 280
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} Length = 313 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 2e-25
Identities = 67/392 (17%), Positives = 114/392 (29%), Gaps = 106/392 (27%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
+++ GG G+ G LS + E+ ++D+L
Sbjct: 2 SLIVVTGGAGFIGSHVVDKLS-ESNEIVVIDNLS-------------------------- 34
Query: 147 KSLTGK------NIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVF 200
+G L D+ + + V H +
Sbjct: 35 ---SGNEEFVNEAARLVKADLAADDIKDYLKG---AEEVWHIAANPDVRIGAENP---DE 85
Query: 201 TQHNNVIGTLNVLFAMKEFRQECHLVKL----GTMGEYGTPNIDIEEGYITINHNGRTDT 256
NNV+ T +L AM++ V T YG
Sbjct: 86 IYRNNVLATYRLLEAMRKAG-----VSRIVFTSTSTVYGEA-----------------KV 123
Query: 257 LP----YPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDL---NQGVVYGVRTDETAMHE 309
+P YP S Y SK+ I C + ++A N V G R+ +
Sbjct: 124 IPTPEDYPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFAN---VIGRRSTHGVI-- 178
Query: 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369
YD + N L + G G Q + Y+ I D V + +
Sbjct: 179 -------YDFIMKLKRNP--------EELEILGNGEQNKSYIYISDCVDAMLFGLRG--- 220
Query: 370 PGEFRVFNQFTEQ-FSVNQLAALVTKAGEKLGLDVKTISVPNPRVEA-EEHYYNAKHTKL 427
+FN +E V ++A +V E+LGL + R + KL
Sbjct: 221 DERVNIFNIGSEDQIKVKRIAEIV---CEELGLSPRFRFTGGDRGWKGDVPVMLLSIEKL 277
Query: 428 IELGLQPHILSDSLLDSLLNFAIQFKDRVDSK 459
LG +P + +++ + +D +
Sbjct: 278 KRLGWKPRY---NSEEAVRMAVRDLVEDLDEE 306
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* Length = 352 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 2e-25
Identities = 62/330 (18%), Positives = 113/330 (34%), Gaps = 54/330 (16%)
Query: 80 SNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASI 139
P++ K +I G G+ G L +V +D+ G ++
Sbjct: 21 KELPAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFAT-------GHQR-----NL 68
Query: 140 HDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAV 199
+ N + GDI + + + + D V+H S P S+ D +
Sbjct: 69 DEVRSLVSEKQWSNFKFIQGDIRNLDDCNNACAGV--DYVLHQAALGSVPRSIND---PI 123
Query: 200 FTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG-TPNIDIEEGYITINHNGRTDTLP 258
+ N+ G LN+L A ++ + + + YG P + E DT+
Sbjct: 124 TSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKVE-----------DTIG 171
Query: 259 YPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDL---NQGVVYGVRTDETAMHEELCNRL 315
P S Y ++K + + +G L N V+G R
Sbjct: 172 KPL---SPYAVTKYVNELYADVFSRCYGFSTIGLRYFN---VFGRRQ------------- 212
Query: 316 DYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRV 375
D +G + + ++ G + + G G +R + I +TVQ LA +V
Sbjct: 213 DPNGAYAAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLD-ARNQV 271
Query: 376 FN-QFTEQFSVNQLAALVTKAGEKLGLDVK 404
+N + S+NQL + + G+
Sbjct: 272 YNIAVGGRTSLNQLFFALRDGLAENGVSYH 301
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* Length = 311 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-24
Identities = 83/343 (24%), Positives = 128/343 (37%), Gaps = 91/343 (26%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RV++ GG G+ G L +G EVA++D+L
Sbjct: 2 RVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLA--------------------------- 34
Query: 148 SLTGK------NIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFT 201
TGK + + D+ D E + +F+ F P V H Q S S+ D V
Sbjct: 35 --TGKRENVPKGVPFFRVDLRDKEGVERAFREFRPTHVSHQAAQASVKVSVED---PVLD 89
Query: 202 QHNNVIGTLNVLFAMKEFRQECHLVKLGTMGE-YG-TPNID-IEEGYITINHNGRTDTLP 258
N++G LN+L A +++ E LV T G YG P + EE P
Sbjct: 90 FEVNLLGGLNLLEACRQYGVE-KLVFASTGGAIYGEVPEGERAEE-----------TWPP 137
Query: 259 YPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDL---NQGVVYGVRTDETAMHEELCNRL 315
PK S Y SK H ++ +++G++ L N VYG R D
Sbjct: 138 RPK---SPYAASKAAFEHYLSVYGQSYGLKWVSLRYGN---VYGPRQDPHG--------- 182
Query: 316 DYDGVFGTALNRFCVQAAVGHPLTVYGK-----GGQTRGYLDIRDTVQCVELAIANPAQP 370
GV + F + G P+T+Y + G R Y+ + D + LA+ +
Sbjct: 183 -EAGV----VAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSLE-- 235
Query: 371 GEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVKTISVPNPR 412
++N T E + ++ V +A G + P PR
Sbjct: 236 ---GIYNVGTGEGHTTREVLMAVAEA---AGKAPEVQPAP-PR 271
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* Length = 317 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 7e-24
Identities = 44/321 (13%), Positives = 101/321 (31%), Gaps = 65/321 (20%)
Query: 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS 148
+++ G G G +L+ K + ++ S I +
Sbjct: 2 ILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDTG---------------------- 39
Query: 149 LTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRA--VFTQHNNV 206
I+ D+ + + + + + + DA+ H SA + N+
Sbjct: 40 ----GIKFITLDVSNRDEIDRAVEKYSIDAIFHLAGILSA------KGEKDPALAYKVNM 89
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYG--TPNIDIEEGYITINHNGRTDTLPYPKQAS 264
GT N+L A K+ R E +V T+G +G TP + T+ P
Sbjct: 90 NGTYNILEAAKQHRVE-KVVIPSTIGVFGPETPKNKVPS-----------ITITRP---R 134
Query: 265 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324
+ + ++K+ + + +G+ L + + +
Sbjct: 135 TMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKA-------------EPTAGTTDY 181
Query: 325 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQC-VELAIANPAQPGEFRVFNQFTEQF 383
A Y + + + D ++ V+L A+ + +N F
Sbjct: 182 AVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRDKLVLRNGYNVTAYTF 241
Query: 384 SVNQLAALVTKAGEKLGLDVK 404
+ ++L + + + + ++ K
Sbjct: 242 TPSELYSKIKERIPEFEIEYK 262
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} Length = 333 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 58/341 (17%), Positives = 96/341 (28%), Gaps = 96/341 (28%)
Query: 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL----IRRLFDHQLGLDSLTPIASI 139
S K+V I G G G A L +G +V +D+ L DH
Sbjct: 19 SHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRREHLKDH------------- 65
Query: 140 HDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAV 199
N+ G I D +++ +PDAVVH P +
Sbjct: 66 ------------PNLTFVEGSIADHALVNQLIGDLQPDAVVHTAASYKDPDDWYN----- 108
Query: 200 FTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPY 259
N +G NV+ A K+ V T YG + P
Sbjct: 109 -DTLTNCVGGSNVVQAAKKNNVG-RFVYFQTALCYG----------------VKPIQQPV 150
Query: 260 -----PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDL---NQGVVYGVRTDETAMHEEL 311
A+S Y +SK + + G+ N V G R + +
Sbjct: 151 RLDHPRNPANSSYAISKSANED----YLEYSGLDFVTFRLAN---VVGPR-NVSGP---- 198
Query: 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPG 371
L F + + G V R ++ ++D + A+
Sbjct: 199 -------------LPIFFQRLSEGKKCFV---TKARRDFVFVKDLARATVRAVDGVG--- 239
Query: 372 EFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVKTISVPNP 411
++ + ++ +L V +A + L
Sbjct: 240 -HGAYHFSSGTDVAIKELYDAVVEA---MALPSYPEPEIRE 276
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* Length = 330 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 2e-22
Identities = 65/350 (18%), Positives = 107/350 (30%), Gaps = 88/350 (25%)
Query: 74 SGLHQSSNDPSKAKR-----VMIIGGDGYCGWATALHLSNKGYEVAIVDSLI--RRLFDH 126
S H + R ++I GG G G H +G+E+ ++D+ +R
Sbjct: 3 SSHHHHHHSSGLVPRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKR---- 58
Query: 127 QLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQR 186
+ L P+A + + G + D L +F SF+P VVH
Sbjct: 59 ----EVLPPVA---------------GLSVIEGSVTDAGLLERAFDSFKPTHVVHSAAAY 99
Query: 187 SAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYI 246
P + NV G++NV A + + L+ T YG P I
Sbjct: 100 KDPDDWAE------DAATNVQGSINVAKAASKAGVK-RLLNFQTALCYGRP----ATVPI 148
Query: 247 TINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDL---NQGVVYGVRTD 303
I+ P + Y +SK + L N V G R
Sbjct: 149 PIDS---------PTAPFTSYGISKTAGEA----FLMMSDVPVVSLRLAN---VTGPR-- 190
Query: 304 ETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELA 363
G + F + G + R +LD+ D + +L+
Sbjct: 191 ---------------LAIG-PIPTFYKRLKAGQK--CFC-SDTVRDFLDMSDFLAIADLS 231
Query: 364 IANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVKTISVPNPR 412
+ VFN T E S+ ++ +V +G +
Sbjct: 232 LQE---GRPTGVFNVSTGEGHSIKEVFDVVLDY---VGATLAEPVPVVAP 275
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* Length = 351 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 3e-22
Identities = 57/318 (17%), Positives = 108/318 (33%), Gaps = 58/318 (18%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTP--IASIHDR 142
K +I G G+ G L V +GLD+ + ++ +
Sbjct: 24 SPKTWLITGVAGFIGSNLLEKLLKLNQVV--------------IGLDNFSTGHQYNLDEV 69
Query: 143 LRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQ 202
+ GDI D + K D V+H S P S++D + T
Sbjct: 70 KTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV--DHVLHQAALGSVPRSIVD---PITTN 124
Query: 203 HNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG-TPNIDIEEGYITINHNGRTDTLPYPK 261
N+ G LN+L A K + + + YG P + E + + P
Sbjct: 125 ATNITGFLNILHAAKNAQVQ-SFTYAASSSTYGDHPALPKVE-----------ENIGNPL 172
Query: 262 QASSFYHLSKVHDSHNIAFTCKAWGIRATDL---NQGVVYGVRTDETAMHEELCNRLDYD 318
S Y ++K + + +G + L N V+G R D +
Sbjct: 173 ---SPYAVTKYVNEIYAQVYARTYGFKTIGLRYFN---VFGRRQDP-------------N 213
Query: 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFN- 377
G + + ++ G + + G G +R + I + +Q L+ A + ++N
Sbjct: 214 GAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILS-ALAKDSAKDNIYNV 272
Query: 378 QFTEQFSVNQLAALVTKA 395
++ ++N+L+ +
Sbjct: 273 AVGDRTTLNELSGYIYDE 290
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} Length = 267 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 1e-20
Identities = 46/270 (17%), Positives = 77/270 (28%), Gaps = 54/270 (20%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
R+++ G G G A HL +EV + D I +
Sbjct: 3 NRLLVTGAAGGVGSAIRPHLGTLAHEVRLSD------------------IVDLGAA---- 40
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
+ E+ D+ D + + + K D ++H G S D N+
Sbjct: 41 ----EAHEEIVACDLADAQAVHDLVKDC--DGIIHLGGV-SVERPWND------ILQANI 87
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSF 266
IG N+ A + + +V + G I+ P++ S
Sbjct: 88 IGAYNLYEAARNLGKP-RIVFASSNHTIG-----YYPRTTRIDTE-------VPRRPDSL 134
Query: 267 YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326
Y LSK + + I ++ G + D M L L
Sbjct: 135 YGLSKCFGEDLASLYYHKFDIETLNIRIGSCFPKPKDARMMATWLSVD------DFMRLM 188
Query: 327 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDT 356
+ A VYG T + D +
Sbjct: 189 KRAFVAPKLGCTVVYGASANTESWWDNDKS 218
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* Length = 267 | Back alignment and structure |
|---|
Score = 89.7 bits (223), Expect = 2e-20
Identities = 44/272 (16%), Positives = 76/272 (27%), Gaps = 58/272 (21%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
KR+++ G G G L+ + + D L L P
Sbjct: 4 KRLLVTGAAGQLGRVMRERLAPMAEILRLAD------------LSPLDPA---------- 41
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
G N E D+ D ++ D +VH S+ + N+
Sbjct: 42 ----GPNEECVQCDLADANAVNAMVA--GCDGIVHL-----GGISVEKPFEQIL--QGNI 88
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLP--YPKQAS 264
IG N+ A + Q +V + G + +T+ L P +
Sbjct: 89 IGLYNLYEAARAHGQP-RIVFASSNHTIG--------------YYPQTERLGPDVPARPD 133
Query: 265 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324
Y +SK + +G + G + + L +D +
Sbjct: 134 GLYGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNN----YRMLSTWFSHD--DFVS 187
Query: 325 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDT 356
L +A V V+G G+ D
Sbjct: 188 LIEAVFRAPVLGCPVVWGASANDAGWWDNSHL 219
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* Length = 348 | Back alignment and structure |
|---|
Score = 89.5 bits (223), Expect = 8e-20
Identities = 40/143 (27%), Positives = 58/143 (40%), Gaps = 31/143 (21%)
Query: 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRC 145
A++V++ GG GY G T L L GY ++D+ +SL R+
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGGSLPESL-------RRV-- 52
Query: 146 WKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHF------GEQRSAP---YSMIDRS 196
+ LTG+++E DI D L FK + AV+HF GE P Y
Sbjct: 53 -QELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLDYY------ 105
Query: 197 RAVFTQHNNVIGTLNVLFAMKEF 219
N+ GT+ +L MK
Sbjct: 106 ------RVNLTGTIQLLEIMKAH 122
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} Length = 321 | Back alignment and structure |
|---|
Score = 88.4 bits (220), Expect = 2e-19
Identities = 62/327 (18%), Positives = 87/327 (26%), Gaps = 94/327 (28%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
R++I GG G+ G A L G EV ++D L + +
Sbjct: 8 HRILITGGAGFIGGHLARALVASGEEVTVLDDL---RVPPMIPPEGT------------G 52
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
K L +EL D+ D V H +S P S + +NV
Sbjct: 53 KFLEKPVLELEERDLSDV------------RLVYHLASHKSVPRSFKQ---PLDY-LDNV 96
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPY----PKQ 262
++L +V T YG DTLP P
Sbjct: 97 DSGRHLLALCTSVGVP-KVVVGSTCEVYGQA-----------------DTLPTPEDSPLS 138
Query: 263 ASSFYHLSKV---------HDSHNIAFTCKAWGIR-ATDLNQGVVYGVRTDETAMHEELC 312
S Y SKV + R VYG
Sbjct: 139 PRSPYAASKVGLEMVAGAHQRASVAPEVGIV---RFFN------VYGP------------ 177
Query: 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGE 372
D + C + L V G G Q R + I D V + P
Sbjct: 178 -GERPDALVPR----LCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLP--- 229
Query: 373 FRVFNQFT-EQFSVNQLAALVTKAGEK 398
V N + + SVN + ++
Sbjct: 230 -SVVNFGSGQSLSVNDVIRILQATSPA 255
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} Length = 312 | Back alignment and structure |
|---|
Score = 86.9 bits (216), Expect = 4e-19
Identities = 44/320 (13%), Positives = 92/320 (28%), Gaps = 56/320 (17%)
Query: 87 KRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRC 145
+++IIG G G L G E ++ S IR+L +
Sbjct: 3 PKILIIGACGQIGTELTQKLRKLYGTEN-VIASDIRKLNTDVV----------------- 44
Query: 146 WKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNN 205
+ + + DF + + + + SA F N
Sbjct: 45 ------NSGPFEVVNALDFNQIEHLVEVHKITDIYLMAALLSATAEK----NPAFAWDLN 94
Query: 206 VIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASS 265
+ +VL K + + + ++ +G P E N T+ P S+
Sbjct: 95 MNSLFHVLNLAKAKKIK-KIFWPSSIAVFG-PTTPKE--------NTPQYTIMEP---ST 141
Query: 266 FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325
Y +SK + +G+ + + T DY A+
Sbjct: 142 VYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPG------GGTTDY------AV 189
Query: 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFR-VFNQFTEQFS 384
+ F +A + + + D + + P + + +N F+
Sbjct: 190 DIF-YKAIADKKYECFLSSETKMPMMYMDDAIDATINIMKAPVEKIKIHSSYNLAAMSFT 248
Query: 385 VNQLAALVTKAGEKLGLDVK 404
++A + K + + +
Sbjct: 249 PTEIANEIKKHIPEFTITYE 268
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 Length = 347 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 8e-18
Identities = 64/312 (20%), Positives = 113/312 (36%), Gaps = 69/312 (22%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLG-LDSLTPIASIHDRLRC 145
+++I GG G+ G A ++G ++ + D+L R+ G D+L ++S+
Sbjct: 2 AKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRK------GATDNLHWLSSL------ 49
Query: 146 WKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRS---RAVFTQ 202
N E GDI + ++ + PD+ H Q + S + +
Sbjct: 50 ------GNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQ-----VAMTTSIDNPCMDFE 98
Query: 203 HNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT-PNIDIEEGYITINHNGRTD----TL 257
NV GTLN+L A++++ C+++ T YG E + + +
Sbjct: 99 I-NVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDEST 157
Query: 258 PYPKQASSFYHLSK------VHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEE- 310
S Y SK + D I +G+ +YG R A +++
Sbjct: 158 QL--DFHSPYGCSKGAADQYMLDYARI------FGLNTVVFRHSSMYGGRQF--ATYDQG 207
Query: 311 ----LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN 366
C + A+ ++ + P T+ G G Q R L D + A+AN
Sbjct: 208 WVGWFCQK---------AVE---IKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALAN 255
Query: 367 P-AQPGEFRVFN 377
G FN
Sbjct: 256 VSKIRGN--AFN 265
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} Length = 342 | Back alignment and structure |
|---|
Score = 83.2 bits (206), Expect = 1e-17
Identities = 39/326 (11%), Positives = 86/326 (26%), Gaps = 54/326 (16%)
Query: 77 HQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPI 136
N + + IIG G G L G L + + +D P
Sbjct: 5 SGRENLYFQGMHIAIIGAAGMVGRKLTQRLVKDGS-------LGGKPVEKFTLIDVFQPE 57
Query: 137 ASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRS 196
A ++ D+ + ++ PD + H S + +D
Sbjct: 58 APAGFSGA---------VDARAADLSAPGEAEKLVEA-RPDVIFHLAAIVSGE-AELDFD 106
Query: 197 RAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKL---GTMGEYGTP-NIDIEEGYITINHN 251
+ N+ GT + A++ ++ + ++ ++ +G P I +
Sbjct: 107 KGY---RINLDGTRYLFDAIRIANGKDGYKPRVVFTSSIAVFGAPLPYPIPD-------- 155
Query: 252 GRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEEL 311
+ P + Y K ++ + + + A
Sbjct: 156 ---EFHTTP---LTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKPNA----- 204
Query: 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CVELAIANPAQP 370
G + + VG + + R V + A+ + +
Sbjct: 205 ----AASGF----FSNILREPLVGQEAVLPVPESIRHWHASPRSAVGFLIHGAMIDVEKV 256
Query: 371 GEFRVFNQFTEQFSVNQLAALVTKAG 396
G R + +V + + K
Sbjct: 257 GPRRNLSMPGLSATVGEQIEALRKVA 282
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 Length = 699 | Back alignment and structure |
|---|
Score = 84.4 bits (209), Expect = 2e-17
Identities = 41/153 (26%), Positives = 67/153 (43%), Gaps = 37/153 (24%)
Query: 76 LHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTP 135
+ S +K V++ GG GY G T + L GY+ + D+L
Sbjct: 1 MTAQLQSESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSN-------------- 46
Query: 136 IASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHF------GEQRSAP 189
S +D + + LT +I Y D+CD + L + FK ++ D+V+HF GE P
Sbjct: 47 --STYDSVARLEVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGESTQIP 104
Query: 190 ---YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF 219
Y HNN++GT+ +L M+++
Sbjct: 105 LRYY------------HNNILGTVVLLELMQQY 125
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} Length = 341 | Back alignment and structure |
|---|
Score = 82.1 bits (204), Expect = 2e-17
Identities = 37/152 (24%), Positives = 56/152 (36%), Gaps = 51/152 (33%)
Query: 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL-------IRRLFDHQLGLDSLTPI 136
S +++ GG GY G TA+ L GY+V I D+L I R+
Sbjct: 3 STKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKREAIARI------------- 49
Query: 137 ASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHF------GEQRSAP- 189
+ +TGK + D+ D L+ F + A +HF GE + P
Sbjct: 50 ----------EKITGKTPAFHETDVSDERALARIFDAHPITAAIHFAALKAVGESVAKPI 99
Query: 190 --YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF 219
Y NN+ L++L M+E
Sbjct: 100 EYY------------RNNLDSLLSLLRVMRER 119
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* Length = 338 | Back alignment and structure |
|---|
Score = 79.8 bits (198), Expect = 1e-16
Identities = 37/148 (25%), Positives = 55/148 (37%), Gaps = 51/148 (34%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSL-------IRRLFDHQLGLDSLTPIASIH 140
RV++ GG GY G T + L G++V I+D+L + +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVI----------------- 44
Query: 141 DRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHF------GEQRSAP---YS 191
+ L GK+ GDI + ++E D V+HF GE P Y
Sbjct: 45 ------ERLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQKPLEYY- 97
Query: 192 MIDRSRAVFTQHNNVIGTLNVLFAMKEF 219
NNV GTL ++ AM+
Sbjct: 98 -----------DNNVNGTLRLISAMRAA 114
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* Length = 397 | Back alignment and structure |
|---|
Score = 77.3 bits (191), Expect = 2e-15
Identities = 38/143 (26%), Positives = 52/143 (36%), Gaps = 23/143 (16%)
Query: 88 RVMIIGGDGYCGWATALHL-SNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
RV++ GG GY G L + + V IVDSL+ +
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEP-DAVVHF------GEQRSAP---YSMIDRS 196
+ L +GD+ + +FL+ F P DAVVH GE P Y
Sbjct: 64 PPWADRYAALEVGDVRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDPLKYY------ 117
Query: 197 RAVFTQHNNVIGTLNVLFAMKEF 219
NNV+G L +L AM
Sbjct: 118 ------DNNVVGILRLLQAMLLH 134
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} Length = 362 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 5e-15
Identities = 56/340 (16%), Positives = 108/340 (31%), Gaps = 76/340 (22%)
Query: 85 KAKRVMIIGGDGYCGWATALHL--SNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDR 142
+ + ++I GG G+ G A H ++ +V ++D + + + +
Sbjct: 9 ENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRS---NTLFSNNRPSSLGH---- 61
Query: 143 LRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQ 202
+K+L G E+ DI + L + D + H +M++
Sbjct: 62 ---FKNLIGFKGEVIAADINNPLDL-RRLEKLHFDYLFHQAAVSD--TTMLN---QELVM 112
Query: 203 HNNVIGTLNVLFAMKEFRQECHLVKL------GTMGEYGTPNIDIEEGYITINHNGRTDT 256
N LN+L + + K+ G YG
Sbjct: 113 KTNYQAFLNLLEIARSKK-----AKVIYASSAGV---YGNTKAPNVV-----------GK 153
Query: 257 LPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDL---NQGVVYGVRTDETAMHEELCN 313
P+ + Y SK + + L N VYG R
Sbjct: 154 NESPE---NVYGFSK-LCMDEFVLS-HSNDNVQVGLRYFN---VYGPRE----------- 194
Query: 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEF 373
Y + + + + A + ++ G Q R ++ I D +Q A + +
Sbjct: 195 --FYKEKTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKA----MKAQKS 248
Query: 374 RVFNQFT-EQFSVNQLAALVTKAGEKLGLDVKTISVPNPR 412
V+N + S N++ +++ + LG D K + NP
Sbjct: 249 GVYNVGYSQARSYNEIVSILKEH---LG-DFKVTYIKNPY 284
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 Length = 310 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 5e-15
Identities = 59/354 (16%), Positives = 97/354 (27%), Gaps = 79/354 (22%)
Query: 90 MII--GGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
MII GG G+ G L++KG ++ +VD+L + +
Sbjct: 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD---GTK------------------F 39
Query: 147 KSLTGKNIELYI--GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHN 204
+L NI Y+ D E F + +A+ H G S + N
Sbjct: 40 VNLVDLNIADYMDKEDFLIQIMAGEEFG--DVEAIFHEGACSSTTEWDGK-----YMMDN 92
Query: 205 NVIGTLNVLFAMKEFRQECHLVKL---GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPK 261
N + +L E + + YG +I + P
Sbjct: 93 NYQYSKELLHYCLERE-----IPFLYASSAATYGGR----TSDFIESREYEK------PL 137
Query: 262 QASSFYHLSKVHDSHNIAFTCKAWGIRATDL---NQGVVYGVRTDETAMHEELCNRLDYD 318
+ Y SK + + N VYG R H+
Sbjct: 138 ---NVYGYSKFLFDEYVRQILPEANSQIVGFRYFN---VYGPREG----HKG-----SMA 182
Query: 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQ 378
V + P G R ++ + D + N +FN
Sbjct: 183 SVAFHLNTQL---NNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVS----GIFNL 235
Query: 379 FT-EQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELG 431
T S +A +K ++ I P+ + + A T L G
Sbjct: 236 GTGRAESFQAVADATLAYHKK--GQIEYIPFPDKLKGRYQAFTQADLTNLRAAG 287
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} Length = 372 | Back alignment and structure |
|---|
Score = 74.8 bits (184), Expect = 9e-15
Identities = 50/352 (14%), Positives = 96/352 (27%), Gaps = 73/352 (20%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL----IRRLFDHQLGLDSLTPIASIH 140
KAK+V+I+G +G+ G + + + + L H
Sbjct: 23 KAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGDLVKH-------------- 68
Query: 141 DRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMID-RSRAV 199
+ + + GDI + E + D ++ A + + +
Sbjct: 69 -----------ERMHFFEGDITINKEWVEYHVK-KCDVILPL----VAIATPATYVKQPL 112
Query: 200 FTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIE----EGYITINHNGRTD 255
+ L ++ + ++ HLV T YG + N
Sbjct: 113 RVFELDFEANLPIVRSAVKYG--KHLVFPSTSEVYGMCADEQFDPDASALTYGPIN---- 166
Query: 256 TLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVV-----YGVRTDETAMHEE 310
K Y SK I WG LN + G +
Sbjct: 167 -----KPRWI-YACSKQLMDRVI------WGYGMEGLNFTLFRPFNWIGPG-----LDSI 209
Query: 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP 370
+ + +F G +++ G Q R + + D + + I N
Sbjct: 210 YTPKEGS----SRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNGV 265
Query: 371 GEFRVFN--QFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYY 420
+++N FSV +LA + + + + YY
Sbjct: 266 ATGKIYNIGNPNNNFSVRELANKMLELAAEFPEYADSAKRVKLVETTSGAYY 317
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* Length = 357 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 1e-14
Identities = 56/366 (15%), Positives = 100/366 (27%), Gaps = 77/366 (21%)
Query: 76 LHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLT 134
L + + +++ GG G+ G L++KG ++ +VD+L +
Sbjct: 36 LGTGGGSGIEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKD---GTK------- 85
Query: 135 PIASIHDRLRCWKSLTGKNIELYI--GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSM 192
+ +L NI Y+ D E F + +A+ H G S
Sbjct: 86 -----------FVNLVDLNIADYMDKEDFLIQIMAGEEFG--DVEAIFHEGACSSTTEWD 132
Query: 193 IDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKL---GTMGEYGTPNIDIEEGYITIN 249
+ NN + +L E + + YG +I
Sbjct: 133 GK-----YMMDNNYQYSKELLHYCLERE-----IPFLYASSAATYGGR----TSDFIESR 178
Query: 250 HNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDL---NQGVVYGVRTDETA 306
+ P + + SK + + N VYG R
Sbjct: 179 EYEK------PL---NVFGYSKFLFDEYVRQILPEANSQIVGFRYFN---VYGPREG--- 223
Query: 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN 366
H+ V + P G R ++ + D + N
Sbjct: 224 -HKG-----SMASVAFHLNTQL---NNGESPKLFEGSENFKRDFVYVGDVADVNLWFLEN 274
Query: 367 PAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHT 425
+FN T S +A +K ++ I P+ + + A T
Sbjct: 275 GVS----GIFNLGTGRAESFQAVADATLAYHKK--GQIEYIPFPDKLKGRYQAFTQADLT 328
Query: 426 KLIELG 431
L G
Sbjct: 329 NLRAAG 334
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} Length = 330 | Back alignment and structure |
|---|
Score = 74.0 bits (183), Expect = 1e-14
Identities = 36/142 (25%), Positives = 51/142 (35%), Gaps = 44/142 (30%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
++I GG GY G L ++G V +VD+L G
Sbjct: 2 NSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQT-------G----------------H 38
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHF------GEQRSAP---YSMIDRSR 197
+ + + Y GD+ D FL + F +AV+HF G P Y
Sbjct: 39 EDAITEGAKFYNGDLRDKAFLRDVFTQENIEAVMHFAADSLVGVSMEKPLQYY------- 91
Query: 198 AVFTQHNNVIGTLNVLFAMKEF 219
+NNV G L +L M EF
Sbjct: 92 -----NNNVYGALCLLEVMDEF 108
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* Length = 343 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 1e-14
Identities = 73/353 (20%), Positives = 125/353 (35%), Gaps = 79/353 (22%)
Query: 69 PTQSRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL-------IR 121
+ R L+ + KR++I GG G+ G L G+EV +VD+ +
Sbjct: 10 HSSGRENLYFQGHMEKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVE 69
Query: 122 RLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVH 181
H +N EL D+ + ++ E D + H
Sbjct: 70 HWIGH-------------------------ENFELINHDVVEPLYI-------EVDQIYH 97
Query: 182 FGEQRSAPYSMID-RSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNID 240
++P S + + T N IGTLN+L K R L+ T YG P +
Sbjct: 98 L----ASPASPPNYMYNPIKTLKTNTIGTLNMLGLAK--RVGARLLLASTSEVYGDPEVH 151
Query: 241 --IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVY 298
E+ + +N G K+ + + + +R + +
Sbjct: 152 PQSEDYWGHVNPIGPRACYDEGKRVAETMCYA-YMKQEGV-------EVRVARIFN--TF 201
Query: 299 GVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ 358
G R MH ++ G ++ F +QA G PLTVYG G QTR + + D V
Sbjct: 202 GPR-----MH------MND----GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVN 246
Query: 359 CVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNP 411
+ +A+ N + N E+ ++ + A L+ +G + +
Sbjct: 247 GL-VALMNSNVSSPVNLGN--PEEHTILEFAQLIK---NLVGSGSEIQFLSEA 293
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A Length = 345 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 3e-14
Identities = 56/356 (15%), Positives = 105/356 (29%), Gaps = 87/356 (24%)
Query: 88 RVMIIGGDGYCGWATALHLSNK-----GYEVAIVDSL---IRRLFDHQLGLDSLTPIASI 139
RV+I+G +G+ G HL+ + YEV +D I R +H
Sbjct: 2 RVLILGVNGFIG----NHLTERLLREDHYEVYGLDIGSDAISRFLNH------------- 44
Query: 140 HDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMID-RSRA 198
+ GDI E + D V+ A + I+
Sbjct: 45 ------------PHFHFVEGDISIHSEWIEYHVK-KCDVVLPL----VAIATPIEYTRNP 87
Query: 199 VFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDI-EEGYITINHNGRTDTL 257
+ + L ++ ++R ++ T YG + +E + +
Sbjct: 88 LRVFELDFEENLRIIRYCVKYR--KRIIFPSTSEVYGMCSDKYFDEDHSNLIVG------ 139
Query: 258 PYPKQASSFYHLSK------VHDSHNIAFTCKAWGIRATDLNQGVV-----YGVRTDETA 306
P K Y +SK + L + G R
Sbjct: 140 PVNKPRWI-YSVSKQLLDRVIWAYG-----------EKEGLQFTLFRPFNWMGPR----- 182
Query: 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN 366
+ R+ A+ + + G P+ + G Q R + DIRD ++ + I N
Sbjct: 183 LDNLNAARIGS----SRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIEN 238
Query: 367 PAQPGEFRVFN--QFTEQFSVNQLAALVTK-AGEKLGLDVKTISVPNPRVEAEEHY 419
+ + N + S+ +L ++ + VE+ +Y
Sbjct: 239 AGNRCDGEIINIGNPENEASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYY 294
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* Length = 357 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 2e-12
Identities = 54/220 (24%), Positives = 80/220 (36%), Gaps = 34/220 (15%)
Query: 85 KAKRVMIIGGDGYCG-WATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIA--SIHD 141
+ KRV + G G+ G W + L L G V G SLT S+ +
Sbjct: 8 QGKRVFVTGHTGFKGGWLS-LWLQTMGATV--------------KGY-SLTAPTVPSLFE 51
Query: 142 RLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRS--RAV 199
R ++ IGDI D L ES + F+P+ V H Q ++ S V
Sbjct: 52 TARV-----ADGMQSEIGDIRDQNKLLESIREFQPEIVFHMAAQ-----PLVRLSYSEPV 101
Query: 200 FTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPY 259
T NV+GT+ +L A++ +V + + Y N + GY G D
Sbjct: 102 ETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYD--NKEWIWGYRENEAMGGYDPYSN 159
Query: 260 PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYG 299
K + S + N A + G + G V G
Sbjct: 160 SKGCAELVTSSYRNSFFNPANYGQH-GTAVATVRAGNVIG 198
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* Length = 379 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 8e-12
Identities = 52/343 (15%), Positives = 106/343 (30%), Gaps = 80/343 (23%)
Query: 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDR 142
PS+ ++ I G G+ A L ++G+ V D +
Sbjct: 26 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMF------------- 72
Query: 143 LRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMID--RSRAVF 200
E ++ D+ E + + D V + +A + +S
Sbjct: 73 ----------CDEFHLVDLRVMENCLKVTE--GVDHVFNL----AADMGGMGFIQSNHSV 116
Query: 201 TQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGYITINHNGRTDTLPY 259
+NN + + N++ A + + + Y + + + +
Sbjct: 117 IMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETTNVSL------KESDA-W 168
Query: 260 PKQASSFYHLSKVHDSHNIAFT---CKAWGIRATDLNQGVV-----YGVRTDETAMHEEL 311
P + + L K+ T CK + + + + YG
Sbjct: 169 PAEPQDAFGLEKL-------ATEELCKHYN-KDFGIECRIGRFHNIYGPF-----GT--- 212
Query: 312 CNRLDYDGVFGTALNRFCVQAAVG-HPLTVYGKGGQTRGYLDIRDTVQ-CVELAIANPAQ 369
+ G A FC +A ++G G QTR + I + V+ + L ++ +
Sbjct: 213 -----WKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFRE 267
Query: 370 PGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVKTISVPNP 411
P N + E S+N++A +V + +P P
Sbjct: 268 P-----VNIGSDEMVSMNEMAEMVLSF---EEKKLPIHHIPGP 302
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} Length = 342 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 1e-11
Identities = 41/297 (13%), Positives = 74/297 (24%), Gaps = 66/297 (22%)
Query: 78 QSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIA 137
Q + P + ++G G G A + G+++ + + R
Sbjct: 5 QPLSRPGAHVKYAVLGATGLLGHHAARAIRAAGHDLVL---IHRPSSQI----------- 50
Query: 138 SIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSR 197
+ L E + ++ D L + + D V+ Y R
Sbjct: 51 ---------QRLAYLEPECRVAEMLDHAGLERALR--GLDGVIFSA----GYYPSRPRRW 95
Query: 198 AVFTQHNNVIGTLNVLFAMKEF--RQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTD 255
+ + T A + + ++ M + E
Sbjct: 96 QEEVA-SALGQTNPFYAACLQARVPRILYVGSAYAMPR-HPQGLPGHE----------GL 143
Query: 256 TLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRL 315
S Y L K A G+ G+V G
Sbjct: 144 FYDSLPSGKSSYVLCK-WALDEQAREQARNGLPVVIGIPGMVLGEL-------------- 188
Query: 316 DYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGE 372
D G R G +T Y G R +D + + + +A + GE
Sbjct: 189 DIGPTTG----RVITAIGNGE-MTHYVAGQ--RNVIDAAEAGRGLLMA-LERGRIGE 237
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} Length = 346 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 4e-09
Identities = 34/148 (22%), Positives = 55/148 (37%), Gaps = 42/148 (28%)
Query: 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLT------PIA 137
S A +++ GG G+ G ++ I++ D+LT +
Sbjct: 22 SNAMNILVTGGAGFIGSNFVHYMLQSYETYKIIN------------FDALTYSGNLNNVK 69
Query: 138 SIHDRLRCWKSLTGKNIELYI---GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMID 194
SI D Y G+I + E L K + +V+F A S +D
Sbjct: 70 SIQDHPN------------YYFVKGEIQNGELLEHVIKERDVQVIVNF-----AAESHVD 112
Query: 195 RS---RAVFTQHNNVIGTLNVLFAMKEF 219
RS F NVIGT+ +L +K++
Sbjct: 113 RSIENPIPFYD-TNVIGTVTLLELVKKY 139
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* Length = 348 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 5e-09
Identities = 47/195 (24%), Positives = 77/195 (39%), Gaps = 38/195 (19%)
Query: 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLT---PIASIH 140
S+ K +++ GG G+ G ++ N +V + LD LT A++
Sbjct: 2 SQFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTV------------LDKLTYAGNKANL- 48
Query: 141 DRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRS---R 197
+++ G +EL +GDI D E + + + DA+VH+ A S D S
Sbjct: 49 ------EAILGDRVELVVGDIADAELVDKLAA--KADAIVHY-----AAESHNDNSLNDP 95
Query: 198 AVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGR-TDT 256
+ F N IGT +L A +++ H V T YG + + + T
Sbjct: 96 SPFIH-TNFIGTYTLLEAARKYDIRFHHVS--TDEVYGDLPLREDLPGHGEGPGEKFTAE 152
Query: 257 LPYPKQASSFYHLSK 271
Y SS Y +K
Sbjct: 153 TNY--NPSSPYSSTK 165
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 7e-09
Identities = 57/426 (13%), Positives = 121/426 (28%), Gaps = 149/426 (34%)
Query: 37 VKTSKSPIQTVILSAQRSQRCHTVYATATPFTPTQSRS----GLHQSSND-PSKAKRVM- 90
+ T + + +A + ++ + TP + +S L D P +
Sbjct: 270 LTTRFKQVTDFLSAATTTHI--SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 91 ----IIGG---DGYCGWATALHLSNKGYEVAIVDSL-------IRRLFDHQLGL---DSL 133
II DG W H++ I SL R++FD +L + +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD-RLSVFPPSAH 386
Query: 134 TPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFE---PDAVVHFGEQRSAPY 190
P + + W + ++ + + + + + + K P + + Y
Sbjct: 387 IPTILL-SLI--WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEY 443
Query: 191 SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINH 250
++ H +++ N+ K F + + P +D Y +H
Sbjct: 444 AL----------HRSIVDHYNIP---KTFDSD----------DLIPPYLD---QYF-YSH 476
Query: 251 NGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEE 310
G +HL + + +
Sbjct: 477 IG--------------HHLKNIE---------------------------HPERMTLFRM 495
Query: 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP 370
+ LD+ RF ++ + H T + G I +T+Q
Sbjct: 496 V--FLDF---------RF-LEQKIRHDSTAWNASG------SILNTLQ------------ 525
Query: 371 GEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTIS--VPNPRVEAEEHYYNAKHTKLI 428
+ + + + + K V I +P EE+ +K+T L+
Sbjct: 526 -QLKFYKPY------------ICDNDPKYERLVNAILDFLPKI----EENLICSKYTDLL 568
Query: 429 ELGLQP 434
+ L
Sbjct: 569 RIALMA 574
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* Length = 364 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 1e-08
Identities = 64/382 (16%), Positives = 105/382 (27%), Gaps = 60/382 (15%)
Query: 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAI--VDSLIRRLFDHQLGLDSLTPIASIHDRL 143
+ +I+G G G + A L V + RR + + +
Sbjct: 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQ------ 54
Query: 144 RCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQH 203
DI D + V H + +RS
Sbjct: 55 ---------------CDISDPDDSQAKLSPLTD--VTHV-----FYVTWANRSTEQENCE 92
Query: 204 NNVIGTLNVLFAMKEFRQECHLVKLGT-MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQ 262
N NVL A+ + L T Y P G I + T+ LP K
Sbjct: 93 ANSKMFRNVLDAVIPNCPNLKHISLQTGRKHYMGPFES--YGKIESHDPPYTEDLPRLKY 150
Query: 263 ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322
+ +Y L + + K G+ + G ++G + N + V+
Sbjct: 151 MNFYYDLEDIM----LEEVEKKEGLTWSVHRPGNIFG------FSPYSMMNLVGTLCVYA 200
Query: 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEL---AIANPAQPGEFRVFNQF 379
+ G L G GY D D E A +P E FN
Sbjct: 201 A------ICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYAKNE--AFNVS 252
Query: 380 T-EQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLI--ELGLQPHI 436
+ F ++ E+ G++ + + I E GL P
Sbjct: 253 NGDVFKWKHFWKVL---AEQFGVECGEYEEGVDLKLQDLMKGKEPVWEEIVRENGLTPTK 309
Query: 437 LSDSLLDSLLNFAIQFKDRVDS 458
L D + + + + +DS
Sbjct: 310 LKDVGIWWFGDVILGNECFLDS 331
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} Length = 336 | Back alignment and structure |
|---|
Score = 54.8 bits (133), Expect = 2e-08
Identities = 42/196 (21%), Positives = 73/196 (37%), Gaps = 51/196 (26%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLT------PIAS 138
+ ++++ GG G+ G ++ K + +++ +D L +
Sbjct: 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVIN------------IDKLGYGSNPANLKD 49
Query: 139 IHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRS-- 196
+ D GD+ D+E + E + + D VVH A S +DRS
Sbjct: 50 LEDD---------PRYTFVKGDVADYELVKELVR--KVDGVVHL-----AAESHVDRSIS 93
Query: 197 -RAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTD 255
+F +NVIGT +L +++ E V + T YG DI +G T+
Sbjct: 94 SPEIFLH-SNVIGTYTLLESIRRENPEVRFVHVSTDEVYG----DILKGSF-------TE 141
Query: 256 TLPYPKQASSFYHLSK 271
SS Y +K
Sbjct: 142 NDRL--MPSSPYSATK 155
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* Length = 361 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 4e-08
Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 43/144 (29%)
Query: 88 RVMIIGGDGYCGWATALH-LSNKGYEVAIVDSL-----IRRLFDHQLGLDSLTPIASIHD 141
+++I GG G+ G A H + N V +D L L+SL+ I+ +
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGN----------LESLSDISE-SN 50
Query: 142 RLRCWKSLTGKNIELYI---GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRS-- 196
R Y DICD ++ F+ ++PDAV+H A S +DRS
Sbjct: 51 R--------------YNFEHADICDSAEITRIFEQYQPDAVMHL-----AAESHVDRSIT 91
Query: 197 -RAVFTQHNNVIGTLNVLFAMKEF 219
A F + N++GT +L +++
Sbjct: 92 GPAAFIE-TNIVGTYALLEVARKY 114
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A Length = 369 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 3e-07
Identities = 41/323 (12%), Positives = 85/323 (26%), Gaps = 66/323 (20%)
Query: 151 GKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTL 210
+ + E L + + D +VH + NV
Sbjct: 24 TDHHIFEVHRQTKEEELESALL--KADFIVHLAGVNRPEHD-------KEFSLGNVSYLD 74
Query: 211 NVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLS 270
+VL + ++ ++ + T + + Y S
Sbjct: 75 HVLDILTRNTKKPAILL--SSSIQATQD--------------------------NPYGES 106
Query: 271 KVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCV 330
K+ + + +G ++G + +Y+ V T FC
Sbjct: 107 KLQGEQLLREYAEEYGNTVYIYRWPNLFGKW-----------CKPNYNSVIAT----FCY 151
Query: 331 QAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQ-FTEQFSVNQLA 389
+ A + V + D V ++ AI E V + ++ ++
Sbjct: 152 KIARNEEIQVN-DRNVELTLNYVDDIVAEIKRAIEGTPTI-ENGVPTVPNVFKVTLGEIV 209
Query: 390 ALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFA 449
L+ K + ++P E K L P L ++
Sbjct: 210 DLLYKFKQS----RLDRTLPKLDNLFE------KDLYSTYLSYLPSTDFSYPLLMNVDDR 259
Query: 450 IQFKDRVDSKQ-IMPSVSWRKIG 471
F + + + SV+ K G
Sbjct: 260 GSFTEFIKTPDRGQVSVNISKPG 282
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 Length = 660 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 32/151 (21%), Positives = 56/151 (37%), Gaps = 21/151 (13%)
Query: 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFN--QFTE 381
A+ + + G P+ + G Q R + DIRD ++ + I N + + N
Sbjct: 511 AITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPEN 570
Query: 382 QFSVNQLAALVTKAGEKLGLDVKTIS-VPNPRVEAEEHY---Y-----------NAKHTK 426
+ S+ +L ++ + EK L VE+ +Y Y NA
Sbjct: 571 EASIEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHR-- 628
Query: 427 LIELGLQPHILSDSLLDSLLNFAIQFKDRVD 457
L +P I +D L+F ++ D D
Sbjct: 629 --CLDWEPKIDMQETIDETLDFFLRTVDLTD 657
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* Length = 337 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 38/141 (26%), Positives = 54/141 (38%), Gaps = 34/141 (24%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLT------PIASIHD 141
R+++ GG G+ G L Y D +I LDSLT +A +
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVI--------VLDSLTYAGNRANLAPVDA 53
Query: 142 RLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRS---RA 198
+ GDI D L+ + DA+VHF A S +DRS +
Sbjct: 54 D---------PRLRFVHGDIRDAGLLARELR--GVDAIVHF-----AAESHVDRSIAGAS 97
Query: 199 VFTQHNNVIGTLNVLFAMKEF 219
VFT+ NV GT +L +
Sbjct: 98 VFTE-TNVQGTQTLLQCAVDA 117
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} Length = 321 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 8e-06
Identities = 35/151 (23%), Positives = 57/151 (37%), Gaps = 30/151 (19%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
+ R +I G G+ G A HL+ + EV R
Sbjct: 11 GSMRALITGVAGFVGKYLANHLTEQNVEVF---GTSRN---------------------- 45
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHN 204
N+E+ DI D + + + +PD + H + S S T
Sbjct: 46 --NEAKLPNVEMISLDIMDSQRVKKVISDIKPDYIFHLAAKSSVKDSW---LNKKGTFST 100
Query: 205 NVIGTLNVLFAMKEFRQECHLVKLGTMGEYG 235
NV GTL+VL A+++ +C ++ +G+ EYG
Sbjct: 101 NVFGTLHVLDAVRDSNLDCRILTIGSSEEYG 131
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 Length = 313 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 2e-05
Identities = 61/388 (15%), Positives = 122/388 (31%), Gaps = 85/388 (21%)
Query: 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRL 143
K RV+I+GG GY G + G+ + L R + S D++
Sbjct: 2 DKKSRVLIVGGTGYIGKRIVNASISLGHPTYV---LFRP------------EVVSNIDKV 46
Query: 144 RCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQH 203
+ +L + D + L ++ K D V+ S + A
Sbjct: 47 QMLLYFKQLGAKLIEASLDDHQRLVDALKQV--DVVI----------SAL----AGGVLS 90
Query: 204 NNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQA 263
++++ L ++ A+K E +K E+G D + + Q
Sbjct: 91 HHILEQLKLVEAIK----EAGNIKRFLPSEFGMD----------------PDIMEHALQP 130
Query: 264 SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323
S + K I +A I T ++ + G + DG
Sbjct: 131 GSITFIDKRKVRRAI----EAASIPYTYVSSNMFAGY---------FAGSLAQLDGHMMP 177
Query: 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQF 383
++ +YG G ++D D +I +P +
Sbjct: 178 PRDKV----------LIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNIL 227
Query: 384 SVNQLAALVTK-AGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLL 442
S ++ + + + + LD IS ++ + K E ++ H+
Sbjct: 228 SQKEVIQIWERLSEQN--LDKIYISS-------QDFLADMKDKSYEEKIVRCHLYQIFFR 278
Query: 443 DSLLNFAIQFKDRVDSKQIMPSVSWRKI 470
L NF I + +++ ++ P V + +
Sbjct: 279 GDLYNFEIG-PNAIEATKLYPEVKYVTM 305
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} Length = 227 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 1e-04
Identities = 34/218 (15%), Positives = 65/218 (29%), Gaps = 54/218 (24%)
Query: 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEV-AIVDSLIRRLFDHQLGLDSLTPIASIHDR 142
K K++++IG G+ G A N+G+EV A+V R I ++
Sbjct: 2 EKVKKIVLIGASGFVGSALLNEALNRGFEVTAVV----RHPEK----------IKIENEH 47
Query: 143 LRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVH-FGEQRSAPYSMIDRSRAVFT 201
L+ K D+ + + E K DAV+ F + P + D
Sbjct: 48 LKVKK-----------ADVSSLDEVCEVCKGA--DAVISAFNPGWNNP-DIYDE------ 87
Query: 202 QHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPK 261
+ L ++ +K+ + +G G ++ + +
Sbjct: 88 ---TIKVYLTIIDGVKKAGVN-RFLMVGGAG--------------SLFIAPGLRLMDSGE 129
Query: 262 QASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYG 299
+ K + F K I +
Sbjct: 130 VPENILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMR 167
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* Length = 346 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 6e-04
Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 16/102 (15%)
Query: 79 SSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIAS 138
S PS RV+I G G+ G A + I L R P
Sbjct: 3 VSPVPSPKGRVLIAGATGFIGQFVATASLDAHRPTYI---LAR-------------PGPR 46
Query: 139 IHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVV 180
+ + +K+L K + G I + E + + K E D VV
Sbjct: 47 SPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVV 88
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 479 | |||
| 1i24_A | 404 | Sulfolipid biosynthesis protein SQD1; SDR, short-c | 100.0 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 100.0 | |
| 4egb_A | 346 | DTDP-glucose 4,6-dehydratase; rhamnose pathway, ce | 100.0 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 100.0 | |
| 3ehe_A | 313 | UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, | 100.0 | |
| 3enk_A | 341 | UDP-glucose 4-epimerase; seattle structural genomi | 100.0 | |
| 3ko8_A | 312 | NAD-dependent epimerase/dehydratase; isomerase, UD | 100.0 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 100.0 | |
| 2pk3_A | 321 | GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, shor | 100.0 | |
| 2hun_A | 336 | 336AA long hypothetical DTDP-glucose 4,6-dehydrat; | 100.0 | |
| 1sb8_A | 352 | WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCN | 100.0 | |
| 2p5y_A | 311 | UDP-glucose 4-epimerase; TTHA0591, structural geno | 100.0 | |
| 2c20_A | 330 | UDP-glucose 4-epimerase; carbohydrate metabolism, | 100.0 | |
| 3slg_A | 372 | PBGP3 protein; structural genomics, seattle struct | 100.0 | |
| 4b8w_A | 319 | GDP-L-fucose synthase; oxidoreductase; HET: NAP GD | 100.0 | |
| 1ek6_A | 348 | UDP-galactose 4-epimerase; short-chain dehydrogena | 100.0 | |
| 3sxp_A | 362 | ADP-L-glycero-D-mannoheptose-6-epimerase; rossman | 100.0 | |
| 1orr_A | 347 | CDP-tyvelose-2-epimerase; rossmann fold, short-cha | 100.0 | |
| 1rpn_A | 335 | GDP-mannose 4,6-dehydratase; short-chain dehydroge | 100.0 | |
| 1udb_A | 338 | Epimerase, UDP-galactose-4-epimerase; isomerase; H | 100.0 | |
| 1r6d_A | 337 | TDP-glucose-4,6-dehydratase; rossmann fold, short- | 100.0 | |
| 1rkx_A | 357 | CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; | 100.0 | |
| 2c5a_A | 379 | GDP-mannose-3', 5'-epimerase; short chain dehydrat | 100.0 | |
| 1oc2_A | 348 | DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnos | 100.0 | |
| 1gy8_A | 397 | UDP-galactose 4-epimerase; oxidoreductase; HET: NA | 100.0 | |
| 2q1s_A | 377 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2bll_A | 345 | Protein YFBG; decarboxylase, short chain dehydroge | 100.0 | |
| 1e6u_A | 321 | GDP-fucose synthetase; epimerase/reductase, SDR, R | 100.0 | |
| 1kew_A | 361 | RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fo | 100.0 | |
| 2yy7_A | 312 | L-threonine dehydrogenase; thermolabIle, flavobact | 100.0 | |
| 3vps_A | 321 | TUNA, NAD-dependent epimerase/dehydratase; tunicam | 100.0 | |
| 1t2a_A | 375 | GDP-mannose 4,6 dehydratase; structural genomics c | 100.0 | |
| 1db3_A | 372 | GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lya | 100.0 | |
| 2z1m_A | 345 | GDP-D-mannose dehydratase; short-chain dehydrogena | 100.0 | |
| 2b69_A | 343 | UDP-glucuronate decarboxylase 1; UDP-glucoronic ac | 100.0 | |
| 3sc6_A | 287 | DTDP-4-dehydrorhamnose reductase; RFBD, structural | 100.0 | |
| 2x6t_A | 357 | ADP-L-glycero-D-manno-heptose-6-epimerase; isomera | 100.0 | |
| 1n7h_A | 381 | GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, | 100.0 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 100.0 | |
| 1eq2_A | 310 | ADP-L-glycero-D-mannoheptose 6-epimerase; N-termin | 100.0 | |
| 2pzm_A | 330 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 3ajr_A | 317 | NDP-sugar epimerase; L-threonine dehydrogenase, L- | 100.0 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 100.0 | |
| 2q1w_A | 333 | Putative nucleotide sugar epimerase/ dehydratase; | 100.0 | |
| 2ydy_A | 315 | Methionine adenosyltransferase 2 subunit beta; oxi | 100.0 | |
| 2hrz_A | 342 | AGR_C_4963P, nucleoside-diphosphate-sugar epimeras | 100.0 | |
| 1z45_A | 699 | GAL10 bifunctional protein; epimerase, mutarotase, | 100.0 | |
| 1vl0_A | 292 | DTDP-4-dehydrorhamnose reductase, RFBD ortholog; s | 100.0 | |
| 1n2s_A | 299 | DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold | 100.0 | |
| 1z7e_A | 660 | Protein aRNA; rossmann fold, OB-like fold, hydrola | 100.0 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 100.0 | |
| 2c29_D | 337 | Dihydroflavonol 4-reductase; flavonoids, short deh | 100.0 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 100.0 | |
| 2rh8_A | 338 | Anthocyanidin reductase; flavonoids, rossmann fold | 100.0 | |
| 2p4h_X | 322 | Vestitone reductase; NADPH-dependent reductase, is | 100.0 | |
| 2v6g_A | 364 | Progesterone 5-beta-reductase; tyrosine-dependent | 100.0 | |
| 4b4o_A | 298 | Epimerase family protein SDR39U1; isomerase; HET: | 100.0 | |
| 2ggs_A | 273 | 273AA long hypothetical DTDP-4-dehydrorhamnose red | 100.0 | |
| 3oh8_A | 516 | Nucleoside-diphosphate sugar epimerase (SULA FAMI; | 100.0 | |
| 4f6c_A | 427 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 2gn4_A | 344 | FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann | 100.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 100.0 | |
| 4dqv_A | 478 | Probable peptide synthetase NRP (peptide synthase; | 100.0 | |
| 3nzo_A | 399 | UDP-N-acetylglucosamine 4,6-dehydratase; structura | 100.0 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 100.0 | |
| 4f6l_B | 508 | AUSA reductase domain protein; thioester reductase | 100.0 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 100.0 | |
| 3st7_A | 369 | Capsular polysaccharide synthesis enzyme CAP5F; ro | 100.0 | |
| 3ay3_A | 267 | NAD-dependent epimerase/dehydratase; glucuronic ac | 99.98 | |
| 3rft_A | 267 | Uronate dehydrogenase; apoenzyme, rossmann fold, N | 99.97 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 99.97 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 99.97 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 99.97 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 99.97 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 99.96 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 99.96 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 99.96 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 99.96 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 99.95 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 99.95 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 99.95 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 99.95 | |
| 2a35_A | 215 | Hypothetical protein PA4017; alpha-beta-alpha sand | 99.95 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 99.95 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 99.95 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 99.95 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 99.94 | |
| 3un1_A | 260 | Probable oxidoreductase; structural genomics, PSI- | 99.94 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 99.94 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 99.94 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 99.94 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 99.94 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 99.94 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 99.94 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.94 | |
| 2dkn_A | 255 | 3-alpha-hydroxysteroid dehydrogenase; oxidoreducta | 99.94 | |
| 3v2h_A | 281 | D-beta-hydroxybutyrate dehydrogenase; structural g | 99.94 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.94 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 99.94 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 99.94 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 99.94 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 99.94 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.94 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 99.93 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 99.93 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 99.93 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.93 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 99.93 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 99.93 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 99.93 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 99.93 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 99.93 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 99.93 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 99.93 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 99.93 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 99.93 | |
| 1ja9_A | 274 | 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; p | 99.93 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 99.93 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 99.93 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 99.93 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 99.93 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 99.93 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 99.93 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 99.93 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 99.93 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 99.93 | |
| 3i4f_A | 264 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.93 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 99.93 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 99.93 | |
| 2hq1_A | 247 | Glucose/ribitol dehydrogenase; CTH-1438, structura | 99.93 | |
| 3vtz_A | 269 | Glucose 1-dehydrogenase; rossmann fold, oxidoreduc | 99.93 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 99.93 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 99.93 | |
| 2fwm_X | 250 | 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; e | 99.93 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 99.93 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 99.93 | |
| 4dmm_A | 269 | 3-oxoacyl-[acyl-carrier-protein] reductase; rossma | 99.93 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 99.93 | |
| 3d7l_A | 202 | LIN1944 protein; APC89317, structural genomics, PS | 99.92 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 99.92 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 99.92 | |
| 3uf0_A | 273 | Short-chain dehydrogenase/reductase SDR; gluconate | 99.92 | |
| 2q2v_A | 255 | Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidore | 99.92 | |
| 1uay_A | 242 | Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid | 99.92 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 99.92 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 99.92 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 99.92 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 99.92 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 99.92 | |
| 2wyu_A | 261 | Enoyl-[acyl carrier protein] reductase; oxidoreduc | 99.92 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 99.92 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 99.92 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 99.92 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 99.92 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 99.92 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 99.92 | |
| 3uxy_A | 266 | Short-chain dehydrogenase/reductase SDR; structura | 99.92 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 99.92 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 99.92 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 99.92 | |
| 1h5q_A | 265 | NADP-dependent mannitol dehydrogenase; oxidoreduct | 99.92 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 99.92 | |
| 4iin_A | 271 | 3-ketoacyl-acyl carrier protein reductase (FABG); | 99.92 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 99.92 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 99.92 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 99.92 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 99.92 | |
| 2ag5_A | 246 | DHRS6, dehydrogenase/reductase (SDR family) member | 99.92 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 99.92 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 99.92 | |
| 2ph3_A | 245 | 3-oxoacyl-[acyl carrier protein] reductase; TTHA04 | 99.92 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 99.92 | |
| 2dtx_A | 264 | Glucose 1-dehydrogenase related protein; rossmann | 99.92 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 99.92 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 99.92 | |
| 3t4x_A | 267 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.92 | |
| 2yut_A | 207 | Putative short-chain oxidoreductase; alpha and bet | 99.92 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 99.92 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 99.92 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 99.92 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 99.92 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 99.92 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 99.92 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 99.92 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.92 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.92 | |
| 1yxm_A | 303 | Pecra, peroxisomal trans 2-enoyl COA reductase; pe | 99.92 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 99.92 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 99.92 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 99.92 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 99.92 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 99.92 | |
| 3u9l_A | 324 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.92 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 99.92 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 99.92 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 99.91 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 99.91 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 99.91 | |
| 3gk3_A | 269 | Acetoacetyl-COA reductase; acetoacetyl-CO reductas | 99.91 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 99.91 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 99.91 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 99.91 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 99.91 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 99.91 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 99.91 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 99.91 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.91 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 99.91 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 99.91 | |
| 4iiu_A | 267 | 3-oxoacyl-[acyl-carrier protein] reductase; struct | 99.91 | |
| 4b79_A | 242 | PA4098, probable short-chain dehydrogenase; oxidor | 99.91 | |
| 3ezl_A | 256 | Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA | 99.91 | |
| 3oec_A | 317 | Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; | 99.91 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 99.91 | |
| 1o5i_A | 249 | 3-oxoacyl-(acyl carrier protein) reductase; TM1169 | 99.91 | |
| 3tl3_A | 257 | Short-chain type dehydrogenase/reductase; ssgcid, | 99.91 | |
| 1uzm_A | 247 | 3-oxoacyl-[acyl-carrier protein] reductase; beta-k | 99.91 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 99.91 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 99.91 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 99.91 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 99.91 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.91 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 99.91 | |
| 2bd0_A | 244 | Sepiapterin reductase; oxidoreductase; HET: NAP BI | 99.91 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 99.91 | |
| 3qlj_A | 322 | Short chain dehydrogenase; structural genomics, se | 99.91 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 99.91 | |
| 4e4y_A | 244 | Short chain dehydrogenase family protein; structur | 99.91 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 99.91 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 99.91 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 99.91 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 99.9 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 99.9 | |
| 2ekp_A | 239 | 2-deoxy-D-gluconate 3-dehydrogenase; structural ge | 99.9 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 99.9 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 99.9 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 99.9 | |
| 3ctm_A | 279 | Carbonyl reductase; alcohol dehydrogenase, short-c | 99.9 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 99.9 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 99.9 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 99.9 | |
| 3uce_A | 223 | Dehydrogenase; rossmann fold, oxidoreductase; HET: | 99.9 | |
| 1sby_A | 254 | Alcohol dehydrogenase; ternary complex, NAD, trifl | 99.9 | |
| 2x9g_A | 288 | PTR1, pteridine reductase; short chain dehydrogena | 99.9 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 99.9 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 99.9 | |
| 3rku_A | 287 | Oxidoreductase YMR226C; substrate fingerprint, sho | 99.9 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 99.9 | |
| 3orf_A | 251 | Dihydropteridine reductase; alpha-beta-alpha sandw | 99.9 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 99.9 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 99.9 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 99.9 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 99.9 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 99.9 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 99.9 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 99.9 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 99.9 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 99.9 | |
| 2qhx_A | 328 | Pteridine reductase 1; oxidoreductase, short-chain | 99.9 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 99.9 | |
| 3gdg_A | 267 | Probable NADP-dependent mannitol dehydrogenase; ro | 99.89 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 99.89 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 99.89 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 99.89 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 99.89 | |
| 1ooe_A | 236 | Dihydropteridine reductase; structural genomics, P | 99.89 | |
| 1sny_A | 267 | Sniffer CG10964-PA; alpha and beta protein, rossma | 99.89 | |
| 1xu9_A | 286 | Corticosteroid 11-beta-dehydrogenase, isozyme 1; h | 99.89 | |
| 3icc_A | 255 | Putative 3-oxoacyl-(acyl carrier protein) reducta; | 99.89 | |
| 3kzv_A | 254 | Uncharacterized oxidoreductase YIR035C; cytoplasmi | 99.89 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 99.89 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 99.89 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 99.89 | |
| 1fjh_A | 257 | 3alpha-hydroxysteroid dehydrogenase/carbonyl reduc | 99.89 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 99.88 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 99.88 | |
| 3kvo_A | 346 | Hydroxysteroid dehydrogenase-like protein 2; HSDL2 | 99.88 | |
| 1dhr_A | 241 | Dihydropteridine reductase; oxidoreductase(acting | 99.88 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 99.88 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 99.88 | |
| 1e7w_A | 291 | Pteridine reductase; dihydrofolate reductase, shor | 99.88 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 99.88 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 99.88 | |
| 4h15_A | 261 | Short chain alcohol dehydrogenase-related dehydro; | 99.88 | |
| 2h7i_A | 269 | Enoyl-[acyl-carrier-protein] reductase [NADH]; oxi | 99.88 | |
| 3e9n_A | 245 | Putative short-chain dehydrogenase/reductase; stru | 99.87 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 99.87 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 99.87 | |
| 1oaa_A | 259 | Sepiapterin reductase; tetrahydrobiopterin, oxidor | 99.87 | |
| 3u0b_A | 454 | Oxidoreductase, short chain dehydrogenase/reducta | 99.86 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 99.85 | |
| 1jtv_A | 327 | 17 beta-hydroxysteroid dehydrogenase type 1; stero | 99.85 | |
| 1d7o_A | 297 | Enoyl-[acyl-carrier protein] reductase (NADH) PRE; | 99.83 | |
| 1gz6_A | 319 | Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MF | 99.83 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 99.83 | |
| 2fr1_A | 486 | Erythromycin synthase, eryai; short chain dehydrog | 99.83 | |
| 2z5l_A | 511 | Tylkr1, tylactone synthase starter module and modu | 99.81 | |
| 3mje_A | 496 | AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1. | 99.78 | |
| 3oml_A | 613 | GH14720P, peroxisomal multifunctional enzyme type | 99.76 | |
| 2o2s_A | 315 | Enoyl-acyl carrier reductase; enoyl reductase, tri | 99.76 | |
| 2ptg_A | 319 | Enoyl-acyl carrier reductase; apicomplexa, enoyl ( | 99.76 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 99.75 | |
| 3lt0_A | 329 | Enoyl-ACP reductase; triclosan, triclosan variant, | 99.74 | |
| 3qp9_A | 525 | Type I polyketide synthase pikaii; rossmann fold, | 99.73 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.71 | |
| 3zu3_A | 405 | Putative reductase YPO4104/Y4119/YP_4011; oxidored | 99.66 | |
| 2et6_A | 604 | (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-ox | 99.64 | |
| 2uv9_A | 1878 | Fatty acid synthase alpha subunits; fungal, dehydr | 99.63 | |
| 3s8m_A | 422 | Enoyl-ACP reductase; rossmann fold, oxidoreductase | 99.62 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 99.59 | |
| 4eue_A | 418 | Putative reductase CA_C0462; TER, biofuel, synthet | 99.59 | |
| 2uv8_A | 1887 | Fatty acid synthase subunit alpha (FAS2); fatty ac | 99.59 | |
| 2pff_A | 1688 | Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl | 99.58 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 99.39 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 99.26 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 99.1 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 99.1 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 98.92 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 98.86 | |
| 4ggo_A | 401 | Trans-2-enoyl-COA reductase; rossmann fold, oxidor | 98.81 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 98.81 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 98.69 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 98.66 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 98.55 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 98.55 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 98.51 | |
| 1u7z_A | 226 | Coenzyme A biosynthesis bifunctional protein coabc | 98.41 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.4 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 98.4 | |
| 2gk4_A | 232 | Conserved hypothetical protein; alpha-beta-alpha s | 98.35 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 98.35 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 98.31 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 98.31 | |
| 5mdh_A | 333 | Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH | 98.25 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 98.24 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.1 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.99 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 97.97 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.83 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 97.83 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 97.76 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 97.67 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.65 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 97.64 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.61 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 97.55 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.55 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 97.54 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 97.48 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 97.48 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 97.43 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.36 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 97.35 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 97.25 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 97.24 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 97.23 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 97.23 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 97.23 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.23 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 97.23 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 97.22 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 97.19 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 97.16 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 97.16 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 97.15 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 97.14 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 97.1 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 97.09 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.09 | |
| 4h7p_A | 345 | Malate dehydrogenase; ssgcid, structural G seattle | 97.08 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 97.08 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 97.07 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.06 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.02 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 97.02 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 97.02 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 97.0 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 96.97 | |
| 3gxh_A | 157 | Putative phosphatase (DUF442); YP_001181608.1, str | 96.97 | |
| 1p9o_A | 313 | Phosphopantothenoylcysteine synthetase; ligase; 2. | 96.94 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.93 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 96.89 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 96.88 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 96.86 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 96.82 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 96.82 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 96.81 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 96.81 | |
| 1y8q_B | 640 | Anthracycline-, ubiquitin-like 2 activating enzyme | 96.81 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 96.8 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 96.8 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 96.79 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.79 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 96.78 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 96.77 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 96.77 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 96.75 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.75 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 96.74 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 96.72 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 96.72 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 96.72 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 96.71 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 96.7 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.69 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 96.66 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.65 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.65 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 96.65 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 96.64 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 96.59 | |
| 7mdh_A | 375 | Protein (malate dehydrogenase); chloroplastic mala | 96.57 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 96.57 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 96.54 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.52 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 96.49 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 96.42 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 96.42 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.41 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 96.4 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 96.39 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 96.37 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 96.37 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 96.32 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 96.3 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 96.28 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 96.24 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 96.23 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.17 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 96.17 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.15 | |
| 2hjs_A | 340 | USG-1 protein homolog; aspartate-semialdehyde dehy | 96.14 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 96.14 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.14 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 96.12 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.08 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 96.07 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 96.05 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.02 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.0 | |
| 1tt5_B | 434 | Ubiquitin-activating enzyme E1C isoform 1; cell cy | 96.0 | |
| 2r00_A | 336 | Aspartate-semialdehyde dehydrogenase; conformation | 95.99 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 95.99 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 95.97 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 95.97 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 95.92 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 95.91 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 95.91 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 95.9 | |
| 3pwk_A | 366 | Aspartate-semialdehyde dehydrogenase; NADP binding | 95.87 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 95.83 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 95.82 | |
| 1kjq_A | 391 | GART 2, phosphoribosylglycinamide formyltransferas | 95.8 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 95.79 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 95.78 | |
| 1tt5_A | 531 | APPBP1, amyloid protein-binding protein 1; cell cy | 95.77 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 95.77 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.75 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.74 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.74 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.73 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 95.72 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 95.7 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 95.69 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.67 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.66 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 95.65 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 95.65 | |
| 3ax6_A | 380 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 95.64 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 95.64 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 95.63 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 95.63 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.61 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 95.61 | |
| 1t4b_A | 367 | Aspartate-semialdehyde dehydrogenase; asadh, HOSR, | 95.58 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 95.58 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 95.58 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 95.57 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 95.56 | |
| 4gx0_A | 565 | TRKA domain protein; membrane protein, ION channel | 95.53 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 95.53 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.49 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.49 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 95.48 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.47 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.46 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 95.44 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 95.44 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.41 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 95.41 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 95.38 | |
| 1h2b_A | 359 | Alcohol dehydrogenase; oxidoreductase, archaea, hy | 95.38 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 95.37 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 95.35 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.35 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 95.33 | |
| 3cmm_A | 1015 | Ubiquitin-activating enzyme E1 1; UBA1, protein tu | 95.33 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.25 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 95.24 | |
| 2dwc_A | 433 | PH0318, 433AA long hypothetical phosphoribosylglyc | 95.24 |
| >1i24_A Sulfolipid biosynthesis protein SQD1; SDR, short-chain dehydrogenase/reductase, rossmann fold, BIO protein; HET: NAD UPG; 1.20A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1i2c_A* 1i2b_A* 1qrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-52 Score=421.77 Aligned_cols=396 Identities=88% Similarity=1.390 Sum_probs=304.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..++++|||||||||||++|+++|+++|++|+++++..+.......+...+.....+.+.+..+......++.++.+|++
T Consensus 8 ~~~~~~vlVTG~tGfIG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~~Dl~ 87 (404)
T 1i24_A 8 HHHGSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDIC 87 (404)
T ss_dssp ----CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTT
T ss_pred ccCCCeEEEeCCCcHHHHHHHHHHHhCCCeEEEEEecCccccccccccccccccchhhhhhhhHhhccCCceEEEECCCC
Confidence 34688999999999999999999999999999999864321110000011111111111222221222357899999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIE 242 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~ 242 (479)
|.+++.++++..++|+||||||.........++.++..++++|+.|+.+++++|++.+.+++|||+||.++||....++.
T Consensus 88 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~gt~~ll~a~~~~~~~~~~V~~SS~~vyg~~~~~~~ 167 (404)
T 1i24_A 88 DFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIE 167 (404)
T ss_dssp SHHHHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBC
T ss_pred CHHHHHHHHhccCCCEEEECCCCCCccchhhCccchhhhHHHHHHHHHHHHHHHHHhCCCcEEEEeCcHHHhCCCCCCCC
Confidence 99999999985559999999997654433444444445789999999999999999886339999999999998766777
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|+.++..+.+.++..+.+..+.+.|+.||+++|.+++.+++++|++++++||++||||+..+....+.++++..+.|.+.
T Consensus 168 E~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ivrp~~v~Gp~~~~~~~~~~~~~~~~~~~~~~ 247 (404)
T 1i24_A 168 EGYITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFG 247 (404)
T ss_dssp SSEEEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTC
T ss_pred ccccccccccccccccCCCCCCChhHHHHHHHHHHHHHHHHhcCCeEEEEecceeeCCCCCccccccccccccccccchh
Confidence 77655443332222223556788999999999999999988889999999999999998764333334455555566666
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhhhcCCc
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLD 402 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~~~g~~ 402 (479)
.++..++..+..++++.+++++.+.++|+||+|+|++++.+++++...|+.++||++++.+|+.|+++.+.+.++.+|.+
T Consensus 248 ~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~~~~l~~~~~~g~~~~yni~~~~~s~~e~~~~i~~~~~~~g~~ 327 (404)
T 1i24_A 248 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLD 327 (404)
T ss_dssp CHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTTCC
T ss_pred hHHHHHHHHHHcCCeeEEeCCCCceECcEEHHHHHHHHHHHHhCcccCCCceEEEECCCCCcHHHHHHHHHHHHHhhCCC
Confidence 77888999999999988899989999999999999999999998665453359999987799999999999975556777
Q ss_pred ceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHhcccCCcCCCCCcceecccccCCcccc
Q 011707 403 VKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTVA 478 (479)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (479)
+++...|.+........+.+|++|+++|||+|+++++++++.+++|+++++++++.+.+.|...|++.+.+.|+|.
T Consensus 328 ~~~~~~p~~~~~~~~~~~~~d~~k~~~LG~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (404)
T 1i24_A 328 VKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSMT 403 (404)
T ss_dssp CCEEEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHTGGGCCGGGSSCCCCTTTCCSSCCCC-
T ss_pred ccccccCcccCccccceEecCHHHHHHcCCCcCcCHHHHHHHHHHHHHhhhhccChhhccCCccccccceeecccc
Confidence 7766666544333344566899999889999999999999999999999999999999999999999999999874
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-46 Score=367.52 Aligned_cols=314 Identities=21% Similarity=0.266 Sum_probs=253.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccC----CCceeEEEc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT----GKNIELYIG 159 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~v~~ 159 (479)
+++|+|||||||||||++|+++|+++|++|++++|....... ....+.... ..+++++.+
T Consensus 23 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 86 (351)
T 3ruf_A 23 FSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQY----------------NLDEVKTLVSTEQWSRFCFIEG 86 (351)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHH----------------HHHHHHHTSCHHHHTTEEEEEC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchh----------------hhhhhhhccccccCCceEEEEc
Confidence 457899999999999999999999999999999986542111 111111111 157999999
Q ss_pred ccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC
Q 011707 160 DICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI 239 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~ 239 (479)
|++|.+++.++++ ++|+|||+||.........+ +...+++|+.|+.+++++|++.+++ +|||+||.++||....
T Consensus 87 Dl~d~~~~~~~~~--~~d~Vih~A~~~~~~~~~~~---~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~ 160 (351)
T 3ruf_A 87 DIRDLTTCEQVMK--GVDHVLHQAALGSVPRSIVD---PITTNATNITGFLNILHAAKNAQVQ-SFTYAASSSTYGDHPA 160 (351)
T ss_dssp CTTCHHHHHHHTT--TCSEEEECCCCCCHHHHHHC---HHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCC
T ss_pred cCCCHHHHHHHhc--CCCEEEECCccCCcchhhhC---HHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEecHHhcCCCCC
Confidence 9999999999999 89999999997654443333 3557899999999999999999987 9999999999987654
Q ss_pred -CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCC
Q 011707 240 -DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318 (479)
Q Consensus 240 -~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~ 318 (479)
++.|+ .+..|.+.|+.+|+++|.+++.+++++|++++++||++||||+..+ .
T Consensus 161 ~~~~E~--------------~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~-------------~ 213 (351)
T 3ruf_A 161 LPKVEE--------------NIGNPLSPYAVTKYVNEIYAQVYARTYGFKTIGLRYFNVFGRRQDP-------------N 213 (351)
T ss_dssp SSBCTT--------------CCCCCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECSEESTTCCC-------------C
T ss_pred CCCccC--------------CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeeCceeCcCCCC-------------C
Confidence 56665 3556789999999999999999999999999999999999998654 2
Q ss_pred CcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC-CCCCCceEEEeCC-CCcCHHHHHHHHHHHh
Q 011707 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP-AQPGEFRVFNQFT-EQFSVNQLAALVTKAG 396 (479)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~-~~~g~~~~~ni~~-~~~s~~el~~~i~~~~ 396 (479)
+.+..++..++..+..++++.+++++++.++|+|++|+|++++.++.++ ...++ +||+++ +.+|+.|+++.+.+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~--~~ni~~~~~~s~~e~~~~i~~~- 290 (351)
T 3ruf_A 214 GAYAAVIPKWTAAMLKGDDVYINGDGETSRDFCYIDNVIQMNILSALAKDSAKDN--IYNVAVGDRTTLNELSGYIYDE- 290 (351)
T ss_dssp STTCCHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGGCSE--EEEESCSCCEEHHHHHHHHHHH-
T ss_pred cchhhHHHHHHHHHHcCCCcEEeCCCCeEEeeEEHHHHHHHHHHHHhhccccCCC--EEEeCCCCcccHHHHHHHHHHH-
Confidence 2334567888999999999999999999999999999999999999873 33444 999998 679999999999998
Q ss_pred hhcCCc-----ceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhc
Q 011707 397 EKLGLD-----VKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFK 453 (479)
Q Consensus 397 ~~~g~~-----~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~ 453 (479)
+|.+ .+....+.. ........+|++|+++ |||+|+++++++++++++|++...
T Consensus 291 --~g~~~~~~~~~~~~~~~~--~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 349 (351)
T 3ruf_A 291 --LNLIHHIDKLSIKYREFR--SGDVRHSQADVTKAIDLLKYRPNIKIREGLRLSMPWYVRFL 349 (351)
T ss_dssp --HHTTCCC-----EEECCC--TTCCSBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_pred --hCcccccccccccccCCC--CCccceeeeCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhh
Confidence 5552 222222221 2233456799999987 999999999999999999998654
|
| >4egb_A DTDP-glucose 4,6-dehydratase; rhamnose pathway, center for structural genomics of infectio diseases, csgid, niaid; HET: NAD SUC; 3.00A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-45 Score=363.46 Aligned_cols=313 Identities=19% Similarity=0.253 Sum_probs=249.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
..++|+|||||||||||++|+++|+++| ++|+++++....... ..+... ....++.++.+|
T Consensus 21 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~~~v~~~~~~~~~~~~---------------~~l~~~--~~~~~~~~~~~D 83 (346)
T 4egb_A 21 QSNAMNILVTGGAGFIGSNFVHYMLQSYETYKIINFDALTYSGNL---------------NNVKSI--QDHPNYYFVKGE 83 (346)
T ss_dssp ---CEEEEEETTTSHHHHHHHHHHHHHCTTEEEEEEECCCTTCCG---------------GGGTTT--TTCTTEEEEECC
T ss_pred ccCCCeEEEECCccHHHHHHHHHHHhhCCCcEEEEEeccccccch---------------hhhhhh--ccCCCeEEEEcC
Confidence 3568899999999999999999999999 678888775421110 001111 112589999999
Q ss_pred cCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCC--
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN-- 238 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~-- 238 (479)
++|++.+.++++..++|+|||+||.........+ +...+++|+.|+.+++++|++.+++ +|||+||.++||...
T Consensus 84 l~d~~~~~~~~~~~~~d~Vih~A~~~~~~~~~~~---~~~~~~~nv~~~~~ll~a~~~~~~~-~~v~~SS~~vy~~~~~~ 159 (346)
T 4egb_A 84 IQNGELLEHVIKERDVQVIVNFAAESHVDRSIEN---PIPFYDTNVIGTVTLLELVKKYPHI-KLVQVSTDEVYGSLGKT 159 (346)
T ss_dssp TTCHHHHHHHHHHHTCCEEEECCCCC------------CHHHHHHTHHHHHHHHHHHHSTTS-EEEEEEEGGGGCCCCSS
T ss_pred CCCHHHHHHHHhhcCCCEEEECCcccchhhhhhC---HHHHHHHHHHHHHHHHHHHHhcCCC-EEEEeCchHHhCCCCcC
Confidence 9999999999996569999999997654433333 3567899999999999999999987 999999999999863
Q ss_pred CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCC
Q 011707 239 IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318 (479)
Q Consensus 239 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~ 318 (479)
.++.|+ .+..|.+.|+.+|+++|.+++.+++++|++++++||++||||+..+
T Consensus 160 ~~~~E~--------------~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~-------------- 211 (346)
T 4egb_A 160 GRFTEE--------------TPLAPNSPYSSSKASADMIALAYYKTYQLPVIVTRCSNNYGPYQYP-------------- 211 (346)
T ss_dssp CCBCTT--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT--------------
T ss_pred CCcCCC--------------CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEeecceeCcCCCc--------------
Confidence 355665 3557789999999999999999999899999999999999998654
Q ss_pred CcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhh
Q 011707 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGE 397 (479)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~ 397 (479)
..++..++..+..++++.+++++.+.++|+|++|+|++++.+++++. .|+ +||+++ +.+|+.|+++.+.+.
T Consensus 212 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~g~--~~~i~~~~~~s~~e~~~~i~~~-- 283 (346)
T 4egb_A 212 ---EKLIPLMVTNALEGKKLPLYGDGLNVRDWLHVTDHCSAIDVVLHKGR-VGE--VYNIGGNNEKTNVEVVEQIITL-- 283 (346)
T ss_dssp ---TSHHHHHHHHHHTTCCCEEETTSCCEECEEEHHHHHHHHHHHHHHCC-TTC--EEEECCSCCEEHHHHHHHHHHH--
T ss_pred ---cchHHHHHHHHHcCCCceeeCCCCeEEeeEEHHHHHHHHHHHHhcCC-CCC--EEEECCCCceeHHHHHHHHHHH--
Confidence 23567888899999999999999999999999999999999999876 455 999999 579999999999998
Q ss_pred hcCCcce-eeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhccc
Q 011707 398 KLGLDVK-TISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDR 455 (479)
Q Consensus 398 ~~g~~~~-~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~ 455 (479)
+|.+.+ +...+.. ......+.+|++|+++ |||+|+++++++++++++|++..+++
T Consensus 284 -~g~~~~~~~~~~~~--~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~~ 340 (346)
T 4egb_A 284 -LGKTKKDIEYVTDR--LGHDRRYAINAEKMKNEFDWEPKYTFEQGLQETVQWYEKNEEW 340 (346)
T ss_dssp -HTCCGGGCEEECC----CCCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHH
T ss_pred -hCCCcccccccCCC--CCCcceeeccHHHHHHHcCCCCCCCHHHHHHHHHHHHHhhhhh
Confidence 777655 3333322 2233456789999986 99999999999999999999886653
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-44 Score=352.90 Aligned_cols=294 Identities=20% Similarity=0.248 Sum_probs=248.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+|||||||||||++|+++|+++|++|++++|..... . + .+++++.+|++ .+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--------------------~-~-----~~~~~~~~Dl~-~~ 54 (311)
T 3m2p_A 2 SLKIAVTGGTGFLGQYVVESIKNDGNTPIILTRSIGNK--------------------A-I-----NDYEYRVSDYT-LE 54 (311)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCC-------------------------------CCEEEECCCC-HH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCCcc--------------------c-C-----CceEEEEcccc-HH
Confidence 57999999999999999999999999999999862210 0 0 27889999999 99
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEG 244 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~ 244 (479)
++.++++ ++|+|||+|+..... ++...+++|+.++.+++++|++.+++ +|||+||.++||.... ++.|+
T Consensus 55 ~~~~~~~--~~d~Vih~a~~~~~~-------~~~~~~~~n~~~~~~ll~a~~~~~~~-r~v~~SS~~vyg~~~~~~~~E~ 124 (311)
T 3m2p_A 55 DLINQLN--DVDAVVHLAATRGSQ-------GKISEFHDNEILTQNLYDACYENNIS-NIVYASTISAYSDETSLPWNEK 124 (311)
T ss_dssp HHHHHTT--TCSEEEECCCCCCSS-------SCGGGTHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCCGGGCSBCTT
T ss_pred HHHHhhc--CCCEEEEccccCCCC-------ChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEccHHHhCCCCCCCCCCC
Confidence 9999999 899999999976543 23456789999999999999999987 9999999999997653 55665
Q ss_pred ceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccch
Q 011707 245 YITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~ 324 (479)
.+..|.+.|+.+|+++|++++.+++++|++++++||++||||+..+ ..+
T Consensus 125 --------------~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~G~~~~~-----------------~~~ 173 (311)
T 3m2p_A 125 --------------ELPLPDLMYGVSKLACEHIGNIYSRKKGLCIKNLRFAHLYGFNEKN-----------------NYM 173 (311)
T ss_dssp --------------SCCCCSSHHHHHHHHHHHHHHHHHHHSCCEEEEEEECEEECSCC-------------------CCH
T ss_pred --------------CCCCCCchhHHHHHHHHHHHHHHHHHcCCCEEEEeeCceeCcCCCC-----------------CCH
Confidence 3556789999999999999999999899999999999999998653 135
Q ss_pred HHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCcc
Q 011707 325 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDV 403 (479)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~ 403 (479)
+..++..+..++++.+++++++.++|+|++|+|++++.+++++. .++ +||+++ +.+|+.|+++.+.+. +|.+.
T Consensus 174 ~~~~~~~~~~~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~-~~~--~~~i~~~~~~s~~e~~~~i~~~---~g~~~ 247 (311)
T 3m2p_A 174 INRFFRQAFHGEQLTLHANSVAKREFLYAKDAAKSVIYALKQEK-VSG--TFNIGSGDALTNYEVANTINNA---FGNKD 247 (311)
T ss_dssp HHHHHHHHHTCCCEEESSBCCCCEEEEEHHHHHHHHHHHTTCTT-CCE--EEEECCSCEECHHHHHHHHHHH---TTCTT
T ss_pred HHHHHHHHHcCCCeEEecCCCeEEceEEHHHHHHHHHHHHhcCC-CCC--eEEeCCCCcccHHHHHHHHHHH---hCCCC
Confidence 77888889999999999988999999999999999999999876 344 999998 679999999999998 88888
Q ss_pred eeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 404 KTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
++...+.+ .........+|++|+++ |||+|+++++++++++++|++...+
T Consensus 248 ~~~~~~~~-~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~ 298 (311)
T 3m2p_A 248 NLLVKNPN-ANEGIHSSYMDSSKAKELLDFSTDYNFATAVEEIHLLMRGLDD 298 (311)
T ss_dssp CEEECSSS-BCCSCCCBCBCCHHHHHHSCCCCSCCHHHHHHHHHHHHCC---
T ss_pred cceecCCC-CCCCcCceecCHHHHHHHhCCCcccCHHHHHHHHHHHHHhccc
Confidence 77776652 22334556799999988 9999999999999999999876544
|
| >3ehe_A UDP-glucose 4-epimerase (GALE-1); PSI-II, NYSGXRC, ST genomics, protein structure initiative, NEW YORK SGX resear for structural genomics; HET: NAD; 1.87A {Archaeoglobus fulgidus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-45 Score=355.99 Aligned_cols=305 Identities=21% Similarity=0.303 Sum_probs=240.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
||+|||||||||||++|+++|+++| .|+++++....... ....++.++.+|++| +
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g-~~v~~~~~~~~~~~-----------------------~~~~~~~~~~~Dl~~-~ 55 (313)
T 3ehe_A 1 MSLIVVTGGAGFIGSHVVDKLSESN-EIVVIDNLSSGNEE-----------------------FVNEAARLVKADLAA-D 55 (313)
T ss_dssp --CEEEETTTSHHHHHHHHHHTTTS-CEEEECCCSSCCGG-----------------------GSCTTEEEECCCTTT-S
T ss_pred CCEEEEECCCchHHHHHHHHHHhCC-CEEEEEcCCCCChh-----------------------hcCCCcEEEECcCCh-H
Confidence 4689999999999999999999999 55556554321100 012578899999999 8
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEG 244 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~ 244 (479)
++.++++ ++|+|||+|+....... ..++...+++|+.|+.+++++|++.+++ +|||+||.++||.... +..|+
T Consensus 56 ~~~~~~~--~~d~vih~a~~~~~~~~---~~~~~~~~~~nv~~~~~l~~~~~~~~~~-~iv~~SS~~vyg~~~~~~~~E~ 129 (313)
T 3ehe_A 56 DIKDYLK--GAEEVWHIAANPDVRIG---AENPDEIYRNNVLATYRLLEAMRKAGVS-RIVFTSTSTVYGEAKVIPTPED 129 (313)
T ss_dssp CCHHHHT--TCSEEEECCCCCCCC-C---CCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGGCSCSSSSBCTT
T ss_pred HHHHHhc--CCCEEEECCCCCChhhh---hhCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEeCchHHhCcCCCCCCCCC
Confidence 8999998 89999999996543322 2345678899999999999999999987 9999999999997654 55554
Q ss_pred ceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccch
Q 011707 245 YITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~ 324 (479)
.+..+.+.|+.+|+++|.+++.+++++|++++++||++||||+..+ ..
T Consensus 130 --------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~------------------~~ 177 (313)
T 3ehe_A 130 --------------YPTHPISLYGASKLACEALIESYCHTFDMQAWIYRFANVIGRRSTH------------------GV 177 (313)
T ss_dssp --------------SCCCCCSHHHHHHHHHHHHHHHHHHHTTCEEEEEECSCEESTTCCC------------------SH
T ss_pred --------------CCCCCCCHHHHHHHHHHHHHHHHHHhcCCCEEEEeeccccCcCCCc------------------Ch
Confidence 3556789999999999999999999999999999999999998642 34
Q ss_pred HHHHHHHHhcC-CCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCc
Q 011707 325 LNRFCVQAAVG-HPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLD 402 (479)
Q Consensus 325 ~~~~~~~~~~~-~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~ 402 (479)
+..++..+..+ .++.+++++++.++|+|++|+|++++.+++.. ..+ ++||+++ +.+|+.|+++.+.+. +|.+
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~-~~~--~~~ni~~~~~~s~~e~~~~i~~~---~g~~ 251 (313)
T 3ehe_A 178 IYDFIMKLKRNPEELEILGNGEQNKSYIYISDCVDAMLFGLRGD-ERV--NIFNIGSEDQIKVKRIAEIVCEE---LGLS 251 (313)
T ss_dssp HHHHHHHHHHCTTEEEESTTSCCEECCEEHHHHHHHHHHHTTCC-SSE--EEEECCCSCCEEHHHHHHHHHHH---TTCC
T ss_pred HHHHHHHHHcCCCceEEeCCCCeEEeEEEHHHHHHHHHHHhccC-CCC--ceEEECCCCCeeHHHHHHHHHHH---hCCC
Confidence 66777777776 56778899999999999999999999999833 333 4999998 689999999999998 8888
Q ss_pred ceeeecCCCCc-ccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHhcccCCcC
Q 011707 403 VKTISVPNPRV-EAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSK 459 (479)
Q Consensus 403 ~~~~~~~~~~~-~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (479)
.++...+.... ......+.+|++|+++|||+|+++++++++++++|++.+++....+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~e~l~~~~~~~~~~~~~~~~~ 309 (313)
T 3ehe_A 252 PRFRFTGGDRGWKGDVPVMLLSIEKLKRLGWKPRYNSEEAVRMAVRDLVEDLDEEGHH 309 (313)
T ss_dssp CEEEEC------------CCBCCHHHHHHTCCCSCCHHHHHHHHHHHHHHHHHC----
T ss_pred CceEECCCccCCccccceeccCHHHHHHcCCCCCCCHHHHHHHHHHHHHhCccccccc
Confidence 77766553221 2233446789999988999999999999999999999988765543
|
| >3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-45 Score=358.79 Aligned_cols=322 Identities=22% Similarity=0.264 Sum_probs=251.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+|+||||||+||||++|+++|+++|++|++++|...... +..+.+....+.++.++.+|++|+
T Consensus 4 ~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~----------------~~~~~~~~~~~~~~~~~~~Dl~d~ 67 (341)
T 3enk_A 4 TKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVNSKR----------------EAIARIEKITGKTPAFHETDVSDE 67 (341)
T ss_dssp SSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSSCT----------------HHHHHHHHHHSCCCEEECCCTTCH
T ss_pred CCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCcchH----------------HHHHHHHhhcCCCceEEEeecCCH
Confidence 4689999999999999999999999999999988654211 112222222245789999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcC
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEE 243 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e 243 (479)
+++.++++..++|+||||||.........++ ...+++|+.++.++++++++.+.+ +|||+||.++||.... ++.|
T Consensus 68 ~~~~~~~~~~~~d~vih~A~~~~~~~~~~~~---~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~e 143 (341)
T 3enk_A 68 RALARIFDAHPITAAIHFAALKAVGESVAKP---IEYYRNNLDSLLSLLRVMRERAVK-RIVFSSSATVYGVPERSPIDE 143 (341)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCHHHHHHCH---HHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGBCSCSSSSBCT
T ss_pred HHHHHHHhccCCcEEEECccccccCccccCh---HHHHHHHHHHHHHHHHHHHhCCCC-EEEEEecceEecCCCCCCCCC
Confidence 9999999877899999999976543333332 456889999999999999999887 9999999999987654 5555
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhC-CceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG-IRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g-l~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
+ .+..+.+.|+.+|+++|.+++.++.+++ ++++++||++||||+.... ......+...
T Consensus 144 ~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~lRp~~v~G~~~~~~-------~g~~~~~~~~ 202 (341)
T 3enk_A 144 T--------------FPLSATNPYGQTKLMAEQILRDVEAADPSWRVATLRYFNPVGAHESGL-------IGEDPAGIPN 202 (341)
T ss_dssp T--------------SCCBCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSS-------CCCCCSSSCS
T ss_pred C--------------CCCCCCChhHHHHHHHHHHHHHHhhcCCCceEEEEeeccccCCccccc-------cCCCcccCcc
Confidence 5 3556789999999999999999998876 9999999999999964210 0001122223
Q ss_pred chHHHHHHHHhcC--CCeEEec------CCCceeccccHHHHHHHHHHHHhCC--CCCCCceEEEeCC-CCcCHHHHHHH
Q 011707 323 TALNRFCVQAAVG--HPLTVYG------KGGQTRGYLDIRDTVQCVELAIANP--AQPGEFRVFNQFT-EQFSVNQLAAL 391 (479)
Q Consensus 323 ~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~v~v~Dva~a~~~~~~~~--~~~g~~~~~ni~~-~~~s~~el~~~ 391 (479)
.++. ++.+...+ .++.+++ ++.+.++|+|++|+|++++.+++++ ...++ +||+++ +.+|+.|+++.
T Consensus 203 ~~~~-~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~--~~ni~~~~~~s~~e~~~~ 279 (341)
T 3enk_A 203 NLMP-YVAQVAVGKLEKLRVFGSDYPTPDGTGVRDYIHVVDLARGHIAALDALERRDASL--TVNLGTGRGYSVLEVVRA 279 (341)
T ss_dssp SHHH-HHHHHHHTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHHHTSCE--EEEESCSCCEEHHHHHHH
T ss_pred chHH-HHHHHHhcCCCceEEeCCccCCCCCCeeEeeEEHHHHHHHHHHHHHhhhcCCcce--EEEeCCCCceeHHHHHHH
Confidence 3444 44444444 4677777 7889999999999999999999863 23344 999998 67999999999
Q ss_pred HHHHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhccc
Q 011707 392 VTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDR 455 (479)
Q Consensus 392 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~ 455 (479)
+.+. +|.+.++...+... .....+.+|++|+++ |||+|+++++++++++++|++.+++.
T Consensus 280 i~~~---~g~~~~~~~~~~~~--~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~~ 339 (341)
T 3enk_A 280 FEKA---SGRAVPYELVARRP--GDVAECYANPAAAAETIGWKAERDLERMCADHWRWQENNPRG 339 (341)
T ss_dssp HHHH---HCSCCCEEEECCCT--TCCSEECBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHSTTS
T ss_pred HHHH---hCCCcceeeCCCCC--CCccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhcCcc
Confidence 9998 88888777766543 233456789999986 99999999999999999999886653
|
| >3ko8_A NAD-dependent epimerase/dehydratase; isomerase, UDP-galactose 4-epimerase; HET: NAD; 1.80A {Pyrobaculum calidifontis} SCOP: c.2.1.0 PDB: 3icp_A* 3aw9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=351.18 Aligned_cols=297 Identities=24% Similarity=0.347 Sum_probs=238.7
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||||||||++|+++|+++|++|++++|....... ....+++++.+|++|.+
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----------------------~~~~~~~~~~~Dl~d~~- 56 (312)
T 3ko8_A 1 MRIVVTGGAGFIGSHLVDKLVELGYEVVVVDNLSSGRRE-----------------------FVNPSAELHVRDLKDYS- 56 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSSCCGG-----------------------GSCTTSEEECCCTTSTT-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCCchh-----------------------hcCCCceEEECccccHH-
Confidence 589999999999999999999999999999886542111 01357889999999998
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGY 245 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~ 245 (479)
+.++++ + |+|||+||......... ++...+++|+.|+.+++++|++.+++ +|||+||.++||.... ++.|+
T Consensus 57 ~~~~~~--~-d~vih~A~~~~~~~~~~---~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~vyg~~~~~~~~e~- 128 (312)
T 3ko8_A 57 WGAGIK--G-DVVFHFAANPEVRLSTT---EPIVHFNENVVATFNVLEWARQTGVR-TVVFASSSTVYGDADVIPTPEE- 128 (312)
T ss_dssp TTTTCC--C-SEEEECCSSCSSSGGGS---CHHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCSSSSBCTT-
T ss_pred HHhhcC--C-CEEEECCCCCCchhhhh---CHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeCcHHHhCCCCCCCCCCC-
Confidence 888887 5 99999999654333333 34667899999999999999999987 9999999999998654 55554
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
.+..|.+.|+.+|+++|.+++.+++++|++++++||++||||+... ..+
T Consensus 129 -------------~~~~p~~~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~g~~~~~------------------~~~ 177 (312)
T 3ko8_A 129 -------------EPYKPISVYGAAKAAGEVMCATYARLFGVRCLAVRYANVVGPRLRH------------------GVI 177 (312)
T ss_dssp -------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCS------------------SHH
T ss_pred -------------CCCCCCChHHHHHHHHHHHHHHHHHHhCCCEEEEeeccccCcCCCC------------------ChH
Confidence 3556789999999999999999999999999999999999998642 245
Q ss_pred HHHHHHHhcC-CCeEEecCCCceeccccHHHHHHHHHHHHhC---CCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcC
Q 011707 326 NRFCVQAAVG-HPLTVYGKGGQTRGYLDIRDTVQCVELAIAN---PAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 326 ~~~~~~~~~~-~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~---~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g 400 (479)
..++..+..+ .++.+++++.+.++|+|++|+|++++.++++ +...+ .+||+++ +.+|+.|+++.+.+. +|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~--~~~ni~~~~~~s~~e~~~~i~~~---~g 252 (312)
T 3ko8_A 178 YDFIMKLRRNPNVLEVLGDGTQRKSYLYVRDAVEATLAAWKKFEEMDAPF--LALNVGNVDAVRVLDIAQIVAEV---LG 252 (312)
T ss_dssp HHHHHHHHHCTTEEEEC----CEECEEEHHHHHHHHHHHHHHHHHSCCSE--EEEEESCSSCEEHHHHHHHHHHH---HT
T ss_pred HHHHHHHHhCCCCeEEcCCCCeEEeeEEHHHHHHHHHHHHHhccccCCCC--cEEEEcCCCceeHHHHHHHHHHH---hC
Confidence 6677777776 4677888889999999999999999999987 33344 4999998 679999999999998 88
Q ss_pred CcceeeecCCCC----cccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHH
Q 011707 401 LDVKTISVPNPR----VEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 401 ~~~~~~~~~~~~----~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
.+.++...+... .........+|++|+++ |||+|+++++++++++++|++.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~ 308 (312)
T 3ko8_A 253 LRPEIRLVPSTPDGRGWPGDVKYMTLAVTKLMKLTGWRPTMTSAEAVKKTAEDLAK 308 (312)
T ss_dssp CCCEEEEC----------CCCSEECBCCHHHHHHHCCCCSSCHHHHHHHHHHHHHH
T ss_pred CCCceeecCccccccCCCCCccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Confidence 877777655321 11223456799999966 9999999999999999999875
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-44 Score=355.65 Aligned_cols=304 Identities=22% Similarity=0.248 Sum_probs=248.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..++|+|||||||||||++|+++|+++|++|++++|.... .++.++.+|++
T Consensus 16 ~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----------------------------~~~~~~~~Dl~ 66 (347)
T 4id9_A 16 PRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-----------------------------TGGEEVVGSLE 66 (347)
T ss_dssp -----CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-----------------------------SCCSEEESCTT
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-----------------------------CCccEEecCcC
Confidence 4568899999999999999999999999999999986431 36889999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCC--C-C
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTP--N-I 239 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~--~-~ 239 (479)
|.+++.++++ ++|+|||+|+........ +..++++|+.|+.+++++|++.+++ +|||+||.+|||.. . .
T Consensus 67 d~~~~~~~~~--~~d~vih~A~~~~~~~~~-----~~~~~~~nv~~~~~ll~a~~~~~~~-~~V~~SS~~vyg~~~~~~~ 138 (347)
T 4id9_A 67 DGQALSDAIM--GVSAVLHLGAFMSWAPAD-----RDRMFAVNVEGTRRLLDAASAAGVR-RFVFASSGEVYPENRPEFL 138 (347)
T ss_dssp CHHHHHHHHT--TCSEEEECCCCCCSSGGG-----HHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGTTTTSCSSS
T ss_pred CHHHHHHHHh--CCCEEEECCcccCcchhh-----HHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHHhCCCCCCCC
Confidence 9999999999 899999999976543322 2567899999999999999999987 99999999999973 2 2
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeee-------------cCCCCchh
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVY-------------GVRTDETA 306 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~-------------Gp~~~~~~ 306 (479)
++.|+ .+..+.+.|+.+|+++|.+++.+++++|++++++||++|| ||+..+..
T Consensus 139 ~~~E~--------------~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~~~~~~~~~~~~~~Gp~~~~~~ 204 (347)
T 4id9_A 139 PVTED--------------HPLCPNSPYGLTKLLGEELVRFHQRSGAMETVILRFSHTQDATELLDEDSFFSGPRFFLRP 204 (347)
T ss_dssp SBCTT--------------SCCCCCSHHHHHHHHHHHHHHHHHHHSSSEEEEEEECEEECGGGTTCTTSSSHHHHHBHHH
T ss_pred CcCCC--------------CCCCCCChHHHHHHHHHHHHHHHHHhcCCceEEEccceEeecccccccccccCCCCccccc
Confidence 55555 3556789999999999999999999999999999999999 77643210
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceecc----ccHHHHHHHHHHHHhCCCCCCCceEEEeCC-C
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGY----LDIRDTVQCVELAIANPAQPGEFRVFNQFT-E 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~ 381 (479)
......+ ....++..++..+..++++.+++++.+.++| +|++|+|++++.+++++...++ +|||++ +
T Consensus 205 ~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~~~~~--~~ni~~~~ 276 (347)
T 4id9_A 205 RIHQQQN------FGNAAIAELLQSRDIGEPSHILARNENGRPFRMHITDTRDMVAGILLALDHPEAAGG--TFNLGADE 276 (347)
T ss_dssp HHHHHHH------HTCHHHHHHHHHHCCSSCCEEEEECTTCCBCEECEEEHHHHHHHHHHHHHCGGGTTE--EEEESCSS
T ss_pred ccccccc------cchhHHHHHHHHHHcCCCeEEeCCCCcccCCccCcEeHHHHHHHHHHHhcCcccCCC--eEEECCCC
Confidence 0000000 0124567788888899998999998999999 9999999999999998755555 999998 6
Q ss_pred CcCHHHHHHHHHHHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhc
Q 011707 382 QFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFK 453 (479)
Q Consensus 382 ~~s~~el~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~ 453 (479)
.+|+.|+++.+.+. +|.+.++...+.... .+.+|++|+++ |||+|+++++++++++++|++...
T Consensus 277 ~~s~~e~~~~i~~~---~g~~~~~~~~p~~~~-----~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~ 341 (347)
T 4id9_A 277 PADFAALLPKIAAL---TGLPIVTVDFPGDGV-----YYHTSNERIRNTLGFEAEWTMDRMLEEAATARRQRL 341 (347)
T ss_dssp CEEHHHHHHHHHHH---HCCCEEEEECSSCCC-----BCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred cccHHHHHHHHHHH---hCCCCceeeCCCccc-----ccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhhh
Confidence 79999999999998 888888776654432 56789999987 999999999999999999987644
|
| >2pk3_A GDP-6-deoxy-D-LYXO-4-hexulose reductase; SDR, short-chain dehydrogenase/reductase, rossmann fold, oxidoreductase; HET: A2R GDD; 1.82A {Aneurinibacillus thermoaerophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=347.48 Aligned_cols=300 Identities=22% Similarity=0.234 Sum_probs=241.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.+.|+|||||||||||++|+++|+++|++|++++|.... . . .++.++.+|++|
T Consensus 10 ~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~--~-------------------~------l~~~~~~~Dl~d 62 (321)
T 2pk3_A 10 HGSMRALITGVAGFVGKYLANHLTEQNVEVFGTSRNNEA--K-------------------L------PNVEMISLDIMD 62 (321)
T ss_dssp ---CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCTTC--C-------------------C------TTEEEEECCTTC
T ss_pred cCcceEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcc--c-------------------c------ceeeEEECCCCC
Confidence 457899999999999999999999999999999885431 0 0 157889999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccccCC---CC
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEYGTP---NI 239 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~g~~---~~ 239 (479)
++++.++++..++|+||||||........ .++...+++|+.|+.+++++|++. +.+ +|||+||.++||.. ..
T Consensus 63 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~---~~~~~~~~~Nv~g~~~l~~a~~~~~~~~-~iv~~SS~~v~g~~~~~~~ 138 (321)
T 2pk3_A 63 SQRVKKVISDIKPDYIFHLAAKSSVKDSW---LNKKGTFSTNVFGTLHVLDAVRDSNLDC-RILTIGSSEEYGMILPEES 138 (321)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHT---TCHHHHHHHHHHHHHHHHHHHHHHTCCC-EEEEEEEGGGTBSCCGGGC
T ss_pred HHHHHHHHHhcCCCEEEEcCcccchhhhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEEccHHhcCCCCCCCC
Confidence 99999999855699999999975432222 234667899999999999999876 466 99999999999875 23
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCC
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDG 319 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g 319 (479)
+++|+ .+..+.+.|+.+|+++|.+++.+++++|++++++||++||||+....
T Consensus 139 ~~~E~--------------~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~-------------- 190 (321)
T 2pk3_A 139 PVSEE--------------NQLRPMSPYGVSKASVGMLARQYVKAYGMDIIHTRTFNHIGPGQSLG-------------- 190 (321)
T ss_dssp SBCTT--------------SCCBCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCTT--------------
T ss_pred CCCCC--------------CCCCCCCccHHHHHHHHHHHHHHHHHcCCCEEEEEeCcccCcCCCCC--------------
Confidence 55554 24456889999999999999999988999999999999999986531
Q ss_pred cccchHHHHHHHHhc---C--CCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHH
Q 011707 320 VFGTALNRFCVQAAV---G--HPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVT 393 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~ 393 (479)
.++..++..+.. | .++.+++++.+.++|+|++|+|++++.+++++. .|+ +||+++ ..+|+.|+++.+.
T Consensus 191 ---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~-~g~--~~~i~~~~~~s~~e~~~~i~ 264 (321)
T 2pk3_A 191 ---FVTQDFAKQIVDIEMEKQEPIIKVGNLEAVRDFTDVRDIVQAYWLLSQYGK-TGD--VYNVCSGIGTRIQDVLDLLL 264 (321)
T ss_dssp ---SHHHHHHHHHHHHHTTSSCSEEEESCSSCEEEEEEHHHHHHHHHHHHHHCC-TTC--EEEESCSCEEEHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHhcCCCCCeEEeCCCCcEEeeEEHHHHHHHHHHHHhCCC-CCC--eEEeCCCCCeeHHHHHHHHH
Confidence 234556666555 7 577888888899999999999999999998763 354 999998 5799999999999
Q ss_pred HHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHH
Q 011707 394 KAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 394 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
+. +|.+.++...|..........+.+|++|+++ |||+|+++++++++++++|++.
T Consensus 265 ~~---~g~~~~~~~~p~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~ 320 (321)
T 2pk3_A 265 AM---ANVKIDTELNPLQLRPSEVPTLIGSNKRLKDSTGWKPRIPLEKSLFEILQSYRQ 320 (321)
T ss_dssp HH---SSSCCEEEECGGGCCSSCCSBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHT
T ss_pred HH---hCCCCceeeccccCCCcccchhccCHHHHHHHcCCCcCCCHHHHHHHHHHHHhc
Confidence 98 8887776665521122233456789999987 9999999999999999999864
|
| >2hun_A 336AA long hypothetical DTDP-glucose 4,6-dehydrat; rossmann fold, structural genomics, NPPSFA; HET: NAD; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=346.07 Aligned_cols=309 Identities=20% Similarity=0.293 Sum_probs=240.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
++|+||||||+||||++|+++|+++| ++|++++|....... +.+..+. ...++.++.+|++
T Consensus 2 ~~m~vlVTGatG~iG~~l~~~L~~~g~~~~V~~~~r~~~~~~~---------------~~~~~~~--~~~~~~~~~~Dl~ 64 (336)
T 2hun_A 2 HSMKLLVTGGMGFIGSNFIRYILEKHPDWEVINIDKLGYGSNP---------------ANLKDLE--DDPRYTFVKGDVA 64 (336)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCG---------------GGGTTTT--TCTTEEEEECCTT
T ss_pred CCCeEEEECCCchHHHHHHHHHHHhCCCCEEEEEecCcccCch---------------hHHhhhc--cCCceEEEEcCCC
Confidence 35789999999999999999999997 899999885421100 0011110 1357899999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCC-CCC
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN-IDI 241 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~-~~~ 241 (479)
|.+++.+++. ++|+||||||........ .++..++++|+.|+.+++++|.+.+..++|||+||.++||... .++
T Consensus 65 d~~~~~~~~~--~~d~vih~A~~~~~~~~~---~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~ 139 (336)
T 2hun_A 65 DYELVKELVR--KVDGVVHLAAESHVDRSI---SSPEIFLHSNVIGTYTLLESIRRENPEVRFVHVSTDEVYGDILKGSF 139 (336)
T ss_dssp CHHHHHHHHH--TCSEEEECCCCCCHHHHH---HCTHHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEEGGGGCCCSSSCB
T ss_pred CHHHHHHHhh--CCCEEEECCCCcChhhhh---hCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEeccHHHHCCCCCCCc
Confidence 9999999996 899999999975432222 2345678999999999999999887534999999999998763 245
Q ss_pred cCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 242 EEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
.|+ .+..+.+.|+.+|+++|.+++.++.++|++++++||++||||+..+
T Consensus 140 ~E~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~----------------- 188 (336)
T 2hun_A 140 TEN--------------DRLMPSSPYSATKAASDMLVLGWTRTYNLNASITRCTNNYGPYQFP----------------- 188 (336)
T ss_dssp CTT--------------BCCCCCSHHHHHHHHHHHHHHHHHHHTTCEEEEEEECEEESTTCCT-----------------
T ss_pred CCC--------------CCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeeeeeCcCCCc-----------------
Confidence 554 2445678999999999999999999899999999999999998643
Q ss_pred cchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcC
Q 011707 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g 400 (479)
..++..++..+..++++.+++++.+.++|+|++|+|++++.++++.. .|+ +||+++ ..+|+.|+++.+.+. +|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~-~g~--~~~v~~~~~~s~~e~~~~i~~~---~g 262 (336)
T 2hun_A 189 EKLIPKTIIRASLGLKIPIYGTGKNVRDWLYVEDHVRAIELVLLKGE-SRE--IYNISAGEEKTNLEVVKIILRL---MG 262 (336)
T ss_dssp TSHHHHHHHHHHTTCCEEEETC---CEEEEEHHHHHHHHHHHHHHCC-TTC--EEEECCSCEECHHHHHHHHHHH---TT
T ss_pred CchHHHHHHHHHcCCCceEeCCCCceeeeEEHHHHHHHHHHHHhCCC-CCC--EEEeCCCCcccHHHHHHHHHHH---hC
Confidence 12456777788888888888988899999999999999999998653 455 999999 569999999999998 77
Q ss_pred Ccce-eeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 401 LDVK-TISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 401 ~~~~-~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
.+.+ +...+... .....+.+|++|+++ |||+|+++++++++++++|++...+
T Consensus 263 ~~~~~~~~~~~~~--~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~ 316 (336)
T 2hun_A 263 KGEELIELVEDRP--GHDLRYSLDSWKITRDLKWRPKYTFDEGIKKTIDWYLKNEW 316 (336)
T ss_dssp CCSTTEEEECCCT--TCCCCCCBCCHHHHHHHCCCCSSCHHHHHHHHHHHHHHTHH
T ss_pred CCcccccccCCCC--CchhhhcCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCcc
Confidence 6543 33333221 122345689999987 9999999999999999999986543
|
| >1sb8_A WBPP; epimerase, 4-epimerase, UDP-galnac, UDP-GLCNAC, SDR, G SYK, UDP, N-acetylglucosamine, N- acetylgalactosamine, UDP-GLC, isomerase; HET: NAD UD2; 2.10A {Pseudomonas aeruginosa} SCOP: c.2.1.2 PDB: 1sb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=351.13 Aligned_cols=319 Identities=19% Similarity=0.224 Sum_probs=247.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+|||||||||||++|+++|+++|++|++++|....... .+....+.+......++.++.+|++|
T Consensus 25 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~Dl~d 92 (352)
T 1sb8_A 25 AQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQR------------NLDEVRSLVSEKQWSNFKFIQGDIRN 92 (352)
T ss_dssp HSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHH------------HHHHHHHHSCHHHHTTEEEEECCTTS
T ss_pred ccCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCccchh------------hHHHHhhhcccccCCceEEEECCCCC
Confidence 357899999999999999999999999999999986432100 00000111110012478999999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCc
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIE 242 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~ 242 (479)
.+++.++++ ++|+|||+||......... ++...+++|+.|+.+++++|++.+++ +|||+||.++|+.... ++.
T Consensus 93 ~~~~~~~~~--~~d~vih~A~~~~~~~~~~---~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~ 166 (352)
T 1sb8_A 93 LDDCNNACA--GVDYVLHQAALGSVPRSIN---DPITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKV 166 (352)
T ss_dssp HHHHHHHHT--TCSEEEECCSCCCHHHHHH---CHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBC
T ss_pred HHHHHHHhc--CCCEEEECCcccCchhhhh---CHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHhcCCCCCCCCC
Confidence 999999998 8999999999754322222 34567899999999999999999887 9999999999987643 555
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|+ .+..+.+.|+.+|+++|.+++.+++++|++++++||++||||+..+. +.+.
T Consensus 167 E~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilRp~~v~G~~~~~~-------------~~~~ 219 (352)
T 1sb8_A 167 ED--------------TIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDPN-------------GAYA 219 (352)
T ss_dssp TT--------------CCCCCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCCC-------------STTC
T ss_pred CC--------------CCCCCCChhHHHHHHHHHHHHHHHHHcCCCEEEEEECceeCcCCCCC-------------cchh
Confidence 54 24466889999999999999999988999999999999999986431 1123
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC-CCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcC
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP-AQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~-~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g 400 (479)
.++..++..+..+.++.+++++++.++|+|++|+|++++.++.+. ...+ ++||+++ +.+|+.|+++.+.+.++..|
T Consensus 220 ~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~--~~~ni~~~~~~s~~e~~~~i~~~~~~~g 297 (352)
T 1sb8_A 220 AVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARN--QVYNIAVGGRTSLNQLFFALRDGLAENG 297 (352)
T ss_dssp CHHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGGCS--EEEEESCSCCEEHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHCCCCcEEeCCCCceEeeEEHHHHHHHHHHHHhccccCCC--ceEEeCCCCCccHHHHHHHHHHHHHhcC
Confidence 456777888888998888898899999999999999999999863 2334 4999998 67999999999999832227
Q ss_pred Cccee--eecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHH
Q 011707 401 LDVKT--ISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 401 ~~~~~--~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
.+.+. ...+.. ........+|++|+++ |||+|+++++++++++++|++.
T Consensus 298 ~~~~~~~~~~~~~--~~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~ 349 (352)
T 1sb8_A 298 VSYHREPVYRDFR--EGDVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIM 349 (352)
T ss_dssp CCCCCCCEEECCC--TTCCSBCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCceecCCC--ccchhhccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 76552 222221 1123345689999987 9999999999999999999875
|
| >2p5y_A UDP-glucose 4-epimerase; TTHA0591, structural genomics, PSI; HET: NAD; 1.92A {Thermus thermophilus HB8} PDB: 2p5u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-43 Score=344.43 Aligned_cols=300 Identities=26% Similarity=0.367 Sum_probs=242.4
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+||||||+||||++++++|+++|++|++++|....... .+ ..++.++.+|++|+++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~-------------------~~----~~~~~~~~~Dl~~~~~ 57 (311)
T 2p5y_A 1 MRVLVTGGAGFIGSHIVEDLLARGLEVAVLDNLATGKRE-------------------NV----PKGVPFFRVDLRDKEG 57 (311)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEECCCSSCCGG-------------------GS----CTTCCEECCCTTCHHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCCcCchh-------------------hc----ccCeEEEECCCCCHHH
Confidence 579999999999999999999999999999874321100 00 1357789999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecc-ccccC-CC-CCCcC
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTM-GEYGT-PN-IDIEE 243 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~-~v~g~-~~-~~~~e 243 (479)
+.++++..++|+|||+|+......... ++...+++|+.|+.+++++|++.+++ +|||+||. ++||. .. .+..|
T Consensus 58 ~~~~~~~~~~d~vi~~a~~~~~~~~~~---~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~~g~~~~~~~~~E 133 (311)
T 2p5y_A 58 VERAFREFRPTHVSHQAAQASVKVSVE---DPVLDFEVNLLGGLNLLEACRQYGVE-KLVFASTGGAIYGEVPEGERAEE 133 (311)
T ss_dssp HHHHHHHHCCSEEEECCSCCCHHHHHH---CHHHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEHHHHHCCCCTTCCBCT
T ss_pred HHHHHHhcCCCEEEECccccCchhhhh---CHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCChhhcCCCCCCCCcCC
Confidence 999998667999999999754322222 34567899999999999999998877 99999998 89986 32 24455
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
+ .+..+.+.|+.+|+++|.+++.+++++|++++++||++||||+..... . ..
T Consensus 134 ~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~Gp~~~~~~-------------~-~~ 185 (311)
T 2p5y_A 134 T--------------WPPRPKSPYAASKAAFEHYLSVYGQSYGLKWVSLRYGNVYGPRQDPHG-------------E-AG 185 (311)
T ss_dssp T--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCSSS-------------T-TH
T ss_pred C--------------CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEEeeccccCcCCCCCC-------------c-Cc
Confidence 4 244567899999999999999999889999999999999999864321 0 23
Q ss_pred hHHHHHHHHhcCCCeEEe-----cCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhh
Q 011707 324 ALNRFCVQAAVGHPLTVY-----GKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGE 397 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~ 397 (479)
++..++..+..+.++.++ +++.+.++|+|++|+|++++.+++++ ++ +||+++ +.+|+.|+++.+.+.
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~---~~--~~~i~~~~~~s~~e~~~~i~~~-- 258 (311)
T 2p5y_A 186 VVAIFAERVLKGLPVTLYARKTPGDEGCVRDYVYVGDVAEAHALALFSL---EG--IYNVGTGEGHTTREVLMAVAEA-- 258 (311)
T ss_dssp HHHHHHHHHHHTCCEEEECSSSTTSCCCEECEEEHHHHHHHHHHHHHHC---CE--EEEESCSCCEEHHHHHHHHHHH--
T ss_pred HHHHHHHHHHcCCCcEEEecccCCCCCeEEeeEEHHHHHHHHHHHHhCC---CC--EEEeCCCCCccHHHHHHHHHHH--
Confidence 456777778888888888 88888999999999999999999864 44 999998 679999999999998
Q ss_pred hcCCcceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHH
Q 011707 398 KLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 398 ~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
+|.+.++...+.... ......+|++|+++|||+|+++++++++++++|++.
T Consensus 259 -~g~~~~~~~~~~~~~--~~~~~~~d~~k~~~lg~~p~~~~~~~l~~~~~~~~~ 309 (311)
T 2p5y_A 259 -AGKAPEVQPAPPRPG--DLERSVLSPLKLMAHGWRPKVGFQEGIRLTVDHFRG 309 (311)
T ss_dssp -HTCCCCEEEECCCTT--CCSBCCBCCHHHHTTTCCCSSCHHHHHHHHHHHHHT
T ss_pred -hCCCCCceeCCCCcc--chhhccCCHHHHHHCCCCCCCCHHHHHHHHHHHHHh
Confidence 887777766654322 224567899999779999999999999999998853
|
| >2c20_A UDP-glucose 4-epimerase; carbohydrate metabolism, galactose metabolism, isomerase, NAD, spine; HET: NAD; 2.7A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-43 Score=344.31 Aligned_cols=316 Identities=22% Similarity=0.303 Sum_probs=243.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
||+|||||||||||++|+++|+++|++|++++|...... +. + ..+++++.+|++|.+
T Consensus 1 M~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~-------------------~~---~-~~~~~~~~~D~~~~~ 57 (330)
T 2c20_A 1 MNSILICGGAGYIGSHAVKKLVDEGLSVVVVDNLQTGHE-------------------DA---I-TEGAKFYNGDLRDKA 57 (330)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCG-------------------GG---S-CTTSEEEECCTTCHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCCCcCch-------------------hh---c-CCCcEEEECCCCCHH
Confidence 478999999999999999999999999999987543210 00 1 126889999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEG 244 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~ 244 (479)
++.++++..++|+|||+||......... ++..++++|+.|+.+++++|++.+++ +|||+||.++|+.... +++|+
T Consensus 58 ~~~~~~~~~~~d~vih~a~~~~~~~~~~---~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~~~~~~~~~E~ 133 (330)
T 2c20_A 58 FLRDVFTQENIEAVMHFAADSLVGVSME---KPLQYYNNNVYGALCLLEVMDEFKVD-KFIFSSTAATYGEVDVDLITEE 133 (330)
T ss_dssp HHHHHHHHSCEEEEEECCCCCCHHHHHH---SHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGGCSCSSSSBCTT
T ss_pred HHHHHHhhcCCCEEEECCcccCcccccc---CHHHHHHHHhHHHHHHHHHHHHcCCC-EEEEeCCceeeCCCCCCCCCcC
Confidence 9999998667999999999754322222 34567899999999999999998887 9999999999987543 55554
Q ss_pred ceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCC-CCcccc
Q 011707 245 YITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDY-DGVFGT 323 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~-~g~~~~ 323 (479)
.+..+.+.|+.+|+++|.+++.+++++|++++++||++||||+.... .++ .+....
T Consensus 134 --------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~---------~g~~~~~~~~ 190 (330)
T 2c20_A 134 --------------TMTNPTNTYGETKLAIEKMLHWYSQASNLRYKIFRYFNVAGATPNGI---------IGEDHRPETH 190 (330)
T ss_dssp --------------SCCCCSSHHHHHHHHHHHHHHHHHHTSSCEEEEEECSEEECCCTTCS---------SCCCCSSCCS
T ss_pred --------------CCCCCCChHHHHHHHHHHHHHHHHHHhCCcEEEEecCcccCCCCcCc---------cccccccccc
Confidence 24466899999999999999999988899999999999999963210 000 001123
Q ss_pred hHHHHHHHHhc-CCCeEEec------CCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHH
Q 011707 324 ALNRFCVQAAV-GHPLTVYG------KGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKA 395 (479)
Q Consensus 324 ~~~~~~~~~~~-~~~~~~~~------~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~ 395 (479)
++..++..... +.++.+++ ++++.++|+|++|+|++++.+++++...+...+||+++ +.+|+.|+++.+.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~ 270 (330)
T 2c20_A 191 LIPLVLQVALGQREKIMMFGDDYNTPDGTCIRDYIHVEDLVAAHFLGLKDLQNGGESDFYNLGNGNGFSVKEIVDAVREV 270 (330)
T ss_dssp HHHHHHHHHTTSSSCEEEECSCCSSSSSSCEECEEEHHHHHHHHHHHHHHHHTTCCCEEEECCCTTCBCHHHHHHHHHHH
T ss_pred hHHHHHHHHhhcCCCeEEeCCccccCCCceeEeeEeHHHHHHHHHHHHhccccCCCCCeEEeCCCCCccHHHHHHHHHHH
Confidence 44455444443 34677776 67788999999999999999998653322234999998 679999999999998
Q ss_pred hhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccc-cHHHHHHHHHHHHHHhcccC
Q 011707 396 GEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHI-LSDSLLDSLLNFAIQFKDRV 456 (479)
Q Consensus 396 ~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~-~~~~~~~~~~~~~~~~~~~~ 456 (479)
+|.++++...+.... ....+.+|++|+++ |||+|++ +++++++++++|++...+.+
T Consensus 271 ---~g~~~~~~~~~~~~~--~~~~~~~d~~k~~~~lG~~p~~~~l~~~l~~~~~~~~~~~~~~ 328 (330)
T 2c20_A 271 ---TNHEIPAEVAPRRAG--DPARLVASSQKAKEKLGWDPRYVNVKTIIEHAWNWHQKQPNGY 328 (330)
T ss_dssp ---TTSCCCEEEECCCSS--CCSEECBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHCSSCC
T ss_pred ---hCCCCceeeCCCCCC--cccccccCHHHHHHHhCCCCccCCHHHHHHHHHHHHHHhhhcc
Confidence 888777666554322 23356789999986 9999999 99999999999998766543
|
| >3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=360.34 Aligned_cols=319 Identities=18% Similarity=0.186 Sum_probs=247.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.+++|+|||||||||||++|+++|+++ |++|++++|....... + ....+++++.+|+
T Consensus 21 ~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~--------------------~--~~~~~v~~~~~Dl 78 (372)
T 3slg_A 21 SMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMDMQTDRLGD--------------------L--VKHERMHFFEGDI 78 (372)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEESCCTTTGG--------------------G--GGSTTEEEEECCT
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEeCChhhhhh--------------------h--ccCCCeEEEeCcc
Confidence 456889999999999999999999998 9999999986432110 0 0125899999999
Q ss_pred C-ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-
Q 011707 162 C-DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI- 239 (479)
Q Consensus 162 ~-d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~- 239 (479)
+ |.+.+.++++ ++|+|||+||.........++ ...+++|+.|+.+++++|++.+ + +|||+||.++||....
T Consensus 79 ~~d~~~~~~~~~--~~d~Vih~A~~~~~~~~~~~~---~~~~~~nv~~~~~ll~a~~~~~-~-~~v~~SS~~vyg~~~~~ 151 (372)
T 3slg_A 79 TINKEWVEYHVK--KCDVILPLVAIATPATYVKQP---LRVFELDFEANLPIVRSAVKYG-K-HLVFPSTSEVYGMCADE 151 (372)
T ss_dssp TTCHHHHHHHHH--HCSEEEECBCCCCHHHHHHCH---HHHHHHHTTTTHHHHHHHHHHT-C-EEEEECCGGGGBSCCCS
T ss_pred CCCHHHHHHHhc--cCCEEEEcCccccHHHHhhCH---HHHHHHHHHHHHHHHHHHHHhC-C-cEEEeCcHHHhCCCCCC
Confidence 9 9999999998 799999999976644333333 4577999999999999999998 5 9999999999998654
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCC
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDG 319 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g 319 (479)
++.|+..+.... ....|.+.|+.+|+++|++++.++++ |++++++||++||||+.++. .++.+
T Consensus 152 ~~~e~~~~~~~~-------p~~~p~~~Y~~sK~~~E~~~~~~~~~-g~~~~ilRp~~v~G~~~~~~---------~~~~~ 214 (372)
T 3slg_A 152 QFDPDASALTYG-------PINKPRWIYACSKQLMDRVIWGYGME-GLNFTLFRPFNWIGPGLDSI---------YTPKE 214 (372)
T ss_dssp SBCTTTCCEEEC-------CTTCTTHHHHHHHHHHHHHHHHHHTT-TCEEEEEEECSEECSSCCCT---------TCSBS
T ss_pred CCCccccccccC-------CCCCCCCcHHHHHHHHHHHHHHHHHC-CCCEEEEccccccCCCcccc---------ccccc
Confidence 555653221110 11246789999999999999999887 99999999999999986531 01111
Q ss_pred cccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC--CCCCceEEEeCC-C-CcCHHHHHHHHHHH
Q 011707 320 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA--QPGEFRVFNQFT-E-QFSVNQLAALVTKA 395 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~g~~~~~ni~~-~-~~s~~el~~~i~~~ 395 (479)
....++..++..+..++++.+++++++.++|+|++|+|++++.+++++. ..++ +||+++ + .+|+.|+++.+.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~--~~ni~~~~~~~s~~e~~~~i~~~ 292 (372)
T 3slg_A 215 GSSRVVTQFLGHIVRGENISLVDGGSQKRAFTYVDDGISALMKIIENSNGVATGK--IYNIGNPNNNFSVRELANKMLEL 292 (372)
T ss_dssp CSCHHHHHHHHHHHHTCCEEEGGGGCCEEECEEHHHHHHHHHHHHHCGGGTTTTE--EEEECCTTCEEEHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHcCCCcEEeCCCceEEEEEEHHHHHHHHHHHHhcccCcCCCc--eEEeCCCCCCccHHHHHHHHHHH
Confidence 2244678889999999999999988999999999999999999999875 3444 999999 5 79999999999998
Q ss_pred hhhcCCcceeeecCCCC-------------cccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHh
Q 011707 396 GEKLGLDVKTISVPNPR-------------VEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 396 ~~~~g~~~~~~~~~~~~-------------~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~ 452 (479)
+|.++++...+... .........+|++|+++ |||+|+++++++++++++|++..
T Consensus 293 ---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~ 360 (372)
T 3slg_A 293 ---AAEFPEYADSAKRVKLVETTSGAYYGNGYQDVQNRVPKIENTMQELGWAPQFTFDDALRQIFEAYRGH 360 (372)
T ss_dssp ---HHHCTTTHHHHHTCCEEEC-------------CCCCBCCHHHHHHHTCCCCCCHHHHHHHHHHHHTTC
T ss_pred ---hCCCcccccccccceeeeccccccccCCccccceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence 55443322211100 01233455689999987 99999999999999999998653
|
| >4b8w_A GDP-L-fucose synthase; oxidoreductase; HET: NAP GDP; 2.75A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=344.22 Aligned_cols=306 Identities=16% Similarity=0.124 Sum_probs=242.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+|||||||||||++|+++|+++|+ +... ....++.+.+|++
T Consensus 3 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~------~~~~----------------------------~~~~~~~~~~D~~ 48 (319)
T 4b8w_A 3 YFQSMRILVTGGSGLVGKAIQKVVADGAG------LPGE----------------------------DWVFVSSKDADLT 48 (319)
T ss_dssp CCCCCEEEEETCSSHHHHHHHHHHHTTTC------CTTC----------------------------EEEECCTTTCCTT
T ss_pred cccCCeEEEECCCcHHHHHHHHHHHhcCC------cccc----------------------------cccccCceecccC
Confidence 35689999999999999999999999998 1000 0024555679999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CC
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DI 241 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~ 241 (479)
|++++.++++..++|+|||+|+...... ....++...+++|+.|+.+++++|++.+++ +|||+||.++||.... ++
T Consensus 49 d~~~~~~~~~~~~~d~Vih~A~~~~~~~--~~~~~~~~~~~~nv~gt~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~ 125 (319)
T 4b8w_A 49 DTAQTRALFEKVQPTHVIHLAAMVGGLF--RNIKYNLDFWRKNVHMNDNVLHSAFEVGAR-KVVSCLSTCIFPDKTTYPI 125 (319)
T ss_dssp SHHHHHHHHHHSCCSEEEECCCCCCCHH--HHTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGSCSSCCSSB
T ss_pred CHHHHHHHHhhcCCCEEEECceeccccc--ccccCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEEcchhhcCCCCCCCc
Confidence 9999999999667999999999754211 112233567899999999999999999987 9999999999997654 66
Q ss_pred cCCceeecCCCCCCCCCCCCCCCc-hhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCc
Q 011707 242 EEGYITINHNGRTDTLPYPKQASS-FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~-~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~ 320 (479)
.|+.... .+..|.+ .|+.+|+++|++++.+++++|++++++||++||||+..+.. .
T Consensus 126 ~E~~~~~----------~~~~p~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilRp~~v~Gp~~~~~~-------------~ 182 (319)
T 4b8w_A 126 DETMIHN----------GPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNI-------------E 182 (319)
T ss_dssp CGGGGGB----------SCCCSSSHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECTTCCCCT-------------T
T ss_pred ccccccc----------CCCCCCcchHHHHHHHHHHHHHHHHHhhCCCEEEEeeccccCCCCCCCC-------------c
Confidence 6653110 1233444 69999999999999999999999999999999999875321 1
Q ss_pred ccchHHHHHHH----HhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHH
Q 011707 321 FGTALNRFCVQ----AAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKA 395 (479)
Q Consensus 321 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~ 395 (479)
.+.++..++.. +..++++.+++++++.++|+|++|+|++++.+++++... ...+||+++ +.+|+.|+++.+.+.
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~-~~~~~ni~~~~~~s~~e~~~~i~~~ 261 (319)
T 4b8w_A 183 DGHVLPGLIHKVHLAKSSGSALTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEV-EPIILSVGEEDEVSIKEAAEAVVEA 261 (319)
T ss_dssp TSCHHHHHHHHHHHHHHHTCCEEEESCSCCEECEEEHHHHHHHHHHHHHHCCCS-SCEEECCCGGGCEEHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHhccCCceEEeCCCCeeEEEEeHHHHHHHHHHHHhccccC-CceEEEecCCCceeHHHHHHHHHHH
Confidence 12344555555 788999999999999999999999999999999875432 225999998 789999999999998
Q ss_pred hhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 396 GEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 396 ~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
+|.+.++...+.... ....+.+|++|+++ |||+|.++++++++++++|++...+
T Consensus 262 ---~g~~~~~~~~~~~~~--~~~~~~~d~~k~~~~lg~~p~~~~~~~l~~~~~~~~~~~~ 316 (319)
T 4b8w_A 262 ---MDFHGEVTFDTTKSD--GQFKKTASNSKLRTYLPDFRFTPFKQAVKETCAWFTDNYE 316 (319)
T ss_dssp ---TTCCSCEEEETTSCC--CCSCCCBCCHHHHHHCTTCCCCCHHHHHHHHHHHHHHSCS
T ss_pred ---hCCCCcEEeCCCCCc--CcccccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 888887777664322 23345699999988 9999999999999999999987654
|
| >1ek6_A UDP-galactose 4-epimerase; short-chain dehydrogenase, galactosemia, isomerase; HET: NAI UPG; 1.50A {Homo sapiens} SCOP: c.2.1.2 PDB: 1ek5_A* 1hzj_A* 1i3k_A* 1i3l_A* 1i3m_A* 1i3n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=345.05 Aligned_cols=329 Identities=25% Similarity=0.305 Sum_probs=246.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+|||||||||||++|+++|+++|++|++++|..+...+.. ...+.++.+....+.++.++.+|++|.+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~r~~~----------~~~~~~~~l~~~~~~~~~~~~~D~~~~~ 71 (348)
T 1ek6_A 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGGG----------SLPESLRRVQELTGRSVEFEEMDILDQG 71 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCSS----------SSBHHHHHHHHHHTCCCEEEECCTTCHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCccccccc----------ccHHHHHHHHhccCCceEEEECCCCCHH
Confidence 579999999999999999999999999999988543200000 0001111221112357899999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEG 244 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~ 244 (479)
++.++++..++|+|||+||......... ++..++++|+.|+.+++++|++.+++ +|||+||.++||.... ++.|+
T Consensus 72 ~~~~~~~~~~~d~vih~A~~~~~~~~~~---~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~E~ 147 (348)
T 1ek6_A 72 ALQRLFKKYSFMAVIHFAGLKAVGESVQ---KPLDYYRVNLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQYLPLDEA 147 (348)
T ss_dssp HHHHHHHHCCEEEEEECCSCCCHHHHHH---CHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGGCSCSSSSBCTT
T ss_pred HHHHHHHhcCCCEEEECCCCcCccchhh---chHHHHHHHHHHHHHHHHHHHHhCCC-EEEEECcHHHhCCCCCCCcCCC
Confidence 9999998667999999999754332222 33567899999999999999998877 9999999999987543 55554
Q ss_pred ceeecCCCCCCCCCCCCCC-CchhhhhhHHHHHHHHHHHHHhC--CceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 245 YITINHNGRTDTLPYPKQA-SSFYHLSKVHDSHNIAFTCKAWG--IRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~~~E~~~~~~~~~~g--l~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
.+..| .+.|+.+|+++|.+++.++++ + ++++++||++||||+.... -.....+..
T Consensus 148 --------------~~~~p~~~~Y~~sK~~~e~~~~~~~~~-~~~~~~~~lR~~~v~G~~~~g~-------~g~~~~~~~ 205 (348)
T 1ek6_A 148 --------------HPTGGCTNPYGKSKFFIEEMIRDLCQA-DKTWNAVLLRYFNPTGAHASGC-------IGEDPQGIP 205 (348)
T ss_dssp --------------SCCCCCSSHHHHHHHHHHHHHHHHHHH-CTTCEEEEEEECEEECCCTTSS-------CCCCCSSSC
T ss_pred --------------CCCCCCCCchHHHHHHHHHHHHHHHhc-CCCcceEEEeeccccCCCcccc-------cCcCcccch
Confidence 23344 789999999999999999887 5 9999999999999953110 000001111
Q ss_pred cchHHHHHHHHh-cCCCeEEec------CCCceeccccHHHHHHHHHHHHhCCC-CCCCceEEEeCC-CCcCHHHHHHHH
Q 011707 322 GTALNRFCVQAA-VGHPLTVYG------KGGQTRGYLDIRDTVQCVELAIANPA-QPGEFRVFNQFT-EQFSVNQLAALV 392 (479)
Q Consensus 322 ~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~v~v~Dva~a~~~~~~~~~-~~g~~~~~ni~~-~~~s~~el~~~i 392 (479)
..++..++..+. .+.++.+++ ++++.++|+|++|+|++++.+++++. ..+ .++||+++ +.+|+.|+++.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g-~~~~ni~~~~~~s~~e~~~~i 284 (348)
T 1ek6_A 206 NNLMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCG-CRIYNLGTGTGYSVLQMVQAM 284 (348)
T ss_dssp CSHHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCC-EEEEEECCSCCEEHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCCeEEeCCcccCCCCceEEeeEEHHHHHHHHHHHHhcccccCC-ceEEEeCCCCCccHHHHHHHH
Confidence 335555665555 566788876 57788999999999999999998653 223 14999998 679999999999
Q ss_pred HHHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcccC
Q 011707 393 TKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDRV 456 (479)
Q Consensus 393 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
.+. +|.++++...+.... ....+.+|++|+++ |||+|+++++++++++++|++...+.+
T Consensus 285 ~~~---~g~~~~~~~~~~~~~--~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~~~~ 344 (348)
T 1ek6_A 285 EKA---SGKKIPYKVVARREG--DVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGF 344 (348)
T ss_dssp HHH---HCSCCCEEEECCCTT--CCSEECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTTCS
T ss_pred HHH---hCCCCceeeCCCCCc--cchhhccCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhccccc
Confidence 998 787777666554322 23356689999977 999999999999999999998765543
|
| >3sxp_A ADP-L-glycero-D-mannoheptose-6-epimerase; rossman fold, NAD binding, isomerase; HET: NAD; 2.55A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-43 Score=350.63 Aligned_cols=315 Identities=19% Similarity=0.200 Sum_probs=246.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHh--CCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSN--KGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~--~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.+++|+||||||+||||++|+++|++ .|++|++++|............. .........+.++.++.+|
T Consensus 7 ~~~~~~vlVTGatG~IG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~D 76 (362)
T 3sxp_A 7 ELENQTILITGGAGFVGSNLAFHFQENHPKAKVVVLDKFRSNTLFSNNRPS----------SLGHFKNLIGFKGEVIAAD 76 (362)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHHCTTSEEEEEECCCCC-------CC----------CCCCGGGGTTCCSEEEECC
T ss_pred hcCCCEEEEECCCCHHHHHHHHHHHhhCCCCeEEEEECCCccccccccchh----------hhhhhhhccccCceEEECC
Confidence 45789999999999999999999999 99999999986541110000000 0111122234578999999
Q ss_pred cCChHHHHHH-hhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC
Q 011707 161 ICDFEFLSES-FKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI 239 (479)
Q Consensus 161 l~d~~~~~~~-~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~ 239 (479)
++|+++++++ .. ++|+||||||.... ...++...+++|+.|+.+++++|++.++ +|||+||.++||....
T Consensus 77 l~d~~~~~~~~~~--~~D~vih~A~~~~~-----~~~~~~~~~~~Nv~gt~~ll~aa~~~~~--~~V~~SS~~vyg~~~~ 147 (362)
T 3sxp_A 77 INNPLDLRRLEKL--HFDYLFHQAAVSDT-----TMLNQELVMKTNYQAFLNLLEIARSKKA--KVIYASSAGVYGNTKA 147 (362)
T ss_dssp TTCHHHHHHHTTS--CCSEEEECCCCCGG-----GCCCHHHHHHHHTHHHHHHHHHHHHTTC--EEEEEEEGGGGCSCCS
T ss_pred CCCHHHHHHhhcc--CCCEEEECCccCCc-----cccCHHHHHHHHHHHHHHHHHHHHHcCC--cEEEeCcHHHhCCCCC
Confidence 9999999998 55 89999999996442 2233467889999999999999999874 5999999999998776
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCC
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDG 319 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g 319 (479)
+..|+ .+..|.+.|+.+|+++|.+++.++.+ ++++++||++||||+..+. +
T Consensus 148 ~~~E~--------------~~~~p~~~Y~~sK~~~E~~~~~~~~~--~~~~~lR~~~v~Gp~~~~~-------------~ 198 (362)
T 3sxp_A 148 PNVVG--------------KNESPENVYGFSKLCMDEFVLSHSND--NVQVGLRYFNVYGPREFYK-------------E 198 (362)
T ss_dssp SBCTT--------------SCCCCSSHHHHHHHHHHHHHHHTTTT--SCEEEEEECSEESTTCGGG-------------G
T ss_pred CCCCC--------------CCCCCCChhHHHHHHHHHHHHHHhcc--CCEEEEEeCceeCcCCCCC-------------C
Confidence 66665 35577899999999999999887765 8999999999999987542 1
Q ss_pred cccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhh
Q 011707 320 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEK 398 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~ 398 (479)
.+..++..++..+..+.++.+++++.+.++|+|++|+|++++.+++++. .| +|||++ +.+|+.|+++.+.+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~ai~~~~~~~~-~g---~~~i~~~~~~s~~e~~~~i~~~--- 271 (362)
T 3sxp_A 199 KTASMVLQLALGAMAFKEVKLFEFGEQLRDFVYIEDVIQANVKAMKAQK-SG---VYNVGYSQARSYNEIVSILKEH--- 271 (362)
T ss_dssp GGSCHHHHHHHHHHTTSEEECSGGGCCEEECEEHHHHHHHHHHHTTCSS-CE---EEEESCSCEEEHHHHHHHHHHH---
T ss_pred cchhHHHHHHHHHHhCCCeEEECCCCeEEccEEHHHHHHHHHHHHhcCC-CC---EEEeCCCCCccHHHHHHHHHHH---
Confidence 1235678888899999998888888899999999999999999998764 22 999998 679999999999998
Q ss_pred cCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 399 LGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 399 ~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
+| +.++...+.+. ........+|++|+++ |||+|+++++++++++++|++...+
T Consensus 272 ~g-~~~~~~~~~~~-~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 326 (362)
T 3sxp_A 272 LG-DFKVTYIKNPY-AFFQKHTQAHIEPTILDLDYTPLYDLESGIKDYLPHIHAIFK 326 (362)
T ss_dssp HC-CCEEECCC--------CCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHTCC--
T ss_pred cC-CCceEECCCCC-cCcccceecCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 78 66766665441 2334456799999966 9999999999999999999875433
|
| >1orr_A CDP-tyvelose-2-epimerase; rossmann fold, short-chain dehydrogenase/reductase, isomeras; HET: NAD CDP; 1.50A {Salmonella typhi} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-43 Score=345.32 Aligned_cols=326 Identities=22% Similarity=0.320 Sum_probs=244.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
||+|||||||||||++|+++|+++|++|++++|..+... ......+.. ..++.++.+|++|++
T Consensus 1 M~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~---------------~~~~~~l~~--~~~~~~~~~Dl~d~~ 63 (347)
T 1orr_A 1 MAKLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGA---------------TDNLHWLSS--LGNFEFVHGDIRNKN 63 (347)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTH---------------HHHHHHHHT--TCCCEEEECCTTCHH
T ss_pred CcEEEEeCCCchhHHHHHHHHHhCCCEEEEEeCCCccCc---------------hhhhhhhcc--CCceEEEEcCCCCHH
Confidence 478999999999999999999999999999997532110 011111111 136889999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEG 244 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~ 244 (479)
+++++++..++|+||||||......... ++..++++|+.|+.+++++|++.+++.+|||+||.++||.... +..|+
T Consensus 64 ~~~~~~~~~~~d~vih~A~~~~~~~~~~---~~~~~~~~nv~~~~~l~~a~~~~~~~~~iv~~SS~~v~g~~~~~~~~e~ 140 (347)
T 1orr_A 64 DVTRLITKYMPDSCFHLAGQVAMTTSID---NPCMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNET 140 (347)
T ss_dssp HHHHHHHHHCCSEEEECCCCCCHHHHHH---CHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEEC
T ss_pred HHHHHHhccCCCEEEECCcccChhhhhh---CHHHHHHHHHHHHHHHHHHHHHhCCCceEEEeccHHHhCCCCcCCcccc
Confidence 9999998545999999999754322222 3456789999999999999999886448999999999987543 32222
Q ss_pred --ceeecCC--CCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCc
Q 011707 245 --YITINHN--GRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320 (479)
Q Consensus 245 --~~~~~~~--~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~ 320 (479)
.+..... ..++. .+..+.+.|+.+|+++|.+++.+++++|++++++||++||||+..+..
T Consensus 141 ~~~~~~~~~~~~~~e~--~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~g~~~~~~~-------------- 204 (347)
T 1orr_A 141 ETRYTCVDKPNGYDES--TQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATY-------------- 204 (347)
T ss_dssp SSCEEETTCTTCBCTT--SCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBT--------------
T ss_pred cccccccccccCcccc--CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEccCceeCcCCCCCC--------------
Confidence 1110000 01111 234568899999999999999999889999999999999999764310
Q ss_pred ccchHHHHHHHHhcCC-----CeEEecCCCceeccccHHHHHHHHHHHHhC-CCCCCCceEEEeCCC---CcCHHHHHHH
Q 011707 321 FGTALNRFCVQAAVGH-----PLTVYGKGGQTRGYLDIRDTVQCVELAIAN-PAQPGEFRVFNQFTE---QFSVNQLAAL 391 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~-~~~~g~~~~~ni~~~---~~s~~el~~~ 391 (479)
....+..++..+..+. ++.+++++++.++|+|++|+|++++.++++ ....|+ +||++++ .+|+.|+++.
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~~~~g~--~~~v~~~~~~~~s~~e~~~~ 282 (347)
T 1orr_A 205 DQGWVGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGN--AFNIGGTIVNSLSLLELFKL 282 (347)
T ss_dssp TBCHHHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHHHTTC--EEEESSCGGGEEEHHHHHHH
T ss_pred cCcHHHHHHHHHHhCcccCCCCeEEecCCcceEeeEEHHHHHHHHHHHHhccccCCCC--EEEeCCCCCCCccHHHHHHH
Confidence 0124556666666665 788889999999999999999999999985 223455 9999985 3999999999
Q ss_pred HHHHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 392 VTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 392 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
+.+. +|.+.++...+... .....+.+|++|+++ |||+|+++++++++++++|++....
T Consensus 283 i~~~---~g~~~~~~~~~~~~--~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 341 (347)
T 1orr_A 283 LEDY---CNIDMRFTNLPVRE--SDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSSILE 341 (347)
T ss_dssp HHHH---HTCCCCEEEECCCS--SCCSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHC--
T ss_pred HHHH---hCCCCCceeCCCCC--CCcceeecCHHHHHHHHCCCccCCHHHHHHHHHHHHHHHHH
Confidence 9998 88777776666322 223456789999976 9999999999999999999987554
|
| >1rpn_A GDP-mannose 4,6-dehydratase; short-chain dehydrogenase/reductase, rossmann fold, lyase; HET: NDP GDP; 2.15A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-42 Score=341.08 Aligned_cols=314 Identities=18% Similarity=0.139 Sum_probs=242.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+|+|||||||||||++|+++|+++|++|++++|....... ..+..+. ...++.++.+|++|.
T Consensus 13 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------------~~~~~~~--~~~~~~~~~~Dl~d~ 75 (335)
T 1rpn_A 13 MTRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTR---------------WRLRELG--IEGDIQYEDGDMADA 75 (335)
T ss_dssp --CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC---------------HHHHHTT--CGGGEEEEECCTTCH
T ss_pred cCCeEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCccccc---------------cchhhcc--ccCceEEEECCCCCH
Confidence 57899999999999999999999999999999986432100 0111110 124788999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCC-cceEEEeeccccccCCCC-CCc
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ-ECHLVKLGTMGEYGTPNI-DIE 242 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~-~~~~V~~SS~~v~g~~~~-~~~ 242 (479)
+++.++++..++|+|||+||......... ++...+++|+.|+.+++++|++.++ + +|||+||.++||.... ++.
T Consensus 76 ~~~~~~~~~~~~d~Vih~A~~~~~~~~~~---~~~~~~~~n~~~~~~l~~a~~~~~~~~-~~v~~SS~~v~g~~~~~~~~ 151 (335)
T 1rpn_A 76 CSVQRAVIKAQPQEVYNLAAQSFVGASWN---QPVTTGVVDGLGVTHLLEAIRQFSPET-RFYQASTSEMFGLIQAERQD 151 (335)
T ss_dssp HHHHHHHHHHCCSEEEECCSCCCHHHHTT---SHHHHHHHHTHHHHHHHHHHHHHCTTS-EEEEEEEGGGGCSCSSSSBC
T ss_pred HHHHHHHHHcCCCEEEECccccchhhhhh---ChHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEEeCHHHhCCCCCCCCC
Confidence 99999998667899999999754322222 3456789999999999999999886 5 9999999999997654 555
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|+ .+..|.+.|+.+|+++|.+++.++++++++++++||+++|||+..... ..
T Consensus 152 E~--------------~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~v~Gp~~~~~~--------------~~ 203 (335)
T 1rpn_A 152 EN--------------TPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEF--------------VT 203 (335)
T ss_dssp TT--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTS--------------HH
T ss_pred cc--------------cCCCCCChhHHHHHHHHHHHHHHHHHcCCcEEEEeeCcccCCCCCCCc--------------ch
Confidence 54 345667899999999999999999889999999999999999754211 12
Q ss_pred chHHHHHHHHhcCC-CeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcC
Q 011707 323 TALNRFCVQAAVGH-PLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 323 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g 400 (479)
..+..++..+..++ +...++++++.++|+|++|+|++++.+++++. ++ +||+++ +.+|+.|+++.+.+. +|
T Consensus 204 ~~~~~~~~~~~~g~~~~~~~g~g~~~~~~i~v~Dva~a~~~~~~~~~--~~--~~ni~~~~~~s~~e~~~~i~~~---~g 276 (335)
T 1rpn_A 204 RKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDK--AD--DYVVATGVTTTVRDMCQIAFEH---VG 276 (335)
T ss_dssp HHHHHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSS--CC--CEEECCSCEEEHHHHHHHHHHT---TT
T ss_pred HHHHHHHHHHHcCCCceEEeCCCcceeceEEHHHHHHHHHHHHhcCC--CC--EEEEeCCCCccHHHHHHHHHHH---hC
Confidence 23556677777776 44557888899999999999999999999764 23 899998 579999999999998 77
Q ss_pred Ccce--eeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 401 LDVK--TISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 401 ~~~~--~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
.+.+ +...+..........+.+|++|+++ |||+|+++++++++++++|++....
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 333 (335)
T 1rpn_A 277 LDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVS 333 (335)
T ss_dssp CCGGGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CCccccccccccccCCCcchhhcCCHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhc
Confidence 6532 1111111112223445689999987 9999999999999999999876543
|
| >1udb_A Epimerase, UDP-galactose-4-epimerase; isomerase; HET: NAD UFG; 1.65A {Escherichia coli} SCOP: c.2.1.2 PDB: 1lrj_A* 1nai_A* 1uda_A* 1nah_A* 1xel_A* 1kvq_A* 1kvs_A* 1udc_A* 2udp_A* 1a9z_A* 1kvt_A* 1kvr_A* 1lrk_A* 1lrl_A* 1kvu_A* 1a9y_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-42 Score=339.87 Aligned_cols=323 Identities=23% Similarity=0.267 Sum_probs=239.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+||||||+||||++++++|+++|++|+++++..+... +....+....+.++.++.+|++|+++
T Consensus 1 m~vlVTGatG~iG~~l~~~L~~~G~~V~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~Dl~~~~~ 64 (338)
T 1udb_A 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKR----------------SVLPVIERLGGKHPTFVEGDIRNEAL 64 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCT----------------THHHHHHHHHTSCCEEEECCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEecCCCcch----------------hHHHHHHhhcCCcceEEEccCCCHHH
Confidence 47999999999999999999999999999987433110 01111111113467889999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGY 245 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~ 245 (479)
+.++++..++|+||||||.........+ ....+++|+.|+.++++++++.+++ +|||+||.++||.... ++.|+
T Consensus 65 ~~~~~~~~~~D~vih~A~~~~~~~~~~~---~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~~~g~~~~~~~~e~- 139 (338)
T 1udb_A 65 MTEILHDHAIDTVIHFAGLKAVGESVQK---PLEYYDNNVNGTLRLISAMRAANVK-NFIFSSSATVYGDNPKIPYVES- 139 (338)
T ss_dssp HHHHHHHTTCSEEEECCSCCCHHHHHHC---HHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCCSSSBCTT-
T ss_pred HHHHhhccCCCEEEECCccCccccchhc---HHHHHHHHHHHHHHHHHHHHhcCCC-eEEEEccHHHhCCCCCCCcCcc-
Confidence 9999986579999999997543322222 3457899999999999999998887 9999999999986543 44443
Q ss_pred eeecCCCCCCCCCCCCC-CCchhhhhhHHHHHHHHHHHHHh-CCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 246 ITINHNGRTDTLPYPKQ-ASSFYHLSKVHDSHNIAFTCKAW-GIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~-~~~~Y~~sK~~~E~~~~~~~~~~-gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
.+.. +.+.|+.||+++|.+++.++.++ +++++++||+++|||..... -...+.+....
T Consensus 140 -------------~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~-------~g~~~~~~~~~ 199 (338)
T 1udb_A 140 -------------FPTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGD-------MGEDPQGIPNN 199 (338)
T ss_dssp -------------SCCCCCSSHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSS-------SCCCCCSSCCS
T ss_pred -------------cCCCCCCChHHHHHHHHHHHHHHHHHhcCCCceEEEeeceecCCCcccc-------cccccccchhh
Confidence 1222 37899999999999999998887 89999999999999953110 00011111233
Q ss_pred hHHHHHHHHh-cCCCeEEec------CCCceeccccHHHHHHHHHHHHhCCC-CCCCceEEEeCC-CCcCHHHHHHHHHH
Q 011707 324 ALNRFCVQAA-VGHPLTVYG------KGGQTRGYLDIRDTVQCVELAIANPA-QPGEFRVFNQFT-EQFSVNQLAALVTK 394 (479)
Q Consensus 324 ~~~~~~~~~~-~~~~~~~~~------~~~~~~~~v~v~Dva~a~~~~~~~~~-~~g~~~~~ni~~-~~~s~~el~~~i~~ 394 (479)
++..++.... .+.++.+++ ++.+.++|+|++|+|++++.+++++. ..+ ..+||+++ +++|+.|+++.+.+
T Consensus 200 ~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~-~~~yni~~~~~~s~~e~~~~i~~ 278 (338)
T 1udb_A 200 LMPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPG-VHIYNLGAGVGNSVLDVVNAFSK 278 (338)
T ss_dssp HHHHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTCCE-EEEEEESCSCCEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEecCcccCCCCceeeeeEEHHHHHHHHHHHHhhhhccCC-CcEEEecCCCceeHHHHHHHHHH
Confidence 4444444444 345666665 46788999999999999999997632 222 14999998 67999999999999
Q ss_pred HhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcccC
Q 011707 395 AGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDRV 456 (479)
Q Consensus 395 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~~ 456 (479)
. +|.++++...+.... ....+.+|++|+++ |||+|+++++++++++++|++...+.+
T Consensus 279 ~---~g~~~~~~~~~~~~~--~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~w~~~~~~~~ 336 (338)
T 1udb_A 279 A---CGKPVNYHFAPRREG--DLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGY 336 (338)
T ss_dssp H---HTSCCCEEEECCCTT--CCSBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCTTCS
T ss_pred H---hCCCCcceeCCCCCC--chhhhhcCHHHHHHHcCCCcCCCHHHHHHHHHHHHHhccccc
Confidence 8 777766665554322 22345689999976 999999999999999999998765443
|
| >1r6d_A TDP-glucose-4,6-dehydratase; rossmann fold, short-chain dehydrogenase/reductase, lyase; HET: NAD DAU; 1.35A {Streptomyces venezuelae} SCOP: c.2.1.2 PDB: 1r66_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-42 Score=338.03 Aligned_cols=306 Identities=21% Similarity=0.298 Sum_probs=243.0
Q ss_pred cEEEEEcCCchhhHHHHHHHHhC---C---CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNK---G---YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~---G---~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
|+|||||||||||++|+++|+++ | ++|++++|....... +.+..+. ...++.++.+|
T Consensus 1 M~vlVTGatG~iG~~l~~~L~~~~~~g~~~~~V~~~~r~~~~~~~---------------~~~~~~~--~~~~~~~~~~D 63 (337)
T 1r6d_A 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR---------------ANLAPVD--ADPRLRFVHGD 63 (337)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG---------------GGGGGGT--TCTTEEEEECC
T ss_pred CeEEEECCccHHHHHHHHHHHhhhcCCCCceEEEEEECCCccCch---------------hhhhhcc--cCCCeEEEEcC
Confidence 57999999999999999999997 8 999999985421100 0111110 12578999999
Q ss_pred cCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI- 239 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~- 239 (479)
++|++++.+++. ++|+||||||......... ++..++++|+.|+.+++++|++.+++ +|||+||.++||....
T Consensus 64 l~d~~~~~~~~~--~~d~Vih~A~~~~~~~~~~---~~~~~~~~Nv~~~~~l~~a~~~~~~~-~~v~~SS~~vyg~~~~~ 137 (337)
T 1r6d_A 64 IRDAGLLARELR--GVDAIVHFAAESHVDRSIA---GASVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSG 137 (337)
T ss_dssp TTCHHHHHHHTT--TCCEEEECCSCCCHHHHHH---CCHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSS
T ss_pred CCCHHHHHHHhc--CCCEEEECCCccCchhhhh---CHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEecchHHhCCCCCC
Confidence 999999999997 8999999999754322222 34567899999999999999999887 9999999999987532
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCC
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDG 319 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g 319 (479)
++.|+ .+..+.+.|+.+|+++|.+++.+++++|++++++||++||||+..+
T Consensus 138 ~~~E~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~g~~~~ilrp~~v~G~~~~~--------------- 188 (337)
T 1r6d_A 138 SWTES--------------SPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP--------------- 188 (337)
T ss_dssp CBCTT--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT---------------
T ss_pred CCCCC--------------CCCCCCCchHHHHHHHHHHHHHHHHHHCCCEEEEEeeeeECCCCCC---------------
Confidence 44444 2445688999999999999999998899999999999999998643
Q ss_pred cccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhh
Q 011707 320 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEK 398 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~ 398 (479)
..++..++..+..++++.+++++.+.++|+|++|+|++++.+++++. .|+ +||+++ ..+|+.|+++.+.+.
T Consensus 189 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~g~--~~~v~~~~~~s~~e~~~~i~~~--- 260 (337)
T 1r6d_A 189 --EKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGR-AGE--IYHIGGGLELTNRELTGILLDS--- 260 (337)
T ss_dssp --TSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-TTC--EEEECCCCEEEHHHHHHHHHHH---
T ss_pred --CChHHHHHHHHhcCCCcEEeCCCCeeEeeEeHHHHHHHHHHHHhCCC-CCC--EEEeCCCCCccHHHHHHHHHHH---
Confidence 23456777888888888888988899999999999999999998653 355 999998 569999999999998
Q ss_pred cCCcce-eeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 399 LGLDVK-TISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 399 ~g~~~~-~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
+|.+.+ +...+.... ....+.+|++|+++ |||+|+++++++++++++|++...+
T Consensus 261 ~g~~~~~~~~~~~~~~--~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 316 (337)
T 1r6d_A 261 LGADWSSVRKVADRKG--HDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENRG 316 (337)
T ss_dssp HTCCGGGEEEECCCTT--CCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHCHH
T ss_pred hCCCcccceecCCCCC--CcceeecCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhchh
Confidence 777643 333332211 22345689999987 9999999999999999999976543
|
| >1rkx_A CDP-glucose-4,6-dehydratase; SDR, lyase; HET: NAD; 1.80A {Yersinia pseudotuberculosis} SCOP: c.2.1.2 PDB: 1wvg_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-42 Score=341.63 Aligned_cols=313 Identities=19% Similarity=0.210 Sum_probs=242.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+||||++|+++|+++|++|++++|....... +.. .+. ...++.++.+|++|
T Consensus 7 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------------~~~---~~~--~~~~~~~~~~Dl~d 68 (357)
T 1rkx_A 7 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPS-------------LFE---TAR--VADGMQSEIGDIRD 68 (357)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSC-------------HHH---HTT--TTTTSEEEECCTTC
T ss_pred hCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEeCCCcccch-------------hhH---hhc--cCCceEEEEccccC
Confidence 357899999999999999999999999999999986432100 000 010 13578999999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccCCCC--C
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGTPNI--D 240 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~~~~--~ 240 (479)
++++.++++..++|+||||||........ .++...+++|+.|+.+++++|++.+ ++ +|||+||.++||.... +
T Consensus 69 ~~~~~~~~~~~~~d~vih~A~~~~~~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~~~~-~~v~~SS~~vyg~~~~~~~ 144 (357)
T 1rkx_A 69 QNKLLESIREFQPEIVFHMAAQPLVRLSY---SEPVETYSTNVMGTVYLLEAIRHVGGVK-AVVNITSDKCYDNKEWIWG 144 (357)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHH---HCHHHHHHHHTHHHHHHHHHHHHHCCCC-EEEEECCGGGBCCCCSSSC
T ss_pred HHHHHHHHHhcCCCEEEECCCCcccccch---hCHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEecCHHHhCCCCcCCC
Confidence 99999999865699999999963322222 2345678999999999999999887 56 9999999999997653 3
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---------CCceEEeecCeeecCCCCchhhhHhh
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---------GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---------gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
..|+ .+..+.+.|+.+|+++|.+++.++.++ |++++++||++||||++.+.
T Consensus 145 ~~E~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~gi~~~~lrp~~v~G~~~~~~------ 204 (357)
T 1rkx_A 145 YREN--------------EAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWAL------ 204 (357)
T ss_dssp BCTT--------------SCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCS------
T ss_pred CCCC--------------CCCCCCCccHHHHHHHHHHHHHHHHHHhhhhccccCCceEEEEeeceeeCCCCCcc------
Confidence 4443 244567899999999999999998765 99999999999999975321
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhC----CCCCCCceEEEeCC---CCcC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN----PAQPGEFRVFNQFT---EQFS 384 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~----~~~~g~~~~~ni~~---~~~s 384 (479)
..++..++..+..+.++.+. ++.+.++|+|++|+|++++.++++ +...++ +||+++ +.+|
T Consensus 205 ----------~~~~~~~~~~~~~g~~~~~~-~~~~~~~~v~v~Dva~a~~~~~~~~~~~~~~~~~--~~ni~~~~~~~~s 271 (357)
T 1rkx_A 205 ----------DRIVPDILRAFEQSQPVIIR-NPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAE--GWNFGPNDADATP 271 (357)
T ss_dssp ----------SCHHHHHHHHHHTTCCEECS-CTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCS--EEECCCCGGGCEE
T ss_pred ----------ccHHHHHHHHHhcCCCEEEC-CCCCeeccEeHHHHHHHHHHHHHhhhhcCCCCCc--eEEECCCCCCccc
Confidence 23567788888888887664 567889999999999999999874 223344 999996 3699
Q ss_pred HHHHHHHHHHHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhccc
Q 011707 385 VNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDR 455 (479)
Q Consensus 385 ~~el~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~ 455 (479)
+.|+++.+.+. +|.+.++...+... ......+.+|++|+++ |||+|+++++++++++++|++.+...
T Consensus 272 ~~e~~~~i~~~---~g~~~~~~~~~~~~-~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 339 (357)
T 1rkx_A 272 VKNIVEQMVKY---WGEGASWQLDGNAH-PHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSG 339 (357)
T ss_dssp HHHHHHHHHHH---HCTTCCEEC--------CCCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH---hCCCCccccCCCCC-CcCcccccCCHHHHHHHhCCCcCCcHHHHHHHHHHHHHHHhcC
Confidence 99999999998 77766654433211 2223456799999987 99999999999999999999875543
|
| >2c5a_A GDP-mannose-3', 5'-epimerase; short chain dehydratase/reductase, GDP-gulose, GDP-galactose, keto intermediate, vitamin C, SDR; HET: GDC NAD BTB; 1.4A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2c59_A* 2c54_A* 2c5e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-42 Score=342.58 Aligned_cols=308 Identities=18% Similarity=0.146 Sum_probs=246.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++|+|||||||||||++|+++|+++|++|++++|....... ....++.++.+|++|
T Consensus 27 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----------------------~~~~~v~~~~~Dl~d 83 (379)
T 2c5a_A 27 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMT-----------------------EDMFCDEFHLVDLRV 83 (379)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSC-----------------------GGGTCSEEEECCTTS
T ss_pred ccCCeEEEECCccHHHHHHHHHHHHCCCeEEEEECCCccchh-----------------------hccCCceEEECCCCC
Confidence 357899999999999999999999999999999986432100 011468899999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC----
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI---- 239 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~---- 239 (479)
.+++.++++ ++|+|||+||....... ...++..++++|+.|+.+++++|++.+++ +|||+||.++|+....
T Consensus 84 ~~~~~~~~~--~~d~Vih~A~~~~~~~~--~~~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~~V~~SS~~v~~~~~~~~~~ 158 (379)
T 2c5a_A 84 MENCLKVTE--GVDHVFNLAADMGGMGF--IQSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETT 158 (379)
T ss_dssp HHHHHHHHT--TCSEEEECCCCCCCHHH--HTTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSS
T ss_pred HHHHHHHhC--CCCEEEECceecCcccc--cccCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEeehheeCCCCCCCcc
Confidence 999999998 89999999997542211 12234667899999999999999999887 9999999999986432
Q ss_pred --CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCC
Q 011707 240 --DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDY 317 (479)
Q Consensus 240 --~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~ 317 (479)
++.|+. +.+..+.+.|+.+|+++|.+++.+++++|++++++||++||||+.....
T Consensus 159 ~~~~~E~~------------~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilrp~~v~G~~~~~~~----------- 215 (379)
T 2c5a_A 159 NVSLKESD------------AWPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKG----------- 215 (379)
T ss_dssp SCEECGGG------------GSSBCCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSS-----------
T ss_pred CCCcCccc------------CCCCCCCChhHHHHHHHHHHHHHHHHHHCCCEEEEEeCceeCcCCCccc-----------
Confidence 223321 1134567899999999999999999888999999999999999764310
Q ss_pred CCcccchHHHHHHHHhcCCC-eEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHH
Q 011707 318 DGVFGTALNRFCVQAAVGHP-LTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKA 395 (479)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~ 395 (479)
-...++..++..+..+.+ +.+++++.+.++|+|++|+|++++.+++++ .++ +||+++ +.+|+.|+++.+.+.
T Consensus 216 --~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~--~~~--~~ni~~~~~~s~~e~~~~i~~~ 289 (379)
T 2c5a_A 216 --GREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSD--FRE--PVNIGSDEMVSMNEMAEMVLSF 289 (379)
T ss_dssp --SCCCHHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSS--CCS--CEEECCCCCEEHHHHHHHHHHT
T ss_pred --ccccHHHHHHHHHHhCCCceEEeCCCCeeEEEEEHHHHHHHHHHHhhcc--CCC--eEEeCCCCccCHHHHHHHHHHH
Confidence 001256677888877876 888898889999999999999999999876 344 899998 679999999999998
Q ss_pred hhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 396 GEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 396 ~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
+|.+.++...+.+.. .....+|++|+++ |||+|+++++++++++++|++....
T Consensus 290 ---~g~~~~~~~~p~~~~---~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~ 343 (379)
T 2c5a_A 290 ---EEKKLPIHHIPGPEG---VRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIE 343 (379)
T ss_dssp ---TTCCCCEEEECCCCC---CSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred ---hCCCCceeeCCCCCC---cccccCCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhHh
Confidence 888777766665321 2334689999987 9999999999999999999876443
|
| >1oc2_A DTDP-glucose 4,6-dehydratase; lyase, NADH, rhamnose; HET: TDX NAD; 1.5A {Streptococcus suis} SCOP: c.2.1.2 PDB: 1ker_A* 1ket_A* 1kep_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-42 Score=338.25 Aligned_cols=305 Identities=21% Similarity=0.288 Sum_probs=241.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhC--CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNK--GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+|+||||||+||||++|+++|+++ |++|++++|....... + .+..+...++.++.+|++|
T Consensus 4 m~~vlVTGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~---------------~---~~~~~~~~~~~~~~~Dl~d 65 (348)
T 1oc2_A 4 FKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGNK---------------A---NLEAILGDRVELVVGDIAD 65 (348)
T ss_dssp CSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCCG---------------G---GTGGGCSSSEEEEECCTTC
T ss_pred CcEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEeCCCCCCCh---------------h---HHhhhccCCeEEEECCCCC
Confidence 579999999999999999999999 8999999985421100 0 1111123578999999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCC-----
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN----- 238 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~----- 238 (479)
++++.++++ ++|+||||||......... ++...+++|+.|+.+++++|.+.++ +|||+||.++||...
T Consensus 66 ~~~~~~~~~--~~d~vih~A~~~~~~~~~~---~~~~~~~~Nv~g~~~l~~a~~~~~~--~~v~~SS~~vyg~~~~~~~~ 138 (348)
T 1oc2_A 66 AELVDKLAA--KADAIVHYAAESHNDNSLN---DPSPFIHTNFIGTYTLLEAARKYDI--RFHHVSTDEVYGDLPLREDL 138 (348)
T ss_dssp HHHHHHHHT--TCSEEEECCSCCCHHHHHH---CCHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGGCCBCCGGGS
T ss_pred HHHHHHHhh--cCCEEEECCcccCccchhh---CHHHHHHHHHHHHHHHHHHHHHhCC--eEEEecccceeCCCcccccc
Confidence 999999998 7899999999754322222 3456789999999999999999873 999999999998642
Q ss_pred --------CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHh
Q 011707 239 --------IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 239 --------~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
.++.|+ .+..+.+.|+.+|+++|.+++.++.++|++++++||++||||+..+
T Consensus 139 ~~~~~~~~~~~~E~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilrp~~v~G~~~~~------ 198 (348)
T 1oc2_A 139 PGHGEGPGEKFTAE--------------TNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHI------ 198 (348)
T ss_dssp TTTTCSTTSSBCTT--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCT------
T ss_pred cccccccCCCcCCC--------------CCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEeeceeeCCCCCc------
Confidence 223332 2445678999999999999999998899999999999999998643
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHH
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLA 389 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~ 389 (479)
..++..++..+..+.++.+++++.+.++|+|++|+|++++.+++++. .|+ +||+++ ..+|+.|++
T Consensus 199 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~~~~~~-~g~--~~~i~~~~~~s~~e~~ 264 (348)
T 1oc2_A 199 -----------EKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGR-MGE--TYLIGADGEKNNKEVL 264 (348)
T ss_dssp -----------TSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCC-TTC--EEEECCSCEEEHHHHH
T ss_pred -----------cchHHHHHHHHHcCCCceEecCCCceEeeEEHHHHHHHHHHHhhCCC-CCC--eEEeCCCCCCCHHHHH
Confidence 13456777788888888888888899999999999999999998653 455 999998 579999999
Q ss_pred HHHHHHhhhcCCcce-eeecCCCCcccccccccCCchHHHH-cCCccccc-HHHHHHHHHHHHHHhcc
Q 011707 390 ALVTKAGEKLGLDVK-TISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHIL-SDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 390 ~~i~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~-~~~~~~~~~~~~~~~~~ 454 (479)
+.+.+. +|.+.+ +...+... .....+.+|++|+++ |||+|+++ ++++++++++|++....
T Consensus 265 ~~i~~~---~g~~~~~~~~~~~~~--~~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~~~ 327 (348)
T 1oc2_A 265 ELILEK---MGQPKDAYDHVTDRA--GHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQD 327 (348)
T ss_dssp HHHHHH---TTCCTTCSEEECCCT--TCCCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHH---hCCCccccccCCCCC--CcccccccCHHHHHHHcCCCCCCCcHHHHHHHHHHHHHHhhh
Confidence 999998 776543 33322221 122345689999987 99999997 99999999999986543
|
| >1gy8_A UDP-galactose 4-epimerase; oxidoreductase; HET: NAD UDP; 2.0A {Trypanosoma brucei} SCOP: c.2.1.2 PDB: 2cnb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-42 Score=345.42 Aligned_cols=335 Identities=23% Similarity=0.290 Sum_probs=243.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHH-hCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCc---eeEEEcc
Q 011707 86 AKRVMIIGGDGYCGWATALHLS-NKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKN---IELYIGD 160 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll-~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---v~~v~~D 160 (479)
+|+||||||+||||++|+++|+ ++|++|++++|........ ........+.+.++.+... ...+ +.++.+|
T Consensus 2 ~m~vlVTGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 77 (397)
T 1gy8_A 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKS----DHVETRENVARKLQQSDGPKPPWADRYAALEVGD 77 (397)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCC----TTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHhCCCEEEEEecCCcccccc----cccchHHHHHHHHHHhhccccccCCceEEEEECC
Confidence 4699999999999999999999 9999999999864321000 0000000111111111100 0124 8899999
Q ss_pred cCChHHHHHHhhhcC-CCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCC-
Q 011707 161 ICDFEFLSESFKSFE-PDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN- 238 (479)
Q Consensus 161 l~d~~~~~~~~~~~~-~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~- 238 (479)
++|++++.++++..+ +|+||||||........ .++..++++|+.|+.+++++|++.+++ +|||+||.++||...
T Consensus 78 l~d~~~~~~~~~~~~~~d~vih~A~~~~~~~~~---~~~~~~~~~Nv~g~~~ll~a~~~~~~~-~iv~~SS~~v~g~~~~ 153 (397)
T 1gy8_A 78 VRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESV---RDPLKYYDNNVVGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTM 153 (397)
T ss_dssp TTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHH---HCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGTBSCCC
T ss_pred CCCHHHHHHHHHhcCCCCEEEECCCccCcCcch---hhHHHHHHHHhHHHHHHHHHHHHhCCC-EEEEECCHHHhCCCCc
Confidence 999999999998666 99999999975433222 234567899999999999999998887 999999999998754
Q ss_pred -------CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhh
Q 011707 239 -------IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 239 -------~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
.++.|+ .+..|.+.|+.+|+++|.+++.++.++|++++++||++||||+.....
T Consensus 154 ~~~~~~~~~~~E~--------------~~~~p~~~Y~~sK~~~e~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~----- 214 (397)
T 1gy8_A 154 GSVSTNAEPIDIN--------------AKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDI----- 214 (397)
T ss_dssp -----CCCCBCTT--------------SCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSC-----
T ss_pred ccccccccCcCcc--------------CCCCCCCchHHHHHHHHHHHHHHHHHHCCcEEEEeccceeCCCccccc-----
Confidence 234443 244567899999999999999999989999999999999999742100
Q ss_pred hcccCCCCcccchHHHHH----HHHhcCC------------CeEEec------CCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 312 CNRLDYDGVFGTALNRFC----VQAAVGH------------PLTVYG------KGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~----~~~~~~~------------~~~~~~------~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
. .... ....++..++ .++..+. ++.+++ ++++.++|+||+|+|++++.+++++..
T Consensus 215 g--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~v~v~Dva~a~~~~l~~~~~ 291 (397)
T 1gy8_A 215 G--EHYQ-GSTHLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEK 291 (397)
T ss_dssp S--CCST-TCCSHHHHHHHHHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHT
T ss_pred c--cccc-chhHHHHHHHHHHHHHHHhcCccccccccccCCCceeecCcccCCCCCeeEeeEeHHHHHHHHHHHHhcccc
Confidence 0 0000 0022344333 2555553 577776 678899999999999999999976432
Q ss_pred CC---Cc---eEEEeCC-CCcCHHHHHHHHHHHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccc-cHHH
Q 011707 370 PG---EF---RVFNQFT-EQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHI-LSDS 440 (479)
Q Consensus 370 ~g---~~---~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~-~~~~ 440 (479)
.+ .. .+||+++ +.+|+.|+++.+.+. +|.++++...+.... ....+.+|++|+++ |||+|++ ++++
T Consensus 292 ~~~~~~~~~~~~~ni~~~~~~s~~e~~~~i~~~---~g~~~~~~~~~~~~~--~~~~~~~d~~k~~~~lG~~p~~~~l~e 366 (397)
T 1gy8_A 292 LGPNDKSKYFSVFNLGTSRGYSVREVIEVARKT---TGHPIPVRECGRREG--DPAYLVAASDKAREVLGWKPKYDTLEA 366 (397)
T ss_dssp CCTTTGGGSEEEEEESCSCCEEHHHHHHHHHHH---HCCCCCEEEECCCTT--CCSEECBCCHHHHHHTCCCCSCCSHHH
T ss_pred cccccccCCCcEEEeCCCCcccHHHHHHHHHHH---hCCCCCeeeCCCCCC--cccccccCHHHHHHHhCCCCCcCCHHH
Confidence 22 12 4999998 679999999999998 787777666554322 23356789999976 9999999 9999
Q ss_pred HHHHHHHHHHHhccc
Q 011707 441 LLDSLLNFAIQFKDR 455 (479)
Q Consensus 441 ~~~~~~~~~~~~~~~ 455 (479)
+++++++|++..++.
T Consensus 367 ~l~~~~~~~~~~~~~ 381 (397)
T 1gy8_A 367 IMETSWKFQRTHPNG 381 (397)
T ss_dssp HHHHHHHHHHTCTTT
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999875543
|
| >2q1s_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NADH complex, sugar binding protein; HET: NAI; 1.50A {Bordetella bronchiseptica} PDB: 2pzj_A* 2q1t_A* 2q1u_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=345.20 Aligned_cols=309 Identities=20% Similarity=0.232 Sum_probs=239.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+++|+|||||||||||++|+++|+++| ++|++++|....... .+. ...+++++.+|++
T Consensus 30 ~~~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~~-------------------~l~--~~~~v~~~~~Dl~ 88 (377)
T 2q1s_A 30 LANTNVMVVGGAGFVGSNLVKRLLELGVNQVHVVDNLLSAEKI-------------------NVP--DHPAVRFSETSIT 88 (377)
T ss_dssp GTTCEEEEETTTSHHHHHHHHHHHHTTCSEEEEECCCTTCCGG-------------------GSC--CCTTEEEECSCTT
T ss_pred hCCCEEEEECCccHHHHHHHHHHHHcCCceEEEEECCCCCchh-------------------hcc--CCCceEEEECCCC
Confidence 467899999999999999999999999 999999886432100 000 1357899999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccccCCCC-C
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEYGTPNI-D 240 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~g~~~~-~ 240 (479)
|++++.++++ ++|+|||+||......... ++...+++|+.|+.+++++|++. +++ +|||+||.++||.... +
T Consensus 89 d~~~l~~~~~--~~d~Vih~A~~~~~~~~~~---~~~~~~~~nv~~~~~ll~a~~~~~~~~-~~V~~SS~~vyg~~~~~~ 162 (377)
T 2q1s_A 89 DDALLASLQD--EYDYVFHLATYHGNQSSIH---DPLADHENNTLTTLKLYERLKHFKRLK-KVVYSAAGCSIAEKTFDD 162 (377)
T ss_dssp CHHHHHHCCS--CCSEEEECCCCSCHHHHHH---CHHHHHHHHTHHHHHHHHHHTTCSSCC-EEEEEEEC----------
T ss_pred CHHHHHHHhh--CCCEEEECCCccCchhhhh---CHHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEeCCHHHcCCCCCCC
Confidence 9999999998 8999999999754332222 23567899999999999999998 777 9999999999987543 4
Q ss_pred Cc--CCceeecCCCCCCCCCCCC-CCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCC---------Cchhhh
Q 011707 241 IE--EGYITINHNGRTDTLPYPK-QASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT---------DETAMH 308 (479)
Q Consensus 241 ~~--e~~~~~~~~~~~~~~~~~~-~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~---------~~~~~~ 308 (479)
+. |+.+. .+. .+.+.|+.+|+++|.+++.+++++|++++++||++||||+. .+.
T Consensus 163 ~~~~E~~~~-----------~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRp~~v~G~~~~~~~g~~~~~~~--- 228 (377)
T 2q1s_A 163 AKATEETDI-----------VSLHNNDSPYSMSKIFGEFYSVYYHKQHQLPTVRARFQNVYGPGEILGAGRWRGTPA--- 228 (377)
T ss_dssp ----CCCCC-----------CCSSCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTCSSCCSSGG---
T ss_pred cCccccccc-----------ccccCCCCchHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCcccccccccCcc---
Confidence 44 44110 133 56789999999999999999988899999999999999976 210
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHH-HHHHHhCCCCCCCceEEEeCC-CCcCHH
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQC-VELAIANPAQPGEFRVFNQFT-EQFSVN 386 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a-~~~~~~~~~~~g~~~~~ni~~-~~~s~~ 386 (479)
+.+..++..++..+..+.++.+++++++.++|+|++|+|++ ++.+++++. . + +||+++ +.+|+.
T Consensus 229 ----------~~~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~a~i~~~~~~~~-~--g-~~~i~~~~~~s~~ 294 (377)
T 2q1s_A 229 ----------TVWRNVTPTFIYKALKGMPLPLENGGVATRDFIFVEDVANGLIACAADGTP-G--G-VYNIASGKETSIA 294 (377)
T ss_dssp ----------GTSCSHHHHHHHHHHTTCCCCCSGGGCCEECCEEHHHHHHHHHHHHHHCCT-T--E-EEECCCCCCEEHH
T ss_pred ----------cccccHHHHHHHHHHcCCCeEEeCCCCeEEeeEEHHHHHHHHHHHHHhcCC-C--C-eEEecCCCceeHH
Confidence 00123567788888889888888888899999999999999 999998754 2 2 999998 689999
Q ss_pred HHHHHHHHHhhhcCCcceeeecCCCCcccccc-cccCCchHHHH-cCCcccccHHHHHHHHHHHHHHh
Q 011707 387 QLAALVTKAGEKLGLDVKTISVPNPRVEAEEH-YYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 387 el~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~ 452 (479)
|+++.+.+. +|.+.++...|... .... .+.+|++|+++ |||+|+++++++++++++|++..
T Consensus 295 e~~~~i~~~---~g~~~~~~~~p~~~--~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~ 357 (377)
T 2q1s_A 295 DLATKINEI---TGNNTELDRLPKRP--WDNSGKRFGSPEKARRELGFSADVSIDDGLRKTIEWTKAN 357 (377)
T ss_dssp HHHHHHHHH---HTCCSCCCCCCCCG--GGCC-CCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH---hCCCCCceeCCCCc--cccccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHh
Confidence 999999998 78776665555322 2233 56799999976 99999999999999999998764
|
| >2bll_A Protein YFBG; decarboxylase, short chain dehydrogenase, L-ARA4N biosynthes methyltransferase, transferase; 2.3A {Escherichia coli} SCOP: c.2.1.2 PDB: 1u9j_A 1z73_A 1z75_A 1z7b_A 1z74_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-41 Score=336.55 Aligned_cols=319 Identities=18% Similarity=0.181 Sum_probs=239.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh-
Q 011707 87 KRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF- 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~- 164 (479)
|+|||||||||||++|+++|+++ |++|++++|...... .+ ....+++++.+|++|.
T Consensus 1 m~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~--------------------~~--~~~~~~~~~~~D~~~~~ 58 (345)
T 2bll_A 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS--------------------RF--LNHPHFHFVEGDISIHS 58 (345)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGG--------------------GG--TTCTTEEEEECCTTTCS
T ss_pred CeEEEECCCcHHHHHHHHHHHHhCCCEEEEEeCCcchHH--------------------Hh--hcCCCeEEEeccccCcH
Confidence 58999999999999999999998 899999998643210 00 0124789999999984
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcC
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEE 243 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e 243 (479)
+.++++++ ++|+|||+||.........+ +..++++|+.|+.+++++|++.+ + +|||+||.++||.... ++.|
T Consensus 59 ~~~~~~~~--~~d~vih~A~~~~~~~~~~~---~~~~~~~n~~~~~~l~~~~~~~~-~-~~v~~SS~~v~g~~~~~~~~e 131 (345)
T 2bll_A 59 EWIEYHVK--KCDVVLPLVAIATPIEYTRN---PLRVFELDFEENLRIIRYCVKYR-K-RIIFPSTSEVYGMCSDKYFDE 131 (345)
T ss_dssp HHHHHHHH--HCSEEEECBCCCCHHHHHHS---HHHHHHHHTHHHHHHHHHHHHTT-C-EEEEECCGGGGBTCCCSSBCT
T ss_pred HHHHhhcc--CCCEEEEcccccCccchhcC---HHHHHHHHHHHHHHHHHHHHHhC-C-eEEEEecHHHcCCCCCCCcCC
Confidence 67888888 79999999997543222222 35578999999999999999988 5 9999999999987653 4555
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
+..+... .....+.+.|+.+|+++|.+++.+++++|++++++||++||||+.+.... +......
T Consensus 132 ~~~~~~~-------~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~~---------~~~~~~~ 195 (345)
T 2bll_A 132 DHSNLIV-------GPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNA---------ARIGSSR 195 (345)
T ss_dssp TTCCCBC-------CCTTCGGGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCTTC---------SBSCBCH
T ss_pred ccccccc-------CcccCcccccHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccCCCcccccc---------ccccccc
Confidence 4211000 00113567999999999999999998889999999999999998642100 0000023
Q ss_pred hHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC--CCCCceEEEeCC-C-CcCHHHHHHHHHHHhhhc
Q 011707 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA--QPGEFRVFNQFT-E-QFSVNQLAALVTKAGEKL 399 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~g~~~~~ni~~-~-~~s~~el~~~i~~~~~~~ 399 (479)
++..++..+..++++.+++++.+.++|+|++|+|++++.+++++. ..+ ++||+++ + .+|+.|+++.+.+. +
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~~~~~~~~~~g--~~~~i~~~~~~~s~~e~~~~i~~~---~ 270 (345)
T 2bll_A 196 AITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDG--EIINIGNPENEASIEELGEMLLAS---F 270 (345)
T ss_dssp HHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGGTTTT--EEEEECCTTSEEEHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHcCCCcEEECCCCEEEEEEEHHHHHHHHHHHHhhccccCCC--ceEEeCCCCCCCCHHHHHHHHHHH---h
Confidence 467788888899998888888899999999999999999998764 234 4999998 4 69999999999998 5
Q ss_pred CCcceeeecCCCCc-------------ccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhccc
Q 011707 400 GLDVKTISVPNPRV-------------EAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDR 455 (479)
Q Consensus 400 g~~~~~~~~~~~~~-------------~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~ 455 (479)
|.+......+.... ........+|++|+++ |||+|+++++++++++++|++...+.
T Consensus 271 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~~~~~~~ 340 (345)
T 2bll_A 271 EKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340 (345)
T ss_dssp HTCTTGGGSCCCCCEEEC------------CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred CCCcccccCccccccccccchhhccccccchhhhcccHHHHHHhcCCCccccHHHHHHHHHHHHHHcCCC
Confidence 54432222221110 0112345689999987 99999999999999999999875543
|
| >1e6u_A GDP-fucose synthetase; epimerase/reductase, SDR, RED; HET: NAP; 1.45A {Escherichia coli} SCOP: c.2.1.2 PDB: 1e7q_A* 1bsv_A* 1fxs_A* 1gfs_A 1e7s_A* 1bws_A* 1e7r_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-42 Score=335.14 Aligned_cols=299 Identities=16% Similarity=0.135 Sum_probs=236.1
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|+|||||||||||++|+++|+++|++|+++++.. .+|++|.
T Consensus 2 ~~~~ilVtGatG~iG~~l~~~L~~~g~~v~~~~r~~-------------------------------------~~D~~d~ 44 (321)
T 1e6u_A 2 AKQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-------------------------------------ELNLLDS 44 (321)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-------------------------------------TCCTTCH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHhCCCeEEEEecCc-------------------------------------cCCccCH
Confidence 367999999999999999999999999999876420 3799999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCc
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIE 242 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~ 242 (479)
+++.++++..++|+|||+||..... ....+ +...+++|+.++.+++++|++.+++ +|||+||.++||.... ++.
T Consensus 45 ~~~~~~~~~~~~d~vih~a~~~~~~~~~~~~---~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~vyg~~~~~~~~ 120 (321)
T 1e6u_A 45 RAVHDFFASERIDQVYLAAAKVGGIVANNTY---PADFIYQNMMIESNIIHAAHQNDVN-KLLFLGSSCIYPKLAKQPMA 120 (321)
T ss_dssp HHHHHHHHHHCCSEEEECCCCCCCHHHHHHC---HHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGSCTTCCSSBC
T ss_pred HHHHHHHHhcCCCEEEEcCeecCCcchhhhC---HHHHHHHHHHHHHHHHHHHHHhCCC-eEEEEccHHHcCCCCCCCcC
Confidence 9999999866899999999975421 11222 3557899999999999999999887 9999999999987543 555
Q ss_pred CCceeecCCCCCCCCCCCCCCC-chhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 243 EGYITINHNGRTDTLPYPKQAS-SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
|+.... .+..|. +.|+.+|+++|.+++.+++++|++++++||++||||+..+.. ..
T Consensus 121 E~~~~~----------~~~~p~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~-------------~~ 177 (321)
T 1e6u_A 121 ESELLQ----------GTLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHP-------------SN 177 (321)
T ss_dssp GGGTTS----------SCCCGGGHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCT-------------TC
T ss_pred cccccc----------CCCCCCCCccHHHHHHHHHHHHHHHHHhCCCEEEEEeCCcCCcCCCCCC-------------CC
Confidence 542100 022333 699999999999999999888999999999999999864310 01
Q ss_pred cchHHHHHHHHhc----C-CCeEEecCCCceeccccHHHHHHHHHHHHhCCCCC--------CCceEEEeCC-CCcCHHH
Q 011707 322 GTALNRFCVQAAV----G-HPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP--------GEFRVFNQFT-EQFSVNQ 387 (479)
Q Consensus 322 ~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~--------g~~~~~ni~~-~~~s~~e 387 (479)
..++..++..+.. | .++.+++++++.++|+|++|+|++++.+++++... ++ +||+++ +.+|+.|
T Consensus 178 ~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~~~~~~--~~ni~~~~~~s~~e 255 (321)
T 1e6u_A 178 SHVIPALLRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLS--HINVGTGVDCTIRE 255 (321)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBC--CEEESCSCCEEHHH
T ss_pred CccHHHHHHHHHHhhhcCCCceEEcCCCCEEEEeEEHHHHHHHHHHHHhCcccccccccccCCc--eEEeCCCCCccHHH
Confidence 2345566666654 4 57778888899999999999999999999876542 34 999998 6799999
Q ss_pred HHHHHHHHhhhcCCcceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHhcc
Q 011707 388 LAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 388 l~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
+++.+.+. +|.+.++...+... .......+|++|+++|||+|+++++++++++++|++...+
T Consensus 256 ~~~~i~~~---~g~~~~~~~~~~~~--~~~~~~~~d~~k~~~lG~~p~~~~~~~l~~~~~~~~~~~~ 317 (321)
T 1e6u_A 256 LAQTIAKV---VGYKGRVVFDASKP--DGTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLENQD 317 (321)
T ss_dssp HHHHHHHH---HTCCSEEEEETTSC--CCCSBCCBCCHHHHHTTCCCCCCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHH---hCCCCceEeCCCCC--CCcccccCCHHHHHhcCCccCCcHHHHHHHHHHHHHHHHH
Confidence 99999998 88777766655432 2234567899999779999999999999999999876543
|
| >1kew_A RMLB;, DTDP-D-glucose 4,6-dehydratase; rossmann fold, lyase; HET: TYD NAD; 1.80A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1g1a_A* 1keu_A* 1bxk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=336.80 Aligned_cols=309 Identities=21% Similarity=0.296 Sum_probs=240.1
Q ss_pred cEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
|+||||||+||||++|+++|++. |++|++++|....... +.+..+. ...++.++.+|++|.+
T Consensus 1 MkvlVTGasG~iG~~l~~~L~~~~g~~V~~~~r~~~~~~~---------------~~~~~~~--~~~~~~~~~~Dl~d~~ 63 (361)
T 1kew_A 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNL---------------ESLSDIS--ESNRYNFEHADICDSA 63 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCG---------------GGGTTTT--TCTTEEEEECCTTCHH
T ss_pred CEEEEECCCchHhHHHHHHHHhcCCCeEEEEecCCCCCch---------------hhhhhhh--cCCCeEEEECCCCCHH
Confidence 47999999999999999999998 7999999985421100 0011110 1357899999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc--CCc------ceEEEeeccccccCC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF--RQE------CHLVKLGTMGEYGTP 237 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--g~~------~~~V~~SS~~v~g~~ 237 (479)
++.++++..++|+||||||........ .++..++++|+.|+.+++++|.+. +++ .+|||+||.++||..
T Consensus 64 ~~~~~~~~~~~d~vih~A~~~~~~~~~---~~~~~~~~~Nv~g~~~l~~a~~~~~~~v~~~~~~~~~iv~~SS~~v~g~~ 140 (361)
T 1kew_A 64 EITRIFEQYQPDAVMHLAAESHVDRSI---TGPAAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDL 140 (361)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHH---HCTHHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCC
T ss_pred HHHHHHhhcCCCEEEECCCCcChhhhh---hCHHHHHHHHHHHHHHHHHHHHHhccCcccccccCceEEEeCCHHHhCCC
Confidence 999999766899999999975422222 234667899999999999999987 653 399999999999875
Q ss_pred CC-----------CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchh
Q 011707 238 NI-----------DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 238 ~~-----------~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
.. ++.|+ .+..+.+.|+.+|+++|.+++.++.++|++++++||++||||+..+
T Consensus 141 ~~~~~~~~~~~~~~~~E~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~vrp~~v~G~~~~~-- 204 (361)
T 1kew_A 141 PHPDEVENSVTLPLFTET--------------TAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFP-- 204 (361)
T ss_dssp CCGGGSCTTSCCCCBCTT--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT--
T ss_pred cccccccccccCCCCCCC--------------CCCCCCCccHHHHHHHHHHHHHHHHHhCCcEEEEeeceeECCCCCc--
Confidence 42 23332 2445688999999999999999999899999999999999998643
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCH
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSV 385 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~ 385 (479)
..++..++..+..++++.+++++.+.++|+|++|+|++++.+++++. .|+ +||+++ ..+|+
T Consensus 205 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~-~g~--~~~v~~~~~~s~ 266 (361)
T 1kew_A 205 ---------------EKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGK-AGE--TYNIGGHNEKKN 266 (361)
T ss_dssp ---------------TSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCC-TTC--EEEECCCCEEEH
T ss_pred ---------------ccHHHHHHHHHHcCCCceEcCCCceeEeeEEHHHHHHHHHHHHhCCC-CCC--EEEecCCCeeeH
Confidence 12456677888888888888988899999999999999999998653 455 999999 56999
Q ss_pred HHHHHHHHHHhhhcCCcce--------eeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 386 NQLAALVTKAGEKLGLDVK--------TISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 386 ~el~~~i~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
.|+++.+.+. +|.+.+ +...+... .....+.+|++|+++ |||+|+++++++++++++|++...+
T Consensus 267 ~e~~~~i~~~---~g~~~~~~~p~~~~~~~~~~~~--~~~~~~~~d~~k~~~~lG~~p~~~~~e~l~~~~~~~~~~~~ 339 (361)
T 1kew_A 267 LDVVFTICDL---LDEIVPKATSYREQITYVADRP--GHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQ 339 (361)
T ss_dssp HHHHHHHHHH---HHHHSCCSSCGGGGEEEECCCT--TCCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHH---hCCcCccccccccceeecCCCC--cccceeecCHHHHHHHhCCCCccCHHHHHHHHHHHHHhccc
Confidence 9999999998 443321 11222111 122345689999987 9999999999999999999976543
|
| >2yy7_A L-threonine dehydrogenase; thermolabIle, flavobacterium FRIG KUC-1, oxidoreductase; HET: PE8 NAD MES; 2.06A {Flavobacterium frigidimaris} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-42 Score=335.51 Aligned_cols=304 Identities=12% Similarity=0.131 Sum_probs=233.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhC--CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNK--GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+|+|||||||||||++|+++|+++ |++|++++|..... + . ..++.++.+|++|
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~-----------------~-~-------~~~~~~~~~D~~d 56 (312)
T 2yy7_A 2 NPKILIIGACGQIGTELTQKLRKLYGTENVIASDIRKLNT-----------------D-V-------VNSGPFEVVNALD 56 (312)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHHHCGGGEEEEESCCCSC-----------------H-H-------HHSSCEEECCTTC
T ss_pred CceEEEECCccHHHHHHHHHHHHhCCCCEEEEEcCCCccc-----------------c-c-------cCCCceEEecCCC
Confidence 478999999999999999999999 89999999854310 0 0 0256789999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC--CC
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI--DI 241 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~--~~ 241 (479)
.+++.++++..++|+|||+||..... .. .++...+++|+.|+.+++++|++.+++ +|||+||.++|+.... +.
T Consensus 57 ~~~~~~~~~~~~~d~vih~a~~~~~~-~~---~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~SS~~~~~~~~~~~~~ 131 (312)
T 2yy7_A 57 FNQIEHLVEVHKITDIYLMAALLSAT-AE---KNPAFAWDLNMNSLFHVLNLAKAKKIK-KIFWPSSIAVFGPTTPKENT 131 (312)
T ss_dssp HHHHHHHHHHTTCCEEEECCCCCHHH-HH---HCHHHHHHHHHHHHHHHHHHHHTTSCS-EEECCEEGGGCCTTSCSSSB
T ss_pred HHHHHHHHhhcCCCEEEECCccCCCc-hh---hChHHHHHHHHHHHHHHHHHHHHcCCC-EEEEeccHHHhCCCCCCCCc
Confidence 99999999876899999999964321 11 234567899999999999999998887 9999999999987532 33
Q ss_pred cCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 242 EEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
.|+ .+..|.+.|+.+|+++|.+++.+++++|++++++||++||||+..+.. +.
T Consensus 132 ~e~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lrp~~v~g~~~~~~~------------~~- 184 (312)
T 2yy7_A 132 PQY--------------TIMEPSTVYGISKQAGERWCEYYHNIYGVDVRSIRYPGLISWSTPPGG------------GT- 184 (312)
T ss_dssp CSS--------------CBCCCCSHHHHHHHHHHHHHHHHHHHHCCEEECEEECEEECSSSCCCS------------CT-
T ss_pred ccc--------------CcCCCCchhHHHHHHHHHHHHHHHHhcCCcEEEEeCCeEecCCCCCCC------------ch-
Confidence 343 244668899999999999999998888999999999999998654311 00
Q ss_pred cchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCC-CCceEEEeCCCCcCHHHHHHHHHHHhhhcC
Q 011707 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP-GEFRVFNQFTEQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~-g~~~~~ni~~~~~s~~el~~~i~~~~~~~g 400 (479)
...+..++.....++++.+++++++.++|+|++|+|++++.+++++... +..++||++++.+|+.|+++.+.+. +|
T Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~~~ni~~~~~s~~e~~~~i~~~---~~ 261 (312)
T 2yy7_A 185 TDYAVDIFYKAIADKKYECFLSSETKMPMMYMDDAIDATINIMKAPVEKIKIHSSYNLAAMSFTPTEIANEIKKH---IP 261 (312)
T ss_dssp TTHHHHHHHHHHHTSEEEESSCTTCCEEEEEHHHHHHHHHHHHHSCGGGCCCSSCEECCSEEECHHHHHHHHHTT---CT
T ss_pred hhhHHHHHHHHHcCCCeEEecCCCceeeeeeHHHHHHHHHHHHhCcccccccCceEEeCCCccCHHHHHHHHHHH---CC
Confidence 1122333344455566777788888999999999999999999986541 1013999998779999999999998 66
Q ss_pred CcceeeecCCCCccc-ccccccCCchHHHH-cCCcccccHHHHHHHHHHHHH
Q 011707 401 LDVKTISVPNPRVEA-EEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAI 450 (479)
Q Consensus 401 ~~~~~~~~~~~~~~~-~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~ 450 (479)
..++.+.+..+... ......+|++|+++ |||+|+++++++++++++|++
T Consensus 262 -~~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~~~l~~~~~~~k 312 (312)
T 2yy7_A 262 -EFTITYEPDFRQKIADSWPASIDDSQAREDWDWKHTFDLESMTKDMIEHLS 312 (312)
T ss_dssp -TCEEEECCCTHHHHHTTSCSSBCCHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_pred -CCceEeccCccccccccccccCCHHHHHHHcCCCCCCCHHHHHHHHHHHhC
Confidence 23444444321111 11234689999987 999999999999999999873
|
| >3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-42 Score=334.76 Aligned_cols=296 Identities=22% Similarity=0.205 Sum_probs=239.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+|||||||||||++|+++|+++|++|++++|........... +..+ ....+++++.+|++
T Consensus 5 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~-------------~~~~--~~~~~~~~~~~Dl~- 68 (321)
T 3vps_A 5 TLKHRILITGGAGFIGGHLARALVASGEEVTVLDDLRVPPMIPPEG-------------TGKF--LEKPVLELEERDLS- 68 (321)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSSCCSSCCTT-------------SSEE--ECSCGGGCCHHHHT-
T ss_pred cCCCeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCcccccchhh-------------hhhh--ccCCCeeEEeCccc-
Confidence 3578999999999999999999999999999999865421000000 0000 11245667777765
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCc
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIE 242 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~ 242 (479)
++|+|||+||.........++ ...++ |+.++.+++++|++.+++ +|||+||.++||.... ++.
T Consensus 69 -----------~~d~vi~~a~~~~~~~~~~~~---~~~~~-n~~~~~~ll~a~~~~~v~-~~v~~SS~~v~~~~~~~~~~ 132 (321)
T 3vps_A 69 -----------DVRLVYHLASHKSVPRSFKQP---LDYLD-NVDSGRHLLALCTSVGVP-KVVVGSTCEVYGQADTLPTP 132 (321)
T ss_dssp -----------TEEEEEECCCCCCHHHHTTST---TTTHH-HHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCSSSSBC
T ss_pred -----------cCCEEEECCccCChHHHHhCH---HHHHH-HHHHHHHHHHHHHHcCCC-eEEEecCHHHhCCCCCCCCC
Confidence 689999999986654444443 34567 999999999999999987 9999999999998654 566
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCC-ceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGI-RATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl-~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
|+ .+..|.+.|+.+|+++|.+++.+++++|+ +++++||++||||+..+
T Consensus 133 E~--------------~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~----------------- 181 (321)
T 3vps_A 133 ED--------------SPLSPRSPYAASKVGLEMVAGAHQRASVAPEVGIVRFFNVYGPGERP----------------- 181 (321)
T ss_dssp TT--------------SCCCCCSHHHHHHHHHHHHHHHHHHSSSSCEEEEEEECEEECTTCCT-----------------
T ss_pred CC--------------CCCCCCChhHHHHHHHHHHHHHHHHHcCCCceEEEEeccccCcCCCC-----------------
Confidence 65 35567899999999999999999988899 99999999999998654
Q ss_pred cchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcC
Q 011707 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g 400 (479)
..++..++..+..++++.+++++.+.++|+|++|+|++++.+++++.. | +||+++ +.+|+.|+++.+. . +|
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~~~~~~~~~~~~-g---~~~i~~~~~~s~~e~~~~i~-~---~g 253 (321)
T 3vps_A 182 DALVPRLCANLLTRNELPVEGDGEQRRDFTYITDVVDKLVALANRPLP-S---VVNFGSGQSLSVNDVIRILQ-A---TS 253 (321)
T ss_dssp TSHHHHHHHHHHHHSEEEEETTSCCEECEEEHHHHHHHHHHGGGSCCC-S---EEEESCSCCEEHHHHHHHHH-T---TC
T ss_pred CChHHHHHHHHHcCCCeEEeCCCCceEceEEHHHHHHHHHHHHhcCCC-C---eEEecCCCcccHHHHHHHHH-H---hC
Confidence 235678888888999999999999999999999999999999998755 3 999998 6799999999999 8 89
Q ss_pred CcceeeecCCCCcccccccccCCchHHHH-cCCcc-cccHHHHHHHHHHHHHHh
Q 011707 401 LDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQP-HILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p-~~~~~~~~~~~~~~~~~~ 452 (479)
.+.++...+.... ....+.+|++|+++ |||+| +++++++++++++|++..
T Consensus 254 ~~~~~~~~~~~~~--~~~~~~~d~~k~~~~lG~~p~~~~~~~~l~~~~~~~~~~ 305 (321)
T 3vps_A 254 PAAEVARKQPRPN--EITEFRADTALQTRQIGERSGGIGIEEGIRLTLEWWQSR 305 (321)
T ss_dssp TTCEEEEECCCTT--CCSBCCBCCHHHHHHHCCCSCCCCHHHHHHHHHHHHHTS
T ss_pred CCCccccCCCCCC--CcceeeccHHHHHHHhCCCCCcCCHHHHHHHHHHHHHhC
Confidence 8888877765432 34456799999988 99999 889999999999999763
|
| >1t2a_A GDP-mannose 4,6 dehydratase; structural genomics consortium, rossman-fold, short-chain dehydrogenase/reductase, SDR, structural genomics,lyase; HET: NDP GDP; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-41 Score=335.26 Aligned_cols=319 Identities=19% Similarity=0.176 Sum_probs=240.4
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+||||||+||||++|+++|+++|++|++++|....... ..+ ..+. .........++.++.+|++|.++
T Consensus 25 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~---~~l~---~~~~~~~~~~~~~~~~Dl~d~~~ 93 (375)
T 1t2a_A 25 NVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNT-----GRI---EHLY---KNPQAHIEGNMKLHYGDLTDSTC 93 (375)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC-----TTT---GGGC------------CEEEEECCTTCHHH
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEECCccccch-----hhH---HHHh---hhhccccCCCceEEEccCCCHHH
Confidence 789999999999999999999999999999986432100 000 0000 00000012478899999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCC---cceEEEeeccccccCCCC-CCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ---ECHLVKLGTMGEYGTPNI-DIE 242 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~---~~~~V~~SS~~v~g~~~~-~~~ 242 (479)
+.++++..++|+||||||......... ++...+++|+.|+.+++++|++.++ + +|||+||.++|+.... ++.
T Consensus 94 ~~~~~~~~~~d~vih~A~~~~~~~~~~---~~~~~~~~N~~g~~~l~~a~~~~~~~~~~-~iv~~SS~~~~~~~~~~~~~ 169 (375)
T 1t2a_A 94 LVKIINEVKPTEIYNLGAQSHVKISFD---LAEYTADVDGVGTLRLLDAVKTCGLINSV-KFYQASTSELYGKVQEIPQK 169 (375)
T ss_dssp HHHHHHHHCCSEEEECCSCCCHHHHHH---SHHHHHHHHTHHHHHHHHHHHHTTCTTTC-EEEEEEEGGGTCSCSSSSBC
T ss_pred HHHHHHhcCCCEEEECCCccccccccc---CHHHHHHHHHHHHHHHHHHHHHhCCCccc-eEEEecchhhhCCCCCCCCC
Confidence 999998667899999999754322222 3456789999999999999999886 5 9999999999987543 555
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|+ .+..+.+.|+.+|+++|.+++.++.+++++++++||+++|||+..+.. ..
T Consensus 170 E~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~i~r~~~~~gp~~~~~~--------------~~ 221 (375)
T 1t2a_A 170 ET--------------TPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANF--------------VT 221 (375)
T ss_dssp TT--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTS--------------HH
T ss_pred cc--------------CCCCCCChhHHHHHHHHHHHHHHHHHhCCCEEEEecccccCCCCCCCc--------------ch
Confidence 54 244567899999999999999999989999999999999999754221 12
Q ss_pred chHHHHHHHHhcCC-CeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcC
Q 011707 323 TALNRFCVQAAVGH-PLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 323 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g 400 (479)
..+..++..+..+. +...++++++.++|+|++|+|++++.+++++. ++ +||+++ +.+|+.|+++.+.+. +|
T Consensus 222 ~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~~--~~--~~ni~~~~~~s~~e~~~~i~~~---~g 294 (375)
T 1t2a_A 222 RKISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDE--PE--DFVIATGEVHSVREFVEKSFLH---IG 294 (375)
T ss_dssp HHHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSSS--CC--CEEECCSCCEEHHHHHHHHHHH---TT
T ss_pred HHHHHHHHHHHcCCCceeEeCCCCceeeeEEHHHHHHHHHHHHhcCC--Cc--eEEEeCCCcccHHHHHHHHHHH---hC
Confidence 23455666667776 44567888899999999999999999998764 23 899998 679999999999998 77
Q ss_pred Ccceee-------------------ecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhccc
Q 011707 401 LDVKTI-------------------SVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDR 455 (479)
Q Consensus 401 ~~~~~~-------------------~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~ 455 (479)
.++++. ..+..........+.+|++|+++ |||+|+++++++++++++|+......
T Consensus 295 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~~~ 369 (375)
T 1t2a_A 295 KTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRT 369 (375)
T ss_dssp CCEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccccccccccccccceeecCcccCCcccchhhcCCHHHHHHhcCCCccCCHHHHHHHHHHHHHHhhcc
Confidence 765422 10100111122345689999987 99999999999999999999876543
|
| >1db3_A GDP-mannose 4,6-dehydratase; NADP, GDP-fucose, lyase; 2.30A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=335.43 Aligned_cols=316 Identities=22% Similarity=0.232 Sum_probs=239.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc---cCCCceeEEEcccC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS---LTGKNIELYIGDIC 162 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~~Dl~ 162 (479)
||+||||||+||||++++++|+++|++|++++|....... +.+..+.. ....++.++.+|++
T Consensus 1 m~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~Dl~ 65 (372)
T 1db3_A 1 SKVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNT---------------ERVDHIYQDPHTCNPKFHLHYGDLS 65 (372)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECC------------------------------------CCEEECCCCSS
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCcccch---------------HHHHHHhhccccCCCceEEEECCCC
Confidence 5799999999999999999999999999999886432100 00000000 01247889999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCC---cceEEEeeccccccCCCC
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ---ECHLVKLGTMGEYGTPNI 239 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~---~~~~V~~SS~~v~g~~~~ 239 (479)
|.+++.++++..++|+||||||........ .++...+++|+.|+.+++++|++.++ + +|||+||.++||....
T Consensus 66 d~~~~~~~~~~~~~d~vih~A~~~~~~~~~---~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~-~iv~~SS~~v~g~~~~ 141 (372)
T 1db3_A 66 DTSNLTRILREVQPDEVYNLGAMSHVAVSF---ESPEYTADVDAMGTLRLLEAIRFLGLEKKT-RFYQASTSELYGLVQE 141 (372)
T ss_dssp CHHHHHHHHHHHCCSEEEECCCCCTTTTTT---SCHHHHHHHHTHHHHHHHHHHHHTTCTTTC-EEEEEEEGGGGTTCCS
T ss_pred CHHHHHHHHHhcCCCEEEECCcccCccccc---cCHHHHHHHHHHHHHHHHHHHHHhCCCCCc-EEEEeCChhhhCCCCC
Confidence 999999999866789999999975533222 23456789999999999999999886 5 9999999999987653
Q ss_pred -CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCC
Q 011707 240 -DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318 (479)
Q Consensus 240 -~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~ 318 (479)
++.|+ .+..+.+.|+.+|+++|.+++.++.+++++++++|++++|||+..+..
T Consensus 142 ~~~~E~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~------------ 195 (372)
T 1db3_A 142 IPQKET--------------TPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETF------------ 195 (372)
T ss_dssp SSBCTT--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTS------------
T ss_pred CCCCcc--------------CCCCCCChHHHHHHHHHHHHHHHHHHhCCCeEEEEECCccCCCCCCcc------------
Confidence 45554 244567899999999999999999999999999999999999754311
Q ss_pred CcccchHHHHHHHHhcCC-CeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHh
Q 011707 319 GVFGTALNRFCVQAAVGH-PLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAG 396 (479)
Q Consensus 319 g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~ 396 (479)
....+..++..+..|+ +...++++++.++|+|++|+|++++.+++++. ++ +||+++ +.+|+.|+++.+.+.
T Consensus 196 --~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~i~v~Dva~a~~~~~~~~~--~~--~~ni~~~~~~s~~e~~~~i~~~- 268 (372)
T 1db3_A 196 --VTRKITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQ--PE--DFVIATGVQYSVRQFVEMAAAQ- 268 (372)
T ss_dssp --HHHHHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSSS--CC--CEEECCCCCEEHHHHHHHHHHT-
T ss_pred --hhhHHHHHHHHHHcCCCCceeecCCCceeeeeEHHHHHHHHHHHHhcCC--Cc--eEEEcCCCceeHHHHHHHHHHH-
Confidence 1223456666777776 35567888899999999999999999998754 33 899998 579999999999998
Q ss_pred hhcCCcceeee-----------------------------cCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHH
Q 011707 397 EKLGLDVKTIS-----------------------------VPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLL 446 (479)
Q Consensus 397 ~~~g~~~~~~~-----------------------------~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~ 446 (479)
+|.++++.. .+..........+.+|++|+++ |||+|+++++|++++++
T Consensus 269 --~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~ 346 (372)
T 1db3_A 269 --LGIKLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMV 346 (372)
T ss_dssp --TTEEEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHH
T ss_pred --hCCCcccccccccccccccccccccccccccccceeeccccccCCCchhhhccCHHHHHHHhCCccccCHHHHHHHHH
Confidence 776544221 0100011122345689999987 99999999999999999
Q ss_pred HHHHHhccc
Q 011707 447 NFAIQFKDR 455 (479)
Q Consensus 447 ~~~~~~~~~ 455 (479)
+|+......
T Consensus 347 ~~~~~~~~~ 355 (372)
T 1db3_A 347 ANDLEAAKK 355 (372)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHhhhc
Confidence 999876543
|
| >2z1m_A GDP-D-mannose dehydratase; short-chain dehydrogenase/reductase, lyase, structural genom NPPSFA; HET: NDP GDP; 2.00A {Aquifex aeolicus} PDB: 2z95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-41 Score=330.22 Aligned_cols=315 Identities=18% Similarity=0.192 Sum_probs=239.7
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|+|||||||||||++|+++|+++|++|++++|....... +.+..+. ...++.++.+|++|.
T Consensus 2 ~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~---------------~~~~~~~--~~~~~~~~~~Dl~d~ 64 (345)
T 2z1m_A 2 SGKRALITGIRGQDGAYLAKLLLEKGYEVYGADRRSGEFAS---------------WRLKELG--IENDVKIIHMDLLEF 64 (345)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCCSTTTT---------------HHHHHTT--CTTTEEECCCCTTCH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCCccccc---------------ccHhhcc--ccCceeEEECCCCCH
Confidence 47899999999999999999999999999999986432100 0111111 124688999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcC
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEE 243 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e 243 (479)
+++.++++..++|+||||||...... ...++...+++|+.|+.+++++|++.+++.+|||+||.++||.... ++.|
T Consensus 65 ~~~~~~~~~~~~d~vih~A~~~~~~~---~~~~~~~~~~~Nv~g~~~l~~a~~~~~~~~~iv~~SS~~vyg~~~~~~~~e 141 (345)
T 2z1m_A 65 SNIIRTIEKVQPDEVYNLAAQSFVGV---SFEQPILTAEVDAIGVLRILEALRTVKPDTKFYQASTSEMFGKVQEIPQTE 141 (345)
T ss_dssp HHHHHHHHHHCCSEEEECCCCCCHHH---HTTSHHHHHHHHTHHHHHHHHHHHHHCTTCEEEEEEEGGGGCSCSSSSBCT
T ss_pred HHHHHHHHhcCCCEEEECCCCcchhh---hhhCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEechhhcCCCCCCCCCc
Confidence 99999998667899999999754221 2233466789999999999999998886239999999999997653 4444
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
+ .+..+.+.|+.+|+++|.+++.++.+++++++++|++++|||+...+. +..
T Consensus 142 ~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~r~~~~~gpg~~~~~--------------~~~ 193 (345)
T 2z1m_A 142 K--------------TPFYPRSPYAVAKLFGHWITVNYREAYNMFACSGILFNHESPLRGIEF--------------VTR 193 (345)
T ss_dssp T--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTS--------------HHH
T ss_pred c--------------CCCCCCChhHHHHHHHHHHHHHHHHHhCCceEeeeeeeecCCCCCCcc--------------hhH
Confidence 3 244567899999999999999999999999999999999999854321 012
Q ss_pred hHHHHHHHHhcCCC-eEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCC
Q 011707 324 ALNRFCVQAAVGHP-LTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 324 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~ 401 (479)
.+..++.++..++. ..+++++.+.++|+|++|+|++++.+++++. ++ +||+++ +.+|+.|+++.+.+. +|.
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~a~~~~~~~~~--~~--~~~i~~~~~~s~~e~~~~i~~~---~g~ 266 (345)
T 2z1m_A 194 KITYSLARIKYGLQDKLVLGNLNAKRDWGYAPEYVEAMWLMMQQPE--PD--DYVIATGETHTVREFVEKAAKI---AGF 266 (345)
T ss_dssp HHHHHHHHHHTTSCSCEEESCTTCEECCEEHHHHHHHHHHHHTSSS--CC--CEEECCSCCEEHHHHHHHHHHH---TTC
T ss_pred HHHHHHHHHHcCCCCeeeeCCCCceeeeEEHHHHHHHHHHHHhCCC--Cc--eEEEeCCCCccHHHHHHHHHHH---hCC
Confidence 23445556666653 4456777888999999999999999998754 23 899998 679999999999998 777
Q ss_pred cceee-------------------ecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 402 DVKTI-------------------SVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 402 ~~~~~-------------------~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
+.++. ..+............+|++|+++ |||+|+++++++++++++|+.....
T Consensus 267 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~~~ 339 (345)
T 2z1m_A 267 DIEWVGEGINEKGIDRNTGKVIVEVSEEFFRPAEVDILVGNPEKAMKKLGWKPRTTFDELVEIMMEADLKRVR 339 (345)
T ss_dssp CEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred CccccccccccccccccccccccccCcccCCCCCcceeecCHHHHHHHcCCcccCCHHHHHHHHHHHHHHHhc
Confidence 65432 11100111122345679999987 9999999999999999999887544
|
| >2b69_A UDP-glucuronate decarboxylase 1; UDP-glucoronic acid decarboxylase, structural genomics, STRU genomics consortium, SGC, lyase; HET: MSE NAD UDP; 1.21A {Homo sapiens} SCOP: c.2.1.2 PDB: 4ef7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=329.58 Aligned_cols=307 Identities=24% Similarity=0.334 Sum_probs=239.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+|||||||||||++|+++|+++|++|++++|....... .+..+ ....++.++.+|++
T Consensus 24 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~----------------~~~~~--~~~~~~~~~~~D~~ 85 (343)
T 2b69_A 24 EKDRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKR----------------NVEHW--IGHENFELINHDVV 85 (343)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG----------------GTGGG--TTCTTEEEEECCTT
T ss_pred ccCCCEEEEEcCccHHHHHHHHHHHHCCCEEEEEeCCCccchh----------------hhhhh--ccCCceEEEeCccC
Confidence 3467899999999999999999999999999999985432110 01111 11247889999998
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CC
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DI 241 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~ 241 (479)
+.. +. ++|+|||+||.........+ +...+++|+.|+.+++++|++.+ .+|||+||.++||.... ++
T Consensus 86 ~~~-----~~--~~d~vih~A~~~~~~~~~~~---~~~~~~~n~~~~~~l~~a~~~~~--~~~v~~SS~~v~g~~~~~~~ 153 (343)
T 2b69_A 86 EPL-----YI--EVDQIYHLASPASPPNYMYN---PIKTLKTNTIGTLNMLGLAKRVG--ARLLLASTSEVYGDPEVHPQ 153 (343)
T ss_dssp SCC-----CC--CCSEEEECCSCCSHHHHTTC---HHHHHHHHHHHHHHHHHHHHHHT--CEEEEEEEGGGGBSCSSSSB
T ss_pred Chh-----hc--CCCEEEECccccCchhhhhC---HHHHHHHHHHHHHHHHHHHHHhC--CcEEEECcHHHhCCCCCCCC
Confidence 863 44 79999999997543322222 35678999999999999999987 38999999999987643 55
Q ss_pred cCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 242 EEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
.|+.+... .+..+.+.|+.+|+++|.+++.+++++|++++++||++||||+..+..
T Consensus 154 ~E~~~~~~---------~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilrp~~v~G~~~~~~~--------------- 209 (343)
T 2b69_A 154 SEDYWGHV---------NPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMND--------------- 209 (343)
T ss_dssp CTTCCCBC---------CSSSTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTC---------------
T ss_pred cccccccC---------CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEEcceeCcCCCCCc---------------
Confidence 55432111 234567899999999999999999888999999999999999764310
Q ss_pred cchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcC
Q 011707 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g 400 (479)
..++..++..+..++++.+++++.+.++|+|++|+|++++.+++.+. ++ +||+++ +.+|+.|+++.+.+. +|
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~--~~~i~~~~~~s~~e~~~~i~~~---~g 282 (343)
T 2b69_A 210 GRVVSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV--SS--PVNLGNPEEHTILEFAQLIKNL---VG 282 (343)
T ss_dssp CCHHHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSC--CS--CEEESCCCEEEHHHHHHHHHHH---HT
T ss_pred ccHHHHHHHHHHcCCCceEcCCCCeEEeeEeHHHHHHHHHHHHhcCC--CC--eEEecCCCCCcHHHHHHHHHHH---hC
Confidence 23566778888889998888988899999999999999999998653 44 899998 679999999999998 88
Q ss_pred CcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHh
Q 011707 401 LDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~ 452 (479)
.+.++...+.... ......+|++|+++ |||+|+++++++++++++|++..
T Consensus 283 ~~~~~~~~p~~~~--~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~ 333 (343)
T 2b69_A 283 SGSEIQFLSEAQD--DPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKE 333 (343)
T ss_dssp CCCCEEEECCCTT--CCCCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred CCCCceeCCCCCC--CCceecCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHHH
Confidence 7777766654321 23345689999987 99999999999999999998754
|
| >3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-41 Score=326.31 Aligned_cols=276 Identities=15% Similarity=0.123 Sum_probs=229.4
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||||||||++|+++|+++|++|++++|. .+|++|.+.
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~--------------------------------------~~D~~d~~~ 47 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFDKK--------------------------------------LLDITNISQ 47 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEECTT--------------------------------------TSCTTCHHH
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEeccc--------------------------------------ccCCCCHHH
Confidence 389999999999999999999999999998761 389999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGY 245 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~ 245 (479)
+.++++..++|+|||+||......... ++...+++|+.|+.+++++|++.++ +|||+||.++||.... ++.|+
T Consensus 48 ~~~~~~~~~~d~vi~~a~~~~~~~~~~---~~~~~~~~n~~~~~~l~~~~~~~~~--~~v~~SS~~vy~~~~~~~~~E~- 121 (287)
T 3sc6_A 48 VQQVVQEIRPHIIIHCAAYTKVDQAEK---ERDLAYVINAIGARNVAVASQLVGA--KLVYISTDYVFQGDRPEGYDEF- 121 (287)
T ss_dssp HHHHHHHHCCSEEEECCCCCCHHHHTT---CHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCCCCSSCBCTT-
T ss_pred HHHHHHhcCCCEEEECCcccChHHHhc---CHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEchhhhcCCCCCCCCCCC-
Confidence 999998767999999999765433322 3466789999999999999999884 7999999999987653 66665
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
.+..|.+.|+.+|+++|++++.+ +.+++++||++||||+.. .++
T Consensus 122 -------------~~~~p~~~Y~~sK~~~E~~~~~~----~~~~~ilR~~~v~G~~~~-------------------~~~ 165 (287)
T 3sc6_A 122 -------------HNPAPINIYGASKYAGEQFVKEL----HNKYFIVRTSWLYGKYGN-------------------NFV 165 (287)
T ss_dssp -------------SCCCCCSHHHHHHHHHHHHHHHH----CSSEEEEEECSEECSSSC-------------------CHH
T ss_pred -------------CCCCCCCHHHHHHHHHHHHHHHh----CCCcEEEeeeeecCCCCC-------------------cHH
Confidence 35567899999999999988765 447899999999999753 346
Q ss_pred HHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCcce
Q 011707 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVK 404 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~~ 404 (479)
..++..+..++++.++++ +.++|+|++|+|++++.+++++. ++ +||+++ +.+|+.|+++.+.+. +|.+.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~~~~--~~--~~~i~~~~~~s~~e~~~~i~~~---~g~~~~ 236 (287)
T 3sc6_A 166 KTMIRLGKEREEISVVAD--QIGSPTYVADLNVMINKLIHTSL--YG--TYHVSNTGSCSWFEFAKKIFSY---ANMKVN 236 (287)
T ss_dssp HHHHHHHTTCSEEEEECS--CEECCEEHHHHHHHHHHHHTSCC--CE--EEECCCBSCEEHHHHHHHHHHH---HTCCCE
T ss_pred HHHHHHHHcCCCeEeecC--cccCceEHHHHHHHHHHHHhCCC--CC--eEEEcCCCcccHHHHHHHHHHH---cCCCcc
Confidence 677888888888888764 78999999999999999999866 33 999999 679999999999998 888777
Q ss_pred eeecCC---CCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHH
Q 011707 405 TISVPN---PRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 405 ~~~~~~---~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
+...+. +..........+|++|+++|||+|.++++++++++++|++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~d~~k~~~lg~~p~~~~~~~l~~~~~~~~~ 286 (287)
T 3sc6_A 237 VLPVSTEEFGAAAARPKYSIFQHNMLRLNGFLQMPSWEEGLERFFIETKS 286 (287)
T ss_dssp EEEECHHHHCCSSCCCSBCCBCCHHHHHTTCCCCCBHHHHHHHHHHHTC-
T ss_pred eeeeehhhcCcccCCCCcccccHHHHHhhCCCCCccHHHHHHHHHHHHhc
Confidence 766543 22223334567899999999999999999999999998743
|
| >2x6t_A ADP-L-glycero-D-manno-heptose-6-epimerase; isomerase, carbohydrate metabolism, stress response; HET: NAP ADP BMA; 2.36A {Escherichia coli} PDB: 2x86_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-41 Score=332.38 Aligned_cols=301 Identities=16% Similarity=0.177 Sum_probs=235.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+++|+|||||||||||++|+++|+++| ++|++++|...... ...+ .++. +.+|++
T Consensus 44 ~~~~~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~------------------~~~~-----~~~~-~~~d~~ 99 (357)
T 2x6t_A 44 IEGRMIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK------------------FVNL-----VDLN-IADYMD 99 (357)
T ss_dssp ----CEEEETTTSHHHHHHHHHHHHTTCCCEEEEECCSSGGG------------------GGGT-----TTSC-CSEEEE
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCcEEEEEecCCCcch------------------hhcc-----cCce-EeeecC
Confidence 457899999999999999999999999 99999988643210 0001 1223 679999
Q ss_pred ChHHHHHHhhhc---CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC
Q 011707 163 DFEFLSESFKSF---EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI 239 (479)
Q Consensus 163 d~~~~~~~~~~~---~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~ 239 (479)
|.+.++++++.. ++|+|||+||.... ...++..++++|+.|+.+++++|++.++ +|||+||.++||....
T Consensus 100 ~~~~~~~~~~~~~~~~~d~Vih~A~~~~~-----~~~~~~~~~~~n~~~~~~ll~a~~~~~~--r~V~~SS~~v~g~~~~ 172 (357)
T 2x6t_A 100 KEDFLIQIMAGEEFGDVEAIFHEGACSST-----TEWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTS 172 (357)
T ss_dssp HHHHHHHHHTTCCCSSCCEEEECCSCCCT-----TCCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGCSCSS
T ss_pred cHHHHHHHHhhcccCCCCEEEECCcccCC-----ccCCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEcchHHhCCCCC
Confidence 999999988732 49999999997543 1223456789999999999999999875 8999999999987654
Q ss_pred -CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCC
Q 011707 240 -DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318 (479)
Q Consensus 240 -~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~ 318 (479)
++.|+ .+..|.+.|+.+|+++|.+++.++.++|++++++||++||||+..+.
T Consensus 173 ~~~~E~--------------~~~~p~~~Y~~sK~~~E~~~~~~~~~~g~~~~ilRp~~v~Gp~~~~~------------- 225 (357)
T 2x6t_A 173 DFIESR--------------EYEKPLNVFGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHK------------- 225 (357)
T ss_dssp CCCSSG--------------GGCCCSSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCTTC-------------
T ss_pred CCcCCc--------------CCCCCCChhHHHHHHHHHHHHHHHHHcCCCEEEEecCeEECCCCCCC-------------
Confidence 55554 24456789999999999999999888899999999999999986421
Q ss_pred CcccchHHHHHHHHhcCCCeEEecCCCc-eeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHh
Q 011707 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQ-TRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAG 396 (479)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~ 396 (479)
+.+...+..++..+..++++.+++++.+ .++|+|++|+|++++.+++++. ++ +||+++ +.+|+.|+++.+.+.
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~ai~~~~~~~~--~~--~~~i~~~~~~s~~e~~~~i~~~- 300 (357)
T 2x6t_A 226 GSMASVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV--SG--IFNLGTGRAESFQAVADATLAY- 300 (357)
T ss_dssp GGGSCHHHHHHHHHHTTCCCEEETTGGGCEECEEEHHHHHHHHHHHHHHCC--CE--EEEESCSCCEEHHHHHHHHHHH-
T ss_pred cccchHHHHHHHHHHcCCCcEEeCCCCcceEccEEHHHHHHHHHHHHhcCC--CC--eEEecCCCcccHHHHHHHHHHH-
Confidence 1113456778888888988888888888 9999999999999999998765 44 999998 679999999999998
Q ss_pred hhcCCcceeeecCCCC--cccccccccCCchHHHHcCC-cccccHHHHHHHHHHHHH
Q 011707 397 EKLGLDVKTISVPNPR--VEAEEHYYNAKHTKLIELGL-QPHILSDSLLDSLLNFAI 450 (479)
Q Consensus 397 ~~~g~~~~~~~~~~~~--~~~~~~~~~~d~~k~~~lG~-~p~~~~~~~~~~~~~~~~ 450 (479)
+|.+ ++...+.+. .........+|++|+++||| .|.++++++++++++|++
T Consensus 301 --~g~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~~lG~~~~~~~l~e~l~~~~~~~~ 354 (357)
T 2x6t_A 301 --HKKG-QIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWLN 354 (357)
T ss_dssp --HTCC-CCEEECCCGGGTTSCCSBCCCCCHHHHHTTCCCCCCCHHHHHHHHHHHHC
T ss_pred --cCCC-CceecCCCcccccccccccccCHHHHHHcCCCCCCCCHHHHHHHHHHHHh
Confidence 7766 333333222 11122345689999988999 788999999999999874
|
| >1n7h_A GDP-D-mannose-4,6-dehydratase; rossmann fold, SDR, short-chain dehydrogenase/reductase, LYA; HET: NDP GDP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1n7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-40 Score=330.84 Aligned_cols=317 Identities=20% Similarity=0.167 Sum_probs=237.8
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCC-ceeEEEcccCChH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGK-NIELYIGDICDFE 165 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~Dl~d~~ 165 (479)
|+||||||+||||++|+++|+++|++|++++|....... ..+. .+ ..... ..+. ++.++.+|++|.+
T Consensus 29 k~vlVtGatG~IG~~l~~~L~~~g~~V~~~~r~~~~~~~-----~~~~---~~---~~~~~-~~~~~~~~~~~~Dl~d~~ 96 (381)
T 1n7h_A 29 KIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNT-----QRIN---HI---YIDPH-NVNKALMKLHYADLTDAS 96 (381)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC-----TTTT---TT---C---------CCEEEEECCTTCHH
T ss_pred CeEEEEcCCchHHHHHHHHHHHCCCEEEEEecCCccccc-----hhhh---hh---hhccc-cccccceEEEECCCCCHH
Confidence 789999999999999999999999999999986432100 0000 00 00000 0112 7889999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCc----ceEEEeeccccccCCCCCC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQE----CHLVKLGTMGEYGTPNIDI 241 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~----~~~V~~SS~~v~g~~~~~~ 241 (479)
++.++++..++|+||||||......... ++...+++|+.|+.+++++|++.+++ .+|||+||.++||....++
T Consensus 97 ~~~~~~~~~~~d~Vih~A~~~~~~~~~~---~~~~~~~~nv~~~~~l~~a~~~~~~~~~~~~~~v~~SS~~vyg~~~~~~ 173 (381)
T 1n7h_A 97 SLRRWIDVIKPDEVYNLAAQSHVAVSFE---IPDYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQ 173 (381)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHHH---SHHHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSB
T ss_pred HHHHHHHhcCCCEEEECCcccCcccccc---CHHHHHHHHHHHHHHHHHHHHHhCCccCCccEEEEeCcHHHhCCCCCCC
Confidence 9999998666899999999754322222 34567899999999999999887632 3999999999999765455
Q ss_pred cCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 242 EEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
.|+ .+..+.+.|+.+|+++|.+++.++.+++++++++|++++|||+..... .
T Consensus 174 ~E~--------------~~~~~~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~r~~~~~gp~~~~~~--------------~ 225 (381)
T 1n7h_A 174 SET--------------TPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENF--------------V 225 (381)
T ss_dssp CTT--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTS--------------H
T ss_pred CCC--------------CCCCCCCchHHHHHHHHHHHHHHHHHhCCcEEEEEeCceeCCCCCCcc--------------h
Confidence 554 244668899999999999999999989999999999999999754211 1
Q ss_pred cchHHHHHHHHhcCCC-eEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhc
Q 011707 322 GTALNRFCVQAAVGHP-LTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKL 399 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~ 399 (479)
...+..++..+..+.. ...++++.+.++|+|++|+|++++.+++++. ++ +||+++ +.+|+.|+++.+.+. +
T Consensus 226 ~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~v~Dva~a~~~~~~~~~--~~--~~~i~~~~~~s~~e~~~~i~~~---~ 298 (381)
T 1n7h_A 226 TRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEK--PD--DYVVATEEGHTVEEFLDVSFGY---L 298 (381)
T ss_dssp HHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSS--CC--EEEECCSCEEEHHHHHHHHHHH---T
T ss_pred hHHHHHHHHHHHcCCCCeEEeCCCCceeeeEEHHHHHHHHHHHHhCCC--CC--eEEeeCCCCCcHHHHHHHHHHH---c
Confidence 1234455666666753 4456888899999999999999999998754 33 999998 579999999999998 7
Q ss_pred CCcce--eeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhc
Q 011707 400 GLDVK--TISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFK 453 (479)
Q Consensus 400 g~~~~--~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~ 453 (479)
|.+.. +...+..........+.+|++|+++ |||+|+++++++++++++|+....
T Consensus 299 g~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~l~e~l~~~~~~~~~~~ 355 (381)
T 1n7h_A 299 GLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLELA 355 (381)
T ss_dssp TCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred CCCcccccccCcccCCccccccccCCHHHHHHhcCCcccCCHHHHHHHHHHHHHhhc
Confidence 76532 2222211111223445689999987 999999999999999999987654
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-40 Score=326.45 Aligned_cols=291 Identities=14% Similarity=0.103 Sum_probs=224.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+|||||||||||++|+++|+++|++|++++|...... .+ ...+++++.+|++|.+
T Consensus 13 ~M~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~--------------------~l---~~~~~~~~~~Dl~d~~ 69 (342)
T 2x4g_A 13 HVKYAVLGATGLLGHHAARAIRAAGHDLVLIHRPSSQIQ--------------------RL---AYLEPECRVAEMLDHA 69 (342)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECTTSCGG--------------------GG---GGGCCEEEECCTTCHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecChHhhh--------------------hh---ccCCeEEEEecCCCHH
Confidence 469999999999999999999999999999998543110 00 1136889999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC--CCcC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI--DIEE 243 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~--~~~e 243 (479)
++.++++ ++|+|||+||.... ...++...+++|+.|+.+++++|++.+++ +|||+||.++|+.... ..+|
T Consensus 70 ~~~~~~~--~~d~vih~a~~~~~-----~~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~E 141 (342)
T 2x4g_A 70 GLERALR--GLDGVIFSAGYYPS-----RPRRWQEEVASALGQTNPFYAACLQARVP-RILYVGSAYAMPRHPQGLPGHE 141 (342)
T ss_dssp HHHHHTT--TCSEEEEC-----------------CHHHHHHHHHHHHHHHHHHHTCS-CEEEECCGGGSCCCTTSSCBCT
T ss_pred HHHHHHc--CCCEEEECCccCcC-----CCCCHHHHHHHHHHHHHHHHHHHHHcCCC-eEEEECCHHhhCcCCCCCCCCC
Confidence 9999998 89999999996431 11234567899999999999999999887 9999999999987543 2234
Q ss_pred CceeecCCCCCCCCCCCCCC----CchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCC-CchhhhHhhhcccCCC
Q 011707 244 GYITINHNGRTDTLPYPKQA----SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT-DETAMHEELCNRLDYD 318 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~----~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~-~~~~~~~~~~~~~~~~ 318 (479)
+ .+..| .+.|+.+|+++|.+++.+++. |++++++||++||||+. .+
T Consensus 142 ~--------------~~~~p~~~~~~~Y~~sK~~~e~~~~~~~~~-g~~~~ilrp~~v~g~~~~~~-------------- 192 (342)
T 2x4g_A 142 G--------------LFYDSLPSGKSSYVLCKWALDEQAREQARN-GLPVVIGIPGMVLGELDIGP-------------- 192 (342)
T ss_dssp T--------------CCCSSCCTTSCHHHHHHHHHHHHHHHHHHT-TCCEEEEEECEEECSCCSSC--------------
T ss_pred C--------------CCCCccccccChHHHHHHHHHHHHHHHhhc-CCcEEEEeCCceECCCCccc--------------
Confidence 3 23345 789999999999999998877 99999999999999975 21
Q ss_pred CcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhhh
Q 011707 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEK 398 (479)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~~ 398 (479)
. +..++..+..+..+.+ +++.++|+|++|+|++++.+++++.. ++ +||++++.+|+.|+++.+.+.
T Consensus 193 ----~-~~~~~~~~~~~~~~~~---~~~~~~~i~v~Dva~~~~~~~~~~~~-g~--~~~v~~~~~s~~e~~~~i~~~--- 258 (342)
T 2x4g_A 193 ----T-TGRVITAIGNGEMTHY---VAGQRNVIDAAEAGRGLLMALERGRI-GE--RYLLTGHNLEMADLTRRIAEL--- 258 (342)
T ss_dssp ----S-TTHHHHHHHTTCCCEE---ECCEEEEEEHHHHHHHHHHHHHHSCT-TC--EEEECCEEEEHHHHHHHHHHH---
T ss_pred ----c-HHHHHHHHHcCCCccc---cCCCcceeeHHHHHHHHHHHHhCCCC-Cc--eEEEcCCcccHHHHHHHHHHH---
Confidence 1 2345666777776655 46788999999999999999987654 55 999999339999999999998
Q ss_pred cCCcceeeecCCCC---------------c-------c---cccccccCCchHHHH-cCC-cccccHHHHHHHHHHHHHH
Q 011707 399 LGLDVKTISVPNPR---------------V-------E---AEEHYYNAKHTKLIE-LGL-QPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 399 ~g~~~~~~~~~~~~---------------~-------~---~~~~~~~~d~~k~~~-lG~-~p~~~~~~~~~~~~~~~~~ 451 (479)
+|.+.++ ..+... + . .......+|++|+++ ||| +| ++++++++++++|++.
T Consensus 259 ~g~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~~p-~~~~~~l~~~~~~~~~ 336 (342)
T 2x4g_A 259 LGQPAPQ-PMSMAMARALATLGRLRYRVSGQLPLLDETAIEVMAGGQFLDGRKAREELGFFST-TALDDTLLRAIDWFRD 336 (342)
T ss_dssp HTCCCCE-EECHHHHHHHHHHHHC----------------CCTTCCCCBCCHHHHHHHCCCCC-SCHHHHHHHHHHHHHH
T ss_pred hCCCCCC-cCCHHHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHhcCcccChHHHHHhCCCCCC-CCHHHHHHHHHHHHHH
Confidence 7776654 433210 0 0 012355689999987 999 99 8999999999999875
Q ss_pred h
Q 011707 452 F 452 (479)
Q Consensus 452 ~ 452 (479)
.
T Consensus 337 ~ 337 (342)
T 2x4g_A 337 N 337 (342)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >1eq2_A ADP-L-glycero-D-mannoheptose 6-epimerase; N-terminal domain rossmann fold, C-terminal mixed alpha/beta domain; HET: NAP ADQ; 2.00A {Escherichia coli} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-41 Score=327.37 Aligned_cols=298 Identities=16% Similarity=0.183 Sum_probs=215.1
Q ss_pred EEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
+|||||||||||++|+++|+++| ++|++++|...... ...+ .++. +.+|++|.+.
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~g~~~V~~~~r~~~~~~------------------~~~~-----~~~~-~~~d~~~~~~ 56 (310)
T 1eq2_A 1 MIIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTK------------------FVNL-----VDLN-IADYMDKEDF 56 (310)
T ss_dssp CEEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGG------------------GHHH-----HTSC-CSEEEEHHHH
T ss_pred CEEEEcCccHHHHHHHHHHHHCCCcEEEEEccCCCCch------------------hhhc-----Ccce-eccccccHHH
Confidence 48999999999999999999999 99999988643210 0011 1222 6799999999
Q ss_pred HHHHhhhc---CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCc
Q 011707 167 LSESFKSF---EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIE 242 (479)
Q Consensus 167 ~~~~~~~~---~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~ 242 (479)
++++++.. ++|+|||+||.... . ..++..++++|+.|+.+++++|++.++ +|||+||.++||.... ++.
T Consensus 57 ~~~~~~~~~~~~~d~vi~~a~~~~~--~---~~~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~v~g~~~~~~~~ 129 (310)
T 1eq2_A 57 LIQIMAGEEFGDVEAIFHEGACSST--T---EWDGKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIE 129 (310)
T ss_dssp HHHHHTTCCCSSCCEEEECCSCCCT--T---CCCHHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGTTCCSCBCS
T ss_pred HHHHHhccccCCCcEEEECcccccC--c---ccCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEEeeHHHhCCCCCCCCC
Confidence 99998731 49999999997543 1 123456789999999999999999885 8999999999987654 555
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|+ .+..|.+.|+.+|+++|.+++.+++++|++++++||++||||+..+. +.+.
T Consensus 130 E~--------------~~~~p~~~Y~~sK~~~e~~~~~~~~~~g~~~~~lrp~~v~G~~~~~~-------------~~~~ 182 (310)
T 1eq2_A 130 SR--------------EYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHK-------------GSMA 182 (310)
T ss_dssp SG--------------GGCCCSSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGG-------------GGGS
T ss_pred CC--------------CCCCCCChhHHHHHHHHHHHHHHHHHcCCCEEEEeCCcEECcCCCCC-------------Cccc
Confidence 54 24456789999999999999999888899999999999999986431 1113
Q ss_pred chHHHHHHHHhcCCCeEEecCCCc-eeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcC
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQ-TRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g 400 (479)
.++..++..+..++++.+++++.+ .++|+|++|+|++++.+++++. ++ +||+++ +.+|+.|+++.+.+. +|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~i~v~Dva~~~~~~~~~~~--~~--~~~i~~~~~~s~~e~~~~i~~~---~g 255 (310)
T 1eq2_A 183 SVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGV--SG--IFNLGTGRAESFQAVADATLAY---HK 255 (310)
T ss_dssp CHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCC--CE--EEEESCSCCBCHHHHHHHC--------
T ss_pred hHHHHHHHHHHcCCCcEEecCCCcceEccEEHHHHHHHHHHHHhcCC--CC--eEEEeCCCccCHHHHHHHHHHH---cC
Confidence 456778888888888888888888 9999999999999999998765 44 999998 689999999999998 67
Q ss_pred Cc-ceeeecCCCCcccccccccCCchHHHHcCC-cccccHHHHHHHHHHHHH
Q 011707 401 LD-VKTISVPNPRVEAEEHYYNAKHTKLIELGL-QPHILSDSLLDSLLNFAI 450 (479)
Q Consensus 401 ~~-~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~-~p~~~~~~~~~~~~~~~~ 450 (479)
.+ ++....+............+|++|+++||| .|.++++++++++++|++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~l~~~l~~~~~~~~ 307 (310)
T 1eq2_A 256 KGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWLN 307 (310)
T ss_dssp ----------------CCCSCCBCCHHHHHTTCCCCCCCHHHHHHHHHHHTC
T ss_pred CCCceeCCCChhhhcccccccccchHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 65 332222221111122345689999988999 788999999999998764
|
| >2pzm_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, protein-nucleotide comple binding protein; HET: NAD UDP; 2.00A {Bordetella bronchiseptica} PDB: 2pzl_A* 2pzk_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-40 Score=324.93 Aligned_cols=292 Identities=20% Similarity=0.264 Sum_probs=229.4
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..+++|+||||||+||||++|+++|+++|++|++++|....... ....+ .++.++.+|+
T Consensus 16 ~~~~~~~vlVTGasG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------------------~~~~l--~~v~~~~~Dl 74 (330)
T 2pzm_A 16 PRGSHMRILITGGAGCLGSNLIEHWLPQGHEILVIDNFATGKRE-------------------VLPPV--AGLSVIEGSV 74 (330)
T ss_dssp STTTCCEEEEETTTSHHHHHHHHHHGGGTCEEEEEECCSSSCGG-------------------GSCSC--TTEEEEECCT
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCccchh-------------------hhhcc--CCceEEEeeC
Confidence 35678999999999999999999999999999999985432100 00111 4788999999
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC--
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-- 239 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-- 239 (479)
+|.+++.++++..++|+||||||..... ... ++. +++|+.|+.+++++|.+.+++ +|||+||.++|+....
T Consensus 75 ~d~~~~~~~~~~~~~D~vih~A~~~~~~-~~~---~~~--~~~N~~~~~~l~~a~~~~~~~-~iV~~SS~~~~~~~~~~~ 147 (330)
T 2pzm_A 75 TDAGLLERAFDSFKPTHVVHSAAAYKDP-DDW---AED--AATNVQGSINVAKAASKAGVK-RLLNFQTALCYGRPATVP 147 (330)
T ss_dssp TCHHHHHHHHHHHCCSEEEECCCCCSCT-TCH---HHH--HHHHTHHHHHHHHHHHHHTCS-EEEEEEEGGGGCSCSSSS
T ss_pred CCHHHHHHHHhhcCCCEEEECCccCCCc-ccc---Chh--HHHHHHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCccCC
Confidence 9999999999866799999999976532 112 223 789999999999999998877 9999999999986532
Q ss_pred -CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCC
Q 011707 240 -DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318 (479)
Q Consensus 240 -~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~ 318 (479)
+++|+ . .+.+.|+.+|+++|.+++.+ +++++++||+++|||+..
T Consensus 148 ~~~~E~--------------~--~~~~~Y~~sK~~~e~~~~~~----~~~~~~iR~~~v~gp~~~--------------- 192 (330)
T 2pzm_A 148 IPIDSP--------------T--APFTSYGISKTAGEAFLMMS----DVPVVSLRLANVTGPRLA--------------- 192 (330)
T ss_dssp BCTTCC--------------C--CCCSHHHHHHHHHHHHHHTC----SSCEEEEEECEEECTTCC---------------
T ss_pred CCcCCC--------------C--CCCChHHHHHHHHHHHHHHc----CCCEEEEeeeeeECcCCC---------------
Confidence 44443 1 35789999999999988765 899999999999999852
Q ss_pred CcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHH-HHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHh
Q 011707 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQ-CVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAG 396 (479)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~-a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~ 396 (479)
..++..++..+..+. .+++++. .++|+|++|+|+ +++.+++++. ++ +||+++ ..+|+.|+++.+.+.
T Consensus 193 ---~~~~~~~~~~~~~~~--~~~~~~~-~~~~i~~~Dva~~a~~~~~~~~~--g~--~~~v~~~~~~s~~e~~~~i~~~- 261 (330)
T 2pzm_A 193 ---IGPIPTFYKRLKAGQ--KCFCSDT-VRDFLDMSDFLAIADLSLQEGRP--TG--VFNVSTGEGHSIKEVFDVVLDY- 261 (330)
T ss_dssp ---SSHHHHHHHHHHTTC--CCCEESC-EECEEEHHHHHHHHHHHTSTTCC--CE--EEEESCSCCEEHHHHHHHHHHH-
T ss_pred ---CCHHHHHHHHHHcCC--EEeCCCC-EecceeHHHHHHHHHHHHhhcCC--CC--EEEeCCCCCCCHHHHHHHHHHH-
Confidence 224556666666665 4556666 889999999999 9999998754 44 999998 579999999999998
Q ss_pred hhcCCcceeeecCCCCcccccccccCCchHH-----HHcCCcccccHHHHHHHHHHHHHHhc
Q 011707 397 EKLGLDVKTISVPNPRVEAEEHYYNAKHTKL-----IELGLQPHILSDSLLDSLLNFAIQFK 453 (479)
Q Consensus 397 ~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~-----~~lG~~p~~~~~~~~~~~~~~~~~~~ 453 (479)
+|.+ ++...+.+. ......+|++|+ ++|||+|+++++++++++++|++.+.
T Consensus 262 --~g~~-~~~~~~~~~---~~~~~~~d~~k~~~~~l~~lG~~p~~~~~~~l~~~~~~~~~~~ 317 (330)
T 2pzm_A 262 --VGAT-LAEPVPVVA---PGADDVPSVVLDPSKTETEFGWKAKVDFKDTITGQLAWYDKYG 317 (330)
T ss_dssp --HTCC-CSSCCCEEC---CCTTSCSEECBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred --hCCC-CceeCCCCc---chhhccCCHHHHhhchHHHcCCcccCCHHHHHHHHHHHHHhhC
Confidence 7766 443333221 234456788888 77999999999999999999998653
|
| >3ajr_A NDP-sugar epimerase; L-threonine dehydrogenase, L-3- hydroxynorvaline, oxidoreductase; HET: NAD; 1.77A {Thermoplasma volcanium} PDB: 3a9w_A* 3a4v_A* 3a1n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-40 Score=320.59 Aligned_cols=299 Identities=15% Similarity=0.172 Sum_probs=230.1
Q ss_pred EEEEEcCCchhhHHHHHHHHhC--CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 88 RVMIIGGDGYCGWATALHLSNK--GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+||||||+||||++|+++|+++ |++|++++|..... .++.++.+|++|++
T Consensus 1 ~vlVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~----------------------------~~~~~~~~D~~d~~ 52 (317)
T 3ajr_A 1 MILVTGSSGQIGTELVPYLAEKYGKKNVIASDIVQRDT----------------------------GGIKFITLDVSNRD 52 (317)
T ss_dssp CEEEESTTSTTHHHHHHHHHHHHCGGGEEEEESSCCCC----------------------------TTCCEEECCTTCHH
T ss_pred CEEEEcCCcHHHHHHHHHHHHhcCCCEEEEecCCCccc----------------------------cCceEEEecCCCHH
Confidence 4899999999999999999999 89999998753210 14678899999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC--CCcC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI--DIEE 243 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~--~~~e 243 (479)
++.++++..++|+|||+||..... .. .++...+++|+.|+.+++++|++.+++ +|||+||.++|+.... +..|
T Consensus 53 ~~~~~~~~~~~d~vih~a~~~~~~-~~---~~~~~~~~~n~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~e 127 (317)
T 3ajr_A 53 EIDRAVEKYSIDAIFHLAGILSAK-GE---KDPALAYKVNMNGTYNILEAAKQHRVE-KVVIPSTIGVFGPETPKNKVPS 127 (317)
T ss_dssp HHHHHHHHTTCCEEEECCCCCHHH-HH---HCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGCCTTSCSSSBCS
T ss_pred HHHHHHhhcCCcEEEECCcccCCc-cc---cChHHHhhhhhHHHHHHHHHHHHcCCC-EEEEecCHHHhCCCCCCCCccc
Confidence 999999866799999999964321 11 233567899999999999999999887 9999999999986431 3333
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
+ .+..|.+.|+.+|+++|.+++.+++++|++++++||+++||+...+.. + ...
T Consensus 128 ~--------------~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~lR~~~~~g~~~~~~~------------~-~~~ 180 (317)
T 3ajr_A 128 I--------------TITRPRTMFGVTKIAAELLGQYYYEKFGLDVRSLRYPGIISYKAEPTA------------G-TTD 180 (317)
T ss_dssp S--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSSSCCCS------------C-SST
T ss_pred c--------------ccCCCCchHHHHHHHHHHHHHHHHHhcCCeEEEEecCcEeccCCCCCC------------c-chh
Confidence 3 244678999999999999999998888999999999999998643210 0 011
Q ss_pred hHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC---CCCceEEEeCCCCcCHHHHHHHHHHHhhhcC
Q 011707 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ---PGEFRVFNQFTEQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~---~g~~~~~ni~~~~~s~~el~~~i~~~~~~~g 400 (479)
.+..++.....++.+.+++++++.++|+|++|+|++++.+++++.. .++ +||++++.+|+.|+++.+.+. +|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~l~~~~~~~~~g~--~~~i~~~~~s~~e~~~~i~~~---~~ 255 (317)
T 3ajr_A 181 YAVEIFYYAVKREKYKCYLAPNRALPMMYMPDALKALVDLYEADRDKLVLRN--GYNVTAYTFTPSELYSKIKER---IP 255 (317)
T ss_dssp HHHHHHHHHHTTCCEEECSCTTCCEEEEEHHHHHHHHHHHHHCCGGGCSSCS--CEECCSEEECHHHHHHHHHTT---CC
T ss_pred HHHHHHHHHHhCCCceeecCccceeeeeEHHHHHHHHHHHHhCCccccccCc--eEecCCccccHHHHHHHHHHH---CC
Confidence 2233344555666677777778889999999999999999987643 234 999998779999999999997 66
Q ss_pred CcceeeecCCCCccc-ccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHh
Q 011707 401 LDVKTISVPNPRVEA-EEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 401 ~~~~~~~~~~~~~~~-~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~ 452 (479)
. .++.+.+..+... ......+|++|+++ |||+|+++++++++++++|++..
T Consensus 256 ~-~~i~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~~~~l~~~~~~~~~~ 308 (317)
T 3ajr_A 256 E-FEIEYKEDFRDKIAATWPESLDSSEASNEWGFSIEYDLDRTIDDMIDHISEK 308 (317)
T ss_dssp S-CCEEECCCHHHHHHTTSCSCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
T ss_pred c-cccccccccchhhccccccccCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhh
Confidence 2 2333333211111 11234589999987 99999999999999999998653
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-41 Score=322.15 Aligned_cols=273 Identities=18% Similarity=0.174 Sum_probs=220.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|+||||| +||||++|+++|+++|++|++++|.... ...+++++.+|++|.
T Consensus 2 ~~~~ilVtG-aG~iG~~l~~~L~~~g~~V~~~~r~~~~---------------------------~~~~~~~~~~Dl~d~ 53 (286)
T 3gpi_A 2 SLSKILIAG-CGDLGLELARRLTAQGHEVTGLRRSAQP---------------------------MPAGVQTLIADVTRP 53 (286)
T ss_dssp CCCCEEEEC-CSHHHHHHHHHHHHTTCCEEEEECTTSC---------------------------CCTTCCEEECCTTCG
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCEEEEEeCCccc---------------------------cccCCceEEccCCCh
Confidence 467999999 5999999999999999999999986431 025789999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcC
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEE 243 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e 243 (479)
+++.++++. ++|+|||+||... .+ ....+++|+.++.+++++|++.+++ +|||+||.++||.... ++.|
T Consensus 54 ~~~~~~~~~-~~d~vih~a~~~~-----~~---~~~~~~~n~~~~~~ll~a~~~~~~~-~~v~~SS~~vyg~~~~~~~~E 123 (286)
T 3gpi_A 54 DTLASIVHL-RPEILVYCVAASE-----YS---DEHYRLSYVEGLRNTLSALEGAPLQ-HVFFVSSTGVYGQEVEEWLDE 123 (286)
T ss_dssp GGCTTGGGG-CCSEEEECHHHHH-----HC--------CCSHHHHHHHHHHTTTSCCC-EEEEEEEGGGCCCCCSSEECT
T ss_pred HHHHHhhcC-CCCEEEEeCCCCC-----CC---HHHHHHHHHHHHHHHHHHHhhCCCC-EEEEEcccEEEcCCCCCCCCC
Confidence 999999983 4999999998632 12 2456789999999999999998887 9999999999998654 4555
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
+ .+..|.+.|+.+|+++|.+ +.+ ++++++||++||||+..
T Consensus 124 ~--------------~~~~p~~~Y~~sK~~~E~~-~~~-----~~~~ilR~~~v~G~~~~-------------------- 163 (286)
T 3gpi_A 124 D--------------TPPIAKDFSGKRMLEAEAL-LAA-----YSSTILRFSGIYGPGRL-------------------- 163 (286)
T ss_dssp T--------------SCCCCCSHHHHHHHHHHHH-GGG-----SSEEEEEECEEEBTTBC--------------------
T ss_pred C--------------CCCCCCChhhHHHHHHHHH-Hhc-----CCeEEEecccccCCCch--------------------
Confidence 5 3556789999999999998 543 99999999999999743
Q ss_pred hHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC--CCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcC
Q 011707 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP--AQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~--~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g 400 (479)
.++..+.. +. ..+++++.++|+|++|+|++++.+++++ ...++ +||+++ +.+|+.|+++.+.+. +|
T Consensus 164 ---~~~~~~~~-~~--~~~~~~~~~~~i~v~Dva~~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~e~~~~i~~~---~g 232 (286)
T 3gpi_A 164 ---RMIRQAQT-PE--QWPARNAWTNRIHRDDGAAFIAYLIQQRSHAVPER--LYIVTDNQPLPVHDLLRWLADR---QG 232 (286)
T ss_dssp ---HHHHHTTC-GG--GSCSSBCEECEEEHHHHHHHHHHHHHHHTTSCCCS--EEEECCSCCEEHHHHHHHHHHH---TT
T ss_pred ---hHHHHHHh-cc--cCCCcCceeEEEEHHHHHHHHHHHHhhhccCCCCc--eEEEeCCCCCCHHHHHHHHHHH---cC
Confidence 23444444 32 2366788899999999999999999985 33454 999998 679999999999998 88
Q ss_pred CcceeeecCCCCcccccccccCCchHHHHcCCcccc-cHHHHHHHHHHHHHH
Q 011707 401 LDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHI-LSDSLLDSLLNFAIQ 451 (479)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~-~~~~~~~~~~~~~~~ 451 (479)
.+.++...+ .......+|++|+++|||+|++ +++++++++++|...
T Consensus 233 ~~~~~~~~~-----~~~~~~~~d~~k~~~lG~~p~~~~l~e~l~~~~~~~~~ 279 (286)
T 3gpi_A 233 IAYPAGATP-----PVQGNKKLSNARLLASGYQLIYPDYVSGYGALLAAMRE 279 (286)
T ss_dssp CCCCCSCCC-----CBCSSCEECCHHHHHTTCCCSSCSHHHHHHHHHHHHTC
T ss_pred CCCCCCCCc-----ccCCCeEeeHHHHHHcCCCCcCCcHHHHHHHHHHHHhc
Confidence 776655433 2344567899999999999999 799999999999864
|
| >2q1w_A Putative nucleotide sugar epimerase/ dehydratase; rossman fold, protein-NAD complex, sugar binding protein; HET: NAD; 2.19A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-39 Score=321.05 Aligned_cols=293 Identities=18% Similarity=0.221 Sum_probs=225.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+|||||||||||++|+++|+++|++|++++|....... .+..+ .++.++.+|++
T Consensus 18 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-------------------~l~~~--~~~~~~~~Dl~ 76 (333)
T 2q1w_A 18 GSHMKKVFITGICGQIGSHIAELLLERGDKVVGIDNFATGRRE-------------------HLKDH--PNLTFVEGSIA 76 (333)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGG-------------------GSCCC--TTEEEEECCTT
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCCccchh-------------------hHhhc--CCceEEEEeCC
Confidence 3468899999999999999999999999999999986432100 01111 47889999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccccc----CCC
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG----TPN 238 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g----~~~ 238 (479)
|++++.++++..++|+||||||..... ...+ +. +++|+.|+.+++++|++.+++ +|||+||.++|| ...
T Consensus 77 d~~~~~~~~~~~~~D~vih~A~~~~~~-~~~~---~~--~~~N~~~~~~l~~a~~~~~~~-~iV~~SS~~~~g~~~~~~~ 149 (333)
T 2q1w_A 77 DHALVNQLIGDLQPDAVVHTAASYKDP-DDWY---ND--TLTNCVGGSNVVQAAKKNNVG-RFVYFQTALCYGVKPIQQP 149 (333)
T ss_dssp CHHHHHHHHHHHCCSEEEECCCCCSCT-TCHH---HH--HHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGCSCCCSSS
T ss_pred CHHHHHHHHhccCCcEEEECceecCCC-ccCC---hH--HHHHHHHHHHHHHHHHHhCCC-EEEEECcHHHhCCCcccCC
Confidence 999999999844599999999976533 2222 22 789999999999999998877 999999999998 433
Q ss_pred CCCcCCceeecCCCCCCCCCCCCCCC-chhhhhhHHHHHHHHH-HHHHhCCceEEeecCeeecCCCCchhhhHhhhcccC
Q 011707 239 IDIEEGYITINHNGRTDTLPYPKQAS-SFYHLSKVHDSHNIAF-TCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLD 316 (479)
Q Consensus 239 ~~~~e~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~~~E~~~~~-~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~ 316 (479)
.+++|+ . .|. +.|+.+|+++|.+++. ++ +++++||+++|||+..
T Consensus 150 ~~~~E~---------------~-~p~~~~Y~~sK~~~E~~~~~s~~-----~~~ilR~~~v~gp~~~------------- 195 (333)
T 2q1w_A 150 VRLDHP---------------R-NPANSSYAISKSANEDYLEYSGL-----DFVTFRLANVVGPRNV------------- 195 (333)
T ss_dssp BCTTSC---------------C-CCTTCHHHHHHHHHHHHHHHHTC-----CEEEEEESEEESTTCC-------------
T ss_pred CCcCCC---------------C-CCCCCchHHHHHHHHHHHHhhhC-----CeEEEeeceEECcCCc-------------
Confidence 234443 1 345 8999999999999876 54 7999999999999731
Q ss_pred CCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHH
Q 011707 317 YDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKA 395 (479)
Q Consensus 317 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~ 395 (479)
..++..++..+..+. .+++ +.+.++|+|++|+|++++.+++++. ++ +||+++ ..+|+.|+++.+.+.
T Consensus 196 -----~~~~~~~~~~~~~~~--~~~~-~~~~~~~i~v~Dva~ai~~~~~~~~--g~--~~~v~~~~~~s~~e~~~~i~~~ 263 (333)
T 2q1w_A 196 -----SGPLPIFFQRLSEGK--KCFV-TKARRDFVFVKDLARATVRAVDGVG--HG--AYHFSSGTDVAIKELYDAVVEA 263 (333)
T ss_dssp -----SSHHHHHHHHHHTTC--CCEE-EECEECEEEHHHHHHHHHHHHTTCC--CE--EEECSCSCCEEHHHHHHHHHHH
T ss_pred -----CcHHHHHHHHHHcCC--eeeC-CCceEeeEEHHHHHHHHHHHHhcCC--CC--EEEeCCCCCccHHHHHHHHHHH
Confidence 124566677777766 3445 5678999999999999999998765 44 999998 679999999999998
Q ss_pred hhhcCCcceeeecCCCC--cccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHhc
Q 011707 396 GEKLGLDVKTISVPNPR--VEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFK 453 (479)
Q Consensus 396 ~~~~g~~~~~~~~~~~~--~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~~ 453 (479)
+|.+ ++...+.+. .........+|++|++++||+|+++++++++++++|++...
T Consensus 264 ---~g~~-~~~~~~~~~~~~~~~~~~~~~d~~k~~~~G~~p~~~~~~~l~~~~~~~~~~~ 319 (333)
T 2q1w_A 264 ---MALP-SYPEPEIRELGPDDAPSILLDPSRTIQDFGKIEFTPLKETVAAAVAYFREYG 319 (333)
T ss_dssp ---TTCS-SCCCCEEEECCTTSCCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHC
T ss_pred ---hCCC-CceeCCCCCcccccccccccCCHHHHHhcCCCcCCCHHHHHHHHHHHHHHHC
Confidence 7765 333322211 11112456789999987799999999999999999998653
|
| >2ydy_A Methionine adenosyltransferase 2 subunit beta; oxidoreductase; 2.25A {Homo sapiens} PDB: 2ydx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-40 Score=320.97 Aligned_cols=291 Identities=14% Similarity=0.135 Sum_probs=201.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+|||||||||||++|+++|+++|++|++++|.... .+ ++.+|++|++
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~-----------------------------~~--~~~~Dl~d~~ 50 (315)
T 2ydy_A 2 NRRVLVTGATGLLGRAVHKEFQQNNWHAVGCGFRRAR-----------------------------PK--FEQVNLLDSN 50 (315)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHTTTCEEEEEC------------------------------------------------
T ss_pred CCeEEEECCCcHHHHHHHHHHHhCCCeEEEEccCCCC-----------------------------CC--eEEecCCCHH
Confidence 5799999999999999999999999999999874320 12 6789999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCc
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGY 245 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~ 245 (479)
++.++++..++|+||||||........ .++...+++|+.|+.+++++|++.+ .+|||+||.++|+....++.|+
T Consensus 51 ~~~~~~~~~~~d~vih~A~~~~~~~~~---~~~~~~~~~n~~~~~~l~~a~~~~~--~~~v~~SS~~v~~~~~~~~~E~- 124 (315)
T 2ydy_A 51 AVHHIIHDFQPHVIVHCAAERRPDVVE---NQPDAASQLNVDASGNLAKEAAAVG--AFLIYISSDYVFDGTNPPYREE- 124 (315)
T ss_dssp -CHHHHHHHCCSEEEECC----------------------CHHHHHHHHHHHHHT--CEEEEEEEGGGSCSSSCSBCTT-
T ss_pred HHHHHHHhhCCCEEEECCcccChhhhh---cCHHHHHHHHHHHHHHHHHHHHHcC--CeEEEEchHHHcCCCCCCCCCC-
Confidence 999999865699999999975433222 2345678999999999999999987 3899999999998754456665
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
.+..+.+.|+.+|+++|.+++.+ +++++++||++||||...+. ..++
T Consensus 125 -------------~~~~~~~~Y~~sK~~~e~~~~~~----~~~~~~lR~~~v~G~~~~~~----------------~~~~ 171 (315)
T 2ydy_A 125 -------------DIPAPLNLYGKTKLDGEKAVLEN----NLGAAVLRIPILYGEVEKLE----------------ESAV 171 (315)
T ss_dssp -------------SCCCCCSHHHHHHHHHHHHHHHH----CTTCEEEEECSEECSCSSGG----------------GSTT
T ss_pred -------------CCCCCcCHHHHHHHHHHHHHHHh----CCCeEEEeeeeeeCCCCccc----------------ccHH
Confidence 24456789999999999988764 67889999999999986531 0123
Q ss_pred HHHHHHHh-cCCCeEEecCCCceeccccHHHHHHHHHHHHhCC---CCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcC
Q 011707 326 NRFCVQAA-VGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP---AQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 326 ~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~---~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g 400 (479)
..++..+. .+.++.+.+ .+.++|+|++|+|++++.+++++ ...++ +||+++ +.+|+.|+++.+.+. +|
T Consensus 172 ~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~a~~~~~~~~~~~~~~~~--~~~i~~~~~~s~~e~~~~i~~~---~g 244 (315)
T 2ydy_A 172 TVMFDKVQFSNKSANMDH--WQQRFPTHVKDVATVCRQLAEKRMLDPSIKG--TFHWSGNEQMTKYEMACAIADA---FN 244 (315)
T ss_dssp GGGHHHHHCCSSCEEEEC--SSBBCCEEHHHHHHHHHHHHHHHHTCTTCCE--EEECCCSCCBCHHHHHHHHHHH---TT
T ss_pred HHHHHHHHhcCCCeeecc--CceECcEEHHHHHHHHHHHHHhhccccCCCC--eEEEcCCCcccHHHHHHHHHHH---hC
Confidence 34455555 677766543 57789999999999999998763 23343 999998 679999999999998 77
Q ss_pred Ccce-eeecCC-CC-cccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHhc
Q 011707 401 LDVK-TISVPN-PR-VEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFK 453 (479)
Q Consensus 401 ~~~~-~~~~~~-~~-~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~~ 453 (479)
.+.+ +...+. +. .........+|++|++++||+|.++++++++++++|++..+
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~G~~p~~~~~~~l~~~~~~~~~~~ 300 (315)
T 2ydy_A 245 LPSSHLRPITDSPVLGAQRPRNAQLDCSKLETLGIGQRTPFRIGIKESLWPFLIDK 300 (315)
T ss_dssp CCCTTEEEECSCCCSSSCCCSBCCBCCHHHHHTTCCCCCCHHHHHHHHHGGGCC--
T ss_pred CChhheeccccccccccCCCcccccchHHHHhcCCCCCCCHHHHHHHHHHHHccch
Confidence 7654 333332 11 11122456789999988899999999999999998876543
|
| >2hrz_A AGR_C_4963P, nucleoside-diphosphate-sugar epimerase; agrobacterium tumefa structural genomics, PSI-2, protein structure initiative; 1.85A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-40 Score=323.01 Aligned_cols=306 Identities=12% Similarity=0.085 Sum_probs=237.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCC-------CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCcee
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKG-------YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIE 155 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G-------~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 155 (479)
.+++|+||||||+||||++|+++|+++| ++|++++|....... ....++.
T Consensus 11 ~~~~~~vlVtGa~G~iG~~l~~~L~~~g~~~~r~~~~V~~~~r~~~~~~~-----------------------~~~~~~~ 67 (342)
T 2hrz_A 11 YFQGMHIAIIGAAGMVGRKLTQRLVKDGSLGGKPVEKFTLIDVFQPEAPA-----------------------GFSGAVD 67 (342)
T ss_dssp CCSCEEEEEETTTSHHHHHHHHHHHHHCEETTEEEEEEEEEESSCCCCCT-----------------------TCCSEEE
T ss_pred CccCCEEEEECCCcHHHHHHHHHHHhcCCcccCCCceEEEEEccCCcccc-----------------------ccCCcee
Confidence 3578899999999999999999999999 899999986431100 0124788
Q ss_pred EEEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-----CcceEEEeec
Q 011707 156 LYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-----QECHLVKLGT 230 (479)
Q Consensus 156 ~v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-----~~~~~V~~SS 230 (479)
++.+|++|++++.++++. ++|+||||||.... ....++...+++|+.|+.+++++|++.+ ++ +|||+||
T Consensus 68 ~~~~Dl~d~~~~~~~~~~-~~d~vih~A~~~~~----~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~~~-~iv~~SS 141 (342)
T 2hrz_A 68 ARAADLSAPGEAEKLVEA-RPDVIFHLAAIVSG----EAELDFDKGYRINLDGTRYLFDAIRIANGKDGYKP-RVVFTSS 141 (342)
T ss_dssp EEECCTTSTTHHHHHHHT-CCSEEEECCCCCHH----HHHHCHHHHHHHHTHHHHHHHHHHHHHHHHHCCCC-EEEEEEE
T ss_pred EEEcCCCCHHHHHHHHhc-CCCEEEECCccCcc----cccccHHHHHHHHHHHHHHHHHHHHhcccccCCCc-EEEEeCc
Confidence 999999999999999853 79999999996431 1123456678999999999999998876 56 9999999
Q ss_pred cccccCCC-CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeec-CCCCchhhh
Q 011707 231 MGEYGTPN-IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYG-VRTDETAMH 308 (479)
Q Consensus 231 ~~v~g~~~-~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~G-p~~~~~~~~ 308 (479)
.++|+... .+++|+ .+..+.+.|+.+|+++|.+++.++++++++++++|++.||| |+..
T Consensus 142 ~~~~~~~~~~~~~E~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ir~~~v~g~pg~~----- 202 (342)
T 2hrz_A 142 IAVFGAPLPYPIPDE--------------FHTTPLTSYGTQKAICELLLSDYSRRGFFDGIGIRLPTICIRPGKP----- 202 (342)
T ss_dssp GGGCCSSCCSSBCTT--------------CCCCCSSHHHHHHHHHHHHHHHHHHTTSCEEEEEEECEETTCCSSC-----
T ss_pred hHhhCCCCCCCcCCC--------------CCCCCcchHHHHHHHHHHHHHHHHHhcCCCceeEEeeeEEecCCCC-----
Confidence 99998753 355554 34456889999999999999999888889999999999999 6532
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC---CCCceEEEeCCCCcCH
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ---PGEFRVFNQFTEQFSV 385 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~---~g~~~~~ni~~~~~s~ 385 (479)
.+....++..++.....++++.++.+++..++++|++|+|++++.+++.+.. .++ +||++++.+|+
T Consensus 203 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Dva~~~~~~~~~~~~~~~~~~--~~ni~g~~~s~ 271 (342)
T 2hrz_A 203 ---------NAAASGFFSNILREPLVGQEAVLPVPESIRHWHASPRSAVGFLIHGAMIDVEKVGPRR--NLSMPGLSATV 271 (342)
T ss_dssp ---------CCSGGGHHHHHHHHHHTTCCEEECSCTTCEEEEECHHHHHHHHHHHHHSCHHHHCSCC--EEECCCEEEEH
T ss_pred ---------cchhHHHHHHHHHHHhcCCCeeccCCCccceeeEehHHHHHHHHHHHhccccccCCcc--EEEcCCCCCCH
Confidence 1111345677788888888877766666778899999999999999987642 344 99997667999
Q ss_pred HHHHHHHHHHhhhcCCcc--eeeecCCCCc-cc-ccccccCCchHHHHcCCcccccHHHHHHHHHHHHH
Q 011707 386 NQLAALVTKAGEKLGLDV--KTISVPNPRV-EA-EEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAI 450 (479)
Q Consensus 386 ~el~~~i~~~~~~~g~~~--~~~~~~~~~~-~~-~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~ 450 (479)
.|+++.+.+. +|.+. .+...+.+.. .. ......+|++|+++|||+|+++++++++++++|+.
T Consensus 272 ~e~~~~i~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~l~e~l~~~~~~~~ 337 (342)
T 2hrz_A 272 GEQIEALRKV---AGEKAVALIRREPNEMIMRMCEGWAPGFEAKRARELGFTAESSFEEIIQVHIEDEL 337 (342)
T ss_dssp HHHHHHHHHH---HCHHHHTTEEECCCHHHHHHHTTSCCCBCCHHHHHTTCCCCSSHHHHHHHHHHHHS
T ss_pred HHHHHHHHHH---cCcccccceeeccCcchhhhhcccccccChHHHHHcCCCCCCCHHHHHHHHHHHhc
Confidence 9999999998 66554 2333332211 00 11122579999988999999999999999999875
|
| >1z45_A GAL10 bifunctional protein; epimerase, mutarotase, metabolism, isomerase; HET: GAL NAD GUD; 1.85A {Saccharomyces cerevisiae} SCOP: b.30.5.4 c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-39 Score=347.23 Aligned_cols=332 Identities=23% Similarity=0.295 Sum_probs=240.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+||||++|+++|+++|++|++++|...... +..+.+..+...++.++.+|++
T Consensus 8 ~~~~~~ilVTGatG~IG~~l~~~L~~~G~~V~~~~r~~~~~~----------------~~~~~l~~~~~~~v~~v~~Dl~ 71 (699)
T 1z45_A 8 ESTSKIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTY----------------DSVARLEVLTKHHIPFYEVDLC 71 (699)
T ss_dssp ---CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCT----------------HHHHHHHHHHTSCCCEEECCTT
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCcchH----------------HHHHHHhhccCCceEEEEcCCC
Confidence 346789999999999999999999999999999998643210 0111111112357889999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCC----
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN---- 238 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~---- 238 (479)
|++++.++++..++|+|||+||.........+ ....+++|+.|+.+++++|++.+++ +|||+||.++||...
T Consensus 72 d~~~l~~~~~~~~~D~Vih~A~~~~~~~~~~~---~~~~~~~Nv~gt~~ll~a~~~~~~~-~iV~~SS~~vyg~~~~~~~ 147 (699)
T 1z45_A 72 DRKGLEKVFKEYKIDSVIHFAGLKAVGESTQI---PLRYYHNNILGTVVLLELMQQYNVS-KFVFSSSATVYGDATRFPN 147 (699)
T ss_dssp CHHHHHHHHHHSCCCEEEECCSCCCHHHHHHS---HHHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCCGGGSTT
T ss_pred CHHHHHHHHHhCCCCEEEECCcccCcCccccC---HHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECcHHHhCCCccccc
Confidence 99999999986679999999997543322222 2456899999999999999998887 999999999998642
Q ss_pred -CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH--hCCceEEeecCeeecCCCCchhhhHhhhccc
Q 011707 239 -IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA--WGIRATDLNQGVVYGVRTDETAMHEELCNRL 315 (479)
Q Consensus 239 -~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~--~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~ 315 (479)
.++.|+ .+..+.+.|+.+|+++|.+++.++++ .+++++++||++||||+...- ...
T Consensus 148 ~~~~~E~--------------~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~g~~~~ilR~~~vyG~~~~~~-------~g~ 206 (699)
T 1z45_A 148 MIPIPEE--------------CPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGL-------IGE 206 (699)
T ss_dssp CCSBCTT--------------SCCCCCSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSS-------CCC
T ss_pred cCCcccc--------------CCCCCCChHHHHHHHHHHHHHHHHHhccCCCcEEEEEeccccCCCcccc-------ccc
Confidence 133333 24456789999999999999998887 699999999999999863210 000
Q ss_pred CCCCcccchHHHHHHHHhcC--CCeEEec------CCCceeccccHHHHHHHHHHHHhCCC----CCCCceEEEeCC-CC
Q 011707 316 DYDGVFGTALNRFCVQAAVG--HPLTVYG------KGGQTRGYLDIRDTVQCVELAIANPA----QPGEFRVFNQFT-EQ 382 (479)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~--~~~~~~~------~~~~~~~~v~v~Dva~a~~~~~~~~~----~~g~~~~~ni~~-~~ 382 (479)
+..+....++. ++.++..+ .++.+++ ++.+.++||||+|+|++++.+++... ..+..++|||++ +.
T Consensus 207 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~i~v~Dva~a~~~a~~~~~~~~~~~~~~~~yni~~~~~ 285 (699)
T 1z45_A 207 DPLGIPNNLLP-YMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKG 285 (699)
T ss_dssp CCSSSCCSHHH-HHHHHHTTSSSCCCCC------CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCC
T ss_pred ccccchhHHHH-HHHHHHhcCCCceEEeCCcccCCCCCeeEeeEEHHHHHHHHHHHHhhhhccccccCCceEEEECCCCC
Confidence 00111122344 34444433 4666665 67889999999999999999987421 122234999998 67
Q ss_pred cCHHHHHHHHHHHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcccCCcCCC
Q 011707 383 FSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDRVDSKQI 461 (479)
Q Consensus 383 ~s~~el~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 461 (479)
+|+.|+++.+.+. +|.++++...+... .....+.+|++|+++ |||+|+++++++++++++|++....+++.+..
T Consensus 286 ~s~~el~~~i~~~---~g~~~~~~~~~~~~--~~~~~~~~d~~ka~~~LG~~p~~~l~egl~~~~~w~~~~~~~~~~~~~ 360 (699)
T 1z45_A 286 STVFEVYHAFCKA---SGIDLPYKVTGRRA--GDVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFGYQLRGV 360 (699)
T ss_dssp EEHHHHHHHHHHH---HTCCCCC-----------CCCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTTCSCCTTE
T ss_pred CcHHHHHHHHHHH---hCCCCCceecCCCC--CccccccCCHHHHHHhcCCCCCCCHHHHHHHHHHHHHhCCcchhhhhe
Confidence 9999999999998 77776655444322 223456789999986 99999999999999999999987777776543
|
| >1vl0_A DTDP-4-dehydrorhamnose reductase, RFBD ortholog; structural joint center for structural genomics, JCSG, protein structu initiative; HET: NAI UNL; 2.05A {Clostridium acetobutylicum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-39 Score=311.26 Aligned_cols=275 Identities=16% Similarity=0.132 Sum_probs=222.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
..++|||||||||||++|+++|+++|++|++++|. .+|++|.
T Consensus 11 ~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~--------------------------------------~~Dl~d~ 52 (292)
T 1vl0_A 11 HHMKILITGANGQLGREIQKQLKGKNVEVIPTDVQ--------------------------------------DLDITNV 52 (292)
T ss_dssp -CEEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT--------------------------------------TCCTTCH
T ss_pred ccceEEEECCCChHHHHHHHHHHhCCCeEEeccCc--------------------------------------cCCCCCH
Confidence 35799999999999999999999999999998762 3799999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcC
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEE 243 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e 243 (479)
+++.++++..++|+||||||........ .++...+++|+.|+.+++++|++.++ +|||+||.++|+.... ++.|
T Consensus 53 ~~~~~~~~~~~~d~vih~A~~~~~~~~~---~~~~~~~~~nv~~~~~l~~a~~~~~~--~iv~~SS~~v~~~~~~~~~~E 127 (292)
T 1vl0_A 53 LAVNKFFNEKKPNVVINCAAHTAVDKCE---EQYDLAYKINAIGPKNLAAAAYSVGA--EIVQISTDYVFDGEAKEPITE 127 (292)
T ss_dssp HHHHHHHHHHCCSEEEECCCCCCHHHHH---HCHHHHHHHHTHHHHHHHHHHHHHTC--EEEEEEEGGGSCSCCSSCBCT
T ss_pred HHHHHHHHhcCCCEEEECCccCCHHHHh---cCHHHHHHHHHHHHHHHHHHHHHcCC--eEEEechHHeECCCCCCCCCC
Confidence 9999999866799999999975432222 23456789999999999999999873 9999999999987643 5555
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
+ .+..+.+.|+.+|+++|.+++.+ +.+++++||++|||| .. .
T Consensus 128 ~--------------~~~~~~~~Y~~sK~~~E~~~~~~----~~~~~~lR~~~v~G~-~~-------------------~ 169 (292)
T 1vl0_A 128 F--------------DEVNPQSAYGKTKLEGENFVKAL----NPKYYIVRTAWLYGD-GN-------------------N 169 (292)
T ss_dssp T--------------SCCCCCSHHHHHHHHHHHHHHHH----CSSEEEEEECSEESS-SS-------------------C
T ss_pred C--------------CCCCCccHHHHHHHHHHHHHHhh----CCCeEEEeeeeeeCC-Cc-------------------C
Confidence 4 24456789999999999988765 457999999999999 32 2
Q ss_pred hHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCc
Q 011707 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLD 402 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~ 402 (479)
++..++..+..+.++.+++ ++.++|+|++|+|++++.+++++ .++ +||+++ +.+|+.|+++.+.+. +|.+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~--~~~~~~i~v~Dva~~~~~~~~~~--~~~--~~~i~~~~~~s~~e~~~~i~~~---~g~~ 240 (292)
T 1vl0_A 170 FVKTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDEK--NYG--TFHCTCKGICSWYDFAVEIFRL---TGID 240 (292)
T ss_dssp HHHHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHHT--CCE--EEECCCBSCEEHHHHHHHHHHH---HCCC
T ss_pred hHHHHHHHHhcCCcEEeec--CeeeCCccHHHHHHHHHHHHhcC--CCc--EEEecCCCCccHHHHHHHHHHH---hCCC
Confidence 3556667777787777765 47789999999999999999875 344 999998 679999999999998 8877
Q ss_pred ceeeecCCCC---cccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHH
Q 011707 403 VKTISVPNPR---VEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAI 450 (479)
Q Consensus 403 ~~~~~~~~~~---~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~ 450 (479)
.++...+... .......+.+|++|+++ |||+|+ +++++++++++|++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~-~~~~~l~~~~~~~~ 291 (292)
T 1vl0_A 241 VKVTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKESLKEYIDLLQ 291 (292)
T ss_dssp CEEEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHT
T ss_pred CceeeccccccCcccCCCccccccHHHHHHHcCCCCC-CHHHHHHHHHHHhc
Confidence 6665554321 11223456799999988 999999 99999999999874
|
| >1n2s_A DTDP-4-, DTDP-glucose oxidoreductase; rossman-fold, sugar-nucleotide-binding domain; HET: NAD; 2.00A {Salmonella enterica subsp} SCOP: c.2.1.2 PDB: 1kc1_A* 1kc3_A* 1kbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=315.43 Aligned_cols=280 Identities=14% Similarity=0.145 Sum_probs=221.3
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||||||||++|+++|+ +|++|++++|.. ..+.+|++|.++
T Consensus 1 m~ilVtGatG~iG~~l~~~L~-~g~~V~~~~r~~----------------------------------~~~~~D~~d~~~ 45 (299)
T 1n2s_A 1 MNILLFGKTGQVGWELQRSLA-PVGNLIALDVHS----------------------------------KEFCGDFSNPKG 45 (299)
T ss_dssp CEEEEECTTSHHHHHHHHHTT-TTSEEEEECTTC----------------------------------SSSCCCTTCHHH
T ss_pred CeEEEECCCCHHHHHHHHHhh-cCCeEEEecccc----------------------------------ccccccCCCHHH
Confidence 589999999999999999999 899999998742 134789999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGY 245 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~ 245 (479)
+.++++..++|+|||+||......... ++...+++|+.|+.+++++|++.++ +|||+||.++||.... ++.|+
T Consensus 46 ~~~~~~~~~~d~vih~a~~~~~~~~~~---~~~~~~~~n~~~~~~l~~a~~~~~~--~~v~~SS~~vy~~~~~~~~~E~- 119 (299)
T 1n2s_A 46 VAETVRKLRPDVIVNAAAHTAVDKAES---EPELAQLLNATSVEAIAKAANETGA--WVVHYSTDYVFPGTGDIPWQET- 119 (299)
T ss_dssp HHHHHHHHCCSEEEECCCCCCHHHHTT---CHHHHHHHHTHHHHHHHHHHTTTTC--EEEEEEEGGGSCCCTTCCBCTT-
T ss_pred HHHHHHhcCCCEEEECcccCCHhhhhc---CHHHHHHHHHHHHHHHHHHHHHcCC--cEEEEecccEEeCCCCCCCCCC-
Confidence 999998556999999999754322222 3456789999999999999998873 8999999999997654 55554
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
.+..|.+.|+.+|+++|++++.++ .+++++||+++|||+.. .++
T Consensus 120 -------------~~~~p~~~Y~~sK~~~E~~~~~~~----~~~~ilRp~~v~G~~~~-------------------~~~ 163 (299)
T 1n2s_A 120 -------------DATSPLNVYGKTKLAGEKALQDNC----PKHLIFRTSWVYAGKGN-------------------NFA 163 (299)
T ss_dssp -------------SCCCCSSHHHHHHHHHHHHHHHHC----SSEEEEEECSEECSSSC-------------------CHH
T ss_pred -------------CCCCCccHHHHHHHHHHHHHHHhC----CCeEEEeeeeecCCCcC-------------------cHH
Confidence 345668899999999999887653 48999999999999742 245
Q ss_pred HHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC--C-CCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCC
Q 011707 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA--Q-PGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~-~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~ 401 (479)
..++..+..+.++.++++ +.++|+|++|+|++++.+++++. . .++ +||+++ +.+|+.|+++.+.+. +|.
T Consensus 164 ~~~~~~~~~~~~~~~~~~--~~~~~i~v~Dva~~~~~~~~~~~~~~~~~~--~~~i~~~~~~s~~e~~~~i~~~---~g~ 236 (299)
T 1n2s_A 164 KTMLRLAKERQTLSVIND--QYGAPTGAELLADCTAHAIRVALNKPEVAG--LYHLVAGGTTTWHDYAALVFDE---ARK 236 (299)
T ss_dssp HHHHHHHHHCSEEEEECS--CEECCEEHHHHHHHHHHHHHHHHHCGGGCE--EEECCCBSCEEHHHHHHHHHHH---HHH
T ss_pred HHHHHHHhcCCCEEeecC--cccCCeeHHHHHHHHHHHHHHhccccccCc--eEEEeCCCCCCHHHHHHHHHHH---hCC
Confidence 667777788888777754 78999999999999999998752 2 244 999999 679999999999998 444
Q ss_pred c------ceeeecCCC---CcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHH
Q 011707 402 D------VKTISVPNP---RVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 402 ~------~~~~~~~~~---~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
+ +.+...+.. ........+.+|++|+++ |||+|+ +++++++++++|++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~-~~~~~l~~~~~~~~~ 295 (299)
T 1n2s_A 237 AGITLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILP-QWELGVKRMLTEMFT 295 (299)
T ss_dssp HTCCCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCC-BHHHHHHHHHHHHHS
T ss_pred CccccccccccccccccccCcCCCCCceeeeHHHHHHhcCCCCC-CHHHHHHHHHHHHHh
Confidence 3 233333321 111223456799999987 999998 899999999998864
|
| >1z7e_A Protein aRNA; rossmann fold, OB-like fold, hydrolase; HET: ATP UGA; 3.00A {Escherichia coli} SCOP: b.46.1.1 c.2.1.2 c.65.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=339.74 Aligned_cols=321 Identities=19% Similarity=0.197 Sum_probs=240.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+++|+|||||||||||++|+++|+++ |++|++++|...... .+ ....++.++.+|++
T Consensus 313 ~~~~~VLVTGatG~IG~~l~~~Ll~~~g~~V~~~~r~~~~~~--------------------~~--~~~~~v~~v~~Dl~ 370 (660)
T 1z7e_A 313 RRRTRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAIS--------------------RF--LNHPHFHFVEGDIS 370 (660)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHHHSSSEEEEEEESCCTTTG--------------------GG--TTCTTEEEEECCTT
T ss_pred ccCceEEEEcCCcHHHHHHHHHHHhcCCCEEEEEEcCchhhh--------------------hh--ccCCceEEEECCCC
Confidence 46789999999999999999999998 899999998643210 00 01247899999999
Q ss_pred ChHH-HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-C
Q 011707 163 DFEF-LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-D 240 (479)
Q Consensus 163 d~~~-~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~ 240 (479)
|.++ ++++++ ++|+|||+||.........+ +...+++|+.|+.+++++|++.+ + +|||+||.++||.... +
T Consensus 371 d~~~~~~~~~~--~~D~Vih~Aa~~~~~~~~~~---~~~~~~~Nv~gt~~ll~aa~~~~-~-r~V~~SS~~vyg~~~~~~ 443 (660)
T 1z7e_A 371 IHSEWIEYHVK--KCDVVLPLVAIATPIEYTRN---PLRVFELDFEENLRIIRYCVKYR-K-RIIFPSTSEVYGMCSDKY 443 (660)
T ss_dssp TCHHHHHHHHH--HCSEEEECCCCCCTHHHHHS---HHHHHHHHTHHHHHHHHHHHHTT-C-EEEEECCGGGGBTCCSSS
T ss_pred CcHHHHHHhhc--CCCEEEECceecCccccccC---HHHHHHhhhHHHHHHHHHHHHhC-C-EEEEEecHHHcCCCCCcc
Confidence 9765 778887 79999999997653322222 35678999999999999999988 5 9999999999987643 4
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCc
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~ 320 (479)
+.|+...... . ....+.+.|+.+|+++|.+++.+++++|++++++||++||||+.++... . .. +
T Consensus 444 ~~E~~~~~~~------~-p~~~p~~~Y~~sK~~~E~~~~~~~~~~gi~~~ilRpg~v~Gp~~~~~~~--~---~~---~- 507 (660)
T 1z7e_A 444 FDEDHSNLIV------G-PVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNLNA--A---RI---G- 507 (660)
T ss_dssp BCTTTCCEEE------C-CTTCTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEESTTSSCHHH--H---TT---T-
T ss_pred cCCCcccccc------C-cccCCCCCcHHHHHHHHHHHHHHHHHcCCCEEEECCCcccCCCcccccc--c---cc---c-
Confidence 5554211000 0 0124567899999999999999988889999999999999998642100 0 00 0
Q ss_pred ccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC--CCCCceEEEeCC-C-CcCHHHHHHHHHHHh
Q 011707 321 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA--QPGEFRVFNQFT-E-QFSVNQLAALVTKAG 396 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~g~~~~~ni~~-~-~~s~~el~~~i~~~~ 396 (479)
...++..++.++..+.++.+++++++.++|+|++|+|++++.+++++. ..+ ++||+++ + .+|+.|+++.+.+.
T Consensus 508 ~~~~~~~~~~~~~~g~~~~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~~~g--~~~ni~~~~~~~s~~el~~~i~~~- 584 (660)
T 1z7e_A 508 SSRAITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDG--EIINIGNPENEASIEELGEMLLAS- 584 (660)
T ss_dssp CSCHHHHHHHHHHHTCCEEEEGGGCCEEECEEHHHHHHHHHHHHHCGGGTTTT--EEEEECCGGGEEEHHHHHHHHHHH-
T ss_pred ccchHHHHHHHHHcCCCcEEeCCCCeEEEEEEHHHHHHHHHHHHhCccccCCC--eEEEECCCCCCcCHHHHHHHHHHH-
Confidence 023466788888889998888888899999999999999999998764 234 4999998 4 69999999999998
Q ss_pred hhcCCcceeeecCCCC-------------cccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 397 EKLGLDVKTISVPNPR-------------VEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 397 ~~~g~~~~~~~~~~~~-------------~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
+|.+......+... .........+|++|+++ |||+|+++++++++++++|++...+
T Consensus 585 --~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ka~~~LG~~p~~~l~egl~~~i~~~~~~~~ 654 (660)
T 1z7e_A 585 --FEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVD 654 (660)
T ss_dssp --HHHCTTGGGSCCCCCEEEECTHHHHCTTCCCCSCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHTTSC
T ss_pred --hcCCCcccccCccccccchhccccccccccchhhcccCHHHHHHhcCCCccCcHHHHHHHHHHHHHhhcc
Confidence 44322111111110 00122345689999987 9999999999999999999876543
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-38 Score=312.94 Aligned_cols=318 Identities=14% Similarity=0.085 Sum_probs=229.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEE-Eccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELY-IGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v-~~Dl 161 (479)
.+++|+||||||+||||++|+++|+++|++|++++|...... .....+....+.+++++ .+|+
T Consensus 8 ~~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~----------------~~~~~~~~~~~~~~~~~~~~D~ 71 (342)
T 1y1p_A 8 LPEGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLA----------------NLQKRWDAKYPGRFETAVVEDM 71 (342)
T ss_dssp SCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHH----------------HHHHHHHHHSTTTEEEEECSCT
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCcccHH----------------HHHHHhhccCCCceEEEEecCC
Confidence 356889999999999999999999999999999998543210 00111111112468888 8999
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHH-cCCcceEEEeeccccccCCC--
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKE-FRQECHLVKLGTMGEYGTPN-- 238 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~-~g~~~~~V~~SS~~v~g~~~-- 238 (479)
+|.+++.++++ ++|+||||||..... .++..++++|+.|+.+++++|.+ .+++ +|||+||.++|+...
T Consensus 72 ~d~~~~~~~~~--~~d~vih~A~~~~~~------~~~~~~~~~n~~g~~~ll~~~~~~~~~~-~iv~~SS~~~~~~~~~~ 142 (342)
T 1y1p_A 72 LKQGAYDEVIK--GAAGVAHIASVVSFS------NKYDEVVTPAIGGTLNALRAAAATPSVK-RFVLTSSTVSALIPKPN 142 (342)
T ss_dssp TSTTTTTTTTT--TCSEEEECCCCCSCC------SCHHHHHHHHHHHHHHHHHHHHTCTTCC-EEEEECCGGGTCCCCTT
T ss_pred cChHHHHHHHc--CCCEEEEeCCCCCCC------CCHHHHHHHHHHHHHHHHHHHHhCCCCc-EEEEeccHHHhcCCCCC
Confidence 99999999988 899999999975432 12356789999999999999985 5666 999999999986432
Q ss_pred ---CCCcCCceeecCCC--CCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCCCCchhhhHhh
Q 011707 239 ---IDIEEGYITINHNG--RTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 239 ---~~~~e~~~~~~~~~--~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
.+++|+.+...... .......+..+.+.|+.+|+++|.+++.+++++ +++++++||++||||...+..
T Consensus 143 ~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~e~~~~~~~~~~~~~~~~~~~rp~~v~g~~~~~~~----- 217 (342)
T 1y1p_A 143 VEGIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPET----- 217 (342)
T ss_dssp CCCCEECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTT-----
T ss_pred CCCcccCccccCchhhhhhccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCceECCCCCCCC-----
Confidence 24445432100000 000000123456899999999999999999886 789999999999999865321
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHH
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAAL 391 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~ 391 (479)
. +..+..++..+..++++.+++++ +.++|+|++|+|++++.+++++...|+ .+.+.++.+|+.|+++.
T Consensus 218 ------~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~v~Dva~a~~~~~~~~~~~g~--~~~~~g~~~s~~e~~~~ 285 (342)
T 1y1p_A 218 ------Q---SGSTSGWMMSLFNGEVSPALALM-PPQYYVSAVDIGLLHLGCLVLPQIERR--RVYGTAGTFDWNTVLAT 285 (342)
T ss_dssp ------C---CCHHHHHHHHHHTTCCCHHHHTC-CSEEEEEHHHHHHHHHHHHHCTTCCSC--EEEECCEEECHHHHHHH
T ss_pred ------C---CccHHHHHHHHHcCCCccccccC-CcCCEeEHHHHHHHHHHHHcCcccCCc--eEEEeCCCCCHHHHHHH
Confidence 0 12567788888888887666665 678999999999999999987654454 44444467999999999
Q ss_pred HHHHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCC---cccccHHHHHHHHHHHH
Q 011707 392 VTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGL---QPHILSDSLLDSLLNFA 449 (479)
Q Consensus 392 i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~---~p~~~~~~~~~~~~~~~ 449 (479)
+.+. +|.. .+. .+.+.. ......+|++|+++ ||| .+.++++++++++++|+
T Consensus 286 i~~~---~~~~-~~~-~~~~~~--~~~~~~~d~~k~~~~lg~~~~~~~~~l~~~l~~~~~~~ 340 (342)
T 1y1p_A 286 FRKL---YPSK-TFP-ADFPDQ--GQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVGSE 340 (342)
T ss_dssp HHHH---CTTS-CCC-CCCCCC--CCCCCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHCCS
T ss_pred HHHH---CCCc-cCC-CCCCcc--ccccccCChHHHHHHHhhcccCCcCCHHHHHHHHHHHh
Confidence 9998 6653 111 111111 11235679999987 887 56679999999998875
|
| >2c29_D Dihydroflavonol 4-reductase; flavonoids, short dehydrogenase reductase, NADPH, dihydroquercetin, rossmann fold, oxidoreductase; HET: NAP DQH; 1.81A {Vitis vinifera} PDB: 2iod_A* 2nnl_D* 3bxx_A* 3c1t_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-38 Score=309.06 Aligned_cols=312 Identities=14% Similarity=0.138 Sum_probs=213.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccC--CCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT--GKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~ 162 (479)
++|+||||||+||||++|+++|+++|++|++++|..... .....+..+. ..+++++.+|++
T Consensus 4 ~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~r~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~Dl~ 66 (337)
T 2c29_D 4 QSETVCVTGASGFIGSWLVMRLLERGYTVRATVRDPTNV-----------------KKVKHLLDLPKAETHLTLWKADLA 66 (337)
T ss_dssp --CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCTTCH-----------------HHHHHHHTSTTHHHHEEEEECCTT
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEEECCcchh-----------------HHHHHHHhcccCCCeEEEEEcCCC
Confidence 578999999999999999999999999999988753210 0000110111 125888999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccc-cccCCCC-
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMG-EYGTPNI- 239 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~-v~g~~~~- 239 (479)
|.+++.++++ ++|+|||+|+.... ...++ ...++++|+.|+.+++++|++.+ ++ +|||+||.+ +|+....
T Consensus 67 d~~~~~~~~~--~~d~Vih~A~~~~~--~~~~~--~~~~~~~nv~gt~~ll~a~~~~~~~~-riV~~SS~~~~~~~~~~~ 139 (337)
T 2c29_D 67 DEGSFDEAIK--GCTGVFHVATPMDF--ESKDP--ENEVIKPTIEGMLGIMKSCAAAKTVR-RLVFTSSAGTVNIQEHQL 139 (337)
T ss_dssp STTTTHHHHT--TCSEEEECCCCCCS--SCSSH--HHHTHHHHHHHHHHHHHHHHHHSCCC-EEEEECCGGGTSCSSSCC
T ss_pred CHHHHHHHHc--CCCEEEEeccccCC--CCCCh--HHHHHHHHHHHHHHHHHHHHhCCCcc-EEEEeeeHhhcccCCCCC
Confidence 9999999998 89999999986421 11121 13478999999999999999987 66 999999976 5554321
Q ss_pred -CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCC
Q 011707 240 -DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318 (479)
Q Consensus 240 -~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~ 318 (479)
+..|+.+.... .......+.+.|+.||+++|.+++.+++++|++++++||++||||+..+..
T Consensus 140 ~~~~E~~~~~~~-----~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~------------ 202 (337)
T 2c29_D 140 PVYDESCWSDME-----FCRAKKMTAWMYFVSKTLAEQAAWKYAKENNIDFITIIPTLVVGPFIMSSM------------ 202 (337)
T ss_dssp SEECTTCCCCHH-----HHHHHCCTTHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECEEESCCSCSSC------------
T ss_pred cccCcccCCchh-----hhcccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCC------------
Confidence 23333110000 000000135679999999999999988888999999999999999754310
Q ss_pred CcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhhh
Q 011707 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEK 398 (479)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~~ 398 (479)
...+...+ ....|... .++.+. ...|+|++|+|++++.+++++...+ .|+++++.+|+.|+++.+.+.
T Consensus 203 ---~~~~~~~~-~~~~g~~~-~~~~~~-~~~~i~v~Dva~a~~~~~~~~~~~~---~~~~~~~~~s~~e~~~~i~~~--- 270 (337)
T 2c29_D 203 ---PPSLITAL-SPITGNEA-HYSIIR-QGQFVHLDDLCNAHIYLFENPKAEG---RYICSSHDCIILDLAKMLREK--- 270 (337)
T ss_dssp ---CHHHHHHT-HHHHTCGG-GHHHHT-EEEEEEHHHHHHHHHHHHHCTTCCE---EEEECCEEEEHHHHHHHHHHH---
T ss_pred ---CchHHHHH-HHHcCCCc-cccccC-CCCEEEHHHHHHHHHHHhcCcccCc---eEEEeCCCCCHHHHHHHHHHH---
Confidence 11111111 11334332 222212 2459999999999999998754332 688877679999999999997
Q ss_pred cC-CcceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHh
Q 011707 399 LG-LDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 399 ~g-~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~ 452 (479)
++ ..++....+. ......+.+|++|+++|||+|+++++++++++++|++..
T Consensus 271 ~~~~~~~~~~~~~---~~~~~~~~~d~~k~~~lG~~p~~~l~e~l~~~~~~~~~~ 322 (337)
T 2c29_D 271 YPEYNIPTEFKGV---DENLKSVCFSSKKLTDLGFEFKYSLEDMFTGAVDTCRAK 322 (337)
T ss_dssp CTTSCCCSCCTTC---CTTCCCCEECCHHHHHHTCCCCCCHHHHHHHHHHHHHHT
T ss_pred CCCccCCCCCCcc---cCCCccccccHHHHHHcCCCcCCCHHHHHHHHHHHHHHc
Confidence 42 2222211111 112234568999996699999999999999999999763
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=300.20 Aligned_cols=266 Identities=14% Similarity=0.121 Sum_probs=208.1
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+|||||| ||||++|+++|+++|++|++++|..... ..+ ...+++++.+|++|.+
T Consensus 5 ~~~ilVtGa-G~iG~~l~~~L~~~g~~V~~~~r~~~~~--------------------~~~---~~~~~~~~~~D~~d~~ 60 (286)
T 3ius_A 5 TGTLLSFGH-GYTARVLSRALAPQGWRIIGTSRNPDQM--------------------EAI---RASGAEPLLWPGEEPS 60 (286)
T ss_dssp CCEEEEETC-CHHHHHHHHHHGGGTCEEEEEESCGGGH--------------------HHH---HHTTEEEEESSSSCCC
T ss_pred cCcEEEECC-cHHHHHHHHHHHHCCCEEEEEEcChhhh--------------------hhH---hhCCCeEEEecccccc
Confidence 579999998 9999999999999999999999864321 011 1147899999999954
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHH--cCCcceEEEeeccccccCCCC-CCc
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKE--FRQECHLVKLGTMGEYGTPNI-DIE 242 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~--~g~~~~~V~~SS~~v~g~~~~-~~~ 242 (479)
+. ++|+|||+|+..... ...+.++++++++ .+++ +|||+||.++||.... ++.
T Consensus 61 -----~~--~~d~vi~~a~~~~~~----------------~~~~~~l~~a~~~~~~~~~-~~v~~Ss~~vyg~~~~~~~~ 116 (286)
T 3ius_A 61 -----LD--GVTHLLISTAPDSGG----------------DPVLAALGDQIAARAAQFR-WVGYLSTTAVYGDHDGAWVD 116 (286)
T ss_dssp -----CT--TCCEEEECCCCBTTB----------------CHHHHHHHHHHHHTGGGCS-EEEEEEEGGGGCCCTTCEEC
T ss_pred -----cC--CCCEEEECCCccccc----------------cHHHHHHHHHHHhhcCCce-EEEEeecceecCCCCCCCcC
Confidence 55 899999999864311 1235789999988 6777 9999999999998754 555
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|+ .+..|.+.|+.+|+++|++++.+ .+++++++||+++|||+...
T Consensus 117 E~--------------~~~~p~~~Y~~sK~~~E~~~~~~---~~~~~~ilRp~~v~G~~~~~------------------ 161 (286)
T 3ius_A 117 ET--------------TPLTPTAARGRWRVMAEQQWQAV---PNLPLHVFRLAGIYGPGRGP------------------ 161 (286)
T ss_dssp TT--------------SCCCCCSHHHHHHHHHHHHHHHS---TTCCEEEEEECEEEBTTBSS------------------
T ss_pred CC--------------CCCCCCCHHHHHHHHHHHHHHhh---cCCCEEEEeccceECCCchH------------------
Confidence 55 35567899999999999998876 59999999999999997532
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCC
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~ 401 (479)
+..+..+..+.+.++ .+.++|+|++|+|++++.+++++. .++ +||+++ +.+|+.|+++.+.+. +|.
T Consensus 162 ------~~~~~~~~~~~~~~~-~~~~~~i~v~Dva~a~~~~~~~~~-~g~--~~~i~~~~~~s~~e~~~~i~~~---~g~ 228 (286)
T 3ius_A 162 ------FSKLGKGGIRRIIKP-GQVFSRIHVEDIAQVLAASMARPD-PGA--VYNVCDDEPVPPQDVIAYAAEL---QGL 228 (286)
T ss_dssp ------STTSSSSCCCEEECT-TCCBCEEEHHHHHHHHHHHHHSCC-TTC--EEEECCSCCBCHHHHHHHHHHH---HTC
T ss_pred ------HHHHhcCCccccCCC-CcccceEEHHHHHHHHHHHHhCCC-CCC--EEEEeCCCCccHHHHHHHHHHH---cCC
Confidence 223456777777665 578899999999999999999876 454 999998 679999999999998 777
Q ss_pred cceeeec--CCCCccc----ccccccCCchHHHH-cCCcccc-cHHHHHHHHHH
Q 011707 402 DVKTISV--PNPRVEA----EEHYYNAKHTKLIE-LGLQPHI-LSDSLLDSLLN 447 (479)
Q Consensus 402 ~~~~~~~--~~~~~~~----~~~~~~~d~~k~~~-lG~~p~~-~~~~~~~~~~~ 447 (479)
+.+.... +...... ......+|++|+++ |||+|++ +++++++++++
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~p~~~e~l~~~~~ 282 (286)
T 3ius_A 229 PLPPAVDFDKADLTPMARSFYSENKRVRNDRIKEELGVRLKYPNYRVGLEALQA 282 (286)
T ss_dssp CCCCEEEGGGSCCCHHHHHTTSCCCEECCHHHHHTTCCCCSCSSHHHHHHHHHH
T ss_pred CCCcccchhhhccChhHHHhhcCCceeehHHHHHHhCCCCCcCCHHHHHHHHHH
Confidence 6543221 1111111 12455689999988 9999999 79999999876
|
| >2rh8_A Anthocyanidin reductase; flavonoids, rossmann fold, short chain dehydrogenase/reductase, oxidoreductase; 2.22A {Vitis vinifera} PDB: 3hfs_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-38 Score=310.51 Aligned_cols=310 Identities=13% Similarity=0.101 Sum_probs=210.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+||||||+||||++|+++|+++|++|++++|....... . ..+..+. ...++.++.+|++|++
T Consensus 9 ~~~vlVTGatGfIG~~l~~~Ll~~G~~V~~~~r~~~~~~~-------------~-~~~~~~~--~~~~~~~~~~Dl~d~~ 72 (338)
T 2rh8_A 9 KKTACVVGGTGFVASLLVKLLLQKGYAVNTTVRDPDNQKK-------------V-SHLLELQ--ELGDLKIFRADLTDEL 72 (338)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHTTCEEEEEESCTTCTTT-------------T-HHHHHHG--GGSCEEEEECCTTTSS
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCCEEEEEEcCcchhhh-------------H-HHHHhcC--CCCcEEEEecCCCChH
Confidence 6899999999999999999999999999998874321000 0 0000111 1246889999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccc-cccCCC----C
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMG-EYGTPN----I 239 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~-v~g~~~----~ 239 (479)
++.++++ ++|+|||+||.... ...++ ...++++|+.|+.+++++|++.+ ++ +|||+||.+ +|+.+. .
T Consensus 73 ~~~~~~~--~~D~Vih~A~~~~~--~~~~~--~~~~~~~nv~gt~~ll~aa~~~~~v~-r~V~~SS~~~~~~~~~~~~~~ 145 (338)
T 2rh8_A 73 SFEAPIA--GCDFVFHVATPVHF--ASEDP--ENDMIKPAIQGVVNVMKACTRAKSVK-RVILTSSAAAVTINQLDGTGL 145 (338)
T ss_dssp SSHHHHT--TCSEEEEESSCCCC-------------CHHHHHHHHHHHHHHHHCTTCC-EEEEECCHHHHHHHHHTCSCC
T ss_pred HHHHHHc--CCCEEEEeCCccCC--CCCCc--HHHHHHHHHHHHHHHHHHHHHcCCcC-EEEEEecHHHeecCCcCCCCc
Confidence 9999998 89999999986432 11122 12367899999999999999986 76 999999976 454321 1
Q ss_pred CCcCCceeecCCCCCCCCCCCCCC-CchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCC
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQA-SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~ 318 (479)
+++|+.+... ....+..+ ...|+.||.++|.+++.+++++|++++++||++||||+..+..
T Consensus 146 ~~~E~~~~~~------~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~~lrp~~v~Gp~~~~~~------------ 207 (338)
T 2rh8_A 146 VVDEKNWTDI------EFLTSAKPPTWGYPASKTLAEKAAWKFAEENNIDLITVIPTLMAGSSLTSDV------------ 207 (338)
T ss_dssp CCCTTTTTCC-------------CCCCCCTTSCCHHHHHHHHHHHHHTCCEEEEEECEEESCCSSSSC------------
T ss_pred ccChhhccch------hhccccCCccchHHHHHHHHHHHHHHHHHHcCCcEEEEeCCceECCCCCCCC------------
Confidence 3444421100 00001111 2269999999999999988888999999999999999864310
Q ss_pred CcccchHHHHHHHHhcCCCeEEecCC------CceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHH
Q 011707 319 GVFGTALNRFCVQAAVGHPLTVYGKG------GQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALV 392 (479)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i 392 (479)
...+.. +.....|.+. .++.. ...++|+|++|+|++++.+++++...+ .||++++.+|+.|+++.+
T Consensus 208 ---~~~~~~-~~~~~~g~~~-~~~~~~~~~~~~~~~~~i~v~Dva~a~~~~~~~~~~~~---~~~~~~~~~s~~e~~~~l 279 (338)
T 2rh8_A 208 ---PSSIGL-AMSLITGNEF-LINGMKGMQMLSGSVSIAHVEDVCRAHIFVAEKESASG---RYICCAANTSVPELAKFL 279 (338)
T ss_dssp ---CHHHHH-HHHHHHTCHH-HHHHHHHHHHHHSSEEEEEHHHHHHHHHHHHHCTTCCE---EEEECSEEECHHHHHHHH
T ss_pred ---CchHHH-HHHHHcCCcc-ccccccccccccCcccEEEHHHHHHHHHHHHcCCCcCC---cEEEecCCCCHHHHHHHH
Confidence 111111 1122344322 11111 122489999999999999998754432 789887679999999999
Q ss_pred HHHhhhcC-CcceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHH
Q 011707 393 TKAGEKLG-LDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 393 ~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
.+. .+ .+++....+. . ......+|++|+++|||+|+++++|+++++++|++.
T Consensus 280 ~~~---~~~~~~~~~~~~~---~-~~~~~~~d~~k~~~lG~~p~~~l~~gl~~~~~~~~~ 332 (338)
T 2rh8_A 280 SKR---YPQYKVPTDFGDF---P-PKSKLIISSEKLVKEGFSFKYGIEEIYDESVEYFKA 332 (338)
T ss_dssp HHH---CTTSCCCCCCTTS---C-SSCSCCCCCHHHHHHTCCCSCCHHHHHHHHHHHHHH
T ss_pred HHh---CCCCCCCCCCCCC---C-cCcceeechHHHHHhCCCCCCCHHHHHHHHHHHHHH
Confidence 987 43 2222111111 0 111257899999779999999999999999999875
|
| >2p4h_X Vestitone reductase; NADPH-dependent reductase, isoflavonoid, plant protein; 1.40A {Medicago sativa} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=299.94 Aligned_cols=311 Identities=14% Similarity=0.170 Sum_probs=208.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec-ccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS-LIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
+|+|||||||||||++|+++|+++|++|++++| ....... . ..+..+.. ...++.++.+|++|+
T Consensus 1 ~k~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~~~~~~-------~-------~~~~~~~~-~~~~~~~~~~Dl~d~ 65 (322)
T 2p4h_X 1 KGRVCVTGGTGFLGSWIIKSLLENGYSVNTTIRADPERKRD-------V-------SFLTNLPG-ASEKLHFFNADLSNP 65 (322)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCCC----CC-------C-------HHHHTSTT-HHHHEEECCCCTTCG
T ss_pred CCEEEEECChhHHHHHHHHHHHHCCCEEEEEEeCCccchhH-------H-------HHHHhhhc-cCCceEEEecCCCCH
Confidence 579999999999999999999999999999887 3211000 0 00000000 012578889999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeecccc-ccCCC--CC
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGE-YGTPN--ID 240 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v-~g~~~--~~ 240 (479)
+++.++++ ++|+|||+|+... ....++ ...++++|+.|+.+++++|++. +++ +|||+||.++ |+... .+
T Consensus 66 ~~~~~~~~--~~d~vih~A~~~~--~~~~~~--~~~~~~~nv~gt~~l~~aa~~~~~~~-~iV~~SS~~~~~~~~~~~~~ 138 (322)
T 2p4h_X 66 DSFAAAIE--GCVGIFHTASPID--FAVSEP--EEIVTKRTVDGALGILKACVNSKTVK-RFIYTSSGSAVSFNGKDKDV 138 (322)
T ss_dssp GGGHHHHT--TCSEEEECCCCC------------CHHHHHHHHHHHHHHHHHTTCSSCC-EEEEEEEGGGTSCSSSCCSE
T ss_pred HHHHHHHc--CCCEEEEcCCccc--CCCCCh--HHHHHHHHHHHHHHHHHHHHhcCCcc-EEEEeccHHHcccCCCCCee
Confidence 99999998 7999999997531 111121 2347899999999999999987 676 9999999764 44322 12
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCc-hhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCC
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASS-FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDG 319 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~-~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g 319 (479)
+.|+.+... + ...+..|.. .|+.||+++|.+++.+++++|++++++||++||||+..+..
T Consensus 139 ~~e~~~~~~-----~-~~~~~~p~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~g~~~~~~~------------- 199 (322)
T 2p4h_X 139 LDESDWSDV-----D-LLRSVKPFGWNYAVSKTLAEKAVLEFGEQNGIDVVTLILPFIVGRFVCPKL------------- 199 (322)
T ss_dssp ECTTCCCCH-----H-HHHHHCCTTHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECEEESCCCSSSC-------------
T ss_pred cCCccccch-----h-hhcccCcccccHHHHHHHHHHHHHHHHHhcCCcEEEEcCCceECCCCCCCC-------------
Confidence 333311000 0 000011222 69999999999999988888999999999999999754210
Q ss_pred cccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhhhc
Q 011707 320 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKL 399 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~~~ 399 (479)
...+.. +.....|....+ +. ..++|+|++|+|++++.+++++...| .||++++.+|+.|+++.+.+. .
T Consensus 200 --~~~~~~-~~~~~~g~~~~~-~~--~~~~~i~v~Dva~a~~~~~~~~~~~g---~~~~~~~~~s~~e~~~~i~~~---~ 267 (322)
T 2p4h_X 200 --PDSIEK-ALVLVLGKKEQI-GV--TRFHMVHVDDVARAHIYLLENSVPGG---RYNCSPFIVPIEEMSQLLSAK---Y 267 (322)
T ss_dssp --CHHHHH-HTHHHHSCGGGC-CE--EEEEEEEHHHHHHHHHHHHHSCCCCE---EEECCCEEEEHHHHHHHHHHH---C
T ss_pred --CchHHH-HHHHHhCCCccC-cC--CCcCEEEHHHHHHHHHHHhhCcCCCC---CEEEcCCCCCHHHHHHHHHHh---C
Confidence 111111 222334443322 22 23489999999999999998754333 588655679999999999986 4
Q ss_pred C-CcceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHH
Q 011707 400 G-LDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 400 g-~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
+ .+++........ . ....+.+|++|+++|||+|+++++++++++++|++.
T Consensus 268 ~~~~~~~~~~~~~~-~-~~~~~~~d~~k~~~lG~~p~~~~~~~l~~~~~~~~~ 318 (322)
T 2p4h_X 268 PEYQILTVDELKEI-K-GARLPDLNTKKLVDAGFDFKYTIEDMFDDAIQCCKE 318 (322)
T ss_dssp TTSCCCCTTTTTTC-C-CEECCEECCHHHHHTTCCCCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccccCC-C-CCcceecccHHHHHhCCccCCCHHHHHHHHHHHHHh
Confidence 2 222211000000 1 113466899999779999999999999999999864
|
| >2v6g_A Progesterone 5-beta-reductase; tyrosine-dependent oxidoreductase, oxidoreductase, SDR, cardenolides, cardiac glycosides; HET: NAP; 2.3A {Digitalis lanata} PDB: 2v6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-37 Score=305.98 Aligned_cols=296 Identities=16% Similarity=0.129 Sum_probs=223.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCC-----CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKG-----YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G-----~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
+|+|||||||||||++|+++|+++| ++|++++|...... ....+++++.+|
T Consensus 1 ~~~vlVtGatG~iG~~l~~~L~~~g~~~~~~~V~~~~r~~~~~~------------------------~~~~~~~~~~~D 56 (364)
T 2v6g_A 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAW------------------------HEDNPINYVQCD 56 (364)
T ss_dssp CEEEEEETTTSHHHHHHHHHTTSTTCTTCSEEEEEEESSCCCSC------------------------CCSSCCEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCCCCceEEEEEeCCCCccc------------------------cccCceEEEEee
Confidence 4789999999999999999999999 99999998654210 012478899999
Q ss_pred cCChHHHHHHhhhcC-CCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc--CCcceEE-------Eeec
Q 011707 161 ICDFEFLSESFKSFE-PDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF--RQECHLV-------KLGT 230 (479)
Q Consensus 161 l~d~~~~~~~~~~~~-~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--g~~~~~V-------~~SS 230 (479)
++|.+++.++++..+ +|+|||+||... .+....+++|+.|+.+++++|++. +++ +|| |+||
T Consensus 57 l~d~~~~~~~~~~~~~~d~vih~a~~~~--------~~~~~~~~~n~~~~~~l~~a~~~~~~~~~-~~v~~~g~~i~~Ss 127 (364)
T 2v6g_A 57 ISDPDDSQAKLSPLTDVTHVFYVTWANR--------STEQENCEANSKMFRNVLDAVIPNCPNLK-HISLQTGRKHYMGP 127 (364)
T ss_dssp TTSHHHHHHHHTTCTTCCEEEECCCCCC--------SSHHHHHHHHHHHHHHHHHHHTTTCTTCC-EEEEECCTHHHHCC
T ss_pred cCCHHHHHHHHhcCCCCCEEEECCCCCc--------chHHHHHHHhHHHHHHHHHHHHHhccccc-eEEeccCceEEEec
Confidence 999999999998443 999999999642 123457899999999999999987 676 887 8999
Q ss_pred cccccCCC---CCCcCCceeecCCCCCCCCCCCCC-CCchhhhhhHHHHHHHHHHHHHhC-CceEEeecCeeecCCCCch
Q 011707 231 MGEYGTPN---IDIEEGYITINHNGRTDTLPYPKQ-ASSFYHLSKVHDSHNIAFTCKAWG-IRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 231 ~~v~g~~~---~~~~e~~~~~~~~~~~~~~~~~~~-~~~~Y~~sK~~~E~~~~~~~~~~g-l~~~ivRp~~v~Gp~~~~~ 305 (479)
.++||... .++.|+. +.. +.+.| +.+|++++.++++++ ++++++||++||||+....
T Consensus 128 ~~vyg~~~~~~~~~~E~~--------------~~~~~~~~y----~~~E~~~~~~~~~~~~~~~~ilRp~~v~G~~~~~~ 189 (364)
T 2v6g_A 128 FESYGKIESHDPPYTEDL--------------PRLKYMNFY----YDLEDIMLEEVEKKEGLTWSVHRPGNIFGFSPYSM 189 (364)
T ss_dssp GGGTTTSCCCCSSBCTTS--------------CCCSSCCHH----HHHHHHHHHHHTTSTTCEEEEEEESSEECCCTTCS
T ss_pred hhhccccccCCCCCCccc--------------cCCccchhh----HHHHHHHHHHhhcCCCceEEEECCCceeCCCCCcc
Confidence 99998752 3455541 212 24667 458999988887777 9999999999999986421
Q ss_pred hhhHhhhcccCCCCcccchHHHH-HHHH--hcCCCeEEecCCCc---eeccccHHHHHHHHHHHHhCCCCCCCceEEEeC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRF-CVQA--AVGHPLTVYGKGGQ---TRGYLDIRDTVQCVELAIANPAQPGEFRVFNQF 379 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~-~~~~--~~~~~~~~~~~~~~---~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~ 379 (479)
...++..+ +..+ ..|.++.+++++++ ..+++|++|+|++++.+++++...|+ +||++
T Consensus 190 ---------------~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~v~Dva~a~~~~~~~~~~~g~--~~ni~ 252 (364)
T 2v6g_A 190 ---------------MNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAVDPYAKNE--AFNVS 252 (364)
T ss_dssp ---------------SCHHHHHHHHHHHHHHHTCCBCCCSCHHHHHSCBCCEEHHHHHHHHHHHHHCGGGTTE--EEEEC
T ss_pred ---------------cchHHHHHHHHHHHHhcCCceecCCCcccccccCCCCcHHHHHHHHHHHHhCCCCCCc--eEEec
Confidence 01223332 3333 36777777777643 46778889999999999998654454 99999
Q ss_pred C-CCcCHHHHHHHHHHHhhhcCCcceee--ecCCC----------------------Cccccc------------cc-cc
Q 011707 380 T-EQFSVNQLAALVTKAGEKLGLDVKTI--SVPNP----------------------RVEAEE------------HY-YN 421 (479)
Q Consensus 380 ~-~~~s~~el~~~i~~~~~~~g~~~~~~--~~~~~----------------------~~~~~~------------~~-~~ 421 (479)
+ +.+|+.|+++.+.+. +|.+.... ..|.+ ...... .. +.
T Consensus 253 ~~~~~s~~e~~~~i~~~---~g~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (364)
T 2v6g_A 253 NGDVFKWKHFWKVLAEQ---FGVECGEYEEGVDLKLQDLMKGKEPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFL 329 (364)
T ss_dssp CSCCBCHHHHHHHHHHH---HTCCBCCCCTTCCCCHHHHTTTCHHHHHHHHHHTTCCCCCHHHHCCHHHHHHHHTSCCCC
T ss_pred CCCcCCHHHHHHHHHHH---hCCCCCCCCCCCCccHHHHHhhhHHHHHHHHHHhCCCccccccccccchhhhccccchhh
Confidence 9 579999999999998 77654433 22321 000001 33 57
Q ss_pred CCchHHHHcCCcccccHHHHHHHHHHHHHHh
Q 011707 422 AKHTKLIELGLQPHILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 422 ~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~ 452 (479)
+|++|+++|||+|.++++++++++++|++..
T Consensus 330 ~d~~k~~~lG~~p~~~~~e~l~~~~~~~~~~ 360 (364)
T 2v6g_A 330 DSMNKSKEHGFLGFRNSKNAFISWIDKAKAY 360 (364)
T ss_dssp BCCHHHHHTTCCCCCCHHHHHHHHHHHHHHT
T ss_pred cchHHHHhcCCCCCCCHHHHHHHHHHHHHHc
Confidence 8999998899999999999999999998753
|
| >4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=287.78 Aligned_cols=279 Identities=18% Similarity=0.160 Sum_probs=204.9
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||||||||++|+++|+++||+|+++.|.+.. .. +..| +.
T Consensus 1 MkILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~-----------------------------~~---~~~~----~~ 44 (298)
T 4b4o_A 1 MRVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP-----------------------------GR---ITWD----EL 44 (298)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT-----------------------------TE---EEHH----HH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc-----------------------------Ce---eecc----hh
Confidence 689999999999999999999999999999875321 11 1222 22
Q ss_pred HHHHhhhcCCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcCCc-ceEEEeeccccccCCCC-CCcC
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQE-CHLVKLGTMGEYGTPNI-DIEE 243 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~-~~~V~~SS~~v~g~~~~-~~~e 243 (479)
..+.++ ++|+|||+|+...... ...++.....+++.|+.+|.+++++++..+.+ .+||++||.++||.... +..|
T Consensus 45 ~~~~l~--~~d~vihla~~~i~~~~~~~~~~~~~~~~~~~v~~t~~l~~~~~~~~~~~~~~i~~Ss~~vyg~~~~~~~~E 122 (298)
T 4b4o_A 45 AASGLP--SCDAAVNLAGENILNPLRRWNETFQKEVLGSRLETTQLLAKAITKAPQPPKAWVLVTGVAYYQPSLTAEYDE 122 (298)
T ss_dssp HHHCCC--SCSEEEECCCCCSSCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCCSEEEEEEEGGGSCCCSSCCBCT
T ss_pred hHhhcc--CCCEEEEeccCcccchhhhhhhhhhhhhhhHHHHHHHHHHHHHHHhCCCceEEEEEeeeeeecCCCCCcccc
Confidence 234455 7999999998532211 11122223456789999999999999988754 25899999999998765 4555
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
+ .|..+.+.|+..|...|... .....+++++++||++||||+. .
T Consensus 123 ~--------------~p~~~~~~~~~~~~~~e~~~--~~~~~~~~~~~~r~~~v~g~~~--------------------~ 166 (298)
T 4b4o_A 123 D--------------SPGGDFDFFSNLVTKWEAAA--RLPGDSTRQVVVRSGVVLGRGG--------------------G 166 (298)
T ss_dssp T--------------CCCSCSSHHHHHHHHHHHHH--CCSSSSSEEEEEEECEEECTTS--------------------H
T ss_pred c--------------CCccccchhHHHHHHHHHHH--HhhccCCceeeeeeeeEEcCCC--------------------C
Confidence 4 35566778888887777643 2334689999999999999973 2
Q ss_pred hHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCc
Q 011707 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLD 402 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~ 402 (479)
.+..++.....+.. ..++++++.++||||+|+|++++.+++++...| +||+++ +++|+.|+++.+++. +|.+
T Consensus 167 ~~~~~~~~~~~~~~-~~~g~g~~~~~~ihv~Dva~a~~~~~~~~~~~g---~yn~~~~~~~t~~e~~~~ia~~---lgrp 239 (298)
T 4b4o_A 167 AMGHMLLPFRLGLG-GPIGSGHQFFPWIHIGDLAGILTHALEANHVHG---VLNGVAPSSATNAEFAQTFGAA---LGRR 239 (298)
T ss_dssp HHHHHHHHHHTTCC-CCBTTSCSBCCEEEHHHHHHHHHHHHHCTTCCE---EEEESCSCCCBHHHHHHHHHHH---HTCC
T ss_pred chhHHHHHHhcCCc-ceecccCceeecCcHHHHHHHHHHHHhCCCCCC---eEEEECCCccCHHHHHHHHHHH---hCcC
Confidence 34555555555554 346888999999999999999999999876544 899999 789999999999998 7765
Q ss_pred ceeeecCCCCc---------ccccccccCCchHHHHcCCcccc-cHHHHHHHHHH
Q 011707 403 VKTISVPNPRV---------EAEEHYYNAKHTKLIELGLQPHI-LSDSLLDSLLN 447 (479)
Q Consensus 403 ~~~~~~~~~~~---------~~~~~~~~~d~~k~~~lG~~p~~-~~~~~~~~~~~ 447 (479)
.. ..+|.+.. ..........++|++++||++++ +++++++++++
T Consensus 240 ~~-~pvP~~~~~~~~g~~~~~~~l~~~rv~~~kl~~~Gf~f~yp~l~~al~~l~~ 293 (298)
T 4b4o_A 240 AF-IPLPSAVVQAVFGRQRAIMLLEGQKVIPRRTLATGYQYSFPELGAALKEIAE 293 (298)
T ss_dssp CC-CCBCHHHHHHHHCHHHHHHHHCCCCBCCHHHHHTTCCCSCCSHHHHHHHHHH
T ss_pred Cc-ccCCHHHHHHHhcchhHHHhhCCCEEcHHHHHHCCCCCCCCCHHHHHHHHHH
Confidence 43 22332110 00112345678999999999998 89999999987
|
| >2ggs_A 273AA long hypothetical DTDP-4-dehydrorhamnose reductase; alpha, beta, oxidoreductase; HET: NDP; 1.70A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-35 Score=280.64 Aligned_cols=268 Identities=14% Similarity=0.084 Sum_probs=208.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||||||||++++++|++ |++|++++|.... . .+ +.+|++|+++
T Consensus 1 m~ilVtGatG~iG~~l~~~L~~-g~~V~~~~r~~~~----------------------~------~~---~~~Dl~~~~~ 48 (273)
T 2ggs_A 1 MRTLITGASGQLGIELSRLLSE-RHEVIKVYNSSEI----------------------Q------GG---YKLDLTDFPR 48 (273)
T ss_dssp CCEEEETTTSHHHHHHHHHHTT-TSCEEEEESSSCC----------------------T------TC---EECCTTSHHH
T ss_pred CEEEEECCCChhHHHHHHHHhc-CCeEEEecCCCcC----------------------C------CC---ceeccCCHHH
Confidence 4799999999999999999994 8999999885320 0 12 7899999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCce
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYI 246 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~~ 246 (479)
+.++++..++|+||||||....... ..++...+++|+.++.+++++|++.+ .+|||+||.++|+....++.|+
T Consensus 49 ~~~~~~~~~~d~vi~~a~~~~~~~~---~~~~~~~~~~n~~~~~~l~~~~~~~~--~~iv~~SS~~~~~~~~~~~~e~-- 121 (273)
T 2ggs_A 49 LEDFIIKKRPDVIINAAAMTDVDKC---EIEKEKAYKINAEAVRHIVRAGKVID--SYIVHISTDYVFDGEKGNYKEE-- 121 (273)
T ss_dssp HHHHHHHHCCSEEEECCCCCCHHHH---HHCHHHHHHHHTHHHHHHHHHHHHTT--CEEEEEEEGGGSCSSSCSBCTT--
T ss_pred HHHHHHhcCCCEEEECCcccChhhh---hhCHHHHHHHhHHHHHHHHHHHHHhC--CeEEEEecceeEcCCCCCcCCC--
Confidence 9999985569999999997543211 22346678999999999999999877 3899999999998655455554
Q ss_pred eecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHH
Q 011707 247 TINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~ 326 (479)
.+..+.+.|+.+|+++|.+++. ++++++||+.|||+. .++.
T Consensus 122 ------------~~~~~~~~Y~~sK~~~e~~~~~------~~~~~iR~~~v~G~~---------------------~~~~ 162 (273)
T 2ggs_A 122 ------------DIPNPINYYGLSKLLGETFALQ------DDSLIIRTSGIFRNK---------------------GFPI 162 (273)
T ss_dssp ------------SCCCCSSHHHHHHHHHHHHHCC------TTCEEEEECCCBSSS---------------------SHHH
T ss_pred ------------CCCCCCCHHHHHHHHHHHHHhC------CCeEEEecccccccc---------------------HHHH
Confidence 2445678999999999998865 678999999999832 2344
Q ss_pred HHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhhhcCCcceee
Q 011707 327 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTI 406 (479)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~~~g~~~~~~ 406 (479)
.++..+..+.++.++++ .++++|++|+|++++.+++++. ++ +||++++.+|+.|+++.+.+. +|.+.++.
T Consensus 163 ~~~~~~~~~~~~~~~~~---~~~~~~~~dva~~i~~~~~~~~--~g--~~~i~~~~~s~~e~~~~~~~~---~g~~~~~~ 232 (273)
T 2ggs_A 163 YVYKTLKEGKTVFAFKG---YYSPISARKLASAILELLELRK--TG--IIHVAGERISRFELALKIKEK---FNLPGEVK 232 (273)
T ss_dssp HHHHHHHTTCCEEEESC---EECCCBHHHHHHHHHHHHHHTC--CE--EEECCCCCEEHHHHHHHHHHH---TTCCSCEE
T ss_pred HHHHHHHcCCCEEeecC---CCCceEHHHHHHHHHHHHhcCc--CC--eEEECCCcccHHHHHHHHHHH---hCCChhhc
Confidence 55566677888777654 7899999999999999998753 33 899998679999999999998 88776544
Q ss_pred ecCCC--CcccccccccCCchHHHH-cCCcc-cccHHHHH
Q 011707 407 SVPNP--RVEAEEHYYNAKHTKLIE-LGLQP-HILSDSLL 442 (479)
Q Consensus 407 ~~~~~--~~~~~~~~~~~d~~k~~~-lG~~p-~~~~~~~~ 442 (479)
..... ..........+|++|+++ |||+| .+++++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~d~~k~~~~lG~~p~~~~l~~~~ 272 (273)
T 2ggs_A 233 EVDEVRGWIAKRPYDSSLDSSRARKILSTDFYTLDLDGMV 272 (273)
T ss_dssp EESSCTTCCSCCCSBCCBCCHHHHHHCSSCCCSCCGGGCC
T ss_pred ccccccccccCCCcccccCHHHHHHHhCCCCCCccccccc
Confidence 32111 111223456799999987 99999 57888764
|
| >3oh8_A Nucleoside-diphosphate sugar epimerase (SULA FAMI; DUF1731_C, northeast structural genomics consortium, NESG, C PSI-biology; 2.00A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-35 Score=306.35 Aligned_cols=282 Identities=17% Similarity=0.142 Sum_probs=203.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+|||||||||||++|+++|+++|++|++++|.... ...+.+|+.+.
T Consensus 147 ~m~VLVTGatG~IG~~l~~~L~~~G~~V~~l~R~~~~-------------------------------~~~v~~d~~~~- 194 (516)
T 3oh8_A 147 PLTVAITGSRGLVGRALTAQLQTGGHEVIQLVRKEPK-------------------------------PGKRFWDPLNP- 194 (516)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSSCC-------------------------------TTCEECCTTSC-
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCC-------------------------------ccceeecccch-
Confidence 7899999999999999999999999999999986431 12256777643
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHH-HHHcCCcceEEEeeccccccC-CC-CCCc
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFA-MKEFRQECHLVKLGTMGEYGT-PN-IDIE 242 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~-a~~~g~~~~~V~~SS~~v~g~-~~-~~~~ 242 (479)
+.++++ ++|+|||+||..... .........++++|+.|+.+++++ +++.+++ +|||+||.++||. .. .++.
T Consensus 195 -~~~~l~--~~D~Vih~A~~~~~~--~~~~~~~~~~~~~Nv~gt~~ll~a~a~~~~~~-r~V~~SS~~vyg~~~~~~~~~ 268 (516)
T 3oh8_A 195 -ASDLLD--GADVLVHLAGEPIFG--RFNDSHKEAIRESRVLPTKFLAELVAESTQCT-TMISASAVGFYGHDRGDEILT 268 (516)
T ss_dssp -CTTTTT--TCSEEEECCCC-------CCGGGHHHHHHHTHHHHHHHHHHHHHCSSCC-EEEEEEEGGGGCSEEEEEEEC
T ss_pred -hHHhcC--CCCEEEECCCCcccc--ccchhHHHHHHHHHHHHHHHHHHHHHhcCCCC-EEEEeCcceEecCCCCCCccC
Confidence 345566 899999999975432 112223456789999999999999 5666666 9999999999983 32 2444
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|+ .+ .+.+.|+.+|...|.++.. +...|++++++||++||||+.
T Consensus 269 E~--------------~~-~~~~~y~~~~~~~E~~~~~-~~~~gi~~~ilRp~~v~Gp~~-------------------- 312 (516)
T 3oh8_A 269 EE--------------SE-SGDDFLAEVCRDWEHATAP-ASDAGKRVAFIRTGVALSGRG-------------------- 312 (516)
T ss_dssp TT--------------SC-CCSSHHHHHHHHHHHTTHH-HHHTTCEEEEEEECEEEBTTB--------------------
T ss_pred CC--------------CC-CCcChHHHHHHHHHHHHHH-HHhCCCCEEEEEeeEEECCCC--------------------
Confidence 54 12 2578899999999988654 456799999999999999973
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCC
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~ 401 (479)
.++..++..+..+.. .+++++++.++|+|++|+|++++.+++++...+ +||+++ +.+|+.|+++.+.+. +|.
T Consensus 313 ~~~~~~~~~~~~g~~-~~~g~g~~~~~~i~v~Dva~ai~~~l~~~~~~g---~~ni~~~~~~s~~el~~~i~~~---~g~ 385 (516)
T 3oh8_A 313 GMLPLLKTLFSTGLG-GKFGDGTSWFSWIAIDDLTDIYYRAIVDAQISG---PINAVAPNPVSNADMTKILATS---MHR 385 (516)
T ss_dssp SHHHHHHHTTC---C-CCCTTSCCEECEEEHHHHHHHHHHHHHCTTCCE---EEEESCSCCEEHHHHHHHTTC-------
T ss_pred ChHHHHHHHHHhCCC-cccCCCCceEceEeHHHHHHHHHHHHhCcccCC---cEEEECCCCCCHHHHHHHHHHH---hCC
Confidence 234555555544444 356888899999999999999999999876443 899998 689999999999998 776
Q ss_pred cceeeecCCCC-----c-----ccccccccCCchHHHHcCCccccc-HHHHHHHHHHHH
Q 011707 402 DVKTISVPNPR-----V-----EAEEHYYNAKHTKLIELGLQPHIL-SDSLLDSLLNFA 449 (479)
Q Consensus 402 ~~~~~~~~~~~-----~-----~~~~~~~~~d~~k~~~lG~~p~~~-~~~~~~~~~~~~ 449 (479)
+. ....|... + ........++++|+++|||+|+++ ++++++++++..
T Consensus 386 ~~-~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~kl~~lG~~~~~~~l~e~l~~~l~~~ 443 (516)
T 3oh8_A 386 PA-FIQIPSLGPKILLGSQGAEELALASQRTAPAALENLSHTFRYTDIGAAIAHELGYE 443 (516)
T ss_dssp ------------------CCGGGGGGCEEEECCHHHHHTTCCCSCSSHHHHHHHHHTCC
T ss_pred CC-CCCCCHHHHHHHhCCchhHHHhhcCCeechHHHHHCCCCCCCCCHHHHHHHHhCcc
Confidence 54 22233211 1 111233457889999999999995 999999998754
|
| >4f6c_A AUSA reductase domain protein; thioester reductase, oxidoreductase; 2.81A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-34 Score=291.00 Aligned_cols=315 Identities=12% Similarity=0.106 Sum_probs=221.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhh-----cccCCCceeEEE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW-----KSLTGKNIELYI 158 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~v~ 158 (479)
..+|+|||||||||||++|+++|++.|++|++++|........ ..+.+.+..+ ......++.++.
T Consensus 67 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~----------~~l~~~l~~~~~~~~~~~~~~~v~~v~ 136 (427)
T 4f6c_A 67 RPLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIAW----------YKLMTNLNDYFSEETVEMMLSNIEVIV 136 (427)
T ss_dssp CCCEEEEEECTTSHHHHHHHHHHTTTEEEEEEEEECSSHHHHH----------HHHHHHHHHHSCHHHHHHHHTTEEEEE
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHcCCCEEEEEECCCChHHHH----------HHHHHHHHHhccccccccccCceEEEe
Confidence 4578999999999999999999999999999999865421000 0011111111 111236899999
Q ss_pred cccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCC
Q 011707 159 GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN 238 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~ 238 (479)
+|++|++.+. .+. ++|+||||||..... .++...+++|+.|+.+++++|++ +.+ +|||+||.++ |...
T Consensus 137 ~Dl~d~~~l~-~~~--~~d~Vih~A~~~~~~------~~~~~~~~~Nv~g~~~l~~aa~~-~~~-~~v~~SS~~~-G~~~ 204 (427)
T 4f6c_A 137 GDFECMDDVV-LPE--NMDTIIHAGARTDHF------GDDDEFEKVNVQGTVDVIRLAQQ-HHA-RLIYVSTISV-GTYF 204 (427)
T ss_dssp ECC---CCCC-CSS--CCSEEEECCCCC-------------CHHHHHHHHHHHHHHHHHH-TTC-EEEEEEEGGG-GSEE
T ss_pred CCCCCcccCC-CcC--CCCEEEECCcccCCC------CCHHHHHHHHHHHHHHHHHHHHh-cCC-cEEEECchHh-CCCc
Confidence 9999988787 444 899999999976422 22456789999999999999999 655 9999999988 5421
Q ss_pred ------CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhh
Q 011707 239 ------IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 239 ------~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
.++.|+. ...+..+.+.|+.+|+++|.+++.+++ .|++++++|||+||||......
T Consensus 205 ~~~~~~~~~~E~~-----------~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~g~~~~ivRpg~v~G~~~~~~~------ 266 (427)
T 4f6c_A 205 DIDTEDVTFSEAD-----------VYKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWH------ 266 (427)
T ss_dssp CSSCSCCEECTTC-----------SCSSCCCCSHHHHHHHHHHHHHHHHHH-TTCCEEEEEECCEESCSSSCCC------
T ss_pred cCCCCCccccccc-----------cccCCCCCCchHHHHHHHHHHHHHHHH-cCCCEEEEeCCeeecCCCCCcc------
Confidence 1333331 112244789999999999999998764 6999999999999999865321
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHH
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAAL 391 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~ 391 (479)
........+..++..+..++.++. ++++..++|+|++|+|++++.++..+. .++ +||+++ +++++.|+++.
T Consensus 267 ----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~DvA~ai~~~~~~~~-~g~--~~~l~~~~~~s~~el~~~ 338 (427)
T 4f6c_A 267 ----MRNIKTNRFSMVMNDLLQLDCIGV-SMAEMPVDFSFVDTTARQIVALAQVNT-PQI--IYHVLSPNKMPVKSLLEC 338 (427)
T ss_dssp ----CTTGGGCHHHHHHHHHHHSSEEEH-HHHTCEECCEEHHHHHHHHHHHTTSCC-CCS--EEEESCSCCEEHHHHHHH
T ss_pred ----ccCcchHHHHHHHHHHHhcCCCCC-ccccceEEEeeHHHHHHHHHHHHcCCC-CCC--EEEecCCCCCcHHHHHHH
Confidence 001112346677888888777655 345788999999999999999998876 555 999998 68999999999
Q ss_pred HHHHhhhcCCcceeeecCCCCc----------------ccccccccCCchHH----HHcCCcccccHHHHHHHHHHHHHH
Q 011707 392 VTKAGEKLGLDVKTISVPNPRV----------------EAEEHYYNAKHTKL----IELGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 392 i~~~~~~~g~~~~~~~~~~~~~----------------~~~~~~~~~d~~k~----~~lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
+.+ +| ++....+.+.. ........+|+++. +++||.+....++.++.+++|++.
T Consensus 339 i~~----~g--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~l~~ 412 (427)
T 4f6c_A 339 VKR----KE--IELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKT 412 (427)
T ss_dssp HHS----SC--CEEECHHHHHHHHHHTTCHHHHHHHHHHHTSEECEECCHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHH
T ss_pred HHH----cC--CcccCHHHHHHHHHhcCchhhhhhhhccccCCceeccHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Confidence 998 44 23222221100 00112344666654 458999887778899999998876
Q ss_pred h
Q 011707 452 F 452 (479)
Q Consensus 452 ~ 452 (479)
.
T Consensus 413 ~ 413 (427)
T 4f6c_A 413 I 413 (427)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=279.62 Aligned_cols=238 Identities=16% Similarity=0.200 Sum_probs=194.7
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhC-CC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNK-GY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIG 159 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~-G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 159 (479)
..+++|+|||||||||||++|+++|+++ |+ +|++++|...... +.... +...++.++.+
T Consensus 17 ~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r~~~~~~----------------~~~~~---~~~~~v~~~~~ 77 (344)
T 2gn4_A 17 NMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSRDELKQS----------------EMAME---FNDPRMRFFIG 77 (344)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEESCHHHHH----------------HHHHH---HCCTTEEEEEC
T ss_pred HhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEECChhhHH----------------HHHHH---hcCCCEEEEEC
Confidence 4567899999999999999999999999 97 9999998543210 01111 12357899999
Q ss_pred ccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC
Q 011707 160 DICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI 239 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~ 239 (479)
|++|.+++.++++ ++|+|||+||....+....++ ...+++|+.|+.+++++|.+.+++ +||++||...+
T Consensus 78 Dl~d~~~l~~~~~--~~D~Vih~Aa~~~~~~~~~~~---~~~~~~Nv~gt~~l~~aa~~~~v~-~~V~~SS~~~~----- 146 (344)
T 2gn4_A 78 DVRDLERLNYALE--GVDICIHAAALKHVPIAEYNP---LECIKTNIMGASNVINACLKNAIS-QVIALSTDKAA----- 146 (344)
T ss_dssp CTTCHHHHHHHTT--TCSEEEECCCCCCHHHHHHSH---HHHHHHHHHHHHHHHHHHHHTTCS-EEEEECCGGGS-----
T ss_pred CCCCHHHHHHHHh--cCCEEEECCCCCCCCchhcCH---HHHHHHHHHHHHHHHHHHHhCCCC-EEEEecCCccC-----
Confidence 9999999999998 899999999976543333333 467899999999999999999987 99999996544
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhhhcccC
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEELCNRLD 316 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~ 316 (479)
.|.+.|+.||+++|.+++.++++ .|++++++|||+||||+.
T Consensus 147 ----------------------~p~~~Y~~sK~~~E~~~~~~~~~~~~~g~~~~~vRpg~v~g~~~-------------- 190 (344)
T 2gn4_A 147 ----------------------NPINLYGATKLCSDKLFVSANNFKGSSQTQFSVVRYGNVVGSRG-------------- 190 (344)
T ss_dssp ----------------------SCCSHHHHHHHHHHHHHHHGGGCCCSSCCEEEEECCCEETTCTT--------------
T ss_pred ----------------------CCccHHHHHHHHHHHHHHHHHHHhCCCCcEEEEEEeccEECCCC--------------
Confidence 23579999999999999988764 579999999999999963
Q ss_pred CCCcccchHHHHHHHHhcCC-CeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHH
Q 011707 317 YDGVFGTALNRFCVQAAVGH-PLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKA 395 (479)
Q Consensus 317 ~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~ 395 (479)
.+++.++.++..|+ ++.+. ++...++|+|++|+|++++.+++++. .|+ +||+.++.+|+.|+++.+.+.
T Consensus 191 ------~~i~~~~~~~~~g~~~~~i~-~~~~~r~~i~v~D~a~~v~~~l~~~~-~g~--~~~~~~~~~s~~el~~~i~~~ 260 (344)
T 2gn4_A 191 ------SVVPFFKKLVQNKASEIPIT-DIRMTRFWITLDEGVSFVLKSLKRMH-GGE--IFVPKIPSMKMTDLAKALAPN 260 (344)
T ss_dssp ------SHHHHHHHHHHHTCCCEEES-CTTCEEEEECHHHHHHHHHHHHHHCC-SSC--EEEECCCEEEHHHHHHHHCTT
T ss_pred ------CHHHHHHHHHHcCCCceEEe-CCCeEEeeEEHHHHHHHHHHHHhhcc-CCC--EEecCCCcEEHHHHHHHHHHh
Confidence 34667778888888 77775 67788999999999999999998753 455 999988779999999999864
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-34 Score=272.87 Aligned_cols=260 Identities=13% Similarity=0.135 Sum_probs=200.3
Q ss_pred cEEEEEcCCchhhHHHHHHHHhC--CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNK--GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
|+|||||||||||++++++|+++ |++|++++|..... ..+ ...+++++.+|++|+
T Consensus 1 ~~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--------------------~~l---~~~~~~~~~~D~~d~ 57 (287)
T 2jl1_A 1 FSIAVTGATGQLGGLVIQHLLKKVPASQIIAIVRNVEKA--------------------STL---ADQGVEVRHGDYNQP 57 (287)
T ss_dssp CCEEETTTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTT--------------------HHH---HHTTCEEEECCTTCH
T ss_pred CeEEEEcCCchHHHHHHHHHHHhCCCCeEEEEEcCHHHH--------------------hHH---hhcCCeEEEeccCCH
Confidence 57999999999999999999999 99999999854311 000 014688999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCC
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEG 244 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~ 244 (479)
+++.++++ ++|+|||+|+... . -++|+.++.+++++|++.+++ +|||+||.++|..
T Consensus 58 ~~l~~~~~--~~d~vi~~a~~~~------~-------~~~n~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~~-------- 113 (287)
T 2jl1_A 58 ESLQKAFA--GVSKLLFISGPHY------D-------NTLLIVQHANVVKAARDAGVK-HIAYTGYAFAEES-------- 113 (287)
T ss_dssp HHHHHHTT--TCSEEEECCCCCS------C-------HHHHHHHHHHHHHHHHHTTCS-EEEEEEETTGGGC--------
T ss_pred HHHHHHHh--cCCEEEEcCCCCc------C-------chHHHHHHHHHHHHHHHcCCC-EEEEECCCCCCCC--------
Confidence 99999998 8999999998421 0 057999999999999999987 9999999877621
Q ss_pred ceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccch
Q 011707 245 YITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~ 324 (479)
...|+.+|..+|++++ +.|++++++||+.++|+...
T Consensus 114 -------------------~~~y~~~K~~~E~~~~----~~~~~~~ilrp~~~~~~~~~--------------------- 149 (287)
T 2jl1_A 114 -------------------IIPLAHVHLATEYAIR----TTNIPYTFLRNALYTDFFVN--------------------- 149 (287)
T ss_dssp -------------------CSTHHHHHHHHHHHHH----HTTCCEEEEEECCBHHHHSS---------------------
T ss_pred -------------------CCchHHHHHHHHHHHH----HcCCCeEEEECCEeccccch---------------------
Confidence 1379999999999875 46999999999988876311
Q ss_pred HHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCcc
Q 011707 325 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDV 403 (479)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~ 403 (479)
.++......+.+. .+.++..++|+|++|+|++++.+++++...|+ +||+++ +.+|+.|+++.+.+. +|.++
T Consensus 150 --~~~~~~~~~~~~~-~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~--~~~i~~~~~~s~~e~~~~i~~~---~g~~~ 221 (287)
T 2jl1_A 150 --EGLRASTESGAIV-TNAGSGIVNSVTRNELALAAATVLTEEGHENK--TYNLVSNQPWTFDELAQILSEV---SGKKV 221 (287)
T ss_dssp --GGGHHHHHHTEEE-ESCTTCCBCCBCHHHHHHHHHHHHTSSSCTTE--EEEECCSSCBCHHHHHHHHHHH---HSSCC
T ss_pred --hhHHHHhhCCcee-ccCCCCccCccCHHHHHHHHHHHhcCCCCCCc--EEEecCCCcCCHHHHHHHHHHH---HCCcc
Confidence 1112222222332 45567788999999999999999987655554 999999 589999999999998 88887
Q ss_pred eeeecCCCC----------ccc------------ccccccCCchHHHH-cCCcccccHHHHHHHHHH
Q 011707 404 KTISVPNPR----------VEA------------EEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLN 447 (479)
Q Consensus 404 ~~~~~~~~~----------~~~------------~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~ 447 (479)
++...+... ... ....+..|++++++ || |.++++|+++++++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG--~~~~l~e~l~~~~~ 286 (287)
T 2jl1_A 222 VHQPVSFEEEKNFLVNAGVPEPFTEITAAIYDAISKGEASKTSDDLQKLIG--SLTPLKETVKQALK 286 (287)
T ss_dssp EEEECCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHS--SCCCHHHHHHHHHT
T ss_pred eEEeCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCCCCcCCchHHHHHhC--CCCCHHHHHHHHhc
Confidence 776655320 000 01234578899987 99 77899999998865
|
| >4dqv_A Probable peptide synthetase NRP (peptide synthase; GXXGXXG motif, rossmann fold, short chain dehydrogenase/REDU family, reductase; 2.30A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-33 Score=285.32 Aligned_cols=291 Identities=12% Similarity=0.061 Sum_probs=200.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhC---CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNK---GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIG 159 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~---G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 159 (479)
..++|+|||||||||||++|+++|+++ |++|++++|..........-...+.. ...+....+......++.++.+
T Consensus 70 ~~~~~~VLVTGatG~IG~~l~~~Ll~~~~~g~~V~~l~R~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~~~v~~v~~ 147 (478)
T 4dqv_A 70 SPELRTVLLTGATGFLGRYLVLELLRRLDVDGRLICLVRAESDEDARRRLEKTFDS--GDPELLRHFKELAADRLEVVAG 147 (478)
T ss_dssp CSCCCEEEEECTTSHHHHHHHHHHHHHSCTTCEEEEEECSSSHHHHHHHHHGGGCS--SCHHHHHHHHHHHTTTEEEEEC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHhcCCCCCEEEEEECCCCcHHHHHHHHHHHHh--cchhhhhhhhhhccCceEEEEe
Confidence 346899999999999999999999999 99999999865421100000000000 0000011122223468999999
Q ss_pred ccC------ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccc
Q 011707 160 DIC------DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGE 233 (479)
Q Consensus 160 Dl~------d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v 233 (479)
|++ |.+.+.++++ ++|+||||||..+. ..+...+++|+.|+.+++++|++.+++ +|||+||.++
T Consensus 148 Dl~~~~~gld~~~~~~~~~--~~D~Vih~Aa~~~~-------~~~~~~~~~Nv~gt~~ll~aa~~~~~~-~~V~iSS~~v 217 (478)
T 4dqv_A 148 DKSEPDLGLDQPMWRRLAE--TVDLIVDSAAMVNA-------FPYHELFGPNVAGTAELIRIALTTKLK-PFTYVSTADV 217 (478)
T ss_dssp CTTSGGGGCCHHHHHHHHH--HCCEEEECCSSCSB-------SSCCEEHHHHHHHHHHHHHHHTSSSCC-CEEEEEEGGG
T ss_pred ECCCcccCCCHHHHHHHHc--CCCEEEECccccCC-------cCHHHHHHHHHHHHHHHHHHHHhCCCC-eEEEEeehhh
Confidence 998 6678899988 79999999998654 123456899999999999999998887 9999999999
Q ss_pred ccCCCC-CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhh
Q 011707 234 YGTPNI-DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 234 ~g~~~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
|+.... ++.|+....... . ..+......+.|+.||+++|.+++.++++.|++++++||++|||+......
T Consensus 218 ~~~~~~~~~~E~~~~~p~~-~--~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gi~~~ivRpg~v~G~~~~~g~------ 288 (478)
T 4dqv_A 218 GAAIEPSAFTEDADIRVIS-P--TRTVDGGWAGGYGTSKWAGEVLLREANDLCALPVAVFRCGMILADTSYAGQ------ 288 (478)
T ss_dssp GTTSCTTTCCSSSCHHHHC-C--EEECCTTSEECHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECCSSSSSC------
T ss_pred cCccCCCCcCCcccccccC-c--ccccccccccchHHHHHHHHHHHHHHHHHhCCCeEEEECceeeCCCccCCc------
Confidence 987543 455542110000 0 000011223679999999999999999888999999999999998642100
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeE--EecC------CCceeccccHHHHHHHHHHHHhC----CCCCCCceEEEeCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLT--VYGK------GGQTRGYLDIRDTVQCVELAIAN----PAQPGEFRVFNQFT 380 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~~~v~v~Dva~a~~~~~~~----~~~~g~~~~~ni~~ 380 (479)
.-...++..++......+.++ +++. ++..++|+||+|+|++++.++.+ +...+ ++||+++
T Consensus 289 ------~~~~~~~~~l~~~~~~~g~~P~~~~~~~~~G~~~~~~~~~v~vdDvA~ai~~~~~~~~~~~~~~~--~~ynv~~ 360 (478)
T 4dqv_A 289 ------LNMSDWVTRMVLSLMATGIAPRSFYEPDSEGNRQRAHFDGLPVTFVAEAIAVLGARVAGSSLAGF--ATYHVMN 360 (478)
T ss_dssp ------CCTTBHHHHHHHHHHHHCEEESCSBCCCTTSCCCCCCCCEEEHHHHHHHHHHHHHTTC-CCCCSE--EEEEESC
T ss_pred ------CCHHHHHHHHHHHHHHcCcccccccccccccccccceeeeeeHHHHHHHHHHHHhhcccCCCCCC--ceEEecC
Confidence 001234455555544433222 1111 15678999999999999999986 33333 4999998
Q ss_pred -CC--cCHHHHHHHHHHHhhhcCCcceee
Q 011707 381 -EQ--FSVNQLAALVTKAGEKLGLDVKTI 406 (479)
Q Consensus 381 -~~--~s~~el~~~i~~~~~~~g~~~~~~ 406 (479)
+. +|+.|+++.+.+ .|.+++..
T Consensus 361 ~~~~~~s~~el~~~l~~----~g~~~~~i 385 (478)
T 4dqv_A 361 PHDDGIGLDEYVDWLIE----AGYPIRRI 385 (478)
T ss_dssp CCCSSCSHHHHHHHHHH----TTCSCEEE
T ss_pred CCCCCcCHHHHHHHHHH----cCCCcccC
Confidence 56 999999999998 56655443
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=270.19 Aligned_cols=259 Identities=15% Similarity=0.103 Sum_probs=195.1
Q ss_pred EEEEEcCCchhhHHHHHHHHhC--CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 88 RVMIIGGDGYCGWATALHLSNK--GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|||||||||||++++++|+++ |++|++++|..... ..+ ...++.++.+|++|++
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~--------------------~~~---~~~~~~~~~~D~~d~~ 57 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKA--------------------QAL---AAQGITVRQADYGDEA 57 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTC--------------------HHH---HHTTCEEEECCTTCHH
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhh--------------------hhh---hcCCCeEEEcCCCCHH
Confidence 4899999999999999999999 99999999854311 000 0136889999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCc
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGY 245 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~ 245 (479)
++.++++ ++|+|||+|+.. + ..|+.++.+++++|++.+++ +|||+||.++|..
T Consensus 58 ~~~~~~~--~~d~vi~~a~~~--------~-------~~~~~~~~~l~~a~~~~~~~-~~v~~Ss~~~~~~--------- 110 (286)
T 2zcu_A 58 ALTSALQ--GVEKLLLISSSE--------V-------GQRAPQHRNVINAAKAAGVK-FIAYTSLLHADTS--------- 110 (286)
T ss_dssp HHHHHTT--TCSEEEECC-----------------------CHHHHHHHHHHHHTCC-EEEEEEETTTTTC---------
T ss_pred HHHHHHh--CCCEEEEeCCCC--------c-------hHHHHHHHHHHHHHHHcCCC-EEEEECCCCCCCC---------
Confidence 9999998 899999999841 0 24889999999999999987 9999999877621
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
...|+.+|..+|.+++. .|++++++||+.++++..
T Consensus 111 ------------------~~~y~~sK~~~e~~~~~----~~~~~~ilrp~~~~~~~~----------------------- 145 (286)
T 2zcu_A 111 ------------------PLGLADEHIETEKMLAD----SGIVYTLLRNGWYSENYL----------------------- 145 (286)
T ss_dssp ------------------CSTTHHHHHHHHHHHHH----HCSEEEEEEECCBHHHHH-----------------------
T ss_pred ------------------cchhHHHHHHHHHHHHH----cCCCeEEEeChHHhhhhH-----------------------
Confidence 14799999999998753 699999999987665420
Q ss_pred HHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCcce
Q 011707 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVK 404 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~~ 404 (479)
.++.....++.+. ++++++.++|+|++|+|++++.+++++...|+ +||+++ +.+|+.|+++.+.+. +|.+++
T Consensus 146 -~~~~~~~~~~~~~-~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~--~~~i~~~~~~s~~e~~~~i~~~---~g~~~~ 218 (286)
T 2zcu_A 146 -ASAPAALEHGVFI-GAAGDGKIASATRADYAAAAARVISEAGHEGK--VYELAGDSAWTLTQLAAELTKQ---SGKQVT 218 (286)
T ss_dssp -TTHHHHHHHTEEE-ESCTTCCBCCBCHHHHHHHHHHHHHSSSCTTC--EEEECCSSCBCHHHHHHHHHHH---HSSCCE
T ss_pred -HHhHHhhcCCcee-ccCCCCccccccHHHHHHHHHHHhcCCCCCCc--eEEEeCCCcCCHHHHHHHHHHH---HCCCCc
Confidence 1122333334443 56667889999999999999999998655565 999999 589999999999998 888777
Q ss_pred eeecCCCCc-------ccc---------------cccccCCchHHHH-cCCcccccHHHHHHHHHHHH
Q 011707 405 TISVPNPRV-------EAE---------------EHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFA 449 (479)
Q Consensus 405 ~~~~~~~~~-------~~~---------------~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~ 449 (479)
+...+.... ... ...+..|++++++ ||| |.++++|+++++++|+
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~-~~~~~~e~l~~~~~~~ 285 (286)
T 2zcu_A 219 YQNLSEADFAAALKSVGLPDGLADMLADSDVGASKGGLFDDSKTLSKLIGH-PTTTLAESVSHLFNVN 285 (286)
T ss_dssp EEECCHHHHHHHHTTSSCCHHHHHHHHHHHHHHHTTTTCCCCCHHHHHHTS-CCCCHHHHHHGGGC--
T ss_pred eeeCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCccCchHHHHHhCc-CCCCHHHHHHHHHhhc
Confidence 666553210 000 0124578899987 997 5569999999998876
|
| >4f6l_B AUSA reductase domain protein; thioester reductase, oxidoreductase; 3.86A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-33 Score=291.44 Aligned_cols=314 Identities=12% Similarity=0.104 Sum_probs=221.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhh-----cccCCCceeEEEc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW-----KSLTGKNIELYIG 159 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~v~~v~~ 159 (479)
.+|+|||||||||||++|+++|++.|++|++++|....... ...+.+.+..+ ......++.++.+
T Consensus 149 ~~~~VLVTGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~----------~~~l~~~l~~~~~~~~~~~~~~~v~~v~~ 218 (508)
T 4f6l_B 149 PLGNTLLTGATGFLGAYLIEALQGYSHRIYCFIRADNEEIA----------WYKLMTNLNDYFSEETVEMMLSNIEVIVG 218 (508)
T ss_dssp CCEEEEESCTTSHHHHHHHHHTBTTEEEEEEEEESSSHHHH----------HHHHHHHHHHHSCHHHHHHHSTTEEEEEE
T ss_pred CCCeEEEECCccchHHHHHHHHHhcCCEEEEEECCCChHHH----------HHHHHHHHHHhcccccchhccCceEEEec
Confidence 46899999999999999999999999999999986542100 00111111111 1122468999999
Q ss_pred ccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCC-
Q 011707 160 DICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN- 238 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~- 238 (479)
|++|++.+. ++. ++|+||||||..+... ++...+++|+.|+.+++++|++ +.+ +|||+||.++ |...
T Consensus 219 Dl~d~~~l~-~~~--~~D~Vih~Aa~~~~~~------~~~~~~~~Nv~gt~~ll~~a~~-~~~-~~v~iSS~~v-G~~~~ 286 (508)
T 4f6l_B 219 DFECMDDVV-LPE--NMDTIIHAGARTDHFG------DDDEFEKVNVQGTVDVIRLAQQ-HHA-RLIYVSTISV-GTYFD 286 (508)
T ss_dssp BTTBCSSCC-CSS--CCSEEEECCCC--------------CCHHHHHHHHHHHHHHHHT-TTC-EEEEEEESCT-TSEEC
T ss_pred CCcccccCC-Ccc--CCCEEEECCceecCCC------CHHHHhhhHHHHHHHHHHHHHh-CCC-cEEEeCChhh-ccCCc
Confidence 999987777 444 8999999999764222 2345678999999999999998 555 9999999988 4321
Q ss_pred -----CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 239 -----IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 239 -----~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
.++.|+.. ..+..+.+.|+.+|+++|.+++.+++ .|++++|+||++|||++....+
T Consensus 287 ~~~~~~~~~E~~~-----------~~~~~~~~~Y~~sK~~~E~~~~~~~~-~gi~~~ilRp~~v~G~~~~~~~------- 347 (508)
T 4f6l_B 287 IDTEDVTFSEADV-----------YKGQLLTSPYTRSKFYSELKVLEAVN-NGLDGRIVRVGNLTSPYNGRWH------- 347 (508)
T ss_dssp TTCSCCEECTTCS-----------CSSBCCCSHHHHHHHHHHHHHHHHHH-TTCEEEEEEECCEESCSSSCCC-------
T ss_pred cCCcCcccccccc-----------cccccCCCcHHHHHHHHHHHHHHHHH-cCCCEEEEecceeccCCCCCcc-------
Confidence 13333311 11234689999999999999998764 6999999999999999864311
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHH
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALV 392 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i 392 (479)
..+.....+..++.....++.++. +++++.++|+|++|+|++++.++.++. .++ +||+++ +.+++.|+++.+
T Consensus 348 ---~~~~~~~~~~~~i~~~~~~~~~~~-~~g~~~~~~v~v~DvA~ai~~~~~~~~-~~~--~~nl~~~~~~s~~el~~~i 420 (508)
T 4f6l_B 348 ---MRNIKTNRFSMVMNDLLQLDCIGV-SMAEMPVDFSFVDTTARQIVALAQVNT-PQI--IYHVLSPNKMPVKSLLECV 420 (508)
T ss_dssp ---CTTCTTCHHHHHHHHHTTCSEEET-TGGGSEEECEEHHHHHHHHHHHTTBCC-SCS--EEEESCSCEEEHHHHHHHH
T ss_pred ---cCCcchHHHHHHHHHHHHcCCCCC-CccCceEEEEcHHHHHHHHHHHHhCCC-CCC--EEEeCCCCCCCHHHHHHHH
Confidence 001112346677777777776654 345788999999999999999998876 455 999999 679999999999
Q ss_pred HHHhhhcCCcceeeecCCCCc----------------ccccccccCCchHH----HHcCCcccccHHHHHHHHHHHHHHh
Q 011707 393 TKAGEKLGLDVKTISVPNPRV----------------EAEEHYYNAKHTKL----IELGLQPHILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 393 ~~~~~~~g~~~~~~~~~~~~~----------------~~~~~~~~~d~~k~----~~lG~~p~~~~~~~~~~~~~~~~~~ 452 (479)
.+. + ++....+.+.. ........+|+++. +++||.+....++.++.+++|+...
T Consensus 421 ~~~----~--~~~~~~~~w~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~G~~~~~~~~~~l~~~~~~~~~~ 494 (508)
T 4f6l_B 421 KRK----E--IELVSDESFNEILQKQDMYETIGLTSVDREQQLAMIDTTLTLKIMNHISEKWPTITNNWLYHWAQYIKTI 494 (508)
T ss_dssp HSS----C--CEEECHHHHHHHHHTTCCHHHHHHHHTGGGSEECEECCHHHHHHHHHHSCCCCCCCHHHHHHHHHHHHHH
T ss_pred HHc----C--CcccCHHHHHHHHHhcCCccchhcccccccCcceecchHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHH
Confidence 984 2 23222221110 01112344666654 5589999887789999999998875
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=259.20 Aligned_cols=223 Identities=14% Similarity=0.101 Sum_probs=173.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+|||||||||||++|+++|+++|++|++++|....... + ..++.++.+|++|.+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~-----------------------~-~~~~~~~~~Dl~d~~ 59 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKI-----------------------E-NEHLKVKKADVSSLD 59 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCC-----------------------C-CTTEEEECCCTTCHH
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchh-----------------------c-cCceEEEEecCCCHH
Confidence 5799999999999999999999999999999986542110 0 157899999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCc
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGY 245 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~ 245 (479)
++.++++ ++|+|||+||... .+ ...+++|+.++.+++++|++.+++ +|||+||.++|+.......|+
T Consensus 60 ~~~~~~~--~~d~vi~~a~~~~-----~~----~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~~~~~~~~~~~~- 126 (227)
T 3dhn_A 60 EVCEVCK--GADAVISAFNPGW-----NN----PDIYDETIKVYLTIIDGVKKAGVN-RFLMVGGAGSLFIAPGLRLMD- 126 (227)
T ss_dssp HHHHHHT--TCSEEEECCCC---------------CCSHHHHHHHHHHHHHHHTTCS-EEEEECCSTTSEEETTEEGGG-
T ss_pred HHHHHhc--CCCEEEEeCcCCC-----CC----hhHHHHHHHHHHHHHHHHHHhCCC-EEEEeCChhhccCCCCCcccc-
Confidence 9999999 8999999998531 11 125788999999999999999987 999999988765443322222
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
.+..|.+.|+.+|+++|.+++.++++.|++++++||++||||+.....
T Consensus 127 -------------~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~ilrp~~v~g~~~~~~~------------------- 174 (227)
T 3dhn_A 127 -------------SGEVPENILPGVKALGEFYLNFLMKEKEIDWVFFSPAADMRPGVRTGR------------------- 174 (227)
T ss_dssp -------------TTCSCGGGHHHHHHHHHHHHHTGGGCCSSEEEEEECCSEEESCCCCCC-------------------
T ss_pred -------------CCcchHHHHHHHHHHHHHHHHHHhhccCccEEEEeCCcccCCCccccc-------------------
Confidence 244568899999999999999888778999999999999999764211
Q ss_pred HHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHH
Q 011707 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQ 387 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~e 387 (479)
...+....+.. +.. ++|+|++|+|++++.+++++...|+ +||+++ ++.++.+
T Consensus 175 ------~~~~~~~~~~~-~~~-~~~i~~~Dva~ai~~~l~~~~~~g~--~~~~~~~~~~~~~~ 227 (227)
T 3dhn_A 175 ------YRLGKDDMIVD-IVG-NSHISVEDYAAAMIDELEHPKHHQE--RFTIGYLEHHHHHH 227 (227)
T ss_dssp ------CEEESSBCCCC-TTS-CCEEEHHHHHHHHHHHHHSCCCCSE--EEEEECCSCCC---
T ss_pred ------eeecCCCcccC-CCC-CcEEeHHHHHHHHHHHHhCccccCc--EEEEEeehhcccCC
Confidence 11222222322 222 7999999999999999999888776 999999 7787753
|
| >3st7_A Capsular polysaccharide synthesis enzyme CAP5F; rossmann fold, cupid domain, short-chain dehydrogenase/reduc NADPH; 2.45A {Staphylococcus aureus} PDB: 2zkl_A 3vhr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-33 Score=277.15 Aligned_cols=251 Identities=14% Similarity=0.093 Sum_probs=200.8
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
|+|||||||||||++|+++|+++|+ +|+++|+. +|++
T Consensus 1 M~VlVtGatG~iG~~l~~~L~~~g~~~v~~~d~~------------------------------------------~d~~ 38 (369)
T 3st7_A 1 MNIVITGAKGFVGKNLKADLTSTTDHHIFEVHRQ------------------------------------------TKEE 38 (369)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHCCCEEEECCTT------------------------------------------CCHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEECCC------------------------------------------CCHH
Confidence 5899999999999999999999998 88876530 6788
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCc
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGY 245 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~ 245 (479)
++.++++ ++|+|||+||..... +....+++|+.++.+++++|++.+++++|||+||.++|+
T Consensus 39 ~l~~~~~--~~d~Vih~a~~~~~~-------~~~~~~~~n~~~~~~l~~a~~~~~~~~~~v~~Ss~~~~~---------- 99 (369)
T 3st7_A 39 ELESALL--KADFIVHLAGVNRPE-------HDKEFSLGNVSYLDHVLDILTRNTKKPAILLSSSIQATQ---------- 99 (369)
T ss_dssp HHHHHHH--HCSEEEECCCSBCTT-------CSTTCSSSCCBHHHHHHHHHTTCSSCCEEEEEEEGGGGS----------
T ss_pred HHHHHhc--cCCEEEECCcCCCCC-------CHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEeCchhhcC----------
Confidence 8999998 799999999975421 234467899999999999999998766899999999885
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
.+.|+.+|+++|++++.+++++|++++++||+++|||+..+. +..++
T Consensus 100 ------------------~~~Y~~sK~~~E~~~~~~~~~~g~~~~i~R~~~v~G~~~~~~---------------~~~~~ 146 (369)
T 3st7_A 100 ------------------DNPYGESKLQGEQLLREYAEEYGNTVYIYRWPNLFGKWCKPN---------------YNSVI 146 (369)
T ss_dssp ------------------CSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCTT---------------SSCHH
T ss_pred ------------------CCCchHHHHHHHHHHHHHHHHhCCCEEEEECCceeCCCCCCC---------------cchHH
Confidence 368999999999999999999999999999999999987542 24567
Q ss_pred HHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCC-CCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCcc
Q 011707 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP-GEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDV 403 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~-g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~ 403 (479)
..++..+..+.++.+ +++++.++|+|++|+|++++.+++++... ++ +||+++ +.+|+.|+++.+.+. +|.+.
T Consensus 147 ~~~~~~~~~~~~~~~-~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~~--~~~i~~~~~~s~~e~~~~~~~~---~g~~~ 220 (369)
T 3st7_A 147 ATFCYKIARNEEIQV-NDRNVELTLNYVDDIVAEIKRAIEGTPTIENG--VPTVPNVFKVTLGEIVDLLYKF---KQSRL 220 (369)
T ss_dssp HHHHHHHHTTCCCCC-SCTTCEEEEEEHHHHHHHHHHHHHTCCCEETT--EECCSCCEEEEHHHHHHHHHHH---HHHHH
T ss_pred HHHHHHHHcCCCeEe-cCCCeEEEEEEHHHHHHHHHHHHhCCcccCCc--eEEeCCCCceeHHHHHHHHHHH---hCCCc
Confidence 888888888888766 46788999999999999999999987663 55 999998 579999999999998 66554
Q ss_pred eeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHH
Q 011707 404 KTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSL 445 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~ 445 (479)
++...+.+. ......... |||.|...++..+...
T Consensus 221 ~~~~~~~~~--------~~~~~l~~~~l~~~p~~~~~~~l~~~ 255 (369)
T 3st7_A 221 DRTLPKLDN--------LFEKDLYSTYLSYLPSTDFSYPLLMN 255 (369)
T ss_dssp HTCCCCTTS--------HHHHHHHHHHHHTSCTTCSCCCCCEE
T ss_pred ccccCCCCC--------HHHHHHHHHHhcccCCcceeechhhc
Confidence 433211110 011122344 8899887665554443
|
| >3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse, oxidoreductase; 2.10A {Chromohalobacter salexigens} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.1e-32 Score=257.20 Aligned_cols=235 Identities=18% Similarity=0.228 Sum_probs=186.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+|||||||||||++|+++|+++|++|++++|..... ...++.++.+|++|++
T Consensus 2 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~--------------------------~~~~~~~~~~Dl~d~~ 55 (267)
T 3ay3_A 2 LNRLLVTGAAGGVGSAIRPHLGTLAHEVRLSDIVDLGA--------------------------AEAHEEIVACDLADAQ 55 (267)
T ss_dssp EEEEEEESTTSHHHHHHGGGGGGTEEEEEECCSSCCCC--------------------------CCTTEEECCCCTTCHH
T ss_pred CceEEEECCCCHHHHHHHHHHHhCCCEEEEEeCCCccc--------------------------cCCCccEEEccCCCHH
Confidence 46899999999999999999999999999998854310 0135788899999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCC--CCCcC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN--IDIEE 243 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~--~~~~e 243 (479)
++.++++ ++|+||||||... ..++...+++|+.++.++++++++.+++ +|||+||..+|+... .++.|
T Consensus 56 ~~~~~~~--~~d~vi~~a~~~~-------~~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~~~~~~~~~E 125 (267)
T 3ay3_A 56 AVHDLVK--DCDGIIHLGGVSV-------ERPWNDILQANIIGAYNLYEAARNLGKP-RIVFASSNHTIGYYPRTTRIDT 125 (267)
T ss_dssp HHHHHHT--TCSEEEECCSCCS-------CCCHHHHHHHTHHHHHHHHHHHHHTTCC-EEEEEEEGGGSTTSBTTSCBCT
T ss_pred HHHHHHc--CCCEEEECCcCCC-------CCCHHHHHHHHHHHHHHHHHHHHHhCCC-EEEEeCCHHHhCCCCCCCCCCC
Confidence 9999998 7999999999641 1234567899999999999999998877 999999999998643 24555
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
+ .+..+.+.|+.+|+++|.+++.+++++|++++++||+++|+...
T Consensus 126 ~--------------~~~~~~~~Y~~sK~~~e~~~~~~~~~~gi~~~~lrp~~v~~~~~--------------------- 170 (267)
T 3ay3_A 126 E--------------VPRRPDSLYGLSKCFGEDLASLYYHKFDIETLNIRIGSCFPKPK--------------------- 170 (267)
T ss_dssp T--------------SCCCCCSHHHHHHHHHHHHHHHHHHTTCCCEEEEEECBCSSSCC---------------------
T ss_pred C--------------CCCCCCChHHHHHHHHHHHHHHHHHHcCCCEEEEeceeecCCCC---------------------
Confidence 4 34566789999999999999998888899999999999984210
Q ss_pred hHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhhhcCCcc
Q 011707 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDV 403 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~~~g~~~ 403 (479)
++...++|+|++|+|++++.+++++.... .+||+.++.
T Consensus 171 -------------------~~~~~~~~~~~~dva~~~~~~~~~~~~~~--~~~~~~~~~--------------------- 208 (267)
T 3ay3_A 171 -------------------DARMMATWLSVDDFMRLMKRAFVAPKLGC--TVVYGASAN--------------------- 208 (267)
T ss_dssp -------------------SHHHHHHBCCHHHHHHHHHHHHHSSCCCE--EEEEECCSC---------------------
T ss_pred -------------------CCCeeeccccHHHHHHHHHHHHhCCCCCc--eeEecCCCc---------------------
Confidence 11235689999999999999999765433 378765421
Q ss_pred eeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHH
Q 011707 404 KTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLN 447 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~ 447 (479)
.....|..+++.|||+|+++++++++.+.+
T Consensus 209 --------------~~~~~d~~~~~~lg~~p~~~~~~~~~~~~~ 238 (267)
T 3ay3_A 209 --------------TESWWDNDKSAFLGWVPQDSSEIWREEIEQ 238 (267)
T ss_dssp --------------SSCCBCCGGGGGGCCCCCCCGGGGHHHHHH
T ss_pred --------------cccccCHHHHHHcCCCCCCCHHHHHHHHHh
Confidence 011246666644999999999999988764
|
| >3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding, oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB: 3rfv_A* 3rfx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-31 Score=251.77 Aligned_cols=204 Identities=17% Similarity=0.171 Sum_probs=170.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|+||||||+||||++++++|+++|++|++++|..... ...++.++.+|++|.
T Consensus 2 ~~k~vlVTGasg~IG~~la~~L~~~G~~V~~~~r~~~~~--------------------------~~~~~~~~~~Dl~d~ 55 (267)
T 3rft_A 2 AMKRLLVTGAAGQLGRVMRERLAPMAEILRLADLSPLDP--------------------------AGPNEECVQCDLADA 55 (267)
T ss_dssp CEEEEEEESTTSHHHHHHHHHTGGGEEEEEEEESSCCCC--------------------------CCTTEEEEECCTTCH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCccc--------------------------cCCCCEEEEcCCCCH
Confidence 468999999999999999999999999999999864321 125789999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCC--CCCc
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPN--IDIE 242 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~--~~~~ 242 (479)
+++.++++ ++|+||||||... ..++..++++|+.|+.+++++|++.+.+ +|||+||..+||... .++.
T Consensus 56 ~~~~~~~~--~~D~vi~~Ag~~~-------~~~~~~~~~~N~~g~~~l~~a~~~~~~~-~iv~~SS~~~~g~~~~~~~~~ 125 (267)
T 3rft_A 56 NAVNAMVA--GCDGIVHLGGISV-------EKPFEQILQGNIIGLYNLYEAARAHGQP-RIVFASSNHTIGYYPQTERLG 125 (267)
T ss_dssp HHHHHHHT--TCSEEEECCSCCS-------CCCHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGTTSBTTSCBC
T ss_pred HHHHHHHc--CCCEEEECCCCcC-------cCCHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEEcchHHhCCCCCCCCCC
Confidence 99999999 8999999999732 2234678899999999999999999877 999999999997533 2444
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|+ .+..+.+.|+.||+++|.+++.+++++|++++++||+.|||+..+
T Consensus 126 e~--------------~~~~~~~~Y~~sK~~~e~~~~~~a~~~g~~~~~vr~~~v~~~~~~------------------- 172 (267)
T 3rft_A 126 PD--------------VPARPDGLYGVSKCFGENLARMYFDKFGQETALVRIGSCTPEPNN------------------- 172 (267)
T ss_dssp TT--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECBCSSSCCS-------------------
T ss_pred CC--------------CCCCCCChHHHHHHHHHHHHHHHHHHhCCeEEEEEeecccCCCCC-------------------
Confidence 43 355678999999999999999999999999999999999987422
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
+...++|+|++|+++++..+++.+...+. ++++.+
T Consensus 173 ---------------------~~~~~~~~~~~d~a~~~~~~~~~~~~~~~--~~~~~s 207 (267)
T 3rft_A 173 ---------------------YRMLSTWFSHDDFVSLIEAVFRAPVLGCP--VVWGAS 207 (267)
T ss_dssp ---------------------TTHHHHBCCHHHHHHHHHHHHHCSCCCSC--EEEECC
T ss_pred ---------------------CCceeeEEcHHHHHHHHHHHHhCCCCCce--EEEEeC
Confidence 23456889999999999999998766544 777766
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=262.28 Aligned_cols=285 Identities=15% Similarity=0.133 Sum_probs=203.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+.+|+|||||||||||++|+++|+++|++|++++|..... .+....+..+...+++++.+|++|
T Consensus 8 M~~~~IlVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~----------------~~~~~~~~~l~~~~v~~~~~Dl~d 71 (346)
T 3i6i_A 8 SPKGRVLIAGATGFIGQFVATASLDAHRPTYILARPGPRS----------------PSKAKIFKALEDKGAIIVYGLINE 71 (346)
T ss_dssp ---CCEEEECTTSHHHHHHHHHHHHTTCCEEEEECSSCCC----------------HHHHHHHHHHHHTTCEEEECCTTC
T ss_pred CCCCeEEEECCCcHHHHHHHHHHHHCCCCEEEEECCCCCC----------------hhHHHHHHHHHhCCcEEEEeecCC
Confidence 3467899999999999999999999999999999865211 011111222223689999999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccCCCCCCc
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGTPNIDIE 242 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~~~~~~~ 242 (479)
.+++.++++..++|+|||+|+. .|+.++.+++++|++.| ++ +||+ | +||.. ..
T Consensus 72 ~~~l~~~~~~~~~d~Vi~~a~~------------------~n~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~---~~ 125 (346)
T 3i6i_A 72 QEAMEKILKEHEIDIVVSTVGG------------------ESILDQIALVKAMKAVGTIK-RFLP-S---EFGHD---VN 125 (346)
T ss_dssp HHHHHHHHHHTTCCEEEECCCG------------------GGGGGHHHHHHHHHHHCCCS-EEEC-S---CCSSC---TT
T ss_pred HHHHHHHHhhCCCCEEEECCch------------------hhHHHHHHHHHHHHHcCCce-EEee-c---ccCCC---CC
Confidence 9999999997789999999984 38899999999999999 77 8886 4 35532 12
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|. .+..+.+.|+.+|+.+|++++. .|++++++||+.++|.....
T Consensus 126 e~--------------~~~~p~~~y~~sK~~~e~~l~~----~g~~~tivrpg~~~g~~~~~------------------ 169 (346)
T 3i6i_A 126 RA--------------DPVEPGLNMYREKRRVRQLVEE----SGIPFTYICCNSIASWPYYN------------------ 169 (346)
T ss_dssp TC--------------CCCTTHHHHHHHHHHHHHHHHH----TTCCBEEEECCEESSCCCSC------------------
T ss_pred cc--------------CcCCCcchHHHHHHHHHHHHHH----cCCCEEEEEecccccccCcc------------------
Confidence 21 2445678999999999997754 69999999999999975321
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC--CCcCHHHHHHHHHHHhhhcC
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT--EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~--~~~s~~el~~~i~~~~~~~g 400 (479)
.. ........++.+.++++++..++|+|++|+|++++.++.++...++ +||+.+ +.+|+.|+++.+.+. +|
T Consensus 170 -~~-~~~~~~~~~~~~~~~g~g~~~~~~i~~~Dva~~~~~~l~~~~~~~~--~~~i~g~~~~~s~~e~~~~~~~~---~g 242 (346)
T 3i6i_A 170 -NI-HPSEVLPPTDFFQIYGDGNVKAYFVAGTDIGKFTMKTVDDVRTLNK--SVHFRPSCNCLNINELASVWEKK---IG 242 (346)
T ss_dssp -C------CCCCSSCEEEETTSCCCEEEECHHHHHHHHHHHTTCGGGTTE--EEECCCGGGEECHHHHHHHHHHH---HT
T ss_pred -cc-ccccccCCCceEEEccCCCceEEecCHHHHHHHHHHHHhCccccCe--EEEEeCCCCCCCHHHHHHHHHHH---HC
Confidence 01 1111223566788899999999999999999999999998765554 899974 579999999999998 88
Q ss_pred CcceeeecCCCCc-------cc--------------ccccccCCc-----hHHHH--cCCcccccHHHHHHHHHHHHHHh
Q 011707 401 LDVKTISVPNPRV-------EA--------------EEHYYNAKH-----TKLIE--LGLQPHILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 401 ~~~~~~~~~~~~~-------~~--------------~~~~~~~d~-----~k~~~--lG~~p~~~~~~~~~~~~~~~~~~ 452 (479)
.++++...+.... .. ......++. ..+++ .+++|+ +++|.++.+++|+...
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~t-~~~e~l~~~~~~~~~~ 321 (346)
T 3i6i_A 243 RTLPRVTVTEDDLLAAAGENIIPQSVVAAFTHDIFIKGCQVNFSIDGPEDVEVTTLYPEDSFR-TVEECFGEYIVKMEEK 321 (346)
T ss_dssp SCCCEEEECHHHHHHHHHTCCTTHHHHHHHHHHHHTTCTTTSSCCCSTTEEEHHHHSTTCCCC-CHHHHHHHHHCC----
T ss_pred CCCceEecCHHHHHHHHhcCCChhhhHHHHHHHHhccCCCcccccCCCCcccHHHhCCCCCcC-cHHHHHHHHHHHhhcc
Confidence 8877766553210 00 000001122 12333 456654 7999999988887664
Q ss_pred cc
Q 011707 453 KD 454 (479)
Q Consensus 453 ~~ 454 (479)
++
T Consensus 322 ~~ 323 (346)
T 3i6i_A 322 QP 323 (346)
T ss_dssp --
T ss_pred cc
Confidence 44
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-31 Score=245.46 Aligned_cols=209 Identities=12% Similarity=0.146 Sum_probs=170.0
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC-hH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD-FE 165 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d-~~ 165 (479)
|+|||||||||||++++++|+++|++|++++|....... . .+++++.+|++| ++
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~-----------------------~--~~~~~~~~D~~d~~~ 55 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAGARKVEQVPQ-----------------------Y--NNVKAVHFDVDWTPE 55 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEEESSGGGSCC-----------------------C--TTEEEEECCTTSCHH
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEEECCccchhh-----------------------c--CCceEEEecccCCHH
Confidence 589999999999999999999999999999986542110 0 478999999999 99
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCc
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGY 245 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~ 245 (479)
++.++++ ++|+||||||... ...+++|+.++.+++++|++.+++ +||++||.++++.. +..|.
T Consensus 56 ~~~~~~~--~~d~vi~~ag~~~-----------~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~~--~~~e~- 118 (219)
T 3dqp_A 56 EMAKQLH--GMDAIINVSGSGG-----------KSLLKVDLYGAVKLMQAAEKAEVK-RFILLSTIFSLQPE--KWIGA- 118 (219)
T ss_dssp HHHTTTT--TCSEEEECCCCTT-----------SSCCCCCCHHHHHHHHHHHHTTCC-EEEEECCTTTTCGG--GCCSH-
T ss_pred HHHHHHc--CCCEEEECCcCCC-----------CCcEeEeHHHHHHHHHHHHHhCCC-EEEEECcccccCCC--ccccc-
Confidence 9999998 8999999999644 125688999999999999999987 99999997666422 22221
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
+..+.+.|+.+|+++|++++ +..|++++++||+.+||+.....
T Consensus 119 --------------~~~~~~~Y~~sK~~~e~~~~---~~~~i~~~ilrp~~v~g~~~~~~-------------------- 161 (219)
T 3dqp_A 119 --------------GFDALKDYYIAKHFADLYLT---KETNLDYTIIQPGALTEEEATGL-------------------- 161 (219)
T ss_dssp --------------HHHHTHHHHHHHHHHHHHHH---HSCCCEEEEEEECSEECSCCCSE--------------------
T ss_pred --------------ccccccHHHHHHHHHHHHHH---hccCCcEEEEeCceEecCCCCCc--------------------
Confidence 23457899999999999886 45799999999999999864311
Q ss_pred HHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHH
Q 011707 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAAL 391 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~ 391 (479)
+. . +...+++++++|+|++++.+++++...++ +||++++..++.|+.+.
T Consensus 162 ------------~~-~--~~~~~~~i~~~Dva~~i~~~l~~~~~~g~--~~~i~~g~~~~~e~~~~ 210 (219)
T 3dqp_A 162 ------------ID-I--NDEVSASNTIGDVADTIKELVMTDHSIGK--VISMHNGKTAIKEALES 210 (219)
T ss_dssp ------------EE-E--SSSCCCCEEHHHHHHHHHHHHTCGGGTTE--EEEEEECSEEHHHHHHT
T ss_pred ------------cc-c--CCCcCCcccHHHHHHHHHHHHhCccccCc--EEEeCCCCccHHHHHHH
Confidence 11 1 25678999999999999999998765565 99998888999988764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=248.85 Aligned_cols=218 Identities=14% Similarity=0.162 Sum_probs=170.4
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCce-eEEEcc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNI-ELYIGD 160 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~v~~D 160 (479)
..+++|+|||||||||||++++++|+++|++|++++|..... ..+ ...++ .++.+|
T Consensus 17 ~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~--------------------~~~---~~~~~~~~~~~D 73 (236)
T 3e8x_A 17 LYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQG--------------------PEL---RERGASDIVVAN 73 (236)
T ss_dssp ----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGH--------------------HHH---HHTTCSEEEECC
T ss_pred cCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHH--------------------HHH---HhCCCceEEEcc
Confidence 346799999999999999999999999999999999864421 111 11367 899999
Q ss_pred cCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCC
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNID 240 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~ 240 (479)
++ +.+.+++. ++|+||||||.... .++...+++|+.++.+++++|++.+++ +||++||.+.+..
T Consensus 74 l~--~~~~~~~~--~~D~vi~~ag~~~~-------~~~~~~~~~n~~~~~~l~~a~~~~~~~-~iv~~SS~~~~~~---- 137 (236)
T 3e8x_A 74 LE--EDFSHAFA--SIDAVVFAAGSGPH-------TGADKTILIDLWGAIKTIQEAEKRGIK-RFIMVSSVGTVDP---- 137 (236)
T ss_dssp TT--SCCGGGGT--TCSEEEECCCCCTT-------SCHHHHHHTTTHHHHHHHHHHHHHTCC-EEEEECCTTCSCG----
T ss_pred cH--HHHHHHHc--CCCEEEECCCCCCC-------CCccccchhhHHHHHHHHHHHHHcCCC-EEEEEecCCCCCC----
Confidence 99 67778887 89999999996431 234667899999999999999999987 9999999544321
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCc
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~ 320 (479)
+. .+ .+.+.|+.+|+++|.+++ ..|++++++||+.+||+....
T Consensus 138 --~~--------------~~-~~~~~Y~~sK~~~e~~~~----~~gi~~~~lrpg~v~~~~~~~---------------- 180 (236)
T 3e8x_A 138 --DQ--------------GP-MNMRHYLVAKRLADDELK----RSSLDYTIVRPGPLSNEESTG---------------- 180 (236)
T ss_dssp --GG--------------SC-GGGHHHHHHHHHHHHHHH----HSSSEEEEEEECSEECSCCCS----------------
T ss_pred --CC--------------Ch-hhhhhHHHHHHHHHHHHH----HCCCCEEEEeCCcccCCCCCC----------------
Confidence 10 01 347899999999999875 679999999999999986421
Q ss_pred ccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHH
Q 011707 321 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVT 393 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~ 393 (479)
.+....++...++++|++|+|++++.+++++...|+ +||++++.+++.|+++.++
T Consensus 181 ----------------~~~~~~~~~~~~~~i~~~Dva~~~~~~~~~~~~~g~--~~~v~~~~~~~~e~~~~i~ 235 (236)
T 3e8x_A 181 ----------------KVTVSPHFSEITRSITRHDVAKVIAELVDQQHTIGK--TFEVLNGDTPIAKVVEQLG 235 (236)
T ss_dssp ----------------EEEEESSCSCCCCCEEHHHHHHHHHHHTTCGGGTTE--EEEEEECSEEHHHHHHTC-
T ss_pred ----------------eEEeccCCCcccCcEeHHHHHHHHHHHhcCccccCC--eEEEeCCCcCHHHHHHHhc
Confidence 122334445568999999999999999998765565 9999887899999998765
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=241.72 Aligned_cols=222 Identities=18% Similarity=0.205 Sum_probs=169.7
Q ss_pred cEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
|+|||||||||||++++++|++. |++|++++|...... .+...+++++.+|++|++
T Consensus 1 M~ilVtGatG~iG~~l~~~L~~~~g~~V~~~~R~~~~~~-----------------------~~~~~~v~~~~~D~~d~~ 57 (289)
T 3e48_A 1 MNIMLTGATGHLGTHITNQAIANHIDHFHIGVRNVEKVP-----------------------DDWRGKVSVRQLDYFNQE 57 (289)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCTTEEEEESSGGGSC-----------------------GGGBTTBEEEECCTTCHH
T ss_pred CEEEEEcCCchHHHHHHHHHhhCCCCcEEEEECCHHHHH-----------------------HhhhCCCEEEEcCCCCHH
Confidence 57999999999999999999998 999999998654210 112257999999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCc
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGY 245 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~ 245 (479)
++.++++ ++|+|||+|+.... ...|+.++.+++++|++.|++ +|||+||.+. ..
T Consensus 58 ~l~~~~~--~~d~vi~~a~~~~~-------------~~~~~~~~~~l~~aa~~~gv~-~iv~~Ss~~~---~~------- 111 (289)
T 3e48_A 58 SMVEAFK--GMDTVVFIPSIIHP-------------SFKRIPEVENLVYAAKQSGVA-HIIFIGYYAD---QH------- 111 (289)
T ss_dssp HHHHHTT--TCSEEEECCCCCCS-------------HHHHHHHHHHHHHHHHHTTCC-EEEEEEESCC---ST-------
T ss_pred HHHHHHh--CCCEEEEeCCCCcc-------------chhhHHHHHHHHHHHHHcCCC-EEEEEcccCC---CC-------
Confidence 9999999 89999999985321 135899999999999999988 9999999432 11
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhh--HHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSK--VHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK--~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
...|..++ ..+|. +.++.|++++++||+.+||+.
T Consensus 112 ------------------~~~~~~~~~~~~~e~----~~~~~g~~~~ilrp~~~~~~~---------------------- 147 (289)
T 3e48_A 112 ------------------NNPFHMSPYFGYASR----LLSTSGIDYTYVRMAMYMDPL---------------------- 147 (289)
T ss_dssp ------------------TCCSTTHHHHHHHHH----HHHHHCCEEEEEEECEESTTH----------------------
T ss_pred ------------------CCCCccchhHHHHHH----HHHHcCCCEEEEecccccccc----------------------
Confidence 01122222 23343 334579999999999999973
Q ss_pred hHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhhhcCCcc
Q 011707 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDV 403 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~~~g~~~ 403 (479)
..++..+..+. ..+++.++..++|+|++|+|++++.++.++...|+ +||++++.+|+.|+++.+.+. +|.++
T Consensus 148 --~~~~~~~~~~~-~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~g~--~~~~~~~~~s~~e~~~~~~~~---~g~~~ 219 (289)
T 3e48_A 148 --KPYLPELMNMH-KLIYPAGDGRINYITRNDIARGVIAIIKNPDTWGK--RYLLSGYSYDMKELAAILSEA---SGTEI 219 (289)
T ss_dssp --HHHHHHHHHHT-EECCCCTTCEEEEECHHHHHHHHHHHHHCGGGTTC--EEEECCEEEEHHHHHHHHHHH---HTSCC
T ss_pred --HHHHHHHHHCC-CEecCCCCceeeeEEHHHHHHHHHHHHcCCCcCCc--eEEeCCCcCCHHHHHHHHHHH---HCCce
Confidence 12233333333 23456678889999999999999999998766565 999995569999999999998 88877
Q ss_pred eeeecC
Q 011707 404 KTISVP 409 (479)
Q Consensus 404 ~~~~~~ 409 (479)
.+...+
T Consensus 220 ~~~~~~ 225 (289)
T 3e48_A 220 KYEPVS 225 (289)
T ss_dssp EECCCC
T ss_pred eEEeCC
Confidence 665544
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-29 Score=236.66 Aligned_cols=234 Identities=16% Similarity=0.162 Sum_probs=171.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhC--CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNK--GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
++|+||||||+||||++++++|+++ |++|++++|..... ..+ ..++.++.+|++
T Consensus 3 ~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~--------------------~~~----~~~~~~~~~D~~ 58 (253)
T 1xq6_A 3 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK--------------------EKI----GGEADVFIGDIT 58 (253)
T ss_dssp SCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHH--------------------HHT----TCCTTEEECCTT
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCch--------------------hhc----CCCeeEEEecCC
Confidence 5789999999999999999999999 89999999854311 111 246889999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCccc------ccccc----cccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPY------SMIDR----SRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~------~~~~~----~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~ 232 (479)
|.+++.++++ ++|+||||||...... ...++ +++...+++|+.++.++++++++.+.+ +||++||.+
T Consensus 59 d~~~~~~~~~--~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~SS~~ 135 (253)
T 1xq6_A 59 DADSINPAFQ--GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVGSMG 135 (253)
T ss_dssp SHHHHHHHHT--TCSEEEECCCCCCEECTTCCTTSSCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEEETT
T ss_pred CHHHHHHHHc--CCCEEEEeccccccccccccccccccchhhccccccceeeeHHHHHHHHHHHHHcCCC-EEEEEcCcc
Confidence 9999999998 7999999999753211 01111 122346789999999999999999887 999999987
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhh
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
++.... + ......+.|+.+|+++|.+++ ..|++++++||+.+||+......
T Consensus 136 ~~~~~~-~------------------~~~~~~~~y~~sK~~~e~~~~----~~~i~~~~vrpg~v~~~~~~~~~------ 186 (253)
T 1xq6_A 136 GTNPDH-P------------------LNKLGNGNILVWKRKAEQYLA----DSGTPYTIIRAGGLLDKEGGVRE------ 186 (253)
T ss_dssp TTCTTC-G------------------GGGGGGCCHHHHHHHHHHHHH----TSSSCEEEEEECEEECSCSSSSC------
T ss_pred CCCCCC-c------------------cccccchhHHHHHHHHHHHHH----hCCCceEEEecceeecCCcchhh------
Confidence 652111 0 000112457789999999875 36999999999999999642100
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC----CcCHHHH
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE----QFSVNQL 388 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~----~~s~~el 388 (479)
...+....+++. ..+++|++|+|++++.+++++...++ +||++++ .+|+.|+
T Consensus 187 -------------------~~~~~~~~~~~~---~~~~~~~~Dva~~~~~~~~~~~~~g~--~~~i~~~~~~~~~s~~e~ 242 (253)
T 1xq6_A 187 -------------------LLVGKDDELLQT---DTKTVPRADVAEVCIQALLFEEAKNK--AFDLGSKPEGTSTPTKDF 242 (253)
T ss_dssp -------------------EEEESTTGGGGS---SCCEEEHHHHHHHHHHHTTCGGGTTE--EEEEEECCTTTSCCCCCH
T ss_pred -------------------hhccCCcCCcCC---CCcEEcHHHHHHHHHHHHcCccccCC--EEEecCCCcCCCCCHHHH
Confidence 000000011111 24689999999999999987654454 9999873 4899999
Q ss_pred HHHHHHHhhhcCC
Q 011707 389 AALVTKAGEKLGL 401 (479)
Q Consensus 389 ~~~i~~~~~~~g~ 401 (479)
++.+.+. +|.
T Consensus 243 ~~~~~~~---~g~ 252 (253)
T 1xq6_A 243 KALFSQV---TSR 252 (253)
T ss_dssp HHHHHTC---CCC
T ss_pred HHHHHHH---hCC
Confidence 9999987 664
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-29 Score=228.26 Aligned_cols=216 Identities=14% Similarity=0.165 Sum_probs=145.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||||||||++|+++|+++|++|++++|..... ..+ . .+++++.+|++|+++
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~--------------------~~~---~-~~~~~~~~D~~d~~~ 56 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKI--------------------TQT---H-KDINILQKDIFDLTL 56 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHH--------------------HHH---C-SSSEEEECCGGGCCH
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhh--------------------hhc---c-CCCeEEeccccChhh
Confidence 5799999999999999999999999999999864321 111 1 478999999999987
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccc-cCCCC-CCcCC
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEY-GTPNI-DIEEG 244 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~-g~~~~-~~~e~ 244 (479)
+++. ++|+||||||.... ...+|+.++.+++++|++.+.+ +||++||.+.+ +.+.. +..|+
T Consensus 57 --~~~~--~~d~vi~~ag~~~~------------~~~~~~~~~~~l~~a~~~~~~~-~~v~~SS~~~~~~~~~~~~~~~~ 119 (221)
T 3ew7_A 57 --SDLS--DQNVVVDAYGISPD------------EAEKHVTSLDHLISVLNGTVSP-RLLVVGGAASLQIDEDGNTLLES 119 (221)
T ss_dssp --HHHT--TCSEEEECCCSSTT------------TTTSHHHHHHHHHHHHCSCCSS-EEEEECCCC--------------
T ss_pred --hhhc--CCCEEEECCcCCcc------------ccchHHHHHHHHHHHHHhcCCc-eEEEEecceEEEcCCCCcccccc
Confidence 6777 89999999996321 1367999999999999998877 99999997654 43322 22222
Q ss_pred ceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHH-HhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 245 YITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCK-AWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~-~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
.+..+.+.|+.+|..+|.+. .+.+ ..|++++++||+.+|||+...
T Consensus 120 --------------~~~~~~~~y~~~k~~~e~~~-~~~~~~~gi~~~ivrp~~v~g~~~~~------------------- 165 (221)
T 3ew7_A 120 --------------KGLREAPYYPTARAQAKQLE-HLKSHQAEFSWTYISPSAMFEPGERT------------------- 165 (221)
T ss_dssp -------------------CCCSCCHHHHHHHHH-HHHTTTTTSCEEEEECSSCCCCC----------------------
T ss_pred --------------CCCCCHHHHHHHHHHHHHHH-HHHhhccCccEEEEeCcceecCCCcc-------------------
Confidence 23345678999999999973 3333 679999999999999994321
Q ss_pred hHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHH
Q 011707 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQ 387 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~e 387 (479)
..+ ...+..+.+.+++ .+++|++|+|++++.+++++...|+ +||+++ ...+..|
T Consensus 166 --~~~---~~~~~~~~~~~~~---~~~i~~~Dva~~~~~~l~~~~~~g~--~~~~~~~~~~~~~~ 220 (221)
T 3ew7_A 166 --GDY---QIGKDHLLFGSDG---NSFISMEDYAIAVLDEIERPNHLNE--HFTVAGKLEHHHHH 220 (221)
T ss_dssp --------------------------CCCHHHHHHHHHHHHHSCSCTTS--EEECCC--------
T ss_pred --Cce---EeccccceecCCC---CceEeHHHHHHHHHHHHhCccccCC--EEEECCCCcccccc
Confidence 011 1123333344333 3689999999999999999888777 999998 5555443
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-29 Score=229.18 Aligned_cols=216 Identities=10% Similarity=0.031 Sum_probs=157.7
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||||||||++|+++|+++|++|++++|..... ..+...+++++.+|++|+++
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~-----------------------~~~~~~~~~~~~~D~~d~~~ 57 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA-----------------------ADRLGATVATLVKEPLVLTE 57 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH-----------------------HHHTCTTSEEEECCGGGCCH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccc-----------------------ccccCCCceEEecccccccH
Confidence 5799999999999999999999999999999864321 11123578999999999987
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccccc-CCCC---CCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG-TPNI---DIE 242 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g-~~~~---~~~ 242 (479)
+++. ++|+||||||... .+ ....+|+.++.+++++|++.+ + +||++||.+.+. .... +..
T Consensus 58 --~~~~--~~d~vi~~ag~~~------~~----~~~~~n~~~~~~l~~a~~~~~-~-~~v~~SS~~~~~~~~~~~~~~~~ 121 (224)
T 3h2s_A 58 --ADLD--SVDAVVDALSVPW------GS----GRGYLHLDFATHLVSLLRNSD-T-LAVFILGSASLAMPGADHPMILD 121 (224)
T ss_dssp --HHHT--TCSEEEECCCCCT------TS----SCTHHHHHHHHHHHHTCTTCC-C-EEEEECCGGGSBCTTCSSCGGGG
T ss_pred --hhcc--cCCEEEECCccCC------Cc----chhhHHHHHHHHHHHHHHHcC-C-cEEEEecceeeccCCCCcccccc
Confidence 6777 8999999999751 11 124679999999999999998 6 999999975544 3322 112
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|. ....+.+.|+.+|..+|.+ ..+.++.+++++++||+.+||++... + +.
T Consensus 122 ~~--------------~~~~~~~~y~~sK~~~e~~-~~~~~~~~i~~~ivrp~~v~g~~~~~--------------~-~~ 171 (224)
T 3h2s_A 122 FP--------------ESAASQPWYDGALYQYYEY-QFLQMNANVNWIGISPSEAFPSGPAT--------------S-YV 171 (224)
T ss_dssp CC--------------GGGGGSTTHHHHHHHHHHH-HHHTTCTTSCEEEEEECSBCCCCCCC--------------C-EE
T ss_pred CC--------------CCCccchhhHHHHHHHHHH-HHHHhcCCCcEEEEcCccccCCCccc--------------C-ce
Confidence 21 1223478899999999954 44555679999999999999995421 1 10
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHH
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVN 386 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~ 386 (479)
.....+.+ +...++++|++|+|++++.+++++...++ +|++++ +...+.
T Consensus 172 ----------~~~~~~~~---~~~~~~~i~~~DvA~~~~~~l~~~~~~g~--~~~~~~~~~~~~~ 221 (224)
T 3h2s_A 172 ----------AGKDTLLV---GEDGQSHITTGNMALAILDQLEHPTAIRD--RIVVRDADLEHHH 221 (224)
T ss_dssp ----------EESSBCCC---CTTSCCBCCHHHHHHHHHHHHHSCCCTTS--EEEEEECC-----
T ss_pred ----------eccccccc---CCCCCceEeHHHHHHHHHHHhcCccccCC--EEEEecCcchhcc
Confidence 11111111 23456899999999999999999888777 999998 554443
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-29 Score=239.81 Aligned_cols=235 Identities=17% Similarity=0.115 Sum_probs=178.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
+|+||||||||+||++++++|+++| ++|++++|...... ...+ ...+++++.+|++|+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~------------------~~~l---~~~~~~~~~~D~~d~ 63 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKA------------------AKEL---RLQGAEVVQGDQDDQ 63 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHH------------------HHHH---HHTTCEEEECCTTCH
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHH------------------HHHH---HHCCCEEEEecCCCH
Confidence 5799999999999999999999999 99999998643210 0011 114688999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCC
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEG 244 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~ 244 (479)
+++.++++ ++|+|||+|+.... . ..+.|+.++.+++++|++.|++ +||++|+.++|+...
T Consensus 64 ~~l~~~~~--~~d~vi~~a~~~~~----~-------~~~~~~~~~~~~~~aa~~~gv~-~iv~~S~~~~~~~~~------ 123 (299)
T 2wm3_A 64 VIMELALN--GAYATFIVTNYWES----C-------SQEQEVKQGKLLADLARRLGLH-YVVYSGLENIKKLTA------ 123 (299)
T ss_dssp HHHHHHHT--TCSEEEECCCHHHH----T-------CHHHHHHHHHHHHHHHHHHTCS-EEEECCCCCHHHHTT------
T ss_pred HHHHHHHh--cCCEEEEeCCCCcc----c-------cchHHHHHHHHHHHHHHHcCCC-EEEEEcCccccccCC------
Confidence 99999998 89999999984210 0 1356889999999999999988 999999888876321
Q ss_pred ceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccch
Q 011707 245 YITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~ 324 (479)
..+...|+.+|..+|.+++. .|++++++||+.+||+...
T Consensus 124 ----------------~~~~~~y~~sK~~~e~~~~~----~gi~~~ilrp~~~~~~~~~--------------------- 162 (299)
T 2wm3_A 124 ----------------GRLAAAHFDGKGEVEEYFRD----IGVPMTSVRLPCYFENLLS--------------------- 162 (299)
T ss_dssp ----------------TSCCCHHHHHHHHHHHHHHH----HTCCEEEEECCEEGGGGGT---------------------
T ss_pred ----------------CcccCchhhHHHHHHHHHHH----CCCCEEEEeecHHhhhchh---------------------
Confidence 01246899999999998753 5999999999999997421
Q ss_pred HHHHHHH-HhcCCCeEE-ecCCCceeccccHHHHHHHHHHHHhCCC-CCCCceEEEeCCCCcCHHHHHHHHHHHhhhcCC
Q 011707 325 LNRFCVQ-AAVGHPLTV-YGKGGQTRGYLDIRDTVQCVELAIANPA-QPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 325 ~~~~~~~-~~~~~~~~~-~~~~~~~~~~v~v~Dva~a~~~~~~~~~-~~g~~~~~ni~~~~~s~~el~~~i~~~~~~~g~ 401 (479)
.++.. ...++...+ .+.++..++|+|++|+|++++.++.++. ..|+ +||++++.+|+.|+++.+.+. +|.
T Consensus 163 --~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~g~--~~~~~g~~~s~~e~~~~~~~~---~g~ 235 (299)
T 2wm3_A 163 --HFLPQKAPDGKSYLLSLPTGDVPMDGMSVSDLGPVVLSLLKMPEKYVGQ--NIGLSTCRHTAEEYAALLTKH---TRK 235 (299)
T ss_dssp --TTCCEECTTSSSEEECCCCTTSCEEEECGGGHHHHHHHHHHSHHHHTTC--EEECCSEEECHHHHHHHHHHH---HSS
T ss_pred --hcCCcccCCCCEEEEEecCCCCccceecHHHHHHHHHHHHcChhhhCCe--EEEeeeccCCHHHHHHHHHHH---HCC
Confidence 00111 112322222 3346678899999999999999998742 2455 999998779999999999998 888
Q ss_pred cceeeecC
Q 011707 402 DVKTISVP 409 (479)
Q Consensus 402 ~~~~~~~~ 409 (479)
++.+...+
T Consensus 236 ~~~~~~~~ 243 (299)
T 2wm3_A 236 VVHDAKMT 243 (299)
T ss_dssp CEEECCCC
T ss_pred CceeEecC
Confidence 77655444
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=236.94 Aligned_cols=235 Identities=16% Similarity=0.147 Sum_probs=177.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc-cCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD-ICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D-l~d 163 (479)
.+|+|||||||||||++|+++|+++|++|++++|..... ....+.. ..+++++.+| ++|
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~------------------~~~~l~~--~~~v~~v~~D~l~d 63 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGL------------------IAEELQA--IPNVTLFQGPLLNN 63 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSH------------------HHHHHHT--STTEEEEESCCTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChh------------------hHHHHhh--cCCcEEEECCccCC
Confidence 367899999999999999999999999999999864321 0011111 1368899999 999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccc--cccCCCCC
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMG--EYGTPNID 240 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~--v~g~~~~~ 240 (479)
++++.++++ ++|+||||++... .+.|..+ .+++++|++.| ++ +|||+||.+ .|+.
T Consensus 64 ~~~l~~~~~--~~d~Vi~~a~~~~--------------~~~~~~~-~~l~~aa~~~g~v~-~~V~~SS~~~~~~~~---- 121 (352)
T 1xgk_A 64 VPLMDTLFE--GAHLAFINTTSQA--------------GDEIAIG-KDLADAAKRAGTIQ-HYIYSSMPDHSLYGP---- 121 (352)
T ss_dssp HHHHHHHHT--TCSEEEECCCSTT--------------SCHHHHH-HHHHHHHHHHSCCS-EEEEEECCCGGGTSS----
T ss_pred HHHHHHHHh--cCCEEEEcCCCCC--------------cHHHHHH-HHHHHHHHHcCCcc-EEEEeCCccccccCC----
Confidence 999999998 8999999987421 1347777 99999999998 87 999999964 3421
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCc
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~ 320 (479)
.+.+.|+.+|+.+|++++. .|++++++||+ +||++....
T Consensus 122 ---------------------~~~~~y~~sK~~~E~~~~~----~gi~~~ivrpg-~~g~~~~~~--------------- 160 (352)
T 1xgk_A 122 ---------------------WPAVPMWAPKFTVENYVRQ----LGLPSTFVYAG-IYNNNFTSL--------------- 160 (352)
T ss_dssp ---------------------CCCCTTTHHHHHHHHHHHT----SSSCEEEEEEC-EEGGGCBSS---------------
T ss_pred ---------------------CCCccHHHHHHHHHHHHHH----cCCCEEEEecc-eecCCchhc---------------
Confidence 1246799999999998865 48999999986 689864311
Q ss_pred ccchHHHHHH-H-HhcCCC-eEEecCCCceeccccH-HHHHHHHHHHHhCCCC--CCCceEEEeCCCCcCHHHHHHHHHH
Q 011707 321 FGTALNRFCV-Q-AAVGHP-LTVYGKGGQTRGYLDI-RDTVQCVELAIANPAQ--PGEFRVFNQFTEQFSVNQLAALVTK 394 (479)
Q Consensus 321 ~~~~~~~~~~-~-~~~~~~-~~~~~~~~~~~~~v~v-~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~~s~~el~~~i~~ 394 (479)
+. .++. . ...+.. +.+++++++.++++|+ +|+|++++.+++++.. .++ +||++++.+|+.|+++.+.+
T Consensus 161 ~~----~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~~Dva~ai~~~l~~~~~~~~g~--~~~l~~~~~s~~e~~~~i~~ 234 (352)
T 1xgk_A 161 PY----PLFQMELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGH--RIALTFETLSPVQVCAAFSR 234 (352)
T ss_dssp SC----SSCBEEECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHHTTC--EEEECSEEECHHHHHHHHHH
T ss_pred cc----ccccccccCCCceEEeeccCCCCceeeEecHHHHHHHHHHHHhCCchhhCCe--EEEEecCCCCHHHHHHHHHH
Confidence 00 0010 0 112332 2346667788999999 8999999999986521 355 99999877999999999999
Q ss_pred HhhhcCCcceeeecCCC
Q 011707 395 AGEKLGLDVKTISVPNP 411 (479)
Q Consensus 395 ~~~~~g~~~~~~~~~~~ 411 (479)
. +|.++++...|.+
T Consensus 235 ~---~G~~~~~~~vp~~ 248 (352)
T 1xgk_A 235 A---LNRRVTYVQVPKV 248 (352)
T ss_dssp H---HTSCEEEEECSSC
T ss_pred H---HCCCCceEECCHH
Confidence 8 8988888777744
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.4e-26 Score=209.69 Aligned_cols=202 Identities=15% Similarity=0.159 Sum_probs=155.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+||||||||+||++++++|+++|++|++++|...... .....+++++.+|++|++
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~-----------------------~~~~~~~~~~~~D~~~~~ 59 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLP-----------------------SEGPRPAHVVVGDVLQAA 59 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSC-----------------------SSSCCCSEEEESCTTSHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcc-----------------------cccCCceEEEEecCCCHH
Confidence 479999999999999999999999999999998643210 011257899999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCc
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGY 245 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~ 245 (479)
++.++++ ++|+|||+||.... .++ .++|+.++.++++++++.+++ +||++||.++|+....
T Consensus 60 ~~~~~~~--~~d~vi~~a~~~~~----~~~------~~~n~~~~~~~~~~~~~~~~~-~~v~~Ss~~~~~~~~~------ 120 (206)
T 1hdo_A 60 DVDKTVA--GQDAVIVLLGTRND----LSP------TTVMSEGARNIVAAMKAHGVD-KVVACTSAFLLWDPTK------ 120 (206)
T ss_dssp HHHHHHT--TCSEEEECCCCTTC----CSC------CCHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCTTC------
T ss_pred HHHHHHc--CCCEEEECccCCCC----CCc------cchHHHHHHHHHHHHHHhCCC-eEEEEeeeeeccCccc------
Confidence 9999998 79999999996432 111 258999999999999999887 9999999999875421
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
...+...|+.+|..+|.+++ ..+++++++||+.+ |++... +.+.
T Consensus 121 --------------~~~~~~~y~~~K~~~e~~~~----~~~i~~~~lrp~~~-~~~~~~--------------~~~~--- 164 (206)
T 1hdo_A 121 --------------VPPRLQAVTDDHIRMHKVLR----ESGLKYVAVMPPHI-GDQPLT--------------GAYT--- 164 (206)
T ss_dssp --------------SCGGGHHHHHHHHHHHHHHH----HTCSEEEEECCSEE-ECCCCC--------------SCCE---
T ss_pred --------------ccccchhHHHHHHHHHHHHH----hCCCCEEEEeCCcc-cCCCCC--------------cceE---
Confidence 00146889999999999873 46999999999997 443211 0000
Q ss_pred HHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
....+ ....+++|++|+|++++.+++++...|+ +||++++
T Consensus 165 -------------~~~~~-~~~~~~i~~~Dva~~~~~~~~~~~~~g~--~~~i~~g 204 (206)
T 1hdo_A 165 -------------VTLDG-RGPSRVISKHDLGHFMLRCLTTDEYDGH--STYPSHQ 204 (206)
T ss_dssp -------------EESSS-CSSCSEEEHHHHHHHHHHTTSCSTTTTC--EEEEECC
T ss_pred -------------ecccC-CCCCCccCHHHHHHHHHHHhcCcccccc--ceeeecc
Confidence 00111 1104899999999999999998765566 9999874
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-27 Score=228.04 Aligned_cols=247 Identities=14% Similarity=0.033 Sum_probs=172.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... +......+.++.++.+|++|
T Consensus 3 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~--------------------~~~~~~~~~~~~~~~~Dv~~ 62 (281)
T 3m1a_A 3 ESAKVWLVTGASSGFGRAIAEAAVAAGDTVIGTARRTEAL--------------------DDLVAAYPDRAEAISLDVTD 62 (281)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGG--------------------HHHHHHCTTTEEEEECCTTC
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH--------------------HHHHHhccCCceEEEeeCCC
Confidence 4578999999999999999999999999999999864321 11111123578999999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHH----HHHHcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLF----AMKEFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~----~a~~~g~~~~~V~~SS~~v 233 (479)
.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++ .+++.+.+ +||++||...
T Consensus 63 ~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~-~iv~~sS~~~ 141 (281)
T 3m1a_A 63 GERIDVVAADVLARYGRVDVLVNNAGRTQVGAFEETTERELRDLFELHVFGPARLTRALLPQMRERGSG-SVVNISSFGG 141 (281)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECCCCEEECCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEEcCccc
Confidence 99999888754 7999999999764322 233555677889999999555554 44666666 9999999655
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +..+.+.|+.||++.|.+++.++.+ +|+++++++||.|+++...+...
T Consensus 142 ~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~--- 194 (281)
T 3m1a_A 142 QL------------------------SFAGFSAYSATKAALEQLSEGLADEVAPFGIKVLIVEPGAFRTNLFGKGAA--- 194 (281)
T ss_dssp TC------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTCCCCE---
T ss_pred cC------------------------CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCcccccccccccc---
Confidence 42 2345789999999999999999998 68999999999998875332100
Q ss_pred hhcccCCCCcccchHHHH--HHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC-CcCHHH
Q 011707 311 LCNRLDYDGVFGTALNRF--CVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE-QFSVNQ 387 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~-~~s~~e 387 (479)
............. ......+ .....+.+++|+|++++.+++++... . .|+++++ ...+.+
T Consensus 195 -----~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~dva~a~~~~~~~~~~~-~--~~~l~s~~~~~i~g 257 (281)
T 3m1a_A 195 -----YFSEENPAYAEKVGPTRQLVQG---------SDGSQPGDPAKAAAAIRLALDTEKTP-L--RLALGGDAVDFLTG 257 (281)
T ss_dssp -----EECCBCTTTHHHHHHHHHHHHC--------------CBCHHHHHHHHHHHHHSSSCC-S--EEEESHHHHHHHHH
T ss_pred -----ccCCcchhhHHHhHHHHHHHhh---------ccCCCCCCHHHHHHHHHHHHhCCCCC-e--EEecCchHHHHHHH
Confidence 0000001111111 1111111 22346788999999999999987653 3 8999984 455566
Q ss_pred HHHHHHHH
Q 011707 388 LAALVTKA 395 (479)
Q Consensus 388 l~~~i~~~ 395 (479)
....+.+.
T Consensus 258 ~~~~i~~~ 265 (281)
T 3m1a_A 258 HLDSVRAE 265 (281)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-27 Score=231.54 Aligned_cols=239 Identities=17% Similarity=0.188 Sum_probs=176.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+|||||||||||++++++|+++|++|++++|...... ++..+.+..+...+++++.+|++|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~---------------~~~~~~~~~~~~~~~~~~~~D~~d~~ 68 (313)
T 1qyd_A 4 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSN---------------IDKVQMLLYFKQLGAKLIEASLDDHQ 68 (313)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSC---------------HHHHHHHHHHHTTTCEEECCCSSCHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCCcccc---------------hhHHHHHHHHHhCCeEEEeCCCCCHH
Confidence 578999999999999999999999999999998643110 01111111122357899999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccCCCCCCcCC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGTPNIDIEEG 244 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~~~~~~~e~ 244 (479)
++.++++ ++|+|||+|+.... ..|+.++.+++++|++.| ++ +||+ | +||...... +
T Consensus 69 ~l~~~~~--~~d~vi~~a~~~~~--------------~~~~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~~~~-~- 125 (313)
T 1qyd_A 69 RLVDALK--QVDVVISALAGGVL--------------SHHILEQLKLVEAIKEAGNIK-RFLP-S---EFGMDPDIM-E- 125 (313)
T ss_dssp HHHHHHT--TCSEEEECCCCSSS--------------STTTTTHHHHHHHHHHSCCCS-EEEC-S---CCSSCTTSC-C-
T ss_pred HHHHHHh--CCCEEEECCccccc--------------hhhHHHHHHHHHHHHhcCCCc-eEEe-c---CCcCCcccc-c-
Confidence 9999998 89999999985321 237889999999999998 87 9985 3 455322110 0
Q ss_pred ceeecCCCCCCCCCCCCCC-CchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 245 YITINHNGRTDTLPYPKQA-SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
.+..| ...| .+|..+|++++ +.|++++++||+.++|+...
T Consensus 126 --------------~~~~p~~~~y-~sK~~~e~~~~----~~g~~~~ilrp~~~~~~~~~-------------------- 166 (313)
T 1qyd_A 126 --------------HALQPGSITF-IDKRKVRRAIE----AASIPYTYVSSNMFAGYFAG-------------------- 166 (313)
T ss_dssp --------------CCCSSTTHHH-HHHHHHHHHHH----HTTCCBCEEECCEEHHHHTT--------------------
T ss_pred --------------cCCCCCcchH-HHHHHHHHHHH----hcCCCeEEEEeceecccccc--------------------
Confidence 12122 4678 99999998774 46999999999998875321
Q ss_pred hHHHHHH----HHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC--CCcCHHHHHHHHHHHhh
Q 011707 324 ALNRFCV----QAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT--EQFSVNQLAALVTKAGE 397 (479)
Q Consensus 324 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~--~~~s~~el~~~i~~~~~ 397 (479)
.+.. ....++.+.++++++..++|+|++|+|++++.++.++...++ +|++.+ +.+|+.|+++.+.+.
T Consensus 167 ---~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~Dva~~~~~~l~~~~~~~~--~~~~~g~~~~~s~~e~~~~~~~~-- 239 (313)
T 1qyd_A 167 ---SLAQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNK--TMYIRPPMNILSQKEVIQIWERL-- 239 (313)
T ss_dssp ---TSSCTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGGSSS--EEECCCGGGEEEHHHHHHHHHHH--
T ss_pred ---ccccccccccCCCCeEEEeCCCCceEEEEEHHHHHHHHHHHHhCcccCCc--eEEEeCCCCccCHHHHHHHHHHh--
Confidence 0000 012344556677888899999999999999999988755555 788765 469999999999998
Q ss_pred hcCCcceeeecC
Q 011707 398 KLGLDVKTISVP 409 (479)
Q Consensus 398 ~~g~~~~~~~~~ 409 (479)
+|.++++...+
T Consensus 240 -~g~~~~~~~~~ 250 (313)
T 1qyd_A 240 -SEQNLDKIYIS 250 (313)
T ss_dssp -HTCCCEECCBC
T ss_pred -cCCCCceEECC
Confidence 88887766554
|
| >2a35_A Hypothetical protein PA4017; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-28 Score=225.59 Aligned_cols=199 Identities=13% Similarity=0.031 Sum_probs=154.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+|+||||||+||||++++++|+++|+ +|++++|.... ...++.++.+|++
T Consensus 4 ~~~~vlVtGatG~iG~~l~~~l~~~g~~~~V~~~~r~~~~---------------------------~~~~~~~~~~D~~ 56 (215)
T 2a35_A 4 TPKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALA---------------------------EHPRLDNPVGPLA 56 (215)
T ss_dssp CCCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCC---------------------------CCTTEECCBSCHH
T ss_pred CCceEEEECCCcHHHHHHHHHHHhCCCCCeEEEEeCCCcc---------------------------cCCCceEEecccc
Confidence 467999999999999999999999998 99999875431 0146788899999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIE 242 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~ 242 (479)
|++++.+++ +|+||||||..... ..++...+++|+.++.+++++|++.+.+ +||++||.++|+.
T Consensus 57 ~~~~~~~~~----~d~vi~~a~~~~~~-----~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~~v~~Ss~~~~~~------ 120 (215)
T 2a35_A 57 ELLPQLDGS----IDTAFCCLGTTIKE-----AGSEEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSALGADAK------ 120 (215)
T ss_dssp HHGGGCCSC----CSEEEECCCCCHHH-----HSSHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCTT------
T ss_pred CHHHHHHhh----hcEEEECeeecccc-----CCCHHHHHHhhHHHHHHHHHHHHHcCCC-EEEEECCcccCCC------
Confidence 988777666 89999999964321 2234567899999999999999999887 9999999888753
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCc-eEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIR-ATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~-~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
+.+.|+.+|+++|.+++. .|++ ++++||+.+|||+....
T Consensus 121 --------------------~~~~y~~sK~~~e~~~~~----~~~~~~~~vrp~~v~g~~~~~~---------------- 160 (215)
T 2a35_A 121 --------------------SSIFYNRVKGELEQALQE----QGWPQLTIARPSLLFGPREEFR---------------- 160 (215)
T ss_dssp --------------------CSSHHHHHHHHHHHHHTT----SCCSEEEEEECCSEESTTSCEE----------------
T ss_pred --------------------CccHHHHHHHHHHHHHHH----cCCCeEEEEeCceeeCCCCcch----------------
Confidence 246899999999998764 5899 99999999999975421
Q ss_pred cchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
++ ..+. +...++ .+ ..++++|++|+|++++.+++++. + .+||+++
T Consensus 161 --~~----~~~~-~~~~~~-~~--~~~~~i~~~Dva~~~~~~~~~~~--~--~~~~i~~ 205 (215)
T 2a35_A 161 --LA----EILA-APIARI-LP--GKYHGIEACDLARALWRLALEEG--K--GVRFVES 205 (215)
T ss_dssp --GG----GGTT-CCCC-------CHHHHHHHHHHHHHHHHHHTCCC--S--EEEEEEH
T ss_pred --HH----HHHH-Hhhhhc-cC--CCcCcEeHHHHHHHHHHHHhcCC--C--CceEEcH
Confidence 11 1111 111222 22 26799999999999999999864 3 3999987
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=221.34 Aligned_cols=246 Identities=15% Similarity=0.077 Sum_probs=180.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+. ...++.++.+|++
T Consensus 13 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~--~~~~~~~~~~D~~ 74 (278)
T 2bgk_A 13 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHG----------------QKVCNNIG--SPDVISFVHCDVT 74 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHC--CTTTEEEEECCTT
T ss_pred cccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCChhHH----------------HHHHHHhC--CCCceEEEECCCC
Confidence 46789999999999999999999999999999998754311 01111111 1127899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc---ccccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeec
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA---PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~---~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS 230 (479)
|+++++++++.. ++|+||||||.... +....+.+++...+++|+.|+.++++++... +.+ +||++||
T Consensus 75 ~~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~isS 153 (278)
T 2bgk_A 75 KDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKG-SIVFTAS 153 (278)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCE-EEEEECC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCcccCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcCCC-eEEEEee
Confidence 999998888743 69999999997542 1122344567788999999999999988763 445 9999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
...|.... .+...|+.+|++.|.+++.++.+ +|++++++|||.|+++......
T Consensus 154 ~~~~~~~~-----------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~- 209 (278)
T 2bgk_A 154 ISSFTAGE-----------------------GVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDVF- 209 (278)
T ss_dssp GGGTCCCT-----------------------TSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTSS-
T ss_pred ccccCCCC-----------------------CCCcchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeceecchhhhhhc-
Confidence 87764321 13678999999999999999887 4899999999999999643210
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC-CcC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE-QFS 384 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~-~~s 384 (479)
.. ...+...+....+ .....+++++|+|++++.++..+.. .|+ +|++.++ .++
T Consensus 210 --------------~~-~~~~~~~~~~~~~-------~~~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~gg~~~~ 265 (278)
T 2bgk_A 210 --------------GV-DSSRVEELAHQAA-------NLKGTLLRAEDVADAVAYLAGDESKYVSGL--NLVIDGGYTRT 265 (278)
T ss_dssp --------------SC-CHHHHHHHHHHTC-------SSCSCCCCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTGGGC
T ss_pred --------------cc-chhHHHHhhhccc-------ccccccCCHHHHHHHHHHHcCcccccCCCC--EEEECCccccc
Confidence 00 0111222211111 1234689999999999999975433 355 9999984 699
Q ss_pred HHHHHHHHHHH
Q 011707 385 VNQLAALVTKA 395 (479)
Q Consensus 385 ~~el~~~i~~~ 395 (479)
+.|+++.+.+.
T Consensus 266 ~~e~~~~i~~~ 276 (278)
T 2bgk_A 266 NPAFPTALKHG 276 (278)
T ss_dssp CTHHHHHSCSC
T ss_pred CCccchhhhhh
Confidence 99999887654
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=218.49 Aligned_cols=232 Identities=13% Similarity=0.064 Sum_probs=171.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||++++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 8 ~~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~ 70 (255)
T 1fmc_A 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADAA----------------NHVVDEIQQ-LGGQAFACRCDIT 70 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHHH----------------HHHHHHHHH-TTCCEEEEECCTT
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHH----------------HHHHHHHHH-hCCceEEEEcCCC
Confidence 35789999999999999999999999999999999864321 111111211 1357889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
|+++++++++.. ++|+||||||.........+.+++...+++|+.|+.++++++. +.+.+ +||++||...
T Consensus 71 ~~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~ 149 (255)
T 1fmc_A 71 SEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGG-VILTITSMAA 149 (255)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGG
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcchhh
Confidence 999998888643 7999999999765432233455677889999999999999885 34555 9999999776
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+.. ..+...|+.+|++.|.+++.++.++ |++++++|||.++++....
T Consensus 150 ~~~------------------------~~~~~~Y~~sK~a~~~~~~~~~~~~~~~~i~v~~v~Pg~v~t~~~~~------ 199 (255)
T 1fmc_A 150 ENK------------------------NINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALKS------ 199 (255)
T ss_dssp TCC------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT------
T ss_pred cCC------------------------CCCCcccHHHHHHHHHHHHHHHHHhhhcCcEEEEEecccCcchhhhh------
Confidence 632 2346899999999999999998875 8999999999999874211
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC-CcCH
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE-QFSV 385 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~-~~s~ 385 (479)
.....+......+.+ ...+.+++|+|++++.++..+.. .|+ +||++++ .+|+
T Consensus 200 ------------~~~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~gg~~~s~ 254 (255)
T 1fmc_A 200 ------------VITPEIEQKMLQHTP---------IRRLGQPQDIANAALFLCSPAASWVSGQ--ILTVSGGGVQEL 254 (255)
T ss_dssp ------------TCCHHHHHHHHHTCS---------SCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTSCCCC
T ss_pred ------------ccChHHHHHHHhcCC---------cccCCCHHHHHHHHHHHhCCccccCCCc--EEEECCceeccC
Confidence 001223333333332 23578999999999999976433 355 9999984 4553
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.3e-27 Score=223.07 Aligned_cols=233 Identities=16% Similarity=0.093 Sum_probs=170.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+. .+.++.++.+|++|
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~----~~~~~~~~~~D~~~ 65 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERA----------------RQAAAE----IGPAAYAVQMDVTR 65 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHH----HCTTEEEEECCTTC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHH----hCCCceEEEeeCCC
Confidence 5689999999999999999999999999999998854321 111111 13568899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++... +...+||++||...
T Consensus 66 ~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 145 (259)
T 4e6p_A 66 QDSIDAAIAATVEHAGGLDILVNNAALFDLAPIVEITRESYEKLFAINVAGTLFTLQAAARQMIAQGRGGKIINMASQAG 145 (259)
T ss_dssp HHHHHHHHHHHHHHSSSCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEECChhh
Confidence 99988888754 7999999999865433 23356678889999999999999988543 31239999999655
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +......|+.||++.+.+++.++.++ |+++++++||.|++|....
T Consensus 146 ~~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~------ 195 (259)
T 4e6p_A 146 RR------------------------GEALVAIYCATKAAVISLTQSAGLDLIKHRINVNAIAPGVVDGEHWDG------ 195 (259)
T ss_dssp TS------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTHHH------
T ss_pred cc------------------------CCCCChHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEECCCccchhhh------
Confidence 42 22346889999999999999999886 8999999999999985321
Q ss_pred hhcccCCCCcccchHHHHHHHHhc---CCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAV---GHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
...++..... +.....+.+..+...+.+++|+|++++.++..... .|+ +|++.++.
T Consensus 196 --------------~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~dva~~v~~L~s~~~~~itG~--~i~vdgG~ 256 (259)
T 4e6p_A 196 --------------VDALFARYENRPRGEKKRLVGEAVPFGRMGTAEDLTGMAIFLASAESDYIVSQ--TYNVDGGN 256 (259)
T ss_dssp --------------HHHHHHHHHTCCTTHHHHHHHHHSTTSSCBCTHHHHHHHHHTTSGGGTTCCSC--EEEESTTS
T ss_pred --------------hhhhhhhhccCChHHHHHHHhccCCCCCCcCHHHHHHHHHHHhCCccCCCCCC--EEEECcCh
Confidence 1111111111 11111122234456889999999999998865443 355 99998853
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=215.51 Aligned_cols=227 Identities=15% Similarity=0.069 Sum_probs=167.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||++++++|+++|++|++++|..... .+..+. . .++.++.+|++
T Consensus 4 ~~~~~~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~---~--~~~~~~~~D~~ 62 (244)
T 1cyd_A 4 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSDL----------------VSLAKE---C--PGIEPVCVDLG 62 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHH---S--TTCEEEECCTT
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHh---c--cCCCcEEecCC
Confidence 35689999999999999999999999999999999864321 011111 1 35677899999
Q ss_pred ChHHHHHHhhhc-CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----C-CcceEEEeecccccc
Q 011707 163 DFEFLSESFKSF-EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----R-QECHLVKLGTMGEYG 235 (479)
Q Consensus 163 d~~~~~~~~~~~-~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g-~~~~~V~~SS~~v~g 235 (479)
|.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++... + .+ +||++||...+.
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~-~iv~~sS~~~~~ 141 (244)
T 1cyd_A 63 DWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPG-SIVNVSSMVAHV 141 (244)
T ss_dssp CHHHHHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE-EEEEECCGGGTS
T ss_pred CHHHHHHHHHHcCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCCCe-EEEEEcchhhcC
Confidence 999999999854 4899999999765322 22344567788999999999999888653 4 44 999999987664
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
. ..+...|+.+|++.|.+++.++++ .|++++++|||.++++......
T Consensus 142 ~------------------------~~~~~~Y~~sK~a~~~~~~~~a~~~~~~gi~v~~v~pg~v~t~~~~~~~------ 191 (244)
T 1cyd_A 142 T------------------------FPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVS------ 191 (244)
T ss_dssp C------------------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHHHT------
T ss_pred C------------------------CCCcchhHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCcccCccccccc------
Confidence 2 223678999999999999999988 4899999999999987421100
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
....++..+..+. ..+++++++|+|++++.++..+.....++++++.++
T Consensus 192 -----------~~~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~~~~G~~~~v~gG 240 (244)
T 1cyd_A 192 -----------ADPEFARKLKERH---------PLRKFAEVEDVVNSILFLLSDRSASTSGGGILVDAG 240 (244)
T ss_dssp -----------CCHHHHHHHHHHS---------TTSSCBCHHHHHHHHHHHHSGGGTTCCSSEEEESTT
T ss_pred -----------cCHHHHHHHHhcC---------CccCCCCHHHHHHHHHHHhCchhhcccCCEEEECCC
Confidence 0012223333322 236899999999999999976543222238888775
|
| >3un1_A Probable oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.45A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=217.38 Aligned_cols=216 Identities=17% Similarity=0.094 Sum_probs=168.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... ...++.++.+|++|
T Consensus 26 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~--------------------------~~~~~~~~~~Dv~d 79 (260)
T 3un1_A 26 NQQKVVVITGASQGIGAGLVRAYRDRNYRVVATSRSIKPS--------------------------ADPDIHTVAGDISK 79 (260)
T ss_dssp TTCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCCCC--------------------------SSTTEEEEESCTTS
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhhc--------------------------ccCceEEEEccCCC
Confidence 4689999999999999999999999999999999854311 11368899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+++++..++++|+.|+.++++++ ++.+.+ +||++||...
T Consensus 80 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~ 158 (260)
T 3un1_A 80 PETADRIVREGIERFGRIDSLVNNAGVFLAKPFVEMTQEDYDHNLGVNVAGFFHITQRAAAEMLKQGSG-HIVSITTSLV 158 (260)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCTTT
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc-EEEEEechhh
Confidence 99998888754 7999999999865433 23356678889999999999999988 455555 9999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+... +..+...|+.||++.+.+++.++.++ |+++++++||.|++|.....
T Consensus 159 ~~~~----------------------~~~~~~~Y~~sKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~----- 211 (260)
T 3un1_A 159 DQPM----------------------VGMPSALASLTKGGLNAVTRSLAMEFSRSGVRVNAVSPGVIKTPMHPAE----- 211 (260)
T ss_dssp TSCB----------------------TTCCCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECCBCCTTSCGG-----
T ss_pred ccCC----------------------CCCccHHHHHHHHHHHHHHHHHHHHhCcCCeEEEEEeecCCCCCCCCHH-----
Confidence 4321 22346899999999999999999987 89999999999999864321
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
........ .....+.+++|+|++++.+.+.....|+ +|++.++
T Consensus 212 -----------------~~~~~~~~---------~p~~r~~~~~dva~av~~L~~~~~itG~--~i~vdGG 254 (260)
T 3un1_A 212 -----------------THSTLAGL---------HPVGRMGEIRDVVDAVLYLEHAGFITGE--ILHVDGG 254 (260)
T ss_dssp -----------------GHHHHHTT---------STTSSCBCHHHHHHHHHHHHHCTTCCSC--EEEESTT
T ss_pred -----------------HHHHHhcc---------CCCCCCcCHHHHHHHHHHhcccCCCCCc--EEEECCC
Confidence 01111111 2335678999999999999666555676 9999875
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=225.16 Aligned_cols=238 Identities=16% Similarity=0.170 Sum_probs=173.1
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhh-hhhhhhcccCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIH-DRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
+|+||||||||+||++|+++|+++|++|++++|...... .+ +....+..+...+++++.+|++|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~--------------~~~~~~~~~~~l~~~~v~~v~~D~~d~ 67 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAA--------------NPETKEELIDNYQSLGVILLEGDINDH 67 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSS--------------CHHHHHHHHHHHHHTTCEEEECCTTCH
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccC--------------ChHHHHHHHHHHHhCCCEEEEeCCCCH
Confidence 678999999999999999999999999999998641000 00 011111111124789999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccCCCCCCcC
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGTPNIDIEE 243 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~~~~~~~e 243 (479)
+++.++++ ++|+|||+|+.. ++.++.+++++|++.| ++ +||+ | +||... .|
T Consensus 68 ~~l~~~~~--~~d~vi~~a~~~------------------~~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~---~~ 119 (307)
T 2gas_A 68 ETLVKAIK--QVDIVICAAGRL------------------LIEDQVKIIKAIKEAGNVK-KFFP-S---EFGLDV---DR 119 (307)
T ss_dssp HHHHHHHT--TCSEEEECSSSS------------------CGGGHHHHHHHHHHHCCCS-EEEC-S---CCSSCT---TS
T ss_pred HHHHHHHh--CCCEEEECCccc------------------ccccHHHHHHHHHhcCCce-EEee-c---ccccCc---cc
Confidence 99999999 899999999842 1457789999999998 87 9984 3 355321 11
Q ss_pred CceeecCCCCCCCCCCCCCC-CchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 244 GYITINHNGRTDTLPYPKQA-SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
. .+..| .+.| .+|..+|.+++ +.|++++++||+.++++....
T Consensus 120 ~--------------~~~~p~~~~y-~sK~~~e~~~~----~~~i~~~~lrp~~~~~~~~~~------------------ 162 (307)
T 2gas_A 120 H--------------DAVEPVRQVF-EEKASIRRVIE----AEGVPYTYLCCHAFTGYFLRN------------------ 162 (307)
T ss_dssp C--------------CCCTTHHHHH-HHHHHHHHHHH----HHTCCBEEEECCEETTTTGGG------------------
T ss_pred c--------------cCCCcchhHH-HHHHHHHHHHH----HcCCCeEEEEcceeecccccc------------------
Confidence 0 12223 4678 99999998774 469999999999988864210
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC--CCcCHHHHHHHHHHHhhhcC
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT--EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~--~~~s~~el~~~i~~~~~~~g 400 (479)
+. ........++.+.++++++..++|+|++|+|++++.++.++...++ +|++.+ +.+|+.|+++.+.+. +|
T Consensus 163 -~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~~--~~~~~~~~~~~s~~e~~~~~~~~---~g 235 (307)
T 2gas_A 163 -LA-QLDATDPPRDKVVILGDGNVKGAYVTEADVGTFTIRAANDPNTLNK--AVHIRLPKNYLTQNEVIALWEKK---IG 235 (307)
T ss_dssp -TT-CTTCSSCCSSEEEEETTSCSEEEEECHHHHHHHHHHHHTCGGGTTE--EEECCCGGGEEEHHHHHHHHHHH---HT
T ss_pred -cc-ccccccCCCCeEEEecCCCcceEEeeHHHHHHHHHHHHcCccccCc--eEEEeCCCCcCCHHHHHHHHHHH---hC
Confidence 00 0000112344567778888889999999999999999987654444 788765 469999999999998 88
Q ss_pred CcceeeecC
Q 011707 401 LDVKTISVP 409 (479)
Q Consensus 401 ~~~~~~~~~ 409 (479)
.++++...+
T Consensus 236 ~~~~~~~~~ 244 (307)
T 2gas_A 236 KTLEKTYVS 244 (307)
T ss_dssp SCCEEEEEC
T ss_pred CCCceeecC
Confidence 887776655
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.8e-27 Score=227.61 Aligned_cols=234 Identities=15% Similarity=0.168 Sum_probs=174.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc-ccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI-RRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
+|+||||||||+||++++++|+++|++|++++|.. .... .+....+..+...+++++.+|++|+
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~---------------~~~~~~l~~~~~~~v~~v~~D~~d~ 68 (321)
T 3c1o_A 4 MEKIIIYGGTGYIGKFMVRASLSFSHPTFIYARPLTPDST---------------PSSVQLREEFRSMGVTIIEGEMEEH 68 (321)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECCCCTTCC---------------HHHHHHHHHHHHTTCEEEECCTTCH
T ss_pred ccEEEEEcCCchhHHHHHHHHHhCCCcEEEEECCcccccC---------------hHHHHHHHHhhcCCcEEEEecCCCH
Confidence 67899999999999999999999999999999864 2100 0011111111225789999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccCCCCCCcC
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGTPNIDIEE 243 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~~~~~~~e 243 (479)
+++.++++ ++|+|||+|+.. ++.++.+++++|++.| ++ +||+ | +||... .|
T Consensus 69 ~~l~~a~~--~~d~vi~~a~~~------------------~~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~---~~ 120 (321)
T 3c1o_A 69 EKMVSVLK--QVDIVISALPFP------------------MISSQIHIINAIKAAGNIK-RFLP-S---DFGCEE---DR 120 (321)
T ss_dssp HHHHHHHT--TCSEEEECCCGG------------------GSGGGHHHHHHHHHHCCCC-EEEC-S---CCSSCG---GG
T ss_pred HHHHHHHc--CCCEEEECCCcc------------------chhhHHHHHHHHHHhCCcc-EEec-c---ccccCc---cc
Confidence 99999999 899999999842 2566789999999998 87 8883 3 355321 11
Q ss_pred CceeecCCCCCCCCCCCCCC-CchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 244 GYITINHNGRTDTLPYPKQA-SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
. .+..+ .+.| .+|..+|.+++ +.+++++++||+.++|+.
T Consensus 121 ~--------------~~~~p~~~~y-~sK~~~e~~~~----~~~~~~~~lrp~~~~~~~--------------------- 160 (321)
T 3c1o_A 121 I--------------KPLPPFESVL-EKKRIIRRAIE----AAALPYTYVSANCFGAYF--------------------- 160 (321)
T ss_dssp C--------------CCCHHHHHHH-HHHHHHHHHHH----HHTCCBEEEECCEEHHHH---------------------
T ss_pred c--------------ccCCCcchHH-HHHHHHHHHHH----HcCCCeEEEEeceecccc---------------------
Confidence 1 11122 4578 99999998775 458999999999888752
Q ss_pred chHHHHHH---HHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC--CCcCHHHHHHHHHHHhh
Q 011707 323 TALNRFCV---QAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT--EQFSVNQLAALVTKAGE 397 (479)
Q Consensus 323 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~--~~~s~~el~~~i~~~~~ 397 (479)
+..+.. ....++.+.++++++..++|+|++|+|++++.++.++...|+ +|++.+ +.+|+.|+++.+.+.
T Consensus 161 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~g~--~~~~~g~~~~~t~~e~~~~~~~~-- 234 (321)
T 3c1o_A 161 --VNYLLHPSPHPNRNDDIVIYGTGETKFVLNYEEDIAKYTIKVACDPRCCNR--IVIYRPPKNIISQNELISLWEAK-- 234 (321)
T ss_dssp --HHHHHCCCSSCCTTSCEEEETTSCCEEEEECHHHHHHHHHHHHHCGGGTTE--EEECCCGGGEEEHHHHHHHHHHH--
T ss_pred --ccccccccccccccCceEEecCCCcceeEeeHHHHHHHHHHHHhCccccCe--EEEEeCCCCcccHHHHHHHHHHH--
Confidence 122221 123455677888888899999999999999999998655554 888875 479999999999998
Q ss_pred hcCCcceeeecC
Q 011707 398 KLGLDVKTISVP 409 (479)
Q Consensus 398 ~~g~~~~~~~~~ 409 (479)
+|.++++...+
T Consensus 235 -~g~~~~~~~~~ 245 (321)
T 3c1o_A 235 -SGLSFKKVHMP 245 (321)
T ss_dssp -HTSCCCEEEEC
T ss_pred -cCCcceeeeCC
Confidence 88887766655
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-26 Score=227.19 Aligned_cols=230 Identities=17% Similarity=0.163 Sum_probs=173.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+++||||||||+||++++++|+++|++|++++|..... .+.+.. +...+++++.+|++|++
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~----------------~~~~~~---l~~~~v~~v~~Dl~d~~ 71 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSK----------------TTLLDE---FQSLGAIIVKGELDEHE 71 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSC----------------HHHHHH---HHHTTCEEEECCTTCHH
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCch----------------hhHHHH---hhcCCCEEEEecCCCHH
Confidence 35899999999999999999999999999999864310 001111 11247899999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccCCCCCCcCC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGTPNIDIEEG 244 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~~~~~~~e~ 244 (479)
++.++++ ++|+|||+|+.. ++.++.+++++|++.| ++ +||+ | +||... .|.
T Consensus 72 ~l~~a~~--~~d~vi~~a~~~------------------~~~~~~~l~~aa~~~g~v~-~~v~-S---~~g~~~---~~~ 123 (318)
T 2r6j_A 72 KLVELMK--KVDVVISALAFP------------------QILDQFKILEAIKVAGNIK-RFLP-S---DFGVEE---DRI 123 (318)
T ss_dssp HHHHHHT--TCSEEEECCCGG------------------GSTTHHHHHHHHHHHCCCC-EEEC-S---CCSSCT---TTC
T ss_pred HHHHHHc--CCCEEEECCchh------------------hhHHHHHHHHHHHhcCCCC-EEEe-e---ccccCc---ccc
Confidence 9999999 899999999841 2557789999999998 77 8985 4 355321 110
Q ss_pred ceeecCCCCCCCCCCCCCC-CchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 245 YITINHNGRTDTLPYPKQA-SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
.+..| ...| .+|..+|.+++ +.|++++++||+.+++.
T Consensus 124 --------------~~~~p~~~~y-~sK~~~e~~~~----~~~~~~~~lr~~~~~~~----------------------- 161 (318)
T 2r6j_A 124 --------------NALPPFEALI-ERKRMIRRAIE----EANIPYTYVSANCFASY----------------------- 161 (318)
T ss_dssp --------------CCCHHHHHHH-HHHHHHHHHHH----HTTCCBEEEECCEEHHH-----------------------
T ss_pred --------------cCCCCcchhH-HHHHHHHHHHH----hcCCCeEEEEcceehhh-----------------------
Confidence 11122 3568 99999998774 46999999999887654
Q ss_pred hHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC--CCcCHHHHHHHHHHHhhhcCC
Q 011707 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT--EQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~--~~~s~~el~~~i~~~~~~~g~ 401 (479)
++..++.....++.+.++++++..++|+|++|++++++.++.++...++ +|++.+ +.+|+.|+++.+.+. +|.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~~--~~~~~g~~~~~s~~e~~~~~~~~---~g~ 236 (318)
T 2r6j_A 162 FINYLLRPYDPKDEITVYGTGEAKFAMNYEQDIGLYTIKVATDPRALNR--VVIYRPSTNIITQLELISRWEKK---IGK 236 (318)
T ss_dssp HHHHHHCTTCCCSEEEEETTSCCEEEEECHHHHHHHHHHHTTCGGGTTE--EEECCCGGGEEEHHHHHHHHHHH---HTC
T ss_pred hhhhhccccCCCCceEEecCCCceeeEeeHHHHHHHHHHHhcCccccCe--EEEecCCCCccCHHHHHHHHHHH---hCC
Confidence 1223333334556677888888899999999999999999987654444 788764 469999999999998 888
Q ss_pred cceeeecC
Q 011707 402 DVKTISVP 409 (479)
Q Consensus 402 ~~~~~~~~ 409 (479)
++++...+
T Consensus 237 ~~~~~~~~ 244 (318)
T 2r6j_A 237 KFKKIHVP 244 (318)
T ss_dssp CCEEEEEC
T ss_pred CCceeecC
Confidence 88776655
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=214.77 Aligned_cols=207 Identities=14% Similarity=0.073 Sum_probs=156.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
++|+||||||+||||++++++|+++|+ +|++++|....... ....++.++.+|++
T Consensus 17 ~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~-----------------------~~~~~~~~~~~D~~ 73 (242)
T 2bka_A 17 QNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE-----------------------EAYKNVNQEVVDFE 73 (242)
T ss_dssp TCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS-----------------------GGGGGCEEEECCGG
T ss_pred cCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccc-----------------------cccCCceEEecCcC
Confidence 478999999999999999999999999 99999986432100 00136788999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIE 242 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~ 242 (479)
|++++.++++ ++|+||||||...... ++...+++|+.++.++++++++.+.+ +||++||.++|+.+
T Consensus 74 d~~~~~~~~~--~~d~vi~~ag~~~~~~------~~~~~~~~n~~~~~~~~~~~~~~~~~-~iv~~SS~~~~~~~----- 139 (242)
T 2bka_A 74 KLDDYASAFQ--GHDVGFCCLGTTRGKA------GAEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSSKGADKSS----- 139 (242)
T ss_dssp GGGGGGGGGS--SCSEEEECCCCCHHHH------HHHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCTTC-----
T ss_pred CHHHHHHHhc--CCCEEEECCCcccccC------CcccceeeeHHHHHHHHHHHHHCCCC-EEEEEccCcCCCCC-----
Confidence 9999999998 8999999999643211 13457889999999999999998877 99999998887521
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCC-ceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGI-RATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl-~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
.+.|+.+|+++|.+++. .++ +++++|||.+|||...+.
T Consensus 140 ---------------------~~~Y~~sK~~~e~~~~~----~~~~~~~~vrpg~v~~~~~~~~---------------- 178 (242)
T 2bka_A 140 ---------------------NFLYLQVKGEVEAKVEE----LKFDRYSVFRPGVLLCDRQESR---------------- 178 (242)
T ss_dssp ---------------------SSHHHHHHHHHHHHHHT----TCCSEEEEEECCEEECTTGGGS----------------
T ss_pred ---------------------cchHHHHHHHHHHHHHh----cCCCCeEEEcCceecCCCCCCc----------------
Confidence 46899999999998754 478 699999999999964321
Q ss_pred cchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeC
Q 011707 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQF 379 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~ 379 (479)
....+........+. .++ ...+++++|+|++++.++.++...+ .+++.
T Consensus 179 --~~~~~~~~~~~~~~~-~~~----~~~~~~~~dva~~~~~~~~~~~~~~---~~~~~ 226 (242)
T 2bka_A 179 --PGEWLVRKFFGSLPD-SWA----SGHSVPVVTVVRAMLNNVVRPRDKQ---MELLE 226 (242)
T ss_dssp --HHHHHHHHHHCSCCT-TGG----GGTEEEHHHHHHHHHHHHTSCCCSS---EEEEE
T ss_pred --HHHHHHHHhhcccCc-ccc----CCcccCHHHHHHHHHHHHhCccccC---eeEee
Confidence 112223333222221 111 2358999999999999999876543 56654
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-27 Score=227.22 Aligned_cols=238 Identities=18% Similarity=0.231 Sum_probs=174.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+|||||||||||++++++|+++|++|++++|....... ++....+..+...+++++.+|++|++
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~--------------~~~~~~~~~l~~~~v~~v~~D~~d~~ 69 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSN--------------SEKAQLLESFKASGANIVHGSIDDHA 69 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTT--------------HHHHHHHHHHHTTTCEEECCCTTCHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccC--------------HHHHHHHHHHHhCCCEEEEeccCCHH
Confidence 5789999999999999999999999999999886431100 01111111222357899999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccCCCCCCcCC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGTPNIDIEEG 244 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~~~~~~~e~ 244 (479)
++.++++ ++|+|||+|+.. ++.++.+++++|++.| ++ +||+ |+ ||... .|.
T Consensus 70 ~l~~~~~--~~d~vi~~a~~~------------------~~~~~~~l~~aa~~~g~v~-~~v~-S~---~g~~~---~~~ 121 (308)
T 1qyc_A 70 SLVEAVK--NVDVVISTVGSL------------------QIESQVNIIKAIKEVGTVK-RFFP-SE---FGNDV---DNV 121 (308)
T ss_dssp HHHHHHH--TCSEEEECCCGG------------------GSGGGHHHHHHHHHHCCCS-EEEC-SC---CSSCT---TSC
T ss_pred HHHHHHc--CCCEEEECCcch------------------hhhhHHHHHHHHHhcCCCc-eEee-cc---cccCc---ccc
Confidence 9999999 899999999842 2456789999999998 77 8984 43 44321 111
Q ss_pred ceeecCCCCCCCCCCCCCC-CchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 245 YITINHNGRTDTLPYPKQA-SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~-~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
.+..| ...| .+|..+|.+++ +.+++++++||+.++|+....
T Consensus 122 --------------~~~~p~~~~y-~sK~~~e~~~~----~~~~~~~~~r~~~~~~~~~~~------------------- 163 (308)
T 1qyc_A 122 --------------HAVEPAKSVF-EVKAKVRRAIE----AEGIPYTYVSSNCFAGYFLRS------------------- 163 (308)
T ss_dssp --------------CCCTTHHHHH-HHHHHHHHHHH----HHTCCBEEEECCEEHHHHTTT-------------------
T ss_pred --------------ccCCcchhHH-HHHHHHHHHHH----hcCCCeEEEEeceeccccccc-------------------
Confidence 12223 3568 99999998775 358999999999998753210
Q ss_pred hHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC--CCcCHHHHHHHHHHHhhhcCC
Q 011707 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT--EQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~--~~~s~~el~~~i~~~~~~~g~ 401 (479)
+. ........++.+.++++++..++|+|++|++++++.++.++...++ +|++.+ +.+|+.|+++.+.+. +|.
T Consensus 164 ~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~Dva~~~~~~l~~~~~~~~--~~~~~g~~~~~s~~e~~~~~~~~---~g~ 237 (308)
T 1qyc_A 164 LA-QAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNK--TLYLRLPANTLSLNELVALWEKK---IDK 237 (308)
T ss_dssp TT-CTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGGTTE--EEECCCGGGEEEHHHHHHHHHHH---TTS
T ss_pred cc-cccccCCCCCceEEecCCCceEEEecHHHHHHHHHHHHhCccccCe--EEEEeCCCCccCHHHHHHHHHHH---hCC
Confidence 00 0000112445677888888899999999999999999987654444 888865 469999999999998 898
Q ss_pred cceeeecC
Q 011707 402 DVKTISVP 409 (479)
Q Consensus 402 ~~~~~~~~ 409 (479)
++++...+
T Consensus 238 ~~~~~~~~ 245 (308)
T 1qyc_A 238 TLEKAYVP 245 (308)
T ss_dssp CCEEEEEC
T ss_pred CCceEeCC
Confidence 87776655
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=211.30 Aligned_cols=232 Identities=16% Similarity=0.145 Sum_probs=168.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 10 ~l~~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~D~~ 72 (260)
T 3awd_A 10 RLDNRVAIVTGGAQNIGLACVTALAEAGARVIIADLDEAMA----------------TKAVEDLRM-EGHDVSSVVMDVT 72 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHH-TTCCEEEEECCTT
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCceEEEEecCC
Confidence 35689999999999999999999999999999999864321 111111111 1357899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccC-c-ccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRS-A-PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~-~-~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
|+++++++++.. ++|+||||||... . .....+.+++...+++|+.|+.++++++.. .+.+ +||++||.
T Consensus 73 ~~~~~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~ 151 (260)
T 3awd_A 73 NTESVQNAVRSVHEQEGRVDILVACAGICISEVKAEDMTDGQWLKQVDINLNGMFRSCQAVGRIMLEQKQG-VIVAIGSM 151 (260)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCC-EEEEEecc
Confidence 999998888643 6999999999754 2 122234456678899999999999998864 3555 99999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+... +..+...|+.+|++.|.+++.++.+ +|++++++|||.|+++......
T Consensus 152 ~~~~~~----------------------~~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~pg~v~t~~~~~~~-- 207 (260)
T 3awd_A 152 SGLIVN----------------------RPQQQAAYNASKAGVHQYIRSLAAEWAPHGIRANAVAPTYIETTLTRFGM-- 207 (260)
T ss_dssp GGTSCC----------------------SSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTHHHH--
T ss_pred hhcccC----------------------CCCCccccHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeeeeccchhhccc--
Confidence 544211 2223488999999999999999988 6899999999999998643100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
....+...+..+.+ ...+++++|+|++++.++..+.. .|+ +|++.++.
T Consensus 208 ---------------~~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~gg~ 257 (260)
T 3awd_A 208 ---------------EKPELYDAWIAGTP---------MGRVGQPDEVASVVQFLASDAASLMTGA--IVNVDAGF 257 (260)
T ss_dssp ---------------TCHHHHHHHHHTCT---------TSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTT
T ss_pred ---------------CChHHHHHHHhcCC---------cCCCCCHHHHHHHHHHHhCchhccCCCc--EEEECCce
Confidence 00122333333322 23578999999999999975433 455 99998864
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=211.59 Aligned_cols=226 Identities=15% Similarity=0.142 Sum_probs=169.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|++|||||+|+||.+++++|+++|++|+++++..... ..+..+.+.. .+.++.++.+|++|.
T Consensus 3 ~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~Dv~d~ 66 (246)
T 3osu_A 3 MTKSALVTGASRGIGRSIALQLAEEGYNVAVNYAGSKEK---------------AEAVVEEIKA-KGVDSFAIQANVADA 66 (246)
T ss_dssp CSCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH---------------HHHHHHHHHH-TTSCEEEEECCTTCH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHH---------------HHHHHHHHHh-cCCcEEEEEccCCCH
Confidence 578999999999999999999999999999988754321 1111112211 245788999999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccccc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEY 234 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~ 234 (479)
++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++ ++.+.+ +||++||...+
T Consensus 67 ~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~ 145 (246)
T 3osu_A 67 DEVKAMIKEVVSQFGSLDVLVNNAGITRDNLLMRMKEQEWDDVIDTNLKGVFNCIQKATPQMLRQRSG-AIINLSSVVGA 145 (246)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEEcchhhc
Confidence 9998888754 7999999999865432 23355677889999999999999998 455655 99999996544
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
. +..+...|+.||++.+.+++.++.++ |+++++++||.|.++....
T Consensus 146 ~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~------- 194 (246)
T 3osu_A 146 V------------------------GNPGQANYVATKAGVIGLTKSAARELASRGITVNAVAPGFIVSDMTDA------- 194 (246)
T ss_dssp H------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCCSC-------
T ss_pred C------------------------CCCCChHHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECCCcCCcccc-------
Confidence 2 12336899999999999999999864 8999999999999886432
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCC--CCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP--GEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~--g~~~~~ni~~~ 381 (479)
....+...+..+.+ ...+.+.+|+|++++.++..+... |+ +|++.++
T Consensus 195 ------------~~~~~~~~~~~~~p---------~~r~~~~~dva~~v~~l~s~~~~~itG~--~i~vdgG 243 (246)
T 3osu_A 195 ------------LSDELKEQMLTQIP---------LARFGQDTDIANTVAFLASDKAKYITGQ--TIHVNGG 243 (246)
T ss_dssp ------------SCHHHHHHHHTTCT---------TCSCBCHHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred ------------cCHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCccccCCCCC--EEEeCCC
Confidence 11233344433332 345788999999999998765443 55 9999875
|
| >2dkn_A 3-alpha-hydroxysteroid dehydrogenase; oxidoreductase, rossmann fold; HET: NAI; 1.80A {Pseudomonas SP} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-27 Score=222.12 Aligned_cols=237 Identities=13% Similarity=0.043 Sum_probs=160.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+||||||+||||++++++|+++|++|++++|..... . . .+.+|++|.+
T Consensus 1 Mk~vlVtGasg~iG~~l~~~L~~~g~~V~~~~r~~~~~-----------------------~----~---~~~~D~~~~~ 50 (255)
T 2dkn_A 1 MSVIAITGSASGIGAALKELLARAGHTVIGIDRGQADI-----------------------E----A---DLSTPGGRET 50 (255)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE-----------------------E----C---CTTSHHHHHH
T ss_pred CcEEEEeCCCcHHHHHHHHHHHhCCCEEEEEeCChhHc-----------------------c----c---cccCCcccHH
Confidence 46899999999999999999999999999999854310 0 0 1578999999
Q ss_pred HHHHHhhhc--CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeeccccccCCCC
Q 011707 166 FLSESFKSF--EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMGEYGTPNI 239 (479)
Q Consensus 166 ~~~~~~~~~--~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~v~g~~~~ 239 (479)
+++++++.. ++|+||||||.... ..++...+++|+.|+.++++++.+. +.+ +||++||..+|+....
T Consensus 51 ~~~~~~~~~~~~~d~vi~~Ag~~~~------~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~~~~~~ 123 (255)
T 2dkn_A 51 AVAAVLDRCGGVLDGLVCCAGVGVT------AANSGLVVAVNYFGVSALLDGLAEALSRGQQP-AAVIVGSIAATQPGAA 123 (255)
T ss_dssp HHHHHHHHHTTCCSEEEECCCCCTT------SSCHHHHHHHHTHHHHHHHHHHHHHHHTSSSC-EEEEECCGGGGSTTGG
T ss_pred HHHHHHHHcCCCccEEEECCCCCCc------chhHHHHHHHHhHHHHHHHHHHHHHhhhcCCc-eEEEEecccccccccc
Confidence 999988754 79999999997542 1224668899999999999988764 445 9999999888865421
Q ss_pred --CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 240 --DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 240 --~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
+..|.....++.........+..+.+.|+.+|++.|.+++.++++ .|++++++|||.|+|+...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~~~~~~----------- 192 (255)
T 2dkn_A 124 ELPMVEAMLAGDEARAIELAEQQGQTHLAYAGSKYAVTCLARRNVVDWAGRGVRLNVVAPGAVETPLLQ----------- 192 (255)
T ss_dssp GCHHHHHHHHTCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECCBCSHHHH-----------
T ss_pred ccchhhhhcccchhhhhhhccccCCcchhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEcCCcccchhhh-----------
Confidence 110100000000000000000124678999999999999998877 5899999999999998421
Q ss_pred cCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC--CCCCceEEEeCCC-CcCHH
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA--QPGEFRVFNQFTE-QFSVN 386 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~g~~~~~ni~~~-~~s~~ 386 (479)
.++.....+.....+. + ...++++++|+|++++.++..+. ..|+ +||++++ .++++
T Consensus 193 ------------~~~~~~~~~~~~~~~~-~-~~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~gg~~~~~~ 251 (255)
T 2dkn_A 193 ------------ASKADPRYGESTRRFV-A-PLGRGSEPREVAEAIAFLLGPQASFIHGS--VLFVDGGMDALMR 251 (255)
T ss_dssp ------------HHHHCTTTHHHHHSCC-C-TTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTHHHHHC
T ss_pred ------------hcccchhhHHHHHHHH-H-HhcCCCCHHHHHHHHHHHhCCCcccceee--EEEecCCeEeeee
Confidence 1100000000000000 1 34579999999999999998753 3455 9999985 34443
|
| >3v2h_A D-beta-hydroxybutyrate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 3.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-25 Score=213.66 Aligned_cols=238 Identities=11% Similarity=0.037 Sum_probs=168.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... ..+..+.+....+.++.++.+|++
T Consensus 22 ~l~~k~~lVTGas~GIG~~ia~~la~~G~~V~~~~r~~~~~---------------~~~~~~~~~~~~~~~~~~~~~Dv~ 86 (281)
T 3v2h_A 22 SMMTKTAVITGSTSGIGLAIARTLAKAGANIVLNGFGAPDE---------------IRTVTDEVAGLSSGTVLHHPADMT 86 (281)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEECCCCHHH---------------HHHHHHHHHTTCSSCEEEECCCTT
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHH---------------HHHHHHHHhhccCCcEEEEeCCCC
Confidence 46789999999999999999999999999999998743211 111222232333467899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~ 232 (479)
|.++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++ ++.+.+ +||++||..
T Consensus 87 d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~ 165 (281)
T 3v2h_A 87 KPSEIADMMAMVADRFGGADILVNNAGVQFVEKIEDFPVEQWDRIIAVNLSSSFHTIRGAIPPMKKKGWG-RIINIASAH 165 (281)
T ss_dssp CHHHHHHHHHHHHHHTSSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGG
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEECCcc
Confidence 999998888754 7999999999865433 23356678889999999999999987 444555 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.||++.+.+++.++.++ |+++++++||.|.++......
T Consensus 166 ~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~--- 218 (281)
T 3v2h_A 166 GLV------------------------ASPFKSAYVAAKHGIMGLTKTVALEVAESGVTVNSICPGYVLTPLVEKQI--- 218 (281)
T ss_dssp GTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------
T ss_pred ccc------------------------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEECCCCcCcchhhhc---
Confidence 442 22336899999999999999999885 899999999999988543210
Q ss_pred hhhcccCCCCcccchHHHHHH--HHhcCCC-eEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCV--QAAVGHP-LTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
..... ....... ...+.++.....+++++|+|++++.++..... .|+ ++++.++
T Consensus 219 ----------------~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~edvA~~v~~L~s~~a~~itG~--~i~vdGG 277 (281)
T 3v2h_A 219 ----------------PDQARTRGITEEQVINEVMLKGQPTKKFITVEQVASLALYLAGDDAAQITGT--HVSMDGG 277 (281)
T ss_dssp -------------------------------------CCTTCSCBCHHHHHHHHHHHHSSGGGGCCSC--EEEESTT
T ss_pred ----------------chhhhhcCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHHcCCCcCCCCCc--EEEECCC
Confidence 00000 0000000 11223345567899999999999999976543 455 9999875
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.3e-26 Score=218.82 Aligned_cols=248 Identities=17% Similarity=0.193 Sum_probs=181.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccC--CCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT--GKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~~D 160 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.... ..++.++.+|
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~~~D 71 (281)
T 3svt_A 8 SFQDRTYLVTGGGSGIGKGVAAGLVAAGASVMIVGRNPDKL----------------AGAVQELEALGANGGAIRYEPTD 71 (281)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHTTCCSSCEEEEEECC
T ss_pred CcCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHHhCCCCceEEEEeCC
Confidence 46789999999999999999999999999999999865421 11222222221 1278899999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEee
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLG 229 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~S 229 (479)
++|+++++++++.. ++|+||||||.... +....+.+++.+++++|+.|+.++++++... +.+ +||++|
T Consensus 72 v~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g-~iv~is 150 (281)
T 3svt_A 72 ITNEDETARAVDAVTAWHGRLHGVVHCAGGSENIGPITQVDSEAWRRTVDLNVNGTMYVLKHAAREMVRGGGG-SFVGIS 150 (281)
T ss_dssp TTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE-EEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEe
Confidence 99999998888754 79999999997332 2233455677889999999999999987543 334 999999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|...+. +..+...|+.||++.+.+++.++.++ |+++++++||.|+++......
T Consensus 151 S~~~~~------------------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~ 206 (281)
T 3svt_A 151 SIAASN------------------------THRWFGAYGVTKSAVDHLMQLAADELGASWVRVNSIRPGLIRTDLVAAIT 206 (281)
T ss_dssp CHHHHS------------------------CCTTCTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH
T ss_pred CHHHcC------------------------CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhhcc
Confidence 976553 22346899999999999999999886 599999999999887532100
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC-Cc
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE-QF 383 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~-~~ 383 (479)
....+...+.... ....+.+++|+|++++.++..... .|+ +|++.++ ..
T Consensus 207 -----------------~~~~~~~~~~~~~---------p~~r~~~~~dva~~~~~l~s~~~~~itG~--~~~vdgG~~~ 258 (281)
T 3svt_A 207 -----------------ESAELSSDYAMCT---------PLPRQGEVEDVANMAMFLLSDAASFVTGQ--VINVDGGQML 258 (281)
T ss_dssp -----------------TCHHHHHHHHHHC---------SSSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTGGG
T ss_pred -----------------cCHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCcccCCCCCC--EEEeCCChhc
Confidence 0011222222222 234567899999999999976544 355 9999875 44
Q ss_pred C-HHHHHHHHHHHhhhcCCc
Q 011707 384 S-VNQLAALVTKAGEKLGLD 402 (479)
Q Consensus 384 s-~~el~~~i~~~~~~~g~~ 402 (479)
+ ..++.+.+.+. +|.+
T Consensus 259 ~~~~~~~~~~~~~---~~~~ 275 (281)
T 3svt_A 259 RRGPDFSAMLEPV---FGRD 275 (281)
T ss_dssp SCCCCCHHHHHHH---HCTT
T ss_pred ccCCcchhccccc---cCCc
Confidence 4 67888888887 5554
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-25 Score=209.61 Aligned_cols=231 Identities=13% Similarity=0.080 Sum_probs=167.5
Q ss_pred CCCCcEEEEEcCCc-hhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDG-YCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG-~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.+++|+||||||+| +||.+++++|+++|++|++++|..... .+..+.+......++.++.+|+
T Consensus 19 ~l~~k~vlITGasg~GIG~~~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~Dl 82 (266)
T 3o38_A 19 LLKGKVVLVTAAAGTGIGSTTARRALLEGADVVISDYHERRL----------------GETRDQLADLGLGRVEAVVCDV 82 (266)
T ss_dssp TTTTCEEEESSCSSSSHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHTTCSSCEEEEECCT
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHCCCEEEEecCCHHHH----------------HHHHHHHHhcCCCceEEEEeCC
Confidence 46799999999997 699999999999999999999865421 1222233333346899999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc-----CCcceEEEeec
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF-----RQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-----g~~~~~V~~SS 230 (479)
+|.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++... +.+ +||++||
T Consensus 83 ~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~-~iv~~sS 161 (266)
T 3o38_A 83 TSTEAVDALITQTVEKAGRLDVLVNNAGLGGQTPVVDMTDEEWDRVLNVTLTSVMRATRAALRYFRGVDHGG-VIVNNAS 161 (266)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSCCE-EEEEECC
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCe-EEEEeCC
Confidence 9999998888754 7999999999765433 23356677889999999999999988654 334 8999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
...+. +..+...|+.+|++.+.+++.++.+ .|+++++++||.|..+.....
T Consensus 162 ~~~~~------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~-- 215 (266)
T 3o38_A 162 VLGWR------------------------AQHSQSHYAAAKAGVMALTRCSAIEAVEFGVRINAVSPSIARHKFLEKT-- 215 (266)
T ss_dssp GGGTC------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC--------
T ss_pred HHHcC------------------------CCCCCchHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCcccchhhhcc--
Confidence 65442 2234789999999999999999988 589999999999987743210
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
........+........+.+++|+|++++.++......-.++++++.++
T Consensus 216 -------------------------~~~~~~~~~~~~~~~~r~~~~~dva~~i~~l~s~~~~~~tG~~i~vdgG 264 (266)
T 3o38_A 216 -------------------------SSSELLDRLASDEAFGRAAEPWEVAATIAFLASDYSSYMTGEVVSVSSQ 264 (266)
T ss_dssp ------------------------------------CCTTSSCCCHHHHHHHHHHHHSGGGTTCCSCEEEESSC
T ss_pred -------------------------CcHHHHHHHHhcCCcCCCCCHHHHHHHHHHHcCccccCccCCEEEEcCC
Confidence 0001111112223445778999999999999976443222349999875
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-25 Score=211.33 Aligned_cols=240 Identities=15% Similarity=0.117 Sum_probs=168.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+....+.++.++.+|++
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~D~~ 67 (263)
T 3ai3_A 4 GISGKVAVITGSSSGIGLAIAEGFAKEGAHIVLVARQVDRL----------------HEAARSLKEKFGVRVLEVAVDVA 67 (263)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHHHCCCEEEEECCTT
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHH----------------HHHHHHHHHhcCCceEEEEcCCC
Confidence 35689999999999999999999999999999999864311 11111111111357889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++. +.+.+ +||++||..
T Consensus 68 ~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~ 146 (263)
T 3ai3_A 68 TPEGVDAVVESVRSSFGGADILVNNAGTGSNETIMEAADEKWQFYWELLVMAAVRLARGLVPGMRARGGG-AIIHNASIC 146 (263)
T ss_dssp SHHHHHHHHHHHHHHHSSCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECchh
Confidence 999998888743 7999999999764322 223555678899999999999998874 34555 999999977
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+.. ..+...|+.||++.+.+++.++.+ +|+++++++||.|++|..... ..
T Consensus 147 ~~~~------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~--~~ 200 (263)
T 3ai3_A 147 AVQP------------------------LWYEPIYNVTKAALMMFSKTLATEVIKDNIRVNCINPGLILTPDWIKT--AK 200 (263)
T ss_dssp GTSC------------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHH--HH
T ss_pred hcCC------------------------CCCcchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCcchhhh--hH
Confidence 6642 133678999999999999999988 589999999999999842110 00
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.+.... +. ....+...+.... .....+.+++|+|++++.++..+.. .|+ +|++.++
T Consensus 201 ~~~~~~---~~---~~~~~~~~~~~~~--------~p~~~~~~~~dvA~~~~~l~s~~~~~~~G~--~~~vdgG 258 (263)
T 3ai3_A 201 ELTKDN---GG---DWKGYLQSVADEH--------APIKRFASPEELANFFVFLCSERATYSVGS--AYFVDGG 258 (263)
T ss_dssp HHTTTT---TC---CHHHHHHHHHHHH--------CTTCSCBCHHHHHHHHHHHTSTTCTTCCSC--EEEESTT
T ss_pred hhhccc---CC---cHHHHHHHHHhcC--------CCCCCCcCHHHHHHHHHHHcCccccCCCCc--EEEECCC
Confidence 000000 00 0011112221110 1224689999999999999876543 354 9999885
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-25 Score=208.66 Aligned_cols=224 Identities=14% Similarity=0.077 Sum_probs=162.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|....... ..+ ..+.++.++.+|++
T Consensus 4 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~----------------~~~----~~~~~~~~~~~Dv~ 63 (257)
T 3tpc_A 4 QLKSRVFIVTGASSGLGAAVTRMLAQEGATVLGLDLKPPAGEE----------------PAA----ELGAAVRFRNADVT 63 (257)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSCC--------------------------------CEEEECCTT
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHHHH----------------HHH----HhCCceEEEEccCC
Confidence 3578999999999999999999999999999999986542111 011 11347889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccc-----cccccccchhhhhhHHHHHHHHHHHHHc----------CCc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYS-----MIDRSRAVFTQHNNVIGTLNVLFAMKEF----------RQE 222 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-----~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----------g~~ 222 (479)
|.++++++++.. ++|+||||||....... ..+.+++.+++++|+.|+.++++++... +.+
T Consensus 64 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~~~g 143 (257)
T 3tpc_A 64 NEADATAALAFAKQEFGHVHGLVNCAGTAPGEKILGRSGPHALDSFARTVAVNLIGTFNMIRLAAEVMSQGEPDADGERG 143 (257)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSCCE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccccCCCCCe
Confidence 999998888754 79999999997643221 2345667889999999999999998763 333
Q ss_pred ceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeec
Q 011707 223 CHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYG 299 (479)
Q Consensus 223 ~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~G 299 (479)
+||++||...+. +..+...|+.||++.+.+++.++.+ +|+++++++||.|.+
T Consensus 144 -~iv~isS~~~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t 198 (257)
T 3tpc_A 144 -VIVNTASIAAFD------------------------GQIGQAAYAASKGGVAALTLPAARELARFGIRVVTIAPGIFDT 198 (257)
T ss_dssp -EEEEECCTHHHH------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSC
T ss_pred -EEEEEechhhcc------------------------CCCCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEeCCCCC
Confidence 899999966542 2234689999999999999999988 589999999999998
Q ss_pred CCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCce-eccccHHHHHHHHHHHHhCCCCCCCceEEEe
Q 011707 300 VRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQT-RGYLDIRDTVQCVELAIANPAQPGEFRVFNQ 378 (479)
Q Consensus 300 p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni 378 (479)
+.... .......... ..... ..+.+++|+|++++.++......|+ ++++
T Consensus 199 ~~~~~-------------------~~~~~~~~~~---------~~~p~~~r~~~~~dva~~v~~l~s~~~itG~--~i~v 248 (257)
T 3tpc_A 199 PMMAG-------------------MPQDVQDALA---------ASVPFPPRLGRAEEYAALVKHICENTMLNGE--VIRL 248 (257)
T ss_dssp C------------------------------------------CCSSSSCSCBCHHHHHHHHHHHHHCTTCCSC--EEEE
T ss_pred hhhcc-------------------CCHHHHHHHH---------hcCCCCCCCCCHHHHHHHHHHHcccCCcCCc--EEEE
Confidence 75321 0011111111 11222 4678999999999999987555666 9999
Q ss_pred CCC
Q 011707 379 FTE 381 (479)
Q Consensus 379 ~~~ 381 (479)
.++
T Consensus 249 dGG 251 (257)
T 3tpc_A 249 DGA 251 (257)
T ss_dssp STT
T ss_pred CCC
Confidence 875
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-25 Score=206.25 Aligned_cols=228 Identities=14% Similarity=0.067 Sum_probs=166.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+....+.++.++.+|++|++
T Consensus 2 ~k~vlItGasggiG~~~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~D~~~~~ 65 (250)
T 2cfc_A 2 SRVAIVTGASSGNGLAIATRFLARGDRVAALDLSAETL----------------EETARTHWHAYADKVLRVRADVADEG 65 (250)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHSTTTGGGEEEEECCTTCHH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHHhcCCcEEEEEecCCCHH
Confidence 68999999999999999999999999999999864321 11111110111346889999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCccc----ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPY----SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~----~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
+++++++.. ++|+||||||...... ...+.+++...+++|+.|+.++++++. +.+.+ +||++||..
T Consensus 66 ~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~-~iv~isS~~ 144 (250)
T 2cfc_A 66 DVNAAIAATMEQFGAIDVLVNNAGITGNSEAGVLHTTPVEQFDKVMAVNVRGIFLGCRAVLPHMLLQGAG-VIVNIASVA 144 (250)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCTTCCSGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGG
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCCcchhhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC-EEEEECChh
Confidence 998888643 7999999999754322 223455678889999999988877664 34555 999999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+.. ..+...|+.+|++.+.+++.++.++ |++++++|||.|+++......
T Consensus 145 ~~~~------------------------~~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~~~--- 197 (250)
T 2cfc_A 145 SLVA------------------------FPGRSAYTTSKGAVLQLTKSVAVDYAGSGIRCNAVCPGMIETPMTQWRL--- 197 (250)
T ss_dssp GTSC------------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTTHHHH---
T ss_pred hccC------------------------CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCccCcccccc---
Confidence 5532 2336899999999999999999886 899999999999998643100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
. ...+...+..+.+ ...+.+++|+|++++.++..+.. .|+ ++++.++.
T Consensus 198 ------------~--~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~gG~ 247 (250)
T 2cfc_A 198 ------------D--QPELRDQVLARIP---------QKEIGTAAQVADAVMFLAGEDATYVNGA--ALVMDGAY 247 (250)
T ss_dssp ------------T--SHHHHHHHHTTCT---------TCSCBCHHHHHHHHHHHHSTTCTTCCSC--EEEESTTG
T ss_pred ------------C--CHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHcCchhhcccCC--EEEECCce
Confidence 0 0122233333222 23578999999999999986544 355 99998753
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.94 E-value=6.3e-25 Score=209.50 Aligned_cols=227 Identities=15% Similarity=0.055 Sum_probs=170.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+ +.++.++.+|++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~----~~~~~~~~~Dv~ 67 (271)
T 3tzq_B 8 ELENKVAIITGACGGIGLETSRVLARAGARVVLADLPETDL----------------AGAAASV----GRGAVHHVVDLT 67 (271)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSCH----------------HHHHHHH----CTTCEEEECCTT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEcCCHHHH----------------HHHHHHh----CCCeEEEECCCC
Confidence 46789999999999999999999999999999999864321 1111111 457889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc---ccccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeec
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA---PYSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~---~~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS 230 (479)
|.++++++++.. ++|+||||||.... .....+.+++..++++|+.|+.++++++ ++.+.+ +||++||
T Consensus 68 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iv~isS 146 (271)
T 3tzq_B 68 NEVSVRALIDFTIDTFGRLDIVDNNAAHSDPADMLVTQMTVDVWDDTFTVNARGTMLMCKYAIPRLISAGGG-AIVNISS 146 (271)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCTTCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE-EEEEECC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEECC
Confidence 999998888754 79999999997632 1223456677889999999999999998 555655 9999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
...+. +..+...|+.||++.+.+++.++.+ +|+++++++||.|++|......
T Consensus 147 ~~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~- 201 (271)
T 3tzq_B 147 ATAHA------------------------AYDMSTAYACTKAAIETLTRYVATQYGRHGVRCNAIAPGLVRTPRLEVGL- 201 (271)
T ss_dssp GGGTS------------------------BCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTTC----
T ss_pred HHHcC------------------------CCCCChHHHHHHHHHHHHHHHHHHHHhhcCEEEEEEEeCCCcCccccccC-
Confidence 76552 2234689999999999999999998 5899999999999998643110
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
...+...+.... ....+.+++|+|++++.++......-.++++++.++
T Consensus 202 -----------------~~~~~~~~~~~~---------~~~r~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 249 (271)
T 3tzq_B 202 -----------------PQPIVDIFATHH---------LAGRIGEPHEIAELVCFLASDRAAFITGQVIAADSG 249 (271)
T ss_dssp -----------------CHHHHHHHHTTS---------TTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -----------------CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccCCcCCCEEEECCC
Confidence 112222222222 223567899999999999976544222239999886
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=212.30 Aligned_cols=229 Identities=14% Similarity=0.086 Sum_probs=153.4
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..+++|+||||||+|+||++++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|+
T Consensus 10 ~~l~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~ 72 (266)
T 1xq1_A 10 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYEL----------------NECLSKWQK-KGFQVTGSVCDA 72 (266)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHH-TTCCEEEEECCT
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCeeEEEECCC
Confidence 346789999999999999999999999999999998864321 111112211 134688999999
Q ss_pred CChHHHHHHhhh------cCCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeec
Q 011707 162 CDFEFLSESFKS------FEPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~------~~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS 230 (479)
+|.++++++++. .++|+||||||...... ...+.+++...+++|+.|+.++++++ ++.+.+ +||++||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~isS 151 (266)
T 1xq1_A 73 SLRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCG-NIIFMSS 151 (266)
T ss_dssp TSHHHHHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-EEEEEC-
T ss_pred CCHHHHHHHHHHHHHHhCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcc
Confidence 999998888753 37999999999754322 22345567788999999999999988 455666 9999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
...+.. ..+...|+.+|++.+.+++.++.++ |++++++|||.++++.....
T Consensus 152 ~~~~~~------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-- 205 (266)
T 1xq1_A 152 IAGVVS------------------------ASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV-- 205 (266)
T ss_dssp ---------------------------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC---------
T ss_pred chhccC------------------------CCCCchHHHHHHHHHHHHHHHHHHHhHhCcEEEEEeeCCCccchhhhh--
Confidence 765531 1236789999999999999999885 89999999999999864210
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
....+...+... .....+++++|+|++++.++..+.. .|+ ++++.++
T Consensus 206 ----------------~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~gG 254 (266)
T 1xq1_A 206 ----------------YDDEFKKVVISR---------KPLGRFGEPEEVSSLVAFLCMPAASYITGQ--TICVDGG 254 (266)
T ss_dssp -------------------------------------------CCGGGGHHHHHHHTSGGGTTCCSC--EEECCCC
T ss_pred ----------------cCHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCccccCccCc--EEEEcCC
Confidence 000111111111 1123578999999999999875432 355 9999875
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=208.37 Aligned_cols=225 Identities=15% Similarity=0.086 Sum_probs=165.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+. . .++.++.+|++
T Consensus 4 ~l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~---~--~~~~~~~~D~~ 62 (244)
T 3d3w_A 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQADL----------------DSLVRE---C--PGIEPVCVDLG 62 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHH---S--TTCEEEECCTT
T ss_pred ccCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHH---c--CCCCEEEEeCC
Confidence 35689999999999999999999999999999998854311 011111 1 24677899999
Q ss_pred ChHHHHHHhhhc-CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----C-CcceEEEeecccccc
Q 011707 163 DFEFLSESFKSF-EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----R-QECHLVKLGTMGEYG 235 (479)
Q Consensus 163 d~~~~~~~~~~~-~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g-~~~~~V~~SS~~v~g 235 (479)
|+++++++++.. ++|+||||||...... ...+.+++...+++|+.++.++++++... + .+ +||++||...+.
T Consensus 63 ~~~~~~~~~~~~~~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~-~iv~~sS~~~~~ 141 (244)
T 3d3w_A 63 DWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPG-AIVNVSSQCSQR 141 (244)
T ss_dssp CHHHHHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE-EEEEECCGGGTS
T ss_pred CHHHHHHHHHHcCCCCEEEECCccCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCc-EEEEeCchhhcc
Confidence 999999999754 5899999999765332 22244567788999999999999888653 4 44 999999976553
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
+..+...|+.||++.|.+++.++.+ .|++++++|||.|+++......
T Consensus 142 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~~~------ 191 (244)
T 3d3w_A 142 ------------------------AVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQATW------ 191 (244)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTTTHHHHS------
T ss_pred ------------------------CCCCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccccccchhhhc------
Confidence 2234689999999999999999887 4899999999999998532100
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC--CCCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA--QPGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~g~~~~~ni~~~ 381 (479)
. . ..+...+..+. ....+++++|+|++++.++.... ..|+ +|++.++
T Consensus 192 ---~-----~---~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~gG 240 (244)
T 3d3w_A 192 ---S-----D---PHKAKTMLNRI---------PLGKFAEVEHVVNAILFLLSDRSGMTTGS--TLPVEGG 240 (244)
T ss_dssp ---C-----S---TTHHHHHHHTC---------TTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ---c-----C---hHHHHHHHhhC---------CCCCCcCHHHHHHHHHHHcCccccCCCCC--EEEECCC
Confidence 0 0 01112222221 23478999999999999997643 2455 9999875
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=211.65 Aligned_cols=229 Identities=11% Similarity=0.041 Sum_probs=170.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~Dv~ 71 (256)
T 3gaf_A 9 HLNDAVAIVTGAAAGIGRAIAGTFAKAGASVVVTDLKSEGA----------------EAVAAAIRQ-AGGKAIGLECNVT 71 (256)
T ss_dssp CCTTCEEEECSCSSHHHHHHHHHHHHHTCEEEEEESSHHHH----------------HHHHHHHHH-TTCCEEEEECCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEECCCC
Confidence 46789999999999999999999999999999999865321 111112211 2457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
|.++++++++.. ++|+||||||.........+++++..++++|+.|+.++++++. +.+.+ +||++||...
T Consensus 72 d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~ 150 (256)
T 3gaf_A 72 DEQHREAVIKAALDQFGKITVLVNNAGGGGPKPFDMPMSDFEWAFKLNLFSLFRLSQLAAPHMQKAGGG-AILNISSMAG 150 (256)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCGGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEcCHHH
Confidence 999988887754 7999999999865433344666788899999999999999874 34445 9999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +..+...|+.||++.+.+++.++.++ |+++++++||.|..+....
T Consensus 151 ~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~------ 200 (256)
T 3gaf_A 151 EN------------------------TNVRMASYGSSKAAVNHLTRNIAFDVGPMGIRVNAIAPGAIKTDALAT------ 200 (256)
T ss_dssp TC------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHH------
T ss_pred cC------------------------CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEEccccCchhhh------
Confidence 42 22346899999999999999999885 8999999999998763110
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
. ........+... .....+.+++|+|++++.++..... .|+ ++++.++.
T Consensus 201 ~------------~~~~~~~~~~~~---------~p~~r~~~~~dva~~~~~L~s~~~~~itG~--~i~vdgG~ 251 (256)
T 3gaf_A 201 V------------LTPEIERAMLKH---------TPLGRLGEAQDIANAALFLCSPAAAWISGQ--VLTVSGGG 251 (256)
T ss_dssp H------------CCHHHHHHHHTT---------CTTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTS
T ss_pred c------------cCHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCCcccCccCC--EEEECCCc
Confidence 0 001222222222 2234678999999999999975443 455 99998853
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=213.83 Aligned_cols=232 Identities=15% Similarity=0.120 Sum_probs=171.2
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..+++|+||||||+|+||.+++++|+++|++|++++|..... .+.........+.++.++.+|+
T Consensus 43 ~~l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~Dv 106 (291)
T 3ijr_A 43 EKLKGKNVLITGGDSGIGRAVSIAFAKEGANIAIAYLDEEGD----------------ANETKQYVEKEGVKCVLLPGDL 106 (291)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH----------------HHHHHHHHHTTTCCEEEEESCT
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH----------------HHHHHHHHHhcCCcEEEEECCC
Confidence 356899999999999999999999999999999999864321 1111111122346789999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeecccc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGE 233 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v 233 (479)
+|+++++++++.. ++|+||||||..... ....+.+++.+++++|+.|+.++++++...- ...+||++||...
T Consensus 107 ~d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~~~ 186 (291)
T 3ijr_A 107 SDEQHCKDIVQETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASIVA 186 (291)
T ss_dssp TSHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCTHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEechHh
Confidence 9999988887754 799999999976432 2233566788899999999999999997642 1238999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+.. ......|+.||++.+.+++.++.++ |+++++++||.|+++.....
T Consensus 187 ~~~------------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~----- 237 (291)
T 3ijr_A 187 YEG------------------------NETLIDYSATKGAIVAFTRSLSQSLVQKGIRVNGVAPGPIWTPLIPSS----- 237 (291)
T ss_dssp HHC------------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTHHHHH-----
T ss_pred cCC------------------------CCCChhHHHHHHHHHHHHHHHHHHHhhcCEEEEEEeeCCCcCCccccc-----
Confidence 532 2236889999999999999999886 89999999999998742100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
.-....... ........+.+++|+|++++.++..... .|+ ++++.++.
T Consensus 238 -------------~~~~~~~~~---------~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~--~i~vdGG~ 287 (291)
T 3ijr_A 238 -------------FDEKKVSQF---------GSNVPMQRPGQPYELAPAYVYLASSDSSYVTGQ--MIHVNGGV 287 (291)
T ss_dssp -------------SCHHHHHHT---------TTTSTTSSCBCGGGTHHHHHHHHSGGGTTCCSC--EEEESSSC
T ss_pred -------------CCHHHHHHH---------HccCCCCCCcCHHHHHHHHHHHhCCccCCCcCC--EEEECCCc
Confidence 001111111 1223345678999999999999976543 455 99998753
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.7e-25 Score=209.27 Aligned_cols=229 Identities=14% Similarity=0.040 Sum_probs=171.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|.... +.+..+.+......++.++.+|++
T Consensus 7 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----------------~~~~~~~l~~~~~~~~~~~~~Dv~ 70 (262)
T 3pk0_A 7 DLQGRSVVVTGGTKGIGRGIATVFARAGANVAVAGRSTAD----------------IDACVADLDQLGSGKVIGVQTDVS 70 (262)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHTTSSSCEEEEECCTT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHH----------------HHHHHHHHHhhCCCcEEEEEcCCC
Confidence 4678999999999999999999999999999999986542 112222333332357899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++... +.+ +||++||..
T Consensus 71 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g-~iv~isS~~ 149 (262)
T 3pk0_A 71 DRAQCDALAGRAVEEFGGIDVVCANAGVFPDAPLATMTPEQLNGIFAVNVNGTFYAVQACLDALIASGSG-RVVLTSSIT 149 (262)
T ss_dssp SHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHSSC-EEEEECCSB
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEechh
Confidence 999998887654 7999999999765432 33366678889999999999999988654 555 999999964
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.... +..+...|+.||++.+.+++.++.+ +|+++++++||.|+++....
T Consensus 150 ~~~~-----------------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~----- 201 (262)
T 3pk0_A 150 GPIT-----------------------GYPGWSHYGATKAAQLGFMRTAAIELAPHKITVNAIMPGNIMTEGLLE----- 201 (262)
T ss_dssp TTTB-----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHT-----
T ss_pred hccC-----------------------CCCCChhhHHHHHHHHHHHHHHHHHHHhhCcEEEEEEeCcCcCccccc-----
Confidence 3200 1233689999999999999999998 58999999999998874211
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
....+........+ ...+.+++|+|++++.++..... .|+ ++++.++
T Consensus 202 --------------~~~~~~~~~~~~~p---------~~r~~~p~dva~~v~~L~s~~~~~itG~--~i~vdGG 250 (262)
T 3pk0_A 202 --------------NGEEYIASMARSIP---------AGALGTPEDIGHLAAFLATKEAGYITGQ--AIAVDGG 250 (262)
T ss_dssp --------------TCHHHHHHHHTTST---------TSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred --------------cCHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCccccCCcCC--EEEECCC
Confidence 01223333333322 23468899999999999976543 455 9999875
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-25 Score=212.64 Aligned_cols=229 Identities=15% Similarity=0.067 Sum_probs=170.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+......++.++.+|++
T Consensus 38 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~Dv~ 101 (293)
T 3rih_A 38 DLSARSVLVTGGTKGIGRGIATVFARAGANVAVAARSPREL----------------SSVTAELGELGAGNVIGVRLDVS 101 (293)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSGGGG----------------HHHHHHHTTSSSSCEEEEECCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHhhCCCcEEEEEEeCC
Confidence 46789999999999999999999999999999999865421 12222333222257899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+++++..++++|+.|+.++++++ ++.+.+ +||++||..
T Consensus 102 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iV~isS~~ 180 (293)
T 3rih_A 102 DPGSCADAARTVVDAFGALDVVCANAGIFPEARLDTMTPEQLSEVLDVNVKGTVYTVQACLAPLTASGRG-RVILTSSIT 180 (293)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHSSC-EEEEECCSB
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEEeChh
Confidence 999988887654 7999999999865432 23366678889999999999999988 355555 999999964
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+.. +..+...|+.||++.+.+++.++.++ |+++++++||.|+++....
T Consensus 181 ~~~~-----------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~----- 232 (293)
T 3rih_A 181 GPVT-----------------------GYPGWSHYGASKAAQLGFMRTAAIELAPRGVTVNAILPGNILTEGLVD----- 232 (293)
T ss_dssp TTTB-----------------------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHH-----
T ss_pred hccC-----------------------CCCCCHHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEecCCCcCcchhh-----
Confidence 3200 11236899999999999999999884 8999999999999874210
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
....+...+....+ ...+...+|++++++.++..... .|+ ++++.++
T Consensus 233 --------------~~~~~~~~~~~~~p---------~~r~~~p~dvA~~v~fL~s~~a~~itG~--~i~vdGG 281 (293)
T 3rih_A 233 --------------MGEEYISGMARSIP---------MGMLGSPVDIGHLAAFLATDEAGYITGQ--AIVVDGG 281 (293)
T ss_dssp --------------TCHHHHHHHHTTST---------TSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred --------------ccHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHhCccccCCCCC--EEEECCC
Confidence 11223333333322 23456899999999999975443 455 9999875
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-26 Score=221.00 Aligned_cols=245 Identities=13% Similarity=0.083 Sum_probs=175.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+....+.++.++.+|++
T Consensus 23 ~l~~k~vlITGasggiG~~la~~L~~~G~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~Dl~ 86 (302)
T 1w6u_A 23 SFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVL----------------KATAEQISSQTGNKVHAIQCDVR 86 (302)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHHHSSCEEEEECCTT
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHHhcCCceEEEEeCCC
Confidence 46789999999999999999999999999999999864321 11111221111357899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc-----CCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF-----RQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-----g~~~~~V~~SS~ 231 (479)
|.++++++++.. ++|+||||||...... ...+.+++...+++|+.|+.++++++... +.+ +||++||.
T Consensus 87 ~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~-~iv~isS~ 165 (302)
T 1w6u_A 87 DPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGA-AFLSITTI 165 (302)
T ss_dssp CHHHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCE-EEEEECCT
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCC-EEEEEccc
Confidence 999998888754 6899999999754322 22345567788999999999998888542 334 99999997
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+.. ..+...|+.||++.|.+++.++.+ +|++++++|||.|+++......
T Consensus 166 ~~~~~------------------------~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~~-- 219 (302)
T 1w6u_A 166 YAETG------------------------SGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSRL-- 219 (302)
T ss_dssp HHHHC------------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC------C--
T ss_pred ccccC------------------------CCCcchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeccCCCcchhhhc--
Confidence 65531 234678999999999999999988 6899999999999987421100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC-CcCH
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE-QFSV 385 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~-~~s~ 385 (479)
. ... .....+..+.+ ...+.+++|+|++++.++..... .|+ +|++.++ .+++
T Consensus 220 -------~-----~~~--~~~~~~~~~~p---------~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~gg~~~~~ 274 (302)
T 1w6u_A 220 -------D-----PTG--TFEKEMIGRIP---------CGRLGTVEELANLAAFLCSDYASWINGA--VIKFDGGEEVLI 274 (302)
T ss_dssp -------C-----TTS--HHHHHHHTTCT---------TSSCBCHHHHHHHHHHHTSGGGTTCCSC--EEEESTTHHHHH
T ss_pred -------c-----cch--hhHHHHHhcCC---------cCCCCCHHHHHHHHHHHcCCcccccCCC--EEEECCCeeecc
Confidence 0 000 11122222222 23578999999999999875433 455 9999985 5777
Q ss_pred HHHHHHHHHH
Q 011707 386 NQLAALVTKA 395 (479)
Q Consensus 386 ~el~~~i~~~ 395 (479)
.|+++.+.+.
T Consensus 275 ~~~~~~~~~~ 284 (302)
T 1w6u_A 275 SGEFNDLRKV 284 (302)
T ss_dssp HSTTGGGGGC
T ss_pred CCccccchhh
Confidence 8887777665
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-25 Score=211.00 Aligned_cols=250 Identities=14% Similarity=0.082 Sum_probs=172.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|........... ......+.+..+.+. ..+.++.++.+|++
T Consensus 12 ~l~gk~~lVTGas~gIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~ 87 (280)
T 3pgx_A 12 SLQGRVAFITGAARGQGRSHAVRLAAEGADIIACDICAPVSASVTYA---PASPEDLDETARLVE-DQGRKALTRVLDVR 87 (280)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSC---CCCHHHHHHHHHHHH-TTTCCEEEEECCTT
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecccccccccccc---ccCHHHHHHHHHHHH-hcCCeEEEEEcCCC
Confidence 46789999999999999999999999999999999843211000000 000011111122222 22467889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++.. .+.+.+||++||..
T Consensus 88 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~ 167 (280)
T 3pgx_A 88 DDAALRELVADGMEQFGRLDVVVANAGVLSWGRVWELTDEQWDTVIGVNLTGTWRTLRATVPAMIEAGNGGSIVVVSSSA 167 (280)
T ss_dssp CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCCEEEEEcchh
Confidence 999998888753 7999999999865433 2335667888999999999999998843 33223899999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.||++.+.+++.++.+ +|+++++++||.|+++...+..
T Consensus 168 ~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~--- 220 (280)
T 3pgx_A 168 GLK------------------------ATPGNGHYSASKHGLTALTNTLAIELGEYGIRVNSIHPYSVETPMIEPEA--- 220 (280)
T ss_dssp GTS------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCHHH---
T ss_pred hcc------------------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccCcccchhh---
Confidence 542 2234689999999999999999988 5899999999999998754311
Q ss_pred hhhcccCCCCcccchHHHHHHHH-hcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQA-AVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
....+... .....+... ..... .+++++|+|++++.++..... .|+ ++++.++.
T Consensus 221 ---------------~~~~~~~~~~~~~~~~~~-~~~~~-r~~~p~dvA~~v~~L~s~~~~~itG~--~i~vdGG~ 277 (280)
T 3pgx_A 221 ---------------MMEIFARHPSFVHSFPPM-PVQPN-GFMTADEVADVVAWLAGDGSGTLTGT--QIPVDKGA 277 (280)
T ss_dssp ---------------HHHHHHHCGGGGGGSCCB-TTBCS-SCBCHHHHHHHHHHHHSGGGTTCSSC--EEEESTTG
T ss_pred ---------------hhhhhhcCchhhhhhhhc-ccCCC-CCCCHHHHHHHHHHHhCccccCCCCC--EEEECCCc
Confidence 11111110 000111111 11222 489999999999999976543 355 99998764
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-25 Score=213.70 Aligned_cols=239 Identities=13% Similarity=0.100 Sum_probs=166.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 19 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~Dv~ 81 (277)
T 2rhc_B 19 TQDSEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEGL----------------RTTLKELRE-AGVEADGRTCDVR 81 (277)
T ss_dssp CTTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHH-TTCCEEEEECCTT
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCceEEEECCCC
Confidence 35789999999999999999999999999999999864321 111112211 1356889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc------CCcceEEEeec
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF------RQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~------g~~~~~V~~SS 230 (479)
|+++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++... +.+ +||++||
T Consensus 82 ~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~m~~~~~g-~iv~isS 160 (277)
T 2rhc_B 82 SVPEIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTG-RIVNIAS 160 (277)
T ss_dssp CHHHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTCHHHHTEE-EEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhChhhHhhcCCe-EEEEECc
Confidence 999988887643 6999999999764322 23355567889999999999999987654 444 9999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
...+. +..+...|+.+|++.+.+++.++.++ |+++++++||.|+++......
T Consensus 161 ~~~~~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~- 215 (277)
T 2rhc_B 161 TGGKQ------------------------GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVR- 215 (277)
T ss_dssp GGGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEEECSBCSHHHHHHH-
T ss_pred ccccc------------------------CCCCCccHHHHHHHHHHHHHHHHHHHHHhCcEEEEEecCcCcCchhhhhh-
Confidence 65432 12336789999999999999999885 799999999999887321000
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
...... ............... .....+++++|+|++++.++..+.. .|+ ++++.++.
T Consensus 216 -~~~~~~------~~~~~~~~~~~~~~~---------~p~~r~~~~~dvA~~v~~l~s~~~~~~tG~--~~~vdGG~ 274 (277)
T 2rhc_B 216 -EHYSDI------WEVSTEEAFDRITAR---------VPIGRYVQPSEVAEMVAYLIGPGAAAVTAQ--ALNVCGGL 274 (277)
T ss_dssp -HHHHHH------HTCCHHHHHHHHHHH---------STTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTC
T ss_pred -hhcccc------cccchHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCchhcCCCCc--EEEECCCc
Confidence 000000 000000111111111 1234689999999999999976533 454 99998753
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=211.00 Aligned_cols=232 Identities=13% Similarity=0.092 Sum_probs=166.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||++++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 6 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~ 68 (260)
T 2ae2_A 6 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKEL----------------NDCLTQWRS-KGFKVEASVCDLS 68 (260)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHH-TTCEEEEEECCTT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEEcCCC
Confidence 45789999999999999999999999999999999864321 111122211 1357889999999
Q ss_pred ChHHHHHHhhh------cCCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc
Q 011707 163 DFEFLSESFKS------FEPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~------~~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~ 231 (479)
|+++++++++. .++|+||||||...... ...+.+++..++++|+.|+.++++++. +.+.+ +||++||.
T Consensus 69 ~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~ 147 (260)
T 2ae2_A 69 SRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERG-NVVFISSV 147 (260)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSE-EEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcch
Confidence 99998888753 27999999999764322 233556678899999999999999884 44555 99999997
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +..+...|+.||++.+.+++.++.++ |+++++++||.+.++....
T Consensus 148 ~~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---- 199 (260)
T 2ae2_A 148 SGAL------------------------AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEM---- 199 (260)
T ss_dssp GGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHH----
T ss_pred hhcc------------------------CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCCCCCcchhh----
Confidence 6542 12336789999999999999999885 8999999999998763110
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
... .......+...... .....+.+++|+|++++.++..+.. .|+ ++++.++
T Consensus 200 --~~~--------~~~~~~~~~~~~~~---------~~~~~~~~~~dvA~~v~~l~s~~~~~~tG~--~~~vdgG 253 (260)
T 2ae2_A 200 --TIQ--------DPEQKENLNKLIDR---------CALRRMGEPKELAAMVAFLCFPAASYVTGQ--IIYVDGG 253 (260)
T ss_dssp --HTT--------SHHHHHHHHHHHHT---------STTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred --hcc--------ChhhHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCccccCCCCC--EEEECCC
Confidence 000 00000111122221 1234688999999999999875433 455 9999875
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-25 Score=211.92 Aligned_cols=249 Identities=14% Similarity=0.105 Sum_probs=163.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhc--ccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK--SLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~Dl 161 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+. ...+.++.++.+|+
T Consensus 4 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~D~ 67 (278)
T 1spx_A 4 FAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERL----------------EETRQQILAAGVSEQNVNSVVADV 67 (278)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHTTCCGGGEEEEECCT
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHhcccCCCceeEEeccc
Confidence 4689999999999999999999999999999999864321 11111110 11124688999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccc----cccccchhhhhhHHHHHHHHHHHHHc----CCcceEEE
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMI----DRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVK 227 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~----~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~ 227 (479)
+|+++++++++.. ++|+||||||...... ... +.+++..++++|+.|+.++++++... + + +||+
T Consensus 68 ~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~-g-~iv~ 145 (278)
T 1spx_A 68 TTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTK-G-EIVN 145 (278)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C-EEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-C-eEEE
Confidence 9999998888743 7999999999754321 112 45567888999999999999988654 5 4 9999
Q ss_pred eecccc-ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCC
Q 011707 228 LGTMGE-YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTD 303 (479)
Q Consensus 228 ~SS~~v-~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~ 303 (479)
+||... +. +..+...|+.||++.+.+++.++.+ +|+++++++||.|+++...
T Consensus 146 isS~~~~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~ 201 (278)
T 1spx_A 146 ISSIASGLH------------------------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGS 201 (278)
T ss_dssp ECCTTSSSS------------------------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--
T ss_pred Eeccccccc------------------------CCCCccHHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccCcccc
Confidence 999754 32 1233678999999999999999887 4899999999999988532
Q ss_pred chhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC---CCCCceEEEeCC
Q 011707 304 ETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA---QPGEFRVFNQFT 380 (479)
Q Consensus 304 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~---~~g~~~~~ni~~ 380 (479)
.... ....... +......+....+ ...+.+++|+|++++.++..+. ..|+ +|++.+
T Consensus 202 ~~~~---------~~~~~~~-~~~~~~~~~~~~p---------~~~~~~~~dvA~~v~~l~s~~~~~~~tG~--~~~vdg 260 (278)
T 1spx_A 202 AMGM---------PEETSKK-FYSTMATMKECVP---------AGVMGQPQDIAEVIAFLADRKTSSYIIGH--QLVVDG 260 (278)
T ss_dssp ----------------------HHHHHHHHHHCT---------TSSCBCHHHHHHHHHHHHCHHHHTTCCSC--EEEEST
T ss_pred cccc---------Cchhhhh-hhHHHHHHHhcCC---------CcCCCCHHHHHHHHHHHcCccccCcccCc--EEEECC
Confidence 1100 0000000 0001112211111 2357899999999999987543 3465 999998
Q ss_pred C-CcCHHHHHHHHHHH
Q 011707 381 E-QFSVNQLAALVTKA 395 (479)
Q Consensus 381 ~-~~s~~el~~~i~~~ 395 (479)
+ .+++.|+++.+.+.
T Consensus 261 G~~~~~~~~~~~~~~~ 276 (278)
T 1spx_A 261 GSSLIMGLHCQDFAKL 276 (278)
T ss_dssp TGGGC-----------
T ss_pred CcccccCcccccHHHH
Confidence 5 69999999998875
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-25 Score=207.01 Aligned_cols=229 Identities=15% Similarity=0.084 Sum_probs=165.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCce-eEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNI-ELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~v~~Dl 161 (479)
.+++|+||||||+|+||++++++|+++|++|++++|..... .+..+.+ +.++ .++.+|+
T Consensus 8 ~~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~----~~~~~~~~~~D~ 67 (254)
T 2wsb_A 8 RLDGACAAVTGAGSGIGLEICRAFAASGARLILIDREAAAL----------------DRAAQEL----GAAVAARIVADV 67 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHH----GGGEEEEEECCT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHh----cccceeEEEEec
Confidence 45789999999999999999999999999999999864311 1111111 2355 8899999
Q ss_pred CChHHHHHHhhh----cCCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 162 CDFEFLSESFKS----FEPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 162 ~d~~~~~~~~~~----~~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
+|.++++++++. .++|+||||||....... ..+.+++...+++|+.|+.++++++. +.+.+ +||++||..
T Consensus 68 ~~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~isS~~ 146 (254)
T 2wsb_A 68 TDAEAMTAAAAEAEAVAPVSILVNSAGIARLHDALETDDATWRQVMAVNVDGMFWASRAFGRAMVARGAG-AIVNLGSMS 146 (254)
T ss_dssp TCHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGG
T ss_pred CCHHHHHHHHHHHHhhCCCcEEEECCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEecch
Confidence 999999888754 279999999997654322 22445667889999999888877663 44555 999999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+... +..+...|+.+|++.|.+++.++.++ |++++++|||.++++......
T Consensus 147 ~~~~~----------------------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~Pg~v~t~~~~~~~--- 201 (254)
T 2wsb_A 147 GTIVN----------------------RPQFASSYMASKGAVHQLTRALAAEWAGRGVRVNALAPGYVATEMTLKMR--- 201 (254)
T ss_dssp GTSCC----------------------SSSCBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHHHH---
T ss_pred hccCC----------------------CCCcchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecccCchhhhccc---
Confidence 55321 22335899999999999999999886 899999999999987421100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
. ...+...+....+ ...+++++|+|++++.++..+.. .|+ ++++.++.
T Consensus 202 ------------~--~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~gG~ 251 (254)
T 2wsb_A 202 ------------E--RPELFETWLDMTP---------MGRCGEPSEIAAAALFLASPAASYVTGA--ILAVDGGY 251 (254)
T ss_dssp ------------T--CHHHHHHHHHTST---------TSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTG
T ss_pred ------------c--ChHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHhCcccccccCC--EEEECCCE
Confidence 0 0122223322222 24589999999999999875432 455 99998763
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.4e-25 Score=208.55 Aligned_cols=232 Identities=14% Similarity=0.104 Sum_probs=162.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc------CCCceeEE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL------TGKNIELY 157 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~v~~v 157 (479)
+++|+||||||+|+||.+++++|+++|++|++++|....... ..+.+... ...++.++
T Consensus 5 ~~~k~vlITGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 68 (264)
T 2pd6_A 5 LRSALALVTGAGSGIGRAVSVRLAGEGATVAACDLDRAAAQE----------------TVRLLGGPGSKEGPPRGNHAAF 68 (264)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH----------------HHHTC------------CCEEE
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHHHH----------------HHHHHHhcCccccccCcceEEE
Confidence 568899999999999999999999999999999986432111 11111110 01468899
Q ss_pred EcccCChHHHHHHhhhc-----CC-CEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----C-CcceE
Q 011707 158 IGDICDFEFLSESFKSF-----EP-DAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----R-QECHL 225 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~-----~~-D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g-~~~~~ 225 (479)
.+|++|.++++++++.. ++ |+||||||...... ...+.+++...+++|+.|+.++++++... + .+ +|
T Consensus 69 ~~D~~~~~~~~~~~~~~~~~~g~i~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g-~i 147 (264)
T 2pd6_A 69 QADVSEARAARCLLEQVQACFSRPPSVVVSCAGITQDEFLLHMSEDDWDKVIAVNLKGTFLVTQAAAQALVSNGCRG-SI 147 (264)
T ss_dssp ECCTTSHHHHHHHHHHHHHHHSSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCE-EE
T ss_pred EecCCCHHHHHHHHHHHHHHhCCCCeEEEECCCcCCCcchhhCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCCc-eE
Confidence 99999999998888743 35 99999999765322 22345567888999999999999988654 3 34 99
Q ss_pred EEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCC
Q 011707 226 VKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRT 302 (479)
Q Consensus 226 V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~ 302 (479)
|++||...+. +..+...|+.+|++.+.+++.++.+ .|++++++|||.++++..
T Consensus 148 v~isS~~~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~ 203 (264)
T 2pd6_A 148 INISSIVGKV------------------------GNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMT 203 (264)
T ss_dssp EEECCTHHHH------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSCC-
T ss_pred EEECChhhcc------------------------CCCCChhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeecccccch
Confidence 9999964332 1123689999999999999999888 689999999999999864
Q ss_pred CchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC--CCCCceEEEeCC
Q 011707 303 DETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA--QPGEFRVFNQFT 380 (479)
Q Consensus 303 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~g~~~~~ni~~ 380 (479)
.. ....+...+..+ .....+.+++|+|++++.++..+. ..|+ ++++.+
T Consensus 204 ~~-------------------~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~g 253 (264)
T 2pd6_A 204 QK-------------------VPQKVVDKITEM---------IPMGHLGDPEDVADVVAFLASEDSGYITGT--SVEVTG 253 (264)
T ss_dssp ----------------------------CTGGG---------CTTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEEST
T ss_pred hh-------------------cCHHHHHHHHHh---------CCCCCCCCHHHHHHHHHHHcCCcccCCCCC--EEEECC
Confidence 21 001111111111 112357899999999999997543 2354 999988
Q ss_pred CC-cCHH
Q 011707 381 EQ-FSVN 386 (479)
Q Consensus 381 ~~-~s~~ 386 (479)
+. ++..
T Consensus 254 g~~~~~~ 260 (264)
T 2pd6_A 254 GLFMAEN 260 (264)
T ss_dssp TC-----
T ss_pred Cceeccc
Confidence 53 4433
|
| >1ja9_A 4HNR, 1,3,6,8-tetrahydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, oxidoreductase, chain dehydrogenase; HET: NDP PYQ; 1.50A {Magnaporthe grisea} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=213.45 Aligned_cols=242 Identities=14% Similarity=0.021 Sum_probs=168.9
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+.+++|+||||||+|+||.+++++|+++|++|++++|..... ..+..+.+.. .+.++.++.+|+
T Consensus 17 ~~~~~k~vlItGasggiG~~la~~l~~~G~~v~~~~r~~~~~---------------~~~~~~~l~~-~~~~~~~~~~D~ 80 (274)
T 1ja9_A 17 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKA---------------AEEVVAELKK-LGAQGVAIQADI 80 (274)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---------------HHHHHHHHHH-TTCCEEEEECCT
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCchHH---------------HHHHHHHHHh-cCCcEEEEEecC
Confidence 346789999999999999999999999999999998832211 0111111111 135788999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeeccc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTMG 232 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~~ 232 (479)
+|+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++... + + +||++||..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~-~-~iv~~sS~~ 158 (274)
T 1ja9_A 81 SKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRG-G-RIILTSSIA 158 (274)
T ss_dssp TSHHHHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEE-E-EEEEECCGG
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhC-C-EEEEEcChH
Confidence 9999998888743 6999999999764322 22345566788999999999999998775 4 4 999999976
Q ss_pred cc-cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 233 EY-GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 233 v~-g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
.+ .. ..+...|+.+|++.|.+++.++.++ |++++++|||.++++....
T Consensus 159 ~~~~~------------------------~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~---- 210 (274)
T 1ja9_A 159 AVMTG------------------------IPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDE---- 210 (274)
T ss_dssp GTCCS------------------------CCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHH----
T ss_pred hccCC------------------------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcccccchhc----
Confidence 65 21 1235789999999999999999885 8999999999998874211
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
......+.+........+...+..+ ....++++++|+|++++.++..+.. .|+ +||+.++.
T Consensus 211 --~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~dva~~i~~l~~~~~~~~~G~--~~~v~gG~ 273 (274)
T 1ja9_A 211 --NSWHYAPGGYKGMPQEKIDEGLANM---------NPLKRIGYPADIGRAVSALCQEESEWINGQ--VIKLTGGG 273 (274)
T ss_dssp --HGGGTSTTCCTTCCHHHHHHHHHHT---------STTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTC
T ss_pred --ccccccccccccCchHHHHHHHHhc---------CCCCCccCHHHHHHHHHHHhCcccccccCc--EEEecCCc
Confidence 0000000000000001122222222 2345789999999999999976433 455 99998753
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=213.67 Aligned_cols=254 Identities=16% Similarity=0.124 Sum_probs=172.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|........ ........+.+..+.... .+.++.++.+|++
T Consensus 7 ~l~~k~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~ 81 (281)
T 3s55_A 7 DFEGKTALITGGARGMGRSHAVALAEAGADIAICDRCENSDVVG----YPLATADDLAETVALVEK-TGRRCISAKVDVK 81 (281)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCS----SCCCCHHHHHHHHHHHHH-TTCCEEEEECCTT
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCccccccc----cccccHHHHHHHHHHHHh-cCCeEEEEeCCCC
Confidence 45789999999999999999999999999999999863321000 000000111111222221 2457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++. +.+.+ +||++||..
T Consensus 82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~ 160 (281)
T 3s55_A 82 DRAALESFVAEAEDTLGGIDIAITNAGISTIALLPEVESAQWDEVIGTNLTGTFNTIAAVAPGMIKRNYG-RIVTVSSML 160 (281)
T ss_dssp CHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGG
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEECChh
Confidence 999998888754 7999999999865432 233566788899999999999999863 34555 999999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +..+...|+.||++.+.+++.++.++ |+++++++||.|++|.........
T Consensus 161 ~~~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~~~ 216 (281)
T 3s55_A 161 GHS------------------------ANFAQASYVSSKWGVIGLTKCAAHDLVGYGITVNAVAPGNIETPMTHNDFVFG 216 (281)
T ss_dssp GGS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSTTTSSHHHHH
T ss_pred hcC------------------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccCccccchhhhc
Confidence 552 22346899999999999999999974 899999999999999754321100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.+..... ........ .... ........+.+++|+|++++.++..... .|+ ++++.++
T Consensus 217 ~~~~~~~-----~~~~~~~~-~~~~-------~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~--~i~vdgG 275 (281)
T 3s55_A 217 TMRPDLE-----KPTLKDVE-SVFA-------SLHLQYAPFLKPEEVTRAVLFLVDEASSHITGT--VLPIDAG 275 (281)
T ss_dssp C------------CCHHHHH-HHHH-------HHCSSSCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ccccccc-----ccchhHHH-HHHH-------hhhccCcCCCCHHHHHHHHHHHcCCcccCCCCC--EEEECCC
Confidence 0000000 00000000 0000 0012225789999999999999986544 355 9999885
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.5e-25 Score=209.52 Aligned_cols=232 Identities=11% Similarity=0.019 Sum_probs=168.7
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+.+++|++|||||+|+||.+++++|+++|++|++++|..... +......+.++.++.+|+
T Consensus 23 ~~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~--------------------~~~~~~~~~~~~~~~~Dv 82 (277)
T 4dqx_A 23 MDLNQRVCIVTGGGSGIGRATAELFAKNGAYVVVADVNEDAA--------------------VRVANEIGSKAFGVRVDV 82 (277)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHH--------------------HHHHHHHCTTEEEEECCT
T ss_pred CCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH--------------------HHHHHHhCCceEEEEecC
Confidence 456789999999999999999999999999999999864321 111111245788999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
+|.++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++.. .+.+ +||++||.
T Consensus 83 ~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g-~iv~isS~ 161 (277)
T 4dqx_A 83 SSAKDAESMVEKTTAKWGRVDVLVNNAGFGTTGNVVTIPEETWDRIMSVNVKGIFLCSKYVIPVMRRNGGG-SIINTTSY 161 (277)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTTCE-EEEEECCG
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc-EEEEECch
Confidence 9999998888754 7999999999765432 2335567888999999999999988843 3444 99999997
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +..+...|+.||++.+.+++.++.++ |+++++++||.|..+....
T Consensus 162 ~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~---- 213 (277)
T 4dqx_A 162 TATS------------------------AIADRTAYVASKGAISSLTRAMAMDHAKEGIRVNAVAPGTIDSPYFTK---- 213 (277)
T ss_dssp GGTS------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH----
T ss_pred hhCc------------------------CCCCChhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCchhhh----
Confidence 6552 22347899999999999999999885 8999999999997763100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
.... ............. ......+.+++|+|++++.++..... .|+ ++++.++.
T Consensus 214 --~~~~-------~~~~~~~~~~~~~---------~~~~~r~~~pedvA~~v~~L~s~~~~~itG~--~i~vdGG~ 269 (277)
T 4dqx_A 214 --IFAE-------AKDPAKLRSDFNA---------RAVMDRMGTAEEIAEAMLFLASDRSRFATGS--ILTVDGGS 269 (277)
T ss_dssp --HHHT-------CSCHHHHHHHHHT---------TSTTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESSSS
T ss_pred --hccc-------ccchhHHHHHHHh---------cCcccCCcCHHHHHHHHHHHhCCccCCCcCC--EEEECCch
Confidence 0000 0000111111211 22334678999999999999976543 455 99998853
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-25 Score=209.06 Aligned_cols=235 Identities=14% Similarity=0.045 Sum_probs=165.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+. + ..++.++.+|++
T Consensus 9 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~---~-~~~~~~~~~D~~ 68 (263)
T 3ak4_A 9 DLSGRKAIVTGGSKGIGAAIARALDKAGATVAIADLDVMAA----------------QAVVAG---L-ENGGFAVEVDVT 68 (263)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHT---C-TTCCEEEECCTT
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHH---H-hcCCeEEEEeCC
Confidence 35689999999999999999999999999999998864321 111111 1 126788999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----C-CcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----R-QECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g-~~~~~V~~SS~ 231 (479)
|+++++++++.. ++|+||||||...... ...+++++...+++|+.|+.++++++... + .+ +||++||.
T Consensus 69 d~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g-~iv~isS~ 147 (263)
T 3ak4_A 69 KRASVDAAMQKAIDALGGFDLLCANAGVSTMRPAVDITDEEWDFNFDVNARGVFLANQIACRHFLASNTKG-VIVNTASL 147 (263)
T ss_dssp CHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCC-EEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCe-EEEEeccc
Confidence 999998888743 7999999999764332 23355677889999999999999988643 3 34 99999997
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +..+...|+.||++.+.+++.++.++ |++++++|||.|+++.......
T Consensus 148 ~~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~- 202 (263)
T 3ak4_A 148 AAKV------------------------GAPLLAHYSASKFAVFGWTQALAREMAPKNIRVNCVCPGFVKTAMQEREII- 202 (263)
T ss_dssp GGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBTTHHHHHHHH-
T ss_pred cccc------------------------CCCCchhHHHHHHHHHHHHHHHHHHHhHcCeEEEEEecccccChhhhhhcc-
Confidence 6542 11236789999999999999999885 8999999999998874211000
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
..... .+ .........+... .....+++++|+|++++.++..+.. .|+ +|++.++
T Consensus 203 ~~~~~----~~---~~~~~~~~~~~~~---------~p~~~~~~~~dvA~~v~~l~s~~~~~~tG~--~~~vdgG 259 (263)
T 3ak4_A 203 WEAEL----RG---MTPEAVRAEYVSL---------TPLGRIEEPEDVADVVVFLASDAARFMTGQ--GINVTGG 259 (263)
T ss_dssp HHHHH----HT---SCHHHHHHHHHHT---------CTTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESSS
T ss_pred ccccc----cc---cCcHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCccccCCCCC--EEEECcC
Confidence 00000 00 0001111112111 1234689999999999999976433 455 9999875
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=208.31 Aligned_cols=251 Identities=16% Similarity=0.083 Sum_probs=171.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|+++++........ ........+.+..+.... .+.++.++.+|++
T Consensus 10 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~ 84 (278)
T 3sx2_A 10 PLTGKVAFITGAARGQGRAHAVRLAADGADIIAVDLCDQIASVP----YPLATPEELAATVKLVED-IGSRIVARQADVR 84 (278)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCS----SCCCCHHHHHHHHHHHHH-HTCCEEEEECCTT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeccccccccc----ccccchHHHHHHHHHHHh-cCCeEEEEeCCCC
Confidence 56799999999999999999999999999999998863210000 000000111111222221 2457999999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
|+++++++++.. ++|+||||||...... ..+++..++++|+.|+.++++++.. .+...+||++||...
T Consensus 85 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~---~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~ 161 (278)
T 3sx2_A 85 DRESLSAALQAGLDELGRLDIVVANAGIAPMSA---GDDGWHDVIDVNLTGVYHTIKVAIPTLVKQGTGGSIVLISSSAG 161 (278)
T ss_dssp CHHHHHHHHHHHHHHHCCCCEEEECCCCCCCSS---THHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCC---CHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCCcEEEEEccHHh
Confidence 999998888753 7999999999765433 3456788999999999999998744 232239999999654
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+.... .+..+...|+.||++.+.+++.++.++ |+++++++||.|.++......
T Consensus 162 ~~~~~--------------------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~---- 217 (278)
T 3sx2_A 162 LAGVG--------------------SADPGSVGYVAAKHGVVGLMRVYANLLAGQMIRVNSIHPSGVETPMINNEF---- 217 (278)
T ss_dssp TSCCC--------------------CSSHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHH----
T ss_pred cCCCc--------------------cCCCCchHhHHHHHHHHHHHHHHHHHHhccCcEEEEEecCCccCccchhhh----
Confidence 42211 011235789999999999999999885 699999999999998654211
Q ss_pred hhcccCCCCcccchHHHHHHH-HhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQ-AAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
...++.. .........+.+... ..+++++|+|++++.++..... .|+ ++++.++.
T Consensus 218 --------------~~~~~~~~~~~~~~~~~~~~~~p-~~~~~p~dvA~~v~~l~s~~~~~itG~--~i~vdGG~ 275 (278)
T 3sx2_A 218 --------------TREWLAKMAAATDTPGAMGNAMP-VEVLAPEDVANAVAWLVSDQARYITGV--TLPVDAGF 275 (278)
T ss_dssp --------------HHHHHHHHHHHCC--CTTSCSSS-CSSBCHHHHHHHHHHHTSGGGTTCCSC--EEEESTTT
T ss_pred --------------HHHHHhhccchhhhhhhhhhhcC-cCcCCHHHHHHHHHHHhCcccccccCC--EEeECCCc
Confidence 1111211 111221112233233 6789999999999999875443 455 99998753
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-25 Score=206.24 Aligned_cols=226 Identities=15% Similarity=0.054 Sum_probs=163.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+....+.++.++.+|++|
T Consensus 5 ~~~~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~D~~~ 68 (248)
T 2pnf_A 5 LQGKVSLVTGSTRGIGRAIAEKLASAGSTVIITGTSGERA----------------KAVAEEIANKYGVKAHGVEMNLLS 68 (248)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHH----------------HHHHHHHHHHHCCCEEEEECCTTC
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCChHHH----------------HHHHHHHHhhcCCceEEEEccCCC
Confidence 5689999999999999999999999999999999854321 111111111123578899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccc-
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMG- 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~- 232 (479)
+++++++++.. ++|+||||||...... ...+.+++...+++|+.|+.++++++ ++.+.+ +||++||..
T Consensus 69 ~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~ 147 (248)
T 2pnf_A 69 EESINKAFEEIYNLVDGIDILVNNAGITRDKLFLRMSLLDWEEVLKVNLTGTFLVTQNSLRKMIKQRWG-RIVNISSVVG 147 (248)
T ss_dssp HHHHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHCHHHHHHTCE-EEEEECCHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc-EEEEEccHHh
Confidence 99998888743 7999999999765322 22344567788999999998777665 345656 999999964
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.++. .+...|+.+|++.+.+++.+++++ |++++++|||.++++....
T Consensus 148 ~~~~-------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~~i~v~~v~Pg~v~t~~~~~----- 197 (248)
T 2pnf_A 148 FTGN-------------------------VGQVNYSTTKAGLIGFTKSLAKELAPRNVLVNAVAPGFIETDMTAV----- 197 (248)
T ss_dssp HHCC-------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGG-----
T ss_pred cCCC-------------------------CCCchHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeceecCchhhh-----
Confidence 3432 235789999999999999998874 7999999999999875321
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
....+........+ ...+++++|+|++++.++..... .|+ +|++.++
T Consensus 198 --------------~~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~gg 246 (248)
T 2pnf_A 198 --------------LSEEIKQKYKEQIP---------LGRFGSPEEVANVVLFLCSELASYITGE--VIHVNGG 246 (248)
T ss_dssp --------------SCHHHHHHHHHTCT---------TSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred --------------ccHHHHHHHHhcCC---------CCCccCHHHHHHHHHHHhCchhhcCCCc--EEEeCCC
Confidence 00111122222211 23588999999999999976432 355 9999875
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-25 Score=207.13 Aligned_cols=222 Identities=11% Similarity=0.026 Sum_probs=161.5
Q ss_pred CCCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 81 NDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 81 ~~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.+.+++|+||||||+|+||.+++++|+++|++|++++|..... .+.+.. .++.++.+|
T Consensus 22 ~m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~------~~~~~~~~D 79 (260)
T 3gem_A 22 HMTLSSAPILITGASQRVGLHCALRLLEHGHRVIISYRTEHAS----------------VTELRQ------AGAVALYGD 79 (260)
T ss_dssp -----CCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESSCCHH----------------HHHHHH------HTCEEEECC
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCChHHH----------------HHHHHh------cCCeEEECC
Confidence 3456789999999999999999999999999999999864321 111111 247889999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
++|+++++++++.. ++|+||||||.........+++++.+++++|+.|+.++++++.. .+.+ +||++||.
T Consensus 80 v~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g-~iv~isS~ 158 (260)
T 3gem_A 80 FSCETGIMAFIDLLKTQTSSLRAVVHNASEWLAETPGEEADNFTRMFSVHMLAPYLINLHCEPLLTASEVA-DIVHISDD 158 (260)
T ss_dssp TTSHHHHHHHHHHHHHHCSCCSEEEECCCCCCCCCTTCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSC-EEEEECCG
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-EEEEECCh
Confidence 99999998888753 69999999997655444445667888999999999999998854 3444 99999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCCCCchhhhH
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
..+. +..+...|+.||++.+.+++.++.++ ++++++++||.|..+....
T Consensus 159 ~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~t~~~~~----- 209 (260)
T 3gem_A 159 VTRK------------------------GSSKHIAYCATKAGLESLTLSFAARFAPLVKVNGIAPALLMFQPKDD----- 209 (260)
T ss_dssp GGGT------------------------CCSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECTTCC----------
T ss_pred hhcC------------------------CCCCcHhHHHHHHHHHHHHHHHHHHHCCCCEEEEEeecccccCCCCC-----
Confidence 6542 22346899999999999999999987 4999999999998764221
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
..+....... ....-+..++|+|++++.+++.....|+ ++++.++
T Consensus 210 ----------------~~~~~~~~~~---------~p~~r~~~~edva~~v~~L~~~~~itG~--~i~vdGG 254 (260)
T 3gem_A 210 ----------------AAYRANALAK---------SALGIEPGAEVIYQSLRYLLDSTYVTGT--TLTVNGG 254 (260)
T ss_dssp -----------------------------------CCSCCCCCTHHHHHHHHHHHHCSSCCSC--EEEESTT
T ss_pred ----------------HHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhhCCCCCCC--EEEECCC
Confidence 1111111111 1223456789999999999976666676 9999885
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=205.28 Aligned_cols=226 Identities=15% Similarity=0.055 Sum_probs=160.3
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
...++|+||||||+|+||.+++++|+++|++|++++|.... ++........++.++.+|+
T Consensus 10 ~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~--------------------~~~~~~~~~~~~~~~~~D~ 69 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGSAIARLLHKLGSKVIISGSNEEK--------------------LKSLGNALKDNYTIEVCNL 69 (249)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HHHHHHHHCSSEEEEECCT
T ss_pred ccCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHH--------------------HHHHHHHhccCccEEEcCC
Confidence 35578999999999999999999999999999999985432 1111111124788999999
Q ss_pred CChHHHHHHhhhc-CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccccc
Q 011707 162 CDFEFLSESFKSF-EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGEYG 235 (479)
Q Consensus 162 ~d~~~~~~~~~~~-~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v~g 235 (479)
++.+++.++++.. ++|+||||||...... ...+++++..++++|+.|+.++++++.. .+.+ +||++||...+.
T Consensus 70 ~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~ 148 (249)
T 3f9i_A 70 ANKEECSNLISKTSNLDILVCNAGITSDTLAIRMKDQDFDKVIDINLKANFILNREAIKKMIQKRYG-RIINISSIVGIA 148 (249)
T ss_dssp TSHHHHHHHHHTCSCCSEEEECCC-------------CHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCCCC--
T ss_pred CCHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-EEEEEccHHhcc
Confidence 9999999999865 6999999999765332 2235567788999999999999888743 4445 999999965542
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
+..+...|+.||++.+.+++.++.++ |+++++++||.|.++.....
T Consensus 149 ------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~------- 197 (249)
T 3f9i_A 149 ------------------------GNPGQANYCASKAGLIGMTKSLSYEVATRGITVNAVAPGFIKSDMTDKL------- 197 (249)
T ss_dssp ------------------------CCSCSHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBC------C-------
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCccccCccccc-------
Confidence 22346899999999999999999874 89999999999988753210
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
..........+ .....+.+++|+|++++.++..+.. .|+ +|++.++.
T Consensus 198 ------------~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~s~~~~~~tG~--~~~vdgG~ 246 (249)
T 3f9i_A 198 ------------NEKQREAIVQK---------IPLGTYGIPEDVAYAVAFLASNNASYITGQ--TLHVNGGM 246 (249)
T ss_dssp ------------CHHHHHHHHHH---------CTTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTS
T ss_pred ------------CHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCCccCCccCc--EEEECCCE
Confidence 11122222221 2335688999999999999986544 355 99998864
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-24 Score=204.34 Aligned_cols=230 Identities=11% Similarity=0.034 Sum_probs=167.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 3 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~Dv~ 65 (257)
T 3imf_A 3 AMKEKVVIITGGSSGMGKGMATRFAKEGARVVITGRTKEKL----------------EEAKLEIEQ-FPGQILTVQMDVR 65 (257)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHCC-STTCEEEEECCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEEccCC
Confidence 35789999999999999999999999999999999865421 111222221 2357899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH-----HcCCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK-----EFRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~-----~~g~~~~~V~~SS~ 231 (479)
|+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++. +.+.+ +||++||.
T Consensus 66 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~~g-~iv~isS~ 144 (257)
T 3imf_A 66 NTDDIQKMIEQIDEKFGRIDILINNAAGNFICPAEDLSVNGWNSVINIVLNGTFYCSQAIGKYWIEKGIKG-NIINMVAT 144 (257)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC-EEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhCCCc-EEEEECch
Confidence 999998888754 7999999999754432 334566788899999999999999883 22344 99999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH----hCCceEEeecCeeecCCCCchhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA----WGIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
..+. +......|+.||++.+.+++.++.+ +|+++++++||.|.++.......
T Consensus 145 ~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~~gIrvn~v~PG~v~t~~~~~~~~ 200 (257)
T 3imf_A 145 YAWD------------------------AGPGVIHSAAAKAGVLAMTKTLAVEWGRKYGIRVNAIAPGPIERTGGADKLW 200 (257)
T ss_dssp GGGS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCBSSCCCC----
T ss_pred hhcc------------------------CCCCcHHHHHHHHHHHHHHHHHHHHhccccCeEEEEEEECCCcCCcchhhcc
Confidence 5542 2234688999999999999988865 38999999999999886432100
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
....+....... .....+.+++|+|++++.++..... .|+ ++++.++
T Consensus 201 ----------------~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~L~s~~~~~itG~--~i~vdGG 249 (257)
T 3imf_A 201 ----------------ISEEMAKRTIQS---------VPLGRLGTPEEIAGLAYYLCSDEAAYINGT--CMTMDGG 249 (257)
T ss_dssp -------------------CCSHHHHTT---------STTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ----------------cCHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHcCchhcCccCC--EEEECCC
Confidence 000011111111 2234578999999999999976543 455 9999885
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-24 Score=206.08 Aligned_cols=225 Identities=12% Similarity=0.041 Sum_probs=161.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|.... . +..+.+ .. .++.+|++|
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~-~----------------~~~~~~-----~~-~~~~~D~~~ 60 (256)
T 2d1y_A 4 FAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-K----------------EVAEAI-----GG-AFFQVDLED 60 (256)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-H----------------HHHHHH-----TC-EEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChhH-H----------------HHHHHh-----hC-CEEEeeCCC
Confidence 568999999999999999999999999999999886431 0 111111 13 788999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++.. .+.+ +||++||...
T Consensus 61 ~~~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g-~iv~isS~~~ 139 (256)
T 2d1y_A 61 ERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGG-AIVNVASVQG 139 (256)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCE-EEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEccccc
Confidence 99988887653 7999999999765332 2234556788999999999999988754 3455 9999999654
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +..+...|+.||++.+.+++.++.++ |+++++++||.+.++..
T Consensus 140 ~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~-------- 187 (256)
T 2d1y_A 140 LF------------------------AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAV-------- 187 (256)
T ss_dssp TS------------------------BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH--------
T ss_pred cC------------------------CCCCChhHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCccCchh--------
Confidence 32 11236789999999999999999885 89999999999976521
Q ss_pred hhcccCCCCcccchHHHHHHHHh-cCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAA-VGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
..++.... .......+........+++++|+|++++.++..+.. .|+ +|++.++
T Consensus 188 ---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvA~~~~~l~s~~~~~~~G~--~~~v~gG 244 (256)
T 2d1y_A 188 ---------------LEAIALSPDPERTRRDWEDLHALRRLGKPEEVAEAVLFLASEKASFITGA--ILPVDGG 244 (256)
T ss_dssp ---------------HHHHC--------CHHHHTTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ---------------hhccccccCCHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhCchhcCCCCC--EEEECCC
Confidence 11100000 000000111222345789999999999999976533 454 9999885
|
| >3i4f_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, 3-oxoacyl-reductase, PSI-2; 2.39A {Bacillus thuringiensis serovar kurstakorganism_taxid} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=206.66 Aligned_cols=229 Identities=12% Similarity=0.099 Sum_probs=166.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
..+|+||||||+|+||.+++++|+++|++|+++++...... +.........+.++.++.+|++|
T Consensus 5 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~Dl~~ 68 (264)
T 3i4f_A 5 RFVRHALITAGTKGLGKQVTEKLLAKGYSVTVTYHSDTTAM----------------ETMKETYKDVEERLQFVQADVTK 68 (264)
T ss_dssp -CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHHH----------------HHHHHHTGGGGGGEEEEECCTTS
T ss_pred cccCEEEEeCCCchhHHHHHHHHHHCCCEEEEEcCCChHHH----------------HHHHHHHHhcCCceEEEEecCCC
Confidence 35789999999999999999999999999999987643211 11111111223578999999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEccccc--Cc-ccccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQR--SA-PYSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTM 231 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~--~~-~~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~ 231 (479)
+++++++++.. ++|+||||||.. .. .....+.+++..++++|+.|+.++++++ ++.+.+ +||++||.
T Consensus 69 ~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~iss~ 147 (264)
T 3i4f_A 69 KEDLHKIVEEAMSHFGKIDFLINNAGPYVFERKKLVDYEEDEWNEMIQGNLTAVFHLLKLVVPVMRKQNFG-RIINYGFQ 147 (264)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEECCCCCCCCSCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCT
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCcccccCCCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCC-eEEEEeec
Confidence 99999888754 799999999942 21 2223355667888999999999999988 555655 99999997
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
+.++.. +..+...|+.+|++.+.+++.++.+ .|+++++++||.|+++....
T Consensus 148 ~~~~~~----------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~---- 201 (264)
T 3i4f_A 148 GADSAP----------------------GWIYRSAFAAAKVGLVSLTKTVAYEEAEYGITANMVCPGDIIGEMKEA---- 201 (264)
T ss_dssp TGGGCC----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCGGGGSC----
T ss_pred hhcccC----------------------CCCCCchhHHHHHHHHHHHHHHHHHhhhcCcEEEEEccCCccCccchh----
Confidence 554322 2234689999999999999999988 58999999999999885432
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
........... ......+.+++|+|++++.++..... .|+ ++++.++
T Consensus 202 ---------------~~~~~~~~~~~---------~~p~~r~~~~~dva~~v~~l~s~~~~~itG~--~i~vdGG 250 (264)
T 3i4f_A 202 ---------------TIQEARQLKEH---------NTPIGRSGTGEDIARTISFLCEDDSDMITGT--IIEVTGA 250 (264)
T ss_dssp ---------------CHHHHHHC-----------------CCCCHHHHHHHHHHHHSGGGTTCCSC--EEEESCS
T ss_pred ---------------ccHHHHHHHhh---------cCCCCCCcCHHHHHHHHHHHcCcccCCCCCc--EEEEcCc
Confidence 11222111111 12234578999999999999986543 355 9999875
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=205.73 Aligned_cols=218 Identities=14% Similarity=0.059 Sum_probs=161.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||++++++|+++|++|++++|..... .+..+.+ ..++.++.+|++|
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~----~~~~~~~~~D~~~ 64 (260)
T 1nff_A 5 LTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEG----------------KAMAAEL----ADAARYVHLDVTQ 64 (260)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHT----GGGEEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHh----hcCceEEEecCCC
Confidence 5689999999999999999999999999999998864321 1111111 1247889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++ ++.+.+ +||++||...
T Consensus 65 ~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~ 143 (260)
T 1nff_A 65 PAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRG-SIINISSIEG 143 (260)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEeehhh
Confidence 99998888743 7999999999764322 22345567889999999997776655 445555 9999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+.. ..+...|+.||++.+.+++.++.+ .|++++++|||.|+++....
T Consensus 144 ~~~------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------ 193 (260)
T 1nff_A 144 LAG------------------------TVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDW------ 193 (260)
T ss_dssp TSC------------------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTT------
T ss_pred cCC------------------------CCCchhHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCCCCcccc------
Confidence 532 123678999999999999999987 48999999999999884210
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
....+ . ......+.+++|+|++++.++..+.. .|+ +|++.++
T Consensus 194 -----------------------~~~~~--~--~~~~~~~~~~~dvA~~v~~l~s~~~~~~~G~--~~~v~gG 237 (260)
T 1nff_A 194 -----------------------VPEDI--F--QTALGRAAEPVEVSNLVVYLASDESSYSTGA--EFVVDGG 237 (260)
T ss_dssp -----------------------SCTTC--S--CCSSSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -----------------------chhhH--H--hCccCCCCCHHHHHHHHHHHhCccccCCcCC--EEEECCC
Confidence 00000 0 11224578999999999999875433 354 9999875
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=203.73 Aligned_cols=229 Identities=14% Similarity=0.117 Sum_probs=167.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEE-ecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIV-DSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++|+||||||+|+||.+++++|+++|++|+++ +|.... ..+..+.+.. .+.++.++.+|++|
T Consensus 3 ~~k~vlVTGas~gIG~aia~~l~~~G~~vv~~~~r~~~~----------------~~~~~~~~~~-~~~~~~~~~~Dv~~ 65 (258)
T 3oid_A 3 QNKCALVTGSSRGVGKAAAIRLAENGYNIVINYARSKKA----------------ALETAEEIEK-LGVKVLVVKANVGQ 65 (258)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSCHHH----------------HHHHHHHHHT-TTCCEEEEECCTTC
T ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEEEEcCCCHHH----------------HHHHHHHHHh-cCCcEEEEEcCCCC
Confidence 57899999999999999999999999999987 443221 1111222221 24578999999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++. +.+.+ +||++||...
T Consensus 66 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g-~iv~isS~~~ 144 (258)
T 3oid_A 66 PAKIKEMFQQIDETFGRLDVFVNNAASGVLRPVMELEETHWDWTMNINAKALLFCAQEAAKLMEKNGGG-HIVSISSLGS 144 (258)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCE-EEEEEEEGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEECchhh
Confidence 99998888754 7899999999754432 234566788899999999999999884 34445 9999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +..+...|+.||++.+.+++.++.++ |+++++++||.|..+......
T Consensus 145 ~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~---- 196 (258)
T 3oid_A 145 IR------------------------YLENYTTVGVSKAALEALTRYLAVELSPKQIIVNAVSGGAIDTDALKHFP---- 196 (258)
T ss_dssp TS------------------------BCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECCBCSGGGGGCT----
T ss_pred CC------------------------CCCCcHHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcChhhhhcc----
Confidence 42 22347899999999999999999985 799999999999877432110
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
....+........ ....+.+++|+|++++.++......-.++++++.++
T Consensus 197 -------------~~~~~~~~~~~~~---------p~~r~~~~~dva~~v~~L~s~~~~~itG~~i~vdGG 245 (258)
T 3oid_A 197 -------------NREDLLEDARQNT---------PAGRMVEIKDMVDTVEFLVSSKADMIRGQTIIVDGG 245 (258)
T ss_dssp -------------THHHHHHHHHHHC---------TTSSCBCHHHHHHHHHHHTSSTTTTCCSCEEEESTT
T ss_pred -------------cCHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCcccCCccCCEEEECCC
Confidence 0112222222222 224678999999999999987554322349999885
|
| >2hq1_A Glucose/ribitol dehydrogenase; CTH-1438, structural genomics, southeast collaboratory for structural genomics, secsg, PSI; 1.90A {Clostridium thermocellum} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-25 Score=207.19 Aligned_cols=226 Identities=16% Similarity=0.153 Sum_probs=153.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|+++++..... ..+..+.+.. .+.++.++.+|++|
T Consensus 3 l~~~~vlItGasggiG~~~a~~l~~~G~~V~~~~~r~~~~---------------~~~~~~~~~~-~~~~~~~~~~D~~~ 66 (247)
T 2hq1_A 3 LKGKTAIVTGSSRGLGKAIAWKLGNMGANIVLNGSPASTS---------------LDATAEEFKA-AGINVVVAKGDVKN 66 (247)
T ss_dssp TTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECTTCSH---------------HHHHHHHHHH-TTCCEEEEESCTTS
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEcCcCHHH---------------HHHHHHHHHh-cCCcEEEEECCCCC
Confidence 4689999999999999999999999999999985432210 1111111111 23578899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc-c
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM-G 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~-~ 232 (479)
+++++++++.. ++|+||||||...... ...+.+++...+++|+.|+.++++++.. .+.+ +||++||. +
T Consensus 67 ~~~~~~~~~~~~~~~~~~d~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~ 145 (247)
T 2hq1_A 67 PEDVENMVKTAMDAFGRIDILVNNAGITRDTLMLKMSEKDWDDVLNTNLKSAYLCTKAVSKIMLKQKSG-KIINITSIAG 145 (247)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECC---------------CHHHHHHTHHHHHHHHHHHHHHHHHHTCE-EEEEECC---
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcChhh
Confidence 99998888753 7999999999754322 2234556788899999999998888754 4555 99999995 4
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.|+.+ +...|+.+|++.|.+++.++.++ |+++++++||.+.++...
T Consensus 146 ~~~~~-------------------------~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~------ 194 (247)
T 2hq1_A 146 IIGNA-------------------------GQANYAASKAGLIGFTKSIAKEFAAKGIYCNAVAPGIIKTDMTD------ 194 (247)
T ss_dssp -------------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH------
T ss_pred ccCCC-------------------------CCcHhHHHHHHHHHHHHHHHHHHHHcCcEEEEEEEEEEeccchh------
Confidence 45432 25789999999999999998885 899999999998765210
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.....+...+..+ .....+++++|+|++++.++..+.. .|+ +||+.++
T Consensus 195 -------------~~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~gG 244 (247)
T 2hq1_A 195 -------------VLPDKVKEMYLNN---------IPLKRFGTPEEVANVVGFLASDDSNYITGQ--VINIDGG 244 (247)
T ss_dssp -------------TSCHHHHHHHHTT---------STTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -------------hcchHHHHHHHhh---------CCCCCCCCHHHHHHHHHHHcCcccccccCc--EEEeCCC
Confidence 0001122222222 1234688999999999999876432 455 9999875
|
| >3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=210.68 Aligned_cols=231 Identities=13% Similarity=0.024 Sum_probs=167.3
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
...++|+||||||+|+||.+++++|+++|++|++++|..... ...+..+.+|+
T Consensus 10 ~~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~---------------------------~~~~~~~~~Dv 62 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGLAVVDALVRYGAKVVSVSLDEKSD---------------------------VNVSDHFKIDV 62 (269)
T ss_dssp CTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCC--C---------------------------TTSSEEEECCT
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhc---------------------------cCceeEEEecC
Confidence 356799999999999999999999999999999998754311 12567789999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
+|.++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++.. .+.+ +||++||.
T Consensus 63 ~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~ 141 (269)
T 3vtz_A 63 TNEEEVKEAVEKTTKKYGRIDILVNNAGIEQYSPLHLTPTEIWRRIIDVNVNGSYLMAKYTIPVMLAIGHG-SIINIASV 141 (269)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCG
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEECch
Confidence 9999998888754 7999999999865433 2335567788999999999999988754 4555 99999997
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCCCCchhhhH
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
..+.. ......|+.||++.+.+++.++.++ ++++++++||.|.++.......
T Consensus 142 ~~~~~------------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~i~vn~v~PG~v~T~~~~~~~~-- 195 (269)
T 3vtz_A 142 QSYAA------------------------TKNAAAYVTSKHALLGLTRSVAIDYAPKIRCNAVCPGTIMTPMVIKAAK-- 195 (269)
T ss_dssp GGTSB------------------------CTTCHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCHHHHHHHH--
T ss_pred hhccC------------------------CCCChhHHHHHHHHHHHHHHHHHHhcCCCEEEEEEECCCcCcchhhhhh--
Confidence 66532 2346899999999999999999987 7999999999998763211000
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
. .. +............+... .....+.+++|+|++++.++......-.++++++.++
T Consensus 196 ~--~~----~~~~~~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 252 (269)
T 3vtz_A 196 M--EV----GEDENAVERKIEEWGRQ---------HPMGRIGRPEEVAEVVAFLASDRSSFITGACLTVDGG 252 (269)
T ss_dssp H--HH----CCSTTHHHHHHHHHHHH---------STTSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred c--cc----cccchhhHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCCccCCCcCcEEEECCC
Confidence 0 00 00000111222222221 2234678999999999999976544222249999886
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=208.43 Aligned_cols=230 Identities=15% Similarity=0.154 Sum_probs=166.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc-cccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL-IRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+++|+||||||+|+||.+++++|+++|++|++++|. ... +.+..+.+.. .+.++.++.+|++
T Consensus 5 l~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~-~~~~~~~~~~D~~ 67 (258)
T 3afn_B 5 LKGKRVLITGSSQGIGLATARLFARAGAKVGLHGRKAPAN----------------IDETIASMRA-DGGDAAFFAADLA 67 (258)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCCTT----------------HHHHHHHHHH-TTCEEEEEECCTT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEECCCchhh----------------HHHHHHHHHh-cCCceEEEECCCC
Confidence 467899999999999999999999999999999986 221 1111111211 1357899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccc-cCcc-cccccccccchhhhhhHHHHHHHHHHHHHc----C--C--cceEEE
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQ-RSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----R--Q--ECHLVK 227 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~-~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g--~--~~~~V~ 227 (479)
|+++++++++.. ++|+||||||. .... ....+.+++..++++|+.|+.++++++... + . ..+||+
T Consensus 68 ~~~~~~~~~~~~~~~~g~id~vi~~Ag~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 147 (258)
T 3afn_B 68 TSEACQQLVDEFVAKFGGIDVLINNAGGLVGRKPLPEIDDTFYDAVMDANIRSVVMTTKFALPHLAAAAKASGQTSAVIS 147 (258)
T ss_dssp SHHHHHHHHHHHHHHHSSCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCcCCcCccccCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcccCCCCCcEEEE
Confidence 999998888744 79999999996 3222 222344557788999999999999877431 2 1 139999
Q ss_pred eeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCc
Q 011707 228 LGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDE 304 (479)
Q Consensus 228 ~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~ 304 (479)
+||...+.. +..+...|+.+|++.|.+++.++.++ |++++++|||.++++....
T Consensus 148 ~sS~~~~~~-----------------------~~~~~~~Y~~sK~a~~~~~~~~~~e~~~~gi~v~~v~Pg~v~t~~~~~ 204 (258)
T 3afn_B 148 TGSIAGHTG-----------------------GGPGAGLYGAAKAFLHNVHKNWVDFHTKDGVRFNIVSPGTVDTAFHAD 204 (258)
T ss_dssp ECCTHHHHC-----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSGGGTT
T ss_pred ecchhhccC-----------------------CCCCchHHHHHHHHHHHHHHHHHHhhcccCeEEEEEeCCCcccccccc
Confidence 999765531 11236799999999999999998875 8999999999999985321
Q ss_pred hhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC---CCCCceEEEeCCC
Q 011707 305 TAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA---QPGEFRVFNQFTE 381 (479)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~---~~g~~~~~ni~~~ 381 (479)
....+...+..+.+ ...+++++|+|++++.++..+. ..|+ +|++.++
T Consensus 205 -------------------~~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~~~~~~~~~~G~--~~~v~gg 254 (258)
T 3afn_B 205 -------------------KTQDVRDRISNGIP---------MGRFGTAEEMAPAFLFFASHLASGYITGQ--VLDINGG 254 (258)
T ss_dssp -------------------CCHHHHHHHHTTCT---------TCSCBCGGGTHHHHHHHHCHHHHTTCCSE--EEEESTT
T ss_pred -------------------cCHHHHHHHhccCC---------CCcCCCHHHHHHHHHHHhCcchhccccCC--EEeECCC
Confidence 01223333333322 3468999999999999987542 2354 9999886
Q ss_pred Cc
Q 011707 382 QF 383 (479)
Q Consensus 382 ~~ 383 (479)
..
T Consensus 255 ~~ 256 (258)
T 3afn_B 255 QY 256 (258)
T ss_dssp SS
T ss_pred cc
Confidence 43
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-24 Score=203.61 Aligned_cols=223 Identities=15% Similarity=0.057 Sum_probs=161.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+ +.++.++.+|++|
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~----~~~~~~~~~D~~~ 62 (254)
T 1hdc_A 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEEG----------------AATAREL----GDAARYQHLDVTI 62 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHTT----GGGEEEEECCTTC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHh----CCceeEEEecCCC
Confidence 5689999999999999999999999999999998864311 1111111 3468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHH----HHHcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFA----MKEFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~----a~~~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.+++++ +++.+.+ +||++||...
T Consensus 63 ~~~~~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~ 141 (254)
T 1hdc_A 63 EEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGG-SIVNISSAAG 141 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEECchhh
Confidence 99988887643 6999999999764322 2335567788999999999866554 4555655 9999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +..+...|+.||++.+.+++.++.++ |+++++++||.|+++..
T Consensus 142 ~~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~-------- 189 (254)
T 1hdc_A 142 LM------------------------GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPMT-------- 189 (254)
T ss_dssp TS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHH--------
T ss_pred cc------------------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecccCcCccc--------
Confidence 52 12336899999999999999999874 89999999999988631
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccc-cHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYL-DIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.. .. ......+........+. +++|+|++++.++..+.. .|+ ++++.++
T Consensus 190 ---------------~~----~~-~~~~~~~~~~~p~~~~~~~~~dvA~~v~~l~s~~~~~~tG~--~~~vdgG 241 (254)
T 1hdc_A 190 ---------------AE----TG-IRQGEGNYPNTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGA--ELAVDGG 241 (254)
T ss_dssp ---------------HH----HT-CCCSTTSCTTSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ---------------cc----cc-hhHHHHHHhcCCCCCCCCCHHHHHHHHHHHhCchhcCCCCC--EEEECCC
Confidence 01 00 00000000111223467 999999999999976433 455 9999875
|
| >2fwm_X 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase; enterobactin, rossman fold, chorismate metabolism, short-CHA oxidoreductase, tetramer; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-24 Score=201.77 Aligned_cols=226 Identities=15% Similarity=0.069 Sum_probs=155.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|.... . ..++.++.+|++
T Consensus 4 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~------------------------~---~~~~~~~~~D~~ 56 (250)
T 2fwm_X 4 DFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQ------------------------E---QYPFATEVMDVA 56 (250)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCCCS------------------------S---CCSSEEEECCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCchhh------------------------h---cCCceEEEcCCC
Confidence 3578999999999999999999999999999999875320 0 013778899999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++ ++.+.+ +||++||..
T Consensus 57 d~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g-~iv~isS~~ 135 (250)
T 2fwm_X 57 DAAQVAQVCQRLLAETERLDALVNAAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGG-AIVTVASDA 135 (250)
T ss_dssp CHHHHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHHHhcCCC-EEEEECchh
Confidence 999998888743 6999999999754322 22355677889999999999999988 445555 999999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +..+...|+.+|++.+.+++.++.++ |+++++++||.|+++.......
T Consensus 136 ~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~-- 189 (250)
T 2fwm_X 136 AHT------------------------PRIGMSAYGASKAALKSLALSVGLELAGSGVRCNVVSPGSTDTDMQRTLWV-- 189 (250)
T ss_dssp GTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC------------
T ss_pred hCC------------------------CCCCCchHHHHHHHHHHHHHHHHHHhCccCCEEEEEECCcccCcccccccc--
Confidence 552 22346899999999999999999885 8999999999999885321000
Q ss_pred hhhcccCCCCcccchHHHHHH-HHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCV-QAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
...... .+..-. ..+........+.+++|+|++++.++..+.. .|+ ++++.++
T Consensus 190 ---------------~~~~~~~~~~~~~--~~~~~~~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~--~i~vdGG 245 (250)
T 2fwm_X 190 ---------------SDDAEEQRIRGFG--EQFKLGIPLGKIARPQEIANTILFLASDLASHITLQ--DIVVDGG 245 (250)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ---------------ChhHHHHHHhhhh--hcccccCCCCCCcCHHHHHHHHHHHhCccccCCCCC--EEEECCC
Confidence 000000 000000 0000011223478999999999999976433 455 8998875
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.9e-25 Score=210.51 Aligned_cols=229 Identities=14% Similarity=0.031 Sum_probs=166.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 11 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~D~~ 73 (260)
T 2zat_A 11 PLENKVALVTASTDGIGLAIARRLAQDGAHVVVSSRKQENV----------------DRTVATLQG-EGLSVTGTVCHVG 73 (260)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHH-TTCCEEEEECCTT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCceEEEEccCC
Confidence 45789999999999999999999999999999999864321 111112211 1346888999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~ 231 (479)
|.++++++++.. ++|+||||||.... +....+++++..++++|+.|+.++++++. +.+.+ +||++||.
T Consensus 74 ~~~~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g-~iv~isS~ 152 (260)
T 2zat_A 74 KAEDRERLVAMAVNLHGGVDILVSNAAVNPFFGNIIDATEEVWDKILHVNVKATVLMTKAVVPEMEKRGGG-SVLIVSSV 152 (260)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEEech
Confidence 999888887643 79999999997532 22233556678899999999999998874 34555 99999997
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+.. ..+...|+.+|++.+.+++.++.++ |+++++++||.|.++......
T Consensus 153 ~~~~~------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-- 206 (260)
T 2zat_A 153 GAYHP------------------------FPNLGPYNVSKTALLGLTKNLAVELAPRNIRVNCLAPGLIKTNFSQVLW-- 206 (260)
T ss_dssp GGTSC------------------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSTTHHHH--
T ss_pred hhcCC------------------------CCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcccCccchhcc--
Confidence 76632 2346899999999999999999885 899999999999887532100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.. .......... .....+.+++|+|++++.++..+.. .|+ +|++.++
T Consensus 207 -------------~~--~~~~~~~~~~---------~~~~~~~~~~dva~~v~~l~s~~~~~~tG~--~~~vdgG 255 (260)
T 2zat_A 207 -------------MD--KARKEYMKES---------LRIRRLGNPEDCAGIVSFLCSEDASYITGE--TVVVGGG 255 (260)
T ss_dssp -------------SS--HHHHHHHHHH---------HTCSSCBCGGGGHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred -------------cC--hHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCcccCCccCC--EEEECCC
Confidence 00 0000111110 1234678999999999999876543 455 9999985
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-24 Score=205.83 Aligned_cols=226 Identities=13% Similarity=0.079 Sum_probs=163.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec-ccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS-LIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+++|+||||||+|+||.+++++|+++|++|++++| .... +.+..+.+....+.++.++.+|++
T Consensus 9 ~~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~~Dl~ 72 (276)
T 1mxh_A 9 SECPAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA----------------AQRLVAELNAARAGSAVLCKGDLS 72 (276)
T ss_dssp --CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH----------------HHHHHHHHHHHSTTCEEEEECCCS
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCChHH----------------HHHHHHHHHHhcCCceEEEeccCC
Confidence 46889999999999999999999999999999998 4321 111112221111357889999999
Q ss_pred Ch----HHHHHHhhhc-----CCCEEEEcccccCccc-ccccc-----------cccchhhhhhHHHHHHHHHHHHHc--
Q 011707 163 DF----EFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDR-----------SRAVFTQHNNVIGTLNVLFAMKEF-- 219 (479)
Q Consensus 163 d~----~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~-----------~~~~~~~~~Nv~g~~~ll~~a~~~-- 219 (479)
|. ++++++++.. ++|+||||||...... ...+. +++..++++|+.|+.++++++...
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~ 152 (276)
T 1mxh_A 73 LSSSLLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQG 152 (276)
T ss_dssp SSTTHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-
T ss_pred CccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCccccCcccccccccchHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 99 8888887643 6999999999754322 22233 567788999999999999999874
Q ss_pred -CC------cceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCce
Q 011707 220 -RQ------ECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRA 289 (479)
Q Consensus 220 -g~------~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~ 289 (479)
+. + +||++||...+. +..+...|+.||++.+.+++.++.++ |+++
T Consensus 153 ~~~~~~~~~g-~iv~isS~~~~~------------------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~v 207 (276)
T 1mxh_A 153 EGGAWRSRNL-SVVNLCDAMTDL------------------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRV 207 (276)
T ss_dssp ------CCCE-EEEEECCGGGGS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEE
T ss_pred cCCCCCCCCc-EEEEECchhhcC------------------------CCCCCeehHHHHHHHHHHHHHHHHHHhhcCeEE
Confidence 33 4 999999976553 22346799999999999999999885 8999
Q ss_pred EEeecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 290 TDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 290 ~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
++++||.|++| ... ...+...+....++ .+++.+++|+|++++.++.....
T Consensus 208 ~~v~PG~v~t~-~~~--------------------~~~~~~~~~~~~p~--------~r~~~~~~dva~~v~~l~s~~~~ 258 (276)
T 1mxh_A 208 NAVAPGLSLLP-PAM--------------------PQETQEEYRRKVPL--------GQSEASAAQIADAIAFLVSKDAG 258 (276)
T ss_dssp EEEEESSBSCC-SSS--------------------CHHHHHHHHTTCTT--------TSCCBCHHHHHHHHHHHHSGGGT
T ss_pred EEEecCcccCC-ccC--------------------CHHHHHHHHhcCCC--------CCCCCCHHHHHHHHHHHhCcccc
Confidence 99999999998 211 01222222222211 12378999999999999975433
Q ss_pred --CCCceEEEeCCC
Q 011707 370 --PGEFRVFNQFTE 381 (479)
Q Consensus 370 --~g~~~~~ni~~~ 381 (479)
.|+ ++++.++
T Consensus 259 ~~tG~--~~~vdgG 270 (276)
T 1mxh_A 259 YITGT--TLKVDGG 270 (276)
T ss_dssp TCCSC--EEEESTT
T ss_pred CccCc--EEEECCc
Confidence 355 9999875
|
| >4dmm_A 3-oxoacyl-[acyl-carrier-protein] reductase; rossmann fold, oxoacyl-ACP reductase, NADP binding, fatty AC biosynthsis, oxidoreductase; HET: NAP; 2.38A {Synechococcus elongatus} PDB: 4dml_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-24 Score=204.15 Aligned_cols=226 Identities=16% Similarity=0.122 Sum_probs=168.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|+++++..... ..+..+.+.. .+.++.++.+|++
T Consensus 25 ~l~~k~vlVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~D~~ 88 (269)
T 4dmm_A 25 PLTDRIALVTGASRGIGRAIALELAAAGAKVAVNYASSAGA---------------ADEVVAAIAA-AGGEAFAVKADVS 88 (269)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH---------------HHHHHHHHHH-TTCCEEEEECCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCChHH---------------HHHHHHHHHh-cCCcEEEEECCCC
Confidence 46789999999999999999999999999999988743321 1111112211 2457889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
|.++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++. +.+.+ +||++||..
T Consensus 89 d~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~ 167 (269)
T 4dmm_A 89 QESEVEALFAAVIERWGRLDVLVNNAGITRDTLLLRMKRDDWQSVLDLNLGGVFLCSRAAAKIMLKQRSG-RIINIASVV 167 (269)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECchh
Confidence 999998888754 7999999999865432 233566788899999999999999874 34555 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.||++.+.+++.++.++ |+++++++||.|..+....
T Consensus 168 ~~~------------------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~----- 218 (269)
T 4dmm_A 168 GEM------------------------GNPGQANYSAAKAGVIGLTKTVAKELASRGITVNAVAPGFIATDMTSE----- 218 (269)
T ss_dssp HHH------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBTTSCSCH-----
T ss_pred hcC------------------------CCCCchhHHHHHHHHHHHHHHHHHHHhhhCcEEEEEEECCCcCccccc-----
Confidence 432 11236899999999999999999874 8999999999999886431
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC---CCCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA---QPGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~---~~g~~~~~ni~~~~ 382 (479)
. ........ .....+.+++|+|++++.++..+. ..|+ ++++.++.
T Consensus 219 ---------------~--~~~~~~~~---------~p~~r~~~~~dvA~~v~~l~s~~~~~~itG~--~i~vdGG~ 266 (269)
T 4dmm_A 219 ---------------L--AAEKLLEV---------IPLGRYGEAAEVAGVVRFLAADPAAAYITGQ--VINIDGGL 266 (269)
T ss_dssp ---------------H--HHHHHGGG---------CTTSSCBCHHHHHHHHHHHHHCGGGGGCCSC--EEEESTTS
T ss_pred ---------------c--cHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCCcccCCCcCC--EEEECCCe
Confidence 0 01122222 123467899999999999998742 2365 99998753
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-24 Score=203.38 Aligned_cols=225 Identities=13% Similarity=0.071 Sum_probs=167.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+ ..++..+.+|++
T Consensus 6 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~----~~~~~~~~~Dv~ 65 (248)
T 3op4_A 6 NLEGKVALVTGASRGIGKAIAELLAERGAKVIGTATSESGA----------------QAISDYL----GDNGKGMALNVT 65 (248)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHH----------------HHHHHHH----GGGEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHh----cccceEEEEeCC
Confidence 45789999999999999999999999999999998864321 1111111 235788999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++.. .+.+ +||++||..
T Consensus 66 d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g-~iv~isS~~ 144 (248)
T 3op4_A 66 NPESIEAVLKAITDEFGGVDILVNNAGITRDNLLMRMKEEEWSDIMETNLTSIFRLSKAVLRGMMKKRQG-RIINVGSVV 144 (248)
T ss_dssp CHHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEEcchh
Confidence 999998888754 7999999999865433 2335667888999999999999998854 4555 999999954
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +..+...|+.||++.+.+++.++.++ |+++++++||.|..+.....
T Consensus 145 ~~~------------------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---- 196 (248)
T 3op4_A 145 GTM------------------------GNAGQANYAAAKAGVIGFTKSMAREVASRGVTVNTVAPGFIETDMTKAL---- 196 (248)
T ss_dssp HHH------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSTTTTTS----
T ss_pred hcC------------------------CCCCChHHHHHHHHHHHHHHHHHHHHHHhCeEEEEEeeCCCCCchhhhc----
Confidence 432 22346899999999999999999875 89999999999987753210
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
............ ....+.+++|+|++++.++..... .|+ ++++.++.
T Consensus 197 ---------------~~~~~~~~~~~~---------p~~r~~~p~dva~~v~~L~s~~~~~itG~--~i~vdgG~ 245 (248)
T 3op4_A 197 ---------------NDEQRTATLAQV---------PAGRLGDPREIASAVAFLASPEAAYITGE--TLHVNGGM 245 (248)
T ss_dssp ---------------CHHHHHHHHHTC---------TTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTS
T ss_pred ---------------CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCCccCCccCc--EEEECCCe
Confidence 011122222221 234678999999999999875544 355 99998753
|
| >3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-25 Score=200.74 Aligned_cols=191 Identities=14% Similarity=0.118 Sum_probs=150.9
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+||||||+|+||++++++|+ +|++|++++|... .+.+|++|+++
T Consensus 4 M~vlVtGasg~iG~~~~~~l~-~g~~V~~~~r~~~----------------------------------~~~~D~~~~~~ 48 (202)
T 3d7l_A 4 MKILLIGASGTLGSAVKERLE-KKAEVITAGRHSG----------------------------------DVTVDITNIDS 48 (202)
T ss_dssp CEEEEETTTSHHHHHHHHHHT-TTSEEEEEESSSS----------------------------------SEECCTTCHHH
T ss_pred cEEEEEcCCcHHHHHHHHHHH-CCCeEEEEecCcc----------------------------------ceeeecCCHHH
Confidence 489999999999999999999 9999999987421 46899999999
Q ss_pred HHHHhhhc-CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeeccccccCCCCCC
Q 011707 167 LSESFKSF-EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTMGEYGTPNIDI 241 (479)
Q Consensus 167 ~~~~~~~~-~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~~v~g~~~~~~ 241 (479)
++++++.. ++|+||||||...... ...+++++...+++|+.|+.++++++.+. + .+||++||...+.
T Consensus 49 ~~~~~~~~~~~d~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~--~~iv~~sS~~~~~------ 120 (202)
T 3d7l_A 49 IKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGIDSLNDK--GSFTLTTGIMMED------ 120 (202)
T ss_dssp HHHHHHHHCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHTTTHHHHHHHHTTGGGEEEE--EEEEEECCGGGTS------
T ss_pred HHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHhhccHHHHHHHHHHHHHhccC--CEEEEEcchhhcC------
Confidence 99998854 5899999999754332 22344566788899999999999999876 4 4999999975542
Q ss_pred cCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCCCCchhhhHhhhcccCCCC
Q 011707 242 EEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVRTDETAMHEELCNRLDYDG 319 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g 319 (479)
+..+...|+.+|++.|.+++.++.++ |++++++|||.++++..
T Consensus 121 ------------------~~~~~~~Y~~sK~~~~~~~~~~~~e~~~gi~v~~v~pg~v~~~~~----------------- 165 (202)
T 3d7l_A 121 ------------------PIVQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNVLEESWD----------------- 165 (202)
T ss_dssp ------------------CCTTCHHHHHHHHHHHHHHHHHTTSCSTTCEEEEEEECCBGGGHH-----------------
T ss_pred ------------------CCCccHHHHHHHHHHHHHHHHHHHHccCCeEEEEEecCccCCchh-----------------
Confidence 22346899999999999999988764 89999999999998731
Q ss_pred cccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEe
Q 011707 320 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQ 378 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni 378 (479)
. . ++....+++++++|+|++++.++.. ...|+ +||+
T Consensus 166 -------~----~---------~~~~~~~~~~~~~dva~~~~~~~~~-~~~G~--~~~v 201 (202)
T 3d7l_A 166 -------K----L---------EPFFEGFLPVPAAKVARAFEKSVFG-AQTGE--SYQV 201 (202)
T ss_dssp -------H----H---------GGGSTTCCCBCHHHHHHHHHHHHHS-CCCSC--EEEE
T ss_pred -------h----h---------hhhccccCCCCHHHHHHHHHHhhhc-cccCc--eEec
Confidence 1 0 1112346789999999999998854 33455 8886
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.92 E-value=9e-25 Score=208.90 Aligned_cols=232 Identities=13% Similarity=0.003 Sum_probs=165.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+ +.++.++.+|++
T Consensus 26 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~----------------~~~~~~~----~~~~~~~~~Dv~ 85 (277)
T 3gvc_A 26 DLAGKVAIVTGAGAGIGLAVARRLADEGCHVLCADIDGDAA----------------DAAATKI----GCGAAACRVDVS 85 (277)
T ss_dssp -CTTCEEEETTTTSTHHHHHHHHHHHTTCEEEEEESSHHHH----------------HHHHHHH----CSSCEEEECCTT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHc----CCcceEEEecCC
Confidence 46789999999999999999999999999999999864321 1111111 457889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++.. .+.+ +||++||..
T Consensus 86 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~Iv~isS~~ 164 (277)
T 3gvc_A 86 DEQQIIAMVDACVAAFGGVDKLVANAGVVHLASLIDTTVEDFDRVIAINLRGAWLCTKHAAPRMIERGGG-AIVNLSSLA 164 (277)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCE-EEEEECCGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEcchh
Confidence 999988887754 7999999999865432 2345667888999999999999988854 4444 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +..+...|+.||++.+.+++.++.+ +|+++++++||.|++|.....
T Consensus 165 ~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~---- 216 (277)
T 3gvc_A 165 GQV------------------------AVGGTGAYGMSKAGIIQLSRITAAELRSSGIRSNTLLPAFVDTPMQQTA---- 216 (277)
T ss_dssp GTS------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHH----
T ss_pred hcc------------------------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCccCchHHHh----
Confidence 442 2234689999999999999999988 489999999999988732100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
... .............. ......+.+++|+|++++.++..... .|+ ++++.++.
T Consensus 217 --~~~-~~~~~~~~~~~~~~--------------~~~~~r~~~pedvA~~v~~L~s~~a~~itG~--~i~vdGG~ 272 (277)
T 3gvc_A 217 --MAM-FDGALGAGGARSMI--------------ARLQGRMAAPEEMAGIVVFLLSDDASMITGT--TQIADGGT 272 (277)
T ss_dssp --HTC-C------CCHHHHH--------------HHHHSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTG
T ss_pred --hhc-chhhHHHHhhhhhh--------------hccccCCCCHHHHHHHHHHHcCCccCCccCc--EEEECCcc
Confidence 000 00000000000000 01123578999999999999976443 455 99998853
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.8e-24 Score=201.24 Aligned_cols=228 Identities=13% Similarity=0.074 Sum_probs=169.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 2 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~ 64 (247)
T 3lyl_A 2 SLNEKVALVTGASRGIGFEVAHALASKGATVVGTATSQASA----------------EKFENSMKE-KGFKARGLVLNIS 64 (247)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHHH----------------HHHHHHHHH-TTCCEEEEECCTT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCceEEEEecCC
Confidence 35689999999999999999999999999999999865321 111111211 2457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+++++..++++|+.|+.++++++.. .+.+ +||++||..
T Consensus 65 ~~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~g-~iv~isS~~ 143 (247)
T 3lyl_A 65 DIESIQNFFAEIKAENLAIDILVNNAGITRDNLMMRMSEDEWQSVINTNLSSIFRMSKECVRGMMKKRWG-RIISIGSVV 143 (247)
T ss_dssp CHHHHHHHHHHHHHTTCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCe-EEEEEcchh
Confidence 999998888754 6899999999865432 2335567788999999999999988754 3444 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.||++.+.+++.++.++ |+++++++||.|..+.....
T Consensus 144 ~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~---- 195 (247)
T 3lyl_A 144 GSA------------------------GNPGQTNYCAAKAGVIGFSKSLAYEVASRNITVNVVAPGFIATDMTDKL---- 195 (247)
T ss_dssp HHH------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTTS----
T ss_pred hcc------------------------CCCCcHHHHHHHHHHHHHHHHHHHHHHHcCeEEEEEeeCcEecccchhc----
Confidence 442 12336899999999999999999874 89999999999988754321
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
........... .....+.+++|+|++++.++..... .|+ ++++.++.
T Consensus 196 ---------------~~~~~~~~~~~---------~~~~~~~~~~dva~~i~~l~s~~~~~~tG~--~i~vdgG~ 244 (247)
T 3lyl_A 196 ---------------TDEQKSFIATK---------IPSGQIGEPKDIAAAVAFLASEEAKYITGQ--TLHVNGGM 244 (247)
T ss_dssp ---------------CHHHHHHHHTT---------STTCCCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTS
T ss_pred ---------------cHHHHHHHhhc---------CCCCCCcCHHHHHHHHHHHhCCCcCCccCC--EEEECCCE
Confidence 11112222221 2335688999999999999976544 355 99998753
|
| >3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-24 Score=205.60 Aligned_cols=229 Identities=14% Similarity=0.079 Sum_probs=168.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|+++++... ..+..+.+.. .+.++.++.+|++
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~-----------------~~~~~~~~~~-~~~~~~~~~~Dv~ 89 (273)
T 3uf0_A 28 SLAGRTAVVTGAGSGIGRAIAHGYARAGAHVLAWGRTDG-----------------VKEVADEIAD-GGGSAEAVVADLA 89 (273)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTH-----------------HHHHHHHHHT-TTCEEEEEECCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCHHH-----------------HHHHHHHHHh-cCCcEEEEEecCC
Confidence 467899999999999999999999999999999985422 1111222211 2457899999999
Q ss_pred ChHHHHHHhhhc----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 163 DFEFLSESFKSF----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 163 d~~~~~~~~~~~----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
|.++++++.+.. ++|+||||||...... ...+.+++..++++|+.|+.++++++. +.+.+ +||++||...
T Consensus 90 d~~~v~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~IV~isS~~~ 168 (273)
T 3uf0_A 90 DLEGAANVAEELAATRRVDVLVNNAGIIARAPAEEVSLGRWREVLTVNLDAAWVLSRSFGTAMLAHGSG-RIVTIASMLS 168 (273)
T ss_dssp CHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGG
T ss_pred CHHHHHHHHHHHHhcCCCcEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcchHh
Confidence 999888775432 7999999999865433 233666788899999999999999873 34555 9999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +..+...|+.||++.+.+++.++.+ .|+++++++||.|.++......
T Consensus 169 ~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~---- 220 (273)
T 3uf0_A 169 FQ------------------------GGRNVAAYAASKHAVVGLTRALASEWAGRGVGVNALAPGYVVTANTAALR---- 220 (273)
T ss_dssp TS------------------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH----
T ss_pred cC------------------------CCCCChhHHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCchhhcc----
Confidence 42 2234689999999999999999988 5899999999999987532100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
........+.... ....+.+++|+|++++.++..... .|+ ++++.++.
T Consensus 221 -------------~~~~~~~~~~~~~---------p~~r~~~pedva~~v~~L~s~~a~~itG~--~i~vdGG~ 270 (273)
T 3uf0_A 221 -------------ADDERAAEITARI---------PAGRWATPEDMVGPAVFLASDAASYVHGQ--VLAVDGGW 270 (273)
T ss_dssp -------------TSHHHHHHHHHHS---------TTSSCBCGGGGHHHHHHHHSGGGTTCCSC--EEEESTTG
T ss_pred -------------cCHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCchhcCCcCC--EEEECcCc
Confidence 0011222222221 224678899999999999976443 455 99998753
|
| >2q2v_A Beta-D-hydroxybutyrate dehydrogenase; SDR, oxidoreductase; HET: NAD; 1.90A {Pseudomonas putida} PDB: 2q2q_A* 2q2w_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=203.40 Aligned_cols=235 Identities=10% Similarity=0.011 Sum_probs=164.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|.... +..+.+.. .+.++.++.+|++|
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~------------------~~~~~l~~-~~~~~~~~~~D~~~ 62 (255)
T 2q2v_A 2 LKGKTALVTGSTSGIGLGIAQVLARAGANIVLNGFGDPA------------------PALAEIAR-HGVKAVHHPADLSD 62 (255)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCCH------------------HHHHHHHT-TSCCEEEECCCTTS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH------------------HHHHHHHh-cCCceEEEeCCCCC
Confidence 468999999999999999999999999999999875320 11111111 13468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++ ++.+.+ +||++||...
T Consensus 63 ~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~ 141 (255)
T 2q2v_A 63 VAQIEALFALAEREFGGVDILVNNAGIQHVAPVEQFPLESWDKIIALNLSAVFHGTRLALPGMRARNWG-RIINIASVHG 141 (255)
T ss_dssp HHHHHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEcCchh
Confidence 99998888743 7999999999764322 23355677889999999888877766 455555 9999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+.. ..+...|+.+|++.+.+++.++.++ |+++++++||.|++|...... ..
T Consensus 142 ~~~------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~ 195 (255)
T 2q2v_A 142 LVG------------------------STGKAAYVAAKHGVVGLTKVVGLETATSNVTCNAICPGWVLTPLVQKQI--DD 195 (255)
T ss_dssp TSC------------------------CTTBHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEESSBCCHHHHHHH--HH
T ss_pred ccC------------------------CCCchhHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCCCcCcchhhhc--cc
Confidence 532 1236789999999999999999884 799999999999987421000 00
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
... ...........+. ........+++++|+|++++.++..+.. .|+ +|++.++
T Consensus 196 -~~~------~~~~~~~~~~~~~--------~~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~--~~~vdgG 251 (255)
T 2q2v_A 196 -RAA------NGGDPLQAQHDLL--------AEKQPSLAFVTPEHLGELVLFLCSEAGSQVRGA--AWNVDGG 251 (255)
T ss_dssp -HHH------HTCCHHHHHHHHH--------TTTCTTCCCBCHHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred -ccc------cccchHHHHHHHH--------hccCCCCCCcCHHHHHHHHHHHhCCccCCCCCC--EEEECCC
Confidence 000 0000000001110 1112334689999999999999875443 355 9999875
|
| >1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=202.81 Aligned_cols=214 Identities=20% Similarity=0.162 Sum_probs=162.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+||||||+|+||.+++++|+++|++|++++|... ...+.++.+|++|++
T Consensus 2 ~k~vlVtGasggiG~~la~~l~~~G~~V~~~~r~~~-----------------------------~~~~~~~~~D~~~~~ 52 (242)
T 1uay_A 2 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRRE-----------------------------GEDLIYVEGDVTREE 52 (242)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC-----------------------------SSSSEEEECCTTCHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCCEEEEEccCcc-----------------------------ccceEEEeCCCCCHH
Confidence 689999999999999999999999999999987532 024578999999999
Q ss_pred HHHHHhhhc----CCCEEEEcccccCcccccc-ccc----ccchhhhhhHHHHHHHHHHHHHcC---------CcceEEE
Q 011707 166 FLSESFKSF----EPDAVVHFGEQRSAPYSMI-DRS----RAVFTQHNNVIGTLNVLFAMKEFR---------QECHLVK 227 (479)
Q Consensus 166 ~~~~~~~~~----~~D~Vih~A~~~~~~~~~~-~~~----~~~~~~~~Nv~g~~~ll~~a~~~g---------~~~~~V~ 227 (479)
+++++++.. ++|+||||||......... +.+ ++...+++|+.|+.++++++.+.. ...+||+
T Consensus 53 ~~~~~~~~~~~~~~~d~li~~ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~~~iv~ 132 (242)
T 1uay_A 53 DVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRGVIVN 132 (242)
T ss_dssp HHHHHHHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSEEEEE
T ss_pred HHHHHHHHHHhhCCceEEEEcccccCcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCeEEEE
Confidence 999888744 7899999999754332211 222 567889999999999999987541 1128999
Q ss_pred eeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCc
Q 011707 228 LGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDE 304 (479)
Q Consensus 228 ~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~ 304 (479)
+||...+... .+...|+.+|++.+.+++.++.++ |++++++|||.|+++....
T Consensus 133 ~sS~~~~~~~------------------------~~~~~Y~~sK~a~~~~~~~l~~e~~~~gi~v~~v~Pg~v~t~~~~~ 188 (242)
T 1uay_A 133 TASVAAFEGQ------------------------IGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQG 188 (242)
T ss_dssp ECCTHHHHCC------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHHT
T ss_pred eCChhhccCC------------------------CCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccCcchhhhc
Confidence 9998766422 346899999999999999998875 8999999999999874211
Q ss_pred hhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 305 TAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
....+...+..+.++ ...+++++|+|++++.++......|+ +|++.++
T Consensus 189 -------------------~~~~~~~~~~~~~~~--------~~~~~~~~dva~~~~~l~~~~~~~G~--~~~v~gG 236 (242)
T 1uay_A 189 -------------------LPEKAKASLAAQVPF--------PPRLGRPEEYAALVLHILENPMLNGE--VVRLDGA 236 (242)
T ss_dssp -------------------SCHHHHHHHHTTCCS--------SCSCCCHHHHHHHHHHHHHCTTCCSC--EEEESTT
T ss_pred -------------------cchhHHHHHHhhCCC--------cccCCCHHHHHHHHHHHhcCCCCCCc--EEEEcCC
Confidence 011222333333221 03578999999999999987544566 9999875
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=208.54 Aligned_cols=238 Identities=12% Similarity=0.083 Sum_probs=167.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++|
T Consensus 22 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~Dv~d 84 (279)
T 3sju_A 22 SRPQTAFVTGVSSGIGLAVARTLAARGIAVYGCARDAKNV----------------SAAVDGLRA-AGHDVDGSSCDVTS 84 (279)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHT-TTCCEEEEECCTTC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEECCCCC
Confidence 4689999999999999999999999999999999864321 111222222 24578999999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH------cCCcceEEEeecc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE------FRQECHLVKLGTM 231 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~------~g~~~~~V~~SS~ 231 (479)
.++++++++.. ++|+||||||...... ...+++++..++++|+.|+.++++++.. .+.+ +||++||.
T Consensus 85 ~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~g-~iV~isS~ 163 (279)
T 3sju_A 85 TDEVHAAVAAAVERFGPIGILVNSAGRNGGGETADLDDALWADVLDTNLTGVFRVTREVLRAGGMREAGWG-RIVNIAST 163 (279)
T ss_dssp HHHHHHHHHHHHHHHCSCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSSHHHHTCE-EEEEECCG
T ss_pred HHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHhchhhHhhcCCc-EEEEECCh
Confidence 99988887654 7999999999865432 3345667888999999999999998755 4455 99999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +......|+.||++.+.+++.++.+ .|+++++++||.|.++....
T Consensus 164 ~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~~---- 215 (279)
T 3sju_A 164 GGKQ------------------------GVMYAAPYTASKHGVVGFTKSVGFELAKTGITVNAVCPGYVETPMAER---- 215 (279)
T ss_dssp GGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEESSBCSHHHHH----
T ss_pred hhcc------------------------CCCCChhHHHHHHHHHHHHHHHHHHHHhhCcEEEEEeeCcccchHHHH----
Confidence 5542 2234688999999999999999988 48999999999998763210
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
+.... ...+..........+... .....+.+++|+|++++.++..... .|+ ++++.++.
T Consensus 216 --~~~~~--~~~~~~~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~L~s~~a~~itG~--~i~vdGG~ 276 (279)
T 3sju_A 216 --VREGY--ARHWGVTEQEVHERFNAK---------IPLGRYSTPEEVAGLVGYLVTDAAASITAQ--ALNVCGGL 276 (279)
T ss_dssp --HHHSC--CSSSCCCHHHHHHHHHTT---------CTTSSCBCHHHHHHHHHHHTSSGGGGCCSC--EEEESTTC
T ss_pred --HHhhh--hhcccCChHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCccccCcCCc--EEEECCCc
Confidence 00000 000000011222222222 2334678999999999999876543 455 99998753
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-24 Score=202.61 Aligned_cols=233 Identities=13% Similarity=0.131 Sum_probs=164.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~ 80 (273)
T 1ae1_A 18 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKEL----------------DECLEIWRE-KGLNVEGSVCDLL 80 (273)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHH-TTCCEEEEECCTT
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCceEEEECCCC
Confidence 46789999999999999999999999999999999864321 111122211 1357889999999
Q ss_pred ChHHHHHHhhh------cCCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc
Q 011707 163 DFEFLSESFKS------FEPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~------~~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~ 231 (479)
|+++++++++. .++|+||||||...... ...+.+++..++++|+.|+.++++++. +.+.+ +||++||.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g-~iv~isS~ 159 (273)
T 1ae1_A 81 SRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNG-NVIFLSSI 159 (273)
T ss_dssp CHHHHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSE-EEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcCH
Confidence 99998888753 27999999999754322 223556778899999999999999884 34555 99999997
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+.. ..+...|+.||++.+.+++.++.++ |+++++++||.|+++......
T Consensus 160 ~~~~~------------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-- 213 (273)
T 1ae1_A 160 AGFSA------------------------LPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAI-- 213 (273)
T ss_dssp GGTSC------------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----------
T ss_pred hhcCC------------------------CCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCchhhhhh--
Confidence 76632 2336899999999999999999885 899999999999998532100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. .. .. ...+...+....+ ...+.+++|+|++++.++..... .|+ ++++.++
T Consensus 214 ----~----~~--~~-~~~~~~~~~~~~p---------~~r~~~p~dvA~~v~~l~s~~~~~~tG~--~i~vdGG 266 (273)
T 1ae1_A 214 ----K----KN--PH-QKEEIDNFIVKTP---------MGRAGKPQEVSALIAFLCFPAASYITGQ--IIWADGG 266 (273)
T ss_dssp ----------------CHHHHHHHHHHST---------TCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ----h----cc--cC-cHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCccccCcCCC--EEEECCC
Confidence 0 00 00 0011122221111 23478999999999999875433 455 9999875
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=204.97 Aligned_cols=240 Identities=12% Similarity=0.038 Sum_probs=162.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... +.+..+.+....+.++.++.+|++|
T Consensus 2 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---------------~~~~~~~~~~~~~~~~~~~~~D~~~ 66 (260)
T 1x1t_A 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAE---------------IEKVRAGLAAQHGVKVLYDGADLSK 66 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHH---------------HHHHHHHHHHHHTSCEEEECCCTTS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcchH---------------HHHHHHHHHhccCCcEEEEECCCCC
Confidence 4578999999999999999999999999999998754310 1111111111113468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++.. .+.+ +||++||...
T Consensus 67 ~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~ 145 (260)
T 1x1t_A 67 GEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFG-RIINIASAHG 145 (260)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGG
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEECcHHh
Confidence 99998887643 6999999999754322 2335567788999999999999988843 4555 9999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +..+...|+.||++.+.+++.++.++ |+++++++||.|.++...... ..
T Consensus 146 ~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~--~~ 199 (260)
T 1x1t_A 146 LV------------------------ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEKQI--SA 199 (260)
T ss_dssp TS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-----------
T ss_pred Cc------------------------CCCCCchHHHHHHHHHHHHHHHHHHhccCCEEEEEEeecCccCchHHHhh--hh
Confidence 42 12336899999999999999999885 799999999999988532100 00
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
... ..+. -.......+. ........+.+++|+|++++.++..... .|+ ++++.++
T Consensus 200 ~~~---~~~~---~~~~~~~~~~--------~~~~p~~~~~~p~dva~~~~~l~s~~~~~~tG~--~~~vdgG 256 (260)
T 1x1t_A 200 LAE---KNGV---DQETAARELL--------SEKQPSLQFVTPEQLGGTAVFLASDAAAQITGT--TVSVDGG 256 (260)
T ss_dssp ---------------------CH--------HHHCTTCCCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred hcc---ccCC---chHHHHHHHh--------hccCCCCCCcCHHHHHHHHHHHhChhhcCCCCC--EEEECCC
Confidence 000 0000 0000000000 0001224678999999999999975432 355 9999875
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=203.94 Aligned_cols=238 Identities=16% Similarity=0.173 Sum_probs=169.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 8 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~Dv~ 70 (264)
T 3ucx_A 8 LLTDKVVVISGVGPALGTTLARRCAEQGADLVLAARTVERL----------------EDVAKQVTD-TGRRALSVGTDIT 70 (264)
T ss_dssp TTTTCEEEEESCCTTHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHH-TTCCEEEEECCTT
T ss_pred CcCCcEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEEcCCC
Confidence 45789999999999999999999999999999999864321 111222221 2457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
|+++++++++.. ++|+||||||.... +....+.+++.+++++|+.|+.++++++.. .+ + +||++||.
T Consensus 71 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g-~iv~isS~ 148 (264)
T 3ucx_A 71 DDAQVAHLVDETMKAYGRVDVVINNAFRVPSMKPFANTTFEHMRDAIELTVFGALRLIQGFTPALEESK-G-AVVNVNSM 148 (264)
T ss_dssp CHHHHHHHHHHHHHHTSCCSEEEECCCSCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHT-C-EEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcC-C-EEEEECcc
Confidence 999998888754 79999999987532 223445667888999999999999988743 23 4 99999997
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +......|+.||++.+.+++.++.+ +|+++++++||.|+++.......
T Consensus 149 ~~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~~- 203 (264)
T 3ucx_A 149 VVRH------------------------SQAKYGAYKMAKSALLAMSQTLATELGEKGIRVNSVLPGYIWGGTLKSYFE- 203 (264)
T ss_dssp GGGC------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSCBSHHHHHHHH-
T ss_pred hhcc------------------------CCCccHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecCccccccHHHHHH-
Confidence 6542 2234679999999999999999988 58999999999998874221000
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
..... +......+...... ......+.+++|+|++++.++..... .|+ ++++.++.
T Consensus 204 -~~~~~------~~~~~~~~~~~~~~---------~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~--~i~vdGG~ 261 (264)
T 3ucx_A 204 -HQAGK------YGTSVEDIYNAAAA---------GSDLKRLPTEDEVASAILFMASDLASGITGQ--ALDVNCGE 261 (264)
T ss_dssp -HHHHH------TTCCHHHHHHHHHT---------TSSSSSCCBHHHHHHHHHHHHSGGGTTCCSC--EEEESTTS
T ss_pred -hhhhh------cCCCHHHHHHHHhc---------cCCcccCCCHHHHHHHHHHHcCccccCCCCC--EEEECCCc
Confidence 00000 00001122222222 23345688999999999999976443 455 99998854
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=200.97 Aligned_cols=225 Identities=16% Similarity=0.090 Sum_probs=159.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc-ccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI-RRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+++|+||||||+|+||.+++++|+++|++|++++|.. .. +.+ .+.. .+.++.++.+|++
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~---~~~~-~~~~~~~~~~Dv~ 64 (249)
T 2ew8_A 5 LKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAPE----------------AEA---AIRN-LGRRVLTVKCDVS 64 (249)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCHH----------------HHH---HHHH-TTCCEEEEECCTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCchhH----------------HHH---HHHh-cCCcEEEEEeecC
Confidence 5689999999999999999999999999999999864 21 011 1111 1357889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++ ++.+.+ +||++||..
T Consensus 65 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~ 143 (249)
T 2ew8_A 65 QPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWG-RIINLTSTT 143 (249)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCe-EEEEEcchh
Confidence 999988887542 7999999999764322 23355677889999999998888874 455555 999999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+.. ..+...|+.||++.+.+++.++.++ |+++++++||.|.++.....
T Consensus 144 ~~~~------------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---- 195 (249)
T 2ew8_A 144 YWLK------------------------IEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEAS---- 195 (249)
T ss_dssp GGSC------------------------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC------------
T ss_pred hccC------------------------CCCchhHHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcCcCccchhc----
Confidence 6532 2336899999999999999999885 89999999999988742200
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
..... ...... .. .....+.+++|+|++++.++..... .|+ ++++.++
T Consensus 196 --------------~~~~~-~~~~~~-~~------~~~~~~~~p~dva~~~~~l~s~~~~~~tG~--~~~vdGG 245 (249)
T 2ew8_A 196 --------------ALSAM-FDVLPN-ML------QAIPRLQVPLDLTGAAAFLASDDASFITGQ--TLAVDGG 245 (249)
T ss_dssp -------------------------C-TT------SSSCSCCCTHHHHHHHHHHTSGGGTTCCSC--EEEESSS
T ss_pred --------------cccch-hhHHHH-hh------CccCCCCCHHHHHHHHHHHcCcccCCCCCc--EEEECCC
Confidence 00000 000000 00 1223578999999999999875432 455 8998875
|
| >2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=203.60 Aligned_cols=228 Identities=16% Similarity=0.147 Sum_probs=165.6
Q ss_pred CCCcEEEEEcCC--chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGD--GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|+||||||+ |+||.+++++|+++|++|++++|.... .+..+.+.... .++.++.+|+
T Consensus 6 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~-----------------~~~~~~l~~~~-~~~~~~~~D~ 67 (261)
T 2wyu_A 6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERL-----------------RPEAEKLAEAL-GGALLFRADV 67 (261)
T ss_dssp CTTCEEEEESCCSSSSHHHHHHHHHHHHTCEEEEEESCGGG-----------------HHHHHHHHHHT-TCCEEEECCT
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHH-----------------HHHHHHHHHhc-CCcEEEECCC
Confidence 568999999999 999999999999999999999875420 01112221111 2378899999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeec
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS 230 (479)
+|+++++++++.. ++|+||||||.... +....+.+++.+++++|+.|+.++++++...- .+.+||++||
T Consensus 68 ~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 147 (261)
T 2wyu_A 68 TQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLTY 147 (261)
T ss_dssp TCHHHHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 9999998887753 68999999997542 22234556778899999999999999997651 1139999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
...+. +..+...|+.||++.+.+++.++.++ |+++++++||.|+++.....
T Consensus 148 ~~~~~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-- 201 (261)
T 2wyu_A 148 YASEK------------------------VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSI-- 201 (261)
T ss_dssp GGGTS------------------------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCTGGGGC--
T ss_pred ccccC------------------------CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCCCcCchhhhc--
Confidence 65442 12236789999999999999999886 89999999999999853210
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.....+...+....+ ...+.+++|+|++++.++..... .|+ +|++.++
T Consensus 202 ---------------~~~~~~~~~~~~~~p---------~~~~~~~~dva~~v~~l~s~~~~~~tG~--~~~vdgG 251 (261)
T 2wyu_A 202 ---------------PGFTKMYDRVAQTAP---------LRRNITQEEVGNLGLFLLSPLASGITGE--VVYVDAG 251 (261)
T ss_dssp ---------------TTHHHHHHHHHHHST---------TSSCCCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ---------------cccHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHcChhhcCCCCC--EEEECCC
Confidence 001222222222222 12467899999999999875433 355 9999885
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.9e-24 Score=204.06 Aligned_cols=233 Identities=13% Similarity=0.055 Sum_probs=168.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... +......+.++.++.+|++
T Consensus 13 ~l~gk~vlVTGas~gIG~~~a~~L~~~G~~V~~~~r~~~~~--------------------~~~~~~~~~~~~~~~~Dl~ 72 (291)
T 3rd5_A 13 SFAQRTVVITGANSGLGAVTARELARRGATVIMAVRDTRKG--------------------EAAARTMAGQVEVRELDLQ 72 (291)
T ss_dssp CCTTCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESCHHHH--------------------HHHHTTSSSEEEEEECCTT
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEECCHHHH--------------------HHHHHHhcCCeeEEEcCCC
Confidence 46789999999999999999999999999999999865421 1111111457999999999
Q ss_pred ChHHHHHHhhhc-CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC--
Q 011707 163 DFEFLSESFKSF-EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-- 239 (479)
Q Consensus 163 d~~~~~~~~~~~-~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-- 239 (479)
|.++++++++.. ++|+||||||..... ...+.+++..++++|+.|+.++++++.....+ +||++||...+.....
T Consensus 73 d~~~v~~~~~~~~~iD~lv~nAg~~~~~-~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~-riv~isS~~~~~~~~~~~ 150 (291)
T 3rd5_A 73 DLSSVRRFADGVSGADVLINNAGIMAVP-YALTVDGFESQIGTNHLGHFALTNLLLPRLTD-RVVTVSSMAHWPGRINLE 150 (291)
T ss_dssp CHHHHHHHHHTCCCEEEEEECCCCCSCC-CCBCTTSCBHHHHHHTHHHHHHHHHHGGGEEE-EEEEECCGGGTTCCCCSS
T ss_pred CHHHHHHHHHhcCCCCEEEECCcCCCCc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh-heeEeechhhccCCCCcc
Confidence 999999999865 689999999986533 33456678889999999999999999988766 9999999766543211
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---C--CceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---G--IRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---g--l~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
...++ ..+..+...|+.||++.+.+++.+++++ | +++++++||.|..+.....
T Consensus 151 ~~~~~-------------~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~g~~i~v~~v~PG~v~T~~~~~~--------- 208 (291)
T 3rd5_A 151 DLNWR-------------SRRYSPWLAYSQSKLANLLFTSELQRRLTAAGSPLRALAAHPGYSHTNLQGAS--------- 208 (291)
T ss_dssp CTTCS-------------SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCSGGGSCC-------------
T ss_pred ccccc-------------ccCCCCcchHHHHHHHHHHHHHHHHHHHhhCCCCEEEEEeeCCCCcccccccc---------
Confidence 11110 0133456889999999999999998875 5 9999999999977753210
Q ss_pred cCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
...+ ....... ...+-..+++|+|++++.++..+...|+ .+++.+
T Consensus 209 ----------~~~~-~~~~~~~--------~~~~~~~~~~~~A~~~~~l~~~~~~~G~--~~~vdg 253 (291)
T 3rd5_A 209 ----------GRKL-GDALMSA--------ATRVVATDADFGARQTLYAASQDLPGDS--FVGPRF 253 (291)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHSCCCTTC--EEEETT
T ss_pred ----------chHH-HHHHHHH--------HHHHHhCCHHHHHHHHHHHHcCCCCCCc--eeCCcc
Confidence 0001 0000000 0112234699999999999998766666 888765
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-24 Score=204.40 Aligned_cols=228 Identities=12% Similarity=0.019 Sum_probs=163.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||++++++|+++|++|++++|..... .+..+.+ +.++.++.+|++
T Consensus 3 ~l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~----~~~~~~~~~D~~ 62 (253)
T 1hxh_A 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAAG----------------QQLAAEL----GERSMFVRHDVS 62 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHHH----------------HHHHHHH----CTTEEEECCCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHc----CCceEEEEccCC
Confidence 35689999999999999999999999999999998754311 1111111 357889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++.+++. +.+ + +||++||..
T Consensus 63 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~-g-~iv~isS~~ 140 (253)
T 1hxh_A 63 SEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETG-G-SIINMASVS 140 (253)
T ss_dssp CHHHHHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTC-E-EEEEECCGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhcHHHHHHHHHHHHHHHHcC-C-EEEEEcchh
Confidence 999988887653 5899999999764322 233556778899999999888877653 344 4 999999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-----CCceEEeecCeeecCCCCchhh
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-----GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
.+. +..+...|+.||++.+.+++.++.++ |++++++|||.|+++....
T Consensus 141 ~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~~~~--- 193 (253)
T 1hxh_A 141 SWL------------------------PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQA--- 193 (253)
T ss_dssp GTS------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHH---
T ss_pred hcC------------------------CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCCeEEEEEEeCCccCchhhh---
Confidence 553 22346789999999999999998874 8999999999999874210
Q ss_pred hHhhhcccCCCCcccchHHHHHHH-HhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQ-AAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
..+ .. .... +.... .......+.+++|+|++++.++..+.. .|+ ++++.++.
T Consensus 194 ---~~~----~~--------~~~~~~~~~~------~~~p~~~~~~~~dvA~~~~~l~s~~~~~~tG~--~~~vdgG~ 248 (253)
T 1hxh_A 194 ---SLP----KG--------VSKEMVLHDP------KLNRAGRAYMPERIAQLVLFLASDESSVMSGS--ELHADNSI 248 (253)
T ss_dssp ---HSC----TT--------CCHHHHBCBT------TTBTTCCEECHHHHHHHHHHHHSGGGTTCCSC--EEEESSSC
T ss_pred ---ccc----hh--------hhHHHHhhhh------ccCccCCCCCHHHHHHHHHHHcCccccCCCCc--EEEECCCc
Confidence 000 00 0001 11100 011223578999999999999976543 355 99998753
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.8e-25 Score=209.01 Aligned_cols=225 Identities=10% Similarity=0.038 Sum_probs=162.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|.... ++......+.++.++.+|++
T Consensus 24 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~--------------------~~~~~~~~~~~~~~~~~Dv~ 83 (266)
T 3grp_A 24 KLTGRKALVTGATGGIGEAIARCFHAQGAIVGLHGTREDK--------------------LKEIAADLGKDVFVFSANLS 83 (266)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HHHHHHHHCSSEEEEECCTT
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH--------------------HHHHHHHhCCceEEEEeecC
Confidence 4678999999999999999999999999999999875431 11111112457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++. +.+.+ +||++||..
T Consensus 84 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~Iv~isS~~ 162 (266)
T 3grp_A 84 DRKSIKQLAEVAEREMEGIDILVNNAGITRDGLFVRMQDQDWDDVLAVNLTAASTLTRELIHSMMRRRYG-RIINITSIV 162 (266)
T ss_dssp SHHHHHHHHHHHHHHHTSCCEEEECCCCC-----CCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCC-
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-EEEEECCHH
Confidence 999998888743 7999999999765332 233556778899999999888777663 34555 999999964
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +..+...|+.||++.+.+++.++.++ |+++++++||.|.++....
T Consensus 163 ~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~t~~~~~----- 213 (266)
T 3grp_A 163 GVV------------------------GNPGQTNYCAAKAGLIGFSKALAQEIASRNITVNCIAPGFIKSAMTDK----- 213 (266)
T ss_dssp ------------------------------CHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHT-----
T ss_pred HcC------------------------CCCCchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCcCCCchhhc-----
Confidence 431 12236889999999999999999885 8999999999998763210
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
........+.... ....+.+++|+|++++.++..... .|+ ++++.++.
T Consensus 214 --------------~~~~~~~~~~~~~---------p~~r~~~~edvA~~v~~L~s~~~~~itG~--~i~vdGG~ 263 (266)
T 3grp_A 214 --------------LNEKQKEAIMAMI---------PMKRMGIGEEIAFATVYLASDEAAYLTGQ--TLHINGGM 263 (266)
T ss_dssp --------------CCHHHHHHHHTTC---------TTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTC
T ss_pred --------------cCHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCccccCccCC--EEEECCCe
Confidence 0112222333322 234678899999999999976544 455 99998753
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-24 Score=204.61 Aligned_cols=227 Identities=18% Similarity=0.087 Sum_probs=143.4
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|+
T Consensus 5 ~~~~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~ 67 (253)
T 3qiv_A 5 MRFENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAA----------------EAVAKQIVA-DGGTAISVAVDV 67 (253)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHH-TTCEEEEEECCT
T ss_pred cccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHH----------------HHHHHHHHh-cCCcEEEEEccC
Confidence 456789999999999999999999999999999999864421 111112211 245788999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCc----ccccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEe
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSA----PYSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKL 228 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~ 228 (479)
+|+++++++++.. ++|+||||||.... .....+++++..++++|+.|+.++++++ ++.+.+ +||++
T Consensus 68 ~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~i 146 (253)
T 3qiv_A 68 SDPESAKAMADRTLAEFGGIDYLVNNAAIFGGMKLDFLLTIDPEYYKKFMSVNLDGALWCTRAVYKKMTKRGGG-AIVNQ 146 (253)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCCCCGGGGGCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCC-EEEEE
Confidence 9999998888754 79999999997421 1123355667889999999977777665 444555 99999
Q ss_pred eccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCch
Q 011707 229 GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 229 SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~ 305 (479)
||...|. +...|+.||++.+.+++.++.++ |+++++++||.|+++.....
T Consensus 147 sS~~~~~---------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~ 199 (253)
T 3qiv_A 147 SSTAAWL---------------------------YSNYYGLAKVGINGLTQQLSRELGGRNIRINAIAPGPIDTEANRTT 199 (253)
T ss_dssp CC--------------------------------------CCHHHHHHHHHHHHHHTTTTTEEEEEEEC-----------
T ss_pred CCccccC---------------------------CCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEecCCcccchhhc
Confidence 9976552 14579999999999999999986 79999999999998854311
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
....+...+..+ .....+.+++|++++++.++..... .|+ +|++.++.
T Consensus 200 ------------------~~~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~s~~~~~~tG~--~~~vdgG~ 249 (253)
T 3qiv_A 200 ------------------TPKEMVDDIVKG---------LPLSRMGTPDDLVGMCLFLLSDEASWITGQ--IFNVDGGQ 249 (253)
T ss_dssp -----------------------------------------------CCHHHHHHHHHHSGGGTTCCSC--EEEC----
T ss_pred ------------------CcHHHHHHHhcc---------CCCCCCCCHHHHHHHHHHHcCccccCCCCC--EEEECCCe
Confidence 001122222222 2233566789999999999976443 455 99998753
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-24 Score=200.89 Aligned_cols=228 Identities=13% Similarity=0.043 Sum_probs=164.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec-ccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS-LIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+++|+||||||+|+||.+++++|+++|++|++++| ..... .+..+.+.. .+.++.++.+|++
T Consensus 5 l~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~~----------------~~~~~~l~~-~~~~~~~~~~D~~ 67 (261)
T 1gee_A 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDEA----------------NSVLEEIKK-VGGEAIAVKGDVT 67 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH----------------HHHHHHHHH-TTCEEEEEECCTT
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEcCCChHHH----------------HHHHHHHHh-cCCceEEEECCCC
Confidence 46789999999999999999999999999999988 32211 111111111 1357889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----C-CcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----R-QECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g-~~~~~V~~SS~ 231 (479)
|.+++.++++.. ++|+||||||...... ...+.+++...+++|+.|+.++++++... + .+ +||++||.
T Consensus 68 ~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~-~iv~isS~ 146 (261)
T 1gee_A 68 VESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKG-TVINMSSV 146 (261)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCC-EEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhCCCCC-EEEEeCCH
Confidence 999988887643 7999999999764322 22345567788999999999998887543 3 34 99999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +..+...|+.+|++.+.+++.++.++ |++++++|||.|+++......
T Consensus 147 ~~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~-- 200 (261)
T 1gee_A 147 HEKI------------------------PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKF-- 200 (261)
T ss_dssp GGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHH--
T ss_pred HhcC------------------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCcCCchhhhcc--
Confidence 5442 22347899999999999999998875 899999999999998532100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
....+...+.... ....+++++|+|++++.++..... .|+ ++++.++
T Consensus 201 ---------------~~~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~gg 249 (261)
T 1gee_A 201 ---------------ADPEQRADVESMI---------PMGYIGEPEEIAAVAAWLASSEASYVTGI--TLFADGG 249 (261)
T ss_dssp ---------------HSHHHHHHHHTTC---------TTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ---------------cChhHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCccccCCCCc--EEEEcCC
Confidence 0011222222211 123578999999999999875432 455 9999875
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-24 Score=204.40 Aligned_cols=229 Identities=15% Similarity=0.112 Sum_probs=159.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|+||||||+|+||.+++++|+++|++|++++...... ..+..+.+. ..+.++.++.+|++|.
T Consensus 25 ~~k~vlITGas~gIG~a~a~~l~~~G~~V~~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~Dl~~~ 88 (272)
T 4e3z_A 25 DTPVVLVTGGSRGIGAAVCRLAARQGWRVGVNYAANREA---------------ADAVVAAIT-ESGGEAVAIPGDVGNA 88 (272)
T ss_dssp CSCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---------------HHHHHHHHH-HTTCEEEEEECCTTCH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCChhH---------------HHHHHHHHH-hcCCcEEEEEcCCCCH
Confidence 578999999999999999999999999998875433211 111111121 1245789999999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHHHc------CCcceEEEeecc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF------RQECHLVKLGTM 231 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~------g~~~~~V~~SS~ 231 (479)
++++++++.. ++|+||||||..... ....+.+++..++++|+.|+.++++++... +...+||++||.
T Consensus 89 ~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~isS~ 168 (272)
T 4e3z_A 89 ADIAAMFSAVDRQFGRLDGLVNNAGIVDYPQRVDEMSVERIERMLRVNVTGSILCAAEAVRRMSRLYSGQGGAIVNVSSM 168 (272)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCT
T ss_pred HHHHHHHHHHHHhCCCCCEEEECCCCCCCCCChhhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHhccCCCCEEEEEcch
Confidence 9998888754 799999999986532 223355677889999999999999988654 122389999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+... ......|+.||++.+.+++.++.++ |+++++++||.|.++.....
T Consensus 169 ~~~~~~-----------------------~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--- 222 (272)
T 4e3z_A 169 AAILGS-----------------------ATQYVDYAASKAAIDTFTIGLAREVAAEGIRVNAVRPGIIETDLHASG--- 222 (272)
T ss_dssp HHHHCC-----------------------TTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----------
T ss_pred HhccCC-----------------------CCCcchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEecCCCcCCccccc---
Confidence 554211 1135679999999999999999886 89999999999998853210
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.......... .......+.+++|+|++++.++..... .|+ +|++.++
T Consensus 223 ---------------~~~~~~~~~~---------~~~~~~~~~~~edvA~~i~~l~s~~~~~~tG~--~i~vdgG 271 (272)
T 4e3z_A 223 ---------------GLPDRAREMA---------PSVPMQRAGMPEEVADAILYLLSPSASYVTGS--ILNVSGG 271 (272)
T ss_dssp -----------------------------------CCTTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ---------------CChHHHHHHh---------hcCCcCCCcCHHHHHHHHHHHhCCccccccCC--EEeecCC
Confidence 0111111111 112334567899999999999975443 355 9999875
|
| >3uxy_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: NAD; 2.10A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=205.55 Aligned_cols=223 Identities=15% Similarity=0.100 Sum_probs=163.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .....+.+|++
T Consensus 25 ~l~gk~vlVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~----------------------------~~~~~~~~Dv~ 76 (266)
T 3uxy_A 25 GFEGKVALVTGAAGGIGGAVVTALRAAGARVAVADRAVAGI----------------------------AADLHLPGDLR 76 (266)
T ss_dssp -CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECSSCCTTS----------------------------CCSEECCCCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------------------HhhhccCcCCC
Confidence 45789999999999999999999999999999988753311 11234479999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~ 232 (479)
|.+++.++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++ ++.+.+ +||++||..
T Consensus 77 ~~~~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~ 155 (266)
T 3uxy_A 77 EAAYADGLPGAVAAGLGRLDIVVNNAGVISRGRITETTDADWSLSLGVNVEAPFRICRAAIPLMAAAGGG-AIVNVASCW 155 (266)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCSB
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEECCHH
Confidence 998888777643 7999999999865433 23356678889999999999999998 455555 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +..+...|+.||++.+.+++.++.++ |+++++++||.|.++......
T Consensus 156 ~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~--- 208 (266)
T 3uxy_A 156 GLR------------------------PGPGHALYCLTKAALASLTQCMGMDHAPQGIRINAVCPNEVNTPMLRTGF--- 208 (266)
T ss_dssp TTB------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCCHHHHHHH---
T ss_pred hCC------------------------CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCCCcchHhhhhh---
Confidence 442 22346899999999999999999886 899999999999887421100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.. . ..........+... .....+.+++|+|++++.++..... .|+ ++++.++
T Consensus 209 ---~~---~---~~~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~L~s~~~~~itG~--~i~vdGG 262 (266)
T 3uxy_A 209 ---AK---R---GFDPDRAVAELGRT---------VPLGRIAEPEDIADVVLFLASDAARYLCGS--LVEVNGG 262 (266)
T ss_dssp ---HH---T---TCCHHHHHHHHHTT---------STTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ---hc---c---cccchHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCchhcCCcCC--EEEECcC
Confidence 00 0 00011112222222 2345678999999999999986544 355 9999875
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-24 Score=201.76 Aligned_cols=232 Identities=14% Similarity=0.100 Sum_probs=165.7
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+....+.++.++.+|+
T Consensus 17 ~~l~~k~~lVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~Dl 80 (267)
T 1vl8_A 17 FDLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEEA----------------SEAAQKLTEKYGVETMAFRCDV 80 (267)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHHHCCCEEEEECCT
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHHhcCCeEEEEEcCC
Confidence 356789999999999999999999999999999998864321 1111111011135688899999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
+|+++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++.. .+.+ +||++||.
T Consensus 81 ~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g-~iv~isS~ 159 (267)
T 1vl8_A 81 SNYEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNP-SIINIGSL 159 (267)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSC-EEEEECCG
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc-EEEEECCc
Confidence 9999998887643 6999999999765332 2335567788999999999999988743 3445 99999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
.+.. .+..+...|+.||++.+.+++.++.++ |+++++++||.|..+......
T Consensus 160 ~~~~-----------------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~-- 214 (267)
T 1vl8_A 160 TVEE-----------------------VTMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVF-- 214 (267)
T ss_dssp GGTC-----------------------CCSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHH--
T ss_pred chhc-----------------------cCCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCccccccccc--
Confidence 5210 122336789999999999999999884 899999999999877421100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. -...........+ ...+++.+|+|++++.++..... .|+ ++++.++
T Consensus 215 -------------~--~~~~~~~~~~~~p---------~~~~~~p~dvA~~v~~l~s~~~~~itG~--~i~vdGG 263 (267)
T 1vl8_A 215 -------------S--DPEKLDYMLKRIP---------LGRTGVPEDLKGVAVFLASEEAKYVTGQ--IIFVDGG 263 (267)
T ss_dssp -------------T--CHHHHHHHHHTCT---------TSSCBCGGGGHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -------------c--ChHHHHHHHhhCC---------CCCCcCHHHHHHHHHHHcCccccCCcCC--eEEECCC
Confidence 0 0111222222211 23478999999999999876433 455 8888775
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=206.69 Aligned_cols=231 Identities=14% Similarity=0.061 Sum_probs=169.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+....+.++.++.+|++
T Consensus 17 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~Dv~ 80 (266)
T 4egf_A 17 RLDGKRALITGATKGIGADIARAFAAAGARLVLSGRDVSEL----------------DAARRALGEQFGTDVHTVAIDLA 80 (266)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHHHCCCEEEEECCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHHhcCCcEEEEEecCC
Confidence 46789999999999999999999999999999999864321 11222222223467999999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++... +...+||++||..
T Consensus 81 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~ 160 (266)
T 4egf_A 81 EPDAPAELARRAAEAFGGLDVLVNNAGISHPQPVVDTDPQLFDATIAVNLRAPALLASAVGKAMVAAGEGGAIITVASAA 160 (266)
T ss_dssp STTHHHHHHHHHHHHHTSCSEEEEECCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCeEEEEEcchh
Confidence 999988887654 7999999999865433 33456678889999999999999888542 3223999999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.||++.+.+++.++.++ |+++++++||.|..+......
T Consensus 161 ~~~------------------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~--- 213 (266)
T 4egf_A 161 ALA------------------------PLPDHYAYCTSKAGLVMATKVLARELGPHGIRANSVCPTVVLTEMGQRVW--- 213 (266)
T ss_dssp GTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBCSHHHHHHT---
T ss_pred hcc------------------------CCCCChHHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCchhhhhc---
Confidence 552 22346899999999999999999884 899999999999876321000
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. ............ ....+.+++|+|++++.++..... .|+ ++++.++
T Consensus 214 ------------~--~~~~~~~~~~~~---------p~~r~~~p~dva~~v~~L~s~~~~~itG~--~i~vdGG 262 (266)
T 4egf_A 214 ------------G--DEAKSAPMIARI---------PLGRFAVPHEVSDAVVWLASDAASMINGV--DIPVDGG 262 (266)
T ss_dssp ------------C--SHHHHHHHHTTC---------TTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ------------c--ChHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhcCccCc--EEEECCC
Confidence 0 011122222222 234578899999999999976443 455 9999875
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.5e-24 Score=204.48 Aligned_cols=228 Identities=13% Similarity=0.080 Sum_probs=157.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|+++++..... ..+..+.+.. .+.++.++.+|++|
T Consensus 27 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~Dv~d 90 (280)
T 4da9_A 27 KARPVAIVTGGRRGIGLGIARALAASGFDIAITGIGDAEG---------------VAPVIAELSG-LGARVIFLRADLAD 90 (280)
T ss_dssp CCCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCHHH---------------HHHHHHHHHH-TTCCEEEEECCTTS
T ss_pred cCCCEEEEecCCCHHHHHHHHHHHHCCCeEEEEeCCCHHH---------------HHHHHHHHHh-cCCcEEEEEecCCC
Confidence 5689999999999999999999999999999998643211 1111122221 24578999999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccC--c-ccccccccccchhhhhhHHHHHHHHHHHHHc----C---CcceEEEe
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRS--A-PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----R---QECHLVKL 228 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~--~-~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g---~~~~~V~~ 228 (479)
+++++++++.. ++|+||||||... . +....+++++..++++|+.|+.++++++... + .+ +||++
T Consensus 91 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~g-~Iv~i 169 (280)
T 4da9_A 91 LSSHQATVDAVVAEFGRIDCLVNNAGIASIVRDDFLDLKPENFDTIVGVNLRGTVFFTQAVLKAMLASDARASR-SIINI 169 (280)
T ss_dssp GGGHHHHHHHHHHHHSCCCEEEEECC------CCGGGCCHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCCCCCE-EEEEE
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCccccCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCCCCCC-EEEEE
Confidence 99988888754 7999999999732 1 2233356678889999999999999887543 2 33 89999
Q ss_pred eccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCch
Q 011707 229 GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 229 SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~ 305 (479)
||...+. +......|+.||++.+.+++.++.+ .|+++++++||.|..+.....
T Consensus 170 sS~~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~ 225 (280)
T 4da9_A 170 TSVSAVM------------------------TSPERLDYCMSKAGLAAFSQGLALRLAETGIAVFEVRPGIIRSDMTAAV 225 (280)
T ss_dssp CCC-------------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC------
T ss_pred cchhhcc------------------------CCCCccHHHHHHHHHHHHHHHHHHHHHHhCcEEEEEeecCCcCCchhhc
Confidence 9965442 2233678999999999999999988 479999999999988753210
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.......... .......+.+++|+|++++.++..... .|+ ++++.++
T Consensus 226 -------------------~~~~~~~~~~--------~~~p~~r~~~pedvA~~v~~L~s~~~~~itG~--~i~vdGG 274 (280)
T 4da9_A 226 -------------------SGKYDGLIES--------GLVPMRRWGEPEDIGNIVAGLAGGQFGFATGS--VIQADGG 274 (280)
T ss_dssp -------------------------------------------CCBCHHHHHHHHHHHHTSTTGGGTTC--EEEESTT
T ss_pred -------------------chhHHHHHhh--------cCCCcCCcCCHHHHHHHHHHHhCccccCCCCC--EEEECCC
Confidence 0011111111 012335678999999999999987653 455 9999875
|
| >1h5q_A NADP-dependent mannitol dehydrogenase; oxidoreductase, mannitol metabolism; HET: NAP; 1.50A {Agaricus bisporus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-24 Score=205.44 Aligned_cols=237 Identities=16% Similarity=0.182 Sum_probs=168.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+....+.++.++.+|++
T Consensus 11 ~~~~k~vlITGasggiG~~~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~Dl~ 74 (265)
T 1h5q_A 11 SFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAADA----------------VEVTEKVGKEFGVKTKAYQCDVS 74 (265)
T ss_dssp CCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTTH----------------HHHHHHHHHHHTCCEEEEECCTT
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCcchhh----------------HHHHHHHHHhcCCeeEEEEeeCC
Confidence 45789999999999999999999999999999999853311 01111121112357889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~ 232 (479)
|.++++++++.. ++|+||||||...... ...+.+++...+++|+.|+.++++++... +...+||++||..
T Consensus 75 ~~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~iv~~sS~~ 154 (265)
T 1h5q_A 75 NTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSMS 154 (265)
T ss_dssp CHHHHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHhhhhHhHHHHHHHHHHHHHhcCCCceEEEeCCch
Confidence 999998887642 4899999999765332 22355567788999999999999988643 3223999999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+...... . .+..+...|+.+|++.+.+++.++.++ |++++++|||.|+++.....
T Consensus 155 ~~~~~~~~--~---------------~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~---- 213 (265)
T 1h5q_A 155 SQIINQSS--L---------------NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTAHM---- 213 (265)
T ss_dssp GTSCCEEE--T---------------TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGGGS----
T ss_pred hhcccccc--c---------------cccccccccHHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccccccccc----
Confidence 54321100 0 122346899999999999999999875 89999999999998853210
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC--CCCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA--QPGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~g~~~~~ni~~~~ 382 (479)
...+........+ ...+++++|+|++++.++..+. ..|+ +|++.++.
T Consensus 214 ---------------~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~gG~ 262 (265)
T 1h5q_A 214 ---------------DKKIRDHQASNIP---------LNRFAQPEEMTGQAILLLSDHATYMTGG--EYFIDGGQ 262 (265)
T ss_dssp ---------------CHHHHHHHHHTCT---------TSSCBCGGGGHHHHHHHHSGGGTTCCSC--EEEECTTG
T ss_pred ---------------chhHHHHHHhcCc---------ccCCCCHHHHHHHHHhhccCchhcCcCc--EEEecCCE
Confidence 0112222222211 2357899999999999997643 2455 99998753
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=203.56 Aligned_cols=225 Identities=18% Similarity=0.152 Sum_probs=164.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+ +.++.++.+|++
T Consensus 9 ~~~~k~vlVTGasggiG~~~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~----~~~~~~~~~D~~ 68 (265)
T 2o23_A 9 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG----------------EAQAKKL----GNNCVFAPADVT 68 (265)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSH----------------HHHHHHH----CTTEEEEECCTT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCcHhH----------------HHHHHHh----CCceEEEEcCCC
Confidence 45789999999999999999999999999999999864321 1111111 357899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccccc-------ccccccchhhhhhHHHHHHHHHHHHHc----------C
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSM-------IDRSRAVFTQHNNVIGTLNVLFAMKEF----------R 220 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~-------~~~~~~~~~~~~Nv~g~~~ll~~a~~~----------g 220 (479)
|+++++++++.. ++|+||||||........ .+.+++...+++|+.|+.++++++... +
T Consensus 69 ~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~ 148 (265)
T 2o23_A 69 SEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQ 148 (265)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSC
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCccCCCCccccccccCCCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccCCC
Confidence 999998888743 799999999976433211 244567788999999999999998764 4
Q ss_pred CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCee
Q 011707 221 QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVV 297 (479)
Q Consensus 221 ~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v 297 (479)
.+ +||++||...+.. ..+...|+.+|++.+.+++.++.++ |+++++++||.|
T Consensus 149 ~~-~iv~isS~~~~~~------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v 203 (265)
T 2o23_A 149 RG-VIINTASVAAFEG------------------------QVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLF 203 (265)
T ss_dssp CE-EEEEECCTHHHHC------------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCB
T ss_pred Cc-EEEEeCChhhcCC------------------------CCCCchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeccc
Confidence 44 9999999766532 1236899999999999999998874 899999999999
Q ss_pred ecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEE
Q 011707 298 YGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFN 377 (479)
Q Consensus 298 ~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~n 377 (479)
.++..... ...+........+. ...+++++|+|++++.++......|+ +++
T Consensus 204 ~t~~~~~~-------------------~~~~~~~~~~~~~~--------~~~~~~~~dva~~~~~l~~~~~~~G~--~i~ 254 (265)
T 2o23_A 204 GTPLLTSL-------------------PEKVCNFLASQVPF--------PSRLGDPAEYAHLVQAIIENPFLNGE--VIR 254 (265)
T ss_dssp CCC-----------------------------CHHHHTCSS--------SCSCBCHHHHHHHHHHHHHCTTCCSC--EEE
T ss_pred cCcccccc-------------------CHHHHHHHHHcCCC--------cCCCCCHHHHHHHHHHHhhcCccCce--EEE
Confidence 88743210 00000111111110 03478999999999999987655666 899
Q ss_pred eCCC
Q 011707 378 QFTE 381 (479)
Q Consensus 378 i~~~ 381 (479)
+.++
T Consensus 255 vdgG 258 (265)
T 2o23_A 255 LDGA 258 (265)
T ss_dssp ESTT
T ss_pred ECCC
Confidence 8875
|
| >4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.1e-24 Score=203.88 Aligned_cols=229 Identities=14% Similarity=0.045 Sum_probs=166.2
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+.+++|+||||||+|+||.+++++|+++|++|++++|...... +.........+.++.++.+|+
T Consensus 25 m~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~~----------------~~~~~~~~~~~~~~~~~~~D~ 88 (271)
T 4iin_A 25 MQFTGKNVLITGASKGIGAEIAKTLASMGLKVWINYRSNAEVA----------------DALKNELEEKGYKAAVIKFDA 88 (271)
T ss_dssp CCCSCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH----------------HHHHHHHHHTTCCEEEEECCT
T ss_pred cccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHH----------------HHHHHHHHhcCCceEEEECCC
Confidence 3567899999999999999999999999999999998543211 111111112245789999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
+|.+++.++++.. ++|+||||||....... ..+++++..++++|+.|+.++++++.. .+.+ +||++||.
T Consensus 89 ~~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~isS~ 167 (271)
T 4iin_A 89 ASESDFIEAIQTIVQSDGGLSYLVNNAGVVRDKLAIKMKTEDFHHVIDNNLTSAFIGCREALKVMSKSRFG-SVVNVASI 167 (271)
T ss_dssp TCHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCH
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCcccccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCC-EEEEEech
Confidence 9999988888753 79999999998654322 335567788999999999999887744 3445 99999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +..+...|+.+|++.+.+++.++.+ .|+++++++||.|..+....
T Consensus 168 ~~~~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~---- 219 (271)
T 4iin_A 168 IGER------------------------GNMGQTNYSASKGGMIAMSKSFAYEGALRNIRFNSVTPGFIETDMNAN---- 219 (271)
T ss_dssp HHHH------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCCC--------
T ss_pred hhcC------------------------CCCCchHhHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcccCCchhh----
Confidence 5442 2234689999999999999999988 48999999999998774221
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
...... ..+........+.+++|+|++++.++..+.. .|+ ++++.++
T Consensus 220 ---------------~~~~~~---------~~~~~~~~~~~~~~p~dvA~~i~~l~s~~~~~itG~--~i~vdGG 268 (271)
T 4iin_A 220 ---------------LKDELK---------ADYVKNIPLNRLGSAKEVAEAVAFLLSDHSSYITGE--TLKVNGG 268 (271)
T ss_dssp --------------------------------CGGGCTTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ---------------hcHHHH---------HHHHhcCCcCCCcCHHHHHHHHHHHhCCCcCCCcCC--EEEeCCC
Confidence 000110 1111222345688999999999999976543 455 9999875
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-24 Score=201.25 Aligned_cols=239 Identities=13% Similarity=0.081 Sum_probs=163.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl 161 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+... .+.++.++.+|+
T Consensus 4 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~~D~ 67 (260)
T 2z1n_A 4 GIQGKLAVVTAGSSGLGFASALELARNGARLLLFSRNREKL----------------EAAASRIASLVSGAQVDIVAGDI 67 (260)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHHSTTCCEEEEECCT
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHhcCCCCeEEEEEccC
Confidence 35689999999999999999999999999999999864321 1111111111 123688999999
Q ss_pred CChHHHHHHhhh----cCCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 162 CDFEFLSESFKS----FEPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 162 ~d~~~~~~~~~~----~~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
+|+++++++++. +++|+||||||...... ...+.+++..++++|+.|+.++++++. +.+.+ +||++||..
T Consensus 68 ~~~~~v~~~~~~~~~~~gid~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~ 146 (260)
T 2z1n_A 68 REPGDIDRLFEKARDLGGADILVYSTGGPRPGRFMELGVEDWDESYRLLARSAVWVGRRAAEQMVEKGWG-RMVYIGSVT 146 (260)
T ss_dssp TCHHHHHHHHHHHHHTTCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCE-EEEEECCGG
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEECchh
Confidence 999998888763 25999999999754322 233556788899999999988877664 44555 999999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+.. ..+...|+.+|++.+.+++.++.++ |+++++++||.|+++.........
T Consensus 147 ~~~~------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~~~~ 202 (260)
T 2z1n_A 147 LLRP------------------------WQDLALSNIMRLPVIGVVRTLALELAPHGVTVNAVLPSLILTDRVRSLAEER 202 (260)
T ss_dssp GTSC------------------------CTTBHHHHHHTHHHHHHHHHHHHHHGGGTEEEEEEEECHHHHCCCC------
T ss_pred hcCC------------------------CCCCchhHHHHHHHHHHHHHHHHHHhhhCeEEEEEEECCcccchhhhhhhhh
Confidence 6532 2336799999999999999999885 899999999999988643100000
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. ....+.... ....+........+.+++|+|++++.++..+.. .|+ ++++.++
T Consensus 203 ------------~-~~~~~~~~~----~~~~~~~~~p~~r~~~~~dva~~v~~l~s~~~~~~tG~--~i~vdGG 257 (260)
T 2z1n_A 203 ------------A-RRSGITVEE----ALKSMASRIPMGRVGKPEELASVVAFLASEKASFITGA--VIPVDGG 257 (260)
T ss_dssp ----------------------------------CCTTSSCCCHHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred ------------h-cccCCcHHH----HHHHHHhcCCCCCccCHHHHHHHHHHHhCccccCCCCC--EEEeCCC
Confidence 0 000000000 000011111223578999999999999876433 455 8998875
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=206.00 Aligned_cols=231 Identities=14% Similarity=0.084 Sum_probs=169.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+....+.++.++.+|++
T Consensus 24 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~Dv~ 87 (277)
T 4fc7_A 24 LLRDKVAFITGGGSGIGFRIAEIFMRHGCHTVIASRSLPRV----------------LTAARKLAGATGRRCLPLSMDVR 87 (277)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCHHHH----------------HHHHHHHHHHHSSCEEEEECCTT
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHHhcCCcEEEEEcCCC
Confidence 46789999999999999999999999999999999864321 11222222223467899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|.++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++.. .+.+ +||++||..
T Consensus 88 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~ 166 (277)
T 4fc7_A 88 APPAVMAAVDQALKEFGRIDILINCAAGNFLCPAGALSFNAFKTVMDIDTSGTFNVSRVLYEKFFRDHGG-VIVNITATL 166 (277)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCE-EEEEECCSH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEECchh
Confidence 999988887754 7999999999754332 3345667888999999999999998843 3344 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.||++.+.+++.++.++ |+++++++||.|.++.....
T Consensus 167 ~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~---- 218 (277)
T 4fc7_A 167 GNR------------------------GQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRR---- 218 (277)
T ss_dssp HHH------------------------TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBSSSHHHHH----
T ss_pred hCC------------------------CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCEecchhhhh----
Confidence 442 12336889999999999999999885 89999999999988731100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
+ .. ............ ....+.+++|+|++++.++..... .|+ ++++.++
T Consensus 219 -~----------~~-~~~~~~~~~~~~---------p~~r~~~p~dvA~~v~fL~s~~~~~itG~--~i~vdGG 269 (277)
T 4fc7_A 219 -L----------GG-PQASLSTKVTAS---------PLQRLGNKTEIAHSVLYLASPLASYVTGA--VLVADGG 269 (277)
T ss_dssp -H----------SC-CHHHHHHHHHTS---------TTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -c----------cC-CHHHHHHHhccC---------CCCCCcCHHHHHHHHHHHcCCccCCcCCC--EEEECCC
Confidence 0 00 011222222222 233578999999999999975443 455 9999875
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-24 Score=203.72 Aligned_cols=228 Identities=14% Similarity=0.085 Sum_probs=163.5
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|+
T Consensus 40 ~~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~Dl 102 (285)
T 2c07_A 40 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKSC----------------DSVVDEIKS-FGYESSGYAGDV 102 (285)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHHH----------------HHHHHHHHT-TTCCEEEEECCT
T ss_pred ccCCCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEcCCHHHH----------------HHHHHHHHh-cCCceeEEECCC
Confidence 345789999999999999999999999999999987653311 111111211 135788999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~ 231 (479)
+|.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++. +.+.+ +||++||.
T Consensus 103 ~d~~~v~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~-~iv~isS~ 181 (285)
T 2c07_A 103 SKKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYG-RIINISSI 181 (285)
T ss_dssp TCHHHHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCE-EEEEECCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC-EEEEECCh
Confidence 9999998888642 6999999999764322 223455677889999999888888775 34555 99999997
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+.. ..+...|+.+|++.+.+++.++.++ |+++++++||.|.++....
T Consensus 182 ~~~~~------------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~---- 233 (285)
T 2c07_A 182 VGLTG------------------------NVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDK---- 233 (285)
T ss_dssp HHHHC------------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC---------
T ss_pred hhccC------------------------CCCCchHHHHHHHHHHHHHHHHHHHHHhCcEEEEEEeCcEecCchhh----
Confidence 54421 1236789999999999999998875 8999999999998875321
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
....+........+ ...+++++|+|++++.++..+.. .|+ ++++.++
T Consensus 234 ---------------~~~~~~~~~~~~~~---------~~~~~~~~dvA~~~~~l~~~~~~~~~G~--~i~v~gG 282 (285)
T 2c07_A 234 ---------------ISEQIKKNIISNIP---------AGRMGTPEEVANLACFLSSDKSGYINGR--VFVIDGG 282 (285)
T ss_dssp ---------------CCHHHHHHHHTTCT---------TSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ---------------cCHHHHHHHHhhCC---------CCCCCCHHHHHHHHHHHhCCCcCCCCCC--EEEeCCC
Confidence 00122222222211 23579999999999999976433 455 9999875
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-24 Score=203.55 Aligned_cols=230 Identities=15% Similarity=0.096 Sum_probs=160.1
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+.+++|+||||||+|+||.+++++|+++|++|++++|..... +......+.++.++.+|+
T Consensus 5 m~l~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~--------------------~~~~~~~~~~~~~~~~D~ 64 (261)
T 3n74_A 5 MSLEGKVALITGAGSGFGEGMAKRFAKGGAKVVIVDRDKAGA--------------------ERVAGEIGDAALAVAADI 64 (261)
T ss_dssp CTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH--------------------HHHHHHHCTTEEEEECCT
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHH--------------------HHHHHHhCCceEEEEecC
Confidence 456789999999999999999999999999999999864321 111111245789999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHHHc----C---CcceEEE
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----R---QECHLVK 227 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g---~~~~~V~ 227 (479)
+|.++++++++.. ++|+||||||..... ....+++++..++++|+.|+.++++++... + ...+||+
T Consensus 65 ~~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~iv~ 144 (261)
T 3n74_A 65 SKEADVDAAVEAALSKFGKVDILVNNAGIGHKPQNAELVEPEEFDRIVGVNVRGVYLMTSKLIPHFKENGAKGQECVILN 144 (261)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCCCeEEEE
Confidence 9999998888754 799999999976522 222356677889999999999998887432 1 1237999
Q ss_pred eeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCc
Q 011707 228 LGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDE 304 (479)
Q Consensus 228 ~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~ 304 (479)
+||...+. +......|+.+|++.+.+++.++.+ .|+++++++||.+..+....
T Consensus 145 isS~~~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~ 200 (261)
T 3n74_A 145 VASTGAGR------------------------PRPNLAWYNATKGWVVSVTKALAIELAPAKIRVVALNPVAGETPLLTT 200 (261)
T ss_dssp ECCTTTTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------
T ss_pred eCchhhcC------------------------CCCCccHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccChhhhh
Confidence 99965442 2234678999999999999999988 48999999999998875321
Q ss_pred hhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 305 TAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
+.... .......+.+......+++++|+|++++.++..... .|+ ++++.++
T Consensus 201 -----------------------~~~~~-~~~~~~~~~~~~~~~~~~~~~dva~~~~~l~s~~~~~itG~--~i~vdgG 253 (261)
T 3n74_A 201 -----------------------FMGED-SEEIRKKFRDSIPMGRLLKPDDLAEAAAFLCSPQASMITGV--ALDVDGG 253 (261)
T ss_dssp ----------------------------------------CTTSSCCCHHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred -----------------------hcccC-cHHHHHHHhhcCCcCCCcCHHHHHHHHHHHcCCcccCcCCc--EEEecCC
Confidence 00000 000011112223445789999999999999865443 455 9999885
|
| >2ag5_A DHRS6, dehydrogenase/reductase (SDR family) member 6; protein-CO-factor complex, structural genomics, structural G consortium, SGC, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.7e-24 Score=199.45 Aligned_cols=228 Identities=12% Similarity=0.081 Sum_probs=164.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... +...+. .++.++.+|++|
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~--------------------~~~~~~--~~~~~~~~D~~~ 61 (246)
T 2ag5_A 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESKL--------------------QELEKY--PGIQTRVLDVTK 61 (246)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH--------------------GGGGGS--TTEEEEECCTTC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH--------------------HHHHhc--cCceEEEeeCCC
Confidence 5689999999999999999999999999999999854311 111111 268889999999
Q ss_pred hHHHHHHhhhc-CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccccccCC
Q 011707 164 FEFLSESFKSF-EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGEYGTP 237 (479)
Q Consensus 164 ~~~~~~~~~~~-~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v~g~~ 237 (479)
+++++++++.+ ++|+||||||...... ...+++++...+++|+.|+.++++++.. .+.+ +||++||...+...
T Consensus 62 ~~~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~~~ 140 (246)
T 2ag5_A 62 KKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSG-NIINMSSVASSVKG 140 (246)
T ss_dssp HHHHHHHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCSBTTTBC
T ss_pred HHHHHHHHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-eEEEEechHhCcCC
Confidence 99999887654 6999999999765332 2235566788899999999999998753 4555 99999996544211
Q ss_pred CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
..+...|+.+|++.+.+++.++.++ |++++++|||.|++|..... +...
T Consensus 141 -----------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~-----~~~~ 192 (246)
T 2ag5_A 141 -----------------------VVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQER-----IQAR 192 (246)
T ss_dssp -----------------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHH-----HHHS
T ss_pred -----------------------CCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeeCcCcCcchhhh-----hhcc
Confidence 0136789999999999999999875 89999999999998742110 0000
Q ss_pred cCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. ........+....+ ...+.+++|+|++++.++..+.. .|+ ++++.++
T Consensus 193 ----~----~~~~~~~~~~~~~~---------~~~~~~~~dvA~~v~~l~s~~~~~~tG~--~i~vdgG 242 (246)
T 2ag5_A 193 ----G----NPEEARNDFLKRQK---------TGRFATAEEIAMLCVYLASDESAYVTGN--PVIIDGG 242 (246)
T ss_dssp ----S----SHHHHHHHHHHTCT---------TSSCEEHHHHHHHHHHHHSGGGTTCCSC--EEEECTT
T ss_pred ----c----CcHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHhCccccCCCCC--EEEECCC
Confidence 0 00111222222111 12478999999999999975443 355 8998875
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-24 Score=207.22 Aligned_cols=233 Identities=14% Similarity=0.114 Sum_probs=169.0
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..+++|++|||||+|+||.+++++|+++|++|+++++..... ..+.+.......+.++.++.+|+
T Consensus 45 ~~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~Dv 109 (294)
T 3r3s_A 45 GRLKDRKALVTGGDSGIGRAAAIAYAREGADVAINYLPAEEE---------------DAQQVKALIEECGRKAVLLPGDL 109 (294)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCGGGHH---------------HHHHHHHHHHHTTCCEEECCCCT
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchh---------------HHHHHHHHHHHcCCcEEEEEecC
Confidence 346799999999999999999999999999999988753211 00111111112246788999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHHcCC-cceEEEeecccc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ-ECHLVKLGTMGE 233 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~-~~~~V~~SS~~v 233 (479)
+|.++++++++.. ++|+||||||.... .....+.+++.+++++|+.|+.++++++..... +.+||++||...
T Consensus 110 ~d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS~~~ 189 (294)
T 3r3s_A 110 SDESFARSLVHKAREALGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSSIQA 189 (294)
T ss_dssp TSHHHHHHHHHHHHHHHTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCGGG
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECChhh
Confidence 9999988887643 79999999997542 223346667889999999999999999976531 238999999776
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+.. ......|+.||++.+.+++.++.++ |+++++++||.|+++......
T Consensus 190 ~~~------------------------~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~t~~~~~~~---- 241 (294)
T 3r3s_A 190 YQP------------------------SPHLLDYAATKAAILNYSRGLAKQVAEKGIRVNIVAPGPIWTALQISGG---- 241 (294)
T ss_dssp TSC------------------------CTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHTTT----
T ss_pred ccC------------------------CCCchHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCccccccccC----
Confidence 632 2346889999999999999999886 899999999999886310000
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
... .... .+........+..++|+|++++.++..... .|+ ++++.++
T Consensus 242 ---------~~~----~~~~---------~~~~~~p~~r~~~p~dvA~~v~~L~s~~~~~itG~--~i~vdGG 290 (294)
T 3r3s_A 242 ---------QTQ----DKIP---------QFGQQTPMKRAGQPAELAPVYVYLASQESSYVTAE--VHGVCGG 290 (294)
T ss_dssp ---------SCG----GGST---------TTTTTSTTSSCBCGGGGHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ---------CCH----HHHH---------HHHhcCCCCCCcCHHHHHHHHHHHhCccccCCCCC--EEEECCC
Confidence 000 0000 011222344678899999999999876543 355 9999875
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=207.58 Aligned_cols=228 Identities=12% Similarity=0.033 Sum_probs=167.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 25 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~Dv~ 87 (270)
T 3ftp_A 25 TLDKQVAIVTGASRGIGRAIALELARRGAMVIGTATTEAGA----------------EGIGAAFKQ-AGLEGRGAVLNVN 87 (270)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHH----------------HHHHHHHHH-HTCCCEEEECCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEEEeCC
Confidence 46789999999999999999999999999999999864321 111112211 2357889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|.++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++.. .+.+ +||++||..
T Consensus 88 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~ 166 (270)
T 3ftp_A 88 DATAVDALVESTLKEFGALNVLVNNAGITQDQLAMRMKDDEWDAVIDTNLKAVFRLSRAVLRPMMKARGG-RIVNITSVV 166 (270)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEECchh
Confidence 999998888754 7999999999765432 2335567888999999999999998853 3444 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +..+...|+.||++.+.+++.++.++ |+++++++||.|..+....
T Consensus 167 ~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~----- 217 (270)
T 3ftp_A 167 GSA------------------------GNPGQVNYAAAKAGVAGMTRALAREIGSRGITVNCVAPGFIDTDMTKG----- 217 (270)
T ss_dssp HHH------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSHHHHH-----
T ss_pred hCC------------------------CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeCCCcCcchhh-----
Confidence 442 22336899999999999999999884 8999999999997763110
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
........+... .....+.+++|+|++++.++..... .|+ ++++.++.
T Consensus 218 --------------~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~L~s~~~~~itG~--~i~vdGG~ 267 (270)
T 3ftp_A 218 --------------LPQEQQTALKTQ---------IPLGRLGSPEDIAHAVAFLASPQAGYITGT--TLHVNGGM 267 (270)
T ss_dssp --------------SCHHHHHHHHTT---------CTTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTS
T ss_pred --------------cCHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHhCCCcCCccCc--EEEECCCc
Confidence 001112222222 2234678999999999999865433 455 99998853
|
| >2ph3_A 3-oxoacyl-[acyl carrier protein] reductase; TTHA0415, structural genomics, southea collaboratory for structural genomics, secsg; 1.91A {Thermus thermophilus HB8} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-24 Score=202.64 Aligned_cols=224 Identities=13% Similarity=0.122 Sum_probs=158.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEE-ecccccccccccCCCCCCccchhhhhhhhhcccCCCceeE-EEcccCC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIV-DSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIEL-YIGDICD 163 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-v~~Dl~d 163 (479)
+|+||||||+|+||.+++++|+++|++|+++ +|..... .+..+.+.. .+.++.. +.+|++|
T Consensus 1 ~k~vlITGasggiG~~~a~~l~~~G~~v~~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~~D~~~ 63 (245)
T 2ph3_A 1 MRKALITGASRGIGRAIALRLAEDGFALAIHYGQNREKA----------------EEVAEEARR-RGSPLVAVLGANLLE 63 (245)
T ss_dssp CCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESSCHHHH----------------HHHHHHHHH-TTCSCEEEEECCTTS
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHH----------------HHHHHHHHh-cCCceEEEEeccCCC
Confidence 4789999999999999999999999999998 5543211 111111111 1245666 8999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v 233 (479)
.++++++++.. ++|+||||||...... ...+.+++...+++|+.|+.++++++ ++.+.+ +||++||...
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~g~~~l~~~~~~~~~~~~~~-~iv~~sS~~~ 142 (245)
T 2ph3_A 64 AEAATALVHQAAEVLGGLDTLVNNAGITRDTLLVRMKDEDWEAVLEANLSAVFRTTREAVKLMMKARFG-RIVNITSVVG 142 (245)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC-EEEEEeChhh
Confidence 99988887632 7999999999764322 22344567788999999966666554 455666 9999999643
Q ss_pred -ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 234 -YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 234 -~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
++. .+...|+.+|++.+.+++.+++++ |++++++|||.++++....
T Consensus 143 ~~~~-------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~----- 192 (245)
T 2ph3_A 143 ILGN-------------------------PGQANYVASKAGLIGFTRAVAKEYAQRGITVNAVAPGFIETEMTER----- 192 (245)
T ss_dssp HHCC-------------------------SSBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT-----
T ss_pred ccCC-------------------------CCCcchHHHHHHHHHHHHHHHHHHHHcCeEEEEEEEEeecCcchhh-----
Confidence 332 236789999999999999999886 8999999999998874210
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
....+...+..+.+ ...+++++|+|++++.++..+.. .|+ +|++.++.
T Consensus 193 --------------~~~~~~~~~~~~~~---------~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~gg~ 242 (245)
T 2ph3_A 193 --------------LPQEVKEAYLKQIP---------AGRFGRPEEVAEAVAFLVSEKAGYITGQ--TLCVDGGL 242 (245)
T ss_dssp --------------SCHHHHHHHHHTCT---------TCSCBCHHHHHHHHHHHTSGGGTTCCSC--EEEESTTC
T ss_pred --------------cCHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCcccccccCC--EEEECCCC
Confidence 00112222222211 24678999999999999876432 355 99998864
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=9.2e-24 Score=201.00 Aligned_cols=236 Identities=14% Similarity=0.120 Sum_probs=164.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl 161 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+... .+.++.++.+|+
T Consensus 10 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~~D~ 73 (267)
T 1iy8_A 10 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGL----------------EASKAAVLETAPDAEVLTTVADV 73 (267)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHHCTTCCEEEEECCT
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHhhcCCceEEEEEccC
Confidence 35789999999999999999999999999999999864321 1111111111 135788999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCc-c-cccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeec
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSA-P-YSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS 230 (479)
+|+++++++++.. ++|+||||||.... . ....+.+++.+++++|+.|+.++++++ ++.+.+ +||++||
T Consensus 74 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS 152 (267)
T 1iy8_A 74 SDEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSG-MVVNTAS 152 (267)
T ss_dssp TSHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCC-EEEEEcc
Confidence 9999998888743 69999999997643 2 223355677889999999998776655 444555 9999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
...+. +..+...|+.||++.+.+++.++.++ |+++++++||.|+++......
T Consensus 153 ~~~~~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~- 207 (267)
T 1iy8_A 153 VGGIR------------------------GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVENSM- 207 (267)
T ss_dssp GGGTS------------------------BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHHHHH-
T ss_pred hhhcc------------------------CCCCCccHHHHHHHHHHHHHHHHHHHHhcCeEEEEEEeCCCcCcchhccc-
Confidence 65442 11236799999999999999998874 899999999999876311000
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.... ..........+.... ....+.+++|+|++++.++..+.. .|+ ++++.++
T Consensus 208 --~~~~--------~~~~~~~~~~~~~~~---------p~~r~~~~~dvA~~v~~l~s~~~~~~tG~--~i~vdGG 262 (267)
T 1iy8_A 208 --KQLD--------PENPRKAAEEFIQVN---------PSKRYGEAPEIAAVVAFLLSDDASYVNAT--VVPIDGG 262 (267)
T ss_dssp --HHHC--------TTCHHHHHHHHHTTC---------TTCSCBCHHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred --cccC--------hhhhhhHHHHHhccC---------CCCCCcCHHHHHHHHHHHcCccccCCCCC--EEEECCC
Confidence 0000 000111111222111 223578999999999999875433 455 8999875
|
| >2dtx_A Glucose 1-dehydrogenase related protein; rossmann fold, oxidoreductase; HET: BMA; 1.60A {Thermoplasma acidophilum} PDB: 2dtd_A* 2dte_A* 2zk7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.5e-24 Score=204.44 Aligned_cols=226 Identities=11% Similarity=0.022 Sum_probs=162.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|.... +.++.++.+|++|
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~----------------------------~~~~~~~~~Dl~~ 57 (264)
T 2dtx_A 6 LRDKVVIVTGASMGIGRAIAERFVDEGSKVIDLSIHDPG----------------------------EAKYDHIECDVTN 57 (264)
T ss_dssp GTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSCCC----------------------------SCSSEEEECCTTC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEecCccc----------------------------CCceEEEEecCCC
Confidence 468999999999999999999999999999999875431 1467889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++... +.+ +||++||...
T Consensus 58 ~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~ 136 (264)
T 2dtx_A 58 PDQVKASIDHIFKEYGSISVLVNNAGIESYGKIESMSMGEWRRIIDVNLFGYYYASKFAIPYMIRSRDP-SIVNISSVQA 136 (264)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSC-EEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCc-EEEEECCchh
Confidence 99998887743 6999999999754322 22355567889999999999999988653 444 9999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhC--CceEEeecCeeecCCCCchhhhHhh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG--IRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--l~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
+. +..+...|+.||++.+.+++.++.+++ +++++++||.|.++.... .
T Consensus 137 ~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~vn~v~PG~v~t~~~~~------~ 186 (264)
T 2dtx_A 137 SI------------------------ITKNASAYVTSKHAVIGLTKSIALDYAPLLRCNAVCPATIDTPLVRK------A 186 (264)
T ss_dssp TS------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCSHHHHH------H
T ss_pred cc------------------------CCCCchhHHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCCCcCcchhh------h
Confidence 53 223468999999999999999998875 999999999997653110 0
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.... .+............+... .....+++++|+|++++.++..+.. .|+ ++++.++
T Consensus 187 ~~~~--~~~~~~~~~~~~~~~~~~---------~p~~~~~~p~dvA~~v~~l~s~~~~~~tG~--~i~vdGG 245 (264)
T 2dtx_A 187 AELE--VGSDPMRIEKKISEWGHE---------HPMQRIGKPQEVASAVAFLASREASFITGT--CLYVDGG 245 (264)
T ss_dssp HHHH--HCSCHHHHHHHHHHHHHH---------STTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred hhcc--cccCchhhHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCchhcCCCCc--EEEECCC
Confidence 0000 000000000111111111 1224589999999999999976433 354 8998875
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-24 Score=200.49 Aligned_cols=230 Identities=14% Similarity=0.091 Sum_probs=168.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+. .+.++.++.+|++
T Consensus 5 ~l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~----~~~~~~~~~~Dv~ 64 (255)
T 4eso_A 5 NYQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNI----------------ARIREE----FGPRVHALRSDIA 64 (255)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHH----HGGGEEEEECCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHH----hCCcceEEEccCC
Confidence 35789999999999999999999999999999999864321 111111 1357899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeecccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYG 235 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g 235 (479)
|.++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++...- .+.+||++||...+.
T Consensus 65 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~ 144 (255)
T 4eso_A 65 DLNEIAVLGAAAGQTLGAIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTSSVADEG 144 (255)
T ss_dssp CHHHHHHHHHHHHHHHSSEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCGGGSS
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEECChhhcC
Confidence 999988877643 6999999999865433 233666788899999999999999997641 123899999976542
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
+..+...|+.||++.+.+++.++.++ |+++++++||.|..|......
T Consensus 145 ------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~------ 194 (255)
T 4eso_A 145 ------------------------GHPGMSVYSASKAALVSFASVLAAELLPRGIRVNSVSPGFIDTPTKGVAG------ 194 (255)
T ss_dssp ------------------------BCTTBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEEECSBCCSSTTCTT------
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHHhhhCcEEEEEecCcccCccccccc------
Confidence 22346899999999999999999985 899999999999988543210
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
........+....... .....+.+++|+|++++.++.. .. .|+ ++++.++
T Consensus 195 -------~~~~~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~L~s~-~~~itG~--~i~vdGG 246 (255)
T 4eso_A 195 -------ITEAERAEFKTLGDNI---------TPMKRNGTADEVARAVLFLAFE-ATFTTGA--KLAVDGG 246 (255)
T ss_dssp -------SCHHHHHHHHHHHHHH---------STTSSCBCHHHHHHHHHHHHHT-CTTCCSC--EEEESTT
T ss_pred -------CChhhHHHHHHHHhcc---------CCCCCCcCHHHHHHHHHHHcCc-CcCccCC--EEEECCC
Confidence 0001111222222221 1234567999999999998875 33 355 9999885
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=201.28 Aligned_cols=230 Identities=14% Similarity=0.017 Sum_probs=169.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 29 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~Dl~ 91 (276)
T 3r1i_A 29 DLSGKRALITGASTGIGKKVALAYAEAGAQVAVAARHSDAL----------------QVVADEIAG-VGGKALPIRCDVT 91 (276)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESSGGGG----------------HHHHHHHHH-TTCCCEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCeEEEEEcCCC
Confidence 46789999999999999999999999999999999864321 111122211 2357889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||....... ..+.+++.+++++|+.|+.++++++.. .+.+.+||++||..
T Consensus 92 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~~g~iv~isS~~ 171 (276)
T 3r1i_A 92 QPDQVRGMLDQMTGELGGIDIAVCNAGIVSVQAMLDMPLEEFQRIQDTNVTGVFLTAQAAARAMVDQGLGGTIITTASMS 171 (276)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECchH
Confidence 999999888754 79999999998654332 335667888999999999999998754 33323899999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+... ...+...|+.||++.+.+++.++.+ .|+++++++||.|..+.....
T Consensus 172 ~~~~~----------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~---- 225 (276)
T 3r1i_A 172 GHIIN----------------------IPQQVSHYCTSKAAVVHLTKAMAVELAPHQIRVNSVSPGYIRTELVEPL---- 225 (276)
T ss_dssp GTSCC----------------------CSSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSTTTGGG----
T ss_pred hcccC----------------------CCCCcchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCccccc----
Confidence 43211 1124678999999999999999998 489999999999988754321
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
..+........ ....+.+++|+|++++.++..... .|+ ++++.++.
T Consensus 226 ----------------~~~~~~~~~~~---------p~~r~~~pedvA~~v~fL~s~~~~~itG~--~i~vdGG~ 273 (276)
T 3r1i_A 226 ----------------ADYHALWEPKI---------PLGRMGRPEELTGLYLYLASAASSYMTGS--DIVIDGGY 273 (276)
T ss_dssp ----------------GGGHHHHGGGS---------TTSSCBCGGGSHHHHHHHHSGGGTTCCSC--EEEESTTT
T ss_pred ----------------hHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCccccCccCc--EEEECcCc
Confidence 11111222211 223578899999999999976443 455 99998764
|
| >3t4x_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, center for structural genomics of infec diseases, csgid; 2.80A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=204.12 Aligned_cols=243 Identities=9% Similarity=0.058 Sum_probs=168.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl 161 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+... .+..+..+.+|+
T Consensus 7 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~~D~ 70 (267)
T 3t4x_A 7 QLKGKTALVTGSTAGIGKAIATSLVAEGANVLINGRREENV----------------NETIKEIRAQYPDAILQPVVADL 70 (267)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSHHHH----------------HHHHHHHHHHCTTCEEEEEECCT
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHhhCCCceEEEEecCC
Confidence 46789999999999999999999999999999999865421 1122222221 134678899999
Q ss_pred CChHHHHHHhhhc-CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccccc
Q 011707 162 CDFEFLSESFKSF-EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGEYG 235 (479)
Q Consensus 162 ~d~~~~~~~~~~~-~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v~g 235 (479)
+|.++++++++.+ ++|+||||||....... ..+.+++.+++++|+.|+.++++++.. .+.+ +||++||...+.
T Consensus 71 ~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~ 149 (267)
T 3t4x_A 71 GTEQGCQDVIEKYPKVDILINNLGIFEPVEYFDIPDEDWFKLFEVNIMSGVRLTRSYLKKMIERKEG-RVIFIASEAAIM 149 (267)
T ss_dssp TSHHHHHHHHHHCCCCSEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTEE-EEEEECCGGGTS
T ss_pred CCHHHHHHHHHhcCCCCEEEECCCCCCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC-EEEEEcchhhcc
Confidence 9999999998876 69999999998654332 335567888899999998888777643 4444 999999976542
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
+..+...|+.||++.+.+++.++.++ |++++++.||.|..+... .+.
T Consensus 150 ------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~------~~~ 199 (267)
T 3t4x_A 150 ------------------------PSQEMAHYSATKTMQLSLSRSLAELTTGTNVTVNTIMPGSTLTEGVE------TML 199 (267)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECCBCCHHHH------HHH
T ss_pred ------------------------CCCcchHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCeecCccHH------HHH
Confidence 22347899999999999999999886 699999999998776211 000
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
+....... .............. ........+.+++|+|++++.++..... .|+ ++++.++
T Consensus 200 ~~~~~~~~--~~~~~~~~~~~~~~-----~~~~~~~r~~~pedvA~~v~fL~s~~~~~itG~--~i~vdGG 261 (267)
T 3t4x_A 200 NSLYPNEQ--LTIEEAEKRFMKEN-----RPTSIIQRLIRPEEIAHLVTFLSSPLSSAINGS--ALRIDGG 261 (267)
T ss_dssp HHSSTTSC--CCHHHHHHHHHHHH-----CTTCSSCSCBCTHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred hhcCcccC--CCHHHHHHHHhhcc-----CCcccccCccCHHHHHHHHHHHcCccccCccCC--eEEECCC
Confidence 00000000 00011111111100 0112245789999999999999875443 455 9999885
|
| >2yut_A Putative short-chain oxidoreductase; alpha and beta proteins (A/B), NAD(P)-binding rossmann-fold structural genomics, NPPSFA; HET: NAP; 2.20A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-25 Score=201.41 Aligned_cols=196 Identities=16% Similarity=0.066 Sum_probs=149.9
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+||||||+|+||++++++|+++ +|++++|..... .+..... .. .++.+|++|+++
T Consensus 1 k~vlVtGasg~iG~~la~~l~~~--~V~~~~r~~~~~----------------~~~~~~~-----~~-~~~~~D~~~~~~ 56 (207)
T 2yut_A 1 MRVLITGATGGLGGAFARALKGH--DLLLSGRRAGAL----------------AELAREV-----GA-RALPADLADELE 56 (207)
T ss_dssp CEEEEETTTSHHHHHHHHHTTTS--EEEEECSCHHHH----------------HHHHHHH-----TC-EECCCCTTSHHH
T ss_pred CEEEEEcCCcHHHHHHHHHHHhC--CEEEEECCHHHH----------------HHHHHhc-----cC-cEEEeeCCCHHH
Confidence 58999999999999999999998 999998854311 0111111 11 788899999999
Q ss_pred HHHHhhh-cCCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCC
Q 011707 167 LSESFKS-FEPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEG 244 (479)
Q Consensus 167 ~~~~~~~-~~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~ 244 (479)
++++++. .++|+||||||...... ...+.+++..++++|+.|+.++++++++.+.+ +||++||...|.
T Consensus 57 ~~~~~~~~~~id~vi~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~-~iv~~sS~~~~~--------- 126 (207)
T 2yut_A 57 AKALLEEAGPLDLLVHAVGKAGRASVREAGRDLVEEMLAAHLLTAAFVLKHARFQKGA-RAVFFGAYPRYV--------- 126 (207)
T ss_dssp HHHHHHHHCSEEEEEECCCCCCCBCSCC---CHHHHHHHHHHHHHHHHHHHCCEEEEE-EEEEECCCHHHH---------
T ss_pred HHHHHHhcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHhcCCc-EEEEEcChhhcc---------
Confidence 9998873 26899999999754322 22345567788999999999999999766655 999999987763
Q ss_pred ceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 245 YITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
+..+...|+.+|++.|.+++.++.+ .|++++++|||.++++...
T Consensus 127 ---------------~~~~~~~Y~~sK~a~~~~~~~~~~~~~~~gi~v~~v~pg~v~t~~~~------------------ 173 (207)
T 2yut_A 127 ---------------QVPGFAAYAAAKGALEAYLEAARKELLREGVHLVLVRLPAVATGLWA------------------ 173 (207)
T ss_dssp ---------------SSTTBHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCCCBCSGGGG------------------
T ss_pred ---------------CCCCcchHHHHHHHHHHHHHHHHHHHhhhCCEEEEEecCcccCCCcc------------------
Confidence 2234789999999999999999888 5899999999999987310
Q ss_pred cchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
+.+...+.+++++|+|++++.+++++..
T Consensus 174 --------------------~~~~~~~~~~~~~dva~~~~~~~~~~~~ 201 (207)
T 2yut_A 174 --------------------PLGGPPKGALSPEEAARKVLEGLFREPV 201 (207)
T ss_dssp --------------------GGTSCCTTCBCHHHHHHHHHHHHC--CC
T ss_pred --------------------ccCCCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 0112346899999999999999987654
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=202.57 Aligned_cols=228 Identities=15% Similarity=0.191 Sum_probs=164.9
Q ss_pred CCCcEEEEEcCC--chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGD--GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|+||||||+ |+||.+++++|+++|++|++++|... . .+.++.+.... ....++.+|+
T Consensus 7 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~-~----------------~~~~~~l~~~~-~~~~~~~~D~ 68 (265)
T 1qsg_A 7 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDK-L----------------KGRVEEFAAQL-GSDIVLQCDV 68 (265)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTT-T----------------HHHHHHHHHHT-TCCCEEECCT
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEcCcHH-H----------------HHHHHHHHHhc-CCcEEEEccC
Confidence 467899999999 99999999999999999999988541 0 01112221111 2347899999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCc-----cccc-ccccccchhhhhhHHHHHHHHHHHHHcCC-cceEEEee
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSM-IDRSRAVFTQHNNVIGTLNVLFAMKEFRQ-ECHLVKLG 229 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~-~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~-~~~~V~~S 229 (479)
+|+++++++++.. ++|+||||||.... +... .+.+++..++++|+.|+.++++++...-. ..+||++|
T Consensus 69 ~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 148 (265)
T 1qsg_A 69 AEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTLS 148 (265)
T ss_dssp TCHHHHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCccccCCCccccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEc
Confidence 9999998888753 68999999997542 1122 34556788999999999999999976521 13999999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|...+. +..+...|+.||++.+.+++.++.++ |+++++++||.|+++.....
T Consensus 149 S~~~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~- 203 (265)
T 1qsg_A 149 YLGAER------------------------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI- 203 (265)
T ss_dssp CGGGTS------------------------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS-
T ss_pred chhhcc------------------------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCccchhhcc-
Confidence 965542 11235789999999999999999886 89999999999999853210
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.....+...+..+.+ ...+.+++|+|++++.++..... .|+ +|++.++
T Consensus 204 ----------------~~~~~~~~~~~~~~p---------~~~~~~~~dva~~v~~l~s~~~~~~tG~--~~~vdgG 253 (265)
T 1qsg_A 204 ----------------KDFRKMLAHCEAVTP---------IRRTVTIEDVGNSAAFLCSDLSAGISGE--VVHVDGG 253 (265)
T ss_dssp ----------------TTHHHHHHHHHHHST---------TSSCCCHHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred ----------------cccHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHhCchhcCccCC--EEEECCC
Confidence 001222222222222 12468999999999999875433 355 9999885
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=99.92 E-value=4.6e-24 Score=200.14 Aligned_cols=223 Identities=15% Similarity=0.095 Sum_probs=161.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEE-ecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIV-DSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
+|+||||||+|+||.+++++|+++|++|+++ +|..... .+..+.+.. .+.++.++.+|++|+
T Consensus 1 ~k~vlVTGasggiG~~la~~l~~~G~~v~~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~~~ 63 (244)
T 1edo_A 1 SPVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKAA----------------EEVSKQIEA-YGGQAITFGGDVSKE 63 (244)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH----------------HHHHHHHHH-HTCEEEEEECCTTSH
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHH----------------HHHHHHHHh-cCCcEEEEeCCCCCH
Confidence 5799999999999999999999999999985 5543211 111111111 134788999999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc-
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE- 233 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v- 233 (479)
++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++.+ .+.+ +||++||...
T Consensus 64 ~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~~sS~~~~ 142 (244)
T 1edo_A 64 ADVEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKG-RIINIASVVGL 142 (244)
T ss_dssp HHHHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTHHH
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCCCCCcCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCC-EEEEECChhhc
Confidence 9998888743 6999999999765322 2234456778899999999999998865 3555 9999999644
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
++. .+...|+.+|++.+.+++.++.++ |++++++|||.++++....
T Consensus 143 ~~~-------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------ 191 (244)
T 1edo_A 143 IGN-------------------------IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTAK------ 191 (244)
T ss_dssp HCC-------------------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHHT------
T ss_pred CCC-------------------------CCCccchhhHHHHHHHHHHHHHHhhhcCCEEEEEeeCccccchhhh------
Confidence 332 236789999999999999998874 8999999999998874210
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC---CCCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA---QPGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~---~~g~~~~~ni~~~ 381 (479)
....+........ ....+++++|+|++++.++..+. ..|+ +|++.++
T Consensus 192 -------------~~~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~~~~~~~~~~G~--~~~v~gG 241 (244)
T 1edo_A 192 -------------LGEDMEKKILGTI---------PLGRTGQPENVAGLVEFLALSPAASYITGQ--AFTIDGG 241 (244)
T ss_dssp -------------TCHHHHHHHHTSC---------TTCSCBCHHHHHHHHHHHHHCSGGGGCCSC--EEEESTT
T ss_pred -------------cChHHHHHHhhcC---------CCCCCCCHHHHHHHHHHHhCCCccCCcCCC--EEEeCCC
Confidence 0112222222221 12357899999999999985432 2355 9999875
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=201.65 Aligned_cols=228 Identities=14% Similarity=0.087 Sum_probs=164.9
Q ss_pred CCCcEEEEEcCC--chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGD--GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|+||||||+ |+||.+++++|+++|++|++++|.... .+.++.+.... .++.++.+|+
T Consensus 19 l~~k~vlVTGas~~~gIG~~ia~~l~~~G~~V~~~~r~~~~-----------------~~~~~~l~~~~-~~~~~~~~Dl 80 (285)
T 2p91_A 19 LEGKRALITGVANERSIAYGIAKSFHREGAQLAFTYATPKL-----------------EKRVREIAKGF-GSDLVVKCDV 80 (285)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEESSGGG-----------------HHHHHHHHHHT-TCCCEEECCT
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCCHHH-----------------HHHHHHHHHhc-CCeEEEEcCC
Confidence 568999999999 999999999999999999999885420 01122221111 2478899999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHcCC--cceEEEee
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ--ECHLVKLG 229 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~--~~~~V~~S 229 (479)
+|+++++++++.. ++|+||||||.... +....+.+++..++++|+.|+.++++++..... +.+||++|
T Consensus 81 ~~~~~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g~iv~is 160 (285)
T 2p91_A 81 SLDEDIKNLKKFLEENWGSLDIIVHSIAYAPKEEFKGGVIDTSREGFKIAMDISVYSLIALTRELLPLMEGRNGAIVTLS 160 (285)
T ss_dssp TCHHHHHHHHHHHHHHTSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGGTTSCCEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCcccCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCEEEEEc
Confidence 9999998887753 69999999997642 122345567788999999999999999976532 23999999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|...+. +..+...|+.||++.+.+++.++.++ |+++++++||.|+++......
T Consensus 161 S~~~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~ 216 (285)
T 2p91_A 161 YYGAEK------------------------VVPHYNVMGIAKAALESTVRYLAYDIAKHGHRINAISAGPVKTLAAYSIT 216 (285)
T ss_dssp CGGGTS------------------------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCSCC--CT
T ss_pred cchhcc------------------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCcEEEEEEeCcccCchhhccc
Confidence 965442 11235789999999999999998875 899999999999998643100
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
....+...+....+ ...+.+++|+|++++.++..... .|+ +|++.++
T Consensus 217 -----------------~~~~~~~~~~~~~p---------~~~~~~~~dva~~~~~l~s~~~~~~tG~--~~~vdgg 265 (285)
T 2p91_A 217 -----------------GFHLLMEHTTKVNP---------FGKPITIEDVGDTAVFLCSDWARAITGE--VVHVDNG 265 (285)
T ss_dssp -----------------THHHHHHHHHHHST---------TSSCCCHHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred -----------------chHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHcCCcccCCCCC--EEEECCC
Confidence 01122222222211 12467899999999999865433 355 8999875
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-23 Score=199.45 Aligned_cols=226 Identities=12% Similarity=0.021 Sum_probs=163.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. . .++.++.+|++
T Consensus 26 ~l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~----------------~~~~~~l~~-~-~~~~~~~~Dv~ 87 (276)
T 2b4q_A 26 SLAGRIALVTGGSRGIGQMIAQGLLEAGARVFICARDAEAC----------------ADTATRLSA-Y-GDCQAIPADLS 87 (276)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHH----------------HHHHHHHTT-S-SCEEECCCCTT
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-c-CceEEEEeeCC
Confidence 46789999999999999999999999999999998864321 111122211 1 26888999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCC----cceEEEe
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQ----ECHLVKL 228 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~----~~~~V~~ 228 (479)
|+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++. +.+. + +||++
T Consensus 88 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~~~~g-~iV~i 166 (276)
T 2b4q_A 88 SEAGARRLAQALGELSARLDILVNNAGTSWGAALESYPVSGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPA-RVINI 166 (276)
T ss_dssp SHHHHHHHHHHHHHHCSCCSEEEECCCCCCCCCTTSCCSHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSSCE-EEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhccCCCCCC-EEEEE
Confidence 999998887643 6999999999765322 233556678899999999998888774 3343 5 99999
Q ss_pred eccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCc-hhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCc
Q 011707 229 GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASS-FYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDE 304 (479)
Q Consensus 229 SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~ 304 (479)
||...+... .... .|+.||++.+.+++.++.++ |+++++++||.|..+....
T Consensus 167 sS~~~~~~~------------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~ 222 (276)
T 2b4q_A 167 GSVAGISAM------------------------GEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRH 222 (276)
T ss_dssp CCGGGTCCC------------------------CCSCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSTTTHH
T ss_pred CCHHHcCCC------------------------CCCccccHHHHHHHHHHHHHHHHHhcccCeEEEEEEeccCcCcchhh
Confidence 997655321 1234 89999999999999999874 8999999999998875311
Q ss_pred hhhhHhhhcccCCCCcccchHHHHHHHHhc--CCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCC
Q 011707 305 TAMHEELCNRLDYDGVFGTALNRFCVQAAV--GHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFT 380 (479)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~ 380 (479)
........... .. ....+.+++|+|++++.++..+.. .|+ ++++.+
T Consensus 223 -------------------~~~~~~~~~~~~~~~---------p~~r~~~p~dvA~~v~~l~s~~~~~~tG~--~i~vdG 272 (276)
T 2b4q_A 223 -------------------IANDPQALEADSASI---------PMGRWGRPEEMAALAISLAGTAGAYMTGN--VIPIDG 272 (276)
T ss_dssp -------------------HHHCHHHHHHHHHTS---------TTSSCCCHHHHHHHHHHHHSGGGTTCCSC--EEEEST
T ss_pred -------------------cchhHHHHHHhhcCC---------CCCCcCCHHHHHHHHHHHhCccccCCCCC--EEEeCC
Confidence 00001111111 11 123578999999999999976533 355 899887
Q ss_pred C
Q 011707 381 E 381 (479)
Q Consensus 381 ~ 381 (479)
+
T Consensus 273 G 273 (276)
T 2b4q_A 273 G 273 (276)
T ss_dssp T
T ss_pred C
Confidence 5
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-24 Score=200.91 Aligned_cols=234 Identities=12% Similarity=0.059 Sum_probs=163.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|+++++..... ..+..+.+.. .+.++.++.+|++
T Consensus 5 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~Dv~ 68 (259)
T 3edm_A 5 RFTNRTIVVAGAGRDIGRACAIRFAQEGANVVLTYNGAAEG---------------AATAVAEIEK-LGRSALAIKADLT 68 (259)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSSCHH---------------HHHHHHHHHT-TTSCCEEEECCTT
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHH---------------HHHHHHHHHh-cCCceEEEEcCCC
Confidence 45789999999999999999999999999999985543211 1111222221 2457889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHHcCC-cceEEEeeccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ-ECHLVKLGTMGEY 234 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~-~~~~V~~SS~~v~ 234 (479)
|.++++++++.. ++|+||||||.... .....+++++.+++++|+.|+.++++++...-. ..+||++||...+
T Consensus 69 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~ 148 (259)
T 3edm_A 69 NAAEVEAAISAAADKFGEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFSSQAGR 148 (259)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEcCHHhc
Confidence 999998888754 69999999997532 222345667788999999999999999976521 2389999997655
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhC--CceEEeecCeeecCCCCchhhhHhhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG--IRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--l~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
.. +......|+.||++.+.+++.++.+++ ++++++.||.|..+....
T Consensus 149 ~~-----------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~I~vn~v~PG~v~T~~~~~-------- 197 (259)
T 3edm_A 149 DG-----------------------GGPGALAYATSKGAVMTFTRGLAKEVGPKIRVNAVCPGMISTTFHDT-------- 197 (259)
T ss_dssp HC-----------------------CSTTCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCC-------------
T ss_pred cC-----------------------CCCCcHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCcCccccc--------
Confidence 11 112367899999999999999999864 999999999998764321
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCCcC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQFS 384 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~~s 384 (479)
+. .......+........+.+++|+|++++.++..... .|+ +|++.|+...
T Consensus 198 ---------------~~----~~~~~~~~~~~~p~~r~~~pedva~~v~~L~s~~~~~itG~--~i~vdGg~~~ 250 (259)
T 3edm_A 198 ---------------FT----KPEVRERVAGATSLKREGSSEDVAGLVAFLASDDAAYVTGA--CYDINGGVLF 250 (259)
T ss_dssp ------------------------------------CCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESBCSSB
T ss_pred ---------------cc----ChHHHHHHHhcCCCCCCcCHHHHHHHHHHHcCccccCccCC--EEEECCCcCC
Confidence 00 000011111223345678999999999999976544 455 9999886533
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=203.23 Aligned_cols=227 Identities=15% Similarity=0.102 Sum_probs=165.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+ +.++.++.+|++
T Consensus 3 ~l~gk~vlVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~----~~~~~~~~~Dv~ 62 (247)
T 3rwb_A 3 RLAGKTALVTGAAQGIGKAIAARLAADGATVIVSDINAEGA----------------KAAAASI----GKKARAIAADIS 62 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSCHHHH----------------HHHHHHH----CTTEEECCCCTT
T ss_pred CcCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHh----CCceEEEEcCCC
Confidence 45789999999999999999999999999999998864321 1111111 457889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++ ++.+...+||++||..
T Consensus 63 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~~ 142 (247)
T 3rwb_A 63 DPGSVKALFAEIQALTGGIDILVNNASIVPFVAWDDVDLDHWRKIIDVNLTGTFIVTRAGTDQMRAAGKAGRVISIASNT 142 (247)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCTH
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCcEEEEECchh
Confidence 999998888754 7999999999865432 23466678899999999999999884 4445223999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.||++.+.+++.++.+ +|+++++++||.|..+......
T Consensus 143 ~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~~--- 195 (247)
T 3rwb_A 143 FFA------------------------GTPNMAAYVAAKGGVIGFTRALATELGKYNITANAVTPGLIESDGVKASP--- 195 (247)
T ss_dssp HHH------------------------TCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHTSG---
T ss_pred hcc------------------------CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCcCcCccccccC---
Confidence 442 2233689999999999999999988 4899999999999776321100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
......+.... .....+...+|++++++.++..... .|+ ++++.++.
T Consensus 196 ------------~~~~~~~~~~~------------~~~~r~~~pedva~~v~~L~s~~~~~itG~--~i~vdGG~ 244 (247)
T 3rwb_A 196 ------------HNEAFGFVEML------------QAMKGKGQPEHIADVVSFLASDDARWITGQ--TLNVDAGM 244 (247)
T ss_dssp ------------GGGGHHHHHHH------------SSSCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTS
T ss_pred ------------hhHHHHHHhcc------------cccCCCcCHHHHHHHHHHHhCccccCCCCC--EEEECCCc
Confidence 00011111110 1123467899999999999976544 455 99998753
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=201.85 Aligned_cols=227 Identities=12% Similarity=0.034 Sum_probs=162.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. ..++.++.+|++|
T Consensus 4 ~~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~--~~~~~~~~~D~~~ 65 (251)
T 1zk4_A 4 LDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDVG----------------EKAAKSVGT--PDQIQFFQHDSSD 65 (251)
T ss_dssp TTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHCC--TTTEEEEECCTTC
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHhhc--cCceEEEECCCCC
Confidence 5689999999999999999999999999999999864311 111111111 1478899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+++++..++++|+.|+.++++++. +.+.+.+||++||...
T Consensus 66 ~~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~~~iv~isS~~~ 145 (251)
T 1zk4_A 66 EDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIEG 145 (251)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCEEEEeCCchh
Confidence 99998888742 5999999999754322 223455678889999999888777654 3444139999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH-----hCCceEEeecCeeecCCCCchhhh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA-----WGIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
+.. ..+...|+.+|++.|.+++.++.+ .|++++++|||.|+++.....
T Consensus 146 ~~~------------------------~~~~~~Y~~sK~a~~~~~~~~a~e~~~~~~~i~v~~v~Pg~v~t~~~~~~--- 198 (251)
T 1zk4_A 146 FVG------------------------DPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDDL--- 198 (251)
T ss_dssp TSC------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHTS---
T ss_pred ccC------------------------CCCCccchHHHHHHHHHHHHHHHHhcccCCCeEEEEEeeCcCcchhhhhc---
Confidence 532 233689999999999999988774 479999999999998742100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. ......... .......+++++|+|++++.++..+.. .|+ +|++.++
T Consensus 199 -------------~---~~~~~~~~~--------~~~~~~~~~~~~dva~~~~~l~~~~~~~~~G~--~~~v~gG 247 (251)
T 1zk4_A 199 -------------P---GAEEAMSQR--------TKTPMGHIGEPNDIAYICVYLASNESKFATGS--EFVVDGG 247 (251)
T ss_dssp -------------T---THHHHHTST--------TTCTTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -------------C---chhhhHHHh--------hcCCCCCCcCHHHHHHHHHHHcCcccccccCc--EEEECCC
Confidence 0 000111011 111234589999999999999976433 355 9999875
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-24 Score=201.59 Aligned_cols=232 Identities=13% Similarity=0.005 Sum_probs=162.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|+++++..... ..+..+.+. ..+.++.++.+|++
T Consensus 24 ~~~~k~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~Dl~ 87 (267)
T 3u5t_A 24 METNKVAIVTGASRGIGAAIAARLASDGFTVVINYAGKAAA---------------AEEVAGKIE-AAGGKALTAQADVS 87 (267)
T ss_dssp ---CCEEEEESCSSHHHHHHHHHHHHHTCEEEEEESSCSHH---------------HHHHHHHHH-HTTCCEEEEECCTT
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEcCCCHHH---------------HHHHHHHHH-hcCCeEEEEEcCCC
Confidence 34689999999999999999999999999999876543211 111111111 12457889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeecccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYG 235 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g 235 (479)
|+++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++...- .+.+||++||...+.
T Consensus 88 ~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~ 167 (267)
T 3u5t_A 88 DPAAVRRLFATAEEAFGGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMSTSQVGL 167 (267)
T ss_dssp CHHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCTHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeChhhcc
Confidence 999998888754 7999999999865433 233556788899999999999999887641 123899999965542
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
+......|+.||++.+.+++.++.++ |++++++.||.|..+.....
T Consensus 168 ------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~------- 216 (267)
T 3u5t_A 168 ------------------------LHPSYGIYAAAKAGVEAMTHVLSKELRGRDITVNAVAPGPTATDLFLEG------- 216 (267)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECCBC--------------
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCCEEEEEEECCCcCcccccc-------
Confidence 12236789999999999999999985 79999999999977642110
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
........+.. ......+..++|+|++++.++......-.++++++.++
T Consensus 217 -----------~~~~~~~~~~~---------~~p~~r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG 265 (267)
T 3u5t_A 217 -----------KSDEVRDRFAK---------LAPLERLGTPQDIAGAVAFLAGPDGAWVNGQVLRANGG 265 (267)
T ss_dssp ---------------CHHHHHT---------SSTTCSCBCHHHHHHHHHHHHSTTTTTCCSEEEEESSS
T ss_pred -----------CCHHHHHHHHh---------cCCCCCCcCHHHHHHHHHHHhCccccCccCCEEEeCCC
Confidence 00011111111 12334678999999999999976554333359998875
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=4e-23 Score=196.82 Aligned_cols=228 Identities=14% Similarity=0.060 Sum_probs=167.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|+++++..... ..+..+.+.. .+.++.++.+|++
T Consensus 28 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~---------------~~~~~~~l~~-~~~~~~~~~~Dv~ 91 (271)
T 3v2g_A 28 SLAGKTAFVTGGSRGIGAAIAKRLALEGAAVALTYVNAAER---------------AQAVVSEIEQ-AGGRAVAIRADNR 91 (271)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---------------HHHHHHHHHH-TTCCEEEEECCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHH---------------HHHHHHHHHh-cCCcEEEEECCCC
Confidence 45789999999999999999999999999999987654321 1111112211 2457889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc--CCcceEEEeeccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF--RQECHLVKLGTMGEY 234 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--g~~~~~V~~SS~~v~ 234 (479)
|+++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++... .. .+||++||....
T Consensus 92 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~-g~iv~isS~~~~ 170 (271)
T 3v2g_A 92 DAEAIEQAIRETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDG-GRIITIGSNLAE 170 (271)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTT-CEEEEECCGGGT
T ss_pred CHHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcC-CEEEEEeChhhc
Confidence 999988887754 7999999999865432 33466678889999999999999999765 33 399999985322
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
.. +..+...|+.||++.+.+++.++.++ |+++++++||.|..+.....
T Consensus 171 ~~-----------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~------ 221 (271)
T 3v2g_A 171 LV-----------------------PWPGISLYSASKAALAGLTKGLARDLGPRGITVNIVHPGSTDTDMNPAD------ 221 (271)
T ss_dssp CC-----------------------CSTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSSSSCSS------
T ss_pred cC-----------------------CCCCchHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEecCCCcCCccccc------
Confidence 10 12346899999999999999999885 89999999999998864321
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
..... ......+ ...+..++|+|++++.++..... .|+ ++++.++
T Consensus 222 ----------~~~~~----~~~~~~~---------~~r~~~pedvA~~v~fL~s~~~~~itG~--~i~vdGG 268 (271)
T 3v2g_A 222 ----------GDHAE----AQRERIA---------TGSYGEPQDIAGLVAWLAGPQGKFVTGA--SLTIDGG 268 (271)
T ss_dssp ----------CSSHH----HHHHTCT---------TSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ----------chhHH----HHHhcCC---------CCCCCCHHHHHHHHHHHhCcccCCccCC--EEEeCcC
Confidence 01111 1112111 23467899999999999865433 455 9999875
|
| >1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty acid synthesis, short-chain dehydrogenases/reductases, structural genomics; HET: ADE; 1.90A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=204.28 Aligned_cols=232 Identities=16% Similarity=0.099 Sum_probs=165.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc----cCCCceeEEE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS----LTGKNIELYI 158 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~v~ 158 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|...... +..+.+.. ..+.++.++.
T Consensus 15 ~l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~~----------------~~~~~l~~~~~~~~~~~~~~~~ 78 (303)
T 1yxm_A 15 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERLK----------------SAADELQANLPPTKQARVIPIQ 78 (303)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH----------------HHHHHHHHTSCTTCCCCEEEEE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHH----------------HHHHHHHhhccccCCccEEEEe
Confidence 457899999999999999999999999999999998643211 11111111 1245789999
Q ss_pred cccCChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEe
Q 011707 159 GDICDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKL 228 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~ 228 (479)
+|++|.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++... +.+ +||++
T Consensus 79 ~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~-~iv~i 157 (303)
T 1yxm_A 79 CNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGG-SIVNI 157 (303)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCE-EEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCC-eEEEE
Confidence 9999999998888753 5999999999654322 22345567788999999999999997652 334 89999
Q ss_pred eccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCch
Q 011707 229 GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 229 SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~ 305 (479)
||...++. .....|+.+|++.+.+++.++.++ |++++++|||.|+|+.....
T Consensus 158 sS~~~~~~-------------------------~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~ 212 (303)
T 1yxm_A 158 IVPTKAGF-------------------------PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVEN 212 (303)
T ss_dssp CCCCTTCC-------------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTT
T ss_pred EeecccCC-------------------------CcchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCcccchhhhh
Confidence 99763321 235789999999999999999885 89999999999999842100
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
. ......+....... .....+++++|+|++++.++..... .|+ ++++.++.
T Consensus 213 ~---------------~~~~~~~~~~~~~~---------~p~~~~~~~~dvA~~i~~l~~~~~~~~~G~--~~~v~gG~ 265 (303)
T 1yxm_A 213 Y---------------GSWGQSFFEGSFQK---------IPAKRIGVPEEVSSVVCFLLSPAASFITGQ--SVDVDGGR 265 (303)
T ss_dssp S---------------GGGGGGGGTTGGGG---------STTSSCBCTHHHHHHHHHHHSGGGTTCCSC--EEEESTTG
T ss_pred c---------------cccchHHHHHHHhc---------CcccCCCCHHHHHHHHHHHhCcccccCCCc--EEEECCCe
Confidence 0 00000011111111 1123578999999999999975433 355 99998863
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=201.55 Aligned_cols=231 Identities=13% Similarity=0.002 Sum_probs=169.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+. ..+.++.++.+|++|
T Consensus 6 l~gk~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~----------------~~~~~~~~-~~~~~~~~~~~Dv~~ 68 (280)
T 3tox_A 6 LEGKIAIVTGASSGIGRAAALLFAREGAKVVVTARNGNAL----------------AELTDEIA-GGGGEAAALAGDVGD 68 (280)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEECCSCHHHH----------------HHHHHHHT-TTTCCEEECCCCTTC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHH-hcCCcEEEEECCCCC
Confidence 5689999999999999999999999999999998864321 11122221 124578899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
+++++++++.. ++|+||||||.... +....+++++..++++|+.|+.++++++.. .+.+ +||++||..
T Consensus 69 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~ 147 (280)
T 3tox_A 69 EALHEALVELAVRRFGGLDTAFNNAGALGAMGEISSLSVEGWRETLDTNLTSAFLAAKYQVPAIAALGGG-SLTFTSSFV 147 (280)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCSCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCSB
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEEcChh
Confidence 99998888743 79999999997632 223346667888999999999999998754 3444 999999966
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+.. +..+...|+.||++.+.+++.++.++ |+++++++||.|.++......
T Consensus 148 ~~~~-----------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~~--- 201 (280)
T 3tox_A 148 GHTA-----------------------GFAGVAPYAASKAGLIGLVQALAVELGARGIRVNALLPGGTDTPANFANL--- 201 (280)
T ss_dssp TTTB-----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBSSTTSGGGS---
T ss_pred hCcC-----------------------CCCCchhHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEECCCCCchhhhhc---
Confidence 5421 12346889999999999999999885 899999999999988643210
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.+ ........+... .....+.+++|+|++++.++..... .|+ ++++.++
T Consensus 202 --------~~----~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~L~s~~a~~itG~--~i~vdGG 252 (280)
T 3tox_A 202 --------PG----AAPETRGFVEGL---------HALKRIARPEEIAEAALYLASDGASFVTGA--ALLADGG 252 (280)
T ss_dssp --------TT----CCTHHHHHHHTT---------STTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred --------cc----cCHHHHHHHhcc---------CccCCCcCHHHHHHHHHHHhCccccCCcCc--EEEECCC
Confidence 00 001122222222 2234678999999999999976544 355 9999886
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=197.45 Aligned_cols=226 Identities=14% Similarity=0.102 Sum_probs=164.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc-
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI- 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl- 161 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+......++.++.+|+
T Consensus 9 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~D~~ 72 (252)
T 3f1l_A 9 LLNDRIILVTGASDGIGREAAMTYARYGATVILLGRNEEKL----------------RQVASHINEETGRQPQWFILDLL 72 (252)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHHHSCCCEEEECCTT
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHhhcCCCceEEEEecc
Confidence 46799999999999999999999999999999999864321 1122222222234788999999
Q ss_pred -CChHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEee
Q 011707 162 -CDFEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLG 229 (479)
Q Consensus 162 -~d~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~S 229 (479)
+|.++++++++.. ++|+||||||.... +....+++++..++++|+.|+.++++++. +.+.+ +||++|
T Consensus 73 ~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~g-~iv~is 151 (252)
T 3f1l_A 73 TCTSENCQQLAQRIAVNYPRLDGVLHNAGLLGDVCPMSEQNPQVWQDVMQVNVNATFMLTQALLPLLLKSDAG-SLVFTS 151 (252)
T ss_dssp TCCHHHHHHHHHHHHHHCSCCSEEEECCCCCCCCSCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSSSC-EEEEEC
T ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCC-EEEEEC
Confidence 9998888877643 69999999997532 33344666788899999999999999884 34445 999999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhC--CceEEeecCeeecCCCCchhh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG--IRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--l~~~ivRp~~v~Gp~~~~~~~ 307 (479)
|...+. +......|+.||++.+.+++.++.+++ ++++++.||.|..+.
T Consensus 152 S~~~~~------------------------~~~~~~~Y~asK~a~~~l~~~la~e~~~~irvn~v~PG~v~t~~------ 201 (252)
T 3f1l_A 152 SSVGRQ------------------------GRANWGAYAASKFATEGMMQVLADEYQQRLRVNCINPGGTRTAM------ 201 (252)
T ss_dssp CGGGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECCSBSSHH------
T ss_pred Chhhcc------------------------CCCCCchhHHHHHHHHHHHHHHHHHhcCCcEEEEEecCcccCch------
Confidence 965432 223468999999999999999999874 899999998886541
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCC-cCH
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQ-FSV 385 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~-~s~ 385 (479)
....... .....+.+++|++.+++.++......-.++++++.++. .++
T Consensus 202 ---------------------~~~~~~~---------~~~~~~~~p~dva~~~~~L~s~~~~~itG~~i~vdgG~~~~~ 250 (252)
T 3f1l_A 202 ---------------------RASAFPT---------EDPQKLKTPADIMPLYLWLMGDDSRRKTGMTFDAQPGRKPGI 250 (252)
T ss_dssp ---------------------HHHHCTT---------CCGGGSBCTGGGHHHHHHHHSGGGTTCCSCEEESSCC-----
T ss_pred ---------------------hhhhCCc---------cchhccCCHHHHHHHHHHHcCccccCCCCCEEEeCCCcCCCC
Confidence 1111111 11235678999999999999765443223499998853 443
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.9e-24 Score=203.24 Aligned_cols=264 Identities=14% Similarity=0.109 Sum_probs=173.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|+++++........ ........+.+...... ..+.++.++.+|++
T Consensus 7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~ 81 (287)
T 3pxx_A 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFDICHDIETNE----YPLATSRDLEEAGLEVE-KTGRKAYTAEVDVR 81 (287)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTSC----SCCCCHHHHHHHHHHHH-HTTSCEEEEECCTT
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEcccccccccc----cchhhhHHHHHHHHHHH-hcCCceEEEEccCC
Confidence 46789999999999999999999999999999999863321110 00000111111111222 12467899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccC
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGT 236 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~ 236 (479)
|.++++++++.. ++|+||||||..... ...+.+++..++++|+.|+.++++++...- ...+||++||...+..
T Consensus 82 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~-~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~ 160 (287)
T 3pxx_A 82 DRAAVSRELANAVAEFGKLDVVVANAGICPLG-AHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTGSVAGLIA 160 (287)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCC-TTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECCHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCccc-CcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEeccchhccc
Confidence 999998887754 799999999986544 224566788899999999999999997652 2238999999654432
Q ss_pred C-CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 237 P-NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 237 ~-~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
. ..+..+. .+..+...|+.||++.+.+++.++.++ |+++++++||.|..+..........+.
T Consensus 161 ~~~~~~~~~--------------~~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~~~~~~~ 226 (287)
T 3pxx_A 161 AAQPPGAGG--------------PQGPGGAGYSYAKQLVDSYTLQLAAQLAPQSIRANVIHPTNVNTDMLNSAPMYRQFR 226 (287)
T ss_dssp HHCCC-------------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESSBSSTTTSSHHHHHHHC
T ss_pred ccccccccc--------------cCCCccchHHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCccccccccccchhhhhc
Confidence 1 1111111 122335789999999999999999986 899999999999988654311000000
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.... .............. . .....+.+++|+|++++.++..... .|+ ++++.++
T Consensus 227 ~~~~-----~~~~~~~~~~~~~~-------~-~~~~~~~~p~dva~~v~fL~s~~a~~itG~--~i~vdGG 282 (287)
T 3pxx_A 227 PDLE-----APSRADALLAFPAM-------Q-AMPTPYVEASDISNAVCFLASDESRYVTGL--QFKVDAG 282 (287)
T ss_dssp TTSS-----SCCHHHHHHHGGGG-------C-SSSCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred cccc-----cchhHHHHhhhhhh-------c-ccCCCCCCHHHHHhhHheecchhhcCCCCc--eEeECch
Confidence 0000 00000001110000 1 1115789999999999999975443 455 9999875
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.9e-24 Score=202.59 Aligned_cols=230 Identities=12% Similarity=0.112 Sum_probs=168.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 23 ~l~gk~~lVTGas~gIG~aia~~la~~G~~V~~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~Dv~ 85 (271)
T 4ibo_A 23 DLGGRTALVTGSSRGLGRAMAEGLAVAGARILINGTDPSRV----------------AQTVQEFRN-VGHDAEAVAFDVT 85 (271)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHH----------------HHHHHHHHH-TTCCEEECCCCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCceEEEEcCCC
Confidence 46789999999999999999999999999999988754321 111222221 2457889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|.++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++.. .+.+ +||++||..
T Consensus 86 d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iV~isS~~ 164 (271)
T 4ibo_A 86 SESEIIEAFARLDEQGIDVDILVNNAGIQFRKPMIELETADWQRVIDTNLTSAFMIGREAAKRMIPRGYG-KIVNIGSLT 164 (271)
T ss_dssp CHHHHHHHHHHHHHHTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGG
T ss_pred CHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCchhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEccHH
Confidence 999998888754 6999999999865433 2346667888999999999999887754 3555 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +..+...|+.||++.+.+++.++.+ .|+++++++||.|..+......
T Consensus 165 ~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~--- 217 (271)
T 4ibo_A 165 SEL------------------------ARATVAPYTVAKGGIKMLTRAMAAEWAQYGIQANAIGPGYMLTDMNQALI--- 217 (271)
T ss_dssp GTS------------------------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH---
T ss_pred hCC------------------------CCCCchhHHHHHHHHHHHHHHHHHHHhhhCeEEEEEEeccEeCcchhhcc---
Confidence 431 2234689999999999999999988 4899999999999887432100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
. ...+...+.... ....+.+++|+|++++.++..... .|+ ++++.++.
T Consensus 218 ---~-----------~~~~~~~~~~~~---------p~~r~~~pedva~~v~~L~s~~~~~itG~--~i~vdGG~ 267 (271)
T 4ibo_A 218 ---D-----------NPEFDAWVKART---------PAKRWGKPQELVGTAVFLSASASDYVNGQ--IIYVDGGM 267 (271)
T ss_dssp ---H-----------CHHHHHHHHHHS---------TTCSCBCGGGGHHHHHHHHSGGGTTCCSC--EEEESTTG
T ss_pred ---c-----------CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCccccCCCCc--EEEECCCe
Confidence 0 011222222222 223567899999999999876443 455 99998853
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-23 Score=199.79 Aligned_cols=253 Identities=13% Similarity=0.034 Sum_probs=170.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|+++++..+........ ......+.+..+... ..+.++.++.+|++
T Consensus 8 ~l~~k~~lVTGas~GIG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~~~~D~~ 83 (277)
T 3tsc_A 8 KLEGRVAFITGAARGQGRAHAVRMAAEGADIIAVDIAGKLPSCVPYD---PASPDDLSETVRLVE-AANRRIVAAVVDTR 83 (277)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCCTTCCSC---CCCHHHHHHHHHHHH-HTTCCEEEEECCTT
T ss_pred ccCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEecccccccccccc---ccCHHHHHHHHHHHH-hcCCeEEEEECCCC
Confidence 46789999999999999999999999999999998843211000000 000011111222221 22457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|.++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++.. .+...+||++||..
T Consensus 84 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~ 163 (277)
T 3tsc_A 84 DFDRLRKVVDDGVAALGRLDIIVANAGVAAPQAWDDITPEDFRDVMDINVTGTWNTVMAGAPRIIEGGRGGSIILISSAA 163 (277)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCCCEEEEEccHh
Confidence 999998888752 6999999999865432 2346667889999999999999988643 33223999999966
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.||++.+.+++.++.++ |+++++++||.|..+.....
T Consensus 164 ~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~---- 215 (277)
T 3tsc_A 164 GMK------------------------MQPFMIHYTASKHAVTGLARAFAAELGKHSIRVNSVHPGPVNTPMGSGD---- 215 (277)
T ss_dssp GTS------------------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSGGGSHH----
T ss_pred hCC------------------------CCCCchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEEeCCCcCCcccch----
Confidence 542 22336789999999999999999885 79999999999988753221
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCC-eEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHP-LTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~ 382 (479)
.............. .......... .+.+++|+|++++.++......-.++++++.++.
T Consensus 216 --------------~~~~~~~~~~~~~~~~~~~~~~~p~-r~~~pedvA~~v~~L~s~~~~~itG~~i~vdGG~ 274 (277)
T 3tsc_A 216 --------------MVTAVGQAMETNPQLSHVLTPFLPD-WVAEPEDIADTVCWLASDESRKVTAAQIPVDQGS 274 (277)
T ss_dssp --------------HHHHHHHHHHTCGGGTTTTCCSSSC-SCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --------------hhhhhhhcccccHHHHHHhhhccCC-CCCCHHHHHHHHHHHhCccccCCcCCEEeeCCCc
Confidence 01111111111110 0011111122 4789999999999999765443222399998764
|
| >3u9l_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.4e-24 Score=206.20 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=135.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++.+|...+.... .+ +.+.......+.++.++.+|++|
T Consensus 3 m~~k~vlVTGas~GIG~aia~~L~~~G~~V~~~~r~~~~r~~~-----------~~-~~l~~~~~~~~~~~~~~~~Dvtd 70 (324)
T 3u9l_A 3 MSKKIILITGASSGFGRLTAEALAGAGHRVYASMRDIVGRNAS-----------NV-EAIAGFARDNDVDLRTLELDVQS 70 (324)
T ss_dssp --CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCTTTTTHH-----------HH-HHHHHHHHHHTCCEEEEECCTTC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEecCcccccCHH-----------HH-HHHHHHHHhcCCcEEEEEeecCC
Confidence 4578999999999999999999999999999988753221110 00 11111111124578999999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v 233 (479)
.++++++++.. ++|+||||||...... ...+++++..++++|+.|+.++++++ ++.+.+ +||++||...
T Consensus 71 ~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~a~lp~m~~~~~g-~iV~isS~~~ 149 (324)
T 3u9l_A 71 QVSVDRAIDQIIGEDGRIDVLIHNAGHMVFGPAEAFTPEQFAELYDINVLSTQRVNRAALPHMRRQKHG-LLIWISSSSS 149 (324)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECCCCCBCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCcCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEecchh
Confidence 99998888754 7999999999765432 33356677889999999999999998 555666 9999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCC
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVR 301 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~ 301 (479)
++.. ......|+.||++.|.+++.++.+ +|+++++|+||.|.++.
T Consensus 150 ~~~~-----------------------~~~~~~Y~asKaa~~~~~~~la~el~~~gI~v~~v~PG~v~t~~ 197 (324)
T 3u9l_A 150 AGGT-----------------------PPYLAPYFAAKAAMDAIAVQYARELSRWGIETSIIVPGAFTSGT 197 (324)
T ss_dssp TSCC-----------------------CSSCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCC----
T ss_pred ccCC-----------------------CCcchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEECCccccCc
Confidence 5321 122578999999999999999988 48999999999998764
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=201.84 Aligned_cols=236 Identities=15% Similarity=0.111 Sum_probs=167.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 25 ~~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~Dv~ 87 (283)
T 3v8b_A 25 NQPSPVALITGAGSGIGRATALALAADGVTVGALGRTRTEV----------------EEVADEIVG-AGGQAIALEADVS 87 (283)
T ss_dssp --CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESSHHHH----------------HHHHHHHTT-TTCCEEEEECCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEEccCC
Confidence 35689999999999999999999999999999999864321 111222211 2457889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~ 231 (479)
|+++++++++.. ++|+||||||.... +....+++++.+++++|+.|+.++++++ ++.+.+ +||++||.
T Consensus 88 d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~Iv~isS~ 166 (283)
T 3v8b_A 88 DELQMRNAVRDLVLKFGHLDIVVANAGINGVWAPIDDLKPFEWDETIAVNLRGTFLTLHLTVPYLKQRGGG-AIVVVSSI 166 (283)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCS
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-eEEEEcCh
Confidence 999998888754 79999999997543 2334466678889999999999999988 455555 99999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+.. .+..+...|+.||++.+.+++.++.++ |+++++++||.|..+......
T Consensus 167 ~~~~~----------------------~~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~-- 222 (283)
T 3v8b_A 167 NGTRT----------------------FTTPGATAYTATKAAQVAIVQQLALELGKHHIRVNAVCPGAIETNISDNTK-- 222 (283)
T ss_dssp BTTTB----------------------CCSTTCHHHHHHHHHHHHHHHHHHHHTTTTTEEEEEEEECSBSSCTTCCTT--
T ss_pred hhccC----------------------CCCCCchHHHHHHHHHHHHHHHHHHHhCccCcEEEEEEeCCCcCCcccccc--
Confidence 54321 022346899999999999999999984 799999999999887543210
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCce--eccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQT--RGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.. .. .....+.......... ..+..++|+|++++.++..... .|+ ++++.++
T Consensus 223 -------------~~--~~----~~~~~~~~~~~~~~p~~~~r~~~pedvA~~v~fL~s~~a~~itG~--~i~vdGG 278 (283)
T 3v8b_A 223 -------------LR--HE----EETAIPVEWPKGQVPITDGQPGRSEDVAELIRFLVSERARHVTGS--PVWIDGG 278 (283)
T ss_dssp -------------BC--CH----HHHSCCCBCTTCSCGGGTTCCBCHHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred -------------cc--cc----hhhhhhhhhhhhcCccccCCCCCHHHHHHHHHHHcCccccCCcCC--EEEECcC
Confidence 00 00 0000011111111122 3567899999999999875443 355 9998875
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-23 Score=203.88 Aligned_cols=225 Identities=14% Similarity=0.099 Sum_probs=156.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++|
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~Dv~d 91 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPAL----------------EQAVNGLRG-QGFDAHGVVCDVRH 91 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHH-TTCCEEEEECCTTC
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHh-cCCceEEEEccCCC
Confidence 5789999999999999999999999999999999865421 111222211 24578999999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++.. .+...+||++||...
T Consensus 92 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~iv~isS~~~ 171 (301)
T 3tjr_A 92 LDEMVRLADEAFRLLGGVDVVFSNAGIVVAGPLAQMNHDDWRWVIDIDLWGSIHAVEAFLPRLLEQGTGGHIAFTASFAG 171 (301)
T ss_dssp HHHHHHHHHHHHHHHSSCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCSCEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCCCcEEEEeCchhh
Confidence 99998888754 7999999999865432 2335567788999999999999998743 342239999999654
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +......|+.||++.+.+++.++.++ |+++++++||.|..+......
T Consensus 172 ~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~---- 223 (301)
T 3tjr_A 172 LV------------------------PNAGLGTYGVAKYGVVGLAETLAREVKPNGIGVSVLCPMVVETKLVSNSE---- 223 (301)
T ss_dssp TS------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEECCSCCCSSHHHHHH----
T ss_pred cC------------------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCccccccccccc----
Confidence 42 22347899999999999999999885 799999999999776321000
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP 367 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~ 367 (479)
............+...++.......+++++|+|++++.+++.+
T Consensus 224 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~pedvA~~i~~~l~~~ 266 (301)
T 3tjr_A 224 --------------RIRGADYGMSATPEGAFGPLPTQDESVSADDVARLTADAILAN 266 (301)
T ss_dssp --------------HHC----------------------CCCHHHHHHHHHHHHHHT
T ss_pred --------------cccchhhccccChhhhccccccccCCCCHHHHHHHHHHHHhcC
Confidence 0000000011112222233334457899999999999999864
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=198.64 Aligned_cols=237 Identities=12% Similarity=0.057 Sum_probs=163.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|++|||||+|+||.+++++|+++|++|++++|..... .+.+..+.+.. .+.++.++.+|++|++
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~--------------~~~~~~~~~~~-~~~~~~~~~~Dv~~~~ 66 (258)
T 3a28_C 2 SKVAMVTGGAQGIGRGISEKLAADGFDIAVADLPQQEE--------------QAAETIKLIEA-ADQKAVFVGLDVTDKA 66 (258)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECGGGHH--------------HHHHHHHHHHT-TTCCEEEEECCTTCHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchH--------------HHHHHHHHHHh-cCCcEEEEEccCCCHH
Confidence 68999999999999999999999999999998854320 01111112211 1357889999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CC-cceEEEeeccccc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQ-ECHLVKLGTMGEY 234 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~-~~~~V~~SS~~v~ 234 (479)
+++++++.. ++|+||||||...... ...+++++..++++|+.|+.++++++... +. + +||++||...+
T Consensus 67 ~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~ 145 (258)
T 3a28_C 67 NFDSAIDEAAEKLGGFDVLVNNAGIAQIKPLLEVTEEDLKQIYSVNVFSVFFGIQAASRKFDELGVKG-KIINAASIAAI 145 (258)
T ss_dssp HHHHHHHHHHHHHTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCC-EEEEECCGGGT
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCCc-EEEEECcchhc
Confidence 988887643 6999999999765422 23355677889999999999999988653 54 5 99999997554
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
. +..+...|+.||++.+.+++.++.++ |+++++++||.|..+..... ...+
T Consensus 146 ~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--~~~~ 199 (258)
T 3a28_C 146 Q------------------------GFPILSAYSTTKFAVRGLTQAAAQELAPKGHTVNAYAPGIVGTGMWEQI--DAEL 199 (258)
T ss_dssp S------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSHHHHHH--HHHH
T ss_pred c------------------------CCCCchhHHHHHHHHHHHHHHHHHHHHhhCeEEEEEECCccCChhhhhh--hhhh
Confidence 2 12336799999999999999999875 89999999999976531100 0000
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
...... . .......+... .....+.+++|+|++++.++..+.. .|+ ++++.++
T Consensus 200 ~~~~~~--~----~~~~~~~~~~~---------~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~--~i~vdGG 254 (258)
T 3a28_C 200 SKINGK--P----IGENFKEYSSS---------IALGRPSVPEDVAGLVSFLASENSNYVTGQ--VMLVDGG 254 (258)
T ss_dssp HHHHCC--C----TTHHHHHHHTT---------CTTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESSS
T ss_pred ccccCC--c----hHHHHHHHHhc---------CCCCCccCHHHHHHHHHHHhCcccCCCCCC--EEEECCC
Confidence 000000 0 00111111111 1223578999999999999976433 454 8998875
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-23 Score=197.40 Aligned_cols=216 Identities=9% Similarity=-0.037 Sum_probs=150.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 4 ~~~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~Dv~ 66 (252)
T 3h7a_A 4 TPRNATVAVIGAGDYIGAEIAKKFAAEGFTVFAGRRNGEKL----------------APLVAEIEA-AGGRIVARSLDAR 66 (252)
T ss_dssp -CCSCEEEEECCSSHHHHHHHHHHHHTTCEEEEEESSGGGG----------------HHHHHHHHH-TTCEEEEEECCTT
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCeEEEEECcCC
Confidence 35689999999999999999999999999999999864421 111222222 1457899999999
Q ss_pred ChHHHHHHhhhc----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 163 DFEFLSESFKSF----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 163 d~~~~~~~~~~~----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
|.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++. +.+.+ +||++||...
T Consensus 67 ~~~~v~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~ 145 (252)
T 3h7a_A 67 NEDEVTAFLNAADAHAPLEVTIFNVGANVNFPILETTDRVFRKVWEMACWAGFVSGRESARLMLAHGQG-KIFFTGATAS 145 (252)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEEEEGGG
T ss_pred CHHHHHHHHHHHHhhCCceEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEECCHHH
Confidence 999999888754 7899999999865432 234566788899999999999988773 34555 9999999654
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCce-EEeecCeeecCCCCchhhhH
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRA-TDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~-~ivRp~~v~Gp~~~~~~~~~ 309 (479)
+. +......|+.||++.+.+++.++.++ |+++ +++.||.|..+....
T Consensus 146 ~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~n~v~PG~v~T~~~~~----- 196 (252)
T 3h7a_A 146 LR------------------------GGSGFAAFASAKFGLRAVAQSMARELMPKNIHVAHLIIDSGVDTAWVRE----- 196 (252)
T ss_dssp TC------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC---------------
T ss_pred cC------------------------CCCCCccHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCCccCChhhhc-----
Confidence 32 22346899999999999999999885 7999 899999987764221
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
....... .+....... +.+++|+|++++.++..+..
T Consensus 197 --------------~~~~~~~---------~~~~~~~~~-~~~pedvA~~~~~l~s~~~~ 232 (252)
T 3h7a_A 197 --------------RREQMFG---------KDALANPDL-LMPPAAVAGAYWQLYQQPKS 232 (252)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHCCGG
T ss_pred --------------cchhhhh---------hhhhcCCcc-CCCHHHHHHHHHHHHhCchh
Confidence 0000000 111112233 89999999999999987554
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.1e-23 Score=193.94 Aligned_cols=220 Identities=17% Similarity=0.119 Sum_probs=162.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|.... .+...... ++.++.+|++|
T Consensus 3 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~--------------------~~~~~~~~--~~~~~~~D~~~ 60 (245)
T 1uls_A 3 LKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGP--------------------LREAAEAV--GAHPVVMDVAD 60 (245)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HHHHHHTT--TCEEEECCTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHH--------------------HHHHHHHc--CCEEEEecCCC
Confidence 468999999999999999999999999999999885431 11111111 37889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++... +.+ +||++||...
T Consensus 61 ~~~~~~~~~~~~~~~g~id~lvn~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~ 139 (245)
T 1uls_A 61 PASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPG-SIVLTASRVY 139 (245)
T ss_dssp HHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCE-EEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEccchh
Confidence 99998887653 5999999999764322 23355677889999999999999888653 445 9999999764
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
++.+ ....|+.+|++.+.+++.++.++ |+++++++||.|..+.....
T Consensus 140 ~~~~-------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~----- 189 (245)
T 1uls_A 140 LGNL-------------------------GQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAKV----- 189 (245)
T ss_dssp GCCT-------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSSS-----
T ss_pred cCCC-------------------------CchhHHHHHHHHHHHHHHHHHHHhHhCeEEEEEEeCcCcCcchhhc-----
Confidence 4322 25789999999999999998874 89999999999987753210
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
............+ ...+.+.+|+|++++.++..+.. .|+ ++++.++
T Consensus 190 --------------~~~~~~~~~~~~p---------~~~~~~~~dvA~~v~~l~s~~~~~~tG~--~~~vdgG 237 (245)
T 1uls_A 190 --------------PEKVREKAIAATP---------LGRAGKPLEVAYAALFLLSDESSFITGQ--VLFVDGG 237 (245)
T ss_dssp --------------CHHHHHHHHHTCT---------TCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred --------------CHHHHHHHHhhCC---------CCCCcCHHHHHHHHHHHhCchhcCCcCC--EEEECCC
Confidence 0111122222211 12478999999999999976433 355 8988875
|
| >3gk3_A Acetoacetyl-COA reductase; acetoacetyl-CO reductase, oxidoreductase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=200.33 Aligned_cols=231 Identities=13% Similarity=0.060 Sum_probs=165.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|+++++..... ..+..... ...+.++.++.+|++
T Consensus 22 ~~~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~---------------~~~~~~~~-~~~~~~~~~~~~Dl~ 85 (269)
T 3gk3_A 22 MQAKRVAFVTGGMGGLGAAISRRLHDAGMAVAVSHSERNDH---------------VSTWLMHE-RDAGRDFKAYAVDVA 85 (269)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHTTTCEEEEEECSCHHH---------------HHHHHHHH-HTTTCCCEEEECCTT
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCchHH---------------HHHHHHHH-HhcCCceEEEEecCC
Confidence 35789999999999999999999999999999988543321 01111111 122457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++.. .+.+ +||++||..
T Consensus 86 ~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~g-~iv~isS~~ 164 (269)
T 3gk3_A 86 DFESCERCAEKVLADFGKVDVLINNAGITRDATFMKMTKGDWDAVMRTDLDAMFNVTKQFIAGMVERRFG-RIVNIGSVN 164 (269)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCcchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEeCChh
Confidence 999988887754 7999999999765432 2335567788999999999999988753 4445 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +..+...|+.||++.+.+++.++.++ |+++++++||.|..+.....
T Consensus 165 ~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~---- 216 (269)
T 3gk3_A 165 GSR------------------------GAFGQANYASAKAGIHGFTKTLALETAKRGITVNTVSPGYLATAMVEAV---- 216 (269)
T ss_dssp HHH------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTTC-----
T ss_pred hcc------------------------CCCCcchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEecCcccchhhhhh----
Confidence 442 22346899999999999999999885 89999999999988753210
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
..... .. .+........+.+++|+|++++.++......-.++++++.++
T Consensus 217 ---------------~~~~~----~~----~~~~~~~~~~~~~p~dvA~~v~~L~s~~~~~itG~~i~vdgG 265 (269)
T 3gk3_A 217 ---------------PQDVL----EA----KILPQIPVGRLGRPDEVAALIAFLCSDDAGFVTGADLAINGG 265 (269)
T ss_dssp -------------------------C----CSGGGCTTSSCBCHHHHHHHHHHHTSTTCTTCCSCEEEESTT
T ss_pred ---------------chhHH----HH----HhhhcCCcCCccCHHHHHHHHHHHhCCCcCCeeCcEEEECCC
Confidence 00000 00 011112334678999999999999886554322349999885
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=198.03 Aligned_cols=242 Identities=10% Similarity=0.019 Sum_probs=168.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc-cCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS-LTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl 161 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. ....++.++.+|+
T Consensus 5 ~l~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~~Dv 68 (265)
T 3lf2_A 5 DLSEAVAVVTGGSSGIGLATVELLLEAGAAVAFCARDGERL----------------RAAESALRQRFPGARLFASVCDV 68 (265)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHHSTTCCEEEEECCT
T ss_pred CcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHHhcCCceEEEEeCCC
Confidence 45789999999999999999999999999999999864321 122222222 2233589999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
+|.++++++++.. ++|+||||||...... ...+++++..++++|+.|+.++++++.. .+.+ +||++||.
T Consensus 69 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~ 147 (265)
T 3lf2_A 69 LDALQVRAFAEACERTLGCASILVNNAGQGRVSTFAETTDEAWSEELQLKFFSVIHPVRAFLPQLESRADA-AIVCVNSL 147 (265)
T ss_dssp TCHHHHHHHHHHHHHHHCSCSEEEECCCCCCCBCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTE-EEEEEEEG
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCe-EEEEECCc
Confidence 9999988887654 7999999999865432 2345667888999999999999998854 2334 89999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +......|+.||++.+.+++.++.++ |+++++++||.|..+.....
T Consensus 148 ~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~t~~~~~~--- 200 (265)
T 3lf2_A 148 LASQ------------------------PEPHMVATSAARAGVKNLVRSMAFEFAPKGVRVNGILIGLVESGQWRRR--- 200 (265)
T ss_dssp GGTS------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHHH---
T ss_pred ccCC------------------------CCCCchhhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCcCcCchhhhh---
Confidence 5442 22346899999999999999999885 89999999999987631100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.......+ .....+......... .....+..++|+|++++.++......-.++++++.++
T Consensus 201 ---~~~~~~~~---~~~~~~~~~~~~~~~-------~p~~r~~~pedvA~~v~fL~s~~~~~itG~~i~vdGG 260 (265)
T 3lf2_A 201 ---FEAREERE---LDWAQWTAQLARNKQ-------IPLGRLGKPIEAARAILFLASPLSAYTTGSHIDVSGG 260 (265)
T ss_dssp ---HTC---------CHHHHHHHHHHHTT-------CTTCSCBCHHHHHHHHHHHHSGGGTTCCSEEEEESSS
T ss_pred ---hhhhhhhc---cCHHHHHHHHhhccC-------CCcCCCcCHHHHHHHHHHHhCchhcCcCCCEEEECCC
Confidence 00000000 000111111111100 1234578999999999999975444323349999875
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=197.35 Aligned_cols=227 Identities=15% Similarity=0.133 Sum_probs=162.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... ..+..+.+.. .+.++.++.+|++|
T Consensus 2 l~~k~vlVTGas~giG~~ia~~l~~~G~~V~~~~r~~~~~---------------~~~~~~~~~~-~~~~~~~~~~D~~~ 65 (246)
T 2uvd_A 2 LKGKVALVTGASRGIGRAIAIDLAKQGANVVVNYAGNEQK---------------ANEVVDEIKK-LGSDAIAVRADVAN 65 (246)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH---------------HHHHHHHHHH-TTCCEEEEECCTTC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCHHH---------------HHHHHHHHHh-cCCcEEEEEcCCCC
Confidence 4578999999999999999999999999999998732211 1111111211 13578899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++. +.+.+ +||++||...
T Consensus 66 ~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~ 144 (246)
T 2uvd_A 66 AEDVTNMVKQTVDVFGQVDILVNNAGVTKDNLLMRMKEEEWDTVINTNLKGVFLCTKAVSRFMMRQRHG-RIVNIASVVG 144 (246)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECCHHh
Confidence 99998888753 6999999999764322 233556778899999999888877664 34555 9999999654
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+.. ..+...|+.||++.+.+++.++.++ |+++++++||.|..+.....
T Consensus 145 ~~~------------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~----- 195 (246)
T 2uvd_A 145 VTG------------------------NPGQANYVAAKAGVIGLTKTSAKELASRNITVNAIAPGFIATDMTDVL----- 195 (246)
T ss_dssp HHC------------------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBGGGCSSCC-----
T ss_pred cCC------------------------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeccccCcchhhc-----
Confidence 321 1236789999999999999998874 89999999999987753210
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.. ..........+ ...+++++|+|++++.++..+.. .|+ ++++.++
T Consensus 196 -----------~~---~~~~~~~~~~p---------~~~~~~~~dvA~~~~~l~s~~~~~~tG~--~~~vdgG 243 (246)
T 2uvd_A 196 -----------DE---NIKAEMLKLIP---------AAQFGEAQDIANAVTFFASDQSKYITGQ--TLNVDGG 243 (246)
T ss_dssp -----------CT---THHHHHHHTCT---------TCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -----------CH---HHHHHHHhcCC---------CCCCcCHHHHHHHHHHHcCchhcCCCCC--EEEECcC
Confidence 00 01111111111 23578999999999999975433 355 8998875
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-23 Score=193.62 Aligned_cols=202 Identities=15% Similarity=0.133 Sum_probs=139.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.+.+|+||||||+|+||++|+++|+++| ++|++++|..... ..+...++.++.+|+
T Consensus 20 ~~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~-----------------------~~~~~~~~~~~~~Dl 76 (236)
T 3qvo_A 20 QGHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKI-----------------------HKPYPTNSQIIMGDV 76 (236)
T ss_dssp --CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGS-----------------------CSSCCTTEEEEECCT
T ss_pred cCcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhh-----------------------cccccCCcEEEEecC
Confidence 3457899999999999999999999999 8999999865421 111234789999999
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCC
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDI 241 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~ 241 (479)
+|+++++++++ ++|+|||||+... ....+.++++++++.+.+ +||++||.++|+......
T Consensus 77 ~d~~~~~~~~~--~~D~vv~~a~~~~-----------------~~~~~~~~~~~~~~~~~~-~iV~iSS~~~~~~~~~~~ 136 (236)
T 3qvo_A 77 LNHAALKQAMQ--GQDIVYANLTGED-----------------LDIQANSVIAAMKACDVK-RLIFVLSLGIYDEVPGKF 136 (236)
T ss_dssp TCHHHHHHHHT--TCSEEEEECCSTT-----------------HHHHHHHHHHHHHHTTCC-EEEEECCCCC--------
T ss_pred CCHHHHHHHhc--CCCEEEEcCCCCc-----------------hhHHHHHHHHHHHHcCCC-EEEEEecceecCCCCccc
Confidence 99999999999 8999999998411 123567899999999987 999999999987643211
Q ss_pred cCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 242 EEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
.+. .......+...|..+|..+ +..|++++++|||.++++....
T Consensus 137 ~~~---------------~~~~~~~~~~~~~~~~~~l----~~~gi~~~~vrPg~i~~~~~~~----------------- 180 (236)
T 3qvo_A 137 VEW---------------NNAVIGEPLKPFRRAADAI----EASGLEYTILRPAWLTDEDIID----------------- 180 (236)
T ss_dssp -----------------------CGGGHHHHHHHHHH----HTSCSEEEEEEECEEECCSCCC-----------------
T ss_pred ccc---------------hhhcccchHHHHHHHHHHH----HHCCCCEEEEeCCcccCCCCcc-----------------
Confidence 110 0001122333444455544 3569999999999999874321
Q ss_pred cchHHHHHHHHhcCCCeEEecCCCc-eeccccHHHHHHHHHHHHhCCC-CCCCceEEEeCCC
Q 011707 322 GTALNRFCVQAAVGHPLTVYGKGGQ-TRGYLDIRDTVQCVELAIANPA-QPGEFRVFNQFTE 381 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~Dva~a~~~~~~~~~-~~g~~~~~ni~~~ 381 (479)
......+.. ...+++++|+|++++.++.++. ..+ ++|++++.
T Consensus 181 ----------------~~~~~~~~~~~~~~i~~~DvA~~i~~ll~~~~~~~g--~~~~i~~~ 224 (236)
T 3qvo_A 181 ----------------YELTSRNEPFKGTIVSRKSVAALITDIIDKPEKHIG--ENIGINQP 224 (236)
T ss_dssp ----------------CEEECTTSCCSCSEEEHHHHHHHHHHHHHSTTTTTT--EEEEEECS
T ss_pred ----------------eEEeccCCCCCCcEECHHHHHHHHHHHHcCcccccC--eeEEecCC
Confidence 011111111 2357999999999999999876 344 49999873
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=200.14 Aligned_cols=223 Identities=15% Similarity=0.114 Sum_probs=164.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+ ..++.++.+|++|
T Consensus 4 l~~k~vlITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~----~~~~~~~~~D~~~ 63 (263)
T 2a4k_A 4 LSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERLL----------------AEAVAAL----EAEAIAVVADVSD 63 (263)
T ss_dssp TTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHTC----CSSEEEEECCTTS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHh----cCceEEEEcCCCC
Confidence 5689999999999999999999999999999998864311 1111111 2468899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcCC-cceEEEeeccccccC
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ-ECHLVKLGTMGEYGT 236 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~-~~~~V~~SS~~v~g~ 236 (479)
.++++++++.. ++|+||||||...... ...+++++..++++|+.|+.++++++..... ..+||++||...++.
T Consensus 64 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~~ 143 (263)
T 2a4k_A 64 PKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGA 143 (263)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCCH
T ss_pred HHHHHHHHHHHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEecchhcCC
Confidence 99998887753 6899999999765332 2335566788999999999999999976521 239999999766521
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
+ ....|+.||++.+.+++.++.++ |+++++++||.|.++....
T Consensus 144 ~-------------------------~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~--------- 189 (263)
T 2a4k_A 144 F-------------------------GLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTAG--------- 189 (263)
T ss_dssp H-------------------------HHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGTT---------
T ss_pred C-------------------------CcHHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCcCcCchhhh---------
Confidence 1 25789999999999999998875 8999999999998874321
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.............+ ...+.+++|+|++++.++..+.. .|+ ++++.++
T Consensus 190 ----------~~~~~~~~~~~~~p---------~~~~~~p~dvA~~v~~l~s~~~~~~tG~--~i~vdgG 238 (263)
T 2a4k_A 190 ----------LPPWAWEQEVGASP---------LGRAGRPEEVAQAALFLLSEESAYITGQ--ALYVDGG 238 (263)
T ss_dssp ----------SCHHHHHHHHHTST---------TCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ----------cCHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCccccCCcCC--EEEECCC
Confidence 00112222222222 12478999999999999976433 354 8999875
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.8e-23 Score=198.90 Aligned_cols=231 Identities=15% Similarity=0.110 Sum_probs=169.4
Q ss_pred CCCCCCcEEEEEcCCc--hhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEE
Q 011707 81 NDPSKAKRVMIIGGDG--YCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYI 158 (479)
Q Consensus 81 ~~~~~~~~vLVtGatG--~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 158 (479)
...+++|+||||||+| +||.+++++|+++|++|++++|..... +.++...... .++.++.
T Consensus 25 ~~~l~~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~-----------------~~~~~~~~~~-~~~~~~~ 86 (296)
T 3k31_A 25 GMLMEGKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFK-----------------KRVDPLAESL-GVKLTVP 86 (296)
T ss_dssp CCTTTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGH-----------------HHHHHHHHHH-TCCEEEE
T ss_pred hhccCCCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHH-----------------HHHHHHHHhc-CCeEEEE
Confidence 3456899999999997 999999999999999999999864311 1111111111 3468899
Q ss_pred cccCChHHHHHHhhhc-----CCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEE
Q 011707 159 GDICDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVK 227 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~ 227 (479)
+|++|.++++++++.. ++|+||||||.... +....+.+++..++++|+.|+.++++++...- ...+||+
T Consensus 87 ~Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~ 166 (296)
T 3k31_A 87 CDVSDAESVDNMFKVLAEEWGSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILT 166 (296)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEE
T ss_pred cCCCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEE
Confidence 9999999999888754 79999999998642 22334566788899999999999999997642 1249999
Q ss_pred eeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCc
Q 011707 228 LGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDE 304 (479)
Q Consensus 228 ~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~ 304 (479)
+||...+. +......|+.||++.+.+++.++.++ |+++++++||.|..+....
T Consensus 167 isS~~~~~------------------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~ 222 (296)
T 3k31_A 167 LSYYGAEK------------------------VVPHYNVMGVCKAALEASVKYLAVDLGKQQIRVNAISAGPVRTLASSG 222 (296)
T ss_dssp EECGGGTS------------------------CCTTTTHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCCSSCCS
T ss_pred EEehhhcc------------------------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCcEEEEEEECCCcCchhhc
Confidence 99965542 22346889999999999999999885 8999999999999886432
Q ss_pred hhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 305 TAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.. .............+ ...+...+|+|++++.++..... .|+ ++++.++
T Consensus 223 ~~-----------------~~~~~~~~~~~~~p---------~~r~~~pedvA~~v~fL~s~~a~~itG~--~i~vdGG 273 (296)
T 3k31_A 223 IS-----------------DFHYILTWNKYNSP---------LRRNTTLDDVGGAALYLLSDLGRGTTGE--TVHVDCG 273 (296)
T ss_dssp CH-----------------HHHHHHHHHHHHST---------TSSCCCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred cc-----------------chHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHcCCccCCccCC--EEEECCC
Confidence 10 01122222222222 23467899999999999986443 455 9999875
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-23 Score=198.02 Aligned_cols=212 Identities=17% Similarity=0.103 Sum_probs=157.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|.... .......++.++.+|++|
T Consensus 14 ~~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~-----------------------~~~~~~~~~~~~~~Dv~d 70 (266)
T 3p19_A 14 SMKKLVVITGASSGIGEAIARRFSEEGHPLLLLARRVER-----------------------LKALNLPNTLCAQVDVTD 70 (266)
T ss_dssp -CCCEEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHH-----------------------HHTTCCTTEEEEECCTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHH-----------------------HHHhhcCCceEEEecCCC
Confidence 568999999999999999999999999999999985431 111122478899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
.++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++. +.+.+ +||++||...
T Consensus 71 ~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~g-~IV~isS~~~ 149 (266)
T 3p19_A 71 KYTFDTAITRAEKIYGPADAIVNNAGMMLLGQIDTQEANEWQRMFDVNVLGLLNGMQAVLAPMKARNCG-TIINISSIAG 149 (266)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGG
T ss_pred HHHHHHHHHHHHHHCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEEcChhh
Confidence 99998888754 6999999999865432 233556778899999999999877764 45555 9999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +......|+.||++.+.+++.++.++ |+++++++||.|..+......
T Consensus 150 ~~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~~---- 201 (266)
T 3p19_A 150 KK------------------------TFPDHAAYCGTKFAVHAISENVREEVAASNVRVMTIAPSAVKTELLSHTT---- 201 (266)
T ss_dssp TS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGCS----
T ss_pred CC------------------------CCCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeeCccccchhhccc----
Confidence 42 22346899999999999999999884 899999999999887532100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
............ .....+++++|+|++++.++.++..
T Consensus 202 -----------~~~~~~~~~~~~-----------~~~~r~~~pedvA~av~~l~~~~~~ 238 (266)
T 3p19_A 202 -----------SQQIKDGYDAWR-----------VDMGGVLAADDVARAVLFAYQQPQN 238 (266)
T ss_dssp -----------CHHHHHHHHHHH-----------HHTTCCBCHHHHHHHHHHHHHSCTT
T ss_pred -----------chhhhHHHHhhc-----------ccccCCCCHHHHHHHHHHHHcCCCC
Confidence 000111111100 0123578999999999999998654
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=198.39 Aligned_cols=235 Identities=16% Similarity=0.082 Sum_probs=161.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++|.+
T Consensus 2 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~~~~ 64 (256)
T 1geg_A 2 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATA----------------KAVASEINQ-AGGHAVAVKVDVSDRD 64 (256)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHH-TTCCEEEEECCTTSHH
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEEecCCCHH
Confidence 58999999999999999999999999999998864321 111111111 1346889999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cC-CcceEEEeeccccc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FR-QECHLVKLGTMGEY 234 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g-~~~~~V~~SS~~v~ 234 (479)
+++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++.. .+ .+ +||++||...+
T Consensus 65 ~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~ 143 (256)
T 1geg_A 65 QVFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGG-KIINACSQAGH 143 (256)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCE-EEEEECCGGGT
T ss_pred HHHHHHHHHHHHhCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCC-EEEEECchhhc
Confidence 998888643 6999999999754322 2335567788999999999999887754 34 44 99999996543
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
. +......|+.||++.+.+++.++.++ |+++++++||.|.++..... ...+
T Consensus 144 ~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--~~~~ 197 (256)
T 1geg_A 144 V------------------------GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEI--DRQV 197 (256)
T ss_dssp S------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHH--HHHH
T ss_pred C------------------------CCCCchhHHHHHHHHHHHHHHHHHHHHHcCeEEEEEEECCCccchhhhh--hhhc
Confidence 2 11236789999999999999998874 89999999999987631100 0000
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.... +.. .......+... .....+.+++|+|++++.++..+.. .|+ ++++.++
T Consensus 198 ~~~~---~~~---~~~~~~~~~~~---------~p~~r~~~p~dvA~~v~~l~s~~~~~~tG~--~i~vdGG 252 (256)
T 1geg_A 198 SEAA---GKP---LGYGTAEFAKR---------ITLGRLSEPEDVAACVSYLASPDSDYMTGQ--SLLIDGG 252 (256)
T ss_dssp HHHH---TCC---TTHHHHHHHTT---------CTTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESSS
T ss_pred cccc---cCC---hHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCccccCCCCC--EEEeCCC
Confidence 0000 000 00011111111 1123578999999999999876433 455 8998875
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=9.3e-23 Score=196.06 Aligned_cols=259 Identities=12% Similarity=0.031 Sum_probs=171.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|+++++............-.......+.+..+.+. ..+.++.++.+|++
T Consensus 8 ~l~~k~~lVTGas~gIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv~ 86 (286)
T 3uve_A 8 RVEGKVAFVTGAARGQGRSHAVRLAQEGADIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVK-GHNRRIVTAEVDVR 86 (286)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHH-TTTCCEEEEECCTT
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeccccccccccccccccCCHHHHHHHHHHHh-hcCCceEEEEcCCC
Confidence 45789999999999999999999999999999999863221110000000000111112222222 22457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~ 231 (479)
|+++++++++.. ++|+||||||..... ....+.+++.+++++|+.|+.++++++... +...+||++||.
T Consensus 87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~g~iv~isS~ 166 (286)
T 3uve_A 87 DYDALKAAVDSGVEQLGRLDIIVANAGIGNGGDTLDKTSEEDWTEMIDINLAGVWKTVKAGVPHMIAGGRGGSIILTSSV 166 (286)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCCcEEEEECch
Confidence 999998887643 799999999976543 233456678889999999999999987542 322399999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +......|+.||++.+.+++.++.+ +|+++++++||.|..+........
T Consensus 167 ~~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~ 222 (286)
T 3uve_A 167 GGLK------------------------AYPHTGHYVAAKHGVVGLMRAFGVELGQHMIRVNSVHPTHVKTPMLHNEGTF 222 (286)
T ss_dssp GGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBSSTTTSSHHHH
T ss_pred hhcc------------------------CCCCccHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccCCcccccchh
Confidence 5542 2234688999999999999999988 489999999999998865432110
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
..+..... .............. .... ..+.+++|+|++++.++..... .|+ ++++.++
T Consensus 223 ~~~~~~~~-----~~~~~~~~~~~~~~-------~~~p-~r~~~p~dvA~~v~fL~s~~a~~itG~--~i~vdGG 282 (286)
T 3uve_A 223 KMFRPDLE-----NPGPDDMAPICQMF-------HTLP-IPWVEPIDISNAVLFFASDEARYITGV--TLPIDAG 282 (286)
T ss_dssp HHHCTTSS-----SCCHHHHHHHHHTT-------CSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred hhcccccc-----ccchhhHHHHHHhh-------hccC-CCcCCHHHHHHHHHHHcCccccCCcCC--EEeECCc
Confidence 00000000 00000000000011 1112 4678999999999999976543 355 9999875
|
| >4iiu_A 3-oxoacyl-[acyl-carrier protein] reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAP; 2.10A {Escherichia coli} PDB: 4iiv_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.7e-23 Score=197.72 Aligned_cols=228 Identities=13% Similarity=0.063 Sum_probs=167.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|+++++..... ..+..+.+.. .+.++.++.+|++
T Consensus 23 ~l~~k~vlVTGas~gIG~~la~~l~~~G~~v~i~~~r~~~~---------------~~~~~~~l~~-~~~~~~~~~~Dl~ 86 (267)
T 4iiu_A 23 NAMSRSVLVTGASKGIGRAIARQLAADGFNIGVHYHRDAAG---------------AQETLNAIVA-NGGNGRLLSFDVA 86 (267)
T ss_dssp --CCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---------------HHHHHHHHHH-TTCCEEEEECCTT
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCchHH---------------HHHHHHHHHh-cCCceEEEEecCC
Confidence 45688999999999999999999999999998776543211 1112222221 2457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH-----HcCCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK-----EFRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~-----~~g~~~~~V~~SS~ 231 (479)
|.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++. +.+.+ +||++||.
T Consensus 87 ~~~~~~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~g-~iv~isS~ 165 (267)
T 4iiu_A 87 NREQCREVLEHEIAQHGAWYGVVSNAGIARDAAFPALSNDDWDAVIHTNLDSFYNVIQPCIMPMIGARQGG-RIITLSSV 165 (267)
T ss_dssp CHHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCE-EEEEECCH
T ss_pred CHHHHHHHHHHHHHHhCCccEEEECCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCc-EEEEEcch
Confidence 999988887753 7999999999865432 233566778899999999999999874 34444 99999995
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +..+...|+.||++.+.+++.++.++ |+++++++||.|..+.....
T Consensus 166 ~~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~--- 218 (267)
T 4iiu_A 166 SGVM------------------------GNRGQVNYSAAKAGIIGATKALAIELAKRKITVNCIAPGLIDTGMIEME--- 218 (267)
T ss_dssp HHHH------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSTTCCCC---
T ss_pred Hhcc------------------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCeEEEEEEEeeecCCccccc---
Confidence 4432 12346899999999999999999885 89999999999998864321
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
...........+ ...+.+++|+|++++.++..... .|+ ++++.++.
T Consensus 219 -----------------~~~~~~~~~~~p---------~~~~~~~edva~~~~~L~s~~~~~itG~--~i~vdGG~ 266 (267)
T 4iiu_A 219 -----------------ESALKEAMSMIP---------MKRMGQAEEVAGLASYLMSDIAGYVTRQ--VISINGGM 266 (267)
T ss_dssp -----------------HHHHHHHHHTCT---------TCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTC
T ss_pred -----------------HHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCCcccCccCC--EEEeCCCc
Confidence 222333333322 23578899999999999976443 455 99998753
|
| >4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.6e-23 Score=190.60 Aligned_cols=224 Identities=14% Similarity=0.052 Sum_probs=166.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++||++|||||+++||++++++|+++|++|++++|..... ......++..+.+|++|
T Consensus 9 f~GK~alVTGas~GIG~aia~~la~~Ga~Vv~~~~~~~~~-----------------------~~~~~~~~~~~~~Dv~~ 65 (242)
T 4b79_A 9 YAGQQVLVTGGSSGIGAAIAMQFAELGAEVVALGLDADGV-----------------------HAPRHPRIRREELDITD 65 (242)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTST-----------------------TSCCCTTEEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHH-----------------------hhhhcCCeEEEEecCCC
Confidence 5799999999999999999999999999999999854321 11123578899999999
Q ss_pred hHHHHHHhhhc-CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeeccccccCCCC
Q 011707 164 FEFLSESFKSF-EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTMGEYGTPNI 239 (479)
Q Consensus 164 ~~~~~~~~~~~-~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~~v~g~~~~ 239 (479)
+++++++++.+ ++|++|||||+.. +....+.++|++++++|+.|++.+.+++..+ +.+ +||++||..-..
T Consensus 66 ~~~v~~~~~~~g~iDiLVNNAGi~~-~~~~~~~~~w~~~~~vNl~g~~~~~~~~~p~m~~~~G-~IVnisS~~~~~---- 139 (242)
T 4b79_A 66 SQRLQRLFEALPRLDVLVNNAGISR-DREEYDLATFERVLRLNLSAAMLASQLARPLLAQRGG-SILNIASMYSTF---- 139 (242)
T ss_dssp HHHHHHHHHHCSCCSEEEECCCCCC-GGGGGSHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCE-EEEEECCGGGTS----
T ss_pred HHHHHHHHHhcCCCCEEEECCCCCC-CcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCC-eEEEEeeccccC----
Confidence 99999999876 5999999999765 3445567789999999999999998877432 224 999999954321
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhcccC
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCNRLD 316 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~ 316 (479)
+......|+.||++...+.+.++.++ ||+++.|-||.|.-|......
T Consensus 140 --------------------~~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~m~~~~~---------- 189 (242)
T 4b79_A 140 --------------------GSADRPAYSASKGAIVQLTRSLACEYAAERIRVNAIAPGWIDTPLGAGLK---------- 189 (242)
T ss_dssp --------------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCC-----C----------
T ss_pred --------------------CCCCCHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCCCCChhhhccc----------
Confidence 12236789999999999999999985 899999999999766422100
Q ss_pred CCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCC
Q 011707 317 YDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQ 382 (479)
Q Consensus 317 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~ 382 (479)
. -......+....|+ .-+...+|+|.+++.++......-.++++.+.++.
T Consensus 190 -----~--~~~~~~~~~~~~Pl---------gR~g~peeiA~~v~fLaSd~a~~iTG~~l~VDGG~ 239 (242)
T 4b79_A 190 -----A--DVEATRRIMQRTPL---------ARWGEAPEVASAAAFLCGPGASFVTGAVLAVDGGY 239 (242)
T ss_dssp -----C--CHHHHHHHHHTCTT---------CSCBCHHHHHHHHHHHTSGGGTTCCSCEEEESTTG
T ss_pred -----C--CHHHHHHHHhcCCC---------CCCcCHHHHHHHHHHHhCchhcCccCceEEECccH
Confidence 0 01223333333332 24567899999999998655443223488887753
|
| >3ezl_A Acetoacetyl-COA reductase; ssgcid, acetyacetyl-COA reductase, oxidoreductase, structural genomics; HET: P4C; 2.25A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.6e-24 Score=200.25 Aligned_cols=229 Identities=13% Similarity=0.074 Sum_probs=164.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..++|+||||||+|+||.+++++|+++|++|+++++..... ..+..+.... .+.++.++.+|++
T Consensus 10 ~~~~k~vlITGas~giG~~ia~~l~~~G~~v~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~Dv~ 73 (256)
T 3ezl_A 10 VMSQRIAYVTGGMGGIGTSICQRLHKDGFRVVAGCGPNSPR---------------RVKWLEDQKA-LGFDFYASEGNVG 73 (256)
T ss_dssp ---CEEEEETTTTSHHHHHHHHHHHHTTEEEEEEECTTCSS---------------HHHHHHHHHH-TTCCCEEEECCTT
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHH---------------HHHHHHHHHh-cCCeeEEEecCCC
Confidence 45789999999999999999999999999999988533211 1111112211 2357889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~ 232 (479)
|.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++ ++.+.+ +||++||..
T Consensus 74 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~ 152 (256)
T 3ezl_A 74 DWDSTKQAFDKVKAEVGEIDVLVNNAGITRDVVFRKMTREDWQAVIDTNLTSLFNVTKQVIDGMVERGWG-RIINISSVN 152 (256)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEEcchh
Confidence 999998888754 6899999999765332 23355677889999999998887776 344555 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +..+...|+.||++.+.+++.++.+ .|+++++++||.|..+....
T Consensus 153 ~~~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----- 203 (256)
T 3ezl_A 153 GQK------------------------GQFGQTNYSTAKAGIHGFTMSLAQEVATKGVTVNTVSPGYIGTDMVKA----- 203 (256)
T ss_dssp GGG------------------------SCSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHT-----
T ss_pred hcc------------------------CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCEEEEEEECcccCccccc-----
Confidence 442 2234689999999999999999988 48999999999997763210
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
........+.... ....+.+++|+|++++.++..... .|+ ++++.++.
T Consensus 204 --------------~~~~~~~~~~~~~---------~~~~~~~~~dva~~~~~l~s~~~~~~tG~--~i~vdgG~ 253 (256)
T 3ezl_A 204 --------------IRPDVLEKIVATI---------PVRRLGSPDEIGSIVAWLASEESGFSTGA--DFSLNGGL 253 (256)
T ss_dssp --------------SCHHHHHHHHHHS---------TTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTS
T ss_pred --------------cCHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCCcccCCcCc--EEEECCCE
Confidence 1122233332222 223577899999999999865433 455 99998753
|
| >3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=202.09 Aligned_cols=255 Identities=15% Similarity=0.094 Sum_probs=169.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCC-ccchhhhhhhhhcccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLT-PIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.+++|+||||||+|+||.+++++|+++|++|+++++....... .... ....+.+..+.+. ..+.++.++.+|+
T Consensus 43 ~l~gk~~lVTGas~GIG~aia~~la~~G~~Vv~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Dv 116 (317)
T 3oec_A 43 RLQGKVAFITGAARGQGRTHAVRLAQDGADIVAIDLCRQQPNL-----DYAQGSPEELKETVRLVE-EQGRRIIARQADV 116 (317)
T ss_dssp TTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECCCCCTTC-----CSCCCCHHHHHHHHHHHH-HTTCCEEEEECCT
T ss_pred ccCCCEEEEeCCCcHHHHHHHHHHHHCCCeEEEEecccccccc-----cccccCHHHHHHHHHHHH-hcCCeEEEEECCC
Confidence 4578999999999999999999999999999999875321100 0000 0011112222222 1246789999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
+|+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++.. .+...+||++||.
T Consensus 117 ~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~~g~Iv~isS~ 196 (317)
T 3oec_A 117 RDLASLQAVVDEALAEFGHIDILVSNVGISNQGEVVSLTDQQWSDILQTNLIGAWHACRAVLPSMIERGQGGSVIFVSST 196 (317)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCSCEEEEEECCG
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCCCCEEEEECcH
Confidence 9999998888754 7999999999865432 2335567888999999999999998844 3322489999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +......|+.||++.+.+++.++.++ |+++++++||.|.++........
T Consensus 197 ~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~ 252 (317)
T 3oec_A 197 VGLR------------------------GAPGQSHYAASKHGVQGLMLSLANEVGRHNIRVNSVNPGAVNTEMALNEKLL 252 (317)
T ss_dssp GGSS------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHCHHHH
T ss_pred HhcC------------------------CCCCCcchHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcccCccccchhhh
Confidence 5442 22346899999999999999999985 89999999999988742111000
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
..+.... . ...... ........ . .....|++++|+|++++.++..... .|+ ++++.++.
T Consensus 253 ~~~~~~~--~---~~~~~~-~~~~~~~~------~-~~p~~~~~pedvA~av~fL~s~~a~~itG~--~i~vdGG~ 313 (317)
T 3oec_A 253 KMFLPHL--E---NPTRED-AAELFSQL------T-LLPIPWVEPEDVSNAVAWLASDEARYIHGA--AIPVDGGQ 313 (317)
T ss_dssp HHHCTTC--S---SCCHHH-HHHHHTTT------C-SSSSSSBCHHHHHHHHHHHTSGGGTTCCSC--EEEESTTG
T ss_pred hhhhhhc--c---ccchhH-HHHHHhhh------c-cCCCCCCCHHHHHHHHHHHcCCcccCCCCC--EEEECcch
Confidence 0000000 0 000000 01111110 0 1115789999999999998865443 455 99998753
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-24 Score=201.93 Aligned_cols=234 Identities=12% Similarity=0.004 Sum_probs=161.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|+++++..+.... +.+..+.+.. .+.++.++.+|++
T Consensus 8 ~l~~k~vlVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~-------------~~~~~~~~~~-~~~~~~~~~~Dv~ 73 (262)
T 3ksu_A 8 DLKNKVIVIAGGIKNLGALTAKTFALESVNLVLHYHQAKDSDT-------------ANKLKDELED-QGAKVALYQSDLS 73 (262)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHTTSSCEEEEEESCGGGHHH-------------HHHHHHHHHT-TTCEEEEEECCCC
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecCccCHHH-------------HHHHHHHHHh-cCCcEEEEECCCC
Confidence 4678999999999999999999999999999999875432110 1111222221 2457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc--CCcceEEEeeccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF--RQECHLVKLGTMGEY 234 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--g~~~~~V~~SS~~v~ 234 (479)
|.++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++... +.+ +||++||...+
T Consensus 74 d~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g-~iv~isS~~~~ 152 (262)
T 3ksu_A 74 NEEEVAKLFDFAEKEFGKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNG-HIITIATSLLA 152 (262)
T ss_dssp SHHHHHHHHHHHHHHHCSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEE-EEEEECCCHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCC-EEEEEechhhc
Confidence 999998888753 6999999999765433 23356678889999999999999999874 333 89999996554
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
... .....|+.||++.+.+++.++.++ |++++++.||.|..+..
T Consensus 153 ~~~------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~--------- 199 (262)
T 3ksu_A 153 AYT------------------------GFYSTYAGNKAPVEHYTRAASKELMKQQISVNAIAPGPMDTSFF--------- 199 (262)
T ss_dssp HHH------------------------CCCCC-----CHHHHHHHHHHHHTTTTTCEEEEEEECCCCTHHH---------
T ss_pred cCC------------------------CCCchhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeCCCcCccc---------
Confidence 321 225689999999999999999986 79999999999865421
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCc
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQF 383 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~ 383 (479)
...........+........+..++|+|++++.++.. ...-.++++++.|+..
T Consensus 200 ------------------~~~~~~~~~~~~~~~~~~~r~~~pedvA~~v~~L~s~-~~~itG~~i~vdGg~~ 252 (262)
T 3ksu_A 200 ------------------YGQETKESTAFHKSQAMGNQLTKIEDIAPIIKFLTTD-GWWINGQTIFANGGYT 252 (262)
T ss_dssp ------------------HTCC------------CCCCSCCGGGTHHHHHHHHTT-TTTCCSCEEEESTTCC
T ss_pred ------------------cccCchHHHHHHHhcCcccCCCCHHHHHHHHHHHcCC-CCCccCCEEEECCCcc
Confidence 0000000111111222334678999999999999986 3322234999988643
|
| >1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=195.73 Aligned_cols=219 Identities=15% Similarity=0.080 Sum_probs=158.0
Q ss_pred CCCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 81 NDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 81 ~~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
...+++|+||||||+|+||.+++++|+++|++|++++|... ..+.+ ..+.++ +|
T Consensus 14 ~~~~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~--------------------~~~~~-----~~~~~~-~D 67 (249)
T 1o5i_A 14 ELGIRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEE--------------------LLKRS-----GHRYVV-CD 67 (249)
T ss_dssp --CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHH--------------------HHHHT-----CSEEEE-CC
T ss_pred HhccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHH--------------------HHHhh-----CCeEEE-ee
Confidence 34568999999999999999999999999999999988531 11111 246667 99
Q ss_pred cCChHHHHHHhhhc-CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccccc
Q 011707 161 ICDFEFLSESFKSF-EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEY 234 (479)
Q Consensus 161 l~d~~~~~~~~~~~-~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~ 234 (479)
+ .++++++++.. ++|+||||||...... ...+++++..++++|+.|+.++.+++ ++.+.+ +||++||...+
T Consensus 68 ~--~~~~~~~~~~~~~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~ 144 (249)
T 1o5i_A 68 L--RKDLDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWG-RIVAITSFSVI 144 (249)
T ss_dssp T--TTCHHHHHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGT
T ss_pred H--HHHHHHHHHHhcCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEcchHhc
Confidence 9 45566666544 7999999999754332 23355677889999999988776554 455666 99999998766
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
.. ..+...|+.+|++.+.+++.++.+ .|+++++++||.|+++....
T Consensus 145 ~~------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~------- 193 (249)
T 1o5i_A 145 SP------------------------IENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKE------- 193 (249)
T ss_dssp SC------------------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHH-------
T ss_pred CC------------------------CCCCchHHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCCCccCcccc-------
Confidence 42 233689999999999999999887 48999999999999885210
Q ss_pred hcccCCCCcccchHHHHHH-HHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 312 CNRLDYDGVFGTALNRFCV-QAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
....... ...... ....+.+++|+|++++.++..+.. .|+ +|++.++.
T Consensus 194 ------------~~~~~~~~~~~~~~---------p~~~~~~~~dvA~~i~~l~s~~~~~~tG~--~~~vdgG~ 244 (249)
T 1o5i_A 194 ------------LLSEEKKKQVESQI---------PMRRMAKPEEIASVVAFLCSEKASYLTGQ--TIVVDGGL 244 (249)
T ss_dssp ------------HSCHHHHHHHHTTS---------TTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTC
T ss_pred ------------cchhhHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCccccCCCCC--EEEECCCc
Confidence 0001111 122211 124578999999999999875433 355 99998753
|
| >3tl3_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 1.85A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-24 Score=199.84 Aligned_cols=224 Identities=15% Similarity=0.105 Sum_probs=162.5
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+.+++|++|||||+|+||.+++++|+++|++|++++|.... ..+. .+.++.++.+|+
T Consensus 5 m~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~-------------------~~~~----~~~~~~~~~~D~ 61 (257)
T 3tl3_A 5 MEIRDAVAVVTGGASGLGLATTKRLLDAGAQVVVLDIRGED-------------------VVAD----LGDRARFAAADV 61 (257)
T ss_dssp -----CEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCHH-------------------HHHH----TCTTEEEEECCT
T ss_pred ceecCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCchHH-------------------HHHh----cCCceEEEECCC
Confidence 34678999999999999999999999999999999874321 1111 135789999999
Q ss_pred CChHHHHHHhhhc----CCCEEEEcccccCcccc-----cccccccchhhhhhHHHHHHHHHHHHHc-----------CC
Q 011707 162 CDFEFLSESFKSF----EPDAVVHFGEQRSAPYS-----MIDRSRAVFTQHNNVIGTLNVLFAMKEF-----------RQ 221 (479)
Q Consensus 162 ~d~~~~~~~~~~~----~~D~Vih~A~~~~~~~~-----~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-----------g~ 221 (479)
+|.++++++++.. ++|+||||||....... ..+++++.+++++|+.|+.++++++... +.
T Consensus 62 ~~~~~v~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~~~~~~~ 141 (257)
T 3tl3_A 62 TDEAAVASALDLAETMGTLRIVVNCAGTGNAIRVLSRDGVFSLAAFRKIVDINLVGSFNVLRLAAERIAKTEPVGPNAEE 141 (257)
T ss_dssp TCHHHHHHHHHHHHHHSCEEEEEECGGGSHHHHHHHHTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC--CCCC
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEECCCCCCCcccccccccCCHHHHHHHHHHccHHHHHHHHHHHHHHHHhcccccccCC
Confidence 9999998887643 79999999997542211 1355667889999999999999988653 22
Q ss_pred cceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeee
Q 011707 222 ECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVY 298 (479)
Q Consensus 222 ~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~ 298 (479)
..+||++||...+. +..+...|+.||++.+.+++.++.++ |+++++++||.|.
T Consensus 142 ~g~iv~isS~~~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gI~vn~v~PG~v~ 197 (257)
T 3tl3_A 142 RGVIINTASVAAFD------------------------GQIGQAAYSASKGGVVGMTLPIARDLASHRIRVMTIAPGLFD 197 (257)
T ss_dssp SEEEEEECCCC--C------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC
T ss_pred CcEEEEEcchhhcC------------------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEEEecCcc
Confidence 23899999965442 11235789999999999999999884 7999999999998
Q ss_pred cCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEe
Q 011707 299 GVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQ 378 (479)
Q Consensus 299 Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni 378 (479)
.+.... .............+. ...+.+++|+|++++.++..+...|+ ++++
T Consensus 198 T~~~~~-------------------~~~~~~~~~~~~~~~--------~~r~~~p~dva~~v~~l~s~~~itG~--~i~v 248 (257)
T 3tl3_A 198 TPLLAS-------------------LPEEARASLGKQVPH--------PSRLGNPDEYGALAVHIIENPMLNGE--VIRL 248 (257)
T ss_dssp CTTC----------------------CHHHHHHHHHTSSS--------SCSCBCHHHHHHHHHHHHHCTTCCSC--EEEE
T ss_pred Chhhhh-------------------ccHHHHHHHHhcCCC--------CCCccCHHHHHHHHHHHhcCCCCCCC--EEEE
Confidence 875321 011222222222111 13578999999999999988666676 9999
Q ss_pred CCC
Q 011707 379 FTE 381 (479)
Q Consensus 379 ~~~ 381 (479)
.++
T Consensus 249 dGG 251 (257)
T 3tl3_A 249 DGA 251 (257)
T ss_dssp STT
T ss_pred CCC
Confidence 875
|
| >1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A | Back alignment and structure |
|---|
Probab=99.91 E-value=8.4e-24 Score=198.88 Aligned_cols=216 Identities=15% Similarity=0.112 Sum_probs=156.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... ..+..+.+|++
T Consensus 12 ~l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------------------~~~~~~~~D~~ 63 (247)
T 1uzm_A 12 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGAP----------------------------KGLFGVEVDVT 63 (247)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCCC----------------------------TTSEEEECCTT
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHH----------------------------HHhcCeeccCC
Confidence 45789999999999999999999999999999998853210 11123789999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++.. .+.+ +||++||..
T Consensus 64 ~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~ 142 (247)
T 1uzm_A 64 DSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFG-RMIFIGSVS 142 (247)
T ss_dssp CHHHHHHHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCC-EEEEECCHh
Confidence 999998887643 6899999999754322 2335567788999999999999998854 4555 999999964
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +..+...|+.||++.+.+++.++.++ |+++++++||.|.++....
T Consensus 143 ~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~----- 193 (247)
T 1uzm_A 143 GLW------------------------GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTRA----- 193 (247)
T ss_dssp C-----------------------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH-----
T ss_pred hcc------------------------CCCCChhHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCCcccchhh-----
Confidence 331 11236789999999999999999874 8999999999997652100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
............. ....+.+++|+|++++.++..+.. .|+ ++++.++
T Consensus 194 --------------~~~~~~~~~~~~~---------p~~~~~~~~dvA~~~~~l~s~~~~~~~G~--~i~vdgG 242 (247)
T 1uzm_A 194 --------------LDERIQQGALQFI---------PAKRVGTPAEVAGVVSFLASEDASYISGA--VIPVDGG 242 (247)
T ss_dssp --------------SCHHHHHHHGGGC---------TTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred --------------cCHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCccccCCcCC--EEEECCC
Confidence 0011111111111 123578999999999999975433 454 9999875
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=200.66 Aligned_cols=240 Identities=14% Similarity=0.053 Sum_probs=166.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... ..+..+.+.. .+.++.++.+|++
T Consensus 26 ~~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---------------~~~~~~~~~~-~~~~~~~~~~D~~ 89 (283)
T 1g0o_A 26 SLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTES---------------AEEVVAAIKK-NGSDAACVKANVG 89 (283)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---------------HHHHHHHHHH-TTCCEEEEECCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH---------------HHHHHHHHHH-hCCCeEEEEcCCC
Confidence 45789999999999999999999999999999998864311 0011111111 2357889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc--CCcceEEEeeccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF--RQECHLVKLGTMGEY 234 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--g~~~~~V~~SS~~v~ 234 (479)
|.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++... +.+ +||++||...+
T Consensus 90 ~~~~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g-~iv~isS~~~~ 168 (283)
T 1g0o_A 90 VVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGG-RLILMGSITGQ 168 (283)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTC-EEEEECCGGGT
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCC-eEEEEechhhc
Confidence 999888877643 6999999999764322 22355677889999999999999999876 444 99999996543
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
... ..+...|+.||++.+.+++.++.++ |+++++++||.|.++.... .
T Consensus 169 ~~~-----------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~------~ 219 (283)
T 1g0o_A 169 AKA-----------------------VPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYHA------V 219 (283)
T ss_dssp CSS-----------------------CSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHH------H
T ss_pred cCC-----------------------CCCCcchHHHHHHHHHHHHHHHHHhcccCeEEEEEecCcccchhhhh------h
Confidence 211 1126789999999999999999874 8999999999998763110 0
Q ss_pred hcccCCCCcccchHHHHHHHHhc--CCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAV--GHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.....+.+. ..-......+.. .. ....+.+.+|+|++++.++..... .|+ ++++.++
T Consensus 220 ~~~~~~~~~--~~~~~~~~~~~~~~~~---------p~~r~~~p~dvA~~v~~l~s~~~~~itG~--~i~vdgG 280 (283)
T 1g0o_A 220 CREYIPNGE--NLSNEEVDEYAAVQWS---------PLRRVGLPIDIARVVCFLASNDGGWVTGK--VIGIDGG 280 (283)
T ss_dssp GGGGSTTCT--TCCHHHHHHHHHHHSC---------TTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred hhhcccccc--ccCHHHHHHHHhhcCC---------CCCCCcCHHHHHHHHHHHhCccccCcCCC--EEEeCCC
Confidence 000000000 000111111211 11 123578999999999999976433 454 8998875
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=195.98 Aligned_cols=216 Identities=10% Similarity=0.047 Sum_probs=154.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
++|+||||||+|+||.+++++|+++| ++|++++|..... +.+ .++.+.++.++.+|++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~g~~~~V~~~~r~~~~~-----------------~~l---~~~~~~~~~~~~~D~~ 61 (250)
T 1yo6_A 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVEKA-----------------TEL---KSIKDSRVHVLPLTVT 61 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGGGC-----------------HHH---HTCCCTTEEEEECCTT
T ss_pred CCCEEEEecCCchHHHHHHHHHHhcCCCcEEEEEecCHHHH-----------------HHH---HhccCCceEEEEeecC
Confidence 47899999999999999999999999 9999999864321 011 1112457899999999
Q ss_pred ChHHHHHHhhhc-------CCCEEEEcccccC-ccc-ccccccccchhhhhhHHHHHHHHHHHHHc----------C---
Q 011707 163 DFEFLSESFKSF-------EPDAVVHFGEQRS-APY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----------R--- 220 (479)
Q Consensus 163 d~~~~~~~~~~~-------~~D~Vih~A~~~~-~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----------g--- 220 (479)
|.++++++++.. ++|+||||||... ... ...+.+++..++++|+.|+.++++++... +
T Consensus 62 ~~~~~~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 141 (250)
T 1yo6_A 62 CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLS 141 (250)
T ss_dssp CHHHHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCcEEEECCcccCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccccCCCccc
Confidence 999998888743 7999999999765 221 22344567788999999999999887543 3
Q ss_pred --CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecC
Q 011707 221 --QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQG 295 (479)
Q Consensus 221 --~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~ 295 (479)
.+ +||++||...+..... +. .+..+...|+.+|++.+.+++.++.++ |+++++++||
T Consensus 142 ~~~~-~iv~isS~~~~~~~~~---~~--------------~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg 203 (250)
T 1yo6_A 142 VSRA-AVITISSGLGSITDNT---SG--------------SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPG 203 (250)
T ss_dssp TTTC-EEEEECCGGGCSTTCC---ST--------------TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECC
T ss_pred CCCc-EEEEeccCccccCCcc---cc--------------cccCCccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEcCC
Confidence 44 9999999755432210 00 122457899999999999999999886 8999999999
Q ss_pred eeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCc
Q 011707 296 VVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEF 373 (479)
Q Consensus 296 ~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~ 373 (479)
.|.++... . ..+++.+|+|++++.++..... .|+
T Consensus 204 ~v~t~~~~-----------------------~--------------------~~~~~~~~~a~~~~~~~~~~~~~~~G~- 239 (250)
T 1yo6_A 204 WVQTNLGG-----------------------K--------------------NAALTVEQSTAELISSFNKLDNSHNGR- 239 (250)
T ss_dssp CC--------------------------------------------------------HHHHHHHHHHHTTCCGGGTTC-
T ss_pred ceecCCCC-----------------------C--------------------CCCCCHHHHHHHHHHHHhcccccCCCe-
Confidence 98776310 0 1357899999999999987653 344
Q ss_pred eEEEeCCCCc
Q 011707 374 RVFNQFTEQF 383 (479)
Q Consensus 374 ~~~ni~~~~~ 383 (479)
.+.+.++.+
T Consensus 240 -~~~~~g~~~ 248 (250)
T 1yo6_A 240 -FFMRNLKPY 248 (250)
T ss_dssp -EEETTEEEC
T ss_pred -EEEECCcCC
Confidence 666554433
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.3e-23 Score=194.24 Aligned_cols=230 Identities=12% Similarity=0.145 Sum_probs=168.2
Q ss_pred CCCCcEEEEEcCCch--hhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhc-ccCCCceeEEEc
Q 011707 83 PSKAKRVMIIGGDGY--CGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK-SLTGKNIELYIG 159 (479)
Q Consensus 83 ~~~~~~vLVtGatG~--iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~ 159 (479)
.+++|+||||||+|+ ||.+++++|+++|++|++++|..+.. +...... .....++.++.+
T Consensus 4 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~-----------------~~~~~~~~~~~~~~~~~~~~ 66 (266)
T 3oig_A 4 SLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLE-----------------KSVHELAGTLDRNDSIILPC 66 (266)
T ss_dssp CCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGH-----------------HHHHHHHHTSSSCCCEEEEC
T ss_pred ccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHH-----------------HHHHHHHHhcCCCCceEEeC
Confidence 457899999999987 99999999999999999998764311 1122221 222237899999
Q ss_pred ccCChHHHHHHhhhc-----CCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHcCC-cceEEEe
Q 011707 160 DICDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ-ECHLVKL 228 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~-~~~~V~~ 228 (479)
|++|.++++++++.. ++|+||||||.... .....+.+++..++++|+.|+.++++++...-. +.+||++
T Consensus 67 D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~i 146 (266)
T 3oig_A 67 DVTNDAEIETCFASIKEQVGVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTL 146 (266)
T ss_dssp CCSSSHHHHHHHHHHHHHHSCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEE
Confidence 999999998888754 79999999997641 223345566788899999999999999976521 2489999
Q ss_pred eccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCch
Q 011707 229 GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 229 SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~ 305 (479)
||...+. +......|+.||++.+.+++.++.++ |+++++++||.|..+.....
T Consensus 147 sS~~~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~ 202 (266)
T 3oig_A 147 TYLGGEL------------------------VMPNYNVMGVAKASLDASVKYLAADLGKENIRVNSISAGPIRTLSAKGI 202 (266)
T ss_dssp ECGGGTS------------------------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC
T ss_pred ecccccc------------------------cCCCcchhHHHHHHHHHHHHHHHHHHhhcCcEEEEEecCcccccccccc
Confidence 9965442 22346899999999999999999885 79999999999987643211
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.....+...+....+ ...+.+++|+|++++.++..... .|+ ++++.++
T Consensus 203 -----------------~~~~~~~~~~~~~~~---------~~~~~~p~dva~~v~~l~s~~~~~~tG~--~i~vdGG 252 (266)
T 3oig_A 203 -----------------SDFNSILKDIEERAP---------LRRTTTPEEVGDTAAFLFSDMSRGITGE--NLHVDSG 252 (266)
T ss_dssp -----------------TTHHHHHHHHHHHST---------TSSCCCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -----------------cchHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHcCCchhcCcCC--EEEECCC
Confidence 001122222222211 23568899999999999986443 455 9999875
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-23 Score=198.00 Aligned_cols=235 Identities=14% Similarity=0.109 Sum_probs=165.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCC---ceeEEEcc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGK---NIELYIGD 160 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~D 160 (479)
+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+... +. ++.++.+|
T Consensus 4 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~-~~~~~~~~~~~~D 66 (280)
T 1xkq_A 4 FSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSERL----------------EETRQIILKS-GVSEKQVNSVVAD 66 (280)
T ss_dssp TTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHTT-TCCGGGEEEEECC
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHHc-CCCCcceEEEEec
Confidence 5689999999999999999999999999999999864321 1111111111 22 68899999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCccc-----ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEE
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-----SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLV 226 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-----~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V 226 (479)
++|+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++... + + +||
T Consensus 67 v~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g-~iv 144 (280)
T 1xkq_A 67 VTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASK-G-EIV 144 (280)
T ss_dssp TTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C-EEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCCCCcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHhhcCC-C-cEE
Confidence 99999988887643 6999999999764322 23355667889999999999999988643 3 4 999
Q ss_pred EeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCC
Q 011707 227 KLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTD 303 (479)
Q Consensus 227 ~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~ 303 (479)
++||...+... ..+...|+.||++.+.+++.++.+ +|+++++++||.|+++...
T Consensus 145 ~isS~~~~~~~-----------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~ 201 (280)
T 1xkq_A 145 NVSSIVAGPQA-----------------------QPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTN 201 (280)
T ss_dssp EECCGGGSSSC-----------------------CCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHH
T ss_pred EecCccccCCC-----------------------CCcccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeeCcCcCCccc
Confidence 99997655321 023678999999999999999876 4899999999999987421
Q ss_pred chhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC---CCCCCceEEEeCC
Q 011707 304 ETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP---AQPGEFRVFNQFT 380 (479)
Q Consensus 304 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~---~~~g~~~~~ni~~ 380 (479)
....... .......+....... .....+.+++|+|++++.++..+ ...|+ ++++.+
T Consensus 202 ~~~~~~~----------~~~~~~~~~~~~~~~---------~p~~~~~~pedvA~~v~~l~s~~~~~~~tG~--~i~vdg 260 (280)
T 1xkq_A 202 AMGMPDQ----------ASQKFYNFMASHKEC---------IPIGAAGKPEHIANIILFLADRNLSFYILGQ--SIVADG 260 (280)
T ss_dssp HTTCCHH----------HHHHHHHHHHHCTTT---------CTTSSCBCHHHHHHHHHHHHCHHHHTTCCSC--EEEEST
T ss_pred ccccccc----------cccchHHHHHHHHcC---------CCCCCCCCHHHHHHHHHHhcCcccccCccCC--eEEECC
Confidence 1000000 000001122222111 12235789999999999998654 23455 999987
Q ss_pred C
Q 011707 381 E 381 (479)
Q Consensus 381 ~ 381 (479)
+
T Consensus 261 G 261 (280)
T 1xkq_A 261 G 261 (280)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-23 Score=198.94 Aligned_cols=240 Identities=13% Similarity=0.119 Sum_probs=169.0
Q ss_pred CCCCCcEEEEEcCC--chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEc
Q 011707 82 DPSKAKRVMIIGGD--GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIG 159 (479)
Q Consensus 82 ~~~~~~~vLVtGat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 159 (479)
...++|+||||||+ |+||.+++++|+++|++|++++|..+. .+.++.+.... .++.++.+
T Consensus 10 ~~~~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~-----------------~~~~~~~~~~~-~~~~~~~~ 71 (271)
T 3ek2_A 10 GFLDGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRF-----------------KDRITEFAAEF-GSELVFPC 71 (271)
T ss_dssp CTTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGG-----------------HHHHHHHHHHT-TCCCEEEC
T ss_pred cccCCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhh-----------------HHHHHHHHHHc-CCcEEEEC
Confidence 35679999999999 999999999999999999999886331 11222221111 35889999
Q ss_pred ccCChHHHHHHhhhc-----CCCEEEEcccccCc-----cccc-ccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEE
Q 011707 160 DICDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSM-IDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVK 227 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~-~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~ 227 (479)
|++|.++++++++.. ++|+||||||.... .... .+.+++..++++|+.|+.++++++...- ...+||+
T Consensus 72 Dv~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~ 151 (271)
T 3ek2_A 72 DVADDAQIDALFASLKTHWDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLT 151 (271)
T ss_dssp CTTCHHHHHHHHHHHHHHCSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEE
Confidence 999999999888754 68999999997643 1112 3555678899999999999999997642 1238999
Q ss_pred eeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCc
Q 011707 228 LGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDE 304 (479)
Q Consensus 228 ~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~ 304 (479)
+||...+. +......|+.||++.+.+++.++.++ |+++++++||.|..+....
T Consensus 152 isS~~~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~ 207 (271)
T 3ek2_A 152 LSYLGAER------------------------AIPNYNTMGLAKAALEASVRYLAVSLGAKGVRVNAISAGPIKTLAASG 207 (271)
T ss_dssp EECGGGTS------------------------BCTTTTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCC-----CC
T ss_pred Eecccccc------------------------CCCCccchhHHHHHHHHHHHHHHHHHHhcCcEEEEEecCcccchhhhc
Confidence 99965542 22346899999999999999999875 8999999999998875432
Q ss_pred hhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC-Cc
Q 011707 305 TAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE-QF 383 (479)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~-~~ 383 (479)
.. ....+........ ....+..++|+|++++.++......-.++++++.++ ..
T Consensus 208 ~~-----------------~~~~~~~~~~~~~---------~~~~~~~pedva~~i~~l~s~~~~~~tG~~i~vdgG~~~ 261 (271)
T 3ek2_A 208 IK-----------------SFGKILDFVESNS---------PLKRNVTIEQVGNAGAFLLSDLASGVTAEVMHVDSGFNA 261 (271)
T ss_dssp CH-----------------HHHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGTTCCSEEEEESTTGGG
T ss_pred cc-----------------chHHHHHHHHhcC---------CcCCCCCHHHHHHHHHHHcCcccCCeeeeEEEECCCeee
Confidence 10 0122223222222 223567899999999999986443322349999985 35
Q ss_pred CHHHHH
Q 011707 384 SVNQLA 389 (479)
Q Consensus 384 s~~el~ 389 (479)
++.++.
T Consensus 262 ~~~~~~ 267 (271)
T 3ek2_A 262 VVGGMA 267 (271)
T ss_dssp BCCCC-
T ss_pred ehhhhh
Confidence 544443
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-23 Score=198.69 Aligned_cols=255 Identities=14% Similarity=0.085 Sum_probs=171.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|+++++........ .. ......+.+..+.+.. .+.++.++.+|++
T Consensus 25 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~ 99 (299)
T 3t7c_A 25 KVEGKVAFITGAARGQGRSHAITLAREGADIIAIDVCKQLDGVK-LP---MSTPDDLAETVRQVEA-LGRRIIASQVDVR 99 (299)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECCSCCTTCC-SC---CCCHHHHHHHHHHHHH-TTCCEEEEECCTT
T ss_pred ccCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeccccccccc-cc---ccCHHHHHHHHHHHHh-cCCceEEEECCCC
Confidence 46789999999999999999999999999999999863211000 00 0001112222222222 2457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~ 231 (479)
|.++++++++.. ++|+||||||..... ....+++++..++++|+.|+.++++++... +...+||++||.
T Consensus 100 ~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~~g~Iv~isS~ 179 (299)
T 3t7c_A 100 DFDAMQAAVDDGVTQLGRLDIVLANAALASEGTRLNRMDPKTWRDMIDVNLNGAWITARVAIPHIMAGKRGGSIVFTSSI 179 (299)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSCEEEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCcEEEEECCh
Confidence 999998888643 799999999976543 233466778899999999999999987543 322399999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +......|+.||++.+.+++.++.++ |+++++++||.|..+........
T Consensus 180 ~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~~~ 235 (299)
T 3t7c_A 180 GGLR------------------------GAENIGNYIASKHGLHGLMRTMALELGPRNIRVNIVCPSSVATPMLLNEPTY 235 (299)
T ss_dssp GGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCBSSTTTSSHHHH
T ss_pred hhcc------------------------CCCCcchHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCCccCccccccchh
Confidence 5542 22346899999999999999999986 89999999999998864321100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
..+.... . ......+....... .... ..+..++|+|++++.++..... .|+ ++++.++
T Consensus 236 ~~~~~~~--~---~~~~~~~~~~~~~~-------~~~p-~r~~~pedvA~~v~fL~s~~a~~itG~--~i~vdGG 295 (299)
T 3t7c_A 236 RMFRPDL--E---NPTVEDFQVASRQM-------HVLP-IPYVEPADISNAILFLVSDDARYITGV--SLPVDGG 295 (299)
T ss_dssp HHHCTTS--S---SCCHHHHHHHHHHH-------SSSS-CSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred hhhhhhh--c---cchhhHHHHHhhhh-------cccC-cCCCCHHHHHHHHHHHhCcccccCcCC--EEeeCCC
Confidence 0000000 0 00001110000000 0011 3578999999999999976543 355 9999875
|
| >2bd0_A Sepiapterin reductase; oxidoreductase; HET: NAP BIO; 1.70A {Chlorobium tepidum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.8e-23 Score=192.70 Aligned_cols=205 Identities=17% Similarity=0.140 Sum_probs=155.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC-------eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEE
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY-------EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYI 158 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~-------~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 158 (479)
+|+||||||+|+||.+++++|+++|+ +|++++|..... .+..+.+. ..+.++.++.
T Consensus 2 ~k~vlITGasggiG~~la~~l~~~G~~~~~~~~~V~~~~r~~~~~----------------~~~~~~~~-~~~~~~~~~~ 64 (244)
T 2bd0_A 2 KHILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAADL----------------EKISLECR-AEGALTDTIT 64 (244)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHH----------------HHHHHHHH-TTTCEEEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHhcCcccccceEEEEEeCCHHHH----------------HHHHHHHH-ccCCeeeEEE
Confidence 68999999999999999999999999 999998854311 11111111 1235788999
Q ss_pred cccCChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEe
Q 011707 159 GDICDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKL 228 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~ 228 (479)
+|++|+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++.. .+.+ +||++
T Consensus 65 ~D~~~~~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~-~iv~i 143 (244)
T 2bd0_A 65 ADISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSG-HIFFI 143 (244)
T ss_dssp CCTTSHHHHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEE
T ss_pred ecCCCHHHHHHHHHHHHHhCCCCCEEEEcCCcCCcCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC-EEEEE
Confidence 9999999998887642 6999999999764322 2234556788899999999999998843 3555 99999
Q ss_pred eccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCch
Q 011707 229 GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 229 SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~ 305 (479)
||...+.. ..+...|+.+|++.+.+++.++.+ .|++++++|||.|+++.....
T Consensus 144 sS~~~~~~------------------------~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~ 199 (244)
T 2bd0_A 144 TSVAATKA------------------------FRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGKV 199 (244)
T ss_dssp CCGGGTSC------------------------CTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCCC
T ss_pred ecchhcCC------------------------CCCCchhHHHHHHHHHHHHHHHHHhhccCcEEEEEECCCccchhhhhc
Confidence 99776532 234689999999999999988876 489999999999999853210
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
.. . . ...+++++|+|++++.++..+..
T Consensus 200 -----------------------------~~------~-~-~~~~~~~~dva~~~~~l~~~~~~ 226 (244)
T 2bd0_A 200 -----------------------------DD------E-M-QALMMMPEDIAAPVVQAYLQPSR 226 (244)
T ss_dssp -----------------------------CS------T-T-GGGSBCHHHHHHHHHHHHTSCTT
T ss_pred -----------------------------cc------c-c-cccCCCHHHHHHHHHHHHhCCcc
Confidence 00 0 0 12679999999999999986544
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=197.60 Aligned_cols=215 Identities=15% Similarity=0.161 Sum_probs=151.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+.+|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+ +.++.++.+|++|
T Consensus 26 ~~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~----------------~~~~~~~----~~~~~~~~~Dv~d 85 (272)
T 4dyv_A 26 TGKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDAL----------------QETAAEI----GDDALCVPTDVTD 85 (272)
T ss_dssp --CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHH----TSCCEEEECCTTS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHh----CCCeEEEEecCCC
Confidence 4689999999999999999999999999999998864321 1111111 3578899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHHc----CC-cceEEEeecc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQ-ECHLVKLGTM 231 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~-~~~~V~~SS~ 231 (479)
+++++++++.. ++|+||||||.... +....+.+++.+++++|+.|+.++++++... +. ..+||++||.
T Consensus 86 ~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS~ 165 (272)
T 4dyv_A 86 PDSVRALFTATVEKFGRVDVLFNNAGTGAPAIPMEDLTFAQWKQVVDTNLTGPFLCTQEAFRVMKAQEPRGGRIINNGSI 165 (272)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECCS
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCChhhCCHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCcEEEEECch
Confidence 99998888754 79999999998543 2333466678889999999999998877543 21 2399999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +..+...|+.||++.+.+++.++.++ |+++++++||.|..+....
T Consensus 166 ~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~---- 217 (272)
T 4dyv_A 166 SATS------------------------PRPYSAPYTATKHAITGLTKSTSLDGRVHDIACGQIDIGNADTPMAQK---- 217 (272)
T ss_dssp STTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEEECC----------
T ss_pred hhcC------------------------CCCCchHHHHHHHHHHHHHHHHHHHhCccCEEEEEEEECcccChhhhh----
Confidence 5442 22346899999999999999999884 8999999999998774221
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPG 371 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g 371 (479)
+. .+... .. .......+.+++|+|++++.++..+....
T Consensus 218 -------------------~~----~~~~~-~~-~~~~~~~~~~pedvA~~v~fL~s~~~~~~ 255 (272)
T 4dyv_A 218 -------------------MK----AGVPQ-AD-LSIKVEPVMDVAHVASAVVYMASLPLDAN 255 (272)
T ss_dssp -------------------------------------------CHHHHHHHHHHHHHSCTTSC
T ss_pred -------------------hc----ccchh-hh-hcccccCCCCHHHHHHHHHHHhCCCCcCc
Confidence 00 00000 00 01122357899999999999999876543
|
| >3qlj_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 1.80A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-24 Score=209.08 Aligned_cols=248 Identities=11% Similarity=0.109 Sum_probs=173.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|+++++......... .......+..+.+.. .+.++.++.+|++
T Consensus 24 ~l~gk~vlVTGas~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~------~~~~~~~~~~~~~~~-~~~~~~~~~~Dv~ 96 (322)
T 3qlj_A 24 VVDGRVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSPA------SGGSAAQSVVDEITA-AGGEAVADGSNVA 96 (322)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSSBT------CTTSHHHHHHHHHHH-TTCEEEEECCCTT
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCccccccccc------ccHHHHHHHHHHHHh-cCCcEEEEECCCC
Confidence 357899999999999999999999999999999987521100000 000011122222222 2457889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcCC---------cceEEE
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ---------ECHLVK 227 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~---------~~~~V~ 227 (479)
|.++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++..... ..+||+
T Consensus 97 d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~~~~~g~IV~ 176 (322)
T 3qlj_A 97 DWDQAAGLIQTAVETFGGLDVLVNNAGIVRDRMIANTSEEEFDAVIAVHLKGHFATMRHAAAYWRGLSKAGKAVDGRIIN 176 (322)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHccccCCCCCcEEEE
Confidence 999988887754 7999999999865432 2345667888999999999999998854311 139999
Q ss_pred eeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCc
Q 011707 228 LGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDE 304 (479)
Q Consensus 228 ~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~ 304 (479)
+||...+. +......|+.||++.+.+++.++.+ .|+++++++|| +..+....
T Consensus 177 isS~~~~~------------------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG-~~t~~~~~ 231 (322)
T 3qlj_A 177 TSSGAGLQ------------------------GSVGQGNYSAAKAGIATLTLVGAAEMGRYGVTVNAIAPS-ARTRMTET 231 (322)
T ss_dssp ECCHHHHH------------------------CBTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC-TTSCCSCC
T ss_pred EcCHHHcc------------------------CCCCCccHHHHHHHHHHHHHHHHHHhcccCcEEEEecCC-CCCccchh
Confidence 99965442 1223678999999999999999998 48999999999 65443211
Q ss_pred hhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 305 TAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
. +.... ........+++++|+|++++.++..... .|+ +|++.++.
T Consensus 232 ~---------------~~~~~----------------~~~~~~~~~~~pedva~~v~~L~s~~~~~itG~--~i~vdGG~ 278 (322)
T 3qlj_A 232 V---------------FAEMM----------------ATQDQDFDAMAPENVSPLVVWLGSAEARDVTGK--VFEVEGGK 278 (322)
T ss_dssp S---------------CCC------------------------CCTTCGGGTHHHHHHHTSGGGGGCCSC--EEEEETTE
T ss_pred h---------------hhhhh----------------hccccccCCCCHHHHHHHHHHHhCccccCCCCC--EEEECCCc
Confidence 0 00000 0112234567899999999999865443 455 88887742
Q ss_pred ------------------cCHHHHHHHHHHH
Q 011707 383 ------------------FSVNQLAALVTKA 395 (479)
Q Consensus 383 ------------------~s~~el~~~i~~~ 395 (479)
+++.|+++.+.+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~ 309 (322)
T 3qlj_A 279 IRVAEGWAHGPQIDKGARWDPAELGPVVADL 309 (322)
T ss_dssp EEEEECCEEEEEEECSSCCCGGGHHHHHHHH
T ss_pred cccCCCcccccccCccCCCCHHHHHHHHHHH
Confidence 3779999999998
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.5e-23 Score=195.97 Aligned_cols=228 Identities=15% Similarity=0.135 Sum_probs=164.5
Q ss_pred CCCcEEEEEcCC--chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGD--GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|+||||||+ |+||.+++++|+++|++|++++|... . .+..+.+.... .++.++.+|+
T Consensus 4 l~~k~vlVTGas~~~gIG~~~a~~l~~~G~~V~~~~r~~~-~----------------~~~~~~l~~~~-~~~~~~~~D~ 65 (275)
T 2pd4_A 4 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-L----------------EKRVRPIAQEL-NSPYVYELDV 65 (275)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-T----------------HHHHHHHHHHT-TCCCEEECCT
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEeCCHH-H----------------HHHHHHHHHhc-CCcEEEEcCC
Confidence 468999999999 99999999999999999999988542 0 01112221111 2478899999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeec
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS 230 (479)
+|+++++++++.. ++|+||||||.... +....+.+++..++++|+.|+.++++++...- .+.+||++||
T Consensus 66 ~~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS 145 (275)
T 2pd4_A 66 SKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLSY 145 (275)
T ss_dssp TCHHHHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCccCccccCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEEec
Confidence 9999998887753 68999999997642 22234556778899999999999999997751 1139999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
...+. +..+...|+.||++.+.+++.++.++ |+++++++||.|.++.....
T Consensus 146 ~~~~~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~-- 199 (275)
T 2pd4_A 146 LGSTK------------------------YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGI-- 199 (275)
T ss_dssp GGGTS------------------------BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGS--
T ss_pred chhcC------------------------CCCCchhhHHHHHHHHHHHHHHHHHhhhcCeEEEEEeeCccccchhhhc--
Confidence 65432 12236789999999999999999886 89999999999998753210
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.....+...+....+ ...+.+++|+|++++.++..... .|+ ++++.++
T Consensus 200 ---------------~~~~~~~~~~~~~~p---------~~~~~~p~dva~~~~~l~s~~~~~~tG~--~~~vdgg 249 (275)
T 2pd4_A 200 ---------------ADFRMILKWNEINAP---------LRKNVSLEEVGNAGMYLLSSLSSGVSGE--VHFVDAG 249 (275)
T ss_dssp ---------------TTHHHHHHHHHHHST---------TSSCCCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ---------------cccHHHHHHHHhcCC---------cCCCCCHHHHHHHHHHHhCccccCCCCC--EEEECCC
Confidence 001122222222111 12467899999999999975433 454 8988875
|
| >4e4y_A Short chain dehydrogenase family protein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; 1.80A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=196.79 Aligned_cols=227 Identities=14% Similarity=0.077 Sum_probs=163.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHh-CCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSN-KGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~-~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++|++|||||+|+||.+++++|++ .|+.|+++++.... ....+.++.+|++|
T Consensus 3 ~~k~vlITGas~gIG~~~a~~l~~~~g~~v~~~~~~~~~---------------------------~~~~~~~~~~Dv~~ 55 (244)
T 4e4y_A 3 AMANYLVTGGSKGIGKAVVELLLQNKNHTVINIDIQQSF---------------------------SAENLKFIKADLTK 55 (244)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHTTSTTEEEEEEESSCCC---------------------------CCTTEEEEECCTTC
T ss_pred CCCeEEEeCCCChHHHHHHHHHHhcCCcEEEEecccccc---------------------------ccccceEEecCcCC
Confidence 578999999999999999999999 78999988875331 11467889999999
Q ss_pred hHHHHHHhhhc---CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcCC-cceEEEeeccccccCCC
Q 011707 164 FEFLSESFKSF---EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ-ECHLVKLGTMGEYGTPN 238 (479)
Q Consensus 164 ~~~~~~~~~~~---~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~-~~~~V~~SS~~v~g~~~ 238 (479)
.++++++++.. ++|+||||||...... ...+++++..++++|+.|+.++++++...-. ..+||++||...+.
T Consensus 56 ~~~v~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~--- 132 (244)
T 4e4y_A 56 QQDITNVLDIIKNVSFDGIFLNAGILIKGSIFDIDIESIKKVLDLNVWSSIYFIKGLENNLKVGASIVFNGSDQCFI--- 132 (244)
T ss_dssp HHHHHHHHHHTTTCCEEEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHTGGGEEEEEEEEEECCGGGTC---
T ss_pred HHHHHHHHHHHHhCCCCEEEECCccCCCCCcccCCHHHHHHHHHHccHHHHHHHHHHHHHhccCcEEEEECCHHHcc---
Confidence 99999888643 6899999999865422 2345667888999999999999999876421 13899999976552
Q ss_pred CCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhhhccc
Q 011707 239 IDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEELCNRL 315 (479)
Q Consensus 239 ~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~ 315 (479)
+......|+.||++.+.+++.++.+ +|+++++++||.|..+...... ......
T Consensus 133 ---------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~--~~~~~~- 188 (244)
T 4e4y_A 133 ---------------------AKPNSFAYTLSKGAIAQMTKSLALDLAKYQIRVNTVCPGTVDTDLYRNLI--QKYANN- 188 (244)
T ss_dssp ---------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEESCBCCHHHHHHH--HHHHHH-
T ss_pred ---------------------CCCCCchhHHHHHHHHHHHHHHHHHHHHcCeEEEEEecCccCchhhHHHH--Hhhhhh-
Confidence 2234679999999999999999986 4899999999999876321100 000000
Q ss_pred CCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 316 DYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 316 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.............. ......+.+++|+|++++.++..+.. .|+ ++++.++
T Consensus 189 -----~~~~~~~~~~~~~~---------~~p~~r~~~p~dvA~~v~~l~s~~~~~itG~--~i~vdGG 240 (244)
T 4e4y_A 189 -----VGISFDEAQKQEEK---------EFPLNRIAQPQEIAELVIFLLSDKSKFMTGG--LIPIDGG 240 (244)
T ss_dssp -----HTCCHHHHHHHHHT---------TSTTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -----cCCCHHHHHHHHhh---------cCCCCCCcCHHHHHHHHHHHhcCccccccCC--eEeECCC
Confidence 00000001122211 12334678999999999999976544 355 9999875
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=199.88 Aligned_cols=242 Identities=15% Similarity=0.050 Sum_probs=169.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|+++++..... ..+..+.+.. .+.++.++.+|++
T Consensus 15 ~l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~Dv~ 78 (270)
T 3is3_A 15 RLDGKVALVTGSGRGIGAAVAVHLGRLGAKVVVNYANSTKD---------------AEKVVSEIKA-LGSDAIAIKADIR 78 (270)
T ss_dssp CCTTCEEEESCTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---------------HHHHHHHHHH-TTCCEEEEECCTT
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCCHHH---------------HHHHHHHHHh-cCCcEEEEEcCCC
Confidence 46789999999999999999999999999999987754321 1111112211 2467899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeecccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYG 235 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g 235 (479)
|.++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++...- ...+||++||.....
T Consensus 79 ~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~~~~~ 158 (270)
T 3is3_A 79 QVPEIVKLFDQAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSNTSKD 158 (270)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCTTTTT
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCchhcc
Confidence 999998888754 7999999999865433 233666788999999999999999997653 123899999964211
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
.+..+...|+.||++.+.+++.++.++ |+++++++||.|..+..... .
T Consensus 159 -----------------------~~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~~------~ 209 (270)
T 3is3_A 159 -----------------------FSVPKHSLYSGSKGAVDSFVRIFSKDCGDKKITVNAVAPGGTVTDMFHEV------S 209 (270)
T ss_dssp -----------------------CCCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSTTHHHH------G
T ss_pred -----------------------CCCCCCchhHHHHHHHHHHHHHHHHHhcccCeEEEEEEeCCccChhhhhh------h
Confidence 122346889999999999999999884 89999999999988753210 0
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
......+. .............. .....+.+++|+|++++.++..... .|+ ++++.++
T Consensus 210 ~~~~~~~~-~~~~~~~~~~~~~~---------~p~~r~~~p~dvA~~v~~L~s~~~~~itG~--~i~vdGG 268 (270)
T 3is3_A 210 HHYIPNGT-SYTAEQRQQMAAHA---------SPLHRNGWPQDVANVVGFLVSKEGEWVNGK--VLTLDGG 268 (270)
T ss_dssp GGGSTTGG-GSCHHHHHHHHHHH---------STTCSCBCHHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred hhcccccc-ccchHHHHHHHHhc---------CCCCCCCCHHHHHHHHHHHcCCccCCccCc--EEEeCCC
Confidence 00000000 00011111111111 1234568899999999999875443 355 9998874
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=196.06 Aligned_cols=216 Identities=15% Similarity=0.113 Sum_probs=156.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||++++++|+++|++|++++|.... ...+.++.+|++
T Consensus 18 ~l~~k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~----------------------------~~~~~~~~~Dl~ 69 (253)
T 2nm0_A 18 SHMSRSVLVTGGNRGIGLAIARAFADAGDKVAITYRSGEP----------------------------PEGFLAVKCDIT 69 (253)
T ss_dssp --CCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSCC----------------------------CTTSEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHh----------------------------hccceEEEecCC
Confidence 3568999999999999999999999999999999875321 023778899999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|+||||||...... ...+++++..++++|+.|+.++++++.. .+.+ +||++||..
T Consensus 70 d~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~ 148 (253)
T 2nm0_A 70 DTEQVEQAYKEIEETHGPVEVLIANAGVTKDQLLMRMSEEDFTSVVETNLTGTFRVVKRANRAMLRAKKG-RVVLISSVV 148 (253)
T ss_dssp SHHHHHHHHHHHHHHTCSCSEEEEECSCCTTTC---CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-EEEEECchh
Confidence 999998887643 5899999999764322 2335667888999999999999987754 3555 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.+|++.+.+++.++.++ |+++++++||.|..+....
T Consensus 149 ~~~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~T~~~~~----- 199 (253)
T 2nm0_A 149 GLL------------------------GSAGQANYAASKAGLVGFARSLARELGSRNITFNVVAPGFVDTDMTKV----- 199 (253)
T ss_dssp CCC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEECSBCC----------
T ss_pred hCC------------------------CCCCcHHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEEeCcCcCcchhh-----
Confidence 431 11225789999999999999999885 7999999999987664210
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
............. ....+++.+|+|++++.++..+.. .|+ ++++.++
T Consensus 200 --------------~~~~~~~~~~~~~---------p~~~~~~p~dvA~~i~~l~s~~~~~~tG~--~i~vdGG 248 (253)
T 2nm0_A 200 --------------LTDEQRANIVSQV---------PLGRYARPEEIAATVRFLASDDASYITGA--VIPVDGG 248 (253)
T ss_dssp ------------------CHHHHHTTC---------TTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred --------------cCHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCccccCCcCc--EEEECCc
Confidence 0000111111111 123578999999999999976543 454 8998875
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=195.97 Aligned_cols=229 Identities=14% Similarity=0.111 Sum_probs=165.4
Q ss_pred CCCCcEEEEEcCCch--hhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDGY--CGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG~--iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.+++|+||||||+|+ ||.+++++|+++|++|++++|.... .+.++.+.... .++.++.+|
T Consensus 28 ~l~gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~-----------------~~~~~~~~~~~-~~~~~~~~D 89 (293)
T 3grk_A 28 LLQGKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDAL-----------------KKRVEPLAEEL-GAFVAGHCD 89 (293)
T ss_dssp TTTTCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHH-----------------HHHHHHHHHHH-TCEEEEECC
T ss_pred cCCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHH-----------------HHHHHHHHHhc-CCceEEECC
Confidence 467899999999987 9999999999999999999876321 11111211111 368899999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEee
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLG 229 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~S 229 (479)
++|.++++++++.. ++|+||||||.... +....+.+++..++++|+.|+.++++++...- ...+||++|
T Consensus 90 v~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 90 VADAASIDAVFETLEKKWGKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp TTCHHHHHHHHHHHHHHTSCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 99999998888753 79999999997641 22344566788899999999999999987642 124999999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|...+. +......|+.||++.+.+++.++.++ |+++++++||.|..+......
T Consensus 170 S~~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~ 225 (293)
T 3grk_A 170 YYGAEK------------------------VMPNYNVMGVAKAALEASVKYLAVDLGPQNIRVNAISAGPIKTLAASGIG 225 (293)
T ss_dssp CGGGTS------------------------BCTTTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCC------C
T ss_pred ehhhcc------------------------CCCchHHHHHHHHHHHHHHHHHHHHHhHhCCEEEEEecCCCcchhhhccc
Confidence 966542 22336899999999999999999885 899999999999887532110
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.............+ ...+..++|+|++++.++..... .|+ ++++.++
T Consensus 226 -----------------~~~~~~~~~~~~~p---------~~r~~~pedvA~~v~~L~s~~~~~itG~--~i~vdGG 274 (293)
T 3grk_A 226 -----------------DFRYILKWNEYNAP---------LRRTVTIDEVGDVGLYFLSDLSRSVTGE--VHHADSG 274 (293)
T ss_dssp -----------------CHHHHHHHHHHHST---------TSSCCCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -----------------chHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHcCccccCCcce--EEEECCC
Confidence 01122222222211 23567899999999999976443 455 9999875
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=6e-23 Score=189.60 Aligned_cols=200 Identities=10% Similarity=0.083 Sum_probs=145.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHH-hCCCeEEEEecccc-cccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 86 AKRVMIIGGDGYCGWATALHLS-NKGYEVAIVDSLIR-RLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll-~~G~~V~~~dr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+|+||||||+|+||++++++|+ ++|++|++++|... .. +.+. ....++.++.+|++|
T Consensus 5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~--------------------~~~~-~~~~~~~~~~~D~~d 63 (221)
T 3r6d_A 5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRI--------------------PPEI-IDHERVTVIEGSFQN 63 (221)
T ss_dssp CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHS--------------------CHHH-HTSTTEEEEECCTTC
T ss_pred EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccc--------------------hhhc-cCCCceEEEECCCCC
Confidence 4679999999999999999999 89999999998543 11 1110 023578999999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcC
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEE 243 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e 243 (479)
++++.++++ ++|+||||||.. |+. ++++++++++.+.+ +||++||.++|+.......+
T Consensus 64 ~~~~~~~~~--~~d~vv~~ag~~------------------n~~-~~~~~~~~~~~~~~-~iv~iSs~~~~~~~~~~~~~ 121 (221)
T 3r6d_A 64 PGXLEQAVT--NAEVVFVGAMES------------------GSD-MASIVKALSRXNIR-RVIGVSMAGLSGEFPVALEK 121 (221)
T ss_dssp HHHHHHHHT--TCSEEEESCCCC------------------HHH-HHHHHHHHHHTTCC-EEEEEEETTTTSCSCHHHHH
T ss_pred HHHHHHHHc--CCCEEEEcCCCC------------------Chh-HHHHHHHHHhcCCC-eEEEEeeceecCCCCccccc
Confidence 999999998 899999999841 445 89999999999887 99999999888753321111
Q ss_pred CceeecCCCCCCCCCCCCCCCc-hhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 244 GYITINHNGRTDTLPYPKQASS-FYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~-~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
.. . .... .|+.+|..+|.+++ ..|++++++|||.++++....
T Consensus 122 ~~--------------~-~~~~~~y~~~K~~~e~~~~----~~~i~~~~vrpg~v~~~~~~~------------------ 164 (221)
T 3r6d_A 122 WT--------------F-DNLPISYVQGERQARNVLR----ESNLNYTILRLTWLYNDPEXT------------------ 164 (221)
T ss_dssp HH--------------H-HTSCHHHHHHHHHHHHHHH----HSCSEEEEEEECEEECCTTCC------------------
T ss_pred cc--------------c-cccccHHHHHHHHHHHHHH----hCCCCEEEEechhhcCCCCCc------------------
Confidence 00 0 1123 89999999999775 469999999999999873211
Q ss_pred chHHHHHHHHhcCCCeEEecCCCc-eeccccHHHHHHHHHHHH--hCCCCCCCceEEEeCC
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQ-TRGYLDIRDTVQCVELAI--ANPAQPGEFRVFNQFT 380 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~v~Dva~a~~~~~--~~~~~~g~~~~~ni~~ 380 (479)
.+.....+.. ...+++.+|+|++++.++ .++.... .+.+.+.+
T Consensus 165 --------------~~~~~~~~~~~~~~~~~~~dvA~~~~~l~~~~~~~~~~-~~~~~i~~ 210 (221)
T 3r6d_A 165 --------------DYELIPEGAQFNDAQVSREAVVKAIFDILHAADETPFH-RTSIGVGE 210 (221)
T ss_dssp --------------CCEEECTTSCCCCCEEEHHHHHHHHHHHHTCSCCGGGT-TEEEEEEC
T ss_pred --------------ceeeccCCccCCCceeeHHHHHHHHHHHHHhcChhhhh-cceeeecC
Confidence 0111111111 224799999999999999 7665322 23676664
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.3e-23 Score=194.10 Aligned_cols=216 Identities=16% Similarity=0.120 Sum_probs=153.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++|
T Consensus 2 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~Dv~d 64 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIARELGVAGAKILLGARRQARI----------------EAIATEIRD-AGGTALAQVLDVTD 64 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHH----------------HHHHHHHHH-TTCEEEEEECCTTC
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHh-cCCcEEEEEcCCCC
Confidence 3578999999999999999999999999999999864321 111222221 24578899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
.++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++.. .+.+ +||++||...
T Consensus 65 ~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~IV~isS~~~ 143 (264)
T 3tfo_A 65 RHSVAAFAQAAVDTWGRIDVLVNNAGVMPLSPLAAVKVDEWERMIDVNIKGVLWGIGAVLPIMEAQRSG-QIINIGSIGA 143 (264)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCe-EEEEEcCHHH
Confidence 99998887654 7999999999865432 2336667888999999999999887743 4555 9999999655
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
+. +......|+.||++.+.+++.++.++ |+++++++||.|..+....
T Consensus 144 ~~------------------------~~~~~~~Y~asKaal~~l~~~la~e~~gIrvn~v~PG~v~T~~~~~-------- 191 (264)
T 3tfo_A 144 LS------------------------VVPTAAVYCATKFAVRAISDGLRQESTNIRVTCVNPGVVESELAGT-------- 191 (264)
T ss_dssp TC------------------------CCTTCHHHHHHHHHHHHHHHHHHHHCSSEEEEEEEECCC---------------
T ss_pred cc------------------------cCCCChhHHHHHHHHHHHHHHHHHhCCCCEEEEEecCCCcCccccc--------
Confidence 42 22336789999999999999999886 8999999999997764211
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP 370 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~ 370 (479)
+. ......... .....++..+|+|++++.++..+...
T Consensus 192 ---------------~~----~~~~~~~~~--~~~~~~~~pedvA~~v~~l~s~~~~~ 228 (264)
T 3tfo_A 192 ---------------IT----HEETMAAMD--TYRAIALQPADIARAVRQVIEAPQSV 228 (264)
T ss_dssp -------------------------------------CCCHHHHHHHHHHHHHSCTTE
T ss_pred ---------------cc----chhHHHHHH--hhhccCCCHHHHHHHHHHHhcCCccC
Confidence 00 000000000 01112478999999999999987653
|
| >2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-23 Score=191.91 Aligned_cols=219 Identities=14% Similarity=0.068 Sum_probs=159.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|++|||||+|+||++++++|+++|++|++++|.... ..+.+ ++.++.+|++| +
T Consensus 2 ~k~vlVTGas~giG~~~a~~l~~~G~~V~~~~r~~~~-------------------~~~~~------~~~~~~~D~~~-~ 55 (239)
T 2ekp_A 2 ERKALVTGGSRGIGRAIAEALVARGYRVAIASRNPEE-------------------AAQSL------GAVPLPTDLEK-D 55 (239)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCHH-------------------HHHHH------TCEEEECCTTT-S
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHH-------------------HHHhh------CcEEEecCCch-H
Confidence 5899999999999999999999999999999885431 01111 27788999999 7
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccccc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~g 235 (479)
+++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++. +.+.+ +||++||...+.
T Consensus 56 ~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~ 134 (239)
T 2ekp_A 56 DPKGLVKRALEALGGLHVLVHAAAVNVRKPALELSYEEWRRVLYLHLDVAFLLAQAAAPHMAEAGWG-RVLFIGSVTTFT 134 (239)
T ss_dssp CHHHHHHHHHHHHTSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTS
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECchhhcc
Confidence 777665432 6999999999754322 233556778899999999999998884 34555 999999976654
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
.. +..+...|+.||++.+.+++.++.++ |++++++|||.|.++......
T Consensus 135 ~~----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~~~~------ 186 (239)
T 2ekp_A 135 AG----------------------GPVPIPAYTTAKTALLGLTRALAKEWARLGIRVNLLCPGYVETEFTLPLR------ 186 (239)
T ss_dssp CC----------------------TTSCCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHHH------
T ss_pred CC----------------------CCCCCccHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCCccCchhhccc------
Confidence 21 11346899999999999999999885 899999999999887421100
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. ...+...+.... ....+.+++|+|++++.++..+.. .|+ ++++.++
T Consensus 187 ---------~--~~~~~~~~~~~~---------p~~~~~~~~dvA~~~~~l~s~~~~~~tG~--~~~vdgG 235 (239)
T 2ekp_A 187 ---------Q--NPELYEPITARI---------PMGRWARPEEIARVAAVLCGDEAEYLTGQ--AVAVDGG 235 (239)
T ss_dssp ---------T--CHHHHHHHHTTC---------TTSSCBCHHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred ---------c--CHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHcCchhcCCCCC--EEEECCC
Confidence 0 011222222211 123578999999999999875433 455 8998875
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.1e-23 Score=190.47 Aligned_cols=200 Identities=19% Similarity=0.136 Sum_probs=144.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+|+||||||+|+||++++++|+++|++|++++|..... .+..+. . .++.++.+|++|.
T Consensus 4 ~~k~vlVtGasggiG~~~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~---~--~~~~~~~~D~~~~ 62 (234)
T 2ehd_A 4 MKGAVLITGASRGIGEATARLLHAKGYRVGLMARDEKRL----------------QALAAE---L--EGALPLPGDVREE 62 (234)
T ss_dssp CCCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHH---S--TTCEEEECCTTCH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHH---h--hhceEEEecCCCH
Confidence 467999999999999999999999999999998854311 011111 1 2688899999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccccc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEY 234 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~ 234 (479)
++++++++.. ++|+||||||...... ...+.+++...+++|+.|+.++++.+ ++.+.+ +||++||...+
T Consensus 63 ~~~~~~~~~~~~~~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~~-~iv~isS~~~~ 141 (234)
T 2ehd_A 63 GDWARAVAAMEEAFGELSALVNNAGVGVMKPVHELTLEEWRLVLDTNLTGAFLGIRHAVPALLRRGGG-TIVNVGSLAGK 141 (234)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCE-EEEEECCTTTT
T ss_pred HHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCc-EEEEECCchhc
Confidence 9988887643 7999999999754322 22355567888999999998776655 445555 99999997655
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
. +..+...|+.+|++.+.+++.++.+ .|++++++|||.+..+...
T Consensus 142 ~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~Pg~v~t~~~~-------- 189 (234)
T 2ehd_A 142 N------------------------PFKGGAAYNASKFGLLGLAGAAMLDLREANVRVVNVLPGSVDTGFAG-------- 189 (234)
T ss_dssp S------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEECC----------------
T ss_pred C------------------------CCCCCchhhHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcCCccc--------
Confidence 3 2234689999999999999998887 4899999999998765311
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
. . ... ..+++.+|+|++++.++..+..
T Consensus 190 ---------------~----~--~~~----------~~~~~~~dvA~~~~~l~~~~~~ 216 (234)
T 2ehd_A 190 ---------------N----T--PGQ----------AWKLKPEDVAQAVLFALEMPGH 216 (234)
T ss_dssp ---------------------------------------CCHHHHHHHHHHHHHSCCS
T ss_pred ---------------c----c--ccc----------cCCCCHHHHHHHHHHHhCCCcc
Confidence 0 0 000 0157999999999999987644
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-23 Score=200.86 Aligned_cols=248 Identities=13% Similarity=0.072 Sum_probs=171.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCC---ceeEEEcc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGK---NIELYIGD 160 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~v~~D 160 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+... +. ++.++.+|
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~----------------~~~~~~l~~~-~~~~~~~~~~~~D 86 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRL----------------EETKQQILKA-GVPAEKINAVVAD 86 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHT-TCCGGGEEEEECC
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHhc-CCCCceEEEEecC
Confidence 5689999999999999999999999999999999864321 1111112111 22 68899999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCcc---cccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEe
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAP---YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKL 228 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~---~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~ 228 (479)
++|+++++++++.. ++|+||||||..... ....+.+++.+++++|+.|+.++++++... + + +||++
T Consensus 87 v~d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~-g-~IV~i 164 (297)
T 1xhl_A 87 VTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTK-G-EIVNV 164 (297)
T ss_dssp TTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-C-EEEEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCcCcCCCCccccCCHHHHHHHHhHhhHHHHHHHHHHHHHHHhcC-C-EEEEE
Confidence 99999988887643 699999999975432 223456678889999999999999888653 3 4 99999
Q ss_pred eccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCch
Q 011707 229 GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 229 SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~ 305 (479)
||...+... ..+...|+.+|++.+.+++.++.+ +|+++++++||.|.++.....
T Consensus 165 sS~~~~~~~-----------------------~~~~~~Y~asKaa~~~l~~~la~el~~~gI~v~~v~PG~v~T~~~~~~ 221 (297)
T 1xhl_A 165 SSIVAGPQA-----------------------HSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAM 221 (297)
T ss_dssp CCGGGSSSC-----------------------CTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHT
T ss_pred cCchhccCC-----------------------CCCcchHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcCcccccc
Confidence 997654311 023678999999999999999876 489999999999988742100
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC---CCCCCceEEEeCCC-
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP---AQPGEFRVFNQFTE- 381 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~---~~~g~~~~~ni~~~- 381 (479)
.. ..........+....... .....+.+++|+|++++.++..+ ...|+ ++++.++
T Consensus 222 ------~~----~~~~~~~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~~l~s~~~~~~itG~--~i~vdGG~ 280 (297)
T 1xhl_A 222 ------GL----PETASDKLYSFIGSRKEC---------IPVGHCGKPEEIANIIVFLADRNLSSYIIGQ--SIVADGGS 280 (297)
T ss_dssp ------TC----CHHHHHHHHHHHHHCTTT---------CTTSSCBCHHHHHHHHHHHHCHHHHTTCCSC--EEEESTTG
T ss_pred ------cc----ccccccchHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCCcccCCccCc--EEEECCCc
Confidence 00 000000001111221111 12235789999999999998654 23455 9999885
Q ss_pred CcCHHHHHHHHHH
Q 011707 382 QFSVNQLAALVTK 394 (479)
Q Consensus 382 ~~s~~el~~~i~~ 394 (479)
...+.+.+..+.+
T Consensus 281 ~~~~~~~~~~~~~ 293 (297)
T 1xhl_A 281 TLVMGMQTHDLMS 293 (297)
T ss_dssp GGCCGGGGSCHHH
T ss_pred cccccccccchhh
Confidence 3555554444443
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-23 Score=199.60 Aligned_cols=231 Identities=13% Similarity=0.103 Sum_probs=166.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~Dv~ 92 (275)
T 4imr_A 30 GLRGRTALVTGSSRGIGAAIAEGLAGAGAHVILHGVKPGST----------------AAVQQRIIA-SGGTAQELAGDLS 92 (275)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSTTTT----------------HHHHHHHHH-TTCCEEEEECCTT
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHH----------------HHHHHHHHh-cCCeEEEEEecCC
Confidence 35789999999999999999999999999999999854321 111112211 2467899999999
Q ss_pred ChHHHHHHhhhc----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 163 DFEFLSESFKSF----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 163 d~~~~~~~~~~~----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
|.++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++. +.+.+ +||++||...
T Consensus 93 ~~~~~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~Iv~isS~~~ 171 (275)
T 4imr_A 93 EAGAGTDLIERAEAIAPVDILVINASAQINATLSALTPNDLAFQLAVNLGSTVDMLQSALPKMVARKWG-RVVSIGSINQ 171 (275)
T ss_dssp STTHHHHHHHHHHHHSCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGG
T ss_pred CHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-EEEEECCHHh
Confidence 998888877643 7999999999754432 334667788899999999999999883 34555 9999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +..+...|+.||++.+.+++.++.++ |+++++++||.|..+......
T Consensus 172 ~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~~~---- 223 (275)
T 4imr_A 172 LR------------------------PKSVVTAYAATKAAQHNLIQSQARDFAGDNVLLNTLAPGLVDTDRNADRR---- 223 (275)
T ss_dssp TS------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHHHHHHH----
T ss_pred CC------------------------CCCCchhhHHHHHHHHHHHHHHHHHhcccCcEEEEEEeccccCccccccc----
Confidence 53 22335779999999999999999986 899999999999776311000
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.............. .....+...+|+|++++.++..... .|+ ++++.++
T Consensus 224 ------------~~~~~~~~~~~~~~--------~p~~r~~~pedvA~~v~fL~s~~a~~itG~--~i~vdGG 274 (275)
T 4imr_A 224 ------------AQDPEGWDEYVRTL--------NWMGRAGRPEEMVGAALFLASEACSFMTGE--TIFLTGG 274 (275)
T ss_dssp ------------HHCHHHHHHHHHHH--------STTCSCBCGGGGHHHHHHHHSGGGTTCCSC--EEEESSC
T ss_pred ------------ccChHHHHHHHhhc--------CccCCCcCHHHHHHHHHHHcCcccCCCCCC--EEEeCCC
Confidence 00001111111111 0122457799999999999976544 455 9998764
|
| >3ctm_A Carbonyl reductase; alcohol dehydrogenase, short-chain dehydrogenases/reductases (SDR), X-RAY crystallography, oxidoreductase; 2.69A {Candida parapsilosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.3e-23 Score=196.99 Aligned_cols=229 Identities=16% Similarity=0.052 Sum_probs=162.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.... .+.++.++.+|++
T Consensus 31 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~Dl~ 93 (279)
T 3ctm_A 31 SLKGKVASVTGSSGGIGWAVAEAYAQAGADVAIWYNSHPAD----------------EKAEHLQKT-YGVHSKAYKCNIS 93 (279)
T ss_dssp CCTTCEEEETTTTSSHHHHHHHHHHHHTCEEEEEESSSCCH----------------HHHHHHHHH-HCSCEEEEECCTT
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcceEEEeecC
Confidence 46789999999999999999999999999999998864311 011111111 1357889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc-cc-c-cccccccchhhhhhHHHH----HHHHHHHHHcCCcceEEEeec
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA-PY-S-MIDRSRAVFTQHNNVIGT----LNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~-~~-~-~~~~~~~~~~~~~Nv~g~----~~ll~~a~~~g~~~~~V~~SS 230 (479)
|.++++++++.. ++|+||||||.... .. . ..+.+++..++++|+.|+ +++++.+++.+.+ +||++||
T Consensus 94 ~~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~~-~iv~isS 172 (279)
T 3ctm_A 94 DPKSVEETISQQEKDFGTIDVFVANAGVTWTQGPEIDVDNYDSWNKIISVDLNGVYYCSHNIGKIFKKNGKG-SLIITSS 172 (279)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECGGGSTTC--CCCSSHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccccCCcccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-eEEEECc
Confidence 999998888742 59999999997643 11 1 234456778899999995 5666666666666 9999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
...+... +..+...|+.+|++.|.+++.++.++ + ++++++||.+.++.....
T Consensus 173 ~~~~~~~----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~-~v~~v~Pg~v~t~~~~~~-- 227 (279)
T 3ctm_A 173 ISGKIVN----------------------IPQLQAPYNTAKAACTHLAKSLAIEWAPFA-RVNTISPGYIDTDITDFA-- 227 (279)
T ss_dssp CTTSCC-------------------------CCHHHHHHHHHHHHHHHHHHHHHTTTTC-EEEEEEECSBSSTTTSSC--
T ss_pred hHhccCC----------------------CCCCcccHHHHHHHHHHHHHHHHHHhcccC-CEEEEeccCCcccccccc--
Confidence 7544210 12346789999999999999999885 6 999999999988753210
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
. ......+.... ....+++++|+|++++.++..+.. .|+ ++++.++.
T Consensus 228 --------------~---~~~~~~~~~~~---------p~~~~~~~~dvA~~~~~l~s~~~~~~tG~--~i~vdgG~ 276 (279)
T 3ctm_A 228 --------------S---KDMKAKWWQLT---------PLGREGLTQELVGGYLYLASNASTFTTGS--DVVIDGGY 276 (279)
T ss_dssp --------------C---HHHHHHHHHHS---------TTCSCBCGGGTHHHHHHHHSGGGTTCCSC--EEEESTTC
T ss_pred --------------C---hHHHHHHHHhC---------CccCCcCHHHHHHHHHHHhCccccCccCC--EEEECCCe
Confidence 0 11111111111 123578999999999999976432 455 99998753
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=188.99 Aligned_cols=233 Identities=13% Similarity=0.030 Sum_probs=166.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+++||+++++.|+++|++|+++++.... +.+..+.+.. .+.++.++.+|++
T Consensus 4 sL~gKvalVTGas~GIG~aiA~~la~~Ga~Vv~~~~~~~~----------------~~~~~~~i~~-~g~~~~~~~~Dvt 66 (254)
T 4fn4_A 4 SLKNKVVIVTGAGSGIGRAIAKKFALNDSIVVAVELLEDR----------------LNQIVQELRG-MGKEVLGVKADVS 66 (254)
T ss_dssp GGTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHH-TTCCEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH----------------HHHHHHHHHh-cCCcEEEEEccCC
Confidence 4689999999999999999999999999999999986542 1222223322 2467899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
|+++++++++.. ++|++|||||+... +....++++|++++++|+.|++++.+++.. .+.+ +||++||.
T Consensus 67 ~~~~v~~~~~~~~~~~G~iDiLVNNAGi~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G-~IVnisS~ 145 (254)
T 4fn4_A 67 KKKDVEEFVRRTFETYSRIDVLCNNAGIMDGVTPVAEVSDELWERVLAVNLYSAFYSSRAVIPIMLKQGKG-VIVNTASI 145 (254)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCCCTTCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEEech
Confidence 999988887653 79999999997543 234457778999999999999999887743 4555 99999995
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
.-.. +......|+.||++...+.+.++.++ ||+++.|-||.|--|.......
T Consensus 146 ~g~~------------------------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~~- 200 (254)
T 4fn4_A 146 AGIR------------------------GGFAGAPYTVAKHGLIGLTRSIAAHYGDQGIRAVAVLPGTVKTNIGLGSSK- 200 (254)
T ss_dssp GGTC------------------------SSSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSCTTSCSS-
T ss_pred hhcC------------------------CCCCChHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEEeCCCCCcccccccC-
Confidence 4321 12236789999999999999999985 8999999999986653221100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. ...........+ ...-+...+|+|.+++.++......-.++++++.++
T Consensus 201 -------------~~--~~~~~~~~~~~~--------~~~R~g~pediA~~v~fLaSd~a~~iTG~~i~VDGG 250 (254)
T 4fn4_A 201 -------------PS--ELGMRTLTKLMS--------LSSRLAEPEDIANVIVFLASDEASFVNGDAVVVDGG 250 (254)
T ss_dssp -------------CC--HHHHHHHHHHHT--------TCCCCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred -------------Cc--HHHHHHHHhcCC--------CCCCCcCHHHHHHHHHHHhCchhcCCcCCEEEeCCC
Confidence 00 011111111100 112346789999999999876544322338888765
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-23 Score=192.79 Aligned_cols=210 Identities=14% Similarity=0.061 Sum_probs=155.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc--CCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL--TGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~D 160 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+... ...++.++.+|
T Consensus 4 ~~~~k~~lVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~D 67 (250)
T 3nyw_A 4 EKQKGLAIITGASQGIGAVIAAGLATDGYRVVLIARSKQNL----------------EKVHDEIMRSNKHVQEPIVLPLD 67 (250)
T ss_dssp -CCCCEEEEESTTSHHHHHHHHHHHHHTCEEEEEESCHHHH----------------HHHHHHHHHHCTTSCCCEEEECC
T ss_pred cCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHHhccccCcceEEecc
Confidence 35689999999999999999999999999999999865421 1112222111 12578899999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM 231 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~ 231 (479)
++|.++++++++.. ++|+||||||.........+.+++.+++++|+.|+.++++++. +.+.+ +||++||.
T Consensus 68 v~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~ 146 (250)
T 3nyw_A 68 ITDCTKADTEIKDIHQKYGAVDILVNAAAMFMDGSLSEPVDNFRKIMEINVIAQYGILKTVTEIMKVQKNG-YIFNVASR 146 (250)
T ss_dssp TTCHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCSCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECC-
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCe-EEEEEccH
Confidence 99999988887653 6999999999865433344556788899999999999999883 34555 99999995
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +..+...|+.||++.+.+++.++.++ |+++++++||.|..+.
T Consensus 147 ~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~------- 195 (250)
T 3nyw_A 147 AAKY------------------------GFADGGIYGSTKFALLGLAESLYRELAPLGIRVTTLCPGWVNTDM------- 195 (250)
T ss_dssp ------------------------------CCTTHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCSHH-------
T ss_pred HhcC------------------------CCCCCcchHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCcccCch-------
Confidence 4331 11236899999999999999999885 8999999999986541
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
...... ......+++.+|++++++.++..+..
T Consensus 196 --------------------~~~~~~---------~~~~~~~~~p~dva~~v~~l~s~~~~ 227 (250)
T 3nyw_A 196 --------------------AKKAGT---------PFKDEEMIQPDDLLNTIRCLLNLSEN 227 (250)
T ss_dssp --------------------HHHTTC---------CSCGGGSBCHHHHHHHHHHHHTSCTT
T ss_pred --------------------hhhcCC---------CcccccCCCHHHHHHHHHHHHcCCCc
Confidence 111111 11234579999999999999986544
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.5e-23 Score=200.02 Aligned_cols=179 Identities=15% Similarity=0.092 Sum_probs=134.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~ 162 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+... .+.++.++.+|++
T Consensus 6 l~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~~Dl~ 69 (319)
T 3ioy_A 6 FAGRTAFVTGGANGVGIGLVRQLLNQGCKVAIADIRQDSI----------------DKALATLEAEGSGPEVMGVQLDVA 69 (319)
T ss_dssp CTTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHHTCGGGEEEEECCTT
T ss_pred CCCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHhcCCCCeEEEEECCCC
Confidence 5689999999999999999999999999999999865421 1111122111 1127899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcC---------CcceEEE
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFR---------QECHLVK 227 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g---------~~~~~V~ 227 (479)
|.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++.... ...+||+
T Consensus 70 ~~~~v~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~~g~iV~ 149 (319)
T 3ioy_A 70 SREGFKMAADEVEARFGPVSILCNNAGVNLFQPIEESSYDDWDWLLGVNLHGVVNGVTTFVPRMVERVKAGEQKGGHVVN 149 (319)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTSCCCCEEEE
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccCCCCcEEEE
Confidence 999998888753 6899999999765432 333556678899999999999999885432 1238999
Q ss_pred eeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCC
Q 011707 228 LGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRT 302 (479)
Q Consensus 228 ~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~ 302 (479)
+||...+.. ......|+.||++.+.+++.++.++ |+++++++||.|.++..
T Consensus 150 isS~a~~~~------------------------~~~~~~Y~aSKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~ 203 (319)
T 3ioy_A 150 TASMAAFLA------------------------AGSPGIYNTTKFAVRGLSESLHYSLLKYEIGVSVLCPGLVKSYIY 203 (319)
T ss_dssp ECCGGGTCC------------------------CSSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCBC----
T ss_pred ecccccccC------------------------CCCCHHHHHHHHHHHHHHHHHHHHhhhcCCEEEEEEcCeEccCcc
Confidence 999665432 2236789999999999888888764 89999999999988754
|
| >3uce_A Dehydrogenase; rossmann fold, oxidoreductase; HET: NDP; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.8e-23 Score=189.59 Aligned_cols=211 Identities=12% Similarity=0.067 Sum_probs=160.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|.. . +|++|
T Consensus 4 ~~~k~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~--------------------------------~-----~D~~~ 46 (223)
T 3uce_A 4 SDKTVYVVLGGTSGIGAELAKQLESEHTIVHVASRQT--------------------------------G-----LDISD 46 (223)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHCSTTEEEEEESGGG--------------------------------T-----CCTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEecCCc--------------------------------c-----cCCCC
Confidence 4689999999999999999999999999999987631 1 89999
Q ss_pred hHHHHHHhhhc-CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccccCCCC
Q 011707 164 FEFLSESFKSF-EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGTPNI 239 (479)
Q Consensus 164 ~~~~~~~~~~~-~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~~~~ 239 (479)
+++++++++.. ++|+||||||.... +....+.+++...+++|+.|+.++++++...- .+.+||++||...+.
T Consensus 47 ~~~v~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~~sS~~~~~---- 122 (223)
T 3uce_A 47 EKSVYHYFETIGAFDHLIVTAGSYAPAGKVVDVEVTQAKYAFDTKFWGAVLAAKHGARYLKQGGSITLTSGMLSRK---- 122 (223)
T ss_dssp HHHHHHHHHHHCSEEEEEECCCCCCCCSCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEEEEECCGGGTS----
T ss_pred HHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHhhheeeeeeHHHHHHHHHhhccCCeEEEEecchhhcc----
Confidence 99999998865 69999999997632 22334556778899999999999999997642 123899999976553
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhC-CceEEeecCeeecCCCCchhhhHhhhcccCCC
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG-IRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g-l~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~ 318 (479)
+..+...|+.+|++.+.+++.++.+++ +++++++||.|..+......
T Consensus 123 --------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~------------ 170 (223)
T 3uce_A 123 --------------------VVANTYVKAAINAAIEATTKVLAKELAPIRVNAISPGLTKTEAYKGMN------------ 170 (223)
T ss_dssp --------------------CCTTCHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEECSBCSGGGTTSC------------
T ss_pred --------------------CCCCchHHHHHHHHHHHHHHHHHHhhcCcEEEEEEeCCCcchhhhhcc------------
Confidence 223468999999999999999999976 99999999999887432110
Q ss_pred CcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 319 GVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 319 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
......+........ ....+.+++|+|++++.++......|+ ++++.++
T Consensus 171 ---~~~~~~~~~~~~~~~---------~~~~~~~~~dvA~~~~~l~~~~~~tG~--~i~vdgG 219 (223)
T 3uce_A 171 ---ADDRDAMYQRTQSHL---------PVGKVGEASDIAMAYLFAIQNSYMTGT--VIDVDGG 219 (223)
T ss_dssp ---HHHHHHHHHHHHHHS---------TTCSCBCHHHHHHHHHHHHHCTTCCSC--EEEESTT
T ss_pred ---hhhHHHHHHHHhhcC---------CCCCccCHHHHHHHHHHHccCCCCCCc--EEEecCC
Confidence 111122222222222 234678999999999999987655676 9999875
|
| >1sby_A Alcohol dehydrogenase; ternary complex, NAD, trifluoroethanol, oxidoreductase; HET: NAD; 1.10A {Scaptodrosophila lebanonensis} SCOP: c.2.1.2 PDB: 1b14_A* 1b15_A* 1a4u_A* 1b2l_A* 1b16_A* 3rj5_A* 3rj9_A* 1mg5_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-22 Score=190.96 Aligned_cols=220 Identities=15% Similarity=0.124 Sum_probs=156.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCe-EEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYE-VAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl 161 (479)
+++|+||||||+|+||.+++++|+++|++ |++++|.... +..+.+... .+.++.++.+|+
T Consensus 3 l~~k~vlVtGas~gIG~~~a~~l~~~G~~~v~~~~r~~~~------------------~~~~~l~~~~~~~~~~~~~~D~ 64 (254)
T 1sby_A 3 LTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP------------------TALAELKAINPKVNITFHTYDV 64 (254)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH------------------HHHHHHHHHCTTSEEEEEECCT
T ss_pred CCCcEEEEECCCChHHHHHHHHHHHCCCcEEEEEecCchH------------------HHHHHHHHhCCCceEEEEEEec
Confidence 56899999999999999999999999997 8888875421 011111111 134788999999
Q ss_pred CCh-HHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCC------cceEEEee
Q 011707 162 CDF-EFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ------ECHLVKLG 229 (479)
Q Consensus 162 ~d~-~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~------~~~~V~~S 229 (479)
+|+ ++++++++.. ++|+||||||.. +++++..++++|+.|+.++++++..... ..+||++|
T Consensus 65 ~~~~~~~~~~~~~~~~~~g~id~lv~~Ag~~-------~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~g~iv~is 137 (254)
T 1sby_A 65 TVPVAESKKLLKKIFDQLKTVDILINGAGIL-------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANIC 137 (254)
T ss_dssp TSCHHHHHHHHHHHHHHHSCCCEEEECCCCC-------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred CCChHHHHHHHHHHHHhcCCCCEEEECCccC-------CHHHHhhhheeeehhHHHHHHHHHHHHHHhcCCCCCEEEEEC
Confidence 998 8888777643 799999999963 2345677899999999999999865311 23899999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|...+.. ......|+.||++.+.+++.++.+ .|+++++++||.|.++.....
T Consensus 138 S~~~~~~------------------------~~~~~~Y~~sK~a~~~~~~~la~~~~~~gi~v~~v~Pg~v~t~~~~~~- 192 (254)
T 1sby_A 138 SVTGFNA------------------------IHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVHTF- 192 (254)
T ss_dssp CGGGTSC------------------------CTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHHSC-
T ss_pred chhhccC------------------------CCCchHHHHHHHHHHHHHHHHHHHhccCCeEEEEEecCCccCcccccc-
Confidence 9766532 233678999999999999998876 589999999999988732100
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
..... . ...+...... ..+.+++|+|++++.+++. ...|+ +|++.++
T Consensus 193 -----------~~~~~-~-~~~~~~~~~~------------~~~~~~~dvA~~i~~~~~~-~~~G~--~~~v~gG 239 (254)
T 1sby_A 193 -----------NSWLD-V-EPRVAELLLS------------HPTQTSEQCGQNFVKAIEA-NKNGA--IWKLDLG 239 (254)
T ss_dssp -----------CCGGG-S-CTTHHHHHTT------------SCCEEHHHHHHHHHHHHHH-CCTTC--EEEEETT
T ss_pred -----------chhhh-h-hHHHHHHHhc------------CCCCCHHHHHHHHHHHHHc-CCCCC--EEEEeCC
Confidence 00000 0 0001111111 1234899999999999874 33455 8998774
|
| >2x9g_A PTR1, pteridine reductase; short chain dehydrogenase, oxidoreductase; HET: NAP LYA; 1.10A {Trypanosoma brucei brucei} PDB: 2x9n_A* 2x9v_A* 3bmc_A* 3bmd_A* 3bme_A* 3bmf_A* 3bmg_A* 3bmh_A* 3bmi_A* 3bmj_A* 3bmk_A* 3bml_A* 3bmm_A* 3bmn_A* 3bmo_A* 3bmq_A* 3bmr_A* 3gn1_A* 3gn2_A* 3jq6_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-22 Score=194.41 Aligned_cols=226 Identities=15% Similarity=0.068 Sum_probs=162.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc-ccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI-RRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|.. .. +.+..+.+....+.++.++.+|+
T Consensus 20 ~l~~k~~lVTGas~gIG~aia~~L~~~G~~V~~~~r~~~~~----------------~~~~~~~l~~~~~~~~~~~~~Dv 83 (288)
T 2x9g_A 20 HMEAPAAVVTGAAKRIGRAIAVKLHQTGYRVVIHYHNSAEA----------------AVSLADELNKERSNTAVVCQADL 83 (288)
T ss_dssp --CCCEEEETTCSSHHHHHHHHHHHHHTCEEEEEESSCHHH----------------HHHHHHHHHHHSTTCEEEEECCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCeEEEEeCCchHH----------------HHHHHHHHHhhcCCceEEEEeec
Confidence 45789999999999999999999999999999999864 21 11111122111235788999999
Q ss_pred CC----hHHHHHHhhhc-----CCCEEEEcccccCcccc------c-----ccccccchhhhhhHHHHHHHHHHHHHc--
Q 011707 162 CD----FEFLSESFKSF-----EPDAVVHFGEQRSAPYS------M-----IDRSRAVFTQHNNVIGTLNVLFAMKEF-- 219 (479)
Q Consensus 162 ~d----~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~------~-----~~~~~~~~~~~~Nv~g~~~ll~~a~~~-- 219 (479)
+| .++++++++.. ++|+||||||....... . .+.+++..++++|+.|+.++++++...
T Consensus 84 ~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~ 163 (288)
T 2x9g_A 84 TNSNVLPASCEEIINSCFRAFGRCDVLVNNASAFYPTPLVQGDHEDNSNGKTVETQVAELIGTNAIAPFLLTMSFAQRQK 163 (288)
T ss_dssp SCSTTHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCCC--------CCHHHHHHHHHHHHTHHHHHHHHHHHHHC-
T ss_pred CCccCCHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCccccccchhcccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 99 88888877643 79999999997543221 2 344567788999999999999988653
Q ss_pred --C------CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCc
Q 011707 220 --R------QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIR 288 (479)
Q Consensus 220 --g------~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~ 288 (479)
+ .+ +||++||...+. +..+...|+.||++.+.+++.++.++ |++
T Consensus 164 ~~~~~~~~~~g-~iv~isS~~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~ 218 (288)
T 2x9g_A 164 GTNPNCTSSNL-SIVNLCDAMVDQ------------------------PCMAFSLYNMGKHALVGLTQSAALELAPYGIR 218 (288)
T ss_dssp -------CCCE-EEEEECCTTTTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEE
T ss_pred hcCCCCCCCCe-EEEEEecccccC------------------------CCCCCchHHHHHHHHHHHHHHHHHHhhccCeE
Confidence 2 33 999999976542 22346889999999999999999885 899
Q ss_pred eEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceecc-ccHHHHHHHHHHHHhCC
Q 011707 289 ATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGY-LDIRDTVQCVELAIANP 367 (479)
Q Consensus 289 ~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~Dva~a~~~~~~~~ 367 (479)
+++++||.|+++. ... ......+....+ ...+ ...+|+|++++.++...
T Consensus 219 vn~v~PG~v~t~~-~~~--------------------~~~~~~~~~~~p---------~~r~~~~pedvA~~v~~l~s~~ 268 (288)
T 2x9g_A 219 VNGVAPGVSLLPV-AMG--------------------EEEKDKWRRKVP---------LGRREASAEQIADAVIFLVSGS 268 (288)
T ss_dssp EEEEEESSCSCCT-TSC--------------------HHHHHHHHHTCT---------TTSSCCCHHHHHHHHHHHHSGG
T ss_pred EEEEEeccccCcc-ccC--------------------hHHHHHHHhhCC---------CCCCCCCHHHHHHHHHHHhCcc
Confidence 9999999999885 210 011122222211 1234 78999999999999754
Q ss_pred CC--CCCceEEEeCCC
Q 011707 368 AQ--PGEFRVFNQFTE 381 (479)
Q Consensus 368 ~~--~g~~~~~ni~~~ 381 (479)
.. .|+ ++++.++
T Consensus 269 ~~~itG~--~i~vdGG 282 (288)
T 2x9g_A 269 AQYITGS--IIKVDGG 282 (288)
T ss_dssp GTTCCSC--EEEESTT
T ss_pred ccCccCC--EEEECcc
Confidence 33 454 8888875
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.3e-23 Score=196.54 Aligned_cols=219 Identities=16% Similarity=0.151 Sum_probs=154.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+....+..+.++.+|++
T Consensus 30 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~Dv~ 93 (281)
T 4dry_A 30 SGEGRIALVTGGGTGVGRGIAQALSAEGYSVVITGRRPDVL----------------DAAAGEIGGRTGNIVRAVVCDVG 93 (281)
T ss_dssp ----CEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHHHSSCEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHhcCCCeEEEEEcCCC
Confidence 45789999999999999999999999999999999865421 11122222222234689999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHHc----C-CcceEEEeec
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----R-QECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g-~~~~~V~~SS 230 (479)
|.++++++++.. ++|+||||||.... +....+.+++.+++++|+.|+.++++++... + ...+||++||
T Consensus 94 d~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~~~~g~IV~isS 173 (281)
T 4dry_A 94 DPDQVAALFAAVRAEFARLDLLVNNAGSNVPPVPLEEVTFEQWNGIVAANLTGAFLCTQHAFRMMKAQTPRGGRIINNGS 173 (281)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSSCCEEEEEECC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCcEEEEECC
Confidence 999998888754 79999999997543 2333466678889999999999988877542 2 1239999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
...+. +..+...|+.||++.+.+++.++.+ +|+++++++||.|..+....
T Consensus 174 ~~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~--- 226 (281)
T 4dry_A 174 ISAQT------------------------PRPNSAPYTATKHAITGLTKSTALDGRMHDIACGQIDIGNAATDMTAR--- 226 (281)
T ss_dssp GGGTC------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEECBCC--------
T ss_pred HHhCC------------------------CCCCChhHHHHHHHHHHHHHHHHHHhcccCeEEEEEEECcCcChhhhh---
Confidence 65432 2234789999999999999999988 48999999999997763210
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQP 370 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~ 370 (479)
.... ..-.........++.++|+|++++.++..+...
T Consensus 227 ------------------------~~~~--~~~~~~~~~~~~~~~pedvA~~v~fL~s~~~~~ 263 (281)
T 4dry_A 227 ------------------------MSTG--VLQANGEVAAEPTIPIEHIAEAVVYMASLPLSA 263 (281)
T ss_dssp --------------------------CE--EECTTSCEEECCCBCHHHHHHHHHHHHHSCTTE
T ss_pred ------------------------hcch--hhhhhhcccccCCCCHHHHHHHHHHHhCCCccC
Confidence 1000 000000112234789999999999999987653
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=191.29 Aligned_cols=209 Identities=15% Similarity=0.129 Sum_probs=153.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 26 ~l~~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~ 88 (262)
T 3rkr_A 26 SLSGQVAVVTGASRGIGAAIARKLGSLGARVVLTARDVEKL----------------RAVEREIVA-AGGEAESHACDLS 88 (262)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHH-TTCEEEEEECCTT
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHH-hCCceeEEEecCC
Confidence 35789999999999999999999999999999998864321 111112211 2457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
|.+++.++++.. ++|+||||||.... .....+++++..++++|+.|+.++++++.. .+.+ +||++||.
T Consensus 89 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~~g-~iv~isS~ 167 (262)
T 3rkr_A 89 HSDAIAAFATGVLAAHGRCDVLVNNAGVGWFGGPLHTMKPAEWDALIAVNLKAPYLLLRAFAPAMIAAKRG-HIINISSL 167 (262)
T ss_dssp CHHHHHHHHHHHHHHHSCCSEEEECCCCCCCSSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCC-EEEEECSS
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCCc-eEEEEech
Confidence 999998887753 69999999997322 223345667788999999999999998744 4455 99999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +..+...|+.+|++.+.+++.++.+ .|+++++++||.|..+....
T Consensus 168 ~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gi~v~~v~PG~v~t~~~~~---- 219 (262)
T 3rkr_A 168 AGKN------------------------PVADGAAYTASKWGLNGLMTSAAEELRQHQVRVSLVAPGSVRTEFGVG---- 219 (262)
T ss_dssp CSSC------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC-----------
T ss_pred hhcC------------------------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCCCcCCcccc----
Confidence 5442 2234689999999999999999987 48999999999987653210
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
+ . .......++..+|+|++++.++..+..
T Consensus 220 -------------------~----~---------~~~~~~~~~~p~dvA~~v~~l~s~~~~ 248 (262)
T 3rkr_A 220 -------------------L----S---------AKKSALGAIEPDDIADVVALLATQADQ 248 (262)
T ss_dssp -----------------------------------------CCCHHHHHHHHHHHHTCCTT
T ss_pred -------------------c----c---------cccccccCCCHHHHHHHHHHHhcCccc
Confidence 0 0 001223568999999999999987554
|
| >3rku_A Oxidoreductase YMR226C; substrate fingerprint, short chain oxidoreductase, rossmann oxidoreductase; HET: NAP; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.1e-22 Score=195.36 Aligned_cols=229 Identities=16% Similarity=0.094 Sum_probs=163.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC---eEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY---EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIG 159 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~---~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~ 159 (479)
+++|+||||||+|+||.+++++|+++|+ +|++++|..... .+..+.+... .+.++.++.+
T Consensus 31 l~~k~~lVTGas~GIG~aia~~l~~~G~~~~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~~ 94 (287)
T 3rku_A 31 LAKKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKL----------------EELKKTIDQEFPNAKVHVAQL 94 (287)
T ss_dssp HTTCEEEEESTTSHHHHHHHHHHHHHHTTCSEEEEEESCHHHH----------------HHHHHHHHHHCTTCEEEEEEC
T ss_pred cCCCEEEEecCCChHHHHHHHHHHHcCCCCceEEEEECCHHHH----------------HHHHHHHHhhCCCCeEEEEEC
Confidence 4689999999999999999999999998 999998864321 1112222211 2457899999
Q ss_pred ccCChHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEe
Q 011707 160 DICDFEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKL 228 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~ 228 (479)
|++|+++++++++.. ++|+||||||.... +....+.+++.+++++|+.|+.++++++ ++.+.+ +||++
T Consensus 95 Dv~d~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~IV~i 173 (287)
T 3rku_A 95 DITQAEKIKPFIENLPQEFKDIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSG-DIVNL 173 (287)
T ss_dssp CTTCGGGHHHHHHTSCGGGCSCCEEEECCCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCEEEECCCcCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-eEEEE
Confidence 999999999998754 69999999997542 2223356678889999999999999988 344555 99999
Q ss_pred eccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCch
Q 011707 229 GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 229 SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~ 305 (479)
||...+. +......|+.||++.+.+++.++.++ |+++++++||.|..+.....
T Consensus 174 sS~~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~gIrvn~v~PG~v~T~~~~~~ 229 (287)
T 3rku_A 174 GSIAGRD------------------------AYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLVETEFSLVR 229 (287)
T ss_dssp CCGGGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEESCEESSHHHHH
T ss_pred CChhhcC------------------------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCCEEEEEeCCcCcCcccccc
Confidence 9965442 22346899999999999999999984 89999999999987631000
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
. ...... ........ ..+.++|+|++++.++..+...-..+++++.++
T Consensus 230 ~---------------~~~~~~-~~~~~~~~------------~p~~pedvA~~v~~l~s~~~~~i~g~~i~v~~g 277 (287)
T 3rku_A 230 Y---------------RGNEEQ-AKNVYKDT------------TPLMADDVADLIVYATSRKQNTVIADTLIFPTN 277 (287)
T ss_dssp T---------------TTCHHH-HHHHHTTS------------CCEEHHHHHHHHHHHHTSCTTEEEEEEEEEETT
T ss_pred c---------------cCcHHH-HHHhhccc------------CCCCHHHHHHHHHHHhCCCCCeEecceEEeeCC
Confidence 0 000011 11111111 124899999999999987655322237777664
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-23 Score=195.05 Aligned_cols=232 Identities=12% Similarity=0.069 Sum_probs=162.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+. + .++.++.+|++|
T Consensus 7 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~---~--~~~~~~~~Dv~d 65 (270)
T 1yde_A 7 YAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESGG----------------RALEQE---L--PGAVFILCDVTQ 65 (270)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHH---C--TTEEEEECCTTS
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHH---h--cCCeEEEcCCCC
Confidence 5689999999999999999999999999999998854311 011111 1 247889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeeccc-
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTMG- 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~~- 232 (479)
+++++++++.. ++|+||||||.... .....+.+++..++++|+.|+.++++++... +.+ +||++||..
T Consensus 66 ~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~g-~iv~isS~~~ 144 (270)
T 1yde_A 66 EDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQG-NVINISSLVG 144 (270)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEECCHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCC-EEEEEcCccc
Confidence 99998887753 79999999997542 2223355667889999999999999988542 234 999999954
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.++.+ ....|+.+|++.+.+++.++.+ +|+++++++||.|+++....
T Consensus 145 ~~~~~-------------------------~~~~Y~asKaa~~~~~~~la~e~~~~gi~vn~v~Pg~v~t~~~~~----- 194 (270)
T 1yde_A 145 AIGQA-------------------------QAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEE----- 194 (270)
T ss_dssp HHCCT-------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHHHH-----
T ss_pred cCCCC-------------------------CCcccHHHHHHHHHHHHHHHHHhhhhCcEEEEEEeCccccchhhh-----
Confidence 34322 2578999999999999999887 48999999999999873110
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC-CCCCCceEEEeCCC-CcCHH
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP-AQPGEFRVFNQFTE-QFSVN 386 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~-~~~g~~~~~ni~~~-~~s~~ 386 (479)
.... . ... ...+....... ....+...+|+|++++.++... ...|+ ++++.++ .+...
T Consensus 195 -~~~~---~---~~~-~~~~~~~~~~~---------p~~r~~~p~dva~~v~~L~s~~~~itG~--~i~vdGG~~~~~~ 254 (270)
T 1yde_A 195 -LAAL---M---PDP-RASIREGMLAQ---------PLGRMGQPAEVGAAAVFLASEANFCTGI--ELLVTGGAELGYG 254 (270)
T ss_dssp -HHTT---S---SSH-HHHHHHHHHTS---------TTSSCBCHHHHHHHHHHHHHHCTTCCSC--EEEESTTTTSCC-
T ss_pred -hhhc---c---cch-HHHHHHHhhcC---------CCCCCcCHHHHHHHHHHHcccCCCcCCC--EEEECCCeecccC
Confidence 0000 0 000 00111111111 1224678999999999888752 22455 8999885 34433
|
| >3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=99.90 E-value=8.6e-23 Score=192.42 Aligned_cols=206 Identities=12% Similarity=0.031 Sum_probs=157.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
..+|+||||||+|+||.+++++|+++|++|++++|.... .....+.+|++|
T Consensus 20 ~m~k~vlITGas~gIG~~la~~l~~~G~~V~~~~r~~~~-----------------------------~~~~~~~~d~~d 70 (251)
T 3orf_A 20 HMSKNILVLGGSGALGAEVVKFFKSKSWNTISIDFRENP-----------------------------NADHSFTIKDSG 70 (251)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT-----------------------------TSSEEEECSCSS
T ss_pred ccCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCccc-----------------------------ccccceEEEeCC
Confidence 457899999999999999999999999999999986431 112356889999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc--ccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeecccccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY--SMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYG 235 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~--~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g 235 (479)
.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++...- .+.+||++||...+.
T Consensus 71 ~~~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~~ 150 (251)
T 3orf_A 71 EEEIKSVIEKINSKSIKVDTFVCAAGGWSGGNASSDEFLKSVKGMIDMNLYSAFASAHIGAKLLNQGGLFVLTGASAALN 150 (251)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCccCCCCCcccccCHHHHHHHHHHHhHHHHHHHHHHHHhhccCCEEEEEechhhcc
Confidence 99998888754 6899999999754322 233455678889999999999999997642 123899999976552
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH-----hCCceEEeecCeeecCCCCchhhhHh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA-----WGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+..+...|+.+|++.+.+++.++.+ .|+++++++||.|..+.
T Consensus 151 ------------------------~~~~~~~Y~~sKaa~~~~~~~la~e~~~~~~gi~v~~v~PG~v~t~~--------- 197 (251)
T 3orf_A 151 ------------------------RTSGMIAYGATKAATHHIIKDLASENGGLPAGSTSLGILPVTLDTPT--------- 197 (251)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHTSTTSSSCTTCEEEEEEESCBCCHH---------
T ss_pred ------------------------CCCCCchhHHHHHHHHHHHHHHHHHhcccCCCcEEEEEecCcCcCcc---------
Confidence 2234689999999999999999988 47999999999987652
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhC---CCCCCCceEEEeCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN---PAQPGEFRVFNQFT 380 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~---~~~~g~~~~~ni~~ 380 (479)
....... .....+++++|+|++++.++.. ....|+ ++++.+
T Consensus 198 ------------------~~~~~~~---------~~~~~~~~~~dva~~i~~l~~~~~~~~~tG~--~i~v~~ 241 (251)
T 3orf_A 198 ------------------NRKYMSD---------ANFDDWTPLSEVAEKLFEWSTNSDSRPTNGS--LVKFET 241 (251)
T ss_dssp ------------------HHHHCTT---------SCGGGSBCHHHHHHHHHHHHHCGGGCCCTTC--EEEEEE
T ss_pred ------------------hhhhccc---------ccccccCCHHHHHHHHHHHhcCccccCCcce--EEEEec
Confidence 1111111 2345788999999999999988 333455 888876
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.7e-22 Score=186.18 Aligned_cols=218 Identities=16% Similarity=0.065 Sum_probs=157.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+....+.++.++.+|++|+
T Consensus 1 ~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~D~~~~ 64 (235)
T 3l77_A 1 EMKVAVITGASRGIGEAIARALARDGYALALGARSVDRL----------------EKIAHELMQEQGVEVFYHHLDVSKA 64 (235)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHHHCCCEEEEECCTTCH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHhhcCCeEEEEEeccCCH
Confidence 378999999999999999999999999999998864321 1112222222346889999999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeeccc-cc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTMG-EY 234 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~~-v~ 234 (479)
++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++... +.+ ++|++||.. .+
T Consensus 65 ~~v~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~ii~~sS~~~~~ 143 (235)
T 3l77_A 65 ESVEEFSKKVLERFGDVDVVVANAGLGYFKRLEELSEEEFHEMIEVNLLGVWRTLKAFLDSLKRTGG-LALVTTSDVSAR 143 (235)
T ss_dssp HHHHHHCC-HHHHHSSCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEECCGGGSS
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCccccccCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-cEEEEecchhcc
Confidence 9999888754 7999999999865432 22356678889999999999999988542 233 666666643 33
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
+. .....|+.+|++.+.+++.+..+. |+++++++||.|..+.....
T Consensus 144 ~~-------------------------~~~~~Y~~sKaa~~~~~~~l~~~~~~i~v~~v~PG~v~T~~~~~~-------- 190 (235)
T 3l77_A 144 LI-------------------------PYGGGYVSTKWAARALVRTFQIENPDVRFFELRPGAVDTYFGGSK-------- 190 (235)
T ss_dssp CC-------------------------TTCHHHHHHHHHHHHHHHHHHHHCTTSEEEEEEECSBSSSTTTCC--------
T ss_pred cC-------------------------CCcchHHHHHHHHHHHHHHHhhcCCCeEEEEEeCCcccccccccc--------
Confidence 21 235789999999999999986553 89999999999876642110
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
. .......++.++|+|++++.++..+......++....+
T Consensus 191 ---------------------------~-~~~~~~~~~~p~dva~~v~~l~~~~~~~~~~~~~~~~~ 229 (235)
T 3l77_A 191 ---------------------------P-GKPKEKGYLKPDEIAEAVRCLLKLPKDVRVEELMLRSV 229 (235)
T ss_dssp ---------------------------S-CCCGGGTCBCHHHHHHHHHHHHTSCTTCCCCEEEECCT
T ss_pred ---------------------------C-CcccccCCCCHHHHHHHHHHHHcCCCCCccceEEEeec
Confidence 0 01112267899999999999999876533223444433
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.6e-23 Score=191.71 Aligned_cols=230 Identities=13% Similarity=0.069 Sum_probs=167.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.++||++|||||+++||.++++.|+++|++|++.++.... +..+... ..+.++..+.+|++
T Consensus 6 ~L~GKvalVTGas~GIG~aiA~~la~~Ga~Vvi~~r~~~~------------------~~~~~~~-~~g~~~~~~~~Dv~ 66 (247)
T 4hp8_A 6 SLEGRKALVTGANTGLGQAIAVGLAAAGAEVVCAARRAPD------------------ETLDIIA-KDGGNASALLIDFA 66 (247)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCCH------------------HHHHHHH-HTTCCEEEEECCTT
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHcCCEEEEEeCCcHH------------------HHHHHHH-HhCCcEEEEEccCC
Confidence 4689999999999999999999999999999999875321 1122222 22467899999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccccccCC
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGEYGTP 237 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v~g~~ 237 (479)
|+++++++++..++|++|||||+..... ...++++|++++++|+.|++.+.+++.. .+...+||++||.....
T Consensus 67 d~~~v~~~~~~g~iDiLVNNAGi~~~~~~~~~~~~~w~~~~~vNl~g~f~~~~~~~~~m~~~g~~G~IVnisS~~~~~-- 144 (247)
T 4hp8_A 67 DPLAAKDSFTDAGFDILVNNAGIIRRADSVEFSELDWDEVMDVNLKALFFTTQAFAKELLAKGRSGKVVNIASLLSFQ-- 144 (247)
T ss_dssp STTTTTTSSTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS--
T ss_pred CHHHHHHHHHhCCCCEEEECCCCCCCCCcccccHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCCcEEEEEechhhCC--
Confidence 9999999888768999999999865433 3346778999999999999999987633 34324999999954321
Q ss_pred CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
+......|+.||+....+.+.++.++ ||+++.|-||.|--|..... ..
T Consensus 145 ----------------------g~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVNaV~PG~i~T~~~~~~------~~- 195 (247)
T 4hp8_A 145 ----------------------GGIRVPSYTAAKHGVAGLTKLLANEWAAKGINVNAIAPGYIETNNTEAL------RA- 195 (247)
T ss_dssp ----------------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSGGGHHH------HT-
T ss_pred ----------------------CCCCChHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCcchhhc------cc-
Confidence 11236789999999999999999985 89999999999866532110 00
Q ss_pred cCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
-......+....| ..-+-..+|+|.+++.++......-.++++.+.++
T Consensus 196 ----------~~~~~~~~~~~~P---------lgR~g~peeiA~~v~fLaSd~a~~iTG~~i~VDGG 243 (247)
T 4hp8_A 196 ----------DAARNKAILERIP---------AGRWGHSEDIAGAAVFLSSAAADYVHGAILNVDGG 243 (247)
T ss_dssp ----------SHHHHHHHHTTCT---------TSSCBCTHHHHHHHHHHTSGGGTTCCSCEEEESTT
T ss_pred ----------CHHHHHHHHhCCC---------CCCCcCHHHHHHHHHHHhCchhcCCcCCeEEECcc
Confidence 0112222333322 22456789999999998876544322348888765
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-22 Score=194.68 Aligned_cols=226 Identities=17% Similarity=0.120 Sum_probs=165.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+. .+.++.++.+|++
T Consensus 27 ~l~~k~vlVTGas~GIG~aia~~l~~~G~~Vi~~~r~~~~~----------------~~~~~~----~~~~~~~~~~Dl~ 86 (281)
T 3ppi_A 27 QFEGASAIVSGGAGGLGEATVRRLHADGLGVVIADLAAEKG----------------KALADE----LGNRAEFVSTNVT 86 (281)
T ss_dssp GGTTEEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHH----HCTTEEEEECCTT
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChHHH----------------HHHHHH----hCCceEEEEcCCC
Confidence 45789999999999999999999999999999999864321 111111 1457899999999
Q ss_pred ChHHHHHHhhhc----CCCEEEEc-ccccCccc------ccccccccchhhhhhHHHHHHHHHHHHHc---------CCc
Q 011707 163 DFEFLSESFKSF----EPDAVVHF-GEQRSAPY------SMIDRSRAVFTQHNNVIGTLNVLFAMKEF---------RQE 222 (479)
Q Consensus 163 d~~~~~~~~~~~----~~D~Vih~-A~~~~~~~------~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---------g~~ 222 (479)
|.++++++++.. ++|+|||| |+...... ...+.+++..++++|+.|+.++++++... +..
T Consensus 87 ~~~~v~~~~~~~~~~~~id~lv~~aag~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~~~~~ 166 (281)
T 3ppi_A 87 SEDSVLAAIEAANQLGRLRYAVVAHGGFGVAQRIVQRDGSPADMGGFTKTIDLYLNGTYNVARLVAASIAAAEPRENGER 166 (281)
T ss_dssp CHHHHHHHHHHHTTSSEEEEEEECCCCCCCCCCSBCTTSCBCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTSCCCTTSCC
T ss_pred CHHHHHHHHHHHHHhCCCCeEEEccCcccccccccccccccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccccCCC
Confidence 999998888643 68999999 44432221 12344567888999999999999988532 122
Q ss_pred ceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeec
Q 011707 223 CHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYG 299 (479)
Q Consensus 223 ~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~G 299 (479)
.+||++||...+. +......|+.||++.+.+++.++.++ |+++++++||.|..
T Consensus 167 g~iv~isS~~~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T 222 (281)
T 3ppi_A 167 GALVLTASIAGYE------------------------GQIGQTAYAAAKAGVIGLTIAAARDLSSAGIRVNTIAPGTMKT 222 (281)
T ss_dssp EEEEEECCGGGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC
T ss_pred eEEEEEecccccC------------------------CCCCCcccHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCcCCc
Confidence 3899999976552 22346899999999999999999885 89999999999976
Q ss_pred CCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeC
Q 011707 300 VRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQF 379 (479)
Q Consensus 300 p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~ 379 (479)
+.... .............++ ...+.+++|+|++++.++......|+ ++++.
T Consensus 223 ~~~~~-------------------~~~~~~~~~~~~~~~--------~~~~~~pedvA~~v~~l~s~~~~tG~--~i~vd 273 (281)
T 3ppi_A 223 PIMES-------------------VGEEALAKFAANIPF--------PKRLGTPDEFADAAAFLLTNGYINGE--VMRLD 273 (281)
T ss_dssp HHHHT-------------------TCHHHHHHHHHTCCS--------SSSCBCHHHHHHHHHHHHHCSSCCSC--EEEES
T ss_pred hhhhc-------------------ccHHHHHHHHhcCCC--------CCCCCCHHHHHHHHHHHHcCCCcCCc--EEEEC
Confidence 52110 011222233332221 14578999999999999987666676 99998
Q ss_pred CC
Q 011707 380 TE 381 (479)
Q Consensus 380 ~~ 381 (479)
++
T Consensus 274 GG 275 (281)
T 3ppi_A 274 GA 275 (281)
T ss_dssp TT
T ss_pred CC
Confidence 74
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=9e-23 Score=194.68 Aligned_cols=206 Identities=15% Similarity=0.072 Sum_probs=155.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++
T Consensus 28 ~l~~k~vlITGasggIG~~la~~L~~~G~~V~~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~Dl~ 90 (272)
T 1yb1_A 28 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGL----------------EETAAKCKG-LGAKVHTFVVDCS 90 (272)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHH-TTCCEEEEECCTT
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEEcCHHHH----------------HHHHHHHHh-cCCeEEEEEeeCC
Confidence 45789999999999999999999999999999999864321 111112211 1357899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
|.++++++++.. ++|+||||||...... ...+.+++...+++|+.|+.++++++. +.+.+ +||++||..
T Consensus 91 ~~~~v~~~~~~~~~~~g~iD~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~-~iv~isS~~ 169 (272)
T 1yb1_A 91 NREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHG-HIVTVASAA 169 (272)
T ss_dssp CHHHHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCCC
T ss_pred CHHHHHHHHHHHHHHCCCCcEEEECCCcCCCcchhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCC-EEEEEechh
Confidence 999998887643 6999999999765332 223445667889999999888887764 34555 999999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh------CCceEEeecCeeecCCCCchh
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW------GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~------gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
.+.. ..+...|+.+|++.+.+++.++.++ |+++++++||.|.++....
T Consensus 170 ~~~~------------------------~~~~~~Y~~sK~a~~~l~~~la~e~~~~~~~gi~v~~v~Pg~v~t~~~~~-- 223 (272)
T 1yb1_A 170 GHVS------------------------VPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTGFIKN-- 223 (272)
T ss_dssp -CCC------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHCSTTC--
T ss_pred hcCC------------------------CCCchhHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEeCCcccCCcccc--
Confidence 5531 1235789999999999999998875 7999999999998774210
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA 368 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~ 368 (479)
. ......+++++|+|++++.++..+.
T Consensus 224 -----------------------------~-------~~~~~~~~~~~dva~~i~~~~~~~~ 249 (272)
T 1yb1_A 224 -----------------------------P-------STSLGPTLEPEEVVNRLMHGILTEQ 249 (272)
T ss_dssp -----------------------------T-------HHHHCCCCCHHHHHHHHHHHHHTTC
T ss_pred -----------------------------c-------cccccCCCCHHHHHHHHHHHHHcCC
Confidence 0 0012357899999999999998653
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=199.49 Aligned_cols=234 Identities=15% Similarity=0.104 Sum_probs=158.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~ 162 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+... .+.++.++.+|++
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~~D~~ 68 (267)
T 2gdz_A 5 VNGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEAG----------------VQCKAALHEQFEPQKTLFIQCDVA 68 (267)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHTTTSCGGGEEEEECCTT
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHhhcCCCceEEEecCCC
Confidence 4678999999999999999999999999999999864321 1111111111 1246889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHH----HHcC---CcceEEEeec
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFR---QECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g---~~~~~V~~SS 230 (479)
|+++++++++.. ++|+||||||... ++++...+++|+.|+.++.+++ ++.+ .+ +||++||
T Consensus 69 ~~~~v~~~~~~~~~~~g~id~lv~~Ag~~~-------~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g-~iv~isS 140 (267)
T 2gdz_A 69 DQQQLRDTFRKVVDHFGRLDILVNNAGVNN-------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGG-IIINMSS 140 (267)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCCC-------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCE-EEEEECC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCC-------hhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCC-EEEEeCC
Confidence 999998888753 6899999999642 3446778999999877666554 3332 34 9999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHH--HH---hCCceEEeecCeeecCCCCch
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTC--KA---WGIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~--~~---~gl~~~ivRp~~v~Gp~~~~~ 305 (479)
...+.. ..+...|+.||++.+.+++.++ .+ .|+++++++||.|.++....
T Consensus 141 ~~~~~~------------------------~~~~~~Y~~sK~a~~~~~~~~ala~e~~~~gi~v~~v~Pg~v~t~~~~~- 195 (267)
T 2gdz_A 141 LAGLMP------------------------VAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILES- 195 (267)
T ss_dssp GGGTSC------------------------CTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHHG-
T ss_pred ccccCC------------------------CCCCchHHHHHHHHHHHHHHHHHHHHhccCCcEEEEEecCcCcchhhhc-
Confidence 766532 1235789999999999998753 33 48999999999997763110
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFS 384 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s 384 (479)
+.... ..+.+.. +...+.. + .....+++++|+|++++.++..+...|+ ++++.+ +.++
T Consensus 196 -----~~~~~-~~~~~~~----~~~~~~~--~-------~~~~~~~~~~dvA~~v~~l~s~~~~~G~--~~~v~gg~~~~ 254 (267)
T 2gdz_A 196 -----IEKEE-NMGQYIE----YKDHIKD--M-------IKYYGILDPPLIANGLITLIEDDALNGA--IMKITTSKGIH 254 (267)
T ss_dssp -----GGCHH-HHGGGGG----GHHHHHH--H-------HHHHCCBCHHHHHHHHHHHHHCTTCSSC--EEEEETTTEEE
T ss_pred -----ccccc-ccchhhh----HHHHHHH--H-------hccccCCCHHHHHHHHHHHhcCcCCCCc--EEEecCCCccc
Confidence 00000 0000000 0000000 0 0123478999999999999987665666 999987 4455
Q ss_pred HHH
Q 011707 385 VNQ 387 (479)
Q Consensus 385 ~~e 387 (479)
+.|
T Consensus 255 ~~~ 257 (267)
T 2gdz_A 255 FQD 257 (267)
T ss_dssp ECC
T ss_pred ccC
Confidence 544
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-22 Score=189.00 Aligned_cols=175 Identities=19% Similarity=0.187 Sum_probs=135.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++|
T Consensus 5 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~-~~~~~~~~~~D~~~ 67 (262)
T 1zem_A 5 FNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREAL----------------EKAEASVRE-KGVEARSYVCDVTS 67 (262)
T ss_dssp TTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHT-TTSCEEEEECCTTC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHh-cCCcEEEEEecCCC
Confidence 5689999999999999999999999999999998864321 111112211 13468899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEccccc-Cc-ccccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeeccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQR-SA-PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMG 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~-~~-~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~ 232 (479)
+++++++++.. ++|+||||||.. .. +....+.+++..++++|+.|+.++++++... +.+ +||++||..
T Consensus 68 ~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~ 146 (262)
T 1zem_A 68 EEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYG-RIVNTASMA 146 (262)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHH
T ss_pred HHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCccccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCc-EEEEEcchh
Confidence 99888877643 799999999975 22 2223355677889999999999999887543 445 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecC
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGV 300 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp 300 (479)
.+.. ......|+.||++.+.+++.++.++ |+++++++||.|..+
T Consensus 147 ~~~~------------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~vn~v~PG~v~t~ 193 (262)
T 1zem_A 147 GVKG------------------------PPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPG 193 (262)
T ss_dssp HHSC------------------------CTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSS
T ss_pred hccC------------------------CCCCchHHHHHHHHHHHHHHHHHHHHhhCeEEEEEecCCcCcc
Confidence 5421 1236789999999999999998874 899999999998665
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.9e-23 Score=194.16 Aligned_cols=233 Identities=10% Similarity=0.083 Sum_probs=167.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.++||++|||||+++||.++++.|+++|++|++.+|.... +.+..+.+... +.++..+.+|++
T Consensus 6 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~----------------~~~~~~~l~~~-g~~~~~~~~Dv~ 68 (255)
T 4g81_D 6 DLTGKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATL----------------LAESVDTLTRK-GYDAHGVAFDVT 68 (255)
T ss_dssp CCTTCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHH----------------HHHHHHHHHHT-TCCEEECCCCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHhc-CCcEEEEEeeCC
Confidence 4689999999999999999999999999999999886432 22223333222 457889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|++|||||...... ...++++|++++++|+.|++.+.+++.. .+.+.+||++||..
T Consensus 69 ~~~~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~~G~IVnisS~~ 148 (255)
T 4g81_D 69 DELAIEAAFSKLDAEGIHVDILINNAGIQYRKPMVELELENWQKVIDTNLTSAFLVSRSAAKRMIARNSGGKIINIGSLT 148 (255)
T ss_dssp CHHHHHHHHHHHHHTTCCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHCCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHccCCCEEEEEeehh
Confidence 999988877654 6999999999865443 3447788999999999999999887732 22223999999964
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
... +......|+.||++...+.+.++.++ ||+++.|-||.|.-|.....
T Consensus 149 ~~~------------------------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~---- 200 (255)
T 4g81_D 149 SQA------------------------ARPTVAPYTAAKGGIKMLTCSMAAEWAQFNIQTNAIGPGYILTDMNTAL---- 200 (255)
T ss_dssp GTS------------------------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGHHH----
T ss_pred hcC------------------------CCCCchhHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCCchhhcc----
Confidence 331 12236789999999999999999985 89999999999976532110
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQ 382 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~ 382 (479)
.. . ..+...+....|+ .-+...+|+|.+++.++......-.++++.+.|+.
T Consensus 201 --~~--------~---~~~~~~~~~~~Pl---------~R~g~pediA~~v~fL~S~~a~~iTG~~i~VDGG~ 251 (255)
T 4g81_D 201 --IE--------D---KQFDSWVKSSTPS---------QRWGRPEELIGTAIFLSSKASDYINGQIIYVDGGW 251 (255)
T ss_dssp --HT--------C---HHHHHHHHHHSTT---------CSCBCGGGGHHHHHHHHSGGGTTCCSCEEEESTTG
T ss_pred --cC--------C---HHHHHHHHhCCCC---------CCCcCHHHHHHHHHHHhCchhCCCcCCEEEECCCe
Confidence 00 0 1112222222221 23567889999999988654442222389887763
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-22 Score=185.27 Aligned_cols=216 Identities=13% Similarity=0.102 Sum_probs=161.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+||||||+++||++++++|+++|++|+++|+.... .+...+ ...++.++.+|++|++
T Consensus 2 nK~vlVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~--------------------~~~~~~-~~~~~~~~~~Dv~~~~ 60 (247)
T 3ged_A 2 NRGVIVTGGGHGIGKQICLDFLEAGDKVCFIDIDEKR--------------------SADFAK-ERPNLFYFHGDVADPL 60 (247)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HHHHHT-TCTTEEEEECCTTSHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCHHH--------------------HHHHHH-hcCCEEEEEecCCCHH
Confidence 5899999999999999999999999999999986432 111111 1357889999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeeccccccC
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTMGEYGT 236 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~~v~g~ 236 (479)
+++++++.. ++|++|||||...... ...+.++|++++++|+.|++.+.+++... +.+ +||++||...+.
T Consensus 61 ~v~~~v~~~~~~~g~iDiLVNNAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~G-~IInisS~~~~~- 138 (247)
T 3ged_A 61 TLKKFVEYAMEKLQRIDVLVNNACRGSKGILSSLLYEEFDYILSVGLKAPYELSRLCRDELIKNKG-RIINIASTRAFQ- 138 (247)
T ss_dssp HHHHHHHHHHHHHSCCCEEEECCCCCCCCGGGTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTC-EEEEECCGGGTS-
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCC-cEEEEeeccccc-
Confidence 888877643 7999999999765433 33466789999999999999998887542 234 999999954331
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
+......|+.||++...+.+.++.++ |++++.|.||.|--+...
T Consensus 139 -----------------------~~~~~~~Y~asKaal~~ltk~lA~ela~~IrVN~I~PG~i~t~~~~----------- 184 (247)
T 3ged_A 139 -----------------------SEPDSEAYASAKGGIVALTHALAMSLGPDVLVNCIAPGWINVTEQQ----------- 184 (247)
T ss_dssp -----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSBCCCC-------------
T ss_pred -----------------------CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEecCcCCCCCcH-----------
Confidence 12236789999999999999999986 699999999998655321
Q ss_pred cCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.+........| ..-+...+|+|.+++.++...-..|+ ++.+.|+
T Consensus 185 ------------~~~~~~~~~~P---------l~R~g~pediA~~v~fL~s~~~iTG~--~i~VDGG 228 (247)
T 3ged_A 185 ------------EFTQEDCAAIP---------AGKVGTPKDISNMVLFLCQQDFITGE--TIIVDGG 228 (247)
T ss_dssp -------------CCHHHHHTST---------TSSCBCHHHHHHHHHHHHHCSSCCSC--EEEESTT
T ss_pred ------------HHHHHHHhcCC---------CCCCcCHHHHHHHHHHHHhCCCCCCC--eEEECcC
Confidence 11122222222 22456789999999999986544566 8988765
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.3e-22 Score=187.23 Aligned_cols=219 Identities=17% Similarity=0.148 Sum_probs=154.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+ ..++.++.+|++|+++
T Consensus 1 k~vlVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~----~~~~~~~~~Dv~~~~~ 60 (248)
T 3asu_A 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQERL----------------QELKDEL----GDNLYIAQLDVRNRAA 60 (248)
T ss_dssp CEEEETTTTSTTHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHH----CTTEEEEECCTTCHHH
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHh----cCceEEEEcCCCCHHH
Confidence 5899999999999999999999999999998854311 1111111 2468899999999999
Q ss_pred HHHHhhhc-----CCCEEEEcccccC--cccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccccc
Q 011707 167 LSESFKSF-----EPDAVVHFGEQRS--APYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 167 ~~~~~~~~-----~~D~Vih~A~~~~--~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~g 235 (479)
++++++.. ++|+||||||... .+....+.+++..++++|+.|+.++++++. +.+.+ +||++||...+.
T Consensus 61 v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~~~~ 139 (248)
T 3asu_A 61 IEEMLASLPAEWCNIDILVNNAGLALGMEPAHKASVEDWETMIDTNNKGLVYMTRAVLPGMVERNHG-HIINIGSTAGSW 139 (248)
T ss_dssp HHHHHHTSCTTTCCCCEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTS
T ss_pred HHHHHHHHHHhCCCCCEEEECCCcCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCc-eEEEEccchhcc
Confidence 99988754 6999999999753 122334556788899999999999998885 34555 999999975442
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeec-CCCCchhhhHhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYG-VRTDETAMHEEL 311 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~G-p~~~~~~~~~~~ 311 (479)
+..+...|+.||++.+.+++.++.++ |+++++++||.|.| +.....
T Consensus 140 ------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~gT~~~~~~------ 189 (248)
T 3asu_A 140 ------------------------PYAGGNVYGATKAFVRQFSLNLRTDLHGTAVRVTDIEPGLVGGTEFSNVR------ 189 (248)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCCEEEEEEECSBCC-------------
T ss_pred ------------------------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCcEEEEEeccccccCcchhhc------
Confidence 22336799999999999999999885 89999999999985 421100
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC-CCCceEEEeCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ-PGEFRVFNQFT 380 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~-~g~~~~~ni~~ 380 (479)
...- ..... ..+ ....+++.+|+|++++.++..+.. .++ .+.+.+
T Consensus 190 -------------~~~~-~~~~~----~~~----~~~~~~~p~dvA~~v~~l~s~~~~~~g~--~i~v~~ 235 (248)
T 3asu_A 190 -------------FKGD-DGKAE----KTY----QNTVALTPEDVSEAVWWVSTLPAHVNIN--TLEMMP 235 (248)
T ss_dssp -------------------------------------CCBCHHHHHHHHHHHHHSCTTCCCC--EEEECC
T ss_pred -------------ccCc-hHHHH----HHH----hccCCCCHHHHHHHHHHHhcCCccceee--EEEEcc
Confidence 0000 00000 000 012346899999999999986433 333 666655
|
| >2qhx_A Pteridine reductase 1; oxidoreductase, short-chain dehydrogenase/reductase, trypanosomatid, pterin salvage, drug resistance; HET: NAP FE1; 2.61A {Leishmania major} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-22 Score=195.88 Aligned_cols=225 Identities=12% Similarity=0.043 Sum_probs=163.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEe-cccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD-SLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~d-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+++|+||||||+|+||.+++++|+++|++|++++ |..... .+..+.+....+.++.++.+|++
T Consensus 44 l~~k~~lVTGas~GIG~aia~~La~~G~~Vv~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~Dl~ 107 (328)
T 2qhx_A 44 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEA----------------NALSATLNARRPNSAITVQADLS 107 (328)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH----------------HHHHHHHHHHSTTCEEEEECCCS
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCCHHHH----------------HHHHHHHHhhcCCeEEEEEeeCC
Confidence 5689999999999999999999999999999998 653211 11111221112357899999999
Q ss_pred ChH-----------------HHHHHhhhc-----CCCEEEEcccccCcccc-ccc--------------ccccchhhhhh
Q 011707 163 DFE-----------------FLSESFKSF-----EPDAVVHFGEQRSAPYS-MID--------------RSRAVFTQHNN 205 (479)
Q Consensus 163 d~~-----------------~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~--------------~~~~~~~~~~N 205 (479)
|.+ +++++++.. ++|+||||||....... ..+ .+++..++++|
T Consensus 108 d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vN 187 (328)
T 2qhx_A 108 NVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSN 187 (328)
T ss_dssp SSCBCC-------CCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-------------CHHHHHHHHHHHHH
T ss_pred CchhccccccccccccccHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHH
Confidence 998 888887654 79999999997643221 123 55677889999
Q ss_pred HHHHHHHHHHHHH----cC------CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHH
Q 011707 206 VIGTLNVLFAMKE----FR------QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDS 275 (479)
Q Consensus 206 v~g~~~ll~~a~~----~g------~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 275 (479)
+.|+.++++++.. .+ .+ +||++||...+. +..+...|+.+|++.+
T Consensus 188 ~~g~~~l~~~~~~~m~~~~~~~~~~~g-~IV~isS~~~~~------------------------~~~~~~~Y~asKaal~ 242 (328)
T 2qhx_A 188 AIAPYFLIKAFAHRVAGTPAKHRGTNY-SIINMVDAMTNQ------------------------PLLGYTIYTMAKGALE 242 (328)
T ss_dssp THHHHHHHHHHHHHHHHSCGGGSCSCE-EEEEECCTTTTS------------------------CCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCcCCCCCc-EEEEECchhhcc------------------------CCCCcHHHHHHHHHHH
Confidence 9999999998854 23 34 999999975442 2234689999999999
Q ss_pred HHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCcee-ccc
Q 011707 276 HNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTR-GYL 351 (479)
Q Consensus 276 ~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 351 (479)
.+++.++.++ |+++++|+||.|..+. .. +......+....+ .. .+.
T Consensus 243 ~l~~~la~el~~~gIrvn~v~PG~v~T~~-~~--------------------~~~~~~~~~~~~p---------~~~r~~ 292 (328)
T 2qhx_A 243 GLTRSAALELAPLQIRVNGVGPGLSVLVD-DM--------------------PPAVWEGHRSKVP---------LYQRDS 292 (328)
T ss_dssp HHHHHHHHHHGGGTEEEEEEEESSBSCCC-CS--------------------CHHHHHHHHTTCT---------TTTSCB
T ss_pred HHHHHHHHHHhhcCcEEEEEecCcccCCc-cc--------------------cHHHHHHHHhhCC---------CCCCCC
Confidence 9999999885 8999999999998875 21 0122222222211 11 467
Q ss_pred cHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 352 DIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 352 ~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.++|+|++++.++..... .|+ ++++.++
T Consensus 293 ~pedvA~~v~~l~s~~~~~itG~--~i~vdGG 322 (328)
T 2qhx_A 293 SAAEVSDVVIFLCSSKAKYITGT--CVKVDGG 322 (328)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred CHHHHHHHHHHHhCccccCccCc--EEEECCC
Confidence 899999999999975333 455 9998875
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-22 Score=194.32 Aligned_cols=220 Identities=19% Similarity=0.156 Sum_probs=153.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~ 162 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+... ...++.++.+|++
T Consensus 30 l~~k~vlVTGasggIG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~~Dl~ 93 (279)
T 1xg5_A 30 WRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGNI----------------EELAAECKSAGYPGTLIPYRCDLS 93 (279)
T ss_dssp GTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHTTCSSEEEEEECCTT
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECChHHH----------------HHHHHHHHhcCCCceEEEEEecCC
Confidence 5689999999999999999999999999999999854311 1111111111 1246888999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHH----HHHHHHHHHHcCC-cceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIG----TLNVLFAMKEFRQ-ECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g----~~~ll~~a~~~g~-~~~~V~~SS~ 231 (479)
|+++++++++.. ++|+||||||...... ...+.+++..++++|+.| ++.+++.+++.+. ..+||++||.
T Consensus 94 ~~~~v~~~~~~~~~~~g~iD~vi~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~l~~~~~~~~~~g~iv~isS~ 173 (279)
T 1xg5_A 94 NEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININSM 173 (279)
T ss_dssp CHHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECCG
T ss_pred CHHHHHHHHHHHHHhCCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCceEEEEcCh
Confidence 999998887643 6999999999754322 223455678889999999 5666666777664 2399999997
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-----CCceEEeecCeeecCCCCchh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-----GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
..+... +..+...|+.+|++.+.+++.++.++ ++++++++||.|.++....
T Consensus 174 ~~~~~~----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~~i~v~~v~Pg~v~t~~~~~-- 229 (279)
T 1xg5_A 174 SGHRVL----------------------PLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAFK-- 229 (279)
T ss_dssp GGTSCC----------------------SCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHHH--
T ss_pred hhcccC----------------------CCCCCchhHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEecCcccchhhhh--
Confidence 765321 22346789999999999999888763 6999999999998763100
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
.. ......+. .. .....+++++|+|++++.++..+..
T Consensus 230 ----~~---------~~~~~~~~-~~------------~~~~~~~~~~dvA~~i~~l~~~~~~ 266 (279)
T 1xg5_A 230 ----LH---------DKDPEKAA-AT------------YEQMKCLKPEDVAEAVIYVLSTPAH 266 (279)
T ss_dssp ----HT---------TTCHHHHH-HH------------HC---CBCHHHHHHHHHHHHHSCTT
T ss_pred ----hc---------ccChhHHh-hh------------cccccCCCHHHHHHHHHHHhcCCcc
Confidence 00 00000000 00 0112468999999999999987543
|
| >3gdg_A Probable NADP-dependent mannitol dehydrogenase; rossmann fold, beta-alpha-beta motifs, open twisted sheet, A NADP, oxidoreductase; 2.30A {Cladosporium herbarum} SCOP: c.2.1.0 PDB: 3gdf_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.4e-23 Score=195.64 Aligned_cols=233 Identities=14% Similarity=0.015 Sum_probs=168.9
Q ss_pred CCCCcEEEEEcCC--chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGD--GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.+++|+||||||+ |+||.+++++|+++|++|+++++..... ..+..+.+....+.++.++.+|
T Consensus 17 ~l~~k~vlITGas~~~giG~~~a~~l~~~G~~v~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~~D 81 (267)
T 3gdg_A 17 SLKGKVVVVTGASGPKGMGIEAARGCAEMGAAVAITYASRAQG---------------AEENVKELEKTYGIKAKAYKCQ 81 (267)
T ss_dssp CCTTCEEEETTCCSSSSHHHHHHHHHHHTSCEEEECBSSSSSH---------------HHHHHHHHHHHHCCCEECCBCC
T ss_pred CcCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEEeCCcchh---------------HHHHHHHHHHhcCCceeEEecC
Confidence 4678999999999 9999999999999999999988764321 0122222322234678999999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeec
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGT 230 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS 230 (479)
++|.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++ ++.+.+ +||++||
T Consensus 82 l~~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~isS 160 (267)
T 3gdg_A 82 VDSYESCEKLVKDVVADFGQIDAFIANAGATADSGILDGSVEAWNHVVQVDLNGTFHCAKAVGHHFKERGTG-SLVITAS 160 (267)
T ss_dssp TTCHHHHHHHHHHHHHHTSCCSEEEECCCCCCCSCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCCcCCCCCcccCCHHHHHHHHHhcchHHHHHHHHHHHHHHHcCCc-eEEEEcc
Confidence 99999998888754 7899999999765432 23355677889999999999999988 444555 9999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhC--CceEEeecCeeecCCCCchhhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG--IRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--l~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
...+... ...+...|+.||++.+.+++.++.+++ ++++.+.||.|..+....
T Consensus 161 ~~~~~~~----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~i~v~~v~PG~v~t~~~~~---- 214 (267)
T 3gdg_A 161 MSGHIAN----------------------FPQEQTSYNVAKAGCIHMARSLANEWRDFARVNSISPGYIDTGLSDF---- 214 (267)
T ss_dssp GGGTSCC----------------------SSSCCHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEEECCEECSCGGG----
T ss_pred ccccccC----------------------CCCCCCcchHHHHHHHHHHHHHHHHhccCcEEEEEECCccccchhhh----
Confidence 6543211 112468899999999999999999864 899999999997664211
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
............ .....+.+++|+|++++.++......-.++++++.++
T Consensus 215 ---------------~~~~~~~~~~~~---------~~~~r~~~~~dva~~~~~l~s~~~~~itG~~i~vdgG 263 (267)
T 3gdg_A 215 ---------------VPKETQQLWHSM---------IPMGRDGLAKELKGAYVYFASDASTYTTGADLLIDGG 263 (267)
T ss_dssp ---------------SCHHHHHHHHTT---------STTSSCEETHHHHHHHHHHHSTTCTTCCSCEEEESTT
T ss_pred ---------------CCHHHHHHHHhc---------CCCCCCcCHHHHHhHhheeecCccccccCCEEEECCc
Confidence 011122222221 2335678899999999999976544322239999875
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-22 Score=190.88 Aligned_cols=227 Identities=15% Similarity=0.141 Sum_probs=166.3
Q ss_pred CCCCcEEEEEcCCch--hhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDGY--CGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG~--iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.+++|+||||||+|+ ||.+++++|+++|++|++++|... .+.++.+.... .++.++.+|
T Consensus 23 ~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~------------------~~~~~~l~~~~-~~~~~~~~D 83 (280)
T 3nrc_A 23 FLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQF------------------KDRVEKLCAEF-NPAAVLPCD 83 (280)
T ss_dssp TTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTC------------------HHHHHHHHGGG-CCSEEEECC
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchH------------------HHHHHHHHHhc-CCceEEEee
Confidence 357899999999966 999999999999999999988541 11222222211 358899999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCcc-----ccc-ccccccchhhhhhHHHHHHHHHHHHHc---CCcceEE
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAP-----YSM-IDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLV 226 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~-----~~~-~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V 226 (479)
++|.++++++++.. ++|+||||||..... ... .+.+++..++++|+.++.++++++... +. .+||
T Consensus 84 l~~~~~v~~~~~~~~~~~g~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g~iv 162 (280)
T 3nrc_A 84 VISDQEIKDLFVELGKVWDGLDAIVHSIAFAPRDQLEGNFIDCVTREGFSIAHDISAYSFAALAKEGRSMMKNRN-ASMV 162 (280)
T ss_dssp TTCHHHHHHHHHHHHHHCSSCCEEEECCCCCCGGGSSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTT-CEEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCCEEEECCccCCCcccCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CeEE
Confidence 99999998888754 689999999976431 111 455567888999999999999998654 23 3999
Q ss_pred EeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCC
Q 011707 227 KLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTD 303 (479)
Q Consensus 227 ~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~ 303 (479)
++||...+. +......|+.||++.+.+++.++.+ .|+++++++||.|..+...
T Consensus 163 ~isS~~~~~------------------------~~~~~~~Y~asKaal~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~ 218 (280)
T 3nrc_A 163 ALTYIGAEK------------------------AMPSYNTMGVAKASLEATVRYTALALGEDGIKVNAVSAGPIKTLAAS 218 (280)
T ss_dssp EEECGGGTS------------------------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCCCCSGGG
T ss_pred EEecccccc------------------------CCCCchhhHHHHHHHHHHHHHHHHHHHHcCcEEEEEeeccccchhhh
Confidence 999965542 2234689999999999999999987 4899999999999887532
Q ss_pred chhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 304 ETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 304 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
... ....+........ ....+..++|+|++++.++..... .|+ ++++.++
T Consensus 219 ~~~-----------------~~~~~~~~~~~~~---------p~~~~~~pedvA~~v~~l~s~~~~~~tG~--~i~vdgG 270 (280)
T 3nrc_A 219 GIS-----------------NFKKMLDYNAMVS---------PLKKNVDIMEVGNTVAFLCSDMATGITGE--VVHVDAG 270 (280)
T ss_dssp GCT-----------------THHHHHHHHHHHS---------TTCSCCCHHHHHHHHHHTTSGGGTTCCSC--EEEESTT
T ss_pred cCc-----------------chHHHHHHHHhcC---------CCCCCCCHHHHHHHHHHHhCcccCCcCCc--EEEECCC
Confidence 110 1122222222222 123568899999999999876443 455 9999875
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=189.16 Aligned_cols=203 Identities=15% Similarity=0.149 Sum_probs=149.7
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+ +.++.++.+|++|.
T Consensus 2 s~k~vlVTGas~GIG~a~a~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~----~~~~~~~~~D~~~~ 61 (235)
T 3l6e_A 2 SLGHIIVTGAGSGLGRALTIGLVERGHQVSMMGRRYQRL----------------QQQELLL----GNAVIGIVADLAHH 61 (235)
T ss_dssp -CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHH----GGGEEEEECCTTSH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHh----cCCceEEECCCCCH
Confidence 478999999999999999999999999999999864321 1111111 23688999999999
Q ss_pred HHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeecccccc
Q 011707 165 EFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTMGEYG 235 (479)
Q Consensus 165 ~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~~v~g 235 (479)
++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++... ..+ +||++||...+.
T Consensus 62 ~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~-~iv~isS~~~~~ 140 (235)
T 3l6e_A 62 EDVDVAFAAAVEWGGLPELVLHCAGTGEFGPVGVYTAEQIRRVMESNLVSTILVAQQTVRLIGERGG-VLANVLSSAAQV 140 (235)
T ss_dssp HHHHHHHHHHHHHHCSCSEEEEECCCC------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCE-EEEEECCEECCS
T ss_pred HHHHHHHHHHHHhcCCCcEEEECCCCCCCCChHhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCC-EEEEEeCHHhcC
Confidence 9998887754 6999999999854322 23356678889999999999999988542 223 899999964332
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
+......|+.||++.+.+++.++.++ |+++++++||.|..+....
T Consensus 141 ------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~-------- 188 (235)
T 3l6e_A 141 ------------------------GKANESLYCASKWGMRGFLESLRAELKDSPLRLVNLYPSGIRSEFWDN-------- 188 (235)
T ss_dssp ------------------------SCSSHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEEEECCCC-----------
T ss_pred ------------------------CCCCCcHHHHHHHHHHHHHHHHHHHhhccCCEEEEEeCCCccCcchhc--------
Confidence 22236789999999999999999875 7999999999997663210
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
.. . .....++.++|+|++++.++..+..
T Consensus 189 ---------------~~-----~---------~~~~~~~~pedvA~~v~~l~~~~~~ 216 (235)
T 3l6e_A 189 ---------------TD-----H---------VDPSGFMTPEDAAAYMLDALEARSS 216 (235)
T ss_dssp -------------------------------------CBCHHHHHHHHHHHTCCCSS
T ss_pred ---------------cC-----C---------CCCcCCCCHHHHHHHHHHHHhCCCC
Confidence 00 0 0112578999999999999986543
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=99.89 E-value=7e-22 Score=189.75 Aligned_cols=228 Identities=15% Similarity=0.079 Sum_probs=161.8
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+.+++|++|||||+|+||.+++++|+++|++|++++|........ . ..+.+..+.+.. .+.++.++.+|+
T Consensus 5 m~l~~k~vlVTGas~GIG~aia~~l~~~G~~V~~~~r~~~~~~~~-------~--~~~~~~~~~~~~-~~~~~~~~~~Dv 74 (285)
T 3sc4_A 5 MSLRGKTMFISGGSRGIGLAIAKRVAADGANVALVAKSAEPHPKL-------P--GTIYTAAKEIEE-AGGQALPIVGDI 74 (285)
T ss_dssp -CCTTCEEEEESCSSHHHHHHHHHHHTTTCEEEEEESCCSCCSSS-------C--CCHHHHHHHHHH-HTSEEEEEECCT
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECChhhhhhh-------h--HHHHHHHHHHHh-cCCcEEEEECCC
Confidence 346789999999999999999999999999999999865421110 0 011111222221 245799999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~ 231 (479)
+|.++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++... +.+ +||++||.
T Consensus 75 ~~~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iv~isS~ 153 (285)
T 3sc4_A 75 RDGDAVAAAVAKTVEQFGGIDICVNNASAINLGSIEEVPLKRFDLMNGIQVRGTYAVSQSCIPHMKGRDNP-HILTLSPP 153 (285)
T ss_dssp TSHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCTTTSCHHHHHHHHHHHHHHHHHHHHHHGGGTTTSSSC-EEEECCCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECCh
Confidence 9999998888754 7999999999865432 23356677889999999999999988654 444 99999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+... ..+...|+.||++.+.+++.++.+ .|+++++++||.+...
T Consensus 154 ~~~~~~-----------------------~~~~~~Y~asKaal~~~~~~la~e~~~~gI~vn~v~PG~~v~t-------- 202 (285)
T 3sc4_A 154 IRLEPK-----------------------WLRPTPYMMAKYGMTLCALGIAEELRDAGIASNTLWPRTTVAT-------- 202 (285)
T ss_dssp CCCSGG-----------------------GSCSHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECSSCBCC--------
T ss_pred hhccCC-----------------------CCCCchHHHHHHHHHHHHHHHHHHhcccCcEEEEEeCCCcccc--------
Confidence 433210 023588999999999999999988 4899999999843221
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC-CCCCceEEEeC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA-QPGEFRVFNQF 379 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~-~~g~~~~~ni~ 379 (479)
.+........ .....+...+|+|++++.++..+. ..|+ ++.+.
T Consensus 203 ------------------~~~~~~~~~~--------~~~~r~~~pedvA~~~~~l~s~~~~~tG~--~i~~d 246 (285)
T 3sc4_A 203 ------------------AAVQNLLGGD--------EAMARSRKPEVYADAAYVVLNKPSSYTGN--TLLCE 246 (285)
T ss_dssp ------------------HHHHHHHTSC--------CCCTTCBCTHHHHHHHHHHHTSCTTCCSC--EEEHH
T ss_pred ------------------HHHHhhcccc--------ccccCCCCHHHHHHHHHHHhCCcccccce--EEEEc
Confidence 1122222211 123356789999999999998765 2333 55543
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-22 Score=185.12 Aligned_cols=215 Identities=17% Similarity=0.141 Sum_probs=155.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+.. .+.++.++.+|++|
T Consensus 5 l~~k~~lVTGas~gIG~aia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~l~~-~~~~~~~~~~Dv~~ 67 (247)
T 2jah_A 5 LQGKVALITGASSGIGEATARALAAEGAAVAIAARRVEKL----------------RALGDELTA-AGAKVHVLELDVAD 67 (247)
T ss_dssp TTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHH-TTCCEEEEECCTTC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHh-cCCcEEEEECCCCC
Confidence 5689999999999999999999999999999998864311 111112211 13578899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|+||||||...... ...+++++.+++++|+.|+.++++++.. .+ + +||++||...
T Consensus 68 ~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~-g-~iv~isS~~~ 145 (247)
T 2jah_A 68 RQGVDAAVASTVEALGGLDILVNNAGIMLLGPVEDADTTDWTRMIDTNLLGLMYMTRAALPHLLRSK-G-TVVQMSSIAG 145 (247)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C-EEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC-C-EEEEEccHHh
Confidence 99998887643 7999999999754322 2335567788999999999999988753 34 4 9999999654
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +......|+.||++.+.+++.++.++ |+++++++||.|..+.....
T Consensus 146 ~~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~----- 196 (247)
T 2jah_A 146 RV------------------------NVRNAAVYQATKFGVNAFSETLRQEVTERGVRVVVIEPGTTDTELRGHI----- 196 (247)
T ss_dssp TC------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBSSSGGGGC-----
T ss_pred cC------------------------CCCCCcHHHHHHHHHHHHHHHHHHHhcccCcEEEEEECCCCCCcchhcc-----
Confidence 42 12336789999999999999998874 89999999999987742110
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA 368 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~ 368 (479)
............ + + ...+++.+|+|++++.++..+.
T Consensus 197 ----------~~~~~~~~~~~~----~----~----~~~~~~pedvA~~v~~l~s~~~ 232 (247)
T 2jah_A 197 ----------THTATKEMYEQR----I----S----QIRKLQAQDIAEAVRYAVTAPH 232 (247)
T ss_dssp ----------CCHHHHHHHHHH----T----T----TSCCBCHHHHHHHHHHHHHSCT
T ss_pred ----------cchhhHHHHHhc----c----c----ccCCCCHHHHHHHHHHHhCCCc
Confidence 000011111111 0 0 1125899999999999998653
|
| >1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=189.92 Aligned_cols=207 Identities=13% Similarity=0.036 Sum_probs=154.1
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|+||||||+|+||.+++++|+++|++|++++|..... .....++.+|++|+
T Consensus 2 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~---------------------------~~~~~~~~~D~~~~ 54 (236)
T 1ooe_A 2 SSGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQ---------------------------ADSNILVDGNKNWT 54 (236)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTT---------------------------SSEEEECCTTSCHH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEecCcccc---------------------------ccccEEEeCCCCCH
Confidence 478999999999999999999999999999999864310 01356778999999
Q ss_pred HHHHHHhhh-------cCCCEEEEcccccCccc--ccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccc
Q 011707 165 EFLSESFKS-------FEPDAVVHFGEQRSAPY--SMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEY 234 (479)
Q Consensus 165 ~~~~~~~~~-------~~~D~Vih~A~~~~~~~--~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~ 234 (479)
++++++++. .++|+||||||...... ...+.+++...+++|+.|+.++++++...- ...+||++||...+
T Consensus 55 ~~~~~~~~~~~~~~~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~isS~~~~ 134 (236)
T 1ooe_A 55 EQEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAM 134 (236)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG
T ss_pred HHHHHHHHHHHHHhCCCCCCEEEECCcccCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhccCCEEEEECchhhc
Confidence 988877763 27999999999754322 223445678889999999999999987642 12399999997655
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhC-----CceEEeecCeeecCCCCchhhhH
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG-----IRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g-----l~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
. +..+...|+.+|++.+.+++.++.+++ +++++++||.|.++.
T Consensus 135 ~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~gi~v~~v~Pg~v~t~~-------- 182 (236)
T 1ooe_A 135 G------------------------PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTPM-------- 182 (236)
T ss_dssp S------------------------CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCHH--------
T ss_pred c------------------------CCCCcHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEEecCcccCcc--------
Confidence 2 223468999999999999999988754 999999999997762
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC---CCCCceEEEeCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA---QPGEFRVFNQFT 380 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~---~~g~~~~~ni~~ 380 (479)
....... .....+++.+|+|++++.++..+. ..|+ ++++.+
T Consensus 183 -------------------~~~~~~~---------~~~~~~~~~~dvA~~i~~~l~s~~~~~~~G~--~~~v~g 226 (236)
T 1ooe_A 183 -------------------NRKWMPN---------ADHSSWTPLSFISEHLLKWTTETSSRPSSGA--LLKITT 226 (236)
T ss_dssp -------------------HHHHSTT---------CCGGGCBCHHHHHHHHHHHHHCGGGCCCTTC--EEEEEE
T ss_pred -------------------hhhcCCC---------ccccccCCHHHHHHHHHHHHcCCCccccccc--EEEEec
Confidence 1111111 112346788999999997774322 2355 787765
|
| >1sny_A Sniffer CG10964-PA; alpha and beta protein, rossmann fold, dinucleotide binding oxidoreductase; HET: NAP; 1.75A {Drosophila melanogaster} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=4.7e-22 Score=189.09 Aligned_cols=216 Identities=13% Similarity=0.066 Sum_probs=159.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCC---CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKG---YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIG 159 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G---~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 159 (479)
.+++|+||||||+|+||.+++++|+++| ++|++++|..... +.+..+... +.++.++.+
T Consensus 18 ~~~~k~vlITGasggIG~~la~~L~~~G~~~~~V~~~~r~~~~~-----------------~~~~~l~~~-~~~~~~~~~ 79 (267)
T 1sny_A 18 GSHMNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA-----------------KELEDLAKN-HSNIHILEI 79 (267)
T ss_dssp --CCSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSC-----------------HHHHHHHHH-CTTEEEEEC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHhcCCCCcEEEEEecChhhh-----------------HHHHHhhcc-CCceEEEEe
Confidence 4578999999999999999999999999 9999999864321 011111111 357899999
Q ss_pred ccCChHHHHHHhhhc-------CCCEEEEcccccC-c-ccccccccccchhhhhhHHHHHHHHHHHHHc----------C
Q 011707 160 DICDFEFLSESFKSF-------EPDAVVHFGEQRS-A-PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----------R 220 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~-------~~D~Vih~A~~~~-~-~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----------g 220 (479)
|++|.++++++++.. ++|+||||||... . .....+.+++..++++|+.|+.++++++... +
T Consensus 80 Dl~~~~~v~~~~~~~~~~~g~~~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~~~~~ 159 (267)
T 1sny_A 80 DLRNFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQ 159 (267)
T ss_dssp CTTCGGGHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred cCCChHHHHHHHHHHHHhcCCCCccEEEECCCcCCCccccccCCHHHHHHHHhhhchHHHHHHHHHHHHHhhcccccccc
Confidence 999999998888743 5999999999764 2 1222344567788999999999999988553 2
Q ss_pred -----CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEe
Q 011707 221 -----QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDL 292 (479)
Q Consensus 221 -----~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~iv 292 (479)
.+ +||++||...+.... +..+...|+.+|++.+.+++.++.+ .|++++++
T Consensus 160 ~~~~~~~-~iv~isS~~~~~~~~---------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v 217 (267)
T 1sny_A 160 PMGVGRA-AIINMSSILGSIQGN---------------------TDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSL 217 (267)
T ss_dssp CSSTTTC-EEEEECCGGGCSTTC---------------------CSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEE
T ss_pred cccCCCc-eEEEEecccccccCC---------------------CCCCchHHHHHHHHHHHHHHHHHHHhhcCCcEEEEe
Confidence 23 899999976654221 1124678999999999999999888 58999999
Q ss_pred ecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--C
Q 011707 293 NQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--P 370 (479)
Q Consensus 293 Rp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~ 370 (479)
|||.|..+... . ..++..+|+++.++.++..... .
T Consensus 218 ~Pg~v~t~~~~--------------------------------~-----------~~~~~~~~~a~~~~~~~~~~~~~~~ 254 (267)
T 1sny_A 218 HPGWVKTDMGG--------------------------------S-----------SAPLDVPTSTGQIVQTISKLGEKQN 254 (267)
T ss_dssp CCCSBCSTTTC--------------------------------T-----------TCSBCHHHHHHHHHHHHHHCCGGGT
T ss_pred CCcceecCCCC--------------------------------C-----------CCCCCHHHHHHHHHHHHHhcCcCCC
Confidence 99999765310 0 1347889999999999986433 3
Q ss_pred CCceEEEeCCCCc
Q 011707 371 GEFRVFNQFTEQF 383 (479)
Q Consensus 371 g~~~~~ni~~~~~ 383 (479)
|. .+++.++.+
T Consensus 255 G~--~~~~~g~~~ 265 (267)
T 1sny_A 255 GG--FVNYDGTPL 265 (267)
T ss_dssp TC--EECTTSCBC
T ss_pred Cc--EEccCCcCc
Confidence 44 666555443
|
| >1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ... | Back alignment and structure |
|---|
Probab=99.89 E-value=4.6e-22 Score=191.17 Aligned_cols=207 Identities=14% Similarity=0.074 Sum_probs=152.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+........++.++.+|++|
T Consensus 26 ~~~k~vlITGasggIG~~la~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~Dl~d 89 (286)
T 1xu9_A 26 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKETL----------------QKVVSHCLELGAASAHYIAGTMED 89 (286)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHHTCSEEEEEECCTTC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHHhCCCceEEEeCCCCC
Confidence 5689999999999999999999999999999999864321 111111111222368899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEc-ccccCcccccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeeccccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHF-GEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTMGEY 234 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~-A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~~v~ 234 (479)
.++++++++.. ++|+|||| ||.........+.+++..++++|+.|+.++++++... +.+ +||++||...+
T Consensus 90 ~~~v~~~~~~~~~~~g~iD~li~naag~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~~g-~iv~isS~~~~ 168 (286)
T 1xu9_A 90 MTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNG-SIVVVSSLAGK 168 (286)
T ss_dssp HHHHHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGT
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCccCCCCccccCCHHHHHHHHHHHhhHHHHHHHHHHHHHHHCCC-EEEEECCcccc
Confidence 99888887643 79999999 5654333223355567788999999999999888542 234 99999997654
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-----CCceEEeecCeeecCCCCchhhhH
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-----GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
. +..+...|+.||++.+.+++.++.++ ++++++++||.|..+.
T Consensus 169 ~------------------------~~~~~~~Y~asK~a~~~~~~~l~~e~~~~~~~i~v~~v~Pg~v~t~~-------- 216 (286)
T 1xu9_A 169 V------------------------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLIDTET-------- 216 (286)
T ss_dssp S------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBCCHH--------
T ss_pred c------------------------CCCCccHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeecCccCChh--------
Confidence 2 22346899999999999999988775 8999999999986541
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP 367 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~ 367 (479)
......+ .....+++++|+|++++.++...
T Consensus 217 -------------------~~~~~~~---------~~~~~~~~~~~vA~~i~~~~~~~ 246 (286)
T 1xu9_A 217 -------------------AMKAVSG---------IVHMQAAPKEECALEIIKGGALR 246 (286)
T ss_dssp -------------------HHHHSCG---------GGGGGCBCHHHHHHHHHHHHHTT
T ss_pred -------------------HHHhccc---------cccCCCCCHHHHHHHHHHHHhcC
Confidence 1111111 11235689999999999999864
|
| >3icc_A Putative 3-oxoacyl-(acyl carrier protein) reducta; structural genomics, putative 3-oxoacyl-(acyl carrier protei reductase, oxidoreductase; HET: NAP MES; 1.87A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-22 Score=187.02 Aligned_cols=230 Identities=12% Similarity=0.054 Sum_probs=165.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|+++++..... ..+....+.. .+.++.++.+|++
T Consensus 4 ~l~~k~vlITGas~gIG~~~a~~l~~~G~~v~~~~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~D~~ 67 (255)
T 3icc_A 4 MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEE---------------AEETVYEIQS-NGGSAFSIGANLE 67 (255)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCSHH---------------HHHHHHHHHH-TTCEEEEEECCTT
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCchHH---------------HHHHHHHHHh-cCCceEEEecCcC
Confidence 35789999999999999999999999999999875543211 1111222221 2457889999999
Q ss_pred ChHHHHHHhhhc-----------CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHHc--CCcceEEEe
Q 011707 163 DFEFLSESFKSF-----------EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKEF--RQECHLVKL 228 (479)
Q Consensus 163 d~~~~~~~~~~~-----------~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--g~~~~~V~~ 228 (479)
|.++++++++.. ++|+||||||....... ..+.+++..++++|+.|+.++++++... +. .+||++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~-~~iv~i 146 (255)
T 3icc_A 68 SLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDN-SRIINI 146 (255)
T ss_dssp SHHHHHHHHHHHHHHHHHHHSSSCEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEE-EEEEEE
T ss_pred CHHHHHHHHHHHHHHhcccccCCcccEEEECCCCCCCCChhhCCHHHHHHHHhhhchHHHHHHHHHHHhhCCC-CEEEEe
Confidence 998888877642 29999999997643322 2355567888999999999999999764 23 389999
Q ss_pred eccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCch
Q 011707 229 GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 229 SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~ 305 (479)
||...+. +......|+.||++.+.+++.++.++ |+++++++||.|..+.....
T Consensus 147 sS~~~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~ 202 (255)
T 3icc_A 147 SSAATRI------------------------SLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAEL 202 (255)
T ss_dssp CCGGGTS------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCSSSTTT
T ss_pred CChhhcc------------------------CCCCcchhHHhHHHHHHHHHHHHHHHHhcCeEEEEEEEeeecccchhhh
Confidence 9965542 22336899999999999999999885 89999999999988754321
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. .. ..+....... .....+.+++|+|++++.++..... .|+ ++++.++
T Consensus 203 ~---------------~~--~~~~~~~~~~---------~~~~~~~~~~dva~~~~~l~s~~~~~~tG~--~i~vdgG 252 (255)
T 3icc_A 203 L---------------SD--PMMKQYATTI---------SAFNRLGEVEDIADTAAFLASPDSRWVTGQ--LIDVSGG 252 (255)
T ss_dssp T---------------TS--HHHHHHHHHT---------STTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESSS
T ss_pred c---------------cc--HHHHHhhhcc---------CCcCCCCCHHHHHHHHHHHhCcccCCccCC--EEEecCC
Confidence 0 00 0111111111 1234578899999999999865433 455 9999875
|
| >3kzv_A Uncharacterized oxidoreductase YIR035C; cytoplasmic protein, unknown function, structural genomics, MCSG, protein structure initiative; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.7e-22 Score=187.13 Aligned_cols=229 Identities=13% Similarity=-0.002 Sum_probs=160.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+|++|||||+|+||.+++++|+++| +.|++++|.... ++...+..+.++.++.+|++|
T Consensus 2 gk~~lVTGas~GIG~aia~~l~~~g~~~~v~~~~r~~~~--------------------~~~~~~~~~~~~~~~~~Dv~~ 61 (254)
T 3kzv_A 2 GKVILVTGVSRGIGKSIVDVLFSLDKDTVVYGVARSEAP--------------------LKKLKEKYGDRFFYVVGDITE 61 (254)
T ss_dssp CCEEEECSTTSHHHHHHHHHHHHHCSSCEEEEEESCHHH--------------------HHHHHHHHGGGEEEEESCTTS
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCCeEEEEecCCHHH--------------------HHHHHHHhCCceEEEECCCCC
Confidence 6899999999999999999999985 688888775431 111111113578999999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMG 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~ 232 (479)
.++++++++.. ++|+||||||.... +....+++++.+++++|+.|+.++++++ ++.+ + +||++||..
T Consensus 62 ~~~v~~~~~~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~-g-~iv~isS~~ 139 (254)
T 3kzv_A 62 DSVLKQLVNAAVKGHGKIDSLVANAGVLEPVQNVNEIDVNAWKKLYDINFFSIVSLVGIALPELKKTN-G-NVVFVSSDA 139 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEEECCCCCCCTTTTSCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C-EEEEECCSC
T ss_pred HHHHHHHHHHHHHhcCCccEEEECCcccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcC-C-eEEEEcCch
Confidence 99998888754 79999999997543 2233456678889999999999999988 4444 4 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-CCceEEeecCeeecCCCCchhhhHhh
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
.+. +..+...|+.||++.+.+++.++.++ |+++++++||.|..+......
T Consensus 140 ~~~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~i~vn~v~PG~v~t~~~~~~~----- 190 (254)
T 3kzv_A 140 CNM------------------------YFSSWGAYGSSKAALNHFAMTLANEERQVKAIAVAPGIVDTDMQVNIR----- 190 (254)
T ss_dssp CCC------------------------SSCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCCCCSCCCC-----
T ss_pred hcc------------------------CCCCcchHHHHHHHHHHHHHHHHhhccCcEEEEEeCCcccchhHHHhh-----
Confidence 442 22346899999999999999999886 899999999999887643210
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC---CCCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA---QPGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~---~~g~~~~~ni~~~ 381 (479)
....+... -.......... .....+.+++|+|++++.++.... ..|+ ++++.++
T Consensus 191 -~~~~~~~~----~~~~~~~~~~~---------~~~~r~~~p~dva~~v~~L~s~~~~~~itG~--~i~vdg~ 247 (254)
T 3kzv_A 191 -ENVGPSSM----SAEQLKMFRGL---------KENNQLLDSSVPATVYAKLALHGIPDGVNGQ--YLSYNDP 247 (254)
T ss_dssp -CCCCTTTS----CHHHHHHHHHH---------HTTC----CHHHHHHHHHHHHHCCCGGGTTC--EEETTCG
T ss_pred -cccCcccc----CHHHHHHHHHH---------HhcCCcCCcccHHHHHHHHHhhcccCCCCcc--EEEecCc
Confidence 00000000 01111212111 112357889999999999988663 3455 8988774
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-22 Score=186.65 Aligned_cols=234 Identities=13% Similarity=0.016 Sum_probs=166.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+++||.++++.|+++|++|++++|..... +.++...+ .+.++.++.+|++
T Consensus 4 ~L~gKvalVTGas~GIG~aia~~la~~Ga~Vv~~~r~~~~~-----------------~~~~~~~~-~~~~~~~~~~Dv~ 65 (258)
T 4gkb_A 4 NLQDKVVIVTGGASGIGGAISMRLAEERAIPVVFARHAPDG-----------------AFLDALAQ-RQPRATYLPVELQ 65 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCCH-----------------HHHHHHHH-HCTTCEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCcccH-----------------HHHHHHHh-cCCCEEEEEeecC
Confidence 57899999999999999999999999999999999864321 11111111 2457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeeccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTMGEY 234 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~~v~ 234 (479)
|++++++++++. ++|++|||||+......+.+.++|.+++++|+.|++++.+++..+ +.+ +||++||..-.
T Consensus 66 ~~~~v~~~v~~~~~~~G~iDiLVNnAGi~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~G-~IVnisS~~~~ 144 (258)
T 4gkb_A 66 DDAQCRDAVAQTIATFGRLDGLVNNAGVNDGIGLDAGRDAFVASLERNLIHYYAMAHYCVPHLKATRG-AIVNISSKTAV 144 (258)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEECCTHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCCCCCCCCccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCC-eEEEEeehhhc
Confidence 999888777643 799999999986544444566789999999999999998887432 224 99999995433
Q ss_pred -cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 235 -GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 235 -g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. .....|+.||++.+.+.+.++.++ ||+++.|.||.|--|......
T Consensus 145 ~~~-------------------------~~~~~Y~asKaav~~ltr~lA~ela~~gIrVN~V~PG~i~T~~~~~~~---- 195 (258)
T 4gkb_A 145 TGQ-------------------------GNTSGYCASKGAQLALTREWAVALREHGVRVNAVIPAEVMTPLYRNWI---- 195 (258)
T ss_dssp HCC-------------------------SSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCSCC--------
T ss_pred cCC-------------------------CCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCCCCChhHhhhh----
Confidence 22 236789999999999999999885 899999999998766432100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.. ..........+....|+ -+-+...+|+|.+++.++......-.++++++.|+
T Consensus 196 --~~-------~~~~~~~~~~~~~~~pl--------g~R~g~peeiA~~v~fLaS~~a~~iTG~~i~VDGG 249 (258)
T 4gkb_A 196 --AT-------FEDPEAKLAEIAAKVPL--------GRRFTTPDEIADTAVFLLSPRASHTTGEWLFVDGG 249 (258)
T ss_dssp ----------------CHHHHHHTTCTT--------TTSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred --hc-------ccChHHHHHHHHhcCCC--------CCCCcCHHHHHHHHHHHhCchhcCccCCeEEECCC
Confidence 00 00001112222222221 02467789999999999876544322349998775
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-22 Score=192.15 Aligned_cols=232 Identities=13% Similarity=0.096 Sum_probs=161.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|.... ++......+.++.++.+|++
T Consensus 2 ~l~gk~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~--------------------~~~~~~~~~~~~~~~~~Dv~ 61 (281)
T 3zv4_A 2 KLTGEVALITGGASGLGRALVDRFVAEGARVAVLDKSAER--------------------LRELEVAHGGNAVGVVGDVR 61 (281)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HHHHHHHTBTTEEEEECCTT
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCHHH--------------------HHHHHHHcCCcEEEEEcCCC
Confidence 3578999999999999999999999999999999885432 11111122457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccccc------cccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEe
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMI------DRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKL 228 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~------~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~ 228 (479)
|.++++++++.. ++|+||||||......... ..+++.+++++|+.|+.++++++... +.+ +||++
T Consensus 62 ~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~~g-~iv~i 140 (281)
T 3zv4_A 62 SLQDQKRAAERCLAAFGKIDTLIPNAGIWDYSTALADLPEDKIDAAFDDIFHVNVKGYIHAVKACLPALVSSRG-SVVFT 140 (281)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEE
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEECCCcCccccccccCChhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC-eEEEE
Confidence 999988887654 7999999999754322211 12346778999999999999988542 223 89999
Q ss_pred eccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhC--CceEEeecCeeecCCCCchh
Q 011707 229 GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG--IRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 229 SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--l~~~ivRp~~v~Gp~~~~~~ 306 (479)
||...+. +......|+.||++.+.+++.++.+++ ++++++.||.|..+......
T Consensus 141 sS~~~~~------------------------~~~~~~~Y~asKaa~~~l~~~la~e~~~~Irvn~v~PG~v~T~~~~~~~ 196 (281)
T 3zv4_A 141 ISNAGFY------------------------PNGGGPLYTATKHAVVGLVRQMAFELAPHVRVNGVAPGGMNTDLRGPSS 196 (281)
T ss_dssp CCGGGTS------------------------SSSSCHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEECSSCC--CCCTT
T ss_pred ecchhcc------------------------CCCCCchhHHHHHHHHHHHHHHHHHhcCCCEEEEEECCcCcCCcccccc
Confidence 9965442 223467899999999999999999864 99999999999876432110
Q ss_pred hhHhhhcccCCCCcccchHH--HHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhC-CCC--CCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALN--RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN-PAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~-~~~--~g~~~~~ni~~~ 381 (479)
. +.....+. .+...+... .....+...+|+|++++.++.. ... .|+ ++++.++
T Consensus 197 ~-----------~~~~~~~~~~~~~~~~~~~---------~p~~r~~~pedvA~~v~fL~s~~~~~~itG~--~i~vdGG 254 (281)
T 3zv4_A 197 L-----------GLSEQSISSVPLADMLKSV---------LPIGRMPALEEYTGAYVFFATRGDSLPATGA--LLNYDGG 254 (281)
T ss_dssp C-----------C--------CCHHHHHHHT---------CTTSSCCCGGGGSHHHHHHHSTTTSTTCSSC--EEEESSS
T ss_pred c-----------ccccccccchhHHHHHHhc---------CCCCCCCCHHHHHHHHHHhhcccccccccCc--EEEECCC
Confidence 0 00000000 011111111 1234578899999999999983 332 455 9999875
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-22 Score=186.93 Aligned_cols=234 Identities=16% Similarity=0.031 Sum_probs=165.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.++||++|||||+++||.++++.|+++|++|++.+|.... +.+..++ .+.++..+.+|++
T Consensus 26 rL~gKvalVTGas~GIG~aiA~~la~~Ga~V~i~~r~~~~----------------l~~~~~~----~g~~~~~~~~Dv~ 85 (273)
T 4fgs_A 26 RLNAKIAVITGATSGIGLAAAKRFVAEGARVFITGRRKDV----------------LDAAIAE----IGGGAVGIQADSA 85 (273)
T ss_dssp TTTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHH----HCTTCEEEECCTT
T ss_pred hhCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHH----cCCCeEEEEecCC
Confidence 4789999999999999999999999999999999986431 1112222 2457889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeecccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYG 235 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g 235 (479)
|+++++++++.. ++|++|||||...... ...++++|++++++|+.|++++.+++...- ...+||++||.....
T Consensus 86 ~~~~v~~~~~~~~~~~G~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInisS~~~~~ 165 (273)
T 4fgs_A 86 NLAELDRLYEKVKAEAGRIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTGSTAGST 165 (273)
T ss_dssp CHHHHHHHHHHHHHHHSCEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEECCGGGGS
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEeehhhcc
Confidence 999988887653 6999999999865433 344777899999999999999999886531 123899999854331
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
+......|+.||++...+.+.++.++ ||+++.|.||.|.-|......
T Consensus 166 ------------------------~~~~~~~Y~asKaav~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~~------ 215 (273)
T 4fgs_A 166 ------------------------GTPAFSVYAASKAALRSFARNWILDLKDRGIRINTLSPGPTETTGLVELA------ 215 (273)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSCEEEEEEEECSBCC-------------
T ss_pred ------------------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCCChhHHHhh------
Confidence 22236789999999999999999985 799999999998766422100
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
+.....-..+...+....| ..-+...+|+|.+++.++......-.++++.+.|+
T Consensus 216 ------~~~~~~~~~~~~~~~~~~P---------lgR~g~peeiA~~v~FLaSd~a~~iTG~~i~VDGG 269 (273)
T 4fgs_A 216 ------GKDPVQQQGLLNALAAQVP---------MGRVGRAEEVAAAALFLASDDSSFVTGAELFVDGG 269 (273)
T ss_dssp --------CHHHHHHHHHHHHHHST---------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTT
T ss_pred ------ccCchhhHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCchhcCccCCeEeECcC
Confidence 0000001122333332222 12356789999999999976544322338888765
|
| >1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=191.69 Aligned_cols=232 Identities=10% Similarity=-0.006 Sum_probs=149.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+||||||+|+||.+++++|+++|++|++++|..... . . . +.+|++|.+
T Consensus 1 mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~-----------------------~----~--~-~~~Dl~~~~ 50 (257)
T 1fjh_A 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAEV-----------------------I----A--D-LSTAEGRKQ 50 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSSE-----------------------E----C--C-TTSHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCchhh-----------------------c----c--c-cccCCCCHH
Confidence 46899999999999999999999999999998854310 0 0 1 578999999
Q ss_pred HHHHHhhhc--CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccccccCCCC
Q 011707 166 FLSESFKSF--EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGEYGTPNI 239 (479)
Q Consensus 166 ~~~~~~~~~--~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v~g~~~~ 239 (479)
+++++++.. ++|+||||||..... ..+..++++|+.|+.++++++.. .+.+ +||++||...+..+..
T Consensus 51 ~v~~~~~~~~~~id~lv~~Ag~~~~~------~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~g-~iv~isS~~~~~~~~~ 123 (257)
T 1fjh_A 51 AIADVLAKCSKGMDGLVLCAGLGPQT------KVLGNVVSVNYFGATELMDAFLPALKKGHQP-AAVVISSVASAHLAFD 123 (257)
T ss_dssp HHHHHHTTCTTCCSEEEECCCCCTTC------SSHHHHHHHHTHHHHHHHHHHHHHHHTSSSC-EEEEECCGGGGSSCGG
T ss_pred HHHHHHHHhCCCCCEEEECCCCCCCc------ccHHHHHHHhhHHHHHHHHHHHHHHhhcCCc-EEEEECChhhhccccc
Confidence 999999754 679999999975411 12567899999999999998863 3445 9999999877632211
Q ss_pred -CCcCCceeecCCCCC---CCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhhh
Q 011707 240 -DIEEGYITINHNGRT---DTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 240 -~~~e~~~~~~~~~~~---~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
+..+..+........ .....+..+...|+.||++.+.+++.++.+ .|+++++++||.|.++......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~~~------ 197 (257)
T 1fjh_A 124 KNPLALALEAGEEAKARAIVEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAGL------ 197 (257)
T ss_dssp GCTTHHHHHHTCHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC----------------
T ss_pred cchhhhhhcccchhhhhhhhhcccCCCCccHHHHHHHHHHHHHHHHHHHHhhcCeEEEEEeeCCCCCccchhhc------
Confidence 000000000000000 000012224678999999999999998887 4899999999999887532100
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
........... + ......+.+++|+|++++.++..+.. .|+ ++++.++
T Consensus 198 ------------~~~~~~~~~~~-----~--~~~~~~~~~~~dvA~~~~~l~~~~~~~~tG~--~~~vdgG 247 (257)
T 1fjh_A 198 ------------QDPRYGESIAK-----F--VPPMGRRAEPSEMASVIAFLMSPAASYVHGA--QIVIDGG 247 (257)
T ss_dssp ----------------------------C--CCSTTSCCCTHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred ------------cchhHHHHHHh-----c--ccccCCCCCHHHHHHHHHHHhCchhcCCcCC--EEEECCC
Confidence 00000000000 0 11223578999999999999876532 455 8998875
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.1e-22 Score=185.64 Aligned_cols=217 Identities=14% Similarity=0.075 Sum_probs=158.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc-
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI- 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl- 161 (479)
.+++|+||||||+|+||.+++++|+++|++|++++|..... .+..+.+......++.++.+|+
T Consensus 11 ~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~~~~~~~~~~~d~d 74 (247)
T 3i1j_A 11 LLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASL----------------AEVSDQIKSAGQPQPLIIALNLE 74 (247)
T ss_dssp TTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHTTSCCCEEEECCTT
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHH----------------HHHHHHHHhcCCCCceEEEeccc
Confidence 46789999999999999999999999999999999865421 1222223223335677788777
Q ss_pred -CChHHHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEee
Q 011707 162 -CDFEFLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLG 229 (479)
Q Consensus 162 -~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~S 229 (479)
+|.+++.++++.. ++|+||||||..... ....+.+++..++++|+.|+.++++++. +.+.+ +||++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~-~iv~is 153 (247)
T 3i1j_A 75 NATAQQYRELAARVEHEFGRLDGLLHNASIIGPRTPLEQLPDEDFMQVMHVNVNATFMLTRALLPLLKRSEDA-SIAFTS 153 (247)
T ss_dssp TCCHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSE-EEEEEC
T ss_pred cCCHHHHHHHHHHHHHhCCCCCEEEECCccCCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC-eEEEEc
Confidence 8998888877643 799999999975432 2333566788899999999999999884 33444 999999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh----CCceEEeecCeeecCCCCch
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW----GIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~----gl~~~ivRp~~v~Gp~~~~~ 305 (479)
|...+. +..+...|+.+|++.+.+++.++.++ |++++++.||.|..+.
T Consensus 154 S~~~~~------------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~~~i~v~~v~PG~v~t~~---- 205 (247)
T 3i1j_A 154 SSVGRK------------------------GRANWGAYGVSKFATEGLMQTLADELEGVTAVRANSINPGATRTGM---- 205 (247)
T ss_dssp CGGGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTSSEEEEEEECCCCSSHH----
T ss_pred chhhcC------------------------CCCCcchhHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCcccCcc----
Confidence 965432 22346899999999999999999884 6899999998885541
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEe
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQ 378 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni 378 (479)
....... .....+...+|++++++.++..... .|+ ++++
T Consensus 206 -----------------------~~~~~~~---------~~~~~~~~p~dva~~~~~l~s~~~~~itG~--~i~~ 246 (247)
T 3i1j_A 206 -----------------------RAQAYPD---------ENPLNNPAPEDIMPVYLYLMGPDSTGINGQ--ALNA 246 (247)
T ss_dssp -----------------------HHHHSTT---------SCGGGSCCGGGGTHHHHHHHSGGGTTCCSC--EEEC
T ss_pred -----------------------chhcccc---------cCccCCCCHHHHHHHHHHHhCchhccccCe--eecC
Confidence 1111111 1123467899999999999975433 344 6664
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-22 Score=184.25 Aligned_cols=203 Identities=16% Similarity=0.135 Sum_probs=148.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
||+||||||+|+||.+++++|+++|++|++++|.... ++......+.++.++.+|++|.+
T Consensus 1 Mk~vlVTGas~gIG~~~a~~l~~~G~~V~~~~r~~~~--------------------~~~~~~~~~~~~~~~~~D~~~~~ 60 (230)
T 3guy_A 1 MSLIVITGASSGLGAELAKLYDAEGKATYLTGRSESK--------------------LSTVTNCLSNNVGYRARDLASHQ 60 (230)
T ss_dssp --CEEEESTTSHHHHHHHHHHHHTTCCEEEEESCHHH--------------------HHHHHHTCSSCCCEEECCTTCHH
T ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHH--------------------HHHHHHHHhhccCeEeecCCCHH
Confidence 4789999999999999999999999999999986432 11111112457889999999999
Q ss_pred HHHHHhhhc--CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcC--CcceEEEeeccccccCCCCC
Q 011707 166 FLSESFKSF--EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFR--QECHLVKLGTMGEYGTPNID 240 (479)
Q Consensus 166 ~~~~~~~~~--~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g--~~~~~V~~SS~~v~g~~~~~ 240 (479)
+++++++.. .+|+||||||...... ...+++++.+++++|+.|+.++++++.... .+.+||++||...+.
T Consensus 61 ~v~~~~~~~~~~~d~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~~iv~isS~~~~~----- 135 (230)
T 3guy_A 61 EVEQLFEQLDSIPSTVVHSAGSGYFGLLQEQDPEQIQTLIENNLSSAINVLRELVKRYKDQPVNVVMIMSTAAQQ----- 135 (230)
T ss_dssp HHHHHHHSCSSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEEEECCGGGTS-----
T ss_pred HHHHHHHHHhhcCCEEEEeCCcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeecccCC-----
Confidence 999999853 2599999999765433 233566788899999999999999886542 112899999976552
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhcccCC
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCNRLDY 317 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~ 317 (479)
+......|+.||++.+.+++.++.++ |++++.++||.|..+...
T Consensus 136 -------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~-------------- 182 (230)
T 3guy_A 136 -------------------PKAQESTYCAVKWAVKGLIESVRLELKGKPMKIIAVYPGGMATEFWE-------------- 182 (230)
T ss_dssp -------------------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEEEECCC--------------------
T ss_pred -------------------CCCCCchhHHHHHHHHHHHHHHHHHHHhcCeEEEEEECCcccChHHH--------------
Confidence 22346899999999999999999986 799999999998765321
Q ss_pred CCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC
Q 011707 318 DGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA 368 (479)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~ 368 (479)
... . ......+++++|+|++++.++..+.
T Consensus 183 -------------~~~--~-------~~~~~~~~~~~dvA~~i~~l~~~~~ 211 (230)
T 3guy_A 183 -------------TSG--K-------SLDTSSFMSAEDAALMIHGALANIG 211 (230)
T ss_dssp --------------------------------CCCHHHHHHHHHHHCCEET
T ss_pred -------------hcC--C-------CCCcccCCCHHHHHHHHHHHHhCcC
Confidence 000 0 0123467899999999999987544
|
| >3kvo_A Hydroxysteroid dehydrogenase-like protein 2; HSDL2, human hydroxysteroid dehydrogenase like 2, SDHL2, STR genomics, structural genomics consortium; HET: NAP; 2.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-21 Score=189.80 Aligned_cols=217 Identities=15% Similarity=0.045 Sum_probs=157.5
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..+++|+||||||+|+||.+++++|+++|++|++++|........ .. .+.+..+.+.. .+.++.++.+|+
T Consensus 41 ~~l~gk~vlVTGas~GIG~aia~~La~~Ga~Vvl~~r~~~~~~~l------~~---~l~~~~~~~~~-~g~~~~~~~~Dv 110 (346)
T 3kvo_A 41 GRLAGCTVFITGASRGIGKAIALKAAKDGANIVIAAKTAQPHPKL------LG---TIYTAAEEIEA-VGGKALPCIVDV 110 (346)
T ss_dssp STTTTCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESCCSCCSSS------CC---CHHHHHHHHHH-TTCEEEEEECCT
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEEECChhhhhhh------HH---HHHHHHHHHHh-cCCeEEEEEccC
Confidence 356799999999999999999999999999999999865421110 00 11112222222 245789999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
+|+++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++.. .+.+ +||++||.
T Consensus 111 ~d~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~g-~IV~iSS~ 189 (346)
T 3kvo_A 111 RDEQQISAAVEKAIKKFGGIDILVNNASAISLTNTLDTPTKRLDLMMNVNTRGTYLASKACIPYLKKSKVA-HILNISPP 189 (346)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSC-EEEEECCC
T ss_pred CCHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCC-EEEEECCH
Confidence 9999998888754 7999999999765432 2335567788999999999999999854 3444 99999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCCCCchhhhH
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
..+... +......|+.||++.+.+++.++.++ |++++++.||.+...
T Consensus 190 ~~~~~~----------------------~~~~~~~Y~aSKaal~~l~~~la~e~~~gIrvn~v~PG~~i~T--------- 238 (346)
T 3kvo_A 190 LNLNPV----------------------WFKQHCAYTIAKYGMSMYVLGMAEEFKGEIAVNALWPKTAIHT--------- 238 (346)
T ss_dssp CCCCGG----------------------GTSSSHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEECSBCBCC---------
T ss_pred HHcCCC----------------------CCCCchHHHHHHHHHHHHHHHHHHHhcCCcEEEEEeCCCcccc---------
Confidence 543210 12346899999999999999999985 799999999864332
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN 366 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~ 366 (479)
.+...+ .+. .....+..++|+|++++.++..
T Consensus 239 -----------------~~~~~~-~~~--------~~~~r~~~pedvA~~v~~L~s~ 269 (346)
T 3kvo_A 239 -----------------AAMDML-GGP--------GIESQCRKVDIIADAAYSIFQK 269 (346)
T ss_dssp -----------------HHHHHH-CC----------CGGGCBCTHHHHHHHHHHHTS
T ss_pred -----------------HHHHhh-ccc--------cccccCCCHHHHHHHHHHHHhc
Confidence 112221 111 1233567899999999999987
|
| >1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=5.2e-22 Score=185.91 Aligned_cols=210 Identities=11% Similarity=0.009 Sum_probs=155.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++|+||||||+|+||.+++++|+++|++|++++|..... .....++.+|++|
T Consensus 5 ~~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~---------------------------~~~~~~~~~D~~~ 57 (241)
T 1dhr_A 5 GEARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE---------------------------ASASVIVKMTDSF 57 (241)
T ss_dssp -CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT---------------------------SSEEEECCCCSCH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCEEEEEeCChhhc---------------------------cCCcEEEEcCCCC
Confidence 3578999999999999999999999999999999854310 0135677899999
Q ss_pred hHHHHHHhhh-------cCCCEEEEcccccCccc--ccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeecccc
Q 011707 164 FEFLSESFKS-------FEPDAVVHFGEQRSAPY--SMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~-------~~~D~Vih~A~~~~~~~--~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v 233 (479)
+++++++++. .++|+||||||...... ...+.+++.+.+++|+.|+.++++++...- .+.+||++||...
T Consensus 58 ~~~v~~~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~g~iv~isS~~~ 137 (241)
T 1dhr_A 58 TEQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAA 137 (241)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHhCCCCCCEEEEcccccCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCEEEEECCHHH
Confidence 9988887764 27999999999754322 223455678889999999999999997641 1239999999765
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-----CCceEEeecCeeecCCCCchhhh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-----GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
+. +..+...|+.+|++.+.+++.++.++ |+++++++||.|-.+.
T Consensus 138 ~~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~~~gi~v~~v~PG~v~T~~------- 186 (241)
T 1dhr_A 138 LD------------------------GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM------- 186 (241)
T ss_dssp GS------------------------CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH-------
T ss_pred cc------------------------CCCCchHHHHHHHHHHHHHHHHHHHhccCCCCeEEEEEecCcccCcc-------
Confidence 53 22346889999999999999998764 5999999999886541
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
....... .....+++.+|+|++++.++......-.++++++.+
T Consensus 187 --------------------~~~~~~~---------~~~~~~~~~~~vA~~v~~l~~~~~~~~~G~~~~v~g 229 (241)
T 1dhr_A 187 --------------------NRKSMPE---------ADFSSWTPLEFLVETFHDWITGNKRPNSGSLIQVVT 229 (241)
T ss_dssp --------------------HHHHSTT---------SCGGGSEEHHHHHHHHHHHHTTTTCCCTTCEEEEEE
T ss_pred --------------------ccccCcc---------hhhccCCCHHHHHHHHHHHhcCCCcCccceEEEEeC
Confidence 1111111 112346788999999999997654432223888765
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=187.14 Aligned_cols=226 Identities=15% Similarity=0.044 Sum_probs=158.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|+||.+++++|+++|++|++++|......... . .+.+..+.... .+.++.++.+|++
T Consensus 3 ~l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~------~---~~~~~~~~~~~-~~~~~~~~~~Dv~ 72 (274)
T 3e03_A 3 TLSGKTLFITGASRGIGLAIALRAARDGANVAIAAKSAVANPKLP------G---TIHSAAAAVNA-AGGQGLALKCDIR 72 (274)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCSCCTTSC------C---CHHHHHHHHHH-HTSEEEEEECCTT
T ss_pred CCCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeccchhhhhhH------H---HHHHHHHHHHh-cCCeEEEEeCCCC
Confidence 467899999999999999999999999999999998654211100 0 01111111111 2457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|.++++++++.. ++|+||||||...... ...+.+++..++++|+.|+.++++++.. .+.+ +||++||..
T Consensus 73 ~~~~v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~ 151 (274)
T 3e03_A 73 EEDQVRAAVAATVDTFGGIDILVNNASAIWLRGTLDTPMKRFDLMQQVNARGSFVCAQACLPHLLQAPNP-HILTLAPPP 151 (274)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGSCHHHHHHHHHHTHHHHHHHHHHHHHHHTTSSSC-EEEECCCCC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCcccCCCcccCCHHHHHHHHhHhhHhHHHHHHHHHHHHHhcCCc-eEEEECChH
Confidence 999998887754 7999999999865433 2335567888999999999999998854 3444 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+... +......|+.||++.+.+++.++.++ |++++++.||.+....
T Consensus 152 ~~~~~----------------------~~~~~~~Y~asKaal~~l~~~la~e~~~~gI~vn~v~PG~~v~T~-------- 201 (274)
T 3e03_A 152 SLNPA----------------------WWGAHTGYTLAKMGMSLVTLGLAAEFGPQGVAINALWPRTVIATD-------- 201 (274)
T ss_dssp CCCHH----------------------HHHHCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECSBCBCC---------
T ss_pred hcCCC----------------------CCCCCchHHHHHHHHHHHHHHHHHHhhhcCEEEEEEECCcccccc--------
Confidence 43210 01225789999999999999999885 7999999998543221
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEE
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFN 377 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~n 377 (479)
+ . ....+ .....+...+|+|++++.++......-.+++++
T Consensus 202 ---------------~---~-~~~~~---------~~~~~~~~pedvA~~v~~l~s~~~~~itG~~i~ 241 (274)
T 3e03_A 202 ---------------A---I-NMLPG---------VDAAACRRPEIMADAAHAVLTREAAGFHGQFLI 241 (274)
T ss_dssp -------------------------C---------CCGGGSBCTHHHHHHHHHHHTSCCTTCCSCEEE
T ss_pred ---------------h---h-hhccc---------ccccccCCHHHHHHHHHHHhCccccccCCeEEE
Confidence 0 0 01111 112346789999999999998655432223553
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=186.93 Aligned_cols=223 Identities=13% Similarity=0.057 Sum_probs=155.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHh-CCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSN-KGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~-~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++|+||||||+|+||.+++++|++ +|++|++++|..... .+..+.+... +.++.++.+|++|
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~~V~~~~r~~~~~----------------~~~~~~l~~~-~~~~~~~~~Dl~~ 65 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRG----------------QAAVQQLQAE-GLSPRFHQLDIDD 65 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHH----------------HHHHHHHHHT-TCCCEEEECCTTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCCeEEEEeCChHHH----------------HHHHHHHHhc-CCeeEEEECCCCC
Confidence 578999999999999999999999 999999999864321 1111122111 3578899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccccccc-ccccchhhhhhHHHHHHHHHHHHHcCC-cceEEEeeccccccC
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYSMID-RSRAVFTQHNNVIGTLNVLFAMKEFRQ-ECHLVKLGTMGEYGT 236 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~-~~~~~~~~~~Nv~g~~~ll~~a~~~g~-~~~~V~~SS~~v~g~ 236 (479)
.++++++++.. ++|+||||||.......... .+++..++++|+.|+.++++++..... ..+||++||...+..
T Consensus 66 ~~~~~~~~~~~~~~~g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~sS~~~~~~ 145 (276)
T 1wma_A 66 LQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRA 145 (276)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEECChhhhcc
Confidence 99998888754 79999999997643322212 345678899999999999999987521 239999999655521
Q ss_pred -CC-----------CCCcCCceeecC-----CCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH-------hCCceEEe
Q 011707 237 -PN-----------IDIEEGYITINH-----NGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA-------WGIRATDL 292 (479)
Q Consensus 237 -~~-----------~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-------~gl~~~iv 292 (479)
.. .++.|+.+.... .......+.+..|...|+.||++.|.+++.++.+ .|++++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~a~~~~~~~la~~~~~~~~~~~i~v~~v 225 (276)
T 1wma_A 146 LKSCSPELQQKFRSETITEEELVGLMNKFVEDTKKGVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILLNAC 225 (276)
T ss_dssp HHTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHTTCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEEEEE
T ss_pred cccCChhHHhhccccccchhhhhhhhhhhhhhhcccccccCCCccchhHHHHHHHHHHHHHHHHHhhcccCCCceEEEEe
Confidence 10 011221100000 0000000112234589999999999999998877 48999999
Q ss_pred ecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC
Q 011707 293 NQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP 367 (479)
Q Consensus 293 Rp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~ 367 (479)
+||.|.++... . ..+.+++|+|++++.++..+
T Consensus 226 ~PG~v~t~~~~-------------------------------~------------~~~~~~~~~a~~~~~l~~~~ 257 (276)
T 1wma_A 226 CPGWVRTDMAG-------------------------------P------------KATKSPEEGAETPVYLALLP 257 (276)
T ss_dssp ECCSBCSTTTC-------------------------------T------------TCSBCHHHHTHHHHHHHSCC
T ss_pred cCCccccCcCC-------------------------------c------------cccCChhHhhhhHhhhhcCc
Confidence 99999876311 0 13689999999999999855
|
| >1e7w_A Pteridine reductase; dihydrofolate reductase, shortchain dehydrogenase, methotrexate resistance, oxidoreductase; HET: NDP MTX; 1.75A {Leishmania major} SCOP: c.2.1.2 PDB: 1w0c_A* 1e92_A* 2bf7_A* 2bfa_A* 2bfm_A* 2bfo_A* 2bfp_A* 2p8k_A* 3h4v_A* 2xox_A 1p33_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-21 Score=187.04 Aligned_cols=225 Identities=12% Similarity=0.046 Sum_probs=161.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEe-cccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD-SLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~d-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+++|++|||||+|+||.+++++|+++|++|++++ |..... .+..+.+....+.++.++.+|++
T Consensus 7 l~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~Dl~ 70 (291)
T 1e7w_A 7 PTVPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEA----------------NALSATLNARRPNSAITVQADLS 70 (291)
T ss_dssp -CCCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH----------------HHHHHHHHHHSTTCEEEEECCCS
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEcCCCHHHH----------------HHHHHHHhhhcCCeeEEEEeecC
Confidence 5689999999999999999999999999999998 654311 11111221112357899999999
Q ss_pred ChH-----------------HHHHHhhhc-----CCCEEEEcccccCccc-cccc--------------ccccchhhhhh
Q 011707 163 DFE-----------------FLSESFKSF-----EPDAVVHFGEQRSAPY-SMID--------------RSRAVFTQHNN 205 (479)
Q Consensus 163 d~~-----------------~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~--------------~~~~~~~~~~N 205 (479)
|.+ +++++++.. ++|+||||||...... ...+ ++++..++++|
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N 150 (291)
T 1e7w_A 71 NVATAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSN 150 (291)
T ss_dssp SSCBCCCC----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHH
T ss_pred CcccccccccccccccchHHHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhcCccccccccccccccHHHHHHHHHHH
Confidence 998 888887754 7999999999764322 1223 55678899999
Q ss_pred HHHHHHHHHHHHH----cC------CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHH
Q 011707 206 VIGTLNVLFAMKE----FR------QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDS 275 (479)
Q Consensus 206 v~g~~~ll~~a~~----~g------~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E 275 (479)
+.|+.++++++.. .+ .+ +||++||...+. +......|+.||++.+
T Consensus 151 ~~g~~~l~~~~~~~m~~~~~~~~~~~g-~Iv~isS~~~~~------------------------~~~~~~~Y~asKaa~~ 205 (291)
T 1e7w_A 151 AIAPYFLIKAFAHRVAGTPAKHRGTNY-SIINMVDAMTNQ------------------------PLLGYTIYTMAKGALE 205 (291)
T ss_dssp THHHHHHHHHHHHHHHTSCGGGSCSCE-EEEEECCTTTTS------------------------CCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCCCCc-EEEEEechhhcC------------------------CCCCCchhHHHHHHHH
Confidence 9999999998864 23 34 999999965442 2234689999999999
Q ss_pred HHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCcee-ccc
Q 011707 276 HNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTR-GYL 351 (479)
Q Consensus 276 ~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 351 (479)
.+++.++.++ |+++++++||.|..+. . . . ..+...+....+ .. .+.
T Consensus 206 ~l~~~la~e~~~~gI~vn~v~PG~v~T~~-~--~---------------~---~~~~~~~~~~~p---------~~~r~~ 255 (291)
T 1e7w_A 206 GLTRSAALELAPLQIRVNGVGPGLSVLVD-D--M---------------P---PAVWEGHRSKVP---------LYQRDS 255 (291)
T ss_dssp HHHHHHHHHHGGGTEEEEEEEESSBCCGG-G--S---------------C---HHHHHHHHTTCT---------TTTSCB
T ss_pred HHHHHHHHHHHhcCeEEEEEeeCCccCCc-c--C---------------C---HHHHHHHHhhCC---------CCCCCC
Confidence 9999999884 8999999999986553 1 0 0 111222222211 11 367
Q ss_pred cHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 352 DIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 352 ~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
..+|+|++++.++..... .|+ ++++.++
T Consensus 256 ~pedvA~~v~~l~s~~~~~itG~--~i~vdGG 285 (291)
T 1e7w_A 256 SAAEVSDVVIFLCSSKAKYITGT--CVKVDGG 285 (291)
T ss_dssp CHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred CHHHHHHHHHHHhCCcccCccCc--EEEECCC
Confidence 899999999999975433 454 8888875
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-21 Score=185.37 Aligned_cols=173 Identities=16% Similarity=0.138 Sum_probs=131.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+... .++.++.+|++|.++
T Consensus 22 k~vlVTGas~gIG~aia~~La~~G~~V~~~~r~~~~~----------------~~~~~~~~~~--~~~~~~~~Dv~d~~~ 83 (272)
T 2nwq_A 22 STLFITGATSGFGEACARRFAEAGWSLVLTGRREERL----------------QALAGELSAK--TRVLPLTLDVRDRAA 83 (272)
T ss_dssp CEEEESSTTTSSHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHTTT--SCEEEEECCTTCHHH
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHhhcC--CcEEEEEcCCCCHHH
Confidence 8999999999999999999999999999998864311 1111112111 368899999999999
Q ss_pred HHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccccc
Q 011707 167 LSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 167 ~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~g 235 (479)
++++++.. ++|+||||||.... +....+.+++..++++|+.|+.++++++. +.+.+.+||++||...+.
T Consensus 84 v~~~~~~~~~~~g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~~~g~~IV~isS~~~~~ 163 (272)
T 2nwq_A 84 MSAAVDNLPEEFATLRGLINNAGLALGTDPAQSCDLDDWDTMVDTNIKGLLYSTRLLLPRLIAHGAGASIVNLGSVAGKW 163 (272)
T ss_dssp HHHHHHTCCGGGSSCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGTS
T ss_pred HHHHHHHHHHHhCCCCEEEECCCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCchhcc
Confidence 99998753 57999999997542 22334556788899999999988887774 333222899999975542
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCC
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVR 301 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~ 301 (479)
+......|+.+|++.+.+++.++.++ |+++++++||.|..+.
T Consensus 164 ------------------------~~~~~~~Y~asKaa~~~l~~~la~el~~~gIrvn~v~PG~v~T~~ 208 (272)
T 2nwq_A 164 ------------------------PYPGSHVYGGTKAFVEQFSLNLRCDLQGTGVRVTNLEPGLCESEF 208 (272)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEECSBC---
T ss_pred ------------------------CCCCCchHHHHHHHHHHHHHHHHHHhCccCeEEEEEEcCCCcCcc
Confidence 22336789999999999999998764 7999999999998774
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-21 Score=179.81 Aligned_cols=231 Identities=15% Similarity=0.137 Sum_probs=166.2
Q ss_pred CCCCcEEEEEcCCc--hhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDG--YCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG--~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.+++|++|||||+| +||.+++++|+++|++|++.+|.... +.+..+...+..+.++.++.+|
T Consensus 3 ~l~gK~alVTGaa~~~GIG~aiA~~la~~Ga~Vvi~~r~~~~----------------~~~~~~~~~~~~~~~~~~~~~D 66 (256)
T 4fs3_A 3 NLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERS----------------RKELEKLLEQLNQPEAHLYQID 66 (256)
T ss_dssp CCTTCEEEEECCCSTTCHHHHHHHHHHHTTCEEEEEESSGGG----------------HHHHHHHHGGGTCSSCEEEECC
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHhcCCCcEEEEEcc
Confidence 46899999999876 99999999999999999999986542 1222333344445678999999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCccc-----ccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEee
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-----SMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLG 229 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-----~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~S 229 (479)
++|+++++++++.. ++|++|||||...... .....+++...+++|+.++..+.+++...- .+.+||++|
T Consensus 67 v~~~~~v~~~~~~~~~~~G~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~IVnis 146 (256)
T 4fs3_A 67 VQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKLMPEGGSIVATT 146 (256)
T ss_dssp TTCHHHHHHHHHHHHHHHCCCSEEEECCCCCCGGGGTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCTTCEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEeccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCCEEEEEe
Confidence 99999888877643 6999999999754321 223445567788999999999988886532 224899999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|..-.. +......|+.||++.+.+.+.++.++ ||+++.|.||.|--+.....
T Consensus 147 S~~~~~------------------------~~~~~~~Y~asKaal~~ltr~lA~Ela~~gIrVN~V~PG~i~T~~~~~~- 201 (256)
T 4fs3_A 147 YLGGEF------------------------AVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGV- 201 (256)
T ss_dssp CGGGTS------------------------CCTTTHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCCCSGGGTTC-
T ss_pred cccccc------------------------CcccchhhHHHHHHHHHHHHHHHHHhCccCeEEEEEecCCCCChhhhhc-
Confidence 954221 22346899999999999999999985 89999999998865532210
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.....+...+....|+ .-+...+|+|.+++.++..... .|+ ++.+.++
T Consensus 202 ----------------~~~~~~~~~~~~~~Pl---------~R~g~peevA~~v~fL~Sd~a~~iTG~--~i~VDGG 251 (256)
T 4fs3_A 202 ----------------GGFNTILKEIKERAPL---------KRNVDQVEVGKTAAYLLSDLSSGVTGE--NIHVDSG 251 (256)
T ss_dssp ----------------TTHHHHHHHHHHHSTT---------SSCCCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ----------------cCCHHHHHHHHhcCCC---------CCCcCHHHHHHHHHHHhCchhcCccCC--EEEECcC
Confidence 0112333333333221 2356789999999999875443 455 8888765
|
| >4h15_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, nysgrc; HET: MSE; 1.45A {Sinorhizobium meliloti} PDB: 4h16_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3.9e-21 Score=181.05 Aligned_cols=234 Identities=14% Similarity=0.071 Sum_probs=161.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.++||++|||||+++||.+++++|+++|++|++.+|..... .....++.+|++
T Consensus 8 ~L~GK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~~---------------------------~~~~~~~~~Dv~ 60 (261)
T 4h15_A 8 NLRGKRALITAGTKGAGAATVSLFLELGAQVLTTARARPEG---------------------------LPEELFVEADLT 60 (261)
T ss_dssp CCTTCEEEESCCSSHHHHHHHHHHHHTTCEEEEEESSCCTT---------------------------SCTTTEEECCTT
T ss_pred CCCCCEEEEeccCcHHHHHHHHHHHHcCCEEEEEECCchhC---------------------------CCcEEEEEcCCC
Confidence 57899999999999999999999999999999998853210 123457899999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc---ccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeec
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA---PYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~---~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS 230 (479)
|+++++++++.. ++|++|||||.... +....++++|.+++++|+.|+.++.+++. +.+.+ +||++||
T Consensus 61 ~~~~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G-~Iv~isS 139 (261)
T 4h15_A 61 TKEGCAIVAEATRQRLGGVDVIVHMLGGSSAAGGGFSALSDDDWYNELSLNLFAAVRLDRQLVPDMVARGSG-VVVHVTS 139 (261)
T ss_dssp SHHHHHHHHHHHHHHTSSCSEEEECCCCCCCCSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECC
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCccCCCCcccCCHHHHHHHHHHHhHHHHHHHHhhchhhhhcCCc-eEEEEEe
Confidence 999888877643 69999999997543 22344667889999999999999988774 34555 9999999
Q ss_pred cccc-cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 231 MGEY-GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 231 ~~v~-g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
.... +.+ .....|+.||++.+.+.+.++.++ |++++.|.||.|--|.....
T Consensus 140 ~~~~~~~~------------------------~~~~~Y~asKaal~~lt~~lA~Ela~~gIrVN~V~PG~i~T~~~~~~- 194 (261)
T 4h15_A 140 IQRVLPLP------------------------ESTTAYAAAKAALSTYSKAMSKEVSPKGVRVVRVSPGWIETEASVRL- 194 (261)
T ss_dssp GGGTSCCT------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCHHHHHH-
T ss_pred hhhccCCC------------------------CccHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEeCCCcCCcchhhh-
Confidence 5432 111 235789999999999999999984 89999999998865421100
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQ 382 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~ 382 (479)
...+... .+........++.......| ..-+...+|+|++++.++......-.++++++.|+.
T Consensus 195 -~~~~~~~---~~~~~~~~~~~~~~~~~~~P---------lgR~g~peevA~~v~fLaS~~a~~itG~~i~VDGG~ 257 (261)
T 4h15_A 195 -AERLAKQ---AGTDLEGGKKIIMDGLGGIP---------LGRPAKPEEVANLIAFLASDRAASITGAEYTIDGGT 257 (261)
T ss_dssp -HHHHHHH---TTCCHHHHHHHHHHHTTCCT---------TSSCBCHHHHHHHHHHHHSGGGTTCCSCEEEESTTC
T ss_pred -hHHHHHh---hccchhhHHHHHHHHhcCCC---------CCCCcCHHHHHHHHHHHhCchhcCccCcEEEECCcC
Confidence 0000000 00000001122222222222 234678999999999998654442222399998764
|
| >2h7i_A Enoyl-[acyl-carrier-protein] reductase [NADH]; oxidoreductase, INHA, enoyl acyl carrier reductase, pyrrolid carboxamide; HET: NAD 566; 1.62A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1p44_A* 1p45_A* 2b35_A* 2b36_A* 2b37_A* 2aq8_A* 2h7l_A* 2h7m_A* 2h7n_A* 2h7p_A* 2nsd_A* 2pr2_A* 2x22_A* 2x23_A* 3fne_A* 3fnf_A* 3fng_A* 3fnh_A* 3oew_A* 2aqh_A* ... | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-21 Score=185.76 Aligned_cols=239 Identities=13% Similarity=0.061 Sum_probs=162.3
Q ss_pred CCCcEEEEEcC--CchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGG--DGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGa--tG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|+|||||| +|+||.+++++|+++|++|++++|..... .+...+..+.++.++.+|+
T Consensus 5 l~~k~vlVTGa~~s~gIG~aia~~l~~~G~~V~~~~r~~~~~-------------------~~~~~~~~~~~~~~~~~Dv 65 (269)
T 2h7i_A 5 LDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLRL-------------------IQRITDRLPAKAPLLELDV 65 (269)
T ss_dssp TTTCEEEECCCSSTTSHHHHHHHHHHHTTCEEEEEECSCHHH-------------------HHHHHTTSSSCCCEEECCT
T ss_pred cCCCEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecChHHH-------------------HHHHHHhcCCCceEEEccC
Confidence 56899999999 99999999999999999999998854310 1111111134688999999
Q ss_pred CChHHHHHHhhhc--------CCCEEEEcccccCc------ccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEE
Q 011707 162 CDFEFLSESFKSF--------EPDAVVHFGEQRSA------PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLV 226 (479)
Q Consensus 162 ~d~~~~~~~~~~~--------~~D~Vih~A~~~~~------~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V 226 (479)
+|+++++++++.. ++|+||||||.... +....+.+++..++++|+.|+.++++++...- ...+||
T Consensus 66 ~~~~~v~~~~~~~~~~~g~~~~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv 145 (269)
T 2h7i_A 66 QNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSIV 145 (269)
T ss_dssp TCHHHHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCCCceEEEECCccCccccccccccccCCHHHHHHHHHHhhHHHHHHHHHHHHhhccCCeEE
Confidence 9999998888753 68999999997541 22333556778899999999999999997541 113999
Q ss_pred EeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCC
Q 011707 227 KLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTD 303 (479)
Q Consensus 227 ~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~ 303 (479)
++||...++. .....|+.||++.+.+++.++.++ |+++++++||.|..+...
T Consensus 146 ~iss~~~~~~-------------------------~~~~~Y~asKaa~~~l~~~la~e~~~~gi~vn~v~PG~v~T~~~~ 200 (269)
T 2h7i_A 146 GMDFDPSRAM-------------------------PAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMS 200 (269)
T ss_dssp EEECCCSSCC-------------------------TTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHH
T ss_pred EEcCcccccc-------------------------CchHHHHHHHHHHHHHHHHHHHHhcccCcEEEEEecCcccchhhh
Confidence 9998654322 236789999999999999999885 899999999988654210
Q ss_pred chhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 304 ETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 304 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
...... ...........+...+....++ .+.+...+|+|++++.++......-.++++++.++
T Consensus 201 ------~~~~~~-~~~~~~~~~~~~~~~~~~~~p~--------~rr~~~p~dvA~~v~~L~s~~~~~itG~~i~vdGG 263 (269)
T 2h7i_A 201 ------AIVGGA-LGEEAGAQIQLLEEGWDQRAPI--------GWNMKDATPVAKTVCALLSDWLPATTGDIIYADGG 263 (269)
T ss_dssp ------HHHTTT-TCHHHHHHHHHHHHHHHHHCTT--------CCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTT
T ss_pred ------cccccc-chhhHHHHHHHHHHhhhccCCc--------ccCCCCHHHHHHHHHHHhCchhccCcceEEEecCC
Confidence 000000 0000000000111111111110 01367889999999999976544333358888775
|
| >3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics, unknown function, oxidoreductase, PSI- 2; 2.40A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.7e-22 Score=185.62 Aligned_cols=212 Identities=16% Similarity=0.112 Sum_probs=137.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|+||||||+|+||.+++++|++ |+.|++++|.... .+...+ ..++.++.+|+++
T Consensus 3 l~~k~vlITGas~gIG~~~a~~l~~-g~~v~~~~r~~~~--------------------~~~~~~--~~~~~~~~~D~~~ 59 (245)
T 3e9n_A 3 LKKKIAVVTGATGGMGIEIVKDLSR-DHIVYALGRNPEH--------------------LAALAE--IEGVEPIESDIVK 59 (245)
T ss_dssp ---CEEEEESTTSHHHHHHHHHHTT-TSEEEEEESCHHH--------------------HHHHHT--STTEEEEECCHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHhC-CCeEEEEeCCHHH--------------------HHHHHh--hcCCcceecccch
Confidence 5689999999999999999999988 9999999875432 111111 1468899999988
Q ss_pred hHHH---HHHhhhc-CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccccc
Q 011707 164 FEFL---SESFKSF-EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGEY 234 (479)
Q Consensus 164 ~~~~---~~~~~~~-~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v~ 234 (479)
.+.. .+.++.. ++|+||||||....... ..+++++..++++|+.|+.++++++.. .+ + +||++||...+
T Consensus 60 ~~~~~~~~~~~~~~~~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~~~~~~~~~~~-g-~iv~isS~~~~ 137 (245)
T 3e9n_A 60 EVLEEGGVDKLKNLDHVDTLVHAAAVARDTTIEAGSVAEWHAHLDLNVIVPAELSRQLLPALRAAS-G-CVIYINSGAGN 137 (245)
T ss_dssp HHHTSSSCGGGTTCSCCSEEEECC----------CHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C-EEEEEC-----
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhcC-C-eEEEEcCcccc
Confidence 7542 2233322 69999999997654322 225556788899999999988887743 33 4 89999997655
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
. +......|+.||++.+.+++.++.+ .|+++++++||.|.++....
T Consensus 138 ~------------------------~~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~t~~~~~------- 186 (245)
T 3e9n_A 138 G------------------------PHPGNTIYAASKHALRGLADAFRKEEANNGIRVSTVSPGPTNTPMLQG------- 186 (245)
T ss_dssp -----------------------------CHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC--------------
T ss_pred c------------------------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCeEEEEEecCCccCchhhh-------
Confidence 3 2234689999999999999999987 48999999999998874221
Q ss_pred hcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeC
Q 011707 312 CNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQF 379 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~ 379 (479)
+.... ........+++++|+|++++.+++.+.. + .++|+.
T Consensus 187 ----------------~~~~~---------~~~~~~~~~~~p~dvA~~i~~l~~~~~~-~--~~~~i~ 226 (245)
T 3e9n_A 187 ----------------LMDSQ---------GTNFRPEIYIEPKEIANAIRFVIDAGET-T--QITNVD 226 (245)
T ss_dssp ----------------------------------CCGGGSCHHHHHHHHHHHHTSCTT-E--EEEEEE
T ss_pred ----------------hhhhh---------hcccccccCCCHHHHHHHHHHHHcCCCc-c--ceeeeE
Confidence 11000 0111224578999999999999987654 3 378764
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-21 Score=183.31 Aligned_cols=229 Identities=12% Similarity=0.084 Sum_probs=151.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+||||||+|+||.+++++|+++|++|++++|..... .+ ...+... +.++..+ |..+.+
T Consensus 1 Mk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~-~~~l~~~-~~~~~~~--d~~~v~ 60 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQK----------------DE-LEAFAET-YPQLKPM--SEQEPA 60 (254)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSH----------------HH-HHHHHHH-CTTSEEC--CCCSHH
T ss_pred CeEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HH-HHHHHhc-CCcEEEE--CHHHHH
Confidence 47899999999999999999999999999998754311 01 1111111 2233333 444432
Q ss_pred HH-HHHhhhc-CCCEEEEccccc-Ccc-cccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccccccCC
Q 011707 166 FL-SESFKSF-EPDAVVHFGEQR-SAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEYGTP 237 (479)
Q Consensus 166 ~~-~~~~~~~-~~D~Vih~A~~~-~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~g~~ 237 (479)
.+ +++.+.+ ++|+||||||.. ... ....+.+++.+++++|+.|+.++++++. +.+.+ +||++||...+.
T Consensus 61 ~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~~~g-~iv~isS~~~~~-- 137 (254)
T 1zmt_A 61 ELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSG-HIIFITSATPFG-- 137 (254)
T ss_dssp HHHHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCSTTTS--
T ss_pred HHHHHHHHHhCCCCEEEECCCcCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECCccccc--
Confidence 22 2222222 799999999976 322 2333556778899999999999998874 34445 999999965442
Q ss_pred CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
+..+...|+.||++.+.+++.++.++ |+++++++||.|+||.......++-.
T Consensus 138 ----------------------~~~~~~~Y~~sK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~~~~~~~~~~T~~~--- 192 (254)
T 1zmt_A 138 ----------------------PWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPW--- 192 (254)
T ss_dssp ----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHHH---
T ss_pred ----------------------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEecCccccccccccCCCccc---
Confidence 22336799999999999999999885 89999999999999865321110000
Q ss_pred cCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.. ............ ....+.+++|+|++++.++..... .|+ ++++.++
T Consensus 193 -------~~-~~~~~~~~~~~~---------p~~~~~~p~dvA~~v~~l~s~~~~~~tG~--~~~vdgG 242 (254)
T 1zmt_A 193 -------KT-NPEHVAHVKKVT---------ALQRLGTQKELGELVAFLASGSCDYLTGQ--VFWLAGG 242 (254)
T ss_dssp -------TT-CHHHHHHHHHHS---------SSSSCBCHHHHHHHHHHHHTTSCGGGTTC--EEEESTT
T ss_pred -------cc-ChHHHHHHhccC---------CCCCCcCHHHHHHHHHHHhCcccCCccCC--EEEECCC
Confidence 00 011111111111 112468899999999999986543 455 8999875
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-21 Score=181.20 Aligned_cols=175 Identities=16% Similarity=0.086 Sum_probs=133.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+|+||.+++++|+++|++|++++|..... .+..+.+... +.++.++.+|++|
T Consensus 3 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~----------------~~~~~~~~~~-~~~~~~~~~Dv~~ 65 (260)
T 2qq5_A 3 MNGQVCVVTGASRGIGRGIALQLCKAGATVYITGRHLDTL----------------RVVAQEAQSL-GGQCVPVVCDSSQ 65 (260)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHH-SSEEEEEECCTTS
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHH----------------HHHHHHHHHc-CCceEEEECCCCC
Confidence 4689999999999999999999999999999998854321 1111111111 3478899999999
Q ss_pred hHHHHHHhhhc------CCCEEEEccc--cc------CcccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceE
Q 011707 164 FEFLSESFKSF------EPDAVVHFGE--QR------SAPYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHL 225 (479)
Q Consensus 164 ~~~~~~~~~~~------~~D~Vih~A~--~~------~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~ 225 (479)
+++++++++.. ++|+|||||| .. ..+....+.+++..++++|+.++.++.+++. +.+.+ +|
T Consensus 66 ~~~v~~~~~~~~~~~~g~id~lvnnAg~g~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~g-~i 144 (260)
T 2qq5_A 66 ESEVRSLFEQVDREQQGRLDVLVNNAYAGVQTILNTRNKAFWETPASMWDDINNVGLRGHYFCSVYGARLMVPAGQG-LI 144 (260)
T ss_dssp HHHHHHHHHHHHHHHTTCCCEEEECCCTTHHHHHHTTTCCTTTSCTTHHHHHHTTTTHHHHHHHHHHHHHHGGGTCC-EE
T ss_pred HHHHHHHHHHHHHhcCCCceEEEECCccccccccccCCCccccCCHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCc-EE
Confidence 99888877542 5899999994 32 1122233556678899999999988887764 34445 99
Q ss_pred EEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCC
Q 011707 226 VKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVR 301 (479)
Q Consensus 226 V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~ 301 (479)
|++||...+.. .+...|+.||++.+.+++.++.++ |+++++++||.|..+.
T Consensus 145 v~isS~~~~~~-------------------------~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~ 198 (260)
T 2qq5_A 145 VVISSPGSLQY-------------------------MFNVPYGVGKAACDKLAADCAHELRRHGVSCVSLWPGIVQTEL 198 (260)
T ss_dssp EEECCGGGTSC-------------------------CSSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCCSCTTT
T ss_pred EEEcChhhcCC-------------------------CCCCchHHHHHHHHHHHHHHHHHhccCCeEEEEEecCccccHH
Confidence 99999765421 125789999999999999998874 8999999999998774
|
| >1oaa_A Sepiapterin reductase; tetrahydrobiopterin, oxidoreductase; HET: NAP; 1.25A {Mus musculus} SCOP: c.2.1.2 PDB: 1nas_A* 1sep_A* 1z6z_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.1e-22 Score=186.67 Aligned_cols=178 Identities=10% Similarity=0.018 Sum_probs=135.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHh---CCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSN---KGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYI 158 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~---~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~ 158 (479)
.+++|++|||||+|+||.+++++|++ +|++|++++|..... .+..+.+... .+.++.++.
T Consensus 3 ~l~~k~~lVTGas~gIG~~ia~~l~~~~~~G~~V~~~~r~~~~~----------------~~~~~~l~~~~~~~~~~~~~ 66 (259)
T 1oaa_A 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESML----------------RQLKEELGAQQPDLKVVLAA 66 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHHH----------------HHHHHHHHHHCTTSEEEEEE
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHhhcCCCeEEEEeCCHHHH----------------HHHHHHHHhhCCCCeEEEEe
Confidence 35689999999999999999999999 899999999864321 1111122111 135788999
Q ss_pred cccCChHHHHHHhhhc-------CCC--EEEEcccccCc---cccc-ccccccchhhhhhHHHHHHHHHHHHHcC-----
Q 011707 159 GDICDFEFLSESFKSF-------EPD--AVVHFGEQRSA---PYSM-IDRSRAVFTQHNNVIGTLNVLFAMKEFR----- 220 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~-------~~D--~Vih~A~~~~~---~~~~-~~~~~~~~~~~~Nv~g~~~ll~~a~~~g----- 220 (479)
+|++|+++++++++.. ++| +||||||.... +... .+.+++..++++|+.|+.++++++...-
T Consensus 67 ~Dv~~~~~v~~~~~~~~~~~~~g~~d~~~lvnnAg~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~ 146 (259)
T 1oaa_A 67 ADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPG 146 (259)
T ss_dssp CCTTSHHHHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTT
T ss_pred cCCCCHHHHHHHHHHHHhccccccCCccEEEECCcccCCCCcchhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999988887643 468 99999997532 1222 3456788899999999999999997532
Q ss_pred CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-CCceEEeecCeeec
Q 011707 221 QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-GIRATDLNQGVVYG 299 (479)
Q Consensus 221 ~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-gl~~~ivRp~~v~G 299 (479)
...+||++||...+. +..+...|+.||++.+.+++.++.++ +++++++.||.|-.
T Consensus 147 ~~g~iv~isS~~~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~i~vn~v~PG~v~T 202 (259)
T 1oaa_A 147 LSKTVVNISSLCALQ------------------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDN 202 (259)
T ss_dssp CEEEEEEECCGGGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSS
T ss_pred CCceEEEEcCchhcC------------------------CCCCccHHHHHHHHHHHHHHHHHhhCCCceEEEecCCCcCc
Confidence 123899999976552 22346899999999999999999986 48999999988754
Q ss_pred C
Q 011707 300 V 300 (479)
Q Consensus 300 p 300 (479)
+
T Consensus 203 ~ 203 (259)
T 1oaa_A 203 D 203 (259)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >3u0b_A Oxidoreductase, short chain dehydrogenase/reducta protein; structural genomics, ssgcid; 1.70A {Mycobacterium smegmatis} PDB: 3lls_A 3v1t_C 3v1u_A* 4fw8_A* 3q6i_A* 3m1l_A | Back alignment and structure |
|---|
Probab=99.86 E-value=6.6e-21 Score=193.96 Aligned_cols=226 Identities=11% Similarity=0.015 Sum_probs=160.3
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..+++|++|||||+|+||.+++++|+++|++|+++++..... .+.+..+. .++.++.+|+
T Consensus 209 ~~l~gk~~LVTGgsgGIG~aiA~~La~~Ga~Vvl~~r~~~~~--------------~l~~~~~~------~~~~~~~~Dv 268 (454)
T 3u0b_A 209 KPLDGKVAVVTGAARGIGATIAEVFARDGATVVAIDVDGAAE--------------DLKRVADK------VGGTALTLDV 268 (454)
T ss_dssp STTTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEECGGGHH--------------HHHHHHHH------HTCEEEECCT
T ss_pred cCCCCCEEEEeCCchHHHHHHHHHHHHCCCEEEEEeCCccHH--------------HHHHHHHH------cCCeEEEEec
Confidence 345789999999999999999999999999999998753210 01111111 1467899999
Q ss_pred CChHHHHHHhhhc------CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeec
Q 011707 162 CDFEFLSESFKSF------EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~------~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS 230 (479)
+|.++++++++.. .+|+||||||+..... ...+++++..++++|+.|+.++.+++... +.+ +||++||
T Consensus 269 td~~~v~~~~~~~~~~~g~~id~lV~nAGv~~~~~~~~~~~~~~~~~~~~nv~g~~~l~~~~~~~~~~~~~g-~iV~iSS 347 (454)
T 3u0b_A 269 TADDAVDKITAHVTEHHGGKVDILVNNAGITRDKLLANMDEKRWDAVIAVNLLAPQRLTEGLVGNGTIGEGG-RVIGLSS 347 (454)
T ss_dssp TSTTHHHHHHHHHHHHSTTCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHTTSSCTTC-EEEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCCceEEEECCcccCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCC-EEEEEeC
Confidence 9999988887643 3999999999865432 33466678899999999999999999875 444 9999999
Q ss_pred cc-cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 231 MG-EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 231 ~~-v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
.. ..+.+ ....|+.+|+..+.+++.++.++ |++++++.||.|..+....
T Consensus 348 ~a~~~g~~-------------------------g~~~YaasKaal~~l~~~la~e~~~~gI~vn~v~PG~v~T~~~~~-- 400 (454)
T 3u0b_A 348 MAGIAGNR-------------------------GQTNYATTKAGMIGLAEALAPVLADKGITINAVAPGFIETKMTEA-- 400 (454)
T ss_dssp HHHHHCCT-------------------------TCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECSBCC-------
T ss_pred hHhCCCCC-------------------------CCHHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEcCcccChhhhh--
Confidence 54 34332 36899999999999999988774 8999999999998764321
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
+.......... ......+...+|++++++.++......-.++++++.++
T Consensus 401 ------------------~~~~~~~~~~~--------~~~l~r~g~pedvA~~v~fL~s~~a~~itG~~i~vdGG 449 (454)
T 3u0b_A 401 ------------------IPLATREVGRR--------LNSLFQGGQPVDVAELIAYFASPASNAVTGNTIRVCGQ 449 (454)
T ss_dssp -----------------------CHHHHH--------SBTTSSCBCHHHHHHHHHHHHCGGGTTCCSCEEEESSS
T ss_pred ------------------cchhhHHHHHh--------hccccCCCCHHHHHHHHHHHhCCccCCCCCcEEEECCc
Confidence 00000000000 01122356889999999999875443222349998875
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.9e-20 Score=181.82 Aligned_cols=200 Identities=14% Similarity=0.060 Sum_probs=135.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..++|+||||||+|+||.+++++|+++|++|++++|.... ..+..+.+....+.++.++.+|++
T Consensus 9 ~~~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~----------------~~~~~~~l~~~~~~~~~~~~~Dl~ 72 (311)
T 3o26_A 9 VTKRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTK----------------GHEAVEKLKNSNHENVVFHQLDVT 72 (311)
T ss_dssp ---CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHTTTCCSEEEEECCTT
T ss_pred cCCCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHH----------------HHHHHHHHHhcCCCceEEEEccCC
Confidence 3468999999999999999999999999999999986542 112233333333457999999999
Q ss_pred Ch-HHHHHHhhhc-----CCCEEEEcccccCcc-------------------------------cccccccccchhhhhh
Q 011707 163 DF-EFLSESFKSF-----EPDAVVHFGEQRSAP-------------------------------YSMIDRSRAVFTQHNN 205 (479)
Q Consensus 163 d~-~~~~~~~~~~-----~~D~Vih~A~~~~~~-------------------------------~~~~~~~~~~~~~~~N 205 (479)
|. ++++++++.. ++|+||||||..... ....+.+++..++++|
T Consensus 73 ~~~~~v~~~~~~~~~~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N 152 (311)
T 3o26_A 73 DPIATMSSLADFIKTHFGKLDILVNNAGVAGFSVDADRFKAMISDIGEDSEELVKIYEKPEAQELMSETYELAEECLKIN 152 (311)
T ss_dssp SCHHHHHHHHHHHHHHHSSCCEEEECCCCCSCEECHHHHHHHHHHHCSSTTHHHHHTTSHHHHTTEECCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEECCcccccccccchhhhcccccccchhhcchhhcccchhcccccchhhhhhheeee
Confidence 98 8777776533 799999999976421 0112334566779999
Q ss_pred HHHHHHHHHHHHH----cCCcceEEEeeccccc-cCCCCC-C-----cCCceee-------------cCCCCCCCCCCCC
Q 011707 206 VIGTLNVLFAMKE----FRQECHLVKLGTMGEY-GTPNID-I-----EEGYITI-------------NHNGRTDTLPYPK 261 (479)
Q Consensus 206 v~g~~~ll~~a~~----~g~~~~~V~~SS~~v~-g~~~~~-~-----~e~~~~~-------------~~~~~~~~~~~~~ 261 (479)
+.|+.++++++.. .+.+ +||++||...+ +..... . .+..++. ......+. ....
T Consensus 153 ~~g~~~l~~~~~~~l~~~~~~-~IV~isS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 230 (311)
T 3o26_A 153 YNGVKSVTEVLIPLLQLSDSP-RIVNVSSSTGSLKYVSNETALEILGDGDALTEERIDMVVNMLLKDFKENLIET-NGWP 230 (311)
T ss_dssp THHHHHHHHHHHHHHTTSSSC-EEEEECCGGGSGGGCCCHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHTTCTTT-TTCC
T ss_pred eehHHHHHHHhhHhhccCCCC-eEEEEecCCcccccccchhhhhhhccccccchhHHHHHHHHHHhhhhcccccc-ccCc
Confidence 9999999988854 3344 99999995433 211100 0 0000000 00000000 0011
Q ss_pred CCCchhhhhhHHHHHHHHHHHHHh-CCceEEeecCeeecC
Q 011707 262 QASSFYHLSKVHDSHNIAFTCKAW-GIRATDLNQGVVYGV 300 (479)
Q Consensus 262 ~~~~~Y~~sK~~~E~~~~~~~~~~-gl~~~ivRp~~v~Gp 300 (479)
.+...|+.||++.+.+++.+++++ +++++++.||.|..+
T Consensus 231 ~~~~~Y~~SK~a~~~~~~~la~e~~~i~v~~v~PG~v~T~ 270 (311)
T 3o26_A 231 SFGAAYTTSKACLNAYTRVLANKIPKFQVNCVCPGLVKTE 270 (311)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHCTTSEEEEECCCSBCSG
T ss_pred ccchhhHHHHHHHHHHHHHHHhhcCCceEEEecCCceecC
Confidence 345789999999999999999986 699999999998765
|
| >1jtv_A 17 beta-hydroxysteroid dehydrogenase type 1; steroid hormones, alternative binding mode, oxidoreductase; HET: TES; 1.54A {Homo sapiens} SCOP: c.2.1.2 PDB: 1dht_A* 1equ_A* 1bhs_A* 1i5r_A* 1qyv_A* 1qyw_A* 1qyx_A* 3dey_X* 3dhe_A* 3hb4_X* 3hb5_X* 3klp_X* 3km0_A* 1iol_A* 1fds_A* 1fdt_A* 3klm_X* 1fdw_A* 1fdu_A* 1fdv_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-20 Score=183.61 Aligned_cols=178 Identities=16% Similarity=0.105 Sum_probs=134.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhc--ccCCCceeEEEcccCC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK--SLTGKNIELYIGDICD 163 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~v~~Dl~d 163 (479)
+|+||||||+|+||.+++++|+++|++|+++++....... ..+..+... ...+.++.++.+|++|
T Consensus 2 ~k~vlVTGas~GIG~ala~~L~~~G~~v~~v~r~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~Dv~d 68 (327)
T 1jtv_A 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKT-------------QGRLWEAARALACPPGSLETLQLDVRD 68 (327)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGG-------------THHHHHHHHHTTCCTTSEEEEECCTTC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCceEEEEeecCcHHH-------------HHHHHHHhhhccCCCCceEEEEecCCC
Confidence 6899999999999999999999999999888775432110 111111111 0113578899999999
Q ss_pred hHHHHHHhhhc---CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecccccc
Q 011707 164 FEFLSESFKSF---EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 164 ~~~~~~~~~~~---~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~g 235 (479)
.++++++++.. ++|+||||||...... ...+.+++.+++++|+.|+.++++++ ++.+.+ +||++||...+.
T Consensus 69 ~~~v~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~~~g-~IV~isS~~~~~ 147 (327)
T 1jtv_A 69 SKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSG-RVLVTGSVGGLM 147 (327)
T ss_dssp HHHHHHHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEEEEGGGTS
T ss_pred HHHHHHHHHHHhcCCCCEEEECCCcCCCCchhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCC-EEEEECCccccc
Confidence 99999998853 5999999999754322 23355667889999999999999986 344555 999999965442
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---hCCceEEeecCeeecCC
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---WGIRATDLNQGVVYGVR 301 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---~gl~~~ivRp~~v~Gp~ 301 (479)
+......|+.||++.+.+++.++.+ +|+++++|+||.|..+.
T Consensus 148 ------------------------~~~~~~~Y~aSK~a~~~~~~~la~el~~~gI~v~~v~PG~v~T~~ 192 (327)
T 1jtv_A 148 ------------------------GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTAF 192 (327)
T ss_dssp ------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC--
T ss_pred ------------------------CCCCChHHHHHHHHHHHHHHHHHHHhhhcCcEEEEEEeCcccChH
Confidence 1123578999999999999999887 58999999999998765
|
| >1d7o_A Enoyl-[acyl-carrier protein] reductase (NADH) PRE; triclosan, enoyl reductase, oxidoreductase; HET: NAD TCL; 1.90A {Brassica napus} SCOP: c.2.1.2 PDB: 1eno_A* 1enp_A* 1cwu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-19 Score=173.85 Aligned_cols=240 Identities=13% Similarity=0.077 Sum_probs=151.6
Q ss_pred CCCCcEEEEEcCC--chhhHHHHHHHHhCCCeEEEEeccccccc-ccccCCCCCCccchhhhhhhhhcccC-CCceeEEE
Q 011707 83 PSKAKRVMIIGGD--GYCGWATALHLSNKGYEVAIVDSLIRRLF-DHQLGLDSLTPIASIHDRLRCWKSLT-GKNIELYI 158 (479)
Q Consensus 83 ~~~~~~vLVtGat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~ 158 (479)
.+++|++|||||+ |+||.+++++|+++|++|++++|...... ........+. ..+.+.... ......+.
T Consensus 5 ~l~~k~~lVTGas~~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 77 (297)
T 1d7o_A 5 DLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKFD-------QSRVLPDGSLMEIKKVYP 77 (297)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTTT-------GGGBCTTSSBCCEEEEEE
T ss_pred ccCCCEEEEECCCCCCChHHHHHHHHHHCCCeEEEeeccccchhhhhhhhhhHhh-------hhhhhccccccccccccc
Confidence 3578999999999 99999999999999999999986421000 0000000000 000000000 00012222
Q ss_pred c------------ccCC--------hHHHHHHhhhc-----CCCEEEEcccccC---cccccccccccchhhhhhHHHHH
Q 011707 159 G------------DICD--------FEFLSESFKSF-----EPDAVVHFGEQRS---APYSMIDRSRAVFTQHNNVIGTL 210 (479)
Q Consensus 159 ~------------Dl~d--------~~~~~~~~~~~-----~~D~Vih~A~~~~---~~~~~~~~~~~~~~~~~Nv~g~~ 210 (479)
+ |++| +++++++++.. ++|+||||||... .+....+.+++..++++|+.|+.
T Consensus 78 ~~~~~~~~~dv~~Dv~~~~~~~~~~~~~v~~~~~~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~~vN~~g~~ 157 (297)
T 1d7o_A 78 LDAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFV 157 (297)
T ss_dssp ECTTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred cceeccchhhhhhhhhccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCccCCCCcccCCHHHHHHHHHHhhhHHH
Confidence 2 3332 44555555432 6999999999642 12233456678889999999999
Q ss_pred HHHHHHHHcC-CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCC-chhhhhhHHHHHHHHHHHHH----
Q 011707 211 NVLFAMKEFR-QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS-SFYHLSKVHDSHNIAFTCKA---- 284 (479)
Q Consensus 211 ~ll~~a~~~g-~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~---- 284 (479)
++++++...- .+.+||++||...+.. .... ..|+.||++.+.+++.++.+
T Consensus 158 ~l~~~~~~~m~~~g~iv~isS~~~~~~------------------------~~~~~~~Y~asKaa~~~~~~~la~e~~~~ 213 (297)
T 1d7o_A 158 SLLSHFLPIMNPGGASISLTYIASERI------------------------IPGYGGGMSSAKAALESDTRVLAFEAGRK 213 (297)
T ss_dssp HHHHHHGGGEEEEEEEEEEECGGGTSC------------------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCceEEEEeccccccC------------------------CCCcchHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999997641 1139999999654321 1123 57999999999999998876
Q ss_pred hCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHH
Q 011707 285 WGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAI 364 (479)
Q Consensus 285 ~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~ 364 (479)
+|+++++++||.|.++..... .....+...+....+ ...+..++|+|++++.++
T Consensus 214 ~gi~vn~v~PG~v~T~~~~~~-----------------~~~~~~~~~~~~~~p---------~~r~~~pedvA~~v~~l~ 267 (297)
T 1d7o_A 214 QNIRVNTISAGPLGSRAAKAI-----------------GFIDTMIEYSYNNAP---------IQKTLTADEVGNAAAFLV 267 (297)
T ss_dssp HCCEEEEEEECCCBCCCSSCC-----------------SHHHHHHHHHHHHSS---------SCCCBCHHHHHHHHHHHT
T ss_pred cCcEEEEEeccccccchhhhc-----------------cccHHHHHHhhccCC---------CCCCCCHHHHHHHHHHHh
Confidence 589999999999999864321 011222222222222 124578999999999988
Q ss_pred hCCCC--CCCceEEEeCCC
Q 011707 365 ANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 365 ~~~~~--~g~~~~~ni~~~ 381 (479)
..... .|+ ++++.++
T Consensus 268 s~~~~~itG~--~i~vdgG 284 (297)
T 1d7o_A 268 SPLASAITGA--TIYVDNG 284 (297)
T ss_dssp SGGGTTCCSC--EEEESTT
T ss_pred CccccCCCCC--EEEECCC
Confidence 65333 354 8999876
|
| >1gz6_A Estradiol 17 beta-dehydrogenase 4; 17BETA-HSD4, MFE-2, beta-oxidation, peroxisome, SDR, steroid biosynthesis, oxidoreductase, NADP; HET: NAI; 2.38A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1zbq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-20 Score=179.56 Aligned_cols=223 Identities=15% Similarity=0.059 Sum_probs=152.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+||||||+|+||.+++++|+++|++|+++++...... . -+......+..+.+... . ..+.+|++
T Consensus 6 ~l~gk~~lVTGas~GIG~~~a~~La~~Ga~Vv~~~~~~~~~~-~------~R~~~~~~~~~~~l~~~---~-~~~~~D~~ 74 (319)
T 1gz6_A 6 RFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKG-V------GKGSSAADKVVEEIRRR---G-GKAVANYD 74 (319)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTS-C------BCCSHHHHHHHHHHHHT---T-CEEEEECC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCccccc-c------cCCHHHHHHHHHHHHhh---C-CeEEEeCC
Confidence 467899999999999999999999999999999876421000 0 00000111111222111 1 12358999
Q ss_pred ChHHHHHHhhh----c-CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc-
Q 011707 163 DFEFLSESFKS----F-EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM- 231 (479)
Q Consensus 163 d~~~~~~~~~~----~-~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~- 231 (479)
|.++++++++. + ++|+||||||...... ...+.+++..++++|+.|+.++++++. +.+.+ +||++||.
T Consensus 75 ~~~~~~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~~~g-rIV~vsS~~ 153 (319)
T 1gz6_A 75 SVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYG-RIIMTASAS 153 (319)
T ss_dssp CGGGHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEECCHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEECChh
Confidence 98877666543 2 6999999999765432 233556778899999999999998873 34555 99999995
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
+.++.+ +...|+.||++.+.+++.++.++ |+++++++||.+ .+...
T Consensus 154 ~~~~~~-------------------------~~~~Y~aSK~a~~~~~~~la~el~~~gI~vn~v~PG~~-t~~~~----- 202 (319)
T 1gz6_A 154 GIYGNF-------------------------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG-SRMTE----- 202 (319)
T ss_dssp HHHCCT-------------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC-STTTG-----
T ss_pred hccCCC-------------------------CCHHHHHHHHHHHHHHHHHHHHhcccCEEEEEEeCCCc-ccccc-----
Confidence 555432 26789999999999999999884 899999999986 32110
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC-CCCceEEEeCCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ-PGEFRVFNQFTEQ 382 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~-~g~~~~~ni~~~~ 382 (479)
..+. .....+++++|+|.+++.++..+.. .|+ +|++.++.
T Consensus 203 --------------~~~~------------------~~~~~~~~p~dvA~~~~~l~s~~~~~tG~--~~~v~GG~ 243 (319)
T 1gz6_A 203 --------------TVMP------------------EDLVEALKPEYVAPLVLWLCHESCEENGG--LFEVGAGW 243 (319)
T ss_dssp --------------GGSC------------------HHHHHHSCGGGTHHHHHHHTSTTCCCCSC--EEEEETTE
T ss_pred --------------ccCC------------------hhhhccCCHHHHHHHHHHHhCchhhcCCC--EEEECCCe
Confidence 0000 0112346889999999998876432 344 89887753
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-20 Score=176.31 Aligned_cols=219 Identities=9% Similarity=-0.033 Sum_probs=146.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEE-e--cccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIV-D--SLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~-d--r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+|++|||||+|+||.+++++|+++|++|+++ + |..... .+..+.+ .+..+. |..
T Consensus 1 ~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~~~~r~~~~~----------------~~~~~~~-----~~~~~~--~~~ 57 (244)
T 1zmo_A 1 MVIALVTHARHFAGPAAVEALTQDGYTVVCHDASFADAAER----------------QRFESEN-----PGTIAL--AEQ 57 (244)
T ss_dssp -CEEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSHHHH----------------HHHHHHS-----TTEEEC--CCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCcCCHHHH----------------HHHHHHh-----CCCccc--CHH
Confidence 5799999999999999999999999999998 5 643211 1111111 122221 433
Q ss_pred ChHH-HHHHhhhc-CCCEEEEcccccCc---c-cccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 163 DFEF-LSESFKSF-EPDAVVHFGEQRSA---P-YSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~-~~~~~~~~-~~D~Vih~A~~~~~---~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
+.+. ++++.+.+ ++|+||||||.... . ....+.+++..++++|+.|+.++++++. +.+.+ +||++||..
T Consensus 58 ~v~~~~~~~~~~~g~iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~~~g-~iv~isS~~ 136 (244)
T 1zmo_A 58 KPERLVDATLQHGEAIDTIVSNDYIPRPMNRLPLEGTSEADIRQMFEALSIFPILLLQSAIAPLRAAGGA-SVIFITSSV 136 (244)
T ss_dssp CGGGHHHHHGGGSSCEEEEEECCCCCTTGGGCCSTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCGG
T ss_pred HHHHHHHHHHHHcCCCCEEEECCCcCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCc-EEEEECChh
Confidence 3332 23333333 68999999997643 2 2233556778899999999999998885 34445 999999976
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCC---Cchh
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRT---DETA 306 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~---~~~~ 306 (479)
.+.. ......|+.||++.+.+++.++.++ |+++++++||.|..+.. ...
T Consensus 137 ~~~~------------------------~~~~~~Y~asK~a~~~~~~~la~e~~~~gi~v~~v~PG~v~T~~~~~~~~~- 191 (244)
T 1zmo_A 137 GKKP------------------------LAYNPLYGPARAATVALVESAAKTLSRDGILLYAIGPNFFNNPTYFPTSDW- 191 (244)
T ss_dssp GTSC------------------------CTTCTTHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESSBCBTTTBCHHHH-
T ss_pred hCCC------------------------CCCchHHHHHHHHHHHHHHHHHHHHhhcCcEEEEEeeCCCcCCcccccccc-
Confidence 5431 2235789999999999999998874 89999999999977642 100
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhc-CCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAV-GHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. . ......... ..+ ...+...+|+|++++.++..... .|+ ++.+.++
T Consensus 192 -----~---------~---~~~~~~~~~~~~p---------~~r~~~pe~vA~~v~~l~s~~~~~~tG~--~i~vdgG 241 (244)
T 1zmo_A 192 -----E---------N---NPELRERVDRDVP---------LGRLGRPDEMGALITFLASRRAAPIVGQ--FFAFTGG 241 (244)
T ss_dssp -----H---------H---CHHHHHHHHHHCT---------TCSCBCHHHHHHHHHHHHTTTTGGGTTC--EEEESTT
T ss_pred -----c---------c---hHHHHHHHhcCCC---------CCCCcCHHHHHHHHHHHcCccccCccCC--EEEeCCC
Confidence 0 0 011111111 111 12467899999999999986543 355 8888765
|
| >2fr1_A Erythromycin synthase, eryai; short chain dehydrogenase/reductase, oxidoreductase; HET: NDP; 1.79A {Saccharopolyspora erythraea} SCOP: c.2.1.2 c.2.1.2 PDB: 2fr0_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=185.83 Aligned_cols=230 Identities=15% Similarity=0.118 Sum_probs=161.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCe-EEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYE-VAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..+++||||||+|+||.+++++|+++|++ |++++|...... ...+..+.+.. .+.++.++.+|++
T Consensus 224 ~~~~~vLITGgtGgIG~~la~~La~~G~~~vvl~~R~~~~~~-------------~~~~l~~~l~~-~g~~v~~~~~Dv~ 289 (486)
T 2fr1_A 224 KPTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDAD-------------GAGELVAELEA-LGARTTVAACDVT 289 (486)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGST-------------THHHHHHHHHH-TTCEEEEEECCTT
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcCCCCCcH-------------HHHHHHHHHHh-cCCEEEEEEeCCC
Confidence 35789999999999999999999999995 888888643110 01111112211 2457899999999
Q ss_pred ChHHHHHHhhhc----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecc-ccccC
Q 011707 163 DFEFLSESFKSF----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTM-GEYGT 236 (479)
Q Consensus 163 d~~~~~~~~~~~----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~-~v~g~ 236 (479)
|.+++.++++.. .+|+||||||...... ...+++++..++++|+.|+.++.+++++.+.+ +||++||. +++|.
T Consensus 290 d~~~v~~~~~~i~~~g~ld~VIh~AG~~~~~~l~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~-~~V~~SS~a~~~g~ 368 (486)
T 2fr1_A 290 DRESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLT-AFVLFSSFASAFGA 368 (486)
T ss_dssp CHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCS-EEEEEEEHHHHTCC
T ss_pred CHHHHHHHHHHHHhcCCCcEEEECCccCCCCccccCCHHHHHHHHHHHHHHHHHHHHHhCcCCCC-EEEEEcChHhcCCC
Confidence 999999999854 4699999999765322 23355667888999999999999999887776 99999995 55554
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccC
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLD 316 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~ 316 (479)
+. ...|+.+|...+.+...+. ..|+++++++||.+++++...
T Consensus 369 ~g-------------------------~~~Yaaaka~l~~la~~~~-~~gi~v~~i~pG~~~~~gm~~------------ 410 (486)
T 2fr1_A 369 PG-------------------------LGGYAPGNAYLDGLAQQRR-SDGLPATAVAWGTWAGSGMAE------------ 410 (486)
T ss_dssp TT-------------------------CTTTHHHHHHHHHHHHHHH-HTTCCCEEEEECCBC------------------
T ss_pred CC-------------------------CHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCeeCCCcccc------------
Confidence 32 5789999999999887654 459999999999988764110
Q ss_pred CCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHH
Q 011707 317 YDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVT 393 (479)
Q Consensus 317 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~ 393 (479)
.... ..+. ..-..+++.+|+++++..++...... +.+. .+.|..+...+.
T Consensus 411 ----------~~~~--------~~~~--~~g~~~i~~e~~a~~l~~~l~~~~~~-----~~v~--~~d~~~~~~~~~ 460 (486)
T 2fr1_A 411 ----------GPVA--------DRFR--RHGVIEMPPETACRALQNALDRAEVC-----PIVI--DVRWDRFLLAYT 460 (486)
T ss_dssp ------------------------CT--TTTEECBCHHHHHHHHHHHHHTTCSS-----CEEC--EECHHHHHHHHT
T ss_pred ----------hhHH--------HHHH--hcCCCCCCHHHHHHHHHHHHhCCCCe-----EEEE--eCCHHHHhhhhc
Confidence 0000 0011 11246799999999999999865431 2222 255666665443
|
| >2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2; short-chain dehydrogenase/reductase, rossman fold; 1.95A {Streptomyces fradiae} | Back alignment and structure |
|---|
Probab=99.81 E-value=5.4e-19 Score=182.24 Aligned_cols=230 Identities=14% Similarity=0.134 Sum_probs=163.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.+++||||||+|+||.+++++|+++|+ +|++++|...... ...+..+.+.. .+.++.++.+|++|
T Consensus 258 ~~~~vLITGgtGgIG~~lA~~La~~G~~~vvl~~R~~~~~~-------------~~~~l~~~l~~-~g~~v~~~~~Dvtd 323 (511)
T 2z5l_A 258 PSGTVLITGGMGAIGRRLARRLAAEGAERLVLTSRRGPEAP-------------GAAELAEELRG-HGCEVVHAACDVAE 323 (511)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTCSEEEEEESSGGGST-------------THHHHHHHHHT-TTCEEEEEECCSSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCcEEEEEecCCcccH-------------HHHHHHHHHHh-cCCEEEEEEeCCCC
Confidence 578999999999999999999999999 5888887543110 01111122221 24578999999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeecc-ccccCCCCC
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTM-GEYGTPNID 240 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~-~v~g~~~~~ 240 (479)
.+++.++++...+|+||||||...... ...+++++..++++|+.|+.++.+++... +.+ +||++||. +++|..
T Consensus 324 ~~~v~~~~~~~~ld~VVh~AGv~~~~~~~~~~~~~~~~~~~~nv~g~~~L~~~~~~~~~~~-~~V~~SS~a~~~g~~--- 399 (511)
T 2z5l_A 324 RDALAALVTAYPPNAVFHTAGILDDAVIDTLSPESFETVRGAKVCGAELLHQLTADIKGLD-AFVLFSSVTGTWGNA--- 399 (511)
T ss_dssp HHHHHHHHHHSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHHHHHHHHHHHTSSCTTCC-CEEEEEEGGGTTCCT---
T ss_pred HHHHHHHHhcCCCcEEEECCcccCCcccccCCHHHHHHHHHHHHHHHHHHHHHHhhccCCC-EEEEEeCHHhcCCCC---
Confidence 999999998656999999999865432 23355667788999999999999998776 555 99999995 556543
Q ss_pred CcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCc
Q 011707 241 IEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320 (479)
Q Consensus 241 ~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~ 320 (479)
....|+.+|+..+.+++.+. ..|+++++++||.+.+.+..
T Consensus 400 ----------------------g~~~YaaaKa~ld~la~~~~-~~gi~v~sv~pG~~~~tgm~----------------- 439 (511)
T 2z5l_A 400 ----------------------GQGAYAAANAALDALAERRR-AAGLPATSVAWGLWGGGGMA----------------- 439 (511)
T ss_dssp ----------------------TBHHHHHHHHHHHHHHHHHH-TTTCCCEEEEECCBCSTTCC-----------------
T ss_pred ----------------------CCHHHHHHHHHHHHHHHHHH-HcCCcEEEEECCcccCCccc-----------------
Confidence 26899999999999988653 46999999999987432211
Q ss_pred ccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHH
Q 011707 321 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTK 394 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~ 394 (479)
..... ..+.. .-..+++.+|+++++..++..+.. .+.+. .+.|..+...+..
T Consensus 440 -~~~~~---~~~~~-----------~g~~~l~~e~~a~~l~~al~~~~~-----~v~v~--~~d~~~~~~~~~~ 491 (511)
T 2z5l_A 440 -AGAGE---ESLSR-----------RGLRAMDPDAAVDALLGAMGRNDV-----CVTVV--DVDWERFAPATNA 491 (511)
T ss_dssp -CCHHH---HHHHH-----------HTBCCBCHHHHHHHHHHHHHHTCS-----EEEEC--CBCHHHHHHHHHH
T ss_pred -ccccH---HHHHh-----------cCCCCCCHHHHHHHHHHHHhCCCC-----EEEEE--eCCHHHHHhhhcc
Confidence 11111 11110 112468999999999999986432 23333 3556667665554
|
| >3mje_A AMPHB; rossmann fold, oxidoreductase; HET: NDP; 1.36A {Streptomyces nodosus} PDB: 3mjc_A* 3mjs_A* 3mjv_A* 3mjt_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3e-18 Score=175.41 Aligned_cols=176 Identities=14% Similarity=0.124 Sum_probs=136.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++++|||||+|+||.++++.|+++|+ .|++++|...... ...+..+.+.. .+.++.++.+|++|
T Consensus 238 ~~~~vLITGgsgGIG~alA~~La~~Ga~~vvl~~R~~~~~~-------------~~~~l~~~l~~-~g~~v~~~~~Dvtd 303 (496)
T 3mje_A 238 VHGSVLVTGGTGGIGGRVARRLAEQGAAHLVLTSRRGADAP-------------GAAELRAELEQ-LGVRVTIAACDAAD 303 (496)
T ss_dssp CCSEEEEETCSSHHHHHHHHHHHHTTCSEEEEEESSGGGST-------------THHHHHHHHHH-TTCEEEEEECCTTC
T ss_pred CCCEEEEECCCCchHHHHHHHHHHCCCcEEEEEeCCCCChH-------------HHHHHHHHHHh-cCCeEEEEEccCCC
Confidence 358999999999999999999999998 6777777532210 01111122222 24689999999999
Q ss_pred hHHHHHHhhhc----CCCEEEEccccc-Cc-ccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec-cccccC
Q 011707 164 FEFLSESFKSF----EPDAVVHFGEQR-SA-PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT-MGEYGT 236 (479)
Q Consensus 164 ~~~~~~~~~~~----~~D~Vih~A~~~-~~-~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS-~~v~g~ 236 (479)
.+++.++++.. ++|+||||||+. .. .....+++++..++++|+.|+.++.+++...+.+ +||++|| .+++|.
T Consensus 304 ~~~v~~~~~~i~~~g~ld~vVh~AGv~~~~~~l~~~t~e~~~~vl~~nv~g~~~L~~~~~~~~~~-~iV~~SS~a~~~g~ 382 (496)
T 3mje_A 304 REALAALLAELPEDAPLTAVFHSAGVAHDDAPVADLTLGQLDALMRAKLTAARHLHELTADLDLD-AFVLFSSGAAVWGS 382 (496)
T ss_dssp HHHHHHHHHTCCTTSCEEEEEECCCCCCSCCCTTTCCHHHHHHHHHTTHHHHHHHHHHHTTSCCS-EEEEEEEHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCCeEEEECCcccCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHhhccCCC-EEEEEeChHhcCCC
Confidence 99999998753 589999999986 32 2233466678889999999999999999888776 9999999 455554
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCC
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVR 301 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~ 301 (479)
+ ....|+.+|+..+.+.+.+. ..|+++++|.||.+.+++
T Consensus 383 ~-------------------------g~~~YaAaKa~ldala~~~~-~~Gi~v~sV~pG~w~~~g 421 (496)
T 3mje_A 383 G-------------------------GQPGYAAANAYLDALAEHRR-SLGLTASSVAWGTWGEVG 421 (496)
T ss_dssp T-------------------------TCHHHHHHHHHHHHHHHHHH-HTTCCCEEEEECEESSSC
T ss_pred C-------------------------CcHHHHHHHHHHHHHHHHHH-hcCCeEEEEECCcccCCc
Confidence 3 36899999999999988654 569999999999987765
|
| >3oml_A GH14720P, peroxisomal multifunctional enzyme type 2, CG3415; rossmann fold, hot-DOG fold, hydratase 2 motif, peroxisomes, oxidoreductase; 2.15A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-18 Score=183.26 Aligned_cols=223 Identities=10% Similarity=0.005 Sum_probs=145.5
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..+++|++|||||+|+||.+++++|+++|++|+++++........ .......+..+.+... .. .+.+|+
T Consensus 15 ~~l~gk~~lVTGas~GIG~aiA~~La~~Ga~Vv~~~r~~~~~~~~-------~~~~~~~~~~~~i~~~---~~-~~~~D~ 83 (613)
T 3oml_A 15 LRYDGRVAVVTGAGAGLGREYALLFAERGAKVVVNDLGGTHSGDG-------ASQRAADIVVDEIRKA---GG-EAVADY 83 (613)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEC---------------------CHHHHHHHHHHT---TC-CEEECC
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCccccccc-------CCHHHHHHHHHHHHHh---CC-eEEEEe
Confidence 456899999999999999999999999999999988732110000 0000111112222111 11 234799
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~ 231 (479)
+|.++++++++.. ++|+||||||+..... ...+.+++..++++|+.|+.++++++ ++.+.+ +||++||.
T Consensus 84 ~d~~~~~~~~~~~~~~~g~iDiLVnnAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~l~~~~~p~m~~~~~g-~IV~isS~ 162 (613)
T 3oml_A 84 NSVIDGAKVIETAIKAFGRVDILVNNAGILRDRSLVKTSEQDWNLVNDVHLKGSFKCTQAAFPYMKKQNYG-RIIMTSSN 162 (613)
T ss_dssp CCGGGHHHHHC----------CEECCCCCCCCCCSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCE-EEEEECCH
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEECCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECCH
Confidence 9998888877643 6999999999865432 23356678899999999999999988 444545 99999994
Q ss_pred -ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 232 -GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 232 -~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
+.++.+ ....|+.||++.+.+++.++.++ |++++++.||.+-....
T Consensus 163 a~~~~~~-------------------------~~~~Y~asKaal~~lt~~la~e~~~~gI~vn~v~Pg~~t~~~~----- 212 (613)
T 3oml_A 163 SGIYGNF-------------------------GQVNYTAAKMGLIGLANTVAIEGARNNVLCNVIVPTAASRMTE----- 212 (613)
T ss_dssp HHHHCCT-------------------------TCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC------C-----
T ss_pred HHcCCCC-------------------------CChHHHHHHHHHHHHHHHHHHHhCccCeEEEEEECCCCChhhh-----
Confidence 444432 36889999999999999999885 89999999986421100
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC-CCCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA-QPGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~-~~g~~~~~ni~~~ 381 (479)
+. . .......+..+|+|.+++.++.... ..|+ ++++.++
T Consensus 213 ---------------------------~~----~--~~~~~~~~~pedvA~~v~~L~s~~~~~tG~--~i~vdGG 252 (613)
T 3oml_A 213 ---------------------------GI----L--PDILFNELKPKLIAPVVAYLCHESCEDNGS--YIESAAG 252 (613)
T ss_dssp ---------------------------CC----C--CHHHHTTCCGGGTHHHHHHTTSTTCCCCSC--EEEEETT
T ss_pred ---------------------------hc----c--chhhhhcCCHHHHHHHHHHhcCCCcCCCce--EEEECCC
Confidence 00 0 0112344578999999998887652 1344 8887654
|
| >2o2s_A Enoyl-acyl carrier reductase; enoyl reductase, triclosan, rossmann fold, oxidoreductase; HET: NAD TCL; 2.60A {Toxoplasma gondii} PDB: 2o50_A 3nj8_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.1e-17 Score=162.78 Aligned_cols=246 Identities=15% Similarity=0.088 Sum_probs=148.5
Q ss_pred CCCCcEEEEEcC--CchhhHHHHHHHHhCCCeEEEEeccccccccc-ccCCCCCCccchhhhhhhhhccc-CCCceeEEE
Q 011707 83 PSKAKRVMIIGG--DGYCGWATALHLSNKGYEVAIVDSLIRRLFDH-QLGLDSLTPIASIHDRLRCWKSL-TGKNIELYI 158 (479)
Q Consensus 83 ~~~~~~vLVtGa--tG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~ 158 (479)
.+++|++||||| +|+||.+++++|+++|++|++++|........ ...... + +....+... ....+.++.
T Consensus 6 ~l~gk~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~------~-~~~~~~~~~~~~~~~~~~~ 78 (315)
T 2o2s_A 6 DLRGQTAFVAGVADSHGYGWAIAKHLASAGARVALGTWPPVLGLFQKSLQSGR------L-DEDRKLPDGSLIEFAGVYP 78 (315)
T ss_dssp CCTTCEEEEECCSSSSSHHHHHHHHHHTTTCEEEEEECHHHHHHHHHHHHHTT------T-HHHHBCTTSCBCCCSCEEE
T ss_pred cCCCCEEEEeCCCCCCChHHHHHHHHHHCCCEEEEEecccccchhhhhhhhhh------h-hhhhhhhcccccccccccc
Confidence 357899999999 89999999999999999999998642100000 000000 0 000011000 000123333
Q ss_pred ------------cccCC--------hHHHHHHhhhc-----CCCEEEEcccccC---cccccccccccchhhhhhHHHHH
Q 011707 159 ------------GDICD--------FEFLSESFKSF-----EPDAVVHFGEQRS---APYSMIDRSRAVFTQHNNVIGTL 210 (479)
Q Consensus 159 ------------~Dl~d--------~~~~~~~~~~~-----~~D~Vih~A~~~~---~~~~~~~~~~~~~~~~~Nv~g~~ 210 (479)
+|++| .++++++++.. ++|+||||||... .+....+++++..++++|+.|+.
T Consensus 79 ~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~~~N~~g~~ 158 (315)
T 2o2s_A 79 LDAAFDKPEDVPQDIKDNKRYAGVDGYTIKEVAVKVKQDLGNIDILVHSLANGPEVTKPLLETSRKGYLAASSNSAYSFV 158 (315)
T ss_dssp CCTTCSSTTSSCHHHHTCGGGSSCCCCSHHHHHHHHHHHHCSEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHH
T ss_pred ccccccccchhhhhhhcccccccCCHHHHHHHHHHHHHhcCCCCEEEECCccCCcCCCCcccCCHHHHHHHHhhhhHHHH
Confidence 34443 44555555432 6999999999642 22233456678889999999999
Q ss_pred HHHHHHHHcC-CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCC-chhhhhhHHHHHHHHHHHHH----
Q 011707 211 NVLFAMKEFR-QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS-SFYHLSKVHDSHNIAFTCKA---- 284 (479)
Q Consensus 211 ~ll~~a~~~g-~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~~~E~~~~~~~~~---- 284 (479)
++++++...- .+.+||++||...+.. .... ..|+.||++.+.+++.++.+
T Consensus 159 ~l~~~~~~~m~~~g~Iv~isS~~~~~~------------------------~~~~~~~Y~asKaal~~l~~~la~el~~~ 214 (315)
T 2o2s_A 159 SLLQHFGPIMNEGGSAVTLSYLAAERV------------------------VPGYGGGMSSAKAALESDTRTLAWEAGQK 214 (315)
T ss_dssp HHHHHHSTTEEEEEEEEEEEEGGGTSC------------------------CTTCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEeccccccc------------------------CCCccHHHHHHHHHHHHHHHHHHHHhCcc
Confidence 9999996541 1139999999654321 1113 47999999999999988876
Q ss_pred hCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHH
Q 011707 285 WGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAI 364 (479)
Q Consensus 285 ~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~ 364 (479)
+|+++++|+||.|..+... .... ... ......+...+....+ ...+...+|+|++++.++
T Consensus 215 ~gIrvn~v~PG~v~T~~~~------~~~~--~~~---~~~~~~~~~~~~~~~p---------~~r~~~pedvA~~v~~L~ 274 (315)
T 2o2s_A 215 YGVRVNAISAGPLKSRAAS------AIGK--SGE---KSFIDYAIDYSYNNAP---------LRRDLHSDDVGGAALFLL 274 (315)
T ss_dssp TCCEEEEEEECCCCCHHHH------HTTC--SSS---SCHHHHHHHHHHHHSS---------SCCCCCHHHHHHHHHHHT
T ss_pred cCeEEEEEecccccchhhh------hccc--ccc---chhHHHHHHHHhccCC---------CCCCCCHHHHHHHHHHHh
Confidence 4899999999998654210 0000 000 0011111111111111 123568999999999988
Q ss_pred hCCCC--CCCceEEEeCCC
Q 011707 365 ANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 365 ~~~~~--~g~~~~~ni~~~ 381 (479)
..... .|+ ++.+.++
T Consensus 275 s~~~~~itG~--~i~vdGG 291 (315)
T 2o2s_A 275 SPLARAVSGV--TLYVDNG 291 (315)
T ss_dssp SGGGTTCCSC--EEEESTT
T ss_pred CchhccCcCC--EEEECCC
Confidence 75333 354 8888776
|
| >2ptg_A Enoyl-acyl carrier reductase; apicomplexa, enoyl (acyl-carrier-P reductase, oxidoreductase; 2.60A {Eimeria tenella} | Back alignment and structure |
|---|
Probab=99.76 E-value=8e-18 Score=164.11 Aligned_cols=251 Identities=12% Similarity=0.028 Sum_probs=132.7
Q ss_pred CCCCcEEEEEcC--CchhhHHHHHHHHhCCCeEEEEecccc------cccccccCCCCCCccc--hhhhhhhhhcccCC-
Q 011707 83 PSKAKRVMIIGG--DGYCGWATALHLSNKGYEVAIVDSLIR------RLFDHQLGLDSLTPIA--SIHDRLRCWKSLTG- 151 (479)
Q Consensus 83 ~~~~~~vLVtGa--tG~iG~~l~~~Ll~~G~~V~~~dr~~~------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~- 151 (479)
.+++|++||||| +|+||.+++++|+++|++|++++|... ..... .......+. ...+..+.+.....
T Consensus 6 ~l~~k~~lVTGa~~s~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (319)
T 2ptg_A 6 DLRGKTAFVAGVADSNGYGWAICKLLRAAGARVLVGTWPPVYSIFKKGLESS--RFEQDSFYAQEPSSKVAAEAAEKPVD 83 (319)
T ss_dssp CCTTCEEEEECCCCTTSHHHHHHHHHHHTTCEEEEEECHHHHHHHHC---------------------------------
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEEEeccccccchhhhhhhh--hhhhhhhhhcchhhhHHHHhhhcccc
Confidence 356899999999 899999999999999999999986420 00000 000000000 00000111110000
Q ss_pred -CceeEEEc------------ccCC--------hHHHHHHhhhc-----CCCEEEEcccccC---cccccccccccchhh
Q 011707 152 -KNIELYIG------------DICD--------FEFLSESFKSF-----EPDAVVHFGEQRS---APYSMIDRSRAVFTQ 202 (479)
Q Consensus 152 -~~v~~v~~------------Dl~d--------~~~~~~~~~~~-----~~D~Vih~A~~~~---~~~~~~~~~~~~~~~ 202 (479)
....++.+ |++| .++++++++.. ++|+||||||... .+....+.+++..++
T Consensus 84 ~~~~~~~~~d~~~~~~~~~~~Dv~~~~~~~~~d~~~v~~~~~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~ 163 (319)
T 2ptg_A 84 LVFDKIYPLDAVFDTPQDVPPEVSSNKRYAGVGGFTISEVAEAVRADVGQIDILVHSLANGPEVTKPLLQTSRKGYLAAV 163 (319)
T ss_dssp -CCSEEEECCTTCCSGGGSCHHHHCC--CTTSCCCSHHHHHHHHHHHHSCEEEEEEEEECCSSSSSCGGGCCHHHHHHHH
T ss_pred ccccccccccccccccccccchhcccccccccCHHHHHHHHHHHHHHcCCCCEEEECCccCCCCCCccccCCHHHHHHHH
Confidence 01233333 3333 33555555432 6999999999642 122334566788899
Q ss_pred hhhHHHHHHHHHHHHHcC-CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCC-chhhhhhHHHHHHHHH
Q 011707 203 HNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS-SFYHLSKVHDSHNIAF 280 (479)
Q Consensus 203 ~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~-~~Y~~sK~~~E~~~~~ 280 (479)
++|+.|+.++++++...- .+.+||++||...+.. .... ..|+.||++.+.+++.
T Consensus 164 ~vN~~g~~~l~~~~~~~m~~~g~Iv~isS~~~~~~------------------------~~~~~~~Y~asKaal~~l~~~ 219 (319)
T 2ptg_A 164 SSSSYSFVSLLQHFLPLMKEGGSALALSYIASEKV------------------------IPGYGGGMSSAKAALESDCRT 219 (319)
T ss_dssp HHHTHHHHHHHHHHGGGEEEEEEEEEEEECC------------------------------------------THHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHhcCceEEEEeccccccc------------------------cCccchhhHHHHHHHHHHHHH
Confidence 999999999999997641 1139999999653311 1123 5799999999999998
Q ss_pred HHHH----hCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHH
Q 011707 281 TCKA----WGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDT 356 (479)
Q Consensus 281 ~~~~----~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dv 356 (479)
++.+ +|+++++|+||.|..+...... ......+..... ..+........+...+|+
T Consensus 220 la~el~~~~gIrvn~v~PG~v~T~~~~~~~---------------~~~~~~~~~~~~-----~~~~~~~p~~r~~~peev 279 (319)
T 2ptg_A 220 LAFEAGRARAVRVNCISAGPLKSRAASAIG---------------KAGDKTFIDLAI-----DYSEANAPLQKELESDDV 279 (319)
T ss_dssp HHHHHHHHHCCEEEEEEECCCC---------------------------------------------------CCCHHHH
T ss_pred HHHHhccccCeeEEEEeeCCccChhhhhcc---------------cccchhhHHHHH-----HHHhccCCCCCCCCHHHH
Confidence 8876 4899999999998766321100 000000000000 000000112246789999
Q ss_pred HHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 357 VQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 357 a~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
|++++.++..... .|+ ++.+.++
T Consensus 280 A~~v~~L~s~~~~~itG~--~i~vdGG 304 (319)
T 2ptg_A 280 GRAALFLLSPLARAVTGA--TLYVDNG 304 (319)
T ss_dssp HHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred HHHHHHHhCcccCCccCC--EEEECCC
Confidence 9999999875333 454 8888875
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=168.13 Aligned_cols=176 Identities=12% Similarity=0.107 Sum_probs=124.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC-------eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEE
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY-------EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYI 158 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~-------~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 158 (479)
.|+|+||||+||||++++..|+.+|+ +|+++|+...... .......+. ...+.++
T Consensus 4 ~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~~~~~~--------------~~g~~~dl~---~~~~~~~- 65 (327)
T 1y7t_A 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKA--------------LEGVVMELE---DCAFPLL- 65 (327)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHH--------------HHHHHHHHH---TTTCTTE-
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCCCchhh--------------ccchhhhhh---ccccccc-
Confidence 46899999999999999999999986 8999987531000 000011111 1122333
Q ss_pred cccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccc-cccC
Q 011707 159 GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMG-EYGT 236 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~-v~g~ 236 (479)
+|+++.+.+.++++ ++|+|||+||....+. .+ ....+++|+.++.++++++++.+ .+.+|+++|+.. +..
T Consensus 66 ~di~~~~~~~~a~~--~~D~Vih~Ag~~~~~~--~~---~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~~~~~- 137 (327)
T 1y7t_A 66 AGLEATDDPKVAFK--DADYALLVGAAPRKAG--ME---RRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPANTNA- 137 (327)
T ss_dssp EEEEEESCHHHHTT--TCSEEEECCCCCCCTT--CC---HHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHH-
T ss_pred CCeEeccChHHHhC--CCCEEEECCCcCCCCC--CC---HHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCchhhhH-
Confidence 68877777888888 8999999999764331 22 24568999999999999999986 655788777632 110
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCC
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT 302 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~ 302 (479)
+..++ .. ....|.+.|+.+|+.+|++...+++.+|++++++|+++||||..
T Consensus 138 ---~~~~~-----------~~-~~~~p~~~yg~tkl~~er~~~~~a~~~g~~~~~vr~~~V~G~h~ 188 (327)
T 1y7t_A 138 ---LIAYK-----------NA-PGLNPRNFTAMTRLDHNRAKAQLAKKTGTGVDRIRRMTVWGNHS 188 (327)
T ss_dssp ---HHHHH-----------TC-TTSCGGGEEECCHHHHHHHHHHHHHHHTCCGGGEECCEEEBCSS
T ss_pred ---HHHHH-----------Hc-CCCChhheeccchHHHHHHHHHHHHHhCcChhheeeeEEEcCCC
Confidence 11110 00 01234677999999999999999999999999999999999975
|
| >3lt0_A Enoyl-ACP reductase; triclosan, triclosan variant, oxidoredu P.falciparum; HET: NAD FT1; 1.96A {Plasmodium falciparum} SCOP: c.2.1.2 PDB: 1v35_A* 3lsy_A* 1uh5_A* 3lt1_A* 3lt2_A* 3lt4_A* 3am4_A* 3am3_A* 3am5_A* 2o2y_A* 2oos_A* 2ol4_A* 2op0_A* 2op1_A* 1vrw_A* 1zsn_A* 1zw1_A* 1zxb_A* 1zxl_A* 2foi_A* ... | Back alignment and structure |
|---|
Probab=99.74 E-value=4e-17 Score=159.78 Aligned_cols=183 Identities=9% Similarity=0.001 Sum_probs=125.4
Q ss_pred CcEEEEEcCCc--hhhHHHHHHHHhCCCeEEEEeccccc---ccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 86 AKRVMIIGGDG--YCGWATALHLSNKGYEVAIVDSLIRR---LFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 86 ~~~vLVtGatG--~iG~~l~~~Ll~~G~~V~~~dr~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
+|++|||||++ +||.+++++|+++|++|++.++.... ..+.. .... . .............+.++.+|
T Consensus 2 ~k~~lITGas~~~GIG~aiA~~la~~G~~Vv~~~~~~~~~l~~r~~~-~~~~------~-~~~~~~~~~~~~~~~~~~~D 73 (329)
T 3lt0_A 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYK-NGKF------D-NDMIIDKDKKMNILDMLPFD 73 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHHH-TTTT------T-GGGBCSSSCBCCEEEEEECC
T ss_pred CcEEEEECCCCCCchHHHHHHHHHHCCCEEEEEecCccccccccchH-HHHH------H-HHHHHhhccccccccccccc
Confidence 68999999975 99999999999999999987754310 00000 0000 0 00000000111346778888
Q ss_pred cCCh--H------------------HHHHHhhhc-----CCCEEEEcccccC---cccccccccccchhhhhhHHHHHHH
Q 011707 161 ICDF--E------------------FLSESFKSF-----EPDAVVHFGEQRS---APYSMIDRSRAVFTQHNNVIGTLNV 212 (479)
Q Consensus 161 l~d~--~------------------~~~~~~~~~-----~~D~Vih~A~~~~---~~~~~~~~~~~~~~~~~Nv~g~~~l 212 (479)
+++. + ++.++++.. ++|++|||||+.. .+....+++++..++++|+.|+.++
T Consensus 74 v~~~~~~~~~~~~~~~~~~Dlsd~~~v~~~~~~~~~~~g~iDilVnnAGi~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l 153 (329)
T 3lt0_A 74 ASFDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISL 153 (329)
T ss_dssp TTCSSGGGCCHHHHTSHHHHTCCSCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHH
T ss_pred ccccchhhhhhhhcccccccccCHHHHHHHHHHHHHhcCCCcEEEECCcccccCCCCcccCCHHHHHHHHHHHhHHHHHH
Confidence 8776 6 666666543 6999999999642 2333446677889999999999999
Q ss_pred HHHHHHcC-CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCc-hhhhhhHHHHHHHHHHHHH----hC
Q 011707 213 LFAMKEFR-QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASS-FYHLSKVHDSHNIAFTCKA----WG 286 (479)
Q Consensus 213 l~~a~~~g-~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~-~Y~~sK~~~E~~~~~~~~~----~g 286 (479)
.+++...- .+.+||++||...+. +..... .|+.||++.+.+++.++.+ +|
T Consensus 154 ~~~~~p~m~~~g~Iv~isS~~~~~------------------------~~~~~~~~Y~asKaal~~~~~~la~el~~~~g 209 (329)
T 3lt0_A 154 CKYFVNIMKPQSSIISLTYHASQK------------------------VVPGYGGGMSSAKAALESDTRVLAYHLGRNYN 209 (329)
T ss_dssp HHHHGGGEEEEEEEEEEECGGGTS------------------------CCTTCTTTHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhCCeEEEEeCccccC------------------------CCCcchHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 99986531 113899999964331 112243 8999999999999988876 48
Q ss_pred CceEEeecCeeecC
Q 011707 287 IRATDLNQGVVYGV 300 (479)
Q Consensus 287 l~~~ivRp~~v~Gp 300 (479)
++++++.||.|..+
T Consensus 210 I~vn~v~PG~v~T~ 223 (329)
T 3lt0_A 210 IRINTISAGPLKSR 223 (329)
T ss_dssp CEEEEEEECCCCCH
T ss_pred eEEEEEecceeech
Confidence 99999999988644
|
| >3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase, epimerization, oxidoreductase; 1.88A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=172.00 Aligned_cols=241 Identities=13% Similarity=0.065 Sum_probs=157.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeE-EEE-ecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEV-AIV-DSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V-~~~-dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..++++|||||+|+||.++++.|+++|+++ +++ +|............ .......+..+.+.. .+.++.++.+|+
T Consensus 249 ~~~~~vLITGgsgGIG~~lA~~La~~G~~~vvl~~~R~~~~~~~~~~~~---~~~~~~~~~~~~l~~-~g~~v~~~~~Dv 324 (525)
T 3qp9_A 249 QADGTVLVTGAEEPAAAEAARRLARDGAGHLLLHTTPSGSEGAEGTSGA---AEDSGLAGLVAELAD-LGATATVVTCDL 324 (525)
T ss_dssp CTTSEEEESSTTSHHHHHHHHHHHHHTCCEEEEEECCCC------------------CHHHHHHHHH-HTCEEEEEECCT
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCCEEEEEeCCCCCCcccccccc---ccCHHHHHHHHHHHh-cCCEEEEEECCC
Confidence 368899999999999999999999999984 444 56432100000000 000011122222222 245799999999
Q ss_pred CChHHHHHHhhhc----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcC-----CcceEEEeecc
Q 011707 162 CDFEFLSESFKSF----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-----QECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-----~~~~~V~~SS~ 231 (479)
+|.+++.++++.. .+|+||||||...... ...+++++..++++|+.|+.++.+++.... .+ +||++||.
T Consensus 325 td~~~v~~~~~~i~~~g~id~vVh~AGv~~~~~~~~~~~~~~~~v~~~nv~g~~~L~~~~~~~~~~~~~~~-~iV~~SS~ 403 (525)
T 3qp9_A 325 TDAEAAARLLAGVSDAHPLSAVLHLPPTVDSEPLAATDADALARVVTAKATAALHLDRLLREAAAAGGRPP-VLVLFSSV 403 (525)
T ss_dssp TSHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHTC----CCC-EEEEEEEG
T ss_pred CCHHHHHHHHHHHHhcCCCcEEEECCcCCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHhccccccCCCCC-EEEEECCH
Confidence 9999999999853 5899999999865432 234666788899999999999999998765 45 89999994
Q ss_pred -ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHh
Q 011707 232 -GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 232 -~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+++|.+ ....|+.+|+..+.+...+. ..|+++++|.||.+-.+...
T Consensus 404 a~~~g~~-------------------------g~~~YaaaKa~l~~lA~~~~-~~gi~v~sI~pG~~~tgm~~------- 450 (525)
T 3qp9_A 404 AAIWGGA-------------------------GQGAYAAGTAFLDALAGQHR-ADGPTVTSVAWSPWEGSRVT------- 450 (525)
T ss_dssp GGTTCCT-------------------------TCHHHHHHHHHHHHHHTSCC-SSCCEEEEEEECCBTTSGGG-------
T ss_pred HHcCCCC-------------------------CCHHHHHHHHHHHHHHHHHH-hCCCCEEEEECCcccccccc-------
Confidence 444432 36899999999998865443 34899999999998222100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHH
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAA 390 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~ 390 (479)
...... .+... -...+..+++++++..++..+... +. + ..+.|..+..
T Consensus 451 -----------~~~~~~---~~~~~-----------g~~~l~pee~a~~l~~~l~~~~~~----v~-v--~~~dw~~~~~ 498 (525)
T 3qp9_A 451 -----------EGATGE---RLRRL-----------GLRPLAPATALTALDTALGHGDTA----VT-I--ADVDWSSFAP 498 (525)
T ss_dssp -----------SSHHHH---HHHHT-----------TBCCBCHHHHHHHHHHHHHHTCSE----EE-E--CCBCHHHHHH
T ss_pred -----------chhhHH---HHHhc-----------CCCCCCHHHHHHHHHHHHhCCCCe----EE-E--EeCCHHHHHh
Confidence 000111 11111 013478999999999999865321 22 2 2355666665
Q ss_pred HHHH
Q 011707 391 LVTK 394 (479)
Q Consensus 391 ~i~~ 394 (479)
.+..
T Consensus 499 ~~~~ 502 (525)
T 3qp9_A 499 GFTT 502 (525)
T ss_dssp HHHS
T ss_pred hccc
Confidence 5543
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=165.99 Aligned_cols=168 Identities=17% Similarity=0.107 Sum_probs=124.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc-
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI- 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl- 161 (479)
.+++|++|||||+++||.+++++|+++|++|++.++... .+..+.+.. .+.++..+.+|+
T Consensus 319 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~------------------~~~~~~i~~-~g~~~~~~~~Dv~ 379 (604)
T 2et6_A 319 SLKDKVVLITGAGAGLGKEYAKWFAKYGAKVVVNDFKDA------------------TKTVDEIKA-AGGEAWPDQHDVA 379 (604)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEECSSCC------------------HHHHHHHHH-TTCEEEEECCCHH
T ss_pred ccCCCeEEEECcchHHHHHHHHHHHHCCCEEEEEeCccH------------------HHHHHHHHh-cCCeEEEEEcChH
Confidence 467899999999999999999999999999999875210 111122211 134567778888
Q ss_pred CChHH-HHHHhhhc-CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc-cc
Q 011707 162 CDFEF-LSESFKSF-EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM-GE 233 (479)
Q Consensus 162 ~d~~~-~~~~~~~~-~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~-~v 233 (479)
.+.+. ++++.+.+ ++|++|||||+..... ...+++++.+++++|+.|+.++.+++.. .+.+ +||++||. +.
T Consensus 380 ~~~~~~~~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G-~IVnisS~ag~ 458 (604)
T 2et6_A 380 KDSEAIIKNVIDKYGTIDILVNNAGILRDRSFAKMSKQEWDSVQQVHLIGTFNLSRLAWPYFVEKQFG-RIINITSTSGI 458 (604)
T ss_dssp HHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCHHHH
T ss_pred HHHHHHHHHHHHhcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEECChhhc
Confidence 55443 33444433 6999999999764332 2346678899999999999999888743 3444 99999994 33
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecC
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQG 295 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~ 295 (479)
++.+ ....|+.||++...+.+.++.++ |++++.|.||
T Consensus 459 ~~~~-------------------------~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~PG 498 (604)
T 2et6_A 459 YGNF-------------------------GQANYSSSKAGILGLSKTMAIEGAKNNIKVNIVAPH 498 (604)
T ss_dssp SCCT-------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred cCCC-------------------------CChhHHHHHHHHHHHHHHHHHHhCccCeEEEEEcCC
Confidence 4322 26789999999999999999884 8999999997
|
| >3zu3_A Putative reductase YPO4104/Y4119/YP_4011; oxidoreductase, fatty acid biosynthesis II, short-chain dehydrogenase reductase superfamily; HET: NAI; 1.80A {Yersinia pestis} PDB: 3zu4_A* 3zu5_A* 3zu2_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=148.99 Aligned_cols=188 Identities=13% Similarity=-0.025 Sum_probs=128.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHh-CCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSN-KGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~-~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.+|++|||||+++||.++++.|++ +|++|+++++........ ....... ..+.........+..+..+.+|++|
T Consensus 46 ~gKvaLVTGas~GIG~AiA~~LA~g~GA~Vv~~~~~~~~~~~~---~~~~gwy--n~~~~~~~~~~~G~~a~~i~~Dvtd 120 (405)
T 3zu3_A 46 GPKRVLVIGASTGYGLAARITAAFGCGADTLGVFFERPGEEGK---PGTSGWY--NSAAFHKFAAQKGLYAKSINGDAFS 120 (405)
T ss_dssp CCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCBTTB---CCCHHHH--HHHHHHHHHHHTTCCEEEEESCTTS
T ss_pred CCCEEEEeCcchHHHHHHHHHHHHhcCCEEEEEeCCchhhhhh---cccccch--hHHHHHHHHHhcCCceEEEECCCCC
Confidence 479999999999999999999999 999999988754321000 0000000 0001111111124578889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccC-------------c-cc---------------------ccccccccchhhh
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRS-------------A-PY---------------------SMIDRSRAVFTQH 203 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~-------------~-~~---------------------~~~~~~~~~~~~~ 203 (479)
+++++++++.. ++|++|||||... . +. ...+++++.++++
T Consensus 121 ~~~v~~~v~~i~~~~G~IDiLVNNAG~~~r~~p~tG~~~~s~~~pig~~~~~~~~d~~~~~~~~~~i~~~t~ee~~~~v~ 200 (405)
T 3zu3_A 121 DEIKQLTIDAIKQDLGQVDQVIYSLASPRRTHPKTGEVFNSALKPIGNAVNLRGLDTDKEVIKESVLQPATQSEIDSTVA 200 (405)
T ss_dssp HHHHHHHHHHHHHHTSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEcCccccccCccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHH
Confidence 99888877643 6999999999741 1 11 2235667889999
Q ss_pred hhHHHHH-HHHHHHHHcC---CcceEEEeeccccc-cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHH
Q 011707 204 NNVIGTL-NVLFAMKEFR---QECHLVKLGTMGEY-GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNI 278 (479)
Q Consensus 204 ~Nv~g~~-~ll~~a~~~g---~~~~~V~~SS~~v~-g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~ 278 (479)
+|..+.. .+++++...+ .+.++|++||.+.. +. +......|+.+|.+.+.+.
T Consensus 201 Vn~~~~~~~~~~~~~~~~m~~~gG~IVniSSi~~~~~~-----------------------p~~~~~aY~AaKaal~~lt 257 (405)
T 3zu3_A 201 VMGGEDWQMWIDALLDAGVLAEGAQTTAFTYLGEKITH-----------------------DIYWNGSIGAAKKDLDQKV 257 (405)
T ss_dssp HHSSHHHHHHHHHHHHHTCEEEEEEEEEEECCCCGGGT-----------------------TTTTTSHHHHHHHHHHHHH
T ss_pred hhchhHHHHHHHHHHHHhhhhCCcEEEEEeCchhhCcC-----------------------CCccchHHHHHHHHHHHHH
Confidence 9998887 6666654322 12489999995422 11 1112378999999999999
Q ss_pred HHHHHHh----CCceEEeecCeeecC
Q 011707 279 AFTCKAW----GIRATDLNQGVVYGV 300 (479)
Q Consensus 279 ~~~~~~~----gl~~~ivRp~~v~Gp 300 (479)
+.++.++ |++++++-||.|--+
T Consensus 258 rsLA~Ela~~~GIRVNaVaPG~i~T~ 283 (405)
T 3zu3_A 258 LAIRESLAAHGGGDARVSVLKAVVSQ 283 (405)
T ss_dssp HHHHHHHHTTTSCEEEEEECCCCCCH
T ss_pred HHHHHHhCcccCeEEEEEEeCCCcCc
Confidence 9999884 899999999987544
|
| >2et6_A (3R)-hydroxyacyl-COA dehydrogenase; MFE-2, beta-oxidation, peroxisome, SDR, oxido; 2.22A {Candida tropicalis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-15 Score=160.62 Aligned_cols=176 Identities=15% Similarity=0.057 Sum_probs=120.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+++||++++++|+++|++|++.|+....... . .....+.+..+.+... +..+ .+|++
T Consensus 5 ~l~gkvalVTGas~GIG~a~A~~la~~Ga~Vv~~~~~~~~~~~-g------r~~~~~~~~~~~i~~~-g~~~---~~d~~ 73 (604)
T 2et6_A 5 DFKDKVVIITGAGGGLGKYYSLEFAKLGAKVVVNDLGGALNGQ-G------GNSKAADVVVDEIVKN-GGVA---VADYN 73 (604)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECC------------------CHHHHHHHHHHHT-TCEE---EEECC
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHcCCEEEEEeCCcccccc-c------cchHHHHHHHHHHHhc-CCeE---EEEcC
Confidence 3578999999999999999999999999999998875310000 0 0000111112222111 1222 35766
Q ss_pred ChHHHHHHh----hhc-CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc-
Q 011707 163 DFEFLSESF----KSF-EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM- 231 (479)
Q Consensus 163 d~~~~~~~~----~~~-~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~- 231 (479)
|.+++++++ +.+ ++|++|||||+.... ....+.+++++++++|+.|+.++.+++. +.+.+ +||++||.
T Consensus 74 d~~~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~a~~p~m~~~~~G-~IVnisS~a 152 (604)
T 2et6_A 74 NVLDGDKIVETAVKNFGTVHVIINNAGILRDASMKKMTEKDYKLVIDVHLNGAFAVTKAAWPYFQKQKYG-RIVNTSSPA 152 (604)
T ss_dssp CTTCHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHH
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCC-EEEEECCHH
Confidence 664444433 333 699999999976432 2334667889999999999999988774 33445 99999994
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecC
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQG 295 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~ 295 (479)
+.++.+ ....|+.||++...+.+.++.++ |++++.|.|+
T Consensus 153 g~~~~~-------------------------~~~~Y~asKaal~~lt~~la~El~~~gIrVn~v~Pg 194 (604)
T 2et6_A 153 GLYGNF-------------------------GQANYASAKSALLGFAETLAKEGAKYNIKANAIAPL 194 (604)
T ss_dssp HHHCCT-------------------------TBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEEC
T ss_pred HcCCCC-------------------------CchHHHHHHHHHHHHHHHHHHHhCccCeEEEEEccC
Confidence 444432 25789999999999999999884 8999999996
|
| >2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.7e-15 Score=166.49 Aligned_cols=236 Identities=12% Similarity=0.037 Sum_probs=155.5
Q ss_pred CCCCcEEEEEcCCch-hhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhh-ccc--CCCceeEEE
Q 011707 83 PSKAKRVMIIGGDGY-CGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW-KSL--TGKNIELYI 158 (479)
Q Consensus 83 ~~~~~~vLVtGatG~-iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~v~~v~ 158 (479)
.+++|+||||||+|+ ||.+++++|+++|++|+++++..... +.+....+ ..+ .+.++.++.
T Consensus 649 ~L~gKvaLVTGASgGgIG~aIAr~LA~~GA~VVl~~~R~~~~---------------l~~~a~eL~~el~~~G~~v~~v~ 713 (1878)
T 2uv9_A 649 TFQGKHALMTGAGAGSIGAEVLQGLLSGGAKVIVTTSRFSRQ---------------VTEYYQGIYARCGARGSQLVVVP 713 (1878)
T ss_dssp CCTTCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESSCCHH---------------HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCChHH---------------HHHHHHHHHHHhhccCCeEEEEE
Confidence 467899999999999 99999999999999999986432211 11111111 111 135788999
Q ss_pred cccCChHHHHHHhhh-------c--CCCEEEEcccccCcc-c-cccc--ccccchhhhhhHHHHHHHHHHHHHc-----C
Q 011707 159 GDICDFEFLSESFKS-------F--EPDAVVHFGEQRSAP-Y-SMID--RSRAVFTQHNNVIGTLNVLFAMKEF-----R 220 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~-------~--~~D~Vih~A~~~~~~-~-~~~~--~~~~~~~~~~Nv~g~~~ll~~a~~~-----g 220 (479)
+|++|.++++++++. + ++|+||||||+.... . ...+ ++++.+++++|+.|+.+++++++.. .
T Consensus 714 ~DVsd~esV~alv~~i~~~~~~~G~~IDiLVnNAGi~~~~~~l~d~t~~~e~~~~vl~vNv~g~~~l~~a~~~lp~M~~~ 793 (1878)
T 2uv9_A 714 FNQGSKQDVEALVNYIYDTKNGLGWDLDYVVPFAAIPENGREIDSIDSKSELAHRIMLTNLLRLLGAIKTQKKERGYETR 793 (1878)
T ss_dssp CCTTCHHHHHHHHHHHHCSSSSCCCCCSEEEECCCCCCTTCCTTCCCHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCSC
T ss_pred cCCCCHHHHHHHHHHHHHhhcccCCCCcEEEeCcccccCCCChhhcCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhC
Confidence 999999999888763 3 489999999976443 2 2223 4678899999999999998774321 1
Q ss_pred CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH-h--CCceEEeecCee
Q 011707 221 QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA-W--GIRATDLNQGVV 297 (479)
Q Consensus 221 ~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~--gl~~~ivRp~~v 297 (479)
...+||++||...+. + ....|+.+|++.+.+++.+..+ + +++++.|.||.+
T Consensus 794 ~~G~IVnISS~ag~~------------------------g--g~~aYaASKAAL~aLt~~laAeEla~~IrVNaVaPG~V 847 (1878)
T 2uv9_A 794 PAQVILPLSPNHGTF------------------------G--NDGLYSESKLALETLFNRWYSESWGNYLTICGAVIGWT 847 (1878)
T ss_dssp CEEECCEECSCSSSS------------------------S--CCSSHHHHHHHHTTHHHHHHHSTTTTTEEEEEEEECCB
T ss_pred CCCEEEEEcchhhcc------------------------C--CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEecce
Confidence 113899999953221 1 1467999999999998766544 2 399999999998
Q ss_pred e-cCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC---CCCCc
Q 011707 298 Y-GVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA---QPGEF 373 (479)
Q Consensus 298 ~-Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~---~~g~~ 373 (479)
- .+.... ...........++ .+...+|+|.+++.++.... ..|+
T Consensus 848 ~gT~m~~~---------------------~~~~~~~~~~~pl----------r~~sPeEVA~avlfLaSd~a~s~iTGq- 895 (1878)
T 2uv9_A 848 RGTGLMSA---------------------NNLVAEGVEKLGV----------RTFSQQEMAFNLLGLMAPAIVNLCQSD- 895 (1878)
T ss_dssp CCTTSCSH---------------------HHHTHHHHHTTTC----------CCBCHHHHHHHHHHHHSHHHHHHHTTS-
T ss_pred ecCccccc---------------------chhhHHHHHhcCC----------CCCCHHHHHHHHHHHhCCcccccccCc-
Confidence 7 332110 0111111111111 23488999999998886432 1344
Q ss_pred eEEEe--CCC---CcCHHHHHHHH
Q 011707 374 RVFNQ--FTE---QFSVNQLAALV 392 (479)
Q Consensus 374 ~~~ni--~~~---~~s~~el~~~i 392 (479)
++++ .++ ...+.++...+
T Consensus 896 -~I~VDVDGG~~~~~~l~el~~~l 918 (1878)
T 2uv9_A 896 -PVFADLNGGLQFIPDLKGLMTKL 918 (1878)
T ss_dssp -CEEEEESCSGGGCTTHHHHHHHH
T ss_pred -EEEEEcCCCccccCCHHHHHHHH
Confidence 5555 333 35666665544
|
| >3s8m_A Enoyl-ACP reductase; rossmann fold, oxidoreductase, NADH binding, fatty acid SYNT enoyl-ACP; 1.60A {Xanthomonas oryzae PV} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=148.22 Aligned_cols=190 Identities=13% Similarity=-0.059 Sum_probs=126.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHh-CCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSN-KGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~-~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.+|++|||||+++||.++++.|++ +|++|+++++........ ...... .............+..+..+.+|++|
T Consensus 60 ~gKvaLVTGASsGIG~AiA~~LA~~~GA~Vv~~~r~~~~~~~~---~~~ag~--~n~~a~~~~~~~~G~~a~~i~~Dvtd 134 (422)
T 3s8m_A 60 GPKKVLVIGASSGYGLASRITAAFGFGADTLGVFFEKPGTASK---AGTAGW--YNSAAFDKHAKAAGLYSKSINGDAFS 134 (422)
T ss_dssp SCSEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSSS---CCCHHH--HHHHHHHHHHHHTTCCEEEEESCTTS
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhCCCEEEEEeCCchhhhhh---hccccc--chhHHHHHHHHhcCCcEEEEEecCCC
Confidence 378999999999999999999999 999999998754321000 000000 00000101111224578889999999
Q ss_pred hHHHHHHhhh----c--CCCEEEEccccc-------------Cccc----------------------ccccccccchhh
Q 011707 164 FEFLSESFKS----F--EPDAVVHFGEQR-------------SAPY----------------------SMIDRSRAVFTQ 202 (479)
Q Consensus 164 ~~~~~~~~~~----~--~~D~Vih~A~~~-------------~~~~----------------------~~~~~~~~~~~~ 202 (479)
+++++++++. + ++|++|||||.. .... ...+++++.+++
T Consensus 135 ~~~v~~~v~~i~~~~~G~IDiLVNNAG~~~r~~p~~G~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~~v 214 (422)
T 3s8m_A 135 DAARAQVIELIKTEMGGQVDLVVYSLASPVRKLPGSGEVKRSALKPIGQTYTATAIDTNKDTIIQASIEPASAQEIEDTI 214 (422)
T ss_dssp HHHHHHHHHHHHHHSCSCEEEEEECCCCSEEECTTTCCEEECCCCCSSSCEEEEEEETTTTEEEEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCEEEEcCccccccccccccccccccccccccccccccccccccccccccCCCCHHHHHHHH
Confidence 9887776652 2 589999999862 1111 023556777888
Q ss_pred hhhHHHHH-HHHHHHHHcC---CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHH
Q 011707 203 HNNVIGTL-NVLFAMKEFR---QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNI 278 (479)
Q Consensus 203 ~~Nv~g~~-~ll~~a~~~g---~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~ 278 (479)
++|..+.. .+++++...+ .+.+||++||.+-.-. .+......|+.||++.+.+.
T Consensus 215 ~Vn~~~~~~~~~~a~~~~~m~~~gG~IVniSSi~g~~~----------------------~p~~~~~aY~ASKaAl~~lT 272 (422)
T 3s8m_A 215 TVMGGQDWELWIDALEGAGVLADGARSVAFSYIGTEIT----------------------WPIYWHGALGKAKVDLDRTA 272 (422)
T ss_dssp HHHSSHHHHHHHHHHHHTTCEEEEEEEEEEEECCCGGG----------------------HHHHTSHHHHHHHHHHHHHH
T ss_pred HhhchhHHHHHHHHHHHHHHhhCCCEEEEEeCchhhcc----------------------CCCccchHHHHHHHHHHHHH
Confidence 88888775 6666664432 1238999999542210 01111378999999999999
Q ss_pred HHHHHHh---CCceEEeecCeeecCC
Q 011707 279 AFTCKAW---GIRATDLNQGVVYGVR 301 (479)
Q Consensus 279 ~~~~~~~---gl~~~ivRp~~v~Gp~ 301 (479)
+.++.++ |++++++.||.|--+.
T Consensus 273 rsLA~Ela~~GIRVNaVaPG~i~T~~ 298 (422)
T 3s8m_A 273 QRLNARLAKHGGGANVAVLKSVVTQA 298 (422)
T ss_dssp HHHHHHHHTTTCEEEEEEECCCCCTT
T ss_pred HHHHHHhCccCEEEEEEEcCCCcChh
Confidence 9999885 8999999999986654
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.2e-15 Score=159.73 Aligned_cols=175 Identities=20% Similarity=0.185 Sum_probs=132.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHH-hCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLS-NKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll-~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..++++|||||+|+||..+++.|+ ++|+ +|++++|...... ...+..+.+.. .+.++.++.+|+
T Consensus 528 ~~~~~~lItGg~~GlG~aiA~~la~~~Ga~~vvl~~R~~~~~~-------------~~~~~~~~l~~-~G~~v~~~~~Dv 593 (795)
T 3slk_A 528 DAAGTVLVTGGTGALGAEVARHLVIERGVRNLVLVSRRGPAAS-------------GAAELVAQLTA-YGAEVSLQACDV 593 (795)
T ss_dssp CTTSEEEEETTTSHHHHHHHHHHHHTSSCCEEEEEESSGGGST-------------THHHHHHHHHH-TTCEEEEEECCT
T ss_pred ccccceeeccCCCCcHHHHHHHHHHHcCCcEEEEeccCccchH-------------HHHHHHHHHHh-cCCcEEEEEeec
Confidence 358899999999999999999999 7898 4888887633110 11122222222 246799999999
Q ss_pred CChHHHHHHhhhc----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecc-cccc
Q 011707 162 CDFEFLSESFKSF----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTM-GEYG 235 (479)
Q Consensus 162 ~d~~~~~~~~~~~----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~-~v~g 235 (479)
+|.++++++++.. .+|+||||||+..... ...+.+++..++++|+.|+.++.+++... - +||++||. ++.|
T Consensus 594 sd~~~v~~~~~~~~~~~~id~lVnnAGv~~~~~~~~~t~e~~~~~~~~nv~G~~~l~~~~~~~--l-~iV~~SS~ag~~g 670 (795)
T 3slk_A 594 ADRETLAKVLASIPDEHPLTAVVHAAGVLDDGVSESLTVERLDQVLRPKVDGARNLLELIDPD--V-ALVLFSSVSGVLG 670 (795)
T ss_dssp TCHHHHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHHCCCCCHHHHHHHHSCTT--S-EEEEEEETHHHHT
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHhhC--C-EEEEEccHHhcCC
Confidence 9999999998754 5899999999865432 33466788999999999999999988332 2 89999994 4555
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCC
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVR 301 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~ 301 (479)
.+. +..|+.+|...+.+.+.+. ..|++++.+-||.+-.++
T Consensus 671 ~~g-------------------------~~~YaAaka~~~alA~~~~-~~Gi~v~sI~pG~v~t~g 710 (795)
T 3slk_A 671 SGG-------------------------QGNYAAANSFLDALAQQRQ-SRGLPTRSLAWGPWAEHG 710 (795)
T ss_dssp CSS-------------------------CHHHHHHHHHHHHHHHHHH-HTTCCEEEEEECCCSCCC
T ss_pred CCC-------------------------CHHHHHHHHHHHHHHHHHH-HcCCeEEEEECCeECcch
Confidence 432 7899999998888877654 459999999999886553
|
| >4eue_A Putative reductase CA_C0462; TER, biofuel, synthetic biology, catalytic mechan substrate specificity, oxidoreductase; HET: NAI; 2.00A {Clostridium acetobutylicum} PDB: 4euf_A* 4euh_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-14 Score=142.83 Aligned_cols=189 Identities=12% Similarity=-0.034 Sum_probs=127.1
Q ss_pred CCCcEEEEEcCCchhhHH--HHHHHHhCCCeEEEEecccccccccccCCCCCCc-cchhhhhhhhhcccCCCceeEEEcc
Q 011707 84 SKAKRVMIIGGDGYCGWA--TALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTP-IASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~--l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
..+|++|||||+++||.+ +++.|+++|++|+++++....... .... .-...+.+.......+..+..+.+|
T Consensus 58 ~~gK~aLVTGassGIG~A~aia~ala~~Ga~Vi~~~r~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D 131 (418)
T 4eue_A 58 RGPKKVLIVGASSGFGLATRISVAFGGPEAHTIGVSYETGATDR------RIGTAGWYNNIFFKEFAKKKGLVAKNFIED 131 (418)
T ss_dssp CCCSEEEEESCSSHHHHHHHHHHHHSSSCCEEEEEECCCCCCSS------CCCCHHHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHHhCCCEEEEEecCcchhhh------cccccccchHHHHHHHHHHcCCcEEEEEee
Confidence 468999999999999999 999999999999999875432100 0000 0000111222222234578899999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEccccc-------------Cccc----------------------ccccccccch
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQR-------------SAPY----------------------SMIDRSRAVF 200 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~-------------~~~~----------------------~~~~~~~~~~ 200 (479)
++|.++++++++.. ++|++|||||.. .... ...+++++..
T Consensus 132 vtd~~~v~~~v~~i~~~~G~IDiLVnNAG~~~r~~~~~g~~~~s~~~p~~~~~~~~~~d~~~~~~~~~~~~~~t~e~~~~ 211 (418)
T 4eue_A 132 AFSNETKDKVIKYIKDEFGKIDLFVYSLAAPRRKDYKTGNVYTSRIKTILGDFEGPTIDVERDEITLKKVSSASIEEIEE 211 (418)
T ss_dssp TTCHHHHHHHHHHHHHTTCCEEEEEECCCCSEEECTTTCCEEECCCCBSSSCEEEEEEETTTTEEEEEEECBCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEECCcccccccccccccccccccccccccccccccccccccccccccCCCHHHHHH
Confidence 99999888877643 689999999973 1100 1124556677
Q ss_pred hhhhhHHHHH-HHHHHHHHcCC---cceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHH
Q 011707 201 TQHNNVIGTL-NVLFAMKEFRQ---ECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSH 276 (479)
Q Consensus 201 ~~~~Nv~g~~-~ll~~a~~~g~---~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~ 276 (479)
++++|..+.. .+++++...+. +.++|++||.+-... .|......|+.||++.+.
T Consensus 212 ~~~vn~~~~~~~~~~~l~~~~~~~~gg~IV~iSSi~~~~~----------------------~p~~~~~aY~ASKaAL~~ 269 (418)
T 4eue_A 212 TRKVMGGEDWQEWCEELLYEDCFSDKATTIAYSYIGSPRT----------------------YKIYREGTIGIAKKDLED 269 (418)
T ss_dssp HHHHHSSHHHHHHHHHHHHTTCEEEEEEEEEEECCCCGGG----------------------TTTTTTSHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhcCCcEEEEEeCchhcCC----------------------CCccccHHHHHHHHHHHH
Confidence 7888877766 56666554321 248999998542210 121223889999999999
Q ss_pred HHHHHHHH----hCCceEEeecCeeecC
Q 011707 277 NIAFTCKA----WGIRATDLNQGVVYGV 300 (479)
Q Consensus 277 ~~~~~~~~----~gl~~~ivRp~~v~Gp 300 (479)
+.+.++.+ .|++++++.||.|--+
T Consensus 270 ltrsLA~ELa~~~GIrVN~V~PG~v~T~ 297 (418)
T 4eue_A 270 KAKLINEKLNRVIGGRAFVSVNKALVTK 297 (418)
T ss_dssp HHHHHHHHHHHHHSCEEEEEECCCCCCH
T ss_pred HHHHHHHHhCCccCeEEEEEECCcCcCh
Confidence 99998876 5899999999987543
|
| >2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=164.96 Aligned_cols=176 Identities=15% Similarity=0.137 Sum_probs=129.0
Q ss_pred CCCCcEEEEEcCCch-hhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhh-ccc--CCCceeEEE
Q 011707 83 PSKAKRVMIIGGDGY-CGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW-KSL--TGKNIELYI 158 (479)
Q Consensus 83 ~~~~~~vLVtGatG~-iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~v~~v~ 158 (479)
.+++|++|||||+|+ ||.++++.|+++|++|+++++..... ..+..+.+ ... .+.++.++.
T Consensus 672 ~l~gKvaLVTGASsGgIG~aIA~~La~~GA~Vvl~~~R~~~~---------------l~~~~~eL~~~~~~~g~~v~~v~ 736 (1887)
T 2uv8_A 672 TFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQ---------------VTDYYQSIYAKYGAKGSTLIVVP 736 (1887)
T ss_dssp CCTTCEEEEESCCSSSHHHHHHHHHHHTTCEEEEEESSCCHH---------------HHHHHHHHHHHHCCTTCEEEEEE
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCCHHH---------------HHHHHHHHHHHhhcCCCeEEEEE
Confidence 467899999999998 99999999999999999985432211 11111111 111 135788999
Q ss_pred cccCChHHHHHHhhh---------c--CCCEEEEcccccCcc-c-cccc--ccccchhhhhhHHHHHHHHHHHHHcC---
Q 011707 159 GDICDFEFLSESFKS---------F--EPDAVVHFGEQRSAP-Y-SMID--RSRAVFTQHNNVIGTLNVLFAMKEFR--- 220 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~---------~--~~D~Vih~A~~~~~~-~-~~~~--~~~~~~~~~~Nv~g~~~ll~~a~~~g--- 220 (479)
+|++|.++++++++. + ++|+||||||+.... . ...+ .+++.+++++|+.|+.+++++++...
T Consensus 737 ~DVsd~~sV~alv~~i~~~~~~~G~G~~LDiLVNNAGi~~~~~~l~d~t~~~e~~~~v~~vNv~g~~~l~~a~~~lp~m~ 816 (1887)
T 2uv8_A 737 FNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGIE 816 (1887)
T ss_dssp CCTTCHHHHHHHHHHHHSCTTTTSCCCCCSEEEECCCCCCCSBCGGGCCHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCC
T ss_pred ecCCCHHHHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCcchHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 999999999888763 2 499999999976543 2 2223 56788999999999999999884322
Q ss_pred --CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHH-HHHHHHHhC--CceEEeecC
Q 011707 221 --QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHN-IAFTCKAWG--IRATDLNQG 295 (479)
Q Consensus 221 --~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~-~~~~~~~~g--l~~~ivRp~ 295 (479)
...+||++||...+. + ....|+.||++.+.+ .+.++.+++ ++++++.||
T Consensus 817 ~~~~G~IVnISS~ag~~------------------------g--g~~aYaASKAAL~~Lttr~lA~ela~~IrVNaV~PG 870 (1887)
T 2uv8_A 817 TRPAQVILPMSPNHGTF------------------------G--GDGMYSESKLSLETLFNRWHSESWANQLTVCGAIIG 870 (1887)
T ss_dssp SCCEEEEEEECSCTTCS------------------------S--CBTTHHHHHHHGGGHHHHHHHSSCTTTEEEEEEEEC
T ss_pred hCCCCEEEEEcChHhcc------------------------C--CCchHHHHHHHHHHHHHHHHHHHhCCCeEEEEEEec
Confidence 113899999953221 1 246899999999998 666666554 999999999
Q ss_pred eeec
Q 011707 296 VVYG 299 (479)
Q Consensus 296 ~v~G 299 (479)
.|.|
T Consensus 871 ~V~t 874 (1887)
T 2uv8_A 871 WTRG 874 (1887)
T ss_dssp CEEC
T ss_pred cccc
Confidence 9985
|
| >2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.8e-15 Score=165.05 Aligned_cols=178 Identities=15% Similarity=0.127 Sum_probs=126.7
Q ss_pred CCCCCcEEEEEcCCch-hhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhc-cc--CCCceeEE
Q 011707 82 DPSKAKRVMIIGGDGY-CGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK-SL--TGKNIELY 157 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~-iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~v~~v 157 (479)
..+++|++|||||+|+ ||.++++.|+++|++|+++++..... +.+..+.+. .. .+.++.++
T Consensus 472 msL~GKvALVTGASgGGIGrAIAr~LA~~GA~VVL~~~R~~e~---------------lee~a~eL~ael~a~Ga~V~vV 536 (1688)
T 2pff_A 472 VTFKDKYVLITGAGKGSIGAEVLQGLLQGGAKVVVTTSRFSKQ---------------VTDYYQSIYAKYGAKGSTLIVV 536 (1688)
T ss_dssp CCCCSCCEEECSCSSSSTHHHHHHHHHHHTCEEEEEESSCSTT---------------TTTHHHHTTTTTCCTTCEEEEE
T ss_pred cccCCCEEEEECCChHHHHHHHHHHHHHCcCEEEEEeCCCHHH---------------HHHHHHHHHHHhhcCCCeEEEE
Confidence 3467899999999998 99999999999999999885332210 001111111 11 13478899
Q ss_pred EcccCChHHHHHHhhh---------c--CCCEEEEcccccCcc-c-cccc--ccccchhhhhhHHHHHHHHHHHHHc---
Q 011707 158 IGDICDFEFLSESFKS---------F--EPDAVVHFGEQRSAP-Y-SMID--RSRAVFTQHNNVIGTLNVLFAMKEF--- 219 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~---------~--~~D~Vih~A~~~~~~-~-~~~~--~~~~~~~~~~Nv~g~~~ll~~a~~~--- 219 (479)
.+|++|.++++++++. + ++|+||||||+.... . ...+ ++++.+++++|+.|+.+++++++..
T Consensus 537 ~~DVTD~esVeaLVe~I~e~~~~~GfG~~IDILVNNAGI~~~g~~l~dlt~s~Ed~~rv~~VNL~G~~~Ltqaa~~lp~M 616 (1688)
T 2pff_A 537 PFNQGSKQDVEALIEFIYDTEKNGGLGWDLDAIIPFAAIPEQGIELEHIDSKSEFAHRIMLTNILRMMGCVKKQKSARGI 616 (1688)
T ss_dssp ECCSSSTTHHHHHHHHHHSCTTSSSCCCCCCEEECCCCCCCCSBCSSSCTTHHHHHHHHTTHHHHHHHHHHHHHHHHHTC
T ss_pred EeCCCCHHHHHHHHHHHHHhccccccCCCCeEEEECCCcCCCCCChhhCCCCHHHHHHHHHHHHHHHHHHHHHHHhChHH
Confidence 9999999998888753 2 489999999975433 1 2223 5678889999999999999988331
Q ss_pred --CCcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHH-HHHHHHHhC--CceEEeec
Q 011707 220 --RQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHN-IAFTCKAWG--IRATDLNQ 294 (479)
Q Consensus 220 --g~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~-~~~~~~~~g--l~~~ivRp 294 (479)
....+||++||..... + ....|+.||++.+.+ .+.++++++ ++++.+.|
T Consensus 617 ~krggGrIVnISSiAG~~------------------------G--g~saYaASKAAL~aLttrsLAeEla~~IRVNaVaP 670 (1688)
T 2pff_A 617 ETRPAQVILPMSPNHGTF------------------------G--GDGMYSESKLSLETLFNRWHSESWANQLTVCGAII 670 (1688)
T ss_dssp TTSCEEECCCCCSCTTTS------------------------S--CBTTHHHHHHHHTHHHHHTTTSSCTTTEECCCCCC
T ss_pred HhCCCCEEEEEEChHhcc------------------------C--CchHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEEE
Confidence 1113899999953221 1 246899999999998 454454443 89999999
Q ss_pred CeeecC
Q 011707 295 GVVYGV 300 (479)
Q Consensus 295 ~~v~Gp 300 (479)
|.|.|.
T Consensus 671 G~V~TT 676 (1688)
T 2pff_A 671 GWTRGT 676 (1688)
T ss_dssp CCCCCC
T ss_pred CcCcCC
Confidence 998753
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=2e-12 Score=154.84 Aligned_cols=177 Identities=14% Similarity=0.108 Sum_probs=121.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCe-EEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYE-VAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..+|++|||||+|+||..+++.|+++|++ |++++|..... ....+.++.+.. .+.++.++.+|++
T Consensus 1882 ~~~k~~lITGgs~GIG~aia~~la~~Ga~~vvl~~R~~~~~-------------~~~~~~~~~l~~-~g~~v~~~~~Dvs 1947 (2512)
T 2vz8_A 1882 PPHKSYVITGGLGGFGLQLAQWLRLRGAQKLVLTSRSGIRT-------------GYQARQVREWRR-QGVQVLVSTSNAS 1947 (2512)
T ss_dssp CTTCEEEEESTTSHHHHHHHHHHHHTTCCEEEEECSSCCCS-------------HHHHHHHHHHHH-TTCEEEEECCCSS
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHCCCCEEEEEeCCCcch-------------HHHHHHHHHHHh-CCCEEEEEecCCC
Confidence 36899999999999999999999999997 66666643211 001111222221 2457888999999
Q ss_pred ChHHHHHHhhhc----CCCEEEEcccccCcc-cccccccccchhhhhhHHHHHHHHHHHHHcC--CcceEEEeecc-ccc
Q 011707 163 DFEFLSESFKSF----EPDAVVHFGEQRSAP-YSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR--QECHLVKLGTM-GEY 234 (479)
Q Consensus 163 d~~~~~~~~~~~----~~D~Vih~A~~~~~~-~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g--~~~~~V~~SS~-~v~ 234 (479)
|.++++++++.. .+|+||||||..... ....+.+++.+++++|+.|+.++.+++.... -+ +||++||. +..
T Consensus 1948 d~~~v~~~~~~~~~~g~id~lVnnAgv~~~~~~~~~t~e~~~~~~~~nv~g~~~l~~~~~~~~~~~g-~iV~iSS~ag~~ 2026 (2512)
T 2vz8_A 1948 SLDGARSLITEATQLGPVGGVFNLAMVLRDAVLENQTPEFFQDVSKPKYSGTANLDRVTREACPELD-YFVIFSSVSCGR 2026 (2512)
T ss_dssp SHHHHHHHHHHHHHHSCEEEEEECCCC----------------CTTTTHHHHHHHHHHHHHHCTTCC-EEEEECCHHHHT
T ss_pred CHHHHHHHHHHHHhcCCCcEEEECCCcCCCCchhhCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-EEEEecchhhcC
Confidence 999988877643 689999999975432 2334667788999999999999988876542 23 89999994 444
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCC
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVR 301 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~ 301 (479)
|.+ ....|+.+|+..+.+++.... .|++...+..+.+-+.+
T Consensus 2027 g~~-------------------------g~~~Y~aaKaal~~l~~~rr~-~Gl~~~a~~~g~~~~~G 2067 (2512)
T 2vz8_A 2027 GNA-------------------------GQANYGFANSAMERICEKRRH-DGLPGLAVQWGAIGDVG 2067 (2512)
T ss_dssp TCT-------------------------TCHHHHHHHHHHHHHHHHHHH-TTSCCCEEEECCBCTTS
T ss_pred CCC-------------------------CcHHHHHHHHHHHHHHHHHHH-CCCcEEEEEccCcCCcc
Confidence 433 267899999999999986544 49999999887765443
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=5.9e-11 Score=141.89 Aligned_cols=245 Identities=10% Similarity=0.011 Sum_probs=150.0
Q ss_pred CCCCcEEEEEcCCch-hhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGY-CGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~-iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.+++|++|||||+++ ||.++++.|+++|++|++.++....... ..+.+..+.+. ..+.++..+.+|+
T Consensus 2133 ~l~gKvaLVTGAs~GsIG~AiA~~La~~GA~Vvi~~r~~~~~~~-----------~~~~~l~~~l~-~~G~~~~~v~~Dv 2200 (3089)
T 3zen_D 2133 XXXDEVAVVTGASKGSIAASVVGQLLDGGATVIATTSRLDDDRL-----------AFYKQLYRDHA-RFDATLWVVPANM 2200 (3089)
T ss_dssp CCCCCEEEEESCCTTSHHHHHHHHHHHTTCEEEEEESCCSHHHH-----------HHHHHHHHHHC-CTTCEEEEEECCT
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHHCCCEEEEEeCChhhhhh-----------HHHHHHHHHHh-hcCCeEEEEEecC
Confidence 368999999999999 9999999999999999999875432000 00111111121 1234678899999
Q ss_pred CChHHHHHHhhh--------c-CCCEEEEccccc----Cc--ccccccccccchh----hhhhHHHHHHHHHHHHHc---
Q 011707 162 CDFEFLSESFKS--------F-EPDAVVHFGEQR----SA--PYSMIDRSRAVFT----QHNNVIGTLNVLFAMKEF--- 219 (479)
Q Consensus 162 ~d~~~~~~~~~~--------~-~~D~Vih~A~~~----~~--~~~~~~~~~~~~~----~~~Nv~g~~~ll~~a~~~--- 219 (479)
+|.++++++++. + ++|++|||||.. .. .....+.+++... +++|+.+++.+++++...
T Consensus 2201 td~~~v~~lv~~i~~~~~~~fG~IDILVNNAGi~d~~~~~a~~~~~~~~e~~~~~~e~~~~vnl~~~~~l~~~~~~~m~~ 2280 (3089)
T 3zen_D 2201 ASYSDIDKLVEWVGTEQTESLGPQSIHLKDAQTPTLLFPFAAPRVAGDMSEVGSRAEMEMKVLLWAVQRLISGLSKIGAE 2280 (3089)
T ss_dssp TCHHHHHHHHHHHTSCCEEEESSSEEEECCCCCCSEEEECCCCCCCCTTSCTTSHHHHHHHHHTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhhhhhcCCCCEEEECCCcccccCcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998887642 1 589999999972 11 1111133345445 789999999888877542
Q ss_pred -CCc--ceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH--h--CCceEEe
Q 011707 220 -RQE--CHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA--W--GIRATDL 292 (479)
Q Consensus 220 -g~~--~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~--~--gl~~~iv 292 (479)
+.. ..+|..+|. ..+.. .....|+.||++.+.+++.++.+ + +++++.+
T Consensus 2281 ~~~g~~~~ii~~~ss-~~g~~------------------------g~~~aYsASKaAl~~LtrslA~E~~~a~~IrVn~v 2335 (3089)
T 3zen_D 2281 RDIASRLHVVLPGSP-NRGMF------------------------GGDGAYGEAKSALDALENRWSAEKSWAERVSLAHA 2335 (3089)
T ss_dssp TTCCCCEEEEEEECS-STTSC------------------------SSCSSHHHHGGGHHHHHHHHHHCSTTTTTEEEEEE
T ss_pred cCCCceeEEEEECCc-ccccC------------------------CCchHHHHHHHHHHHHHHHHHhccccCCCeEEEEE
Confidence 221 122222221 11110 12357999999999999999998 4 5889999
Q ss_pred ecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC---
Q 011707 293 NQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--- 369 (479)
Q Consensus 293 Rp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--- 369 (479)
.||.|-+...... . ..... .....+ . .....+|+|.+++.++.....
T Consensus 2336 ~PG~v~tT~l~~~------------~----~~~~~----~~~~~~---------~-r~~~PeEIA~avlfLaS~~a~~~~ 2385 (3089)
T 3zen_D 2336 LIGWTKGTGLMGQ------------N----DAIVS----AVEEAG---------V-TTYTTDEMAAMLLDLCTVETKVAA 2385 (3089)
T ss_dssp ECCCEECSTTTTT------------T----TTTHH----HHGGGS---------C-BCEEHHHHHHHHHHTTSHHHHHHH
T ss_pred eecccCCCccccc------------c----hhHHH----HHHhcC---------C-CCCCHHHHHHHHHHHhChhhhhHh
Confidence 9998875432100 0 00011 111101 1 112789999999987753211
Q ss_pred CCCceEEEeCC--C--CcCHHHHHHHHHH
Q 011707 370 PGEFRVFNQFT--E--QFSVNQLAALVTK 394 (479)
Q Consensus 370 ~g~~~~~ni~~--~--~~s~~el~~~i~~ 394 (479)
.++.-..++.| . .+.+.++...+.+
T Consensus 2386 ~~~p~~vdl~GG~~~~~~~~~~~~~~~~~ 2414 (3089)
T 3zen_D 2386 AGAPVKVDLTGGLGDIKIDMAELAAKARE 2414 (3089)
T ss_dssp HHSCEEEECSBSCSSCCCCHHHHTHHHHH
T ss_pred cCCeEEEEcCCCcCcCCCCHHHHHHHHHH
Confidence 12212344444 2 3788888886643
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.1e-10 Score=92.00 Aligned_cols=95 Identities=19% Similarity=0.100 Sum_probs=74.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.+++|+|+|+ |++|..+++.|++.| ++|++++|.... .+.+. ..++..+.+|+++
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~--------------------~~~~~---~~~~~~~~~d~~~ 59 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAA--------------------LAVLN---RMGVATKQVDAKD 59 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHH--------------------HHHHH---TTTCEEEECCTTC
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHH--------------------HHHHH---hCCCcEEEecCCC
Confidence 4689999999 999999999999999 999999985431 11111 2467889999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEE
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVK 227 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~ 227 (479)
.+.+.++++ ++|+|||+++.. ...++++++.+.|+. +|..
T Consensus 60 ~~~~~~~~~--~~d~vi~~~~~~---------------------~~~~~~~~~~~~g~~-~~~~ 99 (118)
T 3ic5_A 60 EAGLAKALG--GFDAVISAAPFF---------------------LTPIIAKAAKAAGAH-YFDL 99 (118)
T ss_dssp HHHHHHHTT--TCSEEEECSCGG---------------------GHHHHHHHHHHTTCE-EECC
T ss_pred HHHHHHHHc--CCCEEEECCCch---------------------hhHHHHHHHHHhCCC-EEEe
Confidence 999999998 899999998520 135788899998865 4443
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=111.97 Aligned_cols=170 Identities=14% Similarity=0.194 Sum_probs=113.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC-------eEEEEecc----cccccccccCCCCCCccchhhhhhhhhcccCCCce
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY-------EVAIVDSL----IRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNI 154 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~-------~V~~~dr~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 154 (479)
.++|+||||+||||.+++..|+..|. +|+++|+. .... ......+.+.. .
T Consensus 5 ~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~----------------~g~~~dl~~~~---~ 65 (329)
T 1b8p_A 5 PMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKAL----------------QGVMMEIDDCA---F 65 (329)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHH----------------HHHHHHHHTTT---C
T ss_pred CCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccc----------------hhhHHHHhhhc---c
Confidence 57899999999999999999999885 79998875 2100 00111121110 1
Q ss_pred eEEEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeec-cc
Q 011707 155 ELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGT-MG 232 (479)
Q Consensus 155 ~~v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS-~~ 232 (479)
.+ ..|+...+++.++++ +.|+|||+||....+.. +. ..++..|+.+++++++.+.+.+ .+.+||++|. ..
T Consensus 66 ~~-~~~i~~~~~~~~al~--~aD~Vi~~ag~~~~~g~--~r---~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv~ 137 (329)
T 1b8p_A 66 PL-LAGMTAHADPMTAFK--DADVALLVGARPRGPGM--ER---KDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPAN 137 (329)
T ss_dssp TT-EEEEEEESSHHHHTT--TCSEEEECCCCCCCTTC--CH---HHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHH
T ss_pred cc-cCcEEEecCcHHHhC--CCCEEEEeCCCCCCCCC--CH---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCchH
Confidence 11 245555566788888 89999999996432211 11 2357899999999999999985 7778999986 11
Q ss_pred c--ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecC
Q 011707 233 E--YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGV 300 (479)
Q Consensus 233 v--~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp 300 (479)
+ |-... ..+. +| +...|+.+++...++...+++..|++...++..+|+|.
T Consensus 138 ~~t~~~~~--~~~~--------------~p--~~~v~g~t~Ld~~r~~~~la~~lgv~~~~v~~~~v~G~ 189 (329)
T 1b8p_A 138 TNAYIAMK--SAPS--------------LP--AKNFTAMLRLDHNRALSQIAAKTGKPVSSIEKLFVWGN 189 (329)
T ss_dssp HHHHHHHH--TCTT--------------SC--GGGEEECCHHHHHHHHHHHHHHHTCCGGGEESCEEEBC
T ss_pred HHHHHHHH--HcCC--------------CC--HHHEEEeecHHHHHHHHHHHHHhCcCHHHceEEEEEec
Confidence 1 00000 0000 11 22458888888888888888888988888887778884
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.1e-10 Score=109.65 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=80.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+|++|++++..|+++|++|++++|..... .+..+.+... .++.++.+|++
T Consensus 116 ~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~~~~----------------~~l~~~~~~~--~~~~~~~~D~~ 177 (287)
T 1lu9_A 116 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKA----------------QAAADSVNKR--FKVNVTAAETA 177 (287)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHH----------------HHHHHHHHHH--HTCCCEEEECC
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCHHHH----------------HHHHHHHHhc--CCcEEEEecCC
Confidence 35789999999999999999999999999999998854311 1111111111 14667889999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCc--ccccccc-cccchhhhhhHHHHH-----HHHHHH
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSA--PYSMIDR-SRAVFTQHNNVIGTL-----NVLFAM 216 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~--~~~~~~~-~~~~~~~~~Nv~g~~-----~ll~~a 216 (479)
+.+++.++++ .+|+|||||+.... +....+. .++..++++|+.++. .+++.+
T Consensus 178 ~~~~~~~~~~--~~DvlVn~ag~g~~~~~~~~~~~~~~~~~~~dvn~~~~~~i~~t~ll~~a 237 (287)
T 1lu9_A 178 DDASRAEAVK--GAHFVFTAGAIGLELLPQAAWQNESSIEIVADYNAQPPLGIGGIDATDKG 237 (287)
T ss_dssp SHHHHHHHTT--TCSEEEECCCTTCCSBCHHHHTTCTTCCEEEECCCSSSCSBTTSCTTCEE
T ss_pred CHHHHHHHHH--hCCEEEECCCccccCCChhHcCchHHHHHHHHhhhhhhHHhhcchHHhhc
Confidence 9999999998 78999999975321 1111222 445567888888876 556555
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-08 Score=99.03 Aligned_cols=116 Identities=12% Similarity=0.016 Sum_probs=80.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCC-ceeEEEccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGK-NIELYIGDI 161 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~Dl 161 (479)
++++|+||||+||+|..++..|+.+| ++|+++|+.... . ...++...... .+ .+ +
T Consensus 7 ~~mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~--~----------------~~~dL~~~~~~~~v---~~-~ 64 (326)
T 1smk_A 7 PGFKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAP--G----------------VTADISHMDTGAVV---RG-F 64 (326)
T ss_dssp -CEEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHH--H----------------HHHHHHTSCSSCEE---EE-E
T ss_pred CCCEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcH--h----------------HHHHhhcccccceE---EE-E
Confidence 35789999999999999999999998 789999864320 0 01111111111 22 22 3
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
.+.+++.++++ +.|+|||+||......... ..++..|+.+++++++.+.+.+.+ .+|+++|
T Consensus 65 ~~t~d~~~al~--gaDvVi~~ag~~~~~g~~r-----~dl~~~N~~~~~~i~~~i~~~~p~-~~viv~S 125 (326)
T 1smk_A 65 LGQQQLEAALT--GMDLIIVPAGVPRKPGMTR-----DDLFKINAGIVKTLCEGIAKCCPR-AIVNLIS 125 (326)
T ss_dssp ESHHHHHHHHT--TCSEEEECCCCCCCSSCCC-----SHHHHHHHHHHHHHHHHHHHHCTT-SEEEECC
T ss_pred eCCCCHHHHcC--CCCEEEEcCCcCCCCCCCH-----HHHHHHHHHHHHHHHHHHHhhCCC-eEEEEEC
Confidence 34566788888 8999999999643221111 235789999999999999999877 6666666
|
| >4ggo_A Trans-2-enoyl-COA reductase; rossmann fold, oxidoreductase; 2.00A {Treponema denticola atcc 35405} PDB: 4ggp_A | Back alignment and structure |
|---|
Probab=98.81 E-value=3.5e-08 Score=95.79 Aligned_cols=96 Identities=14% Similarity=-0.030 Sum_probs=67.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHH-hCCCeEEEEecccccccccccCCCCCCc-cchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLS-NKGYEVAIVDSLIRRLFDHQLGLDSLTP-IASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll-~~G~~V~~~dr~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+|++|||||+++||.+.+..|+ +.|..|+++.+...+... +... -........+..+..+.....+.+|++
T Consensus 49 ~pK~vLVtGaSsGiGlA~AialAf~~GA~vi~v~~~~~~~~~------~~atag~~~~~a~~~~i~~~G~~a~~i~~Dv~ 122 (401)
T 4ggo_A 49 APKNVLVLGCSNGYGLASRITAAFGYGAATIGVSFEKAGSET------KYGTPGWYNNLAFDEAAKREGLYSVTIDGDAF 122 (401)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHHHCCEEEEEECCCCCCSS------SCCCHHHHHHHHHHHHHHHHTCCEEEEESCTT
T ss_pred CCCEEEEECCCCcHHHHHHHHHHhhCCCCEEEEecCCccccc------ccccccchhHHHHHHHHHHcCCCceeEeCCCC
Confidence 47999999999999999999998 679999988775432111 0000 000111122222334568899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQR 186 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~ 186 (479)
+.+.++++++.. ++|+|||++|..
T Consensus 123 d~e~i~~vi~~i~~~~G~IDiLVhS~A~~ 151 (401)
T 4ggo_A 123 SDEIKAQVIEEAKKKGIKFDLIVYSLASP 151 (401)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEEECCCCS
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEEecccc
Confidence 999888887754 699999999964
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=8.8e-09 Score=99.37 Aligned_cols=171 Identities=15% Similarity=0.148 Sum_probs=101.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC--eEEEEec--ccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY--EVAIVDS--LIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
++|+||||+||+|.+++..|+..|. ++.++|+ ....... ....+.......+..+.+...|
T Consensus 1 mKI~V~GaaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~-------------~~~dl~~~~~~~~~~~~i~~~~-- 65 (313)
T 1hye_A 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEG-------------LREDIYDALAGTRSDANIYVES-- 65 (313)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHH-------------HHHHHHHHHTTSCCCCEEEEEE--
T ss_pred CEEEEECCCChhHHHHHHHHHhCCCCCEEEEEcCCCchhhhHH-------------HHHHHHHhHHhcCCCeEEEeCC--
Confidence 4899999999999999999999874 6888886 3210000 0000111111111222222211
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIE 242 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~ 242 (479)
+++.++++ ++|+|||+||....+.. + -..++..|+.+++++++++++.+ + .+|+++|--+.-....-..
T Consensus 66 --d~l~~al~--gaD~Vi~~Ag~~~~~g~--~---r~dl~~~N~~i~~~i~~~i~~~~-~-~~vlv~SNPv~~~t~~~~k 134 (313)
T 1hye_A 66 --DENLRIID--ESDVVIITSGVPRKEGM--S---RMDLAKTNAKIVGKYAKKIAEIC-D-TKIFVITNPVDVMTYKALV 134 (313)
T ss_dssp --TTCGGGGT--TCSEEEECCSCCCCTTC--C---HHHHHHHHHHHHHHHHHHHHHHC-C-CEEEECSSSHHHHHHHHHH
T ss_pred --cchHHHhC--CCCEEEECCCCCCCCCC--c---HHHHHHHHHHHHHHHHHHHHHhC-C-eEEEEecCcHHHHHHHHHH
Confidence 22455677 89999999996432211 1 12357899999999999999998 7 6666666211100000000
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhh-hhHHHHHHHHHHHHHhCCceEEeecCeeec
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHL-SKVHDSHNIAFTCKAWGIRATDLNQGVVYG 299 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~-sK~~~E~~~~~~~~~~gl~~~ivRp~~v~G 299 (479)
.. ...+...++. +.+...++...+++..|++..-++. .|+|
T Consensus 135 ~~---------------~~p~~rviG~gt~LD~~r~~~~la~~lgv~~~~v~~-~v~G 176 (313)
T 1hye_A 135 DS---------------KFERNQVFGLGTHLDSLRFKVAIAKFFGVHIDEVRT-RIIG 176 (313)
T ss_dssp HH---------------CCCTTSEEECTTHHHHHHHHHHHHHHHTCCGGGEEC-CEEE
T ss_pred hh---------------CcChhcEEEeCccHHHHHHHHHHHHHhCcCHHHeEE-EEee
Confidence 00 1123456777 6766778877788888887666665 4555
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=9.3e-08 Score=80.70 Aligned_cols=101 Identities=17% Similarity=0.138 Sum_probs=71.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++++|+|+|+ |.+|..+++.|.+.|++|+++++.... .+.+ ...+...+.+|.++.
T Consensus 5 ~~~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~--------------------~~~~---~~~~~~~~~~d~~~~ 60 (144)
T 2hmt_A 5 KNKQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEK--------------------VNAY---ASYATHAVIANATEE 60 (144)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHH--------------------HHTT---TTTCSEEEECCTTCH
T ss_pred cCCcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHH--------------------HHHH---HHhCCEEEEeCCCCH
Confidence 4678999998 999999999999999999999875321 1111 112456788999998
Q ss_pred HHHHHH-hhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecc
Q 011707 165 EFLSES-FKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTM 231 (479)
Q Consensus 165 ~~~~~~-~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~ 231 (479)
+.+.++ +. ++|+||++++.. .+.|. .+.+.+++.++. ++|..++.
T Consensus 61 ~~l~~~~~~--~~d~vi~~~~~~---------------~~~~~----~~~~~~~~~~~~-~ii~~~~~ 106 (144)
T 2hmt_A 61 NELLSLGIR--NFEYVIVAIGAN---------------IQAST----LTTLLLKELDIP-NIWVKAQN 106 (144)
T ss_dssp HHHHTTTGG--GCSEEEECCCSC---------------HHHHH----HHHHHHHHTTCS-EEEEECCS
T ss_pred HHHHhcCCC--CCCEEEECCCCc---------------hHHHH----HHHHHHHHcCCC-eEEEEeCC
Confidence 877765 55 799999998620 02233 466777888876 77766653
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-08 Score=97.98 Aligned_cols=115 Identities=16% Similarity=0.122 Sum_probs=74.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC--eEEEEec--ccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY--EVAIVDS--LIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
++|+||||+|++|..++..|+..|. ++.++|+ ....... ....+..... ....+.+...
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~-------------~~~dl~~~~~-~~~~~~v~~~--- 63 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVG-------------QAADTNHGIA-YDSNTRVRQG--- 63 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHH-------------HHHHHHHHHT-TTCCCEEEEC---
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHH-------------HHHHHHHHHh-hCCCcEEEeC---
Confidence 5899999999999999999999875 6888887 3211000 0000111111 1123333332
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
+ .++++ +.|+|||+||....+.... ..++..|+.+++++++++++.+.+ .+|+++|
T Consensus 64 ~----~~a~~--~aDvVi~~ag~~~~~g~~r-----~dl~~~N~~i~~~i~~~i~~~~p~-~~viv~S 119 (303)
T 1o6z_A 64 G----YEDTA--GSDVVVITAGIPRQPGQTR-----IDLAGDNAPIMEDIQSSLDEHNDD-YISLTTS 119 (303)
T ss_dssp C----GGGGT--TCSEEEECCCCCCCTTCCH-----HHHHHHHHHHHHHHHHHHHTTCSC-CEEEECC
T ss_pred C----HHHhC--CCCEEEEcCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHHCCC-cEEEEeC
Confidence 2 33466 8999999999643222111 235789999999999999999887 6666666
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.8e-07 Score=76.91 Aligned_cols=75 Identities=20% Similarity=0.221 Sum_probs=57.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++++|+|+|+ |.+|.++++.|.+.|++|+++|+... ..+.+.. .++.++.+|.+++
T Consensus 5 ~~~~v~I~G~-G~iG~~la~~L~~~g~~V~~id~~~~--------------------~~~~~~~---~~~~~~~gd~~~~ 60 (141)
T 3llv_A 5 GRYEYIVIGS-EAAGVGLVRELTAAGKKVLAVDKSKE--------------------KIELLED---EGFDAVIADPTDE 60 (141)
T ss_dssp -CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHH--------------------HHHHHHH---TTCEEEECCTTCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEECCHH--------------------HHHHHHH---CCCcEEECCCCCH
Confidence 3678999998 99999999999999999999998543 1222211 3577899999999
Q ss_pred HHHHHHhhhcCCCEEEEccc
Q 011707 165 EFLSESFKSFEPDAVVHFGE 184 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~ 184 (479)
+.++++--. ++|+||.+.+
T Consensus 61 ~~l~~~~~~-~~d~vi~~~~ 79 (141)
T 3llv_A 61 SFYRSLDLE-GVSAVLITGS 79 (141)
T ss_dssp HHHHHSCCT-TCSEEEECCS
T ss_pred HHHHhCCcc-cCCEEEEecC
Confidence 988876221 7899998764
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=98.55 E-value=4.5e-07 Score=90.66 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=62.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCC---CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKG---YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G---~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+++|+|+|| |+||+.+++.|++.| .+|++++|..... .+..+.+....+.++..+.+|++
T Consensus 1 M~kVlIiGa-GgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~----------------~~la~~l~~~~~~~~~~~~~D~~ 63 (405)
T 4ina_A 1 MAKVLQIGA-GGVGGVVAHKMAMNREVFSHITLASRTLSKC----------------QEIAQSIKAKGYGEIDITTVDAD 63 (405)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHTCTTTCCEEEEEESCHHHH----------------HHHHHHHHHTTCCCCEEEECCTT
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEEECCHHHH----------------HHHHHHhhhhcCCceEEEEecCC
Confidence 468999999 999999999999998 3899988864321 11112222111236888999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQ 185 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~ 185 (479)
|.++++++++..++|+||||++.
T Consensus 64 d~~~l~~~l~~~~~DvVin~ag~ 86 (405)
T 4ina_A 64 SIEELVALINEVKPQIVLNIALP 86 (405)
T ss_dssp CHHHHHHHHHHHCCSEEEECSCG
T ss_pred CHHHHHHHHHhhCCCEEEECCCc
Confidence 99999999996569999999973
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=98.51 E-value=2.2e-07 Score=93.99 Aligned_cols=114 Identities=14% Similarity=0.091 Sum_probs=75.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++++|+|+| +|++|+++++.|++.|++|++++|.... .+.+... ..++..+.+|++|.
T Consensus 2 ~~k~VlViG-aG~iG~~ia~~L~~~G~~V~v~~R~~~~--------------------a~~la~~-~~~~~~~~~Dv~d~ 59 (450)
T 1ff9_A 2 ATKSVLMLG-SGFVTRPTLDVLTDSGIKVTVACRTLES--------------------AKKLSAG-VQHSTPISLDVNDD 59 (450)
T ss_dssp CCCEEEEEC-CSTTHHHHHHHHHTTTCEEEEEESSHHH--------------------HHHTTTT-CTTEEEEECCTTCH
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCcCEEEEEECCHHH--------------------HHHHHHh-cCCceEEEeecCCH
Confidence 468999998 7999999999999999999999885431 1111111 12467888999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCccccccccccc-chhhh--hhHHHHHHHHHHHHHcCCc
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRA-VFTQH--NNVIGTLNVLFAMKEFRQE 222 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~-~~~~~--~Nv~g~~~ll~~a~~~g~~ 222 (479)
+++.++++ ++|+||||++......-....... ..++. ....++.+++++|++.|+.
T Consensus 60 ~~l~~~l~--~~DvVIn~a~~~~~~~i~~a~l~~g~~vvd~~~~~~~~~~l~~aA~~aGv~ 118 (450)
T 1ff9_A 60 AALDAEVA--KHDLVISLIPYTFHATVIKSAIRQKKHVVTTSYVSPAMMELDQAAKDAGIT 118 (450)
T ss_dssp HHHHHHHT--TSSEEEECCC--CHHHHHHHHHHHTCEEEESSCCCHHHHHTHHHHHHTTCE
T ss_pred HHHHHHHc--CCcEEEECCccccchHHHHHHHhCCCeEEEeecccHHHHHHHHHHHHCCCe
Confidence 99999998 899999999853211000000000 00111 1134678999999998843
|
| >1u7z_A Coenzyme A biosynthesis bifunctional protein coabc; ligase; HET: PMT; 2.30A {Escherichia coli} SCOP: c.72.3.1 PDB: 1u7w_A* 1u7u_A* 1u80_A* | Back alignment and structure |
|---|
Probab=98.41 E-value=8e-07 Score=80.49 Aligned_cols=76 Identities=18% Similarity=0.228 Sum_probs=55.6
Q ss_pred CCCcEEEEEcC----------------CchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhc
Q 011707 84 SKAKRVMIIGG----------------DGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147 (479)
Q Consensus 84 ~~~~~vLVtGa----------------tG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (479)
+++|+|||||| +|.+|.++++.|+++|++|+++++...- .
T Consensus 6 l~gk~vlVTgG~T~E~iDpVR~itN~SSg~iG~aiA~~~~~~Ga~V~l~~~~~~l------~------------------ 61 (226)
T 1u7z_A 6 LKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSL------P------------------ 61 (226)
T ss_dssp TTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCC------C------------------
T ss_pred CCCCEEEEECCCCCcccCceeeccCCCccHHHHHHHHHHHHCCCEEEEEECCccc------c------------------
Confidence 57899999999 7999999999999999999998764310 0
Q ss_pred ccCCCceeEEEcccCChHHHHHHh-hhc-CCCEEEEcccccC
Q 011707 148 SLTGKNIELYIGDICDFEFLSESF-KSF-EPDAVVHFGEQRS 187 (479)
Q Consensus 148 ~~~~~~v~~v~~Dl~d~~~~~~~~-~~~-~~D~Vih~A~~~~ 187 (479)
...++. ..|+++.+++.+.+ +.+ ++|++|||||+..
T Consensus 62 --~~~g~~--~~dv~~~~~~~~~v~~~~~~~Dili~~Aav~d 99 (226)
T 1u7z_A 62 --TPPFVK--RVDVMTALEMEAAVNASVQQQNIFIGCAAVAD 99 (226)
T ss_dssp --CCTTEE--EEECCSHHHHHHHHHHHGGGCSEEEECCBCCS
T ss_pred --cCCCCe--EEccCcHHHHHHHHHHhcCCCCEEEECCcccC
Confidence 001222 46888876554443 222 6999999999764
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-06 Score=72.12 Aligned_cols=98 Identities=16% Similarity=0.213 Sum_probs=68.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|+|+|+|+ |++|..+++.|.+.|++|+++++.... .+.+... .++.++.+|.++.+
T Consensus 4 ~m~i~IiG~-G~iG~~~a~~L~~~g~~v~~~d~~~~~--------------------~~~~~~~--~~~~~~~~d~~~~~ 60 (140)
T 1lss_A 4 GMYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKDI--------------------CKKASAE--IDALVINGDCTKIK 60 (140)
T ss_dssp -CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HHHHHHH--CSSEEEESCTTSHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHH--------------------HHHHHHh--cCcEEEEcCCCCHH
Confidence 578999987 999999999999999999999875331 1111110 14567889999888
Q ss_pred HHHHH-hhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 166 FLSES-FKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 166 ~~~~~-~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
.+.+. ++ ++|+||++... ...|. .+.+.++..+.+ ++|..+
T Consensus 61 ~l~~~~~~--~~d~vi~~~~~----------------~~~~~----~~~~~~~~~~~~-~ii~~~ 102 (140)
T 1lss_A 61 TLEDAGIE--DADMYIAVTGK----------------EEVNL----MSSLLAKSYGIN-KTIARI 102 (140)
T ss_dssp HHHHTTTT--TCSEEEECCSC----------------HHHHH----HHHHHHHHTTCC-CEEEEC
T ss_pred HHHHcCcc--cCCEEEEeeCC----------------chHHH----HHHHHHHHcCCC-EEEEEe
Confidence 77655 44 79999999641 01232 456677777776 776544
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.40 E-value=2.5e-06 Score=72.95 Aligned_cols=77 Identities=18% Similarity=0.343 Sum_probs=58.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.++|+|+|+ |.+|.++++.|.+.|++|+++++.... +.+.+......++.++.+|.++++
T Consensus 3 ~~~vlI~G~-G~vG~~la~~L~~~g~~V~vid~~~~~-------------------~~~~~~~~~~~~~~~i~gd~~~~~ 62 (153)
T 1id1_A 3 KDHFIVCGH-SILAINTILQLNQRGQNVTVISNLPED-------------------DIKQLEQRLGDNADVIPGDSNDSS 62 (153)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHH-------------------HHHHHHHHHCTTCEEEESCTTSHH
T ss_pred CCcEEEECC-CHHHHHHHHHHHHCCCCEEEEECCChH-------------------HHHHHHHhhcCCCeEEEcCCCCHH
Confidence 568999997 999999999999999999999975311 111111111246889999999999
Q ss_pred HHHHH-hhhcCCCEEEEccc
Q 011707 166 FLSES-FKSFEPDAVVHFGE 184 (479)
Q Consensus 166 ~~~~~-~~~~~~D~Vih~A~ 184 (479)
.+.++ ++ +.|+||-+.+
T Consensus 63 ~l~~a~i~--~ad~vi~~~~ 80 (153)
T 1id1_A 63 VLKKAGID--RCRAILALSD 80 (153)
T ss_dssp HHHHHTTT--TCSEEEECSS
T ss_pred HHHHcChh--hCCEEEEecC
Confidence 98887 66 7999997764
|
| >2gk4_A Conserved hypothetical protein; alpha-beta-alpha sandwich, flavoprotein, structural genomics protein structure initiative; 1.83A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.1e-06 Score=79.71 Aligned_cols=78 Identities=18% Similarity=0.267 Sum_probs=53.4
Q ss_pred CCcEEEEEcC----------------CchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc
Q 011707 85 KAKRVMIIGG----------------DGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS 148 (479)
Q Consensus 85 ~~~~vLVtGa----------------tG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (479)
+||+|||||| +|.+|.++++.|+++|++|+++++..... +
T Consensus 2 ~gk~vlVTgG~T~E~IDpVR~ItN~SSG~mG~aiA~~~~~~Ga~V~lv~~~~~~~-----------~------------- 57 (232)
T 2gk4_A 2 NAMKILVTSGGTSEAIDSVRSITNHSTGHLGKIITETLLSAGYEVCLITTKRALK-----------P------------- 57 (232)
T ss_dssp -CCEEEEECSBCEEESSSSEEEEECCCCHHHHHHHHHHHHTTCEEEEEECTTSCC-----------C-------------
T ss_pred CCCEEEEeCCCcccccCceeeccCCCCCHHHHHHHHHHHHCCCEEEEEeCCcccc-----------c-------------
Confidence 4899999999 99999999999999999999998753210 0
Q ss_pred cCCCceeEEEcccCChHHHHHHhh-hc-CCCEEEEcccccCc
Q 011707 149 LTGKNIELYIGDICDFEFLSESFK-SF-EPDAVVHFGEQRSA 188 (479)
Q Consensus 149 ~~~~~v~~v~~Dl~d~~~~~~~~~-~~-~~D~Vih~A~~~~~ 188 (479)
....++..+ |+...+++.+.+. .. ++|++||+||....
T Consensus 58 ~~~~~~~~~--~v~s~~em~~~v~~~~~~~Dili~aAAvsD~ 97 (232)
T 2gk4_A 58 EPHPNLSIR--EITNTKDLLIEMQERVQDYQVLIHSMAVSDY 97 (232)
T ss_dssp CCCTTEEEE--ECCSHHHHHHHHHHHGGGCSEEEECSBCCSE
T ss_pred cCCCCeEEE--EHhHHHHHHHHHHHhcCCCCEEEEcCccccc
Confidence 001234443 4545544433322 22 69999999997654
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=8e-06 Score=69.92 Aligned_cols=76 Identities=29% Similarity=0.332 Sum_probs=57.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
..+++|+|+|+ |.+|..+++.|.+.|++|+++++.... .+.+.. ..++..+.+|.++
T Consensus 17 ~~~~~v~IiG~-G~iG~~la~~L~~~g~~V~vid~~~~~--------------------~~~~~~--~~g~~~~~~d~~~ 73 (155)
T 2g1u_A 17 QKSKYIVIFGC-GRLGSLIANLASSSGHSVVVVDKNEYA--------------------FHRLNS--EFSGFTVVGDAAE 73 (155)
T ss_dssp CCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGG--------------------GGGSCT--TCCSEEEESCTTS
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHHH--------------------HHHHHh--cCCCcEEEecCCC
Confidence 35789999997 999999999999999999999875431 111110 1356677899888
Q ss_pred hHHHHHH-hhhcCCCEEEEccc
Q 011707 164 FEFLSES-FKSFEPDAVVHFGE 184 (479)
Q Consensus 164 ~~~~~~~-~~~~~~D~Vih~A~ 184 (479)
.+.+.++ +. ++|+||.+.+
T Consensus 74 ~~~l~~~~~~--~ad~Vi~~~~ 93 (155)
T 2g1u_A 74 FETLKECGME--KADMVFAFTN 93 (155)
T ss_dssp HHHHHTTTGG--GCSEEEECSS
T ss_pred HHHHHHcCcc--cCCEEEEEeC
Confidence 8777665 55 7899998865
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.31 E-value=8.6e-07 Score=89.89 Aligned_cols=114 Identities=11% Similarity=0.065 Sum_probs=74.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.+++++|+|+|+ |++|+.++..|++. |++|++++|.... ++.+... .++..+.+|+
T Consensus 20 ~l~~k~VlIiGA-GgiG~aia~~L~~~~g~~V~v~~R~~~k--------------------a~~la~~--~~~~~~~~D~ 76 (467)
T 2axq_A 20 RHMGKNVLLLGS-GFVAQPVIDTLAANDDINVTVACRTLAN--------------------AQALAKP--SGSKAISLDV 76 (467)
T ss_dssp ---CEEEEEECC-STTHHHHHHHHHTSTTEEEEEEESSHHH--------------------HHHHHGG--GTCEEEECCT
T ss_pred CCCCCEEEEECC-hHHHHHHHHHHHhCCCCeEEEEECCHHH--------------------HHHHHHh--cCCcEEEEec
Confidence 456889999998 99999999999998 7899999885431 1111111 2466778999
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCccc-ccccccccchhhhhhH--HHHHHHHHHHHHcCC
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNV--IGTLNVLFAMKEFRQ 221 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv--~g~~~ll~~a~~~g~ 221 (479)
.|.+++.++++ ++|+|||+++...... .......-..+++++. ..+..++++|++.|+
T Consensus 77 ~d~~~l~~~l~--~~DvVIn~tp~~~~~~v~~a~l~~g~~vvd~~~~~p~~~~Ll~~Ak~aGv 137 (467)
T 2axq_A 77 TDDSALDKVLA--DNDVVISLIPYTFHPNVVKSAIRTKTDVVTSSYISPALRELEPEIVKAGI 137 (467)
T ss_dssp TCHHHHHHHHH--TSSEEEECSCGGGHHHHHHHHHHHTCEEEECSCCCHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHc--CCCEEEECCchhhhHHHHHHHHhcCCEEEEeecCCHHHHHHHHHHHHcCC
Confidence 99999999988 8999999998532110 0000000011223332 345778888888874
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=4.7e-06 Score=80.13 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=78.0
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCC-ceeEEEcccCC
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGK-NIELYIGDICD 163 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~Dl~d 163 (479)
|+|.|+||+|++|..++..|+..| .+|+++|+.... ....++.+.... ++....+
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~------------------~~a~dL~~~~~~~~l~~~~~---- 58 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP------------------GVAADLSHIETRATVKGYLG---- 58 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHH------------------HHHHHHTTSSSSCEEEEEES----
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccH------------------HHHHHHhccCcCceEEEecC----
Confidence 489999999999999999999888 789999985410 011122111111 1222111
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
.++++++++ +.|+||++||....+.... ...+..|+..++.+++.+.+.+...+||++|-
T Consensus 59 t~d~~~a~~--~aDvVvi~ag~~~~~g~~r-----~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sN 118 (314)
T 1mld_A 59 PEQLPDCLK--GCDVVVIPAGVPRKPGMTR-----DDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (314)
T ss_dssp GGGHHHHHT--TCSEEEECCSCCCCTTCCG-----GGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred CCCHHHHhC--CCCEEEECCCcCCCCCCcH-----HHHHHHHHHHHHHHHHHHHhhCCCeEEEEECC
Confidence 234777788 8999999999643222111 23468899999999999999887768888654
|
| >5mdh_A Malate dehydrogenase; oxidoreductase, (NAD(A)-CHOH(D)); HET: NAD; 2.40A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 4mdh_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-06 Score=84.95 Aligned_cols=120 Identities=13% Similarity=0.112 Sum_probs=76.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC--e-----EEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEE
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY--E-----VAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYI 158 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~--~-----V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 158 (479)
.++|+||||+|+||.+++..|+..|. + ++++|+..... .......++.+....-+.
T Consensus 3 ~~kV~V~GaaG~VG~~la~~L~~~~~~~e~~~~~l~L~Di~~~~~--------------~~~g~a~DL~~~~~~~~~--- 65 (333)
T 5mdh_A 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMG--------------VLDGVLMELQDCALPLLK--- 65 (333)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHH--------------HHHHHHHHHHHTCCTTEE---
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCCCccccCCCEEEEEeCCCccc--------------cchhhHhhhHhhhhcccC---
Confidence 36899999999999999999998874 5 88888753100 000111122221111111
Q ss_pred cccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcc-eEEEeec
Q 011707 159 GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQEC-HLVKLGT 230 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~-~~V~~SS 230 (479)
++...+...+.++ +.|+|||+||....+...+ ...++.|+..++++++++++.+.+. +++.+|-
T Consensus 66 -~~~~~~~~~~~~~--daDvVvitAg~prkpG~tR-----~dll~~N~~i~~~i~~~i~~~~~~~~~vivvsN 130 (333)
T 5mdh_A 66 -DVIATDKEEIAFK--DLDVAILVGSMPRRDGMER-----KDLLKANVKIFKCQGAALDKYAKKSVKVIVVGN 130 (333)
T ss_dssp -EEEEESCHHHHTT--TCSEEEECCSCCCCTTCCT-----TTTHHHHHHHHHHHHHHHHHHSCTTCEEEECSS
T ss_pred -CEEEcCCcHHHhC--CCCEEEEeCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCC
Confidence 2222233566677 8999999998643222111 3357889999999999999998764 4666664
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.1e-06 Score=81.89 Aligned_cols=96 Identities=22% Similarity=0.239 Sum_probs=70.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..+.|+|+|.|| |++|+.+++.|.+ .++|.+.|+..+. ++.. ...+..+..|+.
T Consensus 13 ~g~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~--------------------~~~~----~~~~~~~~~d~~ 66 (365)
T 3abi_A 13 EGRHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNEN--------------------LEKV----KEFATPLKVDAS 66 (365)
T ss_dssp ---CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHH--------------------HHHH----TTTSEEEECCTT
T ss_pred cCCccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHH--------------------HHHH----hccCCcEEEecC
Confidence 345678999998 9999999998865 5899998875432 1111 135677889999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
|.+++.++++ +.|+||++++.. . ...++++|.+.| +++|=+|
T Consensus 67 d~~~l~~~~~--~~DvVi~~~p~~-----~----------------~~~v~~~~~~~g--~~yvD~s 108 (365)
T 3abi_A 67 NFDKLVEVMK--EFELVIGALPGF-----L----------------GFKSIKAAIKSK--VDMVDVS 108 (365)
T ss_dssp CHHHHHHHHT--TCSEEEECCCGG-----G----------------HHHHHHHHHHHT--CEEEECC
T ss_pred CHHHHHHHHh--CCCEEEEecCCc-----c----------------cchHHHHHHhcC--cceEeee
Confidence 9999999998 789999998631 0 126888999988 4666655
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.10 E-value=1e-05 Score=71.29 Aligned_cols=74 Identities=16% Similarity=0.126 Sum_probs=57.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.+++|+|+|+ |.+|..+++.|.+. |++|+++|+.... .+.+. ..++..+.+|.++
T Consensus 38 ~~~~v~IiG~-G~~G~~~a~~L~~~~g~~V~vid~~~~~--------------------~~~~~---~~g~~~~~gd~~~ 93 (183)
T 3c85_A 38 GHAQVLILGM-GRIGTGAYDELRARYGKISLGIEIREEA--------------------AQQHR---SEGRNVISGDATD 93 (183)
T ss_dssp TTCSEEEECC-SHHHHHHHHHHHHHHCSCEEEEESCHHH--------------------HHHHH---HTTCCEEECCTTC
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhccCCeEEEEECCHHH--------------------HHHHH---HCCCCEEEcCCCC
Confidence 4678999985 99999999999999 9999999985431 11221 1357788899999
Q ss_pred hHHHHHH--hhhcCCCEEEEccc
Q 011707 164 FEFLSES--FKSFEPDAVVHFGE 184 (479)
Q Consensus 164 ~~~~~~~--~~~~~~D~Vih~A~ 184 (479)
.+.+.++ ++ ++|+||.+.+
T Consensus 94 ~~~l~~~~~~~--~ad~vi~~~~ 114 (183)
T 3c85_A 94 PDFWERILDTG--HVKLVLLAMP 114 (183)
T ss_dssp HHHHHTBCSCC--CCCEEEECCS
T ss_pred HHHHHhccCCC--CCCEEEEeCC
Confidence 8877776 55 7899998764
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.99 E-value=3.4e-05 Score=64.72 Aligned_cols=73 Identities=10% Similarity=0.202 Sum_probs=57.1
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.++|+|+|+ |.+|..+++.|.+.|++|+++|+... +.+.+.. .++.++.+|.++++
T Consensus 7 ~~~viIiG~-G~~G~~la~~L~~~g~~v~vid~~~~--------------------~~~~~~~---~g~~~i~gd~~~~~ 62 (140)
T 3fwz_A 7 CNHALLVGY-GRVGSLLGEKLLASDIPLVVIETSRT--------------------RVDELRE---RGVRAVLGNAANEE 62 (140)
T ss_dssp CSCEEEECC-SHHHHHHHHHHHHTTCCEEEEESCHH--------------------HHHHHHH---TTCEEEESCTTSHH
T ss_pred CCCEEEECc-CHHHHHHHHHHHHCCCCEEEEECCHH--------------------HHHHHHH---cCCCEEECCCCCHH
Confidence 457999997 99999999999999999999998643 2222221 46788999999999
Q ss_pred HHHHH-hhhcCCCEEEEccc
Q 011707 166 FLSES-FKSFEPDAVVHFGE 184 (479)
Q Consensus 166 ~~~~~-~~~~~~D~Vih~A~ 184 (479)
.++++ ++ +.|+||-+.+
T Consensus 63 ~l~~a~i~--~ad~vi~~~~ 80 (140)
T 3fwz_A 63 IMQLAHLE--CAKWLILTIP 80 (140)
T ss_dssp HHHHTTGG--GCSEEEECCS
T ss_pred HHHhcCcc--cCCEEEEECC
Confidence 88775 34 6899997754
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.97 E-value=2.2e-05 Score=76.03 Aligned_cols=118 Identities=13% Similarity=0.112 Sum_probs=75.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhccc--CCCceeEEE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL--TGKNIELYI 158 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~ 158 (479)
.+.+++|.|+|++|++|..++..|+..| .+|+++|........ ...++.+. ...++.+
T Consensus 5 ~~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g----------------~a~DL~~~~~~~~~i~~-- 66 (343)
T 3fi9_A 5 YLTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEG----------------VAEEIRHCGFEGLNLTF-- 66 (343)
T ss_dssp CSCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHH----------------HHHHHHHHCCTTCCCEE--
T ss_pred ccCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHH----------------HHHhhhhCcCCCCceEE--
Confidence 4567899999999999999999999998 489999975431111 11111111 1112221
Q ss_pred cccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcce-EEEeec
Q 011707 159 GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECH-LVKLGT 230 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~-~V~~SS 230 (479)
..+..++++ +.|+||.+||....+...+ ...+..|+...+.+.+.+.+.+.+.. ++.+|-
T Consensus 67 -----t~d~~~al~--dADvVvitaG~p~kpG~~R-----~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvsN 127 (343)
T 3fi9_A 67 -----TSDIKEALT--DAKYIVSSGGAPRKEGMTR-----EDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIFN 127 (343)
T ss_dssp -----ESCHHHHHT--TEEEEEECCC-------CH-----HHHHHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred -----cCCHHHHhC--CCCEEEEccCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHhccCcEEEEEecC
Confidence 123566777 8999999999643222111 23578899999999999999887754 555553
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.83 E-value=9.2e-05 Score=67.09 Aligned_cols=73 Identities=22% Similarity=0.287 Sum_probs=56.8
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|+|+|+ |.+|.++++.|.+.|++|+++|+... ..+.+... .++.++.+|.++++.
T Consensus 1 M~iiIiG~-G~~G~~la~~L~~~g~~v~vid~~~~--------------------~~~~l~~~--~~~~~i~gd~~~~~~ 57 (218)
T 3l4b_C 1 MKVIIIGG-ETTAYYLARSMLSRKYGVVIINKDRE--------------------LCEEFAKK--LKATIIHGDGSHKEI 57 (218)
T ss_dssp CCEEEECC-HHHHHHHHHHHHHTTCCEEEEESCHH--------------------HHHHHHHH--SSSEEEESCTTSHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCeEEEEECCHH--------------------HHHHHHHH--cCCeEEEcCCCCHHH
Confidence 57999997 99999999999999999999997543 12222111 257789999999998
Q ss_pred HHHH-hhhcCCCEEEEccc
Q 011707 167 LSES-FKSFEPDAVVHFGE 184 (479)
Q Consensus 167 ~~~~-~~~~~~D~Vih~A~ 184 (479)
++++ ++ +.|+||-+.+
T Consensus 58 l~~a~i~--~ad~vi~~~~ 74 (218)
T 3l4b_C 58 LRDAEVS--KNDVVVILTP 74 (218)
T ss_dssp HHHHTCC--TTCEEEECCS
T ss_pred HHhcCcc--cCCEEEEecC
Confidence 8877 45 7899996653
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=2e-05 Score=70.29 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+++|||+||+|.||..+++.+...|++|+++++.... .+..... +... ..|+.+.
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~--------------------~~~~~~~---g~~~-~~d~~~~ 93 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAK--------------------REMLSRL---GVEY-VGDSRSV 93 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHH--------------------HHHHHTT---CCSE-EEETTCS
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHH--------------------HHHHHHc---CCCE-EeeCCcH
Confidence 47899999999999999999999999999999875321 1111111 1222 2466665
Q ss_pred HHHHHHhh---hcCCCEEEEccc
Q 011707 165 EFLSESFK---SFEPDAVVHFGE 184 (479)
Q Consensus 165 ~~~~~~~~---~~~~D~Vih~A~ 184 (479)
+..+.+.+ ..++|+||+|+|
T Consensus 94 ~~~~~~~~~~~~~~~D~vi~~~g 116 (198)
T 1pqw_A 94 DFADEILELTDGYGVDVVLNSLA 116 (198)
T ss_dssp THHHHHHHHTTTCCEEEEEECCC
T ss_pred HHHHHHHHHhCCCCCeEEEECCc
Confidence 44444332 226999999987
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=97.76 E-value=6.8e-05 Score=68.76 Aligned_cols=71 Identities=15% Similarity=0.138 Sum_probs=55.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.++|+|+|+ |.+|..+++.|.+.|+ |+++++... ..+.+. .++.++.+|.++++
T Consensus 9 ~~~viI~G~-G~~G~~la~~L~~~g~-v~vid~~~~--------------------~~~~~~----~~~~~i~gd~~~~~ 62 (234)
T 2aef_A 9 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENV--------------------RKKVLR----SGANFVHGDPTRVS 62 (234)
T ss_dssp -CEEEEESC-CHHHHHHHHHSTTSEE-EEEESCGGG--------------------HHHHHH----TTCEEEESCTTCHH
T ss_pred CCEEEEECC-ChHHHHHHHHHHhCCe-EEEEECCHH--------------------HHHHHh----cCCeEEEcCCCCHH
Confidence 468999998 9999999999999999 999887533 111221 35889999999999
Q ss_pred HHHHH-hhhcCCCEEEEccc
Q 011707 166 FLSES-FKSFEPDAVVHFGE 184 (479)
Q Consensus 166 ~~~~~-~~~~~~D~Vih~A~ 184 (479)
.++++ ++ +.|.||.+.+
T Consensus 63 ~l~~a~i~--~ad~vi~~~~ 80 (234)
T 2aef_A 63 DLEKANVR--GARAVIVDLE 80 (234)
T ss_dssp HHHHTTCT--TCSEEEECCS
T ss_pred HHHhcCcc--hhcEEEEcCC
Confidence 88877 66 7899997653
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.67 E-value=3.1e-05 Score=75.68 Aligned_cols=37 Identities=24% Similarity=0.185 Sum_probs=33.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+++|||+||+|.||..+++.+...|++|+++++..
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~ 204 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGE 204 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECST
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCH
Confidence 3578999999999999999999999999999998753
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00034 Score=67.24 Aligned_cols=118 Identities=17% Similarity=0.207 Sum_probs=75.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..++|.|+|+ |++|..++..|+..|. +|+++|+........ ...+.........++.....|.
T Consensus 4 ~~~kI~ViGa-G~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~-------------a~DL~~~~~~~~~~v~i~~~~~- 68 (326)
T 3pqe_A 4 HVNKVALIGA-GFVGSSYAFALINQGITDELVVIDVNKEKAMGD-------------VMDLNHGKAFAPQPVKTSYGTY- 68 (326)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHH-------------HHHHHHTGGGSSSCCEEEEECG-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEecchHHHHHH-------------HHHHHhccccccCCeEEEeCcH-
Confidence 4678999996 9999999999999986 899999754311110 0001111111112344443331
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
++++ +.|+||.+||....+...+ ...+..|+...+.+.+.+.+.+.+..++.+|-
T Consensus 69 ------~a~~--~aDvVvi~ag~p~kpG~~R-----~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN 123 (326)
T 3pqe_A 69 ------EDCK--DADIVCICAGANQKPGETR-----LELVEKNLKIFKGIVSEVMASGFDGIFLVATN 123 (326)
T ss_dssp ------GGGT--TCSEEEECCSCCCCTTCCH-----HHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred ------HHhC--CCCEEEEecccCCCCCccH-----HHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence 3455 8999999998643222111 23568899999999999999887766666653
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00012 Score=72.12 Aligned_cols=76 Identities=22% Similarity=0.239 Sum_probs=57.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++++|+|+|+ |.||..+++.|...|++|+++|+.... .+......+.. +.+|+.+
T Consensus 164 l~~~~V~ViGa-G~iG~~~a~~l~~~Ga~V~~~d~~~~~--------------------~~~~~~~~g~~---~~~~~~~ 219 (369)
T 2eez_A 164 VAPASVVILGG-GTVGTNAAKIALGMGAQVTILDVNHKR--------------------LQYLDDVFGGR---VITLTAT 219 (369)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HHHHHHHTTTS---EEEEECC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECCHHH--------------------HHHHHHhcCce---EEEecCC
Confidence 56789999999 999999999999999999999985431 11111111112 4567778
Q ss_pred hHHHHHHhhhcCCCEEEEcccc
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQ 185 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~ 185 (479)
.+.+.+++. ++|+||++++.
T Consensus 220 ~~~l~~~~~--~~DvVi~~~g~ 239 (369)
T 2eez_A 220 EANIKKSVQ--HADLLIGAVLV 239 (369)
T ss_dssp HHHHHHHHH--HCSEEEECCC-
T ss_pred HHHHHHHHh--CCCEEEECCCC
Confidence 888988888 79999999985
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00032 Score=67.37 Aligned_cols=117 Identities=16% Similarity=0.161 Sum_probs=67.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|.|+|+ |.+|..++..|+..|. +|+++|+........ ...+....... ..+.....|
T Consensus 8 ~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~-------------a~DL~~~~~~~-~~~~i~~~~-- 70 (326)
T 3vku_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGD-------------AIDLEDALPFT-SPKKIYSAE-- 70 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHH-------------HHHHHTTGGGS-CCCEEEECC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHH-------------HhhHhhhhhhc-CCcEEEECc--
Confidence 4679999997 9999999999999886 899999754311110 00011111111 234433333
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
.+.++ +.|+||++||....+...+ ...++.|+.-.+.+.+.+.+.+.+..++.+|-
T Consensus 71 -----~~a~~--~aDiVvi~ag~~~kpG~tR-----~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtN 126 (326)
T 3vku_A 71 -----YSDAK--DADLVVITAGAPQKPGETR-----LDLVNKNLKILKSIVDPIVDSGFNGIFLVAAN 126 (326)
T ss_dssp -----GGGGT--TCSEEEECCCCC---------------------CHHHHHHHHHTTTCCSEEEECSS
T ss_pred -----HHHhc--CCCEEEECCCCCCCCCchH-----HHHHHHHHHHHHHHHHHHHhcCCceEEEEccC
Confidence 23455 8999999999643222111 23567899999999999999887766666653
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00021 Score=71.20 Aligned_cols=73 Identities=18% Similarity=0.323 Sum_probs=57.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+++|+|+|+ |-+|..+++.|.+.|++|+++|+... +++.+. ..++.++.||.++++
T Consensus 4 ~~~viIiG~-Gr~G~~va~~L~~~g~~vvvId~d~~--------------------~v~~~~---~~g~~vi~GDat~~~ 59 (413)
T 3l9w_A 4 GMRVIIAGF-GRFGQITGRLLLSSGVKMVVLDHDPD--------------------HIETLR---KFGMKVFYGDATRMD 59 (413)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEECCHH--------------------HHHHHH---HTTCCCEESCTTCHH
T ss_pred CCeEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHH--------------------HHHHHH---hCCCeEEEcCCCCHH
Confidence 467999997 99999999999999999999998643 222221 136788999999999
Q ss_pred HHHHH-hhhcCCCEEEEccc
Q 011707 166 FLSES-FKSFEPDAVVHFGE 184 (479)
Q Consensus 166 ~~~~~-~~~~~~D~Vih~A~ 184 (479)
.++++ ++ +.|+||-+..
T Consensus 60 ~L~~agi~--~A~~viv~~~ 77 (413)
T 3l9w_A 60 LLESAGAA--KAEVLINAID 77 (413)
T ss_dssp HHHHTTTT--TCSEEEECCS
T ss_pred HHHhcCCC--ccCEEEECCC
Confidence 88887 55 7899987653
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00045 Score=63.89 Aligned_cols=124 Identities=19% Similarity=0.134 Sum_probs=72.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCcc-----chhhhhhhhhcccC-CCceeE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPI-----ASIHDRLRCWKSLT-GKNIEL 156 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~-~~~v~~ 156 (479)
+++++|+|+|+ |.+|.++++.|++.|. +|+++|+..-...+.. .+.+... .......+.+.... .-.+..
T Consensus 29 l~~~~VlVvG~-Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~--Rq~l~~~~diG~~Ka~~~~~~l~~~np~~~v~~ 105 (249)
T 1jw9_B 29 LKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQ--RQTLHSDATVGQPKVESARDALTRINPHIAITP 105 (249)
T ss_dssp HHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGG--TCTTCCGGGTTSBHHHHHHHHHHHHCTTSEEEE
T ss_pred HhCCeEEEEee-CHHHHHHHHHHHHcCCCeEEEEcCCCcccccCC--cccccChhhcCcHHHHHHHHHHHHHCCCcEEEE
Confidence 34679999997 9999999999999996 8888887541111110 0000000 11111122222221 124556
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccccc
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g 235 (479)
+..+++ .+.+.++++ ++|+||.+.. |...-..+.++|++.+ +.+|+.+..+.+|
T Consensus 106 ~~~~~~-~~~~~~~~~--~~DvVi~~~d--------------------~~~~~~~l~~~~~~~~--~p~i~~~~~g~~g 159 (249)
T 1jw9_B 106 VNALLD-DAELAALIA--EHDLVLDCTD--------------------NVAVRNQLNAGCFAAK--VPLVSGAAIRMEG 159 (249)
T ss_dssp ECSCCC-HHHHHHHHH--TSSEEEECCS--------------------SHHHHHHHHHHHHHHT--CCEEEEEEEBTEE
T ss_pred EeccCC-HhHHHHHHh--CCCEEEEeCC--------------------CHHHHHHHHHHHHHcC--CCEEEeeeccceE
Confidence 666665 355677777 7999998753 2233345667788877 3577766554433
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00017 Score=69.86 Aligned_cols=37 Identities=16% Similarity=0.118 Sum_probs=33.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+++|||+||+|.||..+++.+...|++|+++++..
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~ 180 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSD 180 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3588999999999999999999999999999998753
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00011 Score=71.25 Aligned_cols=37 Identities=19% Similarity=0.056 Sum_probs=33.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+++|||+||+|.||..+++.+...|++|+++++..
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~ 180 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTE 180 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3578999999999999999999999999999998754
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=97.43 E-value=0.0002 Score=70.16 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=32.7
Q ss_pred CC--cEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 85 KA--KRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 85 ~~--~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.+ ++|||+||+|.||..+++.+...|+ +|+++++..
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~ 196 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTH 196 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence 46 8999999999999999999999999 999988753
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00071 Score=64.57 Aligned_cols=84 Identities=19% Similarity=0.151 Sum_probs=56.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.+++|++||+|+ |++|+.++..|++.|. +|++++|..+... ...+..+.+.... .+.+...++
T Consensus 151 ~l~gk~~lVlGa-GG~g~aia~~L~~~Ga~~V~i~nR~~~~~~-------------~a~~la~~~~~~~--~~~~~~~~~ 214 (315)
T 3tnl_A 151 DIIGKKMTICGA-GGAATAICIQAALDGVKEISIFNRKDDFYA-------------NAEKTVEKINSKT--DCKAQLFDI 214 (315)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHH-------------HHHHHHHHHHHHS--SCEEEEEET
T ss_pred CccCCEEEEECC-ChHHHHHHHHHHHCCCCEEEEEECCCchHH-------------HHHHHHHHhhhhc--CCceEEecc
Confidence 457899999997 8999999999999998 8999988621000 0111111221111 233344566
Q ss_pred CChHHHHHHhhhcCCCEEEEccc
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGE 184 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~ 184 (479)
.+.+.+.+.+. .+|+|||+..
T Consensus 215 ~~~~~l~~~l~--~aDiIINaTp 235 (315)
T 3tnl_A 215 EDHEQLRKEIA--ESVIFTNATG 235 (315)
T ss_dssp TCHHHHHHHHH--TCSEEEECSS
T ss_pred chHHHHHhhhc--CCCEEEECcc
Confidence 67777888887 7999999864
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0015 Score=62.82 Aligned_cols=117 Identities=16% Similarity=0.195 Sum_probs=75.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccC--CCceeEEEc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT--GKNIELYIG 159 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~~ 159 (479)
...++|.|+|+ |.+|..++..|+..|. +|+++|........ ...++.+.. ......+..
T Consensus 17 ~~~~kV~ViGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g----------------~a~DL~~~~~~~~~~~i~~~ 79 (331)
T 4aj2_A 17 VPQNKITVVGV-GAVGMACAISILMKDLADELALVDVIEDKLKG----------------EMMDLQHGSLFLKTPKIVSS 79 (331)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHH----------------HHHHHHHTGGGCSCCEEEEC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCCceEEEEeCChHHHHH----------------HHHhhhhhhhccCCCeEEEc
Confidence 34689999998 9999999999999987 89999875421111 111121110 111122222
Q ss_pred ccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 160 DICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
.|.+ .++ +.|+||.+||...-+...+ ...++.|..-.+.+.+.+.+.+.+..++.+|-
T Consensus 80 --~d~~----~~~--~aDiVvi~aG~~~kpG~tR-----~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN 137 (331)
T 4aj2_A 80 --KDYS----VTA--NSKLVIITAGARQQEGESR-----LNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN 137 (331)
T ss_dssp --SSGG----GGT--TEEEEEECCSCCCCTTCCG-----GGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred --CCHH----HhC--CCCEEEEccCCCCCCCccH-----HHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 1222 355 8999999999654222222 23678899999999999999887767776664
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0018 Score=62.03 Aligned_cols=119 Identities=14% Similarity=0.106 Sum_probs=74.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEE-Eccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELY-IGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v-~~Dl 161 (479)
+++++|.|+|+ |.+|..++..|+..|+ +|+++|+........ ...+............+. ..|
T Consensus 5 m~~~kI~viGa-G~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~-------------~~dl~~~~~~~~~~~~v~~t~d- 69 (324)
T 3gvi_A 5 MARNKIALIGS-GMIGGTLAHLAGLKELGDVVLFDIAEGTPQGK-------------GLDIAESSPVDGFDAKFTGAND- 69 (324)
T ss_dssp -CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHH-------------HHHHHHHHHHHTCCCCEEEESS-
T ss_pred CcCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCchhHHHH-------------HHHHhchhhhcCCCCEEEEeCC-
Confidence 35679999998 9999999999999998 999999864321110 000111100111122222 123
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
. ++++ +.|+||.+||...-+...+ ...+..|+.-.+.+.+.+.+.+.+..++.+|-
T Consensus 70 --~----~a~~--~aDiVIiaag~p~k~G~~R-----~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN 125 (324)
T 3gvi_A 70 --Y----AAIE--GADVVIVTAGVPRKPGMSR-----DDLLGINLKVMEQVGAGIKKYAPEAFVICITN 125 (324)
T ss_dssp --G----GGGT--TCSEEEECCSCCCC----------CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred --H----HHHC--CCCEEEEccCcCCCCCCCH-----HHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence 2 3566 8999999998643222111 23567899999999999998887767776664
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0019 Score=61.74 Aligned_cols=121 Identities=19% Similarity=0.193 Sum_probs=76.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc--ccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI--RRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIG 159 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 159 (479)
.++.++|.|+|+ |.+|..++..|+..|+ +|+++|+.. ....... .++.+. .............
T Consensus 5 ~~~~~kv~ViGa-G~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a---------~dl~~~----~~~~~~~~~i~~t 70 (315)
T 3tl2_A 5 TIKRKKVSVIGA-GFTGATTAFLLAQKELADVVLVDIPQLENPTKGKA---------LDMLEA----SPVQGFDANIIGT 70 (315)
T ss_dssp CCCCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHH---------HHHHHH----HHHHTCCCCEEEE
T ss_pred ccCCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhh---------hhHHHh----hhhccCCCEEEEc
Confidence 345679999997 9999999999999999 999999862 1111100 001111 0111111222211
Q ss_pred ccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 160 DICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
+ |. +.++ +.|+||-+||....+...+ ...+..|+.-.+.+.+.+.+.+.+..++.+|-
T Consensus 71 ~--d~----~a~~--~aDvVIiaag~p~kpg~~R-----~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN 128 (315)
T 3tl2_A 71 S--DY----ADTA--DSDVVVITAGIARKPGMSR-----DDLVATNSKIMKSITRDIAKHSPNAIIVVLTN 128 (315)
T ss_dssp S--CG----GGGT--TCSEEEECCSCCCCTTCCH-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred C--CH----HHhC--CCCEEEEeCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC
Confidence 1 22 3455 8999999998643222211 23568899999999999998887767776663
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0019 Score=61.88 Aligned_cols=115 Identities=14% Similarity=0.063 Sum_probs=74.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhccc---CCCceeEEEcc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL---TGKNIELYIGD 160 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~~D 160 (479)
++++|.|+|+ |.+|..++..|+..|. +|+++|+....... ...++.+. ......+...
T Consensus 4 ~~~kI~iiGa-G~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g----------------~a~dL~~~~~~~~~~~~v~~t- 65 (321)
T 3p7m_A 4 ARKKITLVGA-GNIGGTLAHLALIKQLGDVVLFDIAQGMPNG----------------KALDLLQTCPIEGVDFKVRGT- 65 (321)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHH----------------HHHHHHTTHHHHTCCCCEEEE-
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCChHHHHH----------------HHHHHHhhhhhcCCCcEEEEc-
Confidence 4678999996 9999999999999987 99999886432111 01111111 1112222211
Q ss_pred cCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
.|. ++++ +.|+||.+||...-+...+ ...+..|+.-.+.+.+.+.+.+.+..++.+|
T Consensus 66 -~d~----~a~~--~aDvVIi~ag~p~k~G~~R-----~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt 122 (321)
T 3p7m_A 66 -NDY----KDLE--NSDVVIVTAGVPRKPGMSR-----DDLLGINIKVMQTVGEGIKHNCPNAFVICIT 122 (321)
T ss_dssp -SCG----GGGT--TCSEEEECCSCCCCTTCCH-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred -CCH----HHHC--CCCEEEEcCCcCCCCCCCH-----HHHHHHhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 122 3566 8999999998643222111 2356789999999999999988776777665
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00034 Score=67.50 Aligned_cols=76 Identities=7% Similarity=-0.024 Sum_probs=51.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+++|||+||+|.||..+++.+...|++|+++++.... .+....+ + .. ...|..+.
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~--------------------~~~~~~~-g--~~-~~~~~~~~ 195 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK--------------------AQSALKA-G--AW-QVINYREE 195 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHH--------------------HHHHHHH-T--CS-EEEETTTS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHH--------------------HHHHHHc-C--CC-EEEECCCc
Confidence 58899999999999999999999999999999875321 1111111 1 11 12466555
Q ss_pred HHHHHHhh---hcCCCEEEEccc
Q 011707 165 EFLSESFK---SFEPDAVVHFGE 184 (479)
Q Consensus 165 ~~~~~~~~---~~~~D~Vih~A~ 184 (479)
+..+++.+ ..++|+||+|+|
T Consensus 196 ~~~~~~~~~~~~~~~D~vi~~~g 218 (327)
T 1qor_A 196 DLVERLKEITGGKKVRVVYDSVG 218 (327)
T ss_dssp CHHHHHHHHTTTCCEEEEEECSC
T ss_pred cHHHHHHHHhCCCCceEEEECCc
Confidence 44444332 236999999997
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00046 Score=66.82 Aligned_cols=37 Identities=24% Similarity=0.221 Sum_probs=33.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+++|||+||+|.||...++.+...|++|+++++..
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~ 183 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTD 183 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3588999999999999999999999999999998753
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0006 Score=66.53 Aligned_cols=37 Identities=16% Similarity=0.197 Sum_probs=33.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+++|||+||+|.||..+++.+...|++|+++++..
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~ 205 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTE 205 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCh
Confidence 3578999999999999999999999999999998754
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0026 Score=59.85 Aligned_cols=125 Identities=17% Similarity=0.126 Sum_probs=73.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC---CCCCCccchhhhhhhhhcccCC-CceeEE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG---LDSLTPIASIHDRLRCWKSLTG-KNIELY 157 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~v~~v 157 (479)
.++..+|+|.|+ |.+|..+++.|++.|. +++++|...=...+.... ...+ .........+.+..+.. -.++.+
T Consensus 33 kL~~~~VlVvGa-GGlGs~va~~La~aGVG~i~lvD~D~Ve~sNL~Rq~~~~~di-G~~Ka~aa~~~L~~iNP~v~v~~~ 110 (292)
T 3h8v_A 33 KIRTFAVAIVGV-GGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPHQA-GLSKVQAAEHTLRNINPDVLFEVH 110 (292)
T ss_dssp GGGGCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBC------------CCT-TSBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HHhCCeEEEECc-CHHHHHHHHHHHHcCCCEEEEECCCccChhhcccccCChhhc-CchHHHHHHHHHHhhCCCcEEEEe
Confidence 456789999998 9999999999999995 788887643111111000 0000 01111122223333322 356677
Q ss_pred EcccCChHHHHHHhhh---------cCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEe
Q 011707 158 IGDICDFEFLSESFKS---------FEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKL 228 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~---------~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~ 228 (479)
..++++.+.+++.+.. .++|+||.+.- |...-..+.++|.+.+. .+|+.
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~DlVid~~D--------------------n~~~R~~in~~c~~~~~--Pli~~ 168 (292)
T 3h8v_A 111 NYNITTVENFQHFMDRISNGGLEEGKPVDLVLSCVD--------------------NFEARMTINTACNELGQ--TWMES 168 (292)
T ss_dssp CCCTTSHHHHHHHHHHHHHBSSSTTBCCSEEEECCS--------------------SHHHHHHHHHHHHHHTC--CEEEE
T ss_pred cccCCcHHHHHHHhhhhcccccccCCCCCEEEECCc--------------------chhhhhHHHHHHHHhCC--CEEEe
Confidence 7788776666666521 27999998742 44444567788888874 57776
Q ss_pred ecc
Q 011707 229 GTM 231 (479)
Q Consensus 229 SS~ 231 (479)
+..
T Consensus 169 gv~ 171 (292)
T 3h8v_A 169 GVS 171 (292)
T ss_dssp EEC
T ss_pred eee
Confidence 543
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00014 Score=65.48 Aligned_cols=34 Identities=32% Similarity=0.469 Sum_probs=31.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
|+|+|+||+|++|..+++.|++.|++|++++|..
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~ 34 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4799999999999999999999999999998854
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00021 Score=73.65 Aligned_cols=108 Identities=19% Similarity=0.177 Sum_probs=59.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++++++||||| |++|+.++..|++.|++|++++|..... .+..+.+ +..+ + ++.|
T Consensus 362 l~~k~vlV~Ga-GGig~aia~~L~~~G~~V~i~~R~~~~a----------------~~la~~~----~~~~--~--~~~d 416 (523)
T 2o7s_A 362 LASKTVVVIGA-GGAGKALAYGAKEKGAKVVIANRTYERA----------------LELAEAI----GGKA--L--SLTD 416 (523)
T ss_dssp ----CEEEECC-SHHHHHHHHHHHHHCC-CEEEESSHHHH----------------HHHHHHT----TC-C--E--ETTT
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHc----CCce--e--eHHH
Confidence 46789999999 7999999999999999999988754311 0111111 1111 1 1212
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCc------ccccccccccchhhhhhHHHH-HHHHHHHHHcC
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSA------PYSMIDRSRAVFTQHNNVIGT-LNVLFAMKEFR 220 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~------~~~~~~~~~~~~~~~~Nv~g~-~~ll~~a~~~g 220 (479)
+++ +....+|+||||+|.... +.......++..++++|+.+. -.+++.+++.|
T Consensus 417 ---l~~-~~~~~~DilVN~agvg~~~~~~~~~~~~~~~~~~~~v~Dvny~p~~T~ll~~a~~~G 476 (523)
T 2o7s_A 417 ---LDN-YHPEDGMVLANTTSMGMQPNVEETPISKDALKHYALVFDAVYTPRITRLLREAEESG 476 (523)
T ss_dssp ---TTT-C--CCSEEEEECSSTTCTTCTTCCSSCTTTGGGEEEEEECCCSSSSCHHHHHHHTTT
T ss_pred ---hhh-ccccCceEEEECCCCCCCCCCCCCCCChHHcCcCcEEEEEeeCCccCHHHHHHHHCC
Confidence 111 011148999999986321 111122334566788888653 24566666555
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0057 Score=58.57 Aligned_cols=117 Identities=15% Similarity=0.111 Sum_probs=74.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEE-Eccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELY-IGDI 161 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v-~~Dl 161 (479)
..++|.|+|+ |.+|..++..|+..|. +|+++|.......... .++.+. .... ...... ..|+
T Consensus 20 ~~~kV~ViGa-G~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a---------~DL~~~----~~~~-~~~~i~~t~d~ 84 (330)
T 3ldh_A 20 SYNKITVVGC-DAVGMADAISVLMKDLADEVALVDVMEDKLKGEM---------MDLEHG----SLFL-HTAKIVSGKDY 84 (330)
T ss_dssp CCCEEEEEST-THHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHH---------HHHHHH----GGGS-CCSEEEEESSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHH---------HHhhhh----hhcc-cCCeEEEcCCH
Confidence 3678999999 9999999999999986 8999998543211100 001111 0111 111222 2343
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
.+ ++ +.|+||-+||....+...+ ...+..|+.-.+.+.+.+.+.+....++.+|-
T Consensus 85 ~~-------~~--daDiVIitaG~p~kpG~tR-----~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN 139 (330)
T 3ldh_A 85 SV-------SA--GSKLVVITAGARQQEGESR-----LNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE 139 (330)
T ss_dssp CS-------CS--SCSEEEECCSCCCCSSCCT-----TGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred HH-------hC--CCCEEEEeCCCCCCCCCCH-----HHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC
Confidence 22 45 8999999999754322222 23567899999999999998887756776663
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.004 Score=57.50 Aligned_cols=125 Identities=18% Similarity=0.188 Sum_probs=71.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCC----CCCCccchhhhhhhhhcccC-CCceeEE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGL----DSLTPIASIHDRLRCWKSLT-GKNIELY 157 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-~~~v~~v 157 (479)
+++++|+|.|+ |.+|.++++.|++.|. +++++|...-...+..... ..+. ........+.+..+. .-.++.+
T Consensus 26 l~~~~VlvvG~-GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG-~~Ka~~~~~~l~~~np~~~v~~~ 103 (251)
T 1zud_1 26 LLDSQVLIIGL-GGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDID-RPKSQVSQQRLTQLNPDIQLTAL 103 (251)
T ss_dssp HHTCEEEEECC-STTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTT-SBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HhcCcEEEEcc-CHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCC-CHHHHHHHHHHHHHCCCCEEEEE
Confidence 35679999998 8899999999999996 7788876431111110000 0000 011111222222222 1245555
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccccc
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g 235 (479)
..+++ .+.+.++++ ++|+||.+.. |...-..+.++|.+.+ +.+|+.+..+.+|
T Consensus 104 ~~~~~-~~~~~~~~~--~~DvVi~~~d--------------------~~~~r~~l~~~~~~~~--~p~i~~~~~g~~G 156 (251)
T 1zud_1 104 QQRLT-GEALKDAVA--RADVVLDCTD--------------------NMATRQEINAACVALN--TPLITASAVGFGG 156 (251)
T ss_dssp CSCCC-HHHHHHHHH--HCSEEEECCS--------------------SHHHHHHHHHHHHHTT--CCEEEEEEEBTEE
T ss_pred eccCC-HHHHHHHHh--cCCEEEECCC--------------------CHHHHHHHHHHHHHhC--CCEEEEeccccce
Confidence 55554 356777787 6899998742 3333345667777776 3688877655444
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0025 Score=60.80 Aligned_cols=116 Identities=14% Similarity=0.008 Sum_probs=73.7
Q ss_pred cEEEEEcCCchhhHHHHHHHHhC-C--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 87 KRVMIIGGDGYCGWATALHLSNK-G--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~-G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
|+|.|+||+|.+|..++..|..+ + .+++++|.... .. ....++.+.. ........ .+
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~-~~----------------G~a~Dl~~~~-~~~~v~~~-~~- 60 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TP----------------GVAVDLSHIP-TAVKIKGF-SG- 60 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTT-HH----------------HHHHHHHTSC-SSEEEEEE-CS-
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCC-ch----------------hHHHHhhCCC-CCceEEEe-cC-
Confidence 58999999999999999999875 5 58899887541 10 1111222211 11222110 01
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
+...+.++ +.|+||.+||...-+...+ ...++.|..-.+.+.+.+.+.+.+..++.+|-
T Consensus 61 -~~~~~~~~--~aDivii~ag~~rkpG~~R-----~dll~~N~~I~~~i~~~i~~~~p~a~vlvvtN 119 (312)
T 3hhp_A 61 -EDATPALE--GADVVLISAGVARKPGMDR-----SDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (312)
T ss_dssp -SCCHHHHT--TCSEEEECCSCSCCTTCCH-----HHHHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred -CCcHHHhC--CCCEEEEeCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHHCCCcEEEEecC
Confidence 11244566 8999999999643222211 33578899999999999998887756776653
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00049 Score=66.92 Aligned_cols=37 Identities=14% Similarity=0.052 Sum_probs=33.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+++|||+||+|.||..+++.+...|++|+++++..
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~ 190 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSK 190 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3588999999999999999999999999999988753
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00076 Score=65.29 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=33.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+++|||+||+|.||..+++.+...|++|+++++..
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~ 184 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGA 184 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3588999999999999999999999999999998754
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00066 Score=66.32 Aligned_cols=37 Identities=16% Similarity=0.022 Sum_probs=33.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+++|||+||+|.||..+++.+...|++|+++++..
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~ 197 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQ 197 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3578999999999999999999999999999998753
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00084 Score=62.93 Aligned_cols=37 Identities=22% Similarity=0.323 Sum_probs=33.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+++++++|+|+ |.+|+.++..|++.|++|++++|..
T Consensus 116 ~l~~k~vlViGa-Gg~g~a~a~~L~~~G~~V~v~~R~~ 152 (271)
T 1nyt_A 116 IRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTV 152 (271)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHcCCEEEEEECCH
Confidence 356899999998 8899999999999999999998754
|
| >4h7p_A Malate dehydrogenase; ssgcid, structural G seattle structural genomics center for infectious disease, oxidoreductase; 1.30A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0048 Score=59.56 Aligned_cols=175 Identities=10% Similarity=0.071 Sum_probs=101.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-------eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCc-eeE
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-------EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKN-IEL 156 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-------~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~ 156 (479)
..-+|.|+||+|.||..|+-.|+.... ++..+|....-. .+.....++....... ...
T Consensus 23 ~~vKVaViGAaG~IG~~la~~la~~~l~~~~~~~eL~L~Di~~~~~--------------~~~Gva~DL~~~~~~~~~~~ 88 (345)
T 4h7p_A 23 SAVKVAVTGAAGQIGYALVPLIARGALLGPTTPVELRLLDIEPALK--------------ALAGVEAELEDCAFPLLDKV 88 (345)
T ss_dssp CCEEEEEESTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHH--------------HHHHHHHHHHHTTCTTEEEE
T ss_pred CCCEEEEECcCcHHHHHHHHHHHhccccCCCCccEEEEECCCCccc--------------cchhhhhhhhhcCccCCCcE
Confidence 456999999999999999998887532 678888643210 0011111222222121 222
Q ss_pred EEcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeecc---c
Q 011707 157 YIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTM---G 232 (479)
Q Consensus 157 v~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~---~ 232 (479)
+.++ ...++++ +.|+||-+||...-+...+ ...++.|..-.+.+.+...+.. ....++.+|-- .
T Consensus 89 ~~~~-----~~~~a~~--~advVvi~aG~prkpGmtR-----~DLl~~Na~I~~~~~~~i~~~a~~~~~vlvvsNPvd~~ 156 (345)
T 4h7p_A 89 VVTA-----DPRVAFD--GVAIAIMCGAFPRKAGMER-----KDLLEMNARIFKEQGEAIAAVAASDCRVVVVGNPANTN 156 (345)
T ss_dssp EEES-----CHHHHTT--TCSEEEECCCCCCCTTCCH-----HHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHH
T ss_pred EEcC-----ChHHHhC--CCCEEEECCCCCCCCCCCH-----HHHHHHhHHHHHHHHHHHHhhccCceEEEEeCCCcchH
Confidence 2221 2456777 8999999999754332222 2467899999999999988864 44355555531 1
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCC
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRT 302 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~ 302 (479)
+|-. .+. .+--..+....+.+-+-.-++-...+++.|++..-++-..|.|...
T Consensus 157 ~~i~-----~~~------------~~g~~~~r~i~~~t~LDs~R~~~~la~~~~v~~~~V~~~~V~G~HG 209 (345)
T 4h7p_A 157 ALIL-----LKS------------AQGKLNPRHVTAMTRLDHNRALSLLARKAGVPVSQVRNVIIWGNHS 209 (345)
T ss_dssp HHHH-----HHH------------TTTCSCGGGEEECCHHHHHHHHHHHHHHHTSCGGGEECCEEEBCSS
T ss_pred HHHH-----HHH------------ccCCCCcceeeeccchhHHHHHHHHHHHHCcChhheecceeecCCC
Confidence 1100 000 0001122344555666666666667777788777776556777643
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0034 Score=59.19 Aligned_cols=114 Identities=16% Similarity=0.096 Sum_probs=74.3
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcc---cCCCceeEEEccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS---LTGKNIELYIGDI 161 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~~Dl 161 (479)
|+|.|+|| |+||..++..|+.++. ++.++|........ ...++.+ ...........+
T Consensus 1 MKV~IiGa-G~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G----------------~a~DL~h~~~~~~~~~~i~~~~- 62 (294)
T 2x0j_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVG----------------EAMDLAHAAAGIDKYPKIVGGA- 62 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHH----------------HHHHHHHHHGGGTCCCEEEEES-
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCCCcchh----------------hhhhhhcccccCCCCCeEecCC-
Confidence 57999996 9999999999988873 79999875431111 1111211 111122222221
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
|.+ .++ +.|+||-.||...-+...+ ...++.|..-.+.+.+.+.+.+.+..++.+|-
T Consensus 63 -d~~----~~~--~aDvVvitAG~prkpGmtR-----~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN 119 (294)
T 2x0j_A 63 -DYS----LLK--GSEIIVVTAGLARKPGMTR-----LDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp -CGG----GGT--TCSEEEECCCCCCCSSSCH-----HHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred -CHH----HhC--CCCEEEEecCCCCCCCCch-----HHHHHHHHHHHHHHHHHHHhcCCceEEEEecC
Confidence 222 355 8999999999754333222 34678999999999999999988756666664
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00095 Score=63.15 Aligned_cols=117 Identities=17% Similarity=0.102 Sum_probs=74.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
|+|.|+|+ |.+|..++..|+..|+ +|+++|+........ ..+ +............+... +|
T Consensus 1 MkI~ViGa-G~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~------------~~d-l~~~~~~~~~~~~i~~t--~d- 63 (294)
T 1oju_A 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGE------------AMD-LAHAAAGIDKYPKIVGG--AD- 63 (294)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHH------------HHH-HHHHHHTTTCCCEEEEE--SC-
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEECChHHHHHH------------HHH-HHhhhhhcCCCCEEEEe--CC-
Confidence 58999999 9999999999999987 899999865321100 000 01111001112222221 12
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
.++++ +.|+||.+||....+...+ ...+..|..-.+.+.+.+.+.+.+..|+.+|-
T Consensus 64 ---~~a~~--~aDiVViaag~~~kpG~~R-----~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsN 119 (294)
T 1oju_A 64 ---YSLLK--GSEIIVVTAGLARKPGMTR-----LDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (294)
T ss_dssp ---GGGGT--TCSEEEECCCCCCCSSCCH-----HHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred ---HHHhC--CCCEEEECCCCCCCCCCcH-----HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence 34566 8999999998643222111 23567899999999999999887767777664
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0035 Score=59.83 Aligned_cols=112 Identities=15% Similarity=0.125 Sum_probs=67.4
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhccc---CCCceeEEE-ccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL---TGKNIELYI-GDI 161 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~-~Dl 161 (479)
++|.|+|| |++|..++..|+..|+ +|+++|+....... ...++.+. ......+.. .|
T Consensus 3 ~kI~VIGa-G~vG~~~a~~la~~g~~~v~L~Di~~~~~~g----------------~~~dl~~~~~~~~~~~~i~~t~d- 64 (309)
T 1ur5_A 3 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQG----------------KALDLYEASPIEGFDVRVTGTNN- 64 (309)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSSSHHHH----------------HHHHHHTTHHHHTCCCCEEEESC-
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCeEEEEeCCccHHHH----------------HHHhHHHhHhhcCCCeEEEECCC-
Confidence 68999999 9999999999999996 98888875421110 01111110 011222222 33
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
. +.++ +.|+||.++|....+.... ......|+...+.+.+.+.+.+.+ .+|.+.|
T Consensus 65 -----~-~a~~--~aD~Vi~a~g~p~~~g~~r-----~dl~~~n~~i~~~i~~~i~~~~p~-a~vi~~t 119 (309)
T 1ur5_A 65 -----Y-ADTA--NSDVIVVTSGAPRKPGMSR-----EDLIKVNADITRACISQAAPLSPN-AVIIMVN 119 (309)
T ss_dssp -----G-GGGT--TCSEEEECCCC-------------CHHHHHHHHHHHHHHHHHGGGCTT-CEEEECC
T ss_pred -----H-HHHC--CCCEEEEcCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHhhCCC-eEEEEcC
Confidence 2 3456 8999999998643221111 124567888888999999888766 4444444
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.011 Score=56.89 Aligned_cols=123 Identities=11% Similarity=0.044 Sum_probs=71.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+.++|.|+|| |.+|..++..|+..|+ +|+++|+........ ...+.+..... ....++.. .
T Consensus 8 ~~~kI~VIGa-G~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~---------~~~l~~~~~~~--~~~~~i~~-t----- 69 (331)
T 1pzg_A 8 RRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGK---------ALDLSHVTSVV--DTNVSVRA-E----- 69 (331)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHH---------HHHHHHHHHHT--TCCCCEEE-E-----
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECChhHHHHH---------HHHHHhhhhcc--CCCCEEEE-e-----
Confidence 3578999998 9999999999999998 999998864311110 00011111100 01112221 1
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEe
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKL 228 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~ 228 (479)
.+++++++ +.|+||-++|..........-..-......|+.-.+.+.+.+.+...+..++.+
T Consensus 70 -~d~~ea~~--~aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~ 131 (331)
T 1pzg_A 70 -YSYEAALT--GADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVV 131 (331)
T ss_dssp -CSHHHHHT--TCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred -CCHHHHhC--CCCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 22455677 899999999854321110000001223567888888999888887766455544
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0015 Score=63.88 Aligned_cols=37 Identities=19% Similarity=0.072 Sum_probs=33.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+++|||+||+|.||..+++.+...|++|+++++..
T Consensus 162 ~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~ 198 (362)
T 2c0c_A 162 SEGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSD 198 (362)
T ss_dssp CTTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCH
Confidence 3578999999999999999999999999999988753
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=97.02 E-value=0.001 Score=64.35 Aligned_cols=70 Identities=14% Similarity=0.086 Sum_probs=55.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.++++|.|+ |.+|..+++.|.++|+ |+++|+... +.+ +. ..++.++.||.+|++
T Consensus 115 ~~~viI~G~-G~~g~~l~~~L~~~g~-v~vid~~~~--------------------~~~-~~---~~~~~~i~gd~~~~~ 168 (336)
T 1lnq_A 115 SRHVVICGW-SESTLECLRELRGSEV-FVLAEDENV--------------------RKK-VL---RSGANFVHGDPTRVS 168 (336)
T ss_dssp -CEEEEESC-CHHHHHHHTTGGGSCE-EEEESCGGG--------------------HHH-HH---HTTCEEEESCTTSHH
T ss_pred cCCEEEECC-cHHHHHHHHHHHhCCc-EEEEeCChh--------------------hhh-HH---hCCcEEEEeCCCCHH
Confidence 458999997 9999999999999999 999886543 111 11 147889999999999
Q ss_pred HHHHH-hhhcCCCEEEEcc
Q 011707 166 FLSES-FKSFEPDAVVHFG 183 (479)
Q Consensus 166 ~~~~~-~~~~~~D~Vih~A 183 (479)
.++++ ++ +.|.||-+.
T Consensus 169 ~L~~a~i~--~a~~vi~~~ 185 (336)
T 1lnq_A 169 DLEKANVR--GARAVIVDL 185 (336)
T ss_dssp HHHHTCST--TEEEEEECC
T ss_pred HHHhcChh--hccEEEEcC
Confidence 99887 55 788888664
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0033 Score=60.28 Aligned_cols=113 Identities=17% Similarity=0.232 Sum_probs=69.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccC--CCceeEEEccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT--GKNIELYIGDI 161 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl 161 (479)
.++|.|+|+ |++|..++..|+..|. +|+++|........ ....+.+.. ...+.+. .
T Consensus 7 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g----------------~~~dl~~~~~~~~~~~i~-~-- 66 (318)
T 1y6j_A 7 RSKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIG----------------EAMDINHGLPFMGQMSLY-A-- 66 (318)
T ss_dssp CCCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCH----------------HHHHHTTSCCCTTCEEEC----
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChHHHHH----------------HHHHHHHhHHhcCCeEEE-E--
Confidence 468999998 9999999999999987 89999975421110 011111110 1123222 1
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
.+ .++++ +.|+||.+++...-+.... ...+..|+.....+.+.+.+.+.+..++.+|
T Consensus 67 ~~----~~a~~--~aDvVii~~g~p~k~g~~r-----~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (318)
T 1y6j_A 67 GD----YSDVK--DCDVIVVTAGANRKPGETR-----LDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 123 (318)
T ss_dssp -C----GGGGT--TCSEEEECCCC------CH-----HHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred CC----HHHhC--CCCEEEEcCCCCCCCCcCH-----HHHHHhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence 12 23466 8999999998633111111 2346789999999999999887765566543
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0012 Score=64.14 Aligned_cols=36 Identities=11% Similarity=0.004 Sum_probs=32.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+++|||+||+|.+|..+++.+...|++|+++++..
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~ 201 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSE 201 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 578999999999999999999999999999998753
|
| >3gxh_A Putative phosphatase (DUF442); YP_001181608.1, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.40A {Shewanella putrefaciens cn-32} PDB: 3gxg_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00093 Score=57.04 Aligned_cols=76 Identities=17% Similarity=-0.010 Sum_probs=50.3
Q ss_pred chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh--HHHHHHhhh
Q 011707 96 GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF--EFLSESFKS 173 (479)
Q Consensus 96 G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~--~~~~~~~~~ 173 (479)
|.++..+++.|++.|++|++.++....... .++..+... ..+.....+.+|++++ ++++++++.
T Consensus 26 ~~p~~a~a~~La~~Ga~vvi~~r~~~e~~~-------------~~~~~~~~~-~~G~~~~~i~~Dv~~~~~~~v~~~~~~ 91 (157)
T 3gxh_A 26 GLPNEQQFSLLKQAGVDVVINLMPDSSKDA-------------HPDEGKLVT-QAGMDYVYIPVDWQNPKVEDVEAFFAA 91 (157)
T ss_dssp BCCCHHHHHHHHHTTCCEEEECSCTTSTTS-------------CTTHHHHHH-HTTCEEEECCCCTTSCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCcccccc-------------cccHHHHHH-HcCCeEEEecCCCCCCCHHHHHHHHHH
Confidence 679999999999999999887664321100 000111111 1245677788999999 888776653
Q ss_pred ----cCCCEEEEcccc
Q 011707 174 ----FEPDAVVHFGEQ 185 (479)
Q Consensus 174 ----~~~D~Vih~A~~ 185 (479)
.+-|++|||||.
T Consensus 92 i~~~~G~dVLVnnAgg 107 (157)
T 3gxh_A 92 MDQHKGKDVLVHCLAN 107 (157)
T ss_dssp HHHTTTSCEEEECSBS
T ss_pred HHhcCCCCEEEECCCC
Confidence 234999999985
|
| >1p9o_A Phosphopantothenoylcysteine synthetase; ligase; 2.30A {Homo sapiens} SCOP: c.72.3.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0019 Score=61.16 Aligned_cols=35 Identities=29% Similarity=0.490 Sum_probs=30.2
Q ss_pred CCcE-EEEE-cCC-----------------chhhHHHHHHHHhCCCeEEEEecc
Q 011707 85 KAKR-VMII-GGD-----------------GYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 85 ~~~~-vLVt-Gat-----------------G~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.|++ |||| |+| |-.|.++++.++++|++|+.+.+.
T Consensus 35 ~gk~~VLITaGgT~EpID~DpVRfItN~SSGkmG~aiAe~~~~~Ga~V~lv~g~ 88 (313)
T 1p9o_A 35 QGRRVVLVTSGGTKVPLEARPVRFLDNFSSGRRGATSAEAFLAAGYGVLFLYRA 88 (313)
T ss_dssp TTCCEEEEEESBCEEESSSSCSEEEEECCCCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred cCCeEEEEeCCCcccccCCCceeEecCCCCcHHHHHHHHHHHHCCCEEEEEecC
Confidence 4666 8888 566 889999999999999999998764
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0035 Score=59.78 Aligned_cols=114 Identities=15% Similarity=0.079 Sum_probs=71.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcc---cCCCceeEEEccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS---LTGKNIELYIGDI 161 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~~Dl 161 (479)
|+|.|+|+ |.+|..++..|+..|. +|+++|+....... ...++.+ .......+...|
T Consensus 1 Mkv~ViGa-G~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g----------------~a~DL~~~~~~~~~~~~v~~~~- 62 (314)
T 3nep_X 1 MKVTVIGA-GNVGATVAECVARQDVAKEVVMVDIKDGMPQG----------------KALDMRESSPIHGFDTRVTGTN- 62 (314)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSSEEEEECSSTTHHHH----------------HHHHHHHHHHHHTCCCEEEEES-
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCchHHHHH----------------HHHHHhccccccCCCcEEEECC-
Confidence 58999997 9999999999999886 89999985431111 0111111 111223332222
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
+ .+.++ +.|+||.+||....+...+ ...+..|+.-.+.+.+.+.+.+.+..++.+|-
T Consensus 63 -~----~~a~~--~aDvVii~ag~~~kpG~~R-----~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN 119 (314)
T 3nep_X 63 -D----YGPTE--DSDVCIITAGLPRSPGMSR-----DDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN 119 (314)
T ss_dssp -S----SGGGT--TCSEEEECCCC-------C-----HHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred -C----HHHhC--CCCEEEECCCCCCCCCCCH-----HHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC
Confidence 2 23455 8999999998643222111 23568899999999999999887766776663
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00067 Score=63.56 Aligned_cols=34 Identities=21% Similarity=0.262 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhC-CCeEEE-Eec
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNK-GYEVAI-VDS 118 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~-~dr 118 (479)
++++|.|+|++|.+|+.+++.+++. |+++++ +|+
T Consensus 4 ~~mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~ 39 (273)
T 1dih_A 4 ANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALER 39 (273)
T ss_dssp CBEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECC
T ss_pred CCcEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 4579999999999999999998855 788774 454
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0019 Score=61.34 Aligned_cols=77 Identities=10% Similarity=0.145 Sum_probs=51.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.+.+++|+|+|+ |.+|+.++..|++.|. +|++++|.... ++.+.+..+.... ++
T Consensus 138 ~l~~~~vlVlGa-Gg~g~aia~~L~~~G~~~V~v~nR~~~k--------------------a~~la~~~~~~~~----~~ 192 (297)
T 2egg_A 138 TLDGKRILVIGA-GGGARGIYFSLLSTAAERIDMANRTVEK--------------------AERLVREGDERRS----AY 192 (297)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECSSHHH--------------------HHHHHHHSCSSSC----CE
T ss_pred CCCCCEEEEECc-HHHHHHHHHHHHHCCCCEEEEEeCCHHH--------------------HHHHHHHhhhccC----ce
Confidence 356899999998 8899999999999998 89998875431 1111111111100 12
Q ss_pred CChHHHHHHhhhcCCCEEEEccccc
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQR 186 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~ 186 (479)
.+.+++.+.+. ++|+||++.+..
T Consensus 193 ~~~~~~~~~~~--~aDivIn~t~~~ 215 (297)
T 2egg_A 193 FSLAEAETRLA--EYDIIINTTSVG 215 (297)
T ss_dssp ECHHHHHHTGG--GCSEEEECSCTT
T ss_pred eeHHHHHhhhc--cCCEEEECCCCC
Confidence 23345666676 799999998753
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0078 Score=58.30 Aligned_cols=126 Identities=17% Similarity=0.058 Sum_probs=75.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC----CCCCCccchhhhhhhhhcccC-CCceeEE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG----LDSLTPIASIHDRLRCWKSLT-GKNIELY 157 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~v~~v 157 (479)
++..+|+|.|+ |++|..+++.|++.|. +++++|...=...+.... ...+. ........+.+.++. .-.+..+
T Consensus 34 L~~~~VlivG~-GGlG~~ia~~La~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG-~~Ka~~~~~~l~~lnp~v~v~~~ 111 (346)
T 1y8q_A 34 LRASRVLLVGL-KGLGAEIAKNLILAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVG-RNRAEASLERAQNLNPMVDVKVD 111 (346)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCSSCGGGCTTSCSSCTT-SBHHHHHHHHHHHTCTTSEEEEE
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEECCCcchhhCCCCCccccccCc-CCHHHHHHHHHHhHCCCeEEEEE
Confidence 34679999997 9999999999999997 788887532111110000 00010 111222223333332 2246666
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCC
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTP 237 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~ 237 (479)
..++.+ ...+.++ ++|+||.+.. |...-..+.++|.+.+ ..||..++.+.+|.-
T Consensus 112 ~~~~~~--~~~~~~~--~~dvVv~~~d--------------------~~~~r~~ln~~~~~~~--ip~i~~~~~G~~G~v 165 (346)
T 1y8q_A 112 TEDIEK--KPESFFT--QFDAVCLTCC--------------------SRDVIVKVDQICHKNS--IKFFTGDVFGYHGYT 165 (346)
T ss_dssp CSCGGG--CCHHHHT--TCSEEEEESC--------------------CHHHHHHHHHHHHHTT--CEEEEEEEEBTEEEE
T ss_pred ecccCc--chHHHhc--CCCEEEEcCC--------------------CHHHHHHHHHHHHHcC--CCEEEEeecccEEEE
Confidence 666643 2355666 7899997642 3444456778888887 468888887777754
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0083 Score=57.44 Aligned_cols=117 Identities=16% Similarity=0.187 Sum_probs=72.7
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+.++|.|+|| |.+|..++..|+..| .+|.++|........ ...+ +.......+..+.+.. |
T Consensus 5 ~~~KI~IIGa-G~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g------------~~~d-l~~~~~~~~~~~~v~~-~-- 67 (317)
T 3d0o_A 5 KGNKVVLIGN-GAVGSSYAFSLVNQSIVDELVIIDLDTEKVRG------------DVMD-LKHATPYSPTTVRVKA-G-- 67 (317)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHCSCSEEEEECSCHHHHHH------------HHHH-HHHHGGGSSSCCEEEE-C--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHhhh------------hhhh-HHhhhhhcCCCeEEEe-C--
Confidence 4579999999 999999999999888 489999875321110 0000 0111112112333332 2
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ .++++ +.|+||.+++....+.... ...+..|+.-...+.+.+.+.+.+..++.+|
T Consensus 68 ~----~~a~~--~aDvVvi~ag~~~~~g~~r-----~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 123 (317)
T 3d0o_A 68 E----YSDCH--DADLVVICAGAAQKPGETR-----LDLVSKNLKIFKSIVGEVMASKFDGIFLVAT 123 (317)
T ss_dssp C----GGGGT--TCSEEEECCCCCCCTTCCH-----HHHHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred C----HHHhC--CCCEEEECCCCCCCCCCcH-----HHHHHHHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 2 33466 8999999998643222111 2345778888899999998887775666644
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00042 Score=65.62 Aligned_cols=36 Identities=25% Similarity=0.434 Sum_probs=31.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+++|+++|||+ |.+|+.++..|++.| +|++++|..
T Consensus 125 ~l~~k~vlV~Ga-GgiG~aia~~L~~~G-~V~v~~r~~ 160 (287)
T 1nvt_A 125 RVKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTV 160 (287)
T ss_dssp CCCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSH
T ss_pred CcCCCEEEEECc-hHHHHHHHHHHHHCC-CEEEEECCH
Confidence 356899999998 599999999999999 999988754
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00064 Score=57.04 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=30.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
+++|+|+|+ |.+|..+++.|.+.|++|++++|..
T Consensus 21 ~~~v~iiG~-G~iG~~~a~~l~~~g~~v~v~~r~~ 54 (144)
T 3oj0_A 21 GNKILLVGN-GMLASEIAPYFSYPQYKVTVAGRNI 54 (144)
T ss_dssp CCEEEEECC-SHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCH
Confidence 789999996 9999999999999999988888754
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0016 Score=63.28 Aligned_cols=37 Identities=22% Similarity=0.242 Sum_probs=33.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+++|||+||+|.||...++.+...|++|+++++..
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~ 194 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRT 194 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3588999999999999999999999999999998754
|
| >1y8q_B Anthracycline-, ubiquitin-like 2 activating enzyme E1B; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_B* 3kyc_B* 3kyd_B* 2px9_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.01 Score=61.78 Aligned_cols=126 Identities=17% Similarity=0.165 Sum_probs=75.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC----CCCCCccchhhhhhhhhcccC-CCceeEEE
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG----LDSLTPIASIHDRLRCWKSLT-GKNIELYI 158 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~ 158 (479)
...+|||.|+ |++|..+++.|++.|. +++++|...=...+.... ...+. ........+.+..+. .-.++.+.
T Consensus 16 ~~s~VlVVGa-GGLGsevak~La~aGVG~ItlvD~D~Ve~SNLnRQflf~~~dVG-k~KAeaaa~~L~~iNP~v~V~a~~ 93 (640)
T 1y8q_B 16 AGGRVLVVGA-GGIGCELLKNLVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVG-RSKAQVAKESVLQFYPKANIVAYH 93 (640)
T ss_dssp HHCEEEEECC-SHHHHHHHHHHHHHTCCEEEEEECCBCCGGGGGTCTTCCGGGTT-SBHHHHHHHHHHTTCTTCEEEEEE
T ss_pred hcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEecCCEEChhhcCCCcCCChhHcC-hHHHHHHHHHHHHHCCCCeEEEEe
Confidence 4579999998 9999999999999996 788887643111111000 00011 011111222333332 23667777
Q ss_pred cccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 159 GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
.++++.....+.+. ++|+||.+.. |+..-..+.++|.+.++ .+|+.++.+.+|.
T Consensus 94 ~~i~~~~~~~~~~~--~~DlVvda~D--------------------n~~aR~~ln~~c~~~~i--PlI~~g~~G~~G~ 147 (640)
T 1y8q_B 94 DSIMNPDYNVEFFR--QFILVMNALD--------------------NRAARNHVNRMCLAADV--PLIESGTAGYLGQ 147 (640)
T ss_dssp SCTTSTTSCHHHHT--TCSEEEECCS--------------------CHHHHHHHHHHHHHHTC--CEEEEEEETTEEE
T ss_pred cccchhhhhHhhhc--CCCEEEECCC--------------------CHHHHHHHHHHHHHcCC--CEEEEEEecccce
Confidence 88765432345666 7999998742 45555567788888873 5777776655443
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0028 Score=61.63 Aligned_cols=35 Identities=9% Similarity=0.005 Sum_probs=31.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
+++|||+||+|.||...++.+...|++|+++++..
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~ 199 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRD 199 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCG
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 37999999999999999999988999999998654
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.0081 Score=57.48 Aligned_cols=115 Identities=17% Similarity=0.194 Sum_probs=70.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++|.|+|| |.+|..++..|+..+. +|+++|+........ . ..+....... ..+.+.. | +
T Consensus 5 ~~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~------------~-~dl~~~~~~~-~~~~v~~-~--~ 66 (318)
T 1ez4_A 5 HQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGD------------A-LDLEDAQAFT-APKKIYS-G--E 66 (318)
T ss_dssp BCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHH------------H-HHHHGGGGGS-CCCEEEE-C--C
T ss_pred CCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHH------------H-HHHHHHHHhc-CCeEEEE-C--C
Confidence 368999999 9999999999998875 899999854211110 0 0011111111 2333332 2 2
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
.++++ +.|+||..++...-+.... ...+..|+.....+.+.+.+.+....++.+|
T Consensus 67 ----~~a~~--~aDvVii~ag~~~~~g~~R-----~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 121 (318)
T 1ez4_A 67 ----YSDCK--DADLVVITAGAPQKPGESR-----LDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (318)
T ss_dssp ----GGGGT--TCSEEEECCCC---------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred ----HHHhC--CCCEEEECCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 23466 8999999998643222111 1245779999999999999988776777664
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0024 Score=61.82 Aligned_cols=35 Identities=26% Similarity=0.164 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+++|||+|| |.+|..+++.+...|++|+++++..
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~~~a~~~Ga~Vi~~~~~~ 198 (339)
T 1rjw_A 164 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGD 198 (339)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 5789999999 7799999999999999999988753
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0093 Score=56.73 Aligned_cols=112 Identities=14% Similarity=0.164 Sum_probs=66.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccC--CCceeEEEcccC
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT--GKNIELYIGDIC 162 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~ 162 (479)
|+|.|+|| |.+|..++..|+..|+ +|+++|+....... ....+.+.. .....+...
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~g~~~eV~L~D~~~~~~~~----------------~~~~l~~~~~~~~~~~i~~~--- 60 (304)
T 2v6b_A 1 MKVGVVGT-GFVGSTAAFALVLRGSCSELVLVDRDEDRAQA----------------EAEDIAHAAPVSHGTRVWHG--- 60 (304)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHH----------------HHHHHTTSCCTTSCCEEEEE---
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHH----------------HHHhhhhhhhhcCCeEEEEC---
Confidence 57999998 9999999999999998 99999986431110 011111100 012222222
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+. +.++ +.|+||.+++....+.... ...+..|+...+.+++.+.+.+.+..++.+|
T Consensus 61 ~~----~a~~--~aDvVIi~~~~~~~~g~~r-----~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~t 116 (304)
T 2v6b_A 61 GH----SELA--DAQVVILTAGANQKPGESR-----LDLLEKNADIFRELVPQITRAAPDAVLLVTS 116 (304)
T ss_dssp CG----GGGT--TCSEEEECC-----------------CHHHHHHHHHHHHHHHHHHCSSSEEEECS
T ss_pred CH----HHhC--CCCEEEEcCCCCCCCCCcH-----HHHHHhHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 22 2456 8999999997533221111 1245679999999999888876664555544
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0088 Score=58.12 Aligned_cols=121 Identities=17% Similarity=0.088 Sum_probs=71.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC----CCCCCccchhhhhhhhhcccC-CCceeEE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG----LDSLTPIASIHDRLRCWKSLT-GKNIELY 157 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~v~~v 157 (479)
+++++|+|.|+ |.+|..+++.|++.|. +++++|...-...+.... ...+. ........+.+..+. .-.++.+
T Consensus 116 L~~~~VlvvG~-GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~Rq~l~~~~diG-~~Ka~~~~~~l~~~np~v~v~~~ 193 (353)
T 3h5n_A 116 LKNAKVVILGC-GGIGNHVSVILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVG-KNKTEVIKRELLKRNSEISVSEI 193 (353)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEEECCBCCGGGGGTCTTCCGGGTT-SBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHhCCCCeEEEECCCcCcccccccccCCChHHCC-ChHHHHHHHHHHHHCCCCeEEEe
Confidence 45789999998 9999999999999996 788888643211111100 00000 011111222233322 2356777
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHH-HHHHHHHHHHHcCCcceEEEeecc
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI-GTLNVLFAMKEFRQECHLVKLGTM 231 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~-g~~~ll~~a~~~g~~~~~V~~SS~ 231 (479)
..++++...+.+ ++ ++|+||.+.. |.. .-..+.++|.+.++ .+|+.+..
T Consensus 194 ~~~i~~~~~~~~-~~--~~DlVvd~~D--------------------n~~~~r~~ln~~c~~~~~--p~i~~~~~ 243 (353)
T 3h5n_A 194 ALNINDYTDLHK-VP--EADIWVVSAD--------------------HPFNLINWVNKYCVRANQ--PYINAGYV 243 (353)
T ss_dssp ECCCCSGGGGGG-SC--CCSEEEECCC--------------------CSTTHHHHHHHHHHHTTC--CEEEEEEE
T ss_pred ecccCchhhhhH-hc--cCCEEEEecC--------------------ChHHHHHHHHHHHHHhCC--CEEEEEEe
Confidence 777776654555 66 7999998752 222 22345578888873 57776553
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0025 Score=62.36 Aligned_cols=76 Identities=26% Similarity=0.332 Sum_probs=52.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++++|+|+|+ |.+|..+++.|...|.+|+++|+.... ++.........+.. +..+
T Consensus 165 l~~~~VlViGa-GgvG~~aa~~a~~~Ga~V~v~dr~~~r--------------------~~~~~~~~~~~~~~---~~~~ 220 (361)
T 1pjc_A 165 VKPGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVER--------------------LSYLETLFGSRVEL---LYSN 220 (361)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HHHHHHHHGGGSEE---EECC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHH--------------------HHHHHHhhCceeEe---eeCC
Confidence 45689999999 999999999999999999999986431 11111111112212 2234
Q ss_pred hHHHHHHhhhcCCCEEEEcccc
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQ 185 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~ 185 (479)
.+.+.+.+. ++|+||++++.
T Consensus 221 ~~~~~~~~~--~~DvVI~~~~~ 240 (361)
T 1pjc_A 221 SAEIETAVA--EADLLIGAVLV 240 (361)
T ss_dssp HHHHHHHHH--TCSEEEECCCC
T ss_pred HHHHHHHHc--CCCEEEECCCc
Confidence 556777777 79999999875
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0015 Score=62.99 Aligned_cols=37 Identities=11% Similarity=0.010 Sum_probs=33.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+++|||+||+|.||...++.+...|++|+++++..
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~ 175 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSP 175 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3588999999999999999999998999999998753
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0082 Score=57.64 Aligned_cols=114 Identities=15% Similarity=0.140 Sum_probs=71.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhccc--CCCceeEEEcc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL--TGKNIELYIGD 160 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~D 160 (479)
+.++|.|+|| |.+|..++..|+..+. +|+++|+....... ...++.+. ....+.+.. |
T Consensus 8 ~~~KI~IiGa-G~vG~~la~~l~~~~~~~el~L~Di~~~~~~g----------------~~~dl~~~~~~~~~~~i~~-~ 69 (326)
T 2zqz_A 8 DHQKVILVGD-GAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKG----------------DAIDLSNALPFTSPKKIYS-A 69 (326)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSCHHHHHH----------------HHHHHHTTGGGSCCCEEEE-C
T ss_pred CCCEEEEECC-CHHHHHHHHHHHcCCCCCEEEEEeCCchHhHH----------------HHHHHHHHHHhcCCeEEEE-C
Confidence 3578999999 9999999999988875 89999875421111 01111111 012333332 2
Q ss_pred cCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ .++++ +.|+||..++...-+.... ...+..|+.-...+.+.+.+.+....++.+|
T Consensus 70 --~----~~a~~--~aDvVii~ag~~~k~g~~R-----~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 125 (326)
T 2zqz_A 70 --E----YSDAK--DADLVVITAGAPQKPGETR-----LDLVNKNLKILKSIVDPIVDSGFNGIFLVAA 125 (326)
T ss_dssp --C----GGGGG--GCSEEEECCCCC-----CH-----HHHHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred --C----HHHhC--CCCEEEEcCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 2 23466 8999999998643222111 2346779999999999998888776777664
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0015 Score=64.01 Aligned_cols=74 Identities=14% Similarity=0.090 Sum_probs=52.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhc-ccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK-SLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~Dl~d 163 (479)
.+.+|||+|+ |.||...++.+...|++|+++++.... .+... .+ +... ..|..+
T Consensus 187 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~~~--------------------~~~~~~~l---Ga~~-v~~~~~ 241 (366)
T 1yqd_A 187 PGKHIGIVGL-GGLGHVAVKFAKAFGSKVTVISTSPSK--------------------KEEALKNF---GADS-FLVSRD 241 (366)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCGGG--------------------HHHHHHTS---CCSE-EEETTC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHH--------------------HHHHHHhc---CCce-EEeccC
Confidence 5789999996 999999999999999999998875431 11111 11 1211 246666
Q ss_pred hHHHHHHhhhcCCCEEEEcccc
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQ 185 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~ 185 (479)
.+.+.++.. ++|+||+++|.
T Consensus 242 ~~~~~~~~~--~~D~vid~~g~ 261 (366)
T 1yqd_A 242 QEQMQAAAG--TLDGIIDTVSA 261 (366)
T ss_dssp HHHHHHTTT--CEEEEEECCSS
T ss_pred HHHHHHhhC--CCCEEEECCCc
Confidence 666666654 79999999874
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0061 Score=59.57 Aligned_cols=78 Identities=21% Similarity=0.171 Sum_probs=50.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCe-EEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYE-VAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.+.+|||+|+ |.+|...++.+...|.+ |+++++... +.+...++ ...+..+..|-.+
T Consensus 179 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~~--------------------~~~~a~~l-~~~~~~~~~~~~~ 236 (363)
T 3m6i_A 179 LGDPVLICGA-GPIGLITMLCAKAAGACPLVITDIDEG--------------------RLKFAKEI-CPEVVTHKVERLS 236 (363)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEEESCHH--------------------HHHHHHHH-CTTCEEEECCSCC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCHH--------------------HHHHHHHh-chhcccccccccc
Confidence 4789999998 99999999988888997 888876432 22222223 2333333444334
Q ss_pred hHHHHHHh----hhcCCCEEEEccc
Q 011707 164 FEFLSESF----KSFEPDAVVHFGE 184 (479)
Q Consensus 164 ~~~~~~~~----~~~~~D~Vih~A~ 184 (479)
.+++.+.+ ...++|+||+++|
T Consensus 237 ~~~~~~~v~~~t~g~g~Dvvid~~g 261 (363)
T 3m6i_A 237 AEESAKKIVESFGGIEPAVALECTG 261 (363)
T ss_dssp HHHHHHHHHHHTSSCCCSEEEECSC
T ss_pred hHHHHHHHHHHhCCCCCCEEEECCC
Confidence 44443333 2237999999987
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0031 Score=61.98 Aligned_cols=76 Identities=22% Similarity=0.219 Sum_probs=54.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
..+++|+|+|+ |.||..+++.|...|.+|+++|+.... ++......+..+ ..+..+
T Consensus 166 l~g~~V~ViG~-G~iG~~~a~~a~~~Ga~V~~~d~~~~~--------------------l~~~~~~~g~~~---~~~~~~ 221 (377)
T 2vhw_A 166 VEPADVVVIGA-GTAGYNAARIANGMGATVTVLDINIDK--------------------LRQLDAEFCGRI---HTRYSS 221 (377)
T ss_dssp BCCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HHHHHHHTTTSS---EEEECC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCHHH--------------------HHHHHHhcCCee---EeccCC
Confidence 56899999998 999999999999999999999985431 111111111222 223445
Q ss_pred hHHHHHHhhhcCCCEEEEcccc
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQ 185 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~ 185 (479)
.+.+.+++. ++|+||.+++.
T Consensus 222 ~~~l~~~l~--~aDvVi~~~~~ 241 (377)
T 2vhw_A 222 AYELEGAVK--RADLVIGAVLV 241 (377)
T ss_dssp HHHHHHHHH--HCSEEEECCCC
T ss_pred HHHHHHHHc--CCCEEEECCCc
Confidence 667778887 78999998874
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0036 Score=63.12 Aligned_cols=36 Identities=25% Similarity=0.179 Sum_probs=32.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
..+++|||+||+|.||...++.+...|.+|+++++.
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~ 254 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSS 254 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCC
Confidence 468899999999999999999999999999988864
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0042 Score=57.92 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhC-CCeEEEE-ecc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNK-GYEVAIV-DSL 119 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~-dr~ 119 (479)
+++++|.|+||+|.+|+.+++.+.+. +++++++ |+.
T Consensus 5 M~mikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~ 42 (272)
T 4f3y_A 5 MSSMKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRT 42 (272)
T ss_dssp -CCEEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCT
T ss_pred ccccEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEec
Confidence 34689999999999999999999876 6777764 543
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.00067 Score=63.91 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=33.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIR 121 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~ 121 (479)
..+++++||+|+ |++|+.++..|++.|. +|++++|...
T Consensus 124 ~l~~k~vlVlGa-GG~g~aia~~L~~~G~~~v~i~~R~~~ 162 (283)
T 3jyo_A 124 NAKLDSVVQVGA-GGVGNAVAYALVTHGVQKLQVADLDTS 162 (283)
T ss_dssp TCCCSEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSSHH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEECCHH
Confidence 457899999998 9999999999999998 7999887543
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0031 Score=61.28 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=32.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+|||+||+|.+|...++.+...|++|+++++..
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~ 185 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRN 185 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 578999999999999999999999999999988743
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0053 Score=62.00 Aligned_cols=73 Identities=25% Similarity=0.345 Sum_probs=57.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.|+|+|.|+ |-+|.+|++.|.++|++|+++|.... +++.+... .++..+.||-++++
T Consensus 3 ~M~iiI~G~-G~vG~~la~~L~~~~~~v~vId~d~~--------------------~~~~~~~~--~~~~~i~Gd~~~~~ 59 (461)
T 4g65_A 3 AMKIIILGA-GQVGGTLAENLVGENNDITIVDKDGD--------------------RLRELQDK--YDLRVVNGHASHPD 59 (461)
T ss_dssp CEEEEEECC-SHHHHHHHHHTCSTTEEEEEEESCHH--------------------HHHHHHHH--SSCEEEESCTTCHH
T ss_pred cCEEEEECC-CHHHHHHHHHHHHCCCCEEEEECCHH--------------------HHHHHHHh--cCcEEEEEcCCCHH
Confidence 588999998 99999999999999999999997543 22222211 25788999999999
Q ss_pred HHHHHhhhcCCCEEEEc
Q 011707 166 FLSESFKSFEPDAVVHF 182 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~ 182 (479)
.++++=-+ ..|.+|-+
T Consensus 60 ~L~~Agi~-~ad~~ia~ 75 (461)
T 4g65_A 60 VLHEAGAQ-DADMLVAV 75 (461)
T ss_dssp HHHHHTTT-TCSEEEEC
T ss_pred HHHhcCCC-cCCEEEEE
Confidence 99887432 68998844
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=96.66 E-value=0.002 Score=62.45 Aligned_cols=37 Identities=8% Similarity=-0.000 Sum_probs=33.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+++|||+||+|.||...++.+...|++|+++++..
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~ 179 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNN 179 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3588999999999999999998888899999998754
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0059 Score=58.13 Aligned_cols=85 Identities=13% Similarity=0.149 Sum_probs=53.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..+++++||+|+ |++|+.++..|++.|. +|+++.|...... ...+..+.+.... +......++
T Consensus 145 ~l~gk~~lVlGA-GGaaraia~~L~~~G~~~v~v~nRt~~~~~-------------~a~~la~~~~~~~--~~~v~~~~~ 208 (312)
T 3t4e_A 145 DMRGKTMVLLGA-GGAATAIGAQAAIEGIKEIKLFNRKDDFFE-------------KAVAFAKRVNENT--DCVVTVTDL 208 (312)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTHHH-------------HHHHHHHHHHHHS--SCEEEEEET
T ss_pred CcCCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEECCCchHH-------------HHHHHHHHhhhcc--CcceEEech
Confidence 457899999997 9999999999999998 8999888622100 0011111121111 222333455
Q ss_pred CChHHHHHHhhhcCCCEEEEcccc
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQ 185 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~ 185 (479)
.+.+.+.+.+. .+|+|||+...
T Consensus 209 ~~l~~~~~~l~--~~DiIINaTp~ 230 (312)
T 3t4e_A 209 ADQHAFTEALA--SADILTNGTKV 230 (312)
T ss_dssp TCHHHHHHHHH--HCSEEEECSST
T ss_pred HhhhhhHhhcc--CceEEEECCcC
Confidence 55444556666 68999998643
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.011 Score=56.61 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSL 119 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~ 119 (479)
+++++|+|.|+ |++|.++++.|++.|. +++++|..
T Consensus 32 L~~~~VlIvGa-GGlGs~va~~La~aGVg~ItlvD~D 67 (340)
T 3rui_A 32 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNG 67 (340)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HhCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEecCC
Confidence 45789999998 9999999999999996 78888764
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0028 Score=61.59 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=32.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~ 120 (479)
.+++|||+||+|.||..+++.+... |++|+++++..
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~ 206 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE 206 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 5789999999999999999999999 99999988753
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0024 Score=62.27 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=33.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+++|||+||+|.||...++.+...|++|+++++..
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~ 202 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGST 202 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 3578999999999999999999999999999998754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0031 Score=61.34 Aligned_cols=35 Identities=23% Similarity=0.253 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.+.+|||+|| |.+|...++.+...|+ +|+++++..
T Consensus 167 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~ 202 (348)
T 2d8a_A 167 SGKSVLITGA-GPLGLLGIAVAKASGAYPVIVSEPSD 202 (348)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 5789999999 9999999999999999 999988753
|
| >7mdh_A Protein (malate dehydrogenase); chloroplastic malate dehydrogenase (NADP+), activated by LIG chloroplastic malate dehydrogenase; 2.40A {Sorghum bicolor} SCOP: c.2.1.5 d.162.1.1 PDB: 1civ_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.02 Score=55.62 Aligned_cols=176 Identities=13% Similarity=0.072 Sum_probs=94.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-----eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-----EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIG 159 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-----~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 159 (479)
+..+|.|+||+|.||.+++-.|+..+. .|.+.+.......+ .+.....++.+....-..-+.
T Consensus 31 ~~~KV~ViGAaG~VG~~la~~l~~~~l~~e~~~l~L~d~d~~~~~~------------~~~G~amDL~h~~~p~~~~v~- 97 (375)
T 7mdh_A 31 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQ------------ALEGVAMELEDSLYPLLREVS- 97 (375)
T ss_dssp CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHH------------HHHHHHHHHHTTTCTTEEEEE-
T ss_pred CCCEEEEECCCChHHHHHHHHHHcCCcCCCCceeEEEecCccchhh------------hhHHHHHhHHhhhhhhcCCcE-
Confidence 356899999999999999999998753 26654432211000 011111222222211111111
Q ss_pred ccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeecc---cccc
Q 011707 160 DICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTM---GEYG 235 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~---~v~g 235 (479)
+.+ ...+.++ +.|+||-+||...-+...+ ...++.|..-.+.+.+.+.+. +.+..++.+|-- .+|-
T Consensus 98 -i~~--~~y~~~~--daDvVVitag~prkpG~tR-----~DLl~~N~~I~k~i~~~i~~~a~p~~ivlVvsNPvD~~t~i 167 (375)
T 7mdh_A 98 -IGI--DPYEVFE--DVDWALLIGAKPRGPGMER-----AALLDINGQIFADQGKALNAVASKNVKVLVVGNPCNTNALI 167 (375)
T ss_dssp -EES--CHHHHTT--TCSEEEECCCCCCCTTCCH-----HHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSHHHHHHH
T ss_pred -Eec--CCHHHhC--CCCEEEEcCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCchhHHHHH
Confidence 111 1355666 8999999998643222222 236788999999999999885 666567766641 1110
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCC
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVR 301 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~ 301 (479)
. .... +.+ .+...-+.+-+-.-++-...++..|++..-++-..|.|..
T Consensus 168 a----~k~s-------------g~~-~~rvig~gT~LDsaR~r~~lA~~lgv~~~~V~~v~V~GeH 215 (375)
T 7mdh_A 168 C----LKNA-------------PDI-PAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNH 215 (375)
T ss_dssp H----HHTC-------------TTS-CGGGEEECCHHHHHHHHHHHHHHTTSCGGGEECCEEEBCS
T ss_pred H----HHHc-------------CCC-CccEEEeeehHHHHHHHHHHHHHhCcChhhcccceEEecC
Confidence 0 0000 000 1122333445555566656677778765555543566754
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.013 Score=55.82 Aligned_cols=112 Identities=21% Similarity=0.126 Sum_probs=72.3
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccC--CCceeEEEcccC
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT--GKNIELYIGDIC 162 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~v~~Dl~ 162 (479)
++|.|+|| |.+|..++..|+..+ .+|+++|+....... ...++.+.. ...+.+.. |
T Consensus 1 ~KI~IiGa-G~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g----------------~a~dl~~~~~~~~~~~v~~-~-- 60 (310)
T 2xxj_A 1 MKVGIVGS-GMVGSATAYALALLGVAREVVLVDLDRKLAQA----------------HAEDILHATPFAHPVWVWA-G-- 60 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHH----------------HHHHHHTTGGGSCCCEEEE-C--
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHH----------------HHHHHHHhHhhcCCeEEEE-C--
Confidence 58999998 999999999999987 589999985421111 111111110 12333332 2
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ .++++ +.|+||..++...-+.... ...+..|+.-...+.+.+.+.+.+..++.+|
T Consensus 61 ~----~~a~~--~aD~Vii~ag~~~~~g~~r-----~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 116 (310)
T 2xxj_A 61 S----YGDLE--GARAVVLAAGVAQRPGETR-----LQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT 116 (310)
T ss_dssp C----GGGGT--TEEEEEECCCCCCCTTCCH-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred C----HHHhC--CCCEEEECCCCCCCCCcCH-----HHHHHhhHHHHHHHHHHHHHHCCCcEEEEec
Confidence 2 23466 8999999998643222211 2346778999999999999888776777664
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0051 Score=59.64 Aligned_cols=34 Identities=21% Similarity=0.352 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC-----C-eEEEEec
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG-----Y-EVAIVDS 118 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G-----~-~V~~~dr 118 (479)
++++|.|.||||++|+.|++.|++++ . +|+.+.+
T Consensus 8 ~m~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s 47 (352)
T 2nqt_A 8 NATKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTA 47 (352)
T ss_dssp SCEEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEE
T ss_pred cCCEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEEC
Confidence 45799999999999999999999987 3 6776643
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.52 E-value=0.023 Score=54.29 Aligned_cols=116 Identities=17% Similarity=0.268 Sum_probs=70.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++|.|+|+ |.+|..++..|+..|. +|+++|+........ ..+.... .......+.+.. | +
T Consensus 6 ~~kI~IIGa-G~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~------------~~dl~~~-~~~~~~~~~i~~-~--~ 68 (316)
T 1ldn_A 6 GARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGD------------AMDFNHG-KVFAPKPVDIWH-G--D 68 (316)
T ss_dssp SCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHH------------HHHHHHH-TTSSSSCCEEEE-C--C
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHH------------HhhHHHH-hhhcCCCeEEEc-C--c
Confidence 579999999 9999999999988874 899999864311100 0000111 111111333332 2 2
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
. ++++ +.|+||-+++....+.... ...+..|..-...+.+.+.+......++.+|
T Consensus 69 ~----~al~--~aDvViia~~~~~~~g~~r-----~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~t 123 (316)
T 1ldn_A 69 Y----DDCR--DADLVVICAGANQKPGETR-----LDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (316)
T ss_dssp G----GGTT--TCSEEEECCSCCCCTTTCS-----GGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred H----HHhC--CCCEEEEcCCCCCCCCCCH-----HHHHHcChHHHHHHHHHHHHHCCCCEEEEeC
Confidence 2 3466 8999999998654332211 2245678888888898888877664555543
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0054 Score=61.96 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=32.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
..+.+|||+||+|.||...++.+...|.+|+++++.
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~ 262 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSS 262 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 358899999999999999999999999999988864
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0082 Score=58.94 Aligned_cols=35 Identities=29% Similarity=0.304 Sum_probs=31.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
..+.+|||+||+|.||...++.+...|.+|+++++
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~ 216 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCS 216 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeC
Confidence 35789999999999999999999889999988763
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0043 Score=58.92 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=32.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+++|||+||+|.+|...++.+...|++|+++++..
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~ 160 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP 160 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 578999999999999999999999999999998754
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.026 Score=54.07 Aligned_cols=120 Identities=12% Similarity=0.064 Sum_probs=69.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEE-cccCC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYI-GDICD 163 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~-~Dl~d 163 (479)
.++|.|+|| |.+|..++..|+..|+ +|+++|+......... ..+.+... .. .....+.. .|
T Consensus 4 ~~kI~VIGa-G~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~---------~~l~~~~~---~~-~~~~~i~~t~d--- 66 (322)
T 1t2d_A 4 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKA---------LDTSHTNV---MA-YSNCKVSGSNT--- 66 (322)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHH---------HHHHTHHH---HH-TCCCCEEEECC---
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHH---------HHHHhhhh---hc-CCCcEEEECCC---
Confidence 468999998 9999999999999998 9988887543211100 00011100 01 11222222 23
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccc-cccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMI-DRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~-~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ ++++ +.|+||.+++...-..... ... -......|+.-.+.+.+.+.+...+..++.+|
T Consensus 67 ---~-~al~--~aD~Vi~a~g~p~k~g~~~qe~~-r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t 126 (322)
T 1t2d_A 67 ---Y-DDLA--GADVVIVTAGFTKAPGKSDKEWN-RDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 126 (322)
T ss_dssp ---G-GGGT--TCSEEEECCSCSSCTTCCSTTCC-GGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred ---H-HHhC--CCCEEEEeCCCCCCCCCCccccc-HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 2 3466 8999999998532111100 000 01235568888888888888776665666554
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0053 Score=55.23 Aligned_cols=35 Identities=26% Similarity=0.357 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+++|.|+| +|.+|..+++.|++.|++|++++|..
T Consensus 27 ~~~~I~iiG-~G~~G~~la~~l~~~g~~V~~~~r~~ 61 (215)
T 2vns_A 27 EAPKVGILG-SGDFARSLATRLVGSGFKVVVGSRNP 61 (215)
T ss_dssp --CCEEEEC-CSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred CCCEEEEEc-cCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 467899999 69999999999999999999998754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.017 Score=56.06 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+|||+|+ |.+|...++.+...|++|+++++..
T Consensus 168 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~Vi~~~~~~ 202 (352)
T 1e3j_A 168 LGTTVLVIGA-GPIGLVSVLAAKAYGAFVVCTARSP 202 (352)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEcCCH
Confidence 4789999997 9999999998888899998888643
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.011 Score=58.18 Aligned_cols=70 Identities=21% Similarity=0.201 Sum_probs=53.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
..+++|+|+|+ |.+|+.+++.+.+.|++|+++|........ .. .-.++.+|+.|
T Consensus 10 ~~~~~IlIlG~-G~lg~~la~aa~~lG~~viv~d~~~~~p~~----------------------~~---ad~~~~~~~~d 63 (377)
T 3orq_A 10 KFGATIGIIGG-GQLGKMMAQSAQKMGYKVVVLDPSEDCPCR----------------------YV---AHEFIQAKYDD 63 (377)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCTTCTTG----------------------GG---SSEEEECCTTC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCChhh----------------------hh---CCEEEECCCCC
Confidence 46889999997 999999999999999999999864321100 00 12356789999
Q ss_pred hHHHHHHhhhcCCCEEEE
Q 011707 164 FEFLSESFKSFEPDAVVH 181 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih 181 (479)
.+.+.++.+ .+|+|..
T Consensus 64 ~~~l~~~~~--~~dvi~~ 79 (377)
T 3orq_A 64 EKALNQLGQ--KCDVITY 79 (377)
T ss_dssp HHHHHHHHH--HCSEEEE
T ss_pred HHHHHHHHH--hCCccee
Confidence 999999988 6888743
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.019 Score=59.06 Aligned_cols=35 Identities=26% Similarity=0.400 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSL 119 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~ 119 (479)
+++.+|+|+|+ |++|..+++.|++.|. +++++|..
T Consensus 325 L~~~kVLIVGa-GGLGs~va~~La~aGVG~ItLvD~D 360 (598)
T 3vh1_A 325 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNG 360 (598)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEECCC
Confidence 35689999998 9999999999999996 78888754
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.019 Score=54.48 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=69.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
++++|.|+|| |.+|..++..|+..|. +|+++|.... ..+. ..++......++.. ..|
T Consensus 13 ~~~kV~ViGa-G~vG~~~a~~l~~~g~~~ev~L~Di~~~-~~g~----------------a~dl~~~~~~~i~~-t~d-- 71 (303)
T 2i6t_A 13 TVNKITVVGG-GELGIACTLAISAKGIADRLVLLDLSEG-TKGA----------------TMDLEIFNLPNVEI-SKD-- 71 (303)
T ss_dssp -CCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECCC------C----------------HHHHHHHTCTTEEE-ESC--
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCCEEEEEcCCcc-hHHH----------------HHHHhhhcCCCeEE-eCC--
Confidence 4578999997 9999999999999998 9999998542 1110 01111122234433 233
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ +.++ +.|+||-.+|... +.. +. ...+..|+.-.+.+.+.+.+......|+.+|
T Consensus 72 ----~-~~l~--~aD~Vi~aag~~~--pG~-tR---~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~s 125 (303)
T 2i6t_A 72 ----L-SASA--HSKVVIFTVNSLG--SSQ-SY---LDVVQSNVDMFRALVPALGHYSQHSVLLVAS 125 (303)
T ss_dssp ----G-GGGT--TCSEEEECCCC------C-CH---HHHHHHHHHHHHHHHHHHHHHTTTCEEEECS
T ss_pred ----H-HHHC--CCCEEEEcCCCCC--CCC-CH---HHHHHHHHHHHHHHHHHHHHhCCCeEEEEcC
Confidence 2 3356 8999999998732 111 11 2345678888888998888877665666655
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0062 Score=59.02 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=31.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.+.+|||+|| |.+|...++.+...|+ +|+++++..
T Consensus 164 ~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~~Vi~~~~~~ 199 (343)
T 2dq4_A 164 SGKSVLITGA-GPIGLMAAMVVRASGAGPILVSDPNP 199 (343)
T ss_dssp TTSCEEEECC-SHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 5789999999 9999999999888999 999988753
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0037 Score=58.47 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=33.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..++++|+|+|+ |.+|+.++..|++.|++|++++|..
T Consensus 116 ~~~~~~vlvlGa-Gg~g~a~a~~L~~~G~~v~v~~R~~ 152 (272)
T 1p77_A 116 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTF 152 (272)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHHHCCCEEEEEECCH
Confidence 356899999998 8899999999999999999998864
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.024 Score=58.32 Aligned_cols=36 Identities=25% Similarity=0.384 Sum_probs=30.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
+++.+|+|.|+ |++|..+++.|++.|. +++++|...
T Consensus 324 L~~arVLIVGa-GGLGs~vA~~La~aGVG~ItLvD~D~ 360 (615)
T 4gsl_A 324 IKNTKVLLLGA-GTLGCYVSRALIAWGVRKITFVDNGT 360 (615)
T ss_dssp HHTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCB
T ss_pred HhCCeEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCC
Confidence 35789999998 9999999999999996 788887643
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.032 Score=53.06 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=67.7
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|.|+| +|.+|..++..|++.| ++|+++|+....... +..............+.....| .
T Consensus 2 ~kI~VIG-aG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~-------------~~~~l~~~~~~~~~~~~~~~~d---~ 64 (309)
T 1hyh_A 2 RKIGIIG-LGNVGAAVAHGLIAQGVADDYVFIDANEAKVKA-------------DQIDFQDAMANLEAHGNIVIND---W 64 (309)
T ss_dssp CEEEEEC-CSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH-------------HHHHHHHHGGGSSSCCEEEESC---G
T ss_pred CEEEEEC-CCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHH-------------HHHHHHhhhhhcCCCeEEEeCC---H
Confidence 6899999 5999999999999999 799999986432111 0000000000111223332233 2
Q ss_pred HHHHHHhhhcCCCEEEEcccccCc----ccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSA----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+.++ +.|+||-+++.... +.... ...+..|+.-...+++.+.+...+..++.+|
T Consensus 65 ----~~~~--~aDvViiav~~~~~~~~~~g~~r-----~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~t 122 (309)
T 1hyh_A 65 ----AALA--DADVVISTLGNIKLQQDNPTGDR-----FAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (309)
T ss_dssp ----GGGT--TCSEEEECCSCGGGTC------------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred ----HHhC--CCCEEEEecCCcccCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHHCCCcEEEEEc
Confidence 2455 79999999875331 11111 1245678888888888888766554555543
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0087 Score=59.71 Aligned_cols=71 Identities=20% Similarity=0.109 Sum_probs=53.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+.+++|+|.|+ |.+|+.+++.+.+.|++|+++|....... ... .-..+..|+.
T Consensus 32 ~~~~~~IlIlG~-G~lg~~~~~aa~~lG~~v~v~d~~~~~p~-------------------~~~------ad~~~~~~~~ 85 (419)
T 4e4t_A 32 ILPGAWLGMVGG-GQLGRMFCFAAQSMGYRVAVLDPDPASPA-------------------GAV------ADRHLRAAYD 85 (419)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCTTCHH-------------------HHH------SSEEECCCTT
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEECCCCcCch-------------------hhh------CCEEEECCcC
Confidence 456899999997 89999999999999999999875432110 000 1134568999
Q ss_pred ChHHHHHHhhhcCCCEEEE
Q 011707 163 DFEFLSESFKSFEPDAVVH 181 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih 181 (479)
|.+.+.++.+ ++|+|+.
T Consensus 86 d~~~l~~~a~--~~D~V~~ 102 (419)
T 4e4t_A 86 DEAALAELAG--LCEAVST 102 (419)
T ss_dssp CHHHHHHHHH--HCSEEEE
T ss_pred CHHHHHHHHh--cCCEEEE
Confidence 9999999886 7999883
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0049 Score=60.33 Aligned_cols=36 Identities=22% Similarity=0.354 Sum_probs=32.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
+++++|||+|| |.||..+++.+...|++|+++++..
T Consensus 179 ~~g~~VlV~Ga-G~vG~~~~q~a~~~Ga~Vi~~~~~~ 214 (366)
T 2cdc_A 179 LNCRKVLVVGT-GPIGVLFTLLFRTYGLEVWMANRRE 214 (366)
T ss_dssp STTCEEEEESC-HHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 34899999999 9999999999988999999998754
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.03 Score=53.30 Aligned_cols=116 Identities=15% Similarity=0.102 Sum_probs=68.3
Q ss_pred cEEEEEcCCchhhHHHHHHHHhC--CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNK--GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~--G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
|+|.|+|+ |.+|..++..|+.. |++|+++|+.......... ++.+.. ... .....+... +|.
T Consensus 1 mkI~VIGa-G~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~---------~l~~~~---~~~-~~~~~i~~t--~d~ 64 (310)
T 1guz_A 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGKAL---------DMYESG---PVG-LFDTKVTGS--NDY 64 (310)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHH---------HHHTTH---HHH-TCCCEEEEE--SCG
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHH---------hHHhhh---hcc-cCCcEEEEC--CCH
Confidence 47999998 99999999999985 7999999986432111000 000000 000 011111110 222
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ + ++ +.|+||-+++....+... ....+..|+.-...+.+.+.+.+.+..++.+|
T Consensus 65 ~---~-l~--~aDvViiav~~p~~~g~~-----r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t 118 (310)
T 1guz_A 65 A---D-TA--NSDIVIITAGLPRKPGMT-----REDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (310)
T ss_dssp G---G-GT--TCSEEEECCSCCCCTTCC-----HHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred H---H-HC--CCCEEEEeCCCCCCCCCC-----HHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 2 2 55 799999998743211111 12345678888889998888877665666664
|
| >2hjs_A USG-1 protein homolog; aspartate-semialdehyde dehydrogenase, probable hydrolase, PS aeruginosa, structurual genomics; 2.20A {Pseudomonas aeruginosa} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0086 Score=57.85 Aligned_cols=31 Identities=19% Similarity=0.385 Sum_probs=25.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC---eEEEE
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY---EVAIV 116 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~---~V~~~ 116 (479)
+++|+|.||||++|+.+++.|+++++ +++.+
T Consensus 6 ~~kV~IiGAtG~iG~~llr~L~~~~~~~~elv~i 39 (340)
T 2hjs_A 6 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLL 39 (340)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEE
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEE
Confidence 36899999999999999999997765 44544
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0058 Score=59.24 Aligned_cols=35 Identities=14% Similarity=-0.005 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhC--CCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNK--GYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~--G~~V~~~dr~~ 120 (479)
.+.+|||+|| |.+|...++.+... |.+|+++++..
T Consensus 170 ~g~~VlV~Ga-G~vG~~aiqlak~~~~Ga~Vi~~~~~~ 206 (344)
T 2h6e_A 170 AEPVVIVNGI-GGLAVYTIQILKALMKNITIVGISRSK 206 (344)
T ss_dssp SSCEEEEECC-SHHHHHHHHHHHHHCTTCEEEEECSCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHhcCCCEEEEEeCCH
Confidence 5789999999 99999999988888 99999988643
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.041 Score=52.78 Aligned_cols=117 Identities=18% Similarity=0.156 Sum_probs=69.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.++|.|+|| |.+|..++..|+..|+ +|+++|+......... ..+.+..... ....++... .|
T Consensus 14 ~~kI~ViGa-G~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~---------~~l~~~~~~~--~~~~~i~~t-~d---- 76 (328)
T 2hjr_A 14 RKKISIIGA-GQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKA---------LDLNHCMALI--GSPAKIFGE-NN---- 76 (328)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHH---------HHHHHHHHHH--TCCCCEEEE-SC----
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHH---------HHHHhHhhcc--CCCCEEEEC-CC----
Confidence 368999998 9999999999999998 9999988643211100 0011111100 011122211 23
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ ++++ +.|+||-+++...-+ .. +. ......|+.-.+.+.+.+.+...+..++.+|
T Consensus 77 --~-~al~--~aD~VI~avg~p~k~-g~-tr---~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t 131 (328)
T 2hjr_A 77 --Y-EYLQ--NSDVVIITAGVPRKP-NM-TR---SDLLTVNAKIVGSVAENVGKYCPNAFVICIT 131 (328)
T ss_dssp --G-GGGT--TCSEEEECCSCCCCT-TC-CS---GGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred --H-HHHC--CCCEEEEcCCCCCCC-CC-ch---hhHHhhhHHHHHHHHHHHHHHCCCeEEEEec
Confidence 2 3456 899999999753211 11 11 1234568888888888888776664555554
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.009 Score=57.85 Aligned_cols=33 Identities=24% Similarity=0.333 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIV 116 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~ 116 (479)
..+.+|||+||+|.||...++.+...|++|+++
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~ 181 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT 181 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence 358899999999999999999999999999987
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.08 E-value=0.031 Score=46.68 Aligned_cols=32 Identities=22% Similarity=0.310 Sum_probs=28.4
Q ss_pred CcEEEEEcCC---chhhHHHHHHHHhCCCeEEEEe
Q 011707 86 AKRVMIIGGD---GYCGWATALHLSNKGYEVAIVD 117 (479)
Q Consensus 86 ~~~vLVtGat---G~iG~~l~~~Ll~~G~~V~~~d 117 (479)
.++|.|+|++ |.+|..+++.|.+.|++|+.++
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vn 56 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVN 56 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEEC
Confidence 5789999998 8999999999999999976654
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0066 Score=56.80 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=32.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIR 121 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~ 121 (479)
.++++++|+|+ |.+|+.++..|++.|+ +|++++|...
T Consensus 115 l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~~ 152 (277)
T 3don_A 115 IEDAYILILGA-GGASKGIANELYKIVRPTLTVANRTMS 152 (277)
T ss_dssp GGGCCEEEECC-SHHHHHHHHHHHTTCCSCCEEECSCGG
T ss_pred cCCCEEEEECC-cHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence 46889999997 9999999999999998 8999887543
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0095 Score=59.52 Aligned_cols=95 Identities=15% Similarity=0.243 Sum_probs=60.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCC-C---eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKG-Y---EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G-~---~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.++|+|.| .|.||+.++..|++++ + +|+++|...... + + .+. .++.+...++
T Consensus 13 ~~rVlIIG-aGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~-~-------------~---~~~------~g~~~~~~~V 68 (480)
T 2ph5_A 13 KNRFVILG-FGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKV-D-------------V---AQQ------YGVSFKLQQI 68 (480)
T ss_dssp CSCEEEEC-CSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSC-C-------------H---HHH------HTCEEEECCC
T ss_pred CCCEEEEC-cCHHHHHHHHHHHhCCCCceeEEEEeccchhhh-h-------------H---Hhh------cCCceeEEec
Confidence 35799999 5999999999999974 4 688887533210 0 0 001 1345555565
Q ss_pred CC--h-HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecc
Q 011707 162 CD--F-EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d--~-~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~ 231 (479)
++ . +.+.+++++ .|+|||.+-. . ....++++|.+.|+. |++|+
T Consensus 69 dadnv~~~l~aLl~~--~DvVIN~s~~----~-----------------~~l~Im~acleaGv~----YlDTa 114 (480)
T 2ph5_A 69 TPQNYLEVIGSTLEE--NDFLIDVSIG----I-----------------SSLALIILCNQKGAL----YINAA 114 (480)
T ss_dssp CTTTHHHHTGGGCCT--TCEEEECCSS----S-----------------CHHHHHHHHHHHTCE----EEESS
T ss_pred cchhHHHHHHHHhcC--CCEEEECCcc----c-----------------cCHHHHHHHHHcCCC----EEECC
Confidence 44 3 335667774 4999986521 0 123689999999854 66665
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.02 E-value=0.019 Score=53.28 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=33.5
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
..+.|++++|+|+++.+|+.++..|++.|..|+++++
T Consensus 156 i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~ 192 (285)
T 3p2o_A 156 IDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHI 192 (285)
T ss_dssp CCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 3568999999999999999999999999999998764
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.028 Score=55.38 Aligned_cols=70 Identities=23% Similarity=0.262 Sum_probs=52.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+.+|+|+|+|+ |.+|..+++.+.+.|++|+++|........ . ..-..+..|+.
T Consensus 11 ~~~~k~IlIlG~-G~~g~~la~aa~~~G~~vi~~d~~~~~~~~----------------------~---~ad~~~~~~~~ 64 (389)
T 3q2o_A 11 ILPGKTIGIIGG-GQLGRMMALAAKEMGYKIAVLDPTKNSPCA----------------------Q---VADIEIVASYD 64 (389)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTTT----------------------T---TCSEEEECCTT
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEeCCCCCchH----------------------H---hCCceEecCcC
Confidence 346899999997 889999999999999999999864321100 0 01134568889
Q ss_pred ChHHHHHHhhhcCCCEEE
Q 011707 163 DFEFLSESFKSFEPDAVV 180 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vi 180 (479)
|.+.+.++++ .+|+|.
T Consensus 65 d~~~l~~~~~--~~dvI~ 80 (389)
T 3q2o_A 65 DLKAIQHLAE--ISDVVT 80 (389)
T ss_dssp CHHHHHHHHH--TCSEEE
T ss_pred CHHHHHHHHH--hCCEee
Confidence 9999999988 689874
|
| >1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.056 Score=53.82 Aligned_cols=126 Identities=15% Similarity=0.166 Sum_probs=71.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC----CCCCCccchhhhhhhhhcccC-CCceeEEE
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG----LDSLTPIASIHDRLRCWKSLT-GKNIELYI 158 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~ 158 (479)
+..+|+|.|+ |++|..+++.|++.|. +++++|...=...+.... ...+. ........+.+..+. .-.++.+.
T Consensus 39 ~~~~VlvvG~-GGlGs~va~~La~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG-~~Ka~~a~~~l~~lnp~v~v~~~~ 116 (434)
T 1tt5_B 39 DTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIG-RPKAEVAAEFLNDRVPNCNVVPHF 116 (434)
T ss_dssp HTCCEEEECS-STHHHHHHHHHHHTTCCCEEEEECCBCCGGGTTTCTTCCGGGTT-SBHHHHHHHHHHHHSTTCCCEEEE
T ss_pred cCCEEEEECc-CHHHHHHHHHHHHcCCCEEEEEcCCEechhccCCCcCCChhHcC-cHHHHHHHHHHHhhCCCCEEEEEe
Confidence 4678999998 9999999999999996 788887543111111000 00000 011112222333322 23567777
Q ss_pred cccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc----------CCcceEEEe
Q 011707 159 GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----------RQECHLVKL 228 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----------g~~~~~V~~ 228 (479)
.++.+.. .+.++ ++|+||.+.. |...-..+-++|.+. ..++.+|+.
T Consensus 117 ~~i~~~~--~~~~~--~~DlVi~~~D--------------------n~~~R~~in~~c~~~~~~~~g~~~~~~~iPli~~ 172 (434)
T 1tt5_B 117 NKIQDFN--DTFYR--QFHIIVCGLD--------------------SIIARRWINGMLISLLNYEDGVLDPSSIVPLIDG 172 (434)
T ss_dssp SCGGGBC--HHHHT--TCSEEEECCS--------------------CHHHHHHHHHHHHHTCCBSSSCBCGGGCCCEEEE
T ss_pred cccchhh--HHHhc--CCCEEEECCC--------------------CHHHHHHHHHHHHHhhhccccccccccCCcEEEe
Confidence 7775533 35666 7899998742 333334455566553 012468888
Q ss_pred eccccccC
Q 011707 229 GTMGEYGT 236 (479)
Q Consensus 229 SS~~v~g~ 236 (479)
++.+.+|.
T Consensus 173 ~~~g~~G~ 180 (434)
T 1tt5_B 173 GTEGFKGN 180 (434)
T ss_dssp EEETTEEE
T ss_pred ccccceeE
Confidence 87665553
|
| >2r00_A Aspartate-semialdehyde dehydrogenase; conformational change, half-OF-sites-reactivity, protein evolution, sequence homology; HET: HTI; 2.03A {Vibrio cholerae} PDB: 2qz9_A* 2r00_C* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.034 Score=53.55 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=26.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCC---CeEEEEe
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKG---YEVAIVD 117 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G---~~V~~~d 117 (479)
+++|.|.||||++|+.+++.|++++ .+++.+.
T Consensus 3 ~~kV~I~GAtG~iG~~llr~L~~~~~p~~elv~i~ 37 (336)
T 2r00_A 3 QFNVAIFGATGAVGETMLEVLQEREFPVDELFLLA 37 (336)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred ccEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 5789999999999999999999984 3566554
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.031 Score=53.11 Aligned_cols=112 Identities=17% Similarity=0.202 Sum_probs=70.9
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhccc---CCCceeEEE-cccC
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL---TGKNIELYI-GDIC 162 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~v~-~Dl~ 162 (479)
+|.|+|| |.+|..++..|+..|. +|+++|+....... ...++.+. ......+.. .|
T Consensus 1 KI~IiGa-G~vG~~~a~~l~~~~l~el~L~Di~~~~~~g----------------~~~dl~~~~~~~~~~~~i~~t~d-- 61 (308)
T 2d4a_B 1 MITILGA-GKVGMATAVMLMMRGYDDLLLIARTPGKPQG----------------EALDLAHAAAELGVDIRISGSNS-- 61 (308)
T ss_dssp CEEEECC-SHHHHHHHHHHHHHTCSCEEEECSSTTHHHH----------------HHHHHHHHHHHHTCCCCEEEESC--
T ss_pred CEEEECc-CHHHHHHHHHHHhCCCCEEEEEcCChhhHHH----------------HHHHHHHhhhhcCCCeEEEECCC--
Confidence 4889998 9999999999998887 69999975431111 01111110 112223332 33
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
. ++++ +.|+||-.++...-+.... ...+..|+.-.+.+.+.+.+......++.+|-
T Consensus 62 -~----~a~~--~aD~Vi~~ag~~~k~G~~r-----~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN 117 (308)
T 2d4a_B 62 -Y----EDMR--GSDIVLVTAGIGRKPGMTR-----EQLLEANANTMADLAEKIKAYAKDAIVVITTN 117 (308)
T ss_dssp -G----GGGT--TCSEEEECCSCCCCSSCCT-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred -H----HHhC--CCCEEEEeCCCCCCCCCcH-----HHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 2 2466 8999999998643222211 23456788889999999988776656776653
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.015 Score=56.23 Aligned_cols=33 Identities=33% Similarity=0.429 Sum_probs=28.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEec
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDS 118 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr 118 (479)
+++|.|.||||++|+.+++.|+++.. +++.+..
T Consensus 4 ~~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s 37 (345)
T 2ozp_A 4 KKTLSIVGASGYAGGEFLRLALSHPYLEVKQVTS 37 (345)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBC
T ss_pred CCEEEEECCCCHHHHHHHHHHHcCCCcEEEEEEC
Confidence 47899999999999999999998754 7776654
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=95.97 E-value=0.047 Score=52.11 Aligned_cols=118 Identities=13% Similarity=0.093 Sum_probs=68.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.++|.|+|+ |.+|..++..|+..|+ +|+++|+........ ..++..... .. ....++.. ..|
T Consensus 4 ~~kI~VIGa-G~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~---------~~~l~~~~~-~~-~~~~~i~~-t~d---- 66 (317)
T 2ewd_A 4 RRKIAVIGS-GQIGGNIAYIVGKDNLADVVLFDIAEGIPQGK---------ALDITHSMV-MF-GSTSKVIG-TDD---- 66 (317)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHH---------HHHHHHHHH-HH-TCCCCEEE-ESC----
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCchHHHHH---------HHHHHhhhh-hc-CCCcEEEE-CCC----
Confidence 468999998 9999999999999998 999998864321110 000000000 00 00112221 122
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
+ ++++ +.|+||-+++....+.... ...+.-|....+.+++...+...+..++.+|.
T Consensus 67 --~-~a~~--~aDiVi~avg~p~~~g~~r-----~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sN 122 (317)
T 2ewd_A 67 --Y-ADIS--GSDVVIITASIPGRPKDDR-----SELLFGNARILDSVAEGVKKYCPNAFVICITN 122 (317)
T ss_dssp --G-GGGT--TCSEEEECCCCSSCCSSCG-----GGGHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred --H-HHhC--CCCEEEEeCCCCCCCCCcH-----HHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 2 2455 7999999998643222211 12345577777888888877765545665554
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.92 E-value=0.047 Score=52.17 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=68.0
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
|+|.|+|+ |.+|..++..|+..|+ +|+++|+....... +...+....... ....+.. +|.
T Consensus 1 mkI~VIGa-G~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~-------------~~~~l~~~~~~~-~~~~i~~---~d~ 62 (319)
T 1a5z_A 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEG-------------DALDLIHGTPFT-RRANIYA---GDY 62 (319)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHH-------------HHHHHHHHGGGS-CCCEEEE---CCG
T ss_pred CEEEEECC-CHHHHHHHHHHHhCCCCCeEEEEeCChHHHHH-------------HHHHHHhhhhhc-CCcEEEe---CCH
Confidence 57999998 9999999999999999 99999986431111 000000000010 1122221 232
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ .++ +.|+||-+++....+.... ......|+.....+++.+.+......+|.+|
T Consensus 63 ~----~~~--~aDvViiav~~~~~~g~~r-----~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~t 116 (319)
T 1a5z_A 63 A----DLK--GSDVVIVAAGVPQKPGETR-----LQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (319)
T ss_dssp G----GGT--TCSEEEECCCCCCCSSCCH-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred H----HhC--CCCEEEEccCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 2 355 7999999987533211111 1235668888888888888776554565554
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.03 Score=46.38 Aligned_cols=36 Identities=22% Similarity=0.410 Sum_probs=29.6
Q ss_pred CCCCcEEEEEcCC---chhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGD---GYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGat---G~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.++.++|.|+|++ |-+|..+++.|++.|++|+.++.
T Consensus 11 l~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp 49 (138)
T 1y81_A 11 SKEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNP 49 (138)
T ss_dssp ---CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECT
T ss_pred ccCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCC
Confidence 4567899999997 89999999999999999877654
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=95.91 E-value=0.12 Score=48.41 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEE
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVA 114 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~ 114 (479)
+.++|+|.|++|-.|+.+++.|.+.|++++
T Consensus 6 ~~~~VaVvGasG~~G~~~~~~l~~~g~~~v 35 (288)
T 1oi7_A 6 RETRVLVQGITGREGQFHTKQMLTYGTKIV 35 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHcCCeEE
Confidence 457899999999999999999999999855
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.014 Score=58.53 Aligned_cols=34 Identities=41% Similarity=0.432 Sum_probs=30.4
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
|+|.|+| +|++|..++..|++.|++|+++|+...
T Consensus 1 mkI~VIG-~G~vG~~~A~~la~~G~~V~~~d~~~~ 34 (436)
T 1mv8_A 1 MRISIFG-LGYVGAVCAGCLSARGHEVIGVDVSST 34 (436)
T ss_dssp CEEEEEC-CSTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEEC-CCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 4799998 599999999999999999999998654
|
| >3pwk_A Aspartate-semialdehyde dehydrogenase; NADP binding, oxidoreductase-oxidoreductase I complex; HET: 25A L14; 1.50A {Streptococcus pneumoniae} PDB: 2gyy_A* 2gz2_A* 2gz3_A* 2gz1_A* 3pws_A* 3pyl_A 3pyx_A* 3pzb_A* 3q11_A* 3q1l_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0092 Score=58.01 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=24.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCe
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYE 112 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~ 112 (479)
+++|.|.||||++|..|++.|.++++.
T Consensus 2 ~~kVaIvGATG~vG~eLlrlL~~~~~p 28 (366)
T 3pwk_A 2 GYTVAVVGATGAVGAQMIKMLEESTLP 28 (366)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCCC
T ss_pred CcEEEEECCCChHHHHHHHHHhcCCCC
Confidence 468999999999999999999987663
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.033 Score=53.31 Aligned_cols=36 Identities=22% Similarity=0.430 Sum_probs=31.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
.+|+|.|+|. |.+|..+++.|++.|++|++.|+...
T Consensus 30 ~~~~I~iIG~-G~mG~~~a~~l~~~G~~V~~~dr~~~ 65 (320)
T 4dll_A 30 YARKITFLGT-GSMGLPMARRLCEAGYALQVWNRTPA 65 (320)
T ss_dssp CCSEEEEECC-TTTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCCEEEEECc-cHHHHHHHHHHHhCCCeEEEEcCCHH
Confidence 4679999976 99999999999999999999988643
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=95.82 E-value=0.035 Score=54.27 Aligned_cols=34 Identities=26% Similarity=0.224 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEe
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD 117 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~d 117 (479)
..+.+|||+||+|.+|...++.+...|++|+++.
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~ 196 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC 196 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 3578999999999999999999999999998775
|
| >1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.036 Score=54.51 Aligned_cols=72 Identities=24% Similarity=0.221 Sum_probs=53.7
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+|+|||+|+ |.+|..+++.+.+.|++|++++........ . . .-..+..|..|.
T Consensus 10 ~~~~ili~g~-g~~~~~~~~a~~~~G~~v~~~~~~~~~~~~-------------------~---~---~d~~~~~~~~d~ 63 (391)
T 1kjq_A 10 AATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAM-------------------H---V---AHRSHVINMLDG 63 (391)
T ss_dssp TCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGG-------------------G---G---SSEEEECCTTCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCEEEEEECCCCCchh-------------------h---h---ccceEECCCCCH
Confidence 4689999987 789999999999999999999864321000 0 0 113456788888
Q ss_pred HHHHHHhhhcCCCEEEEc
Q 011707 165 EFLSESFKSFEPDAVVHF 182 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~ 182 (479)
+.+.++++..++|+|+..
T Consensus 64 ~~l~~~~~~~~~d~v~~~ 81 (391)
T 1kjq_A 64 DALRRVVELEKPHYIVPE 81 (391)
T ss_dssp HHHHHHHHHHCCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 888888876689999864
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.015 Score=54.18 Aligned_cols=37 Identities=24% Similarity=0.443 Sum_probs=32.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
..++++++|+|+ |.+|+.++..|++.|. +|++++|..
T Consensus 117 ~l~~k~~lvlGa-Gg~~~aia~~L~~~G~~~v~i~~R~~ 154 (272)
T 3pwz_A 117 PLRNRRVLLLGA-GGAVRGALLPFLQAGPSELVIANRDM 154 (272)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHTCCSEEEEECSCH
T ss_pred CccCCEEEEECc-cHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 457899999998 8999999999999996 899988754
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.02 Score=55.74 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=28.5
Q ss_pred CcEEEEEcCCchhhHHH-HHHH-HhCCCe-EEEEeccc
Q 011707 86 AKRVMIIGGDGYCGWAT-ALHL-SNKGYE-VAIVDSLI 120 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l-~~~L-l~~G~~-V~~~dr~~ 120 (479)
+.+|||+|| |.+|... ++.+ ...|.+ |+++++..
T Consensus 173 ~~~VlV~Ga-G~vG~~a~iqla~k~~Ga~~Vi~~~~~~ 209 (357)
T 2b5w_A 173 PSSAFVLGN-GSLGLLTLAMLKVDDKGYENLYCLGRRD 209 (357)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHCTTCCCEEEEEECCC
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHcCCcEEEEEeCCc
Confidence 389999999 9999999 7777 667987 99988743
|
| >1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbh_A 3dbl_A 3dbr_A 1r4m_A 1r4n_A* 2nvu_A* 1yov_A 3gzn_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.024 Score=58.11 Aligned_cols=126 Identities=14% Similarity=0.040 Sum_probs=71.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccccccccc--cc--CCCCCCccchhhhhhhhhcccCC-CceeEEE
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDH--QL--GLDSLTPIASIHDRLRCWKSLTG-KNIELYI 158 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~ 158 (479)
+..+|||.|+ |++|..+++.|++.|. +++++|...=...+. +. ....+. ........+.+.++.. -.+..+.
T Consensus 31 ~~~~VlvvG~-GGlGseiak~La~aGVg~itlvD~D~Ve~sNL~RQ~l~~~~dvG-~~Ka~~a~~~l~~lNp~v~v~~~~ 108 (531)
T 1tt5_A 31 ESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIG-KNRAEAAMEFLQELNSDVSGSFVE 108 (531)
T ss_dssp HHCEEEEECC-SHHHHHHHHHHHTTTCSEEEEECCCBBCHHHHHHCTTCCGGGBT-SBHHHHHHHHHHTTCTTSBCCEES
T ss_pred hcCeEEEECc-CHHHHHHHHHHHHcCCCeEEEEeCCEechhhcccCccCChhhcC-cHHHHHHHHHHHHhCCCCeEEEeC
Confidence 4569999997 9999999999999996 788887542111110 00 000011 0111112223333321 2445555
Q ss_pred cccCCh-HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 159 GDICDF-EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 159 ~Dl~d~-~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
.++++. +...+.+. ++|+||.+.. |...-..+.++|.+.+ +.+|..++.+.+|.
T Consensus 109 ~~~~~~~~~~~~~~~--~~DvVi~~~d--------------------~~~~r~~ln~~c~~~~--iplI~~~~~G~~G~ 163 (531)
T 1tt5_A 109 ESPENLLDNDPSFFC--RFTVVVATQL--------------------PESTSLRLADVLWNSQ--IPLLICRTYGLVGY 163 (531)
T ss_dssp SCHHHHHHSCGGGGG--GCSEEEEESC--------------------CHHHHHHHHHHHHHTT--CCEEEEEEETTEEE
T ss_pred CCcchhhhhhHHHhc--CCCEEEEeCC--------------------CHHHHHHHHHHHHHcC--CCEEEEEecCCeEE
Confidence 544321 11223455 7899997742 4444456778888887 46888888777665
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.021 Score=56.89 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
++.+|.|+|. ||+|.-++..|++.|++|+++|....
T Consensus 20 ~m~~IaViGl-GYVGLp~A~~~A~~G~~V~g~Did~~ 55 (444)
T 3vtf_A 20 HMASLSVLGL-GYVGVVHAVGFALLGHRVVGYDVNPS 55 (444)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHHHTCEEEEECSCHH
T ss_pred CCCEEEEEcc-CHHHHHHHHHHHhCCCcEEEEECCHH
Confidence 4679999975 99999999999999999999998654
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.75 E-value=0.038 Score=52.41 Aligned_cols=82 Identities=17% Similarity=0.073 Sum_probs=54.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+.+++++|+|++.-+|..+++.|+..|.+|++++|........ ...+ ............+
T Consensus 174 ~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~r----------------a~~l---a~~~~~~t~~~~t 234 (320)
T 1edz_A 174 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTR----------------GESL---KLNKHHVEDLGEY 234 (320)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEES----------------CCCS---SCCCCEEEEEEEC
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhH----------------HHHH---hhhcccccccccc
Confidence 56799999999988899999999999999999998753321111 0001 0000111111113
Q ss_pred ChHHHHHHhhhcCCCEEEEcccc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQ 185 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~ 185 (479)
+++.+.+.+. ..|+||...+.
T Consensus 235 ~~~~L~e~l~--~ADIVIsAtg~ 255 (320)
T 1edz_A 235 SEDLLKKCSL--DSDVVITGVPS 255 (320)
T ss_dssp CHHHHHHHHH--HCSEEEECCCC
T ss_pred cHhHHHHHhc--cCCEEEECCCC
Confidence 4577888888 78999998875
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.03 Score=51.97 Aligned_cols=37 Identities=19% Similarity=0.285 Sum_probs=33.4
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
..+.|++++|.|++|.+|+.++..|++.|.+|+++.+
T Consensus 157 i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs 193 (286)
T 4a5o_A 157 ADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHR 193 (286)
T ss_dssp CCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeC
Confidence 3568999999999999999999999999999998753
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.042 Score=53.33 Aligned_cols=35 Identities=26% Similarity=0.363 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.+.+|||+|+ |.+|...++.+...|. +|+++++..
T Consensus 171 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~ 206 (356)
T 1pl8_A 171 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSA 206 (356)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4789999996 9999999998888898 899988653
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.031 Score=54.68 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=30.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
..+.+|||+|+ |.+|...++.+...|. +|+++++..
T Consensus 191 ~~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~ 227 (374)
T 1cdo_A 191 EPGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNP 227 (374)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEEcCCH
Confidence 35789999996 9999999998888998 799887643
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.024 Score=47.07 Aligned_cols=32 Identities=25% Similarity=0.379 Sum_probs=28.3
Q ss_pred CcEEEEEcCC---chhhHHHHHHHHhCCCeEEEEe
Q 011707 86 AKRVMIIGGD---GYCGWATALHLSNKGYEVAIVD 117 (479)
Q Consensus 86 ~~~vLVtGat---G~iG~~l~~~Ll~~G~~V~~~d 117 (479)
.++|.|.|++ |-+|..+++.|.+.|++|+.++
T Consensus 13 p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vn 47 (140)
T 1iuk_A 13 AKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVN 47 (140)
T ss_dssp CCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeC
Confidence 5789999998 8899999999999999977654
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.047 Score=49.94 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=48.1
Q ss_pred cEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
++|.|+|++|-+|+.+++.+.+. |++|+++...... +.+... .... +..|.+.++
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~d----------------l~~~~~-------~~~D-vvIDfT~p~ 56 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDP----------------LSLLTD-------GNTE-VVIDFTHPD 56 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCC----------------THHHHH-------TTCC-EEEECSCTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCC----------------HHHHhc-------cCCc-EEEEccChH
Confidence 47999999999999999999876 8998865432110 001010 1122 567888887
Q ss_pred HHHHHhh---hcCCCEEEEccc
Q 011707 166 FLSESFK---SFEPDAVVHFGE 184 (479)
Q Consensus 166 ~~~~~~~---~~~~D~Vih~A~ 184 (479)
...+.+. +.+.++|+-..|
T Consensus 57 a~~~~~~~a~~~g~~~VigTTG 78 (245)
T 1p9l_A 57 VVMGNLEFLIDNGIHAVVGTTG 78 (245)
T ss_dssp THHHHHHHHHHTTCEEEECCCC
T ss_pred HHHHHHHHHHHcCCCEEEcCCC
Confidence 6665442 347888885554
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.027 Score=55.32 Aligned_cols=35 Identities=23% Similarity=0.260 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~ 120 (479)
.+.+|||+| +|.+|...++.+...| .+|+++++..
T Consensus 195 ~g~~VlV~G-aG~vG~~aiqlak~~Ga~~Vi~~~~~~ 230 (380)
T 1vj0_A 195 AGKTVVIQG-AGPLGLFGVVIARSLGAENVIVIAGSP 230 (380)
T ss_dssp BTCEEEEEC-CSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCceEEEEcCCH
Confidence 478999999 8999999999888899 6999998653
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.67 E-value=0.037 Score=54.11 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.+.+|||+|+ |.+|...++.+...|. +|+++++..
T Consensus 191 ~g~~VlV~Ga-G~vG~~a~qla~~~Ga~~Vi~~~~~~ 226 (374)
T 2jhf_A 191 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINK 226 (374)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 5789999995 9999999998888898 799887653
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.034 Score=51.66 Aligned_cols=36 Identities=14% Similarity=0.203 Sum_probs=32.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.+.|++++|+|+++.+|+.++..|++.|.+|+++.+
T Consensus 158 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs 193 (285)
T 3l07_A 158 KTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHR 193 (285)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeC
Confidence 568999999999999999999999999999988753
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.033 Score=52.14 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=33.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.+.|++++|+|++|.+|+.++..|++.|++|+++++
T Consensus 162 ~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~ 197 (300)
T 4a26_A 162 EMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHS 197 (300)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 568999999999999999999999999999998865
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=95.65 E-value=0.02 Score=56.83 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=32.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
..+++|+|+|+ |.+|..+++.|...|. +|++++|..
T Consensus 165 l~g~~VlIiGa-G~iG~~~a~~l~~~G~~~V~v~~r~~ 201 (404)
T 1gpj_A 165 LHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTY 201 (404)
T ss_dssp CTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred ccCCEEEEECh-HHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence 46899999998 9999999999999998 899988754
|
| >3ax6_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, riken structural genomics/proteomics in RSGI, ATP grAsp, ATP binding; HET: ADP; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.036 Score=54.31 Aligned_cols=69 Identities=25% Similarity=0.284 Sum_probs=51.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
||+|+|+|+ |.+|..+++.|.+.|++|++++....... .. . .-..+..|+.|.+
T Consensus 1 M~~Ililg~-g~~g~~~~~a~~~~G~~v~~~~~~~~~~~-------------------~~---~---~~~~~~~~~~d~~ 54 (380)
T 3ax6_A 1 MKKIGIIGG-GQLGKMMTLEAKKMGFYVIVLDPTPRSPA-------------------GQ---V---ADEQIVAGFFDSE 54 (380)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSTTCTT-------------------GG---G---SSEEEECCTTCHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCCCCch-------------------hh---h---CceEEECCCCCHH
Confidence 478999997 89999999999999999999886432100 00 0 1124567889999
Q ss_pred HHHHHhhhcCCCEEEEc
Q 011707 166 FLSESFKSFEPDAVVHF 182 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~ 182 (479)
.+.++.+ ++|.|+..
T Consensus 55 ~l~~~~~--~~d~v~~~ 69 (380)
T 3ax6_A 55 RIEDLVK--GSDVTTYD 69 (380)
T ss_dssp HHHHHHH--TCSEEEES
T ss_pred HHHHHHh--cCCEEEec
Confidence 8988885 89998853
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.012 Score=55.30 Aligned_cols=37 Identities=14% Similarity=0.243 Sum_probs=32.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.+++++++|+|+ |.+|+.++..|++.|. +|++++|..
T Consensus 123 ~l~~k~vlvlGa-Gg~g~aia~~L~~~G~~~v~v~~R~~ 160 (281)
T 3o8q_A 123 LLKGATILLIGA-GGAARGVLKPLLDQQPASITVTNRTF 160 (281)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTCCSEEEEEESSH
T ss_pred CccCCEEEEECc-hHHHHHHHHHHHhcCCCeEEEEECCH
Confidence 457899999998 8999999999999996 899998854
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.14 Score=48.06 Aligned_cols=31 Identities=19% Similarity=0.110 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEE
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAI 115 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~ 115 (479)
+.++|.|.|+||.+|+.+++.|.+.|++++.
T Consensus 6 ~~~rVaViG~sG~~G~~~~~~l~~~g~~~V~ 36 (288)
T 2nu8_A 6 KNTKVICQGFTGSQGTFHSEQAIAYGTKMVG 36 (288)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCEEEE
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCeEEE
Confidence 4578999999999999999999998998653
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.014 Score=56.89 Aligned_cols=34 Identities=26% Similarity=0.538 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEec
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDS 118 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr 118 (479)
++++|.|.||+|++|+.+++.|.++. .+++.+..
T Consensus 15 ~~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~ 49 (359)
T 1xyg_A 15 KDIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTA 49 (359)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBC
T ss_pred cCcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeC
Confidence 34689999999999999999999885 47777654
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.037 Score=54.21 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=30.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.+.+|||+|+ |.+|...++.+...|. +|+++++..
T Consensus 195 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~ 230 (376)
T 1e3i_A 195 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDING 230 (376)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 5789999996 9999999998888898 799887643
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.056 Score=51.97 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=33.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+|+|.|+|. |-||+.+++.|...|++|++.++..
T Consensus 168 ~l~gktiGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~ 204 (340)
T 4dgs_A 168 SPKGKRIGVLGL-GQIGRALASRAEAFGMSVRYWNRST 204 (340)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred cccCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCc
Confidence 567999999987 9999999999999999999988753
|
| >1t4b_A Aspartate-semialdehyde dehydrogenase; asadh, HOSR, lysine biosynthesis, NADP+ oxidoreductase (phosphorylating), domain movement; 1.60A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1t4d_A 1brm_A 1gl3_A* 1nwc_A 1ta4_A 1tb4_A 1ps8_A 1pr3_A 1oza_A 1pqu_A* 1pqp_A 1nwh_A* 1nx6_A* 1pu2_A* 1q2x_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.025 Score=55.17 Aligned_cols=26 Identities=19% Similarity=0.333 Sum_probs=21.2
Q ss_pred CcEEEEEcCCchhhHHHHHH-HHhCCC
Q 011707 86 AKRVMIIGGDGYCGWATALH-LSNKGY 111 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~-Ll~~G~ 111 (479)
|++|.|.||+|++|+.|++. |.++++
T Consensus 1 m~kVaIvGAtG~vG~~llr~ll~~~~~ 27 (367)
T 1t4b_A 1 MQNVGFIGWRGMVGSVLMQRMVEERDF 27 (367)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGG
T ss_pred CcEEEEECCCCHHHHHHHHHHHhcCCC
Confidence 36899999999999999995 544554
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.076 Score=50.98 Aligned_cols=34 Identities=15% Similarity=0.322 Sum_probs=29.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSL 119 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~ 119 (479)
|++|.|+||||++|..|++.|.++ ++++..+...
T Consensus 4 M~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~ 38 (337)
T 3dr3_A 4 MLNTLIVGASGYAGAELVTYVNRHPHMNITALTVS 38 (337)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEE
T ss_pred ceEEEEECCCChHHHHHHHHHHhCCCCcEEEEEec
Confidence 579999999999999999999985 5688877543
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.024 Score=55.27 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHh-CCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSN-KGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~-~G~~V~~~dr~~ 120 (479)
.+.+|||+||+|.+|...++.+.. .|.+|+++++..
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~ 207 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRP 207 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCH
Confidence 578999999999999988877765 589999988753
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.078 Score=50.50 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=66.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.|+|.|+|+ |.+|..++..|+..|+ +|+++|+........ ..+..... ... ....+... ++
T Consensus 7 ~mkI~IiGa-G~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~------------~~~~~~~~-~~~-~~~~v~~~--~~ 69 (319)
T 1lld_A 7 PTKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAE------------VLDMQHGS-SFY-PTVSIDGS--DD 69 (319)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHH------------HHHHHHTG-GGS-TTCEEEEE--SC
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHH------------HHHHHhhh-hhc-CCeEEEeC--CC
Confidence 478999998 9999999999999998 999999864211100 00000000 011 11222211 12
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEe
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKL 228 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~ 228 (479)
.+ .++ ++|+||-+++....+.... ...+..|+.....+++...+.+.+..++.+
T Consensus 70 ~~----~~~--~aD~Vii~v~~~~~~g~~r-----~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~ 123 (319)
T 1lld_A 70 PE----ICR--DADMVVITAGPRQKPGQSR-----LELVGATVNILKAIMPNLVKVAPNAIYMLI 123 (319)
T ss_dssp GG----GGT--TCSEEEECCCCCCCTTCCH-----HHHHHHHHHHHHHHHHHHHHHCTTSEEEEC
T ss_pred HH----HhC--CCCEEEECCCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHHhCCCceEEEe
Confidence 22 345 7999999987533221111 224566888888888887776555344443
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.026 Score=56.78 Aligned_cols=34 Identities=24% Similarity=0.414 Sum_probs=31.1
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
|+|.|+|+ |++|..++..|++.|++|+++|+...
T Consensus 3 mkI~VIG~-G~vG~~lA~~La~~G~~V~~~D~~~~ 36 (450)
T 3gg2_A 3 LDIAVVGI-GYVGLVSATCFAELGANVRCIDTDRN 36 (450)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCCEEEEEECCHH
Confidence 68999986 99999999999999999999998654
|
| >4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.068 Score=55.44 Aligned_cols=69 Identities=19% Similarity=0.165 Sum_probs=54.9
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
++++|.|+ |-+|.++++.|.+.|++|+++|...... +. . ..++.||-+|.+.
T Consensus 349 ~~viIiG~-G~~G~~la~~L~~~g~~v~vid~d~~~~--------------------~~---~----~~~i~gD~t~~~~ 400 (565)
T 4gx0_A 349 ELIFIIGH-GRIGCAAAAFLDRKPVPFILIDRQESPV--------------------CN---D----HVVVYGDATVGQT 400 (565)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCEEEEESSCCSS--------------------CC---S----SCEEESCSSSSTH
T ss_pred CCEEEECC-CHHHHHHHHHHHHCCCCEEEEECChHHH--------------------hh---c----CCEEEeCCCCHHH
Confidence 78999998 9999999999999999999999764321 11 1 1789999999998
Q ss_pred HHHHhhhcCCCEEEEccc
Q 011707 167 LSESFKSFEPDAVVHFGE 184 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~ 184 (479)
++++=-+ +.|.||-+.+
T Consensus 401 L~~agi~-~ad~vi~~~~ 417 (565)
T 4gx0_A 401 LRQAGID-RASGIIVTTN 417 (565)
T ss_dssp HHHHTTT-SCSEEEECCS
T ss_pred HHhcCcc-ccCEEEEECC
Confidence 8876433 7899986654
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=95.53 E-value=0.033 Score=55.17 Aligned_cols=70 Identities=17% Similarity=0.191 Sum_probs=52.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+++|+|+|+ |.+|..+++.+.+.|++|+++| ....... . +. .....+.+|..|.
T Consensus 23 ~~~~I~ilGg-G~lg~~l~~aa~~lG~~v~~~d-~~~~p~~-------------------~---~a-d~~~~~~~~~~d~ 77 (403)
T 3k5i_A 23 NSRKVGVLGG-GQLGRMLVESANRLNIQVNVLD-ADNSPAK-------------------Q---IS-AHDGHVTGSFKER 77 (403)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHHHTCEEEEEE-STTCTTG-------------------G---GC-CSSCCEESCTTCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEE-CCCCcHH-------------------H---hc-cccceeecCCCCH
Confidence 4789999998 8999999999999999999998 4321100 0 00 1124567899999
Q ss_pred HHHHHHhhhcCCCEEEE
Q 011707 165 EFLSESFKSFEPDAVVH 181 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih 181 (479)
+.+.++.+ .+|+|+-
T Consensus 78 ~~l~~~a~--~~d~i~~ 92 (403)
T 3k5i_A 78 EAVRQLAK--TCDVVTA 92 (403)
T ss_dssp HHHHHHHT--TCSEEEE
T ss_pred HHHHHHHH--hCCEEEE
Confidence 99999998 6888764
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.026 Score=55.20 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.+.+|||+|+ |.+|...++.+...|+ +|+++++..
T Consensus 182 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~ 217 (370)
T 4ej6_A 182 AGSTVAILGG-GVIGLLTVQLARLAGATTVILSTRQA 217 (370)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 4789999998 9999999998888998 888887643
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.032 Score=51.54 Aligned_cols=35 Identities=23% Similarity=0.379 Sum_probs=32.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
+.|++++|.|+++.+|+.++..|++.|++|+++++
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~ 182 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHS 182 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeC
Confidence 68999999999999999999999999999998754
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.078 Score=50.63 Aligned_cols=37 Identities=24% Similarity=0.197 Sum_probs=33.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+++|.|+|- |-||+.+++.|...|++|+++++..
T Consensus 137 ~l~g~tvGIIGl-G~IG~~vA~~l~~~G~~V~~~dr~~ 173 (324)
T 3hg7_A 137 GLKGRTLLILGT-GSIGQHIAHTGKHFGMKVLGVSRSG 173 (324)
T ss_dssp CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred ccccceEEEEEE-CHHHHHHHHHHHhCCCEEEEEcCCh
Confidence 567999999986 9999999999999999999998754
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.032 Score=54.57 Aligned_cols=36 Identities=19% Similarity=0.142 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
..+.+|||+|+ |.+|...++.+...|. +|+++++..
T Consensus 189 ~~g~~VlV~Ga-G~vG~~avqla~~~Ga~~Vi~~~~~~ 225 (373)
T 2fzw_A 189 EPGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDINK 225 (373)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 35789999996 9999999998888898 799887643
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.019 Score=56.38 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=30.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
..+.+|||+|+ |.+|...++.+...|+ +|+++++..
T Consensus 192 ~~g~~VlV~Ga-G~vG~~a~q~a~~~Ga~~Vi~~~~~~ 228 (378)
T 3uko_A 192 EPGSNVAIFGL-GTVGLAVAEGAKTAGASRIIGIDIDS 228 (378)
T ss_dssp CTTCCEEEECC-SHHHHHHHHHHHHHTCSCEEEECSCT
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEcCCH
Confidence 35789999998 9999999988888898 799988654
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.019 Score=54.90 Aligned_cols=74 Identities=23% Similarity=0.191 Sum_probs=50.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
..+.+|||+||+|.+|...++.+...|.+|+++++..+ .+...++ +... ..|..+
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~---------------------~~~~~~l---Ga~~-~i~~~~ 205 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRN---------------------HAFLKAL---GAEQ-CINYHE 205 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHH---------------------HHHHHHH---TCSE-EEETTT
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccch---------------------HHHHHHc---CCCE-EEeCCC
Confidence 35789999999999999999999999999988764221 1111111 1211 235545
Q ss_pred hHHHHHHhhhcCCCEEEEccc
Q 011707 164 FEFLSESFKSFEPDAVVHFGE 184 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~ 184 (479)
.+.+.+.+. ++|+||++.|
T Consensus 206 ~~~~~~~~~--g~D~v~d~~g 224 (321)
T 3tqh_A 206 EDFLLAIST--PVDAVIDLVG 224 (321)
T ss_dssp SCHHHHCCS--CEEEEEESSC
T ss_pred cchhhhhcc--CCCEEEECCC
Confidence 443555555 8999999987
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.026 Score=55.07 Aligned_cols=36 Identities=22% Similarity=0.210 Sum_probs=31.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+.+|||+| +|.+|...++.+...|++|+++++..
T Consensus 188 ~~g~~VlV~G-~G~vG~~a~qla~~~Ga~Vi~~~~~~ 223 (363)
T 3uog_A 188 RAGDRVVVQG-TGGVALFGLQIAKATGAEVIVTSSSR 223 (363)
T ss_dssp CTTCEEEEES-SBHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 3578999999 89999999999988999999988653
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.047 Score=54.06 Aligned_cols=36 Identities=28% Similarity=0.434 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
..+.+|||+|+ |.+|...++.+...|+ +|+++++..
T Consensus 212 ~~g~~VlV~Ga-G~vG~~aiqlak~~Ga~~Vi~~~~~~ 248 (404)
T 3ip1_A 212 RPGDNVVILGG-GPIGLAAVAILKHAGASKVILSEPSE 248 (404)
T ss_dssp CTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCH
T ss_pred CCCCEEEEECC-CHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 35789999998 9999999998888899 899887643
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.028 Score=53.03 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=33.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+++|+|+|+ |.||+.+++.|...|.+|+++++..
T Consensus 152 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~dr~~ 188 (293)
T 3d4o_A 152 TIHGANVAVLGL-GRVGMSVARKFAALGAKVKVGARES 188 (293)
T ss_dssp CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCCEEEEEee-CHHHHHHHHHHHhCCCEEEEEECCH
Confidence 467899999996 9999999999999999999998754
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.066 Score=50.04 Aligned_cols=34 Identities=18% Similarity=0.345 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhC-CCeEEEE-ec
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNK-GYEVAIV-DS 118 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~-dr 118 (479)
++.+|.|.|++|-+|+.+++.+.+. +.+++++ |+
T Consensus 20 ~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~ 55 (288)
T 3ijp_A 20 GSMRLTVVGANGRMGRELITAIQRRKDVELCAVLVR 55 (288)
T ss_dssp -CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCC
T ss_pred CCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 3568999999999999999998876 6787765 44
|
| >1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.38 E-value=0.029 Score=54.56 Aligned_cols=35 Identities=23% Similarity=0.128 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~ 120 (479)
.+.+|||+|| |.+|...++.+... |++|+++++..
T Consensus 186 ~g~~VlV~Ga-G~vG~~avqlak~~~Ga~Vi~~~~~~ 221 (359)
T 1h2b_A 186 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVKE 221 (359)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 5789999999 99999999988888 99999998643
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.029 Score=53.18 Aligned_cols=71 Identities=17% Similarity=0.177 Sum_probs=50.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+.+++|+|+|+ |.+|+.+++.|...|.+|+++++.... .+...+ .++..+
T Consensus 154 ~l~g~~v~IiG~-G~iG~~~a~~l~~~G~~V~~~d~~~~~--------------------~~~~~~---~g~~~~----- 204 (300)
T 2rir_A 154 TIHGSQVAVLGL-GRTGMTIARTFAALGANVKVGARSSAH--------------------LARITE---MGLVPF----- 204 (300)
T ss_dssp CSTTSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSHHH--------------------HHHHHH---TTCEEE-----
T ss_pred CCCCCEEEEEcc-cHHHHHHHHHHHHCCCEEEEEECCHHH--------------------HHHHHH---CCCeEE-----
Confidence 467899999997 999999999999999999999975431 111111 122222
Q ss_pred ChHHHHHHhhhcCCCEEEEccc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGE 184 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~ 184 (479)
+.++++++++ +.|+|+.+..
T Consensus 205 ~~~~l~~~l~--~aDvVi~~~p 224 (300)
T 2rir_A 205 HTDELKEHVK--DIDICINTIP 224 (300)
T ss_dssp EGGGHHHHST--TCSEEEECCS
T ss_pred chhhHHHHhh--CCCEEEECCC
Confidence 1245777777 7999998875
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.013 Score=56.16 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=30.1
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
+|||+||+|.+|...++.+...|++|+++++..
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~ 184 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKA 184 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 799999999999999999988999999988753
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.03 Score=54.71 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=49.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+.+|||+|+ |.+|...++.+...|.+|+++++.... .+...++ +... ..|..+.
T Consensus 194 ~g~~VlV~Ga-G~vG~~aiqlak~~Ga~Vi~~~~~~~~--------------------~~~a~~l---Ga~~-vi~~~~~ 248 (369)
T 1uuf_A 194 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAK--------------------REAAKAL---GADE-VVNSRNA 248 (369)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGG--------------------HHHHHHH---TCSE-EEETTCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHH--------------------HHHHHHc---CCcE-EeccccH
Confidence 5789999998 889999999888889999998865431 1111111 1111 2355555
Q ss_pred HHHHHHhhhcCCCEEEEcccc
Q 011707 165 EFLSESFKSFEPDAVVHFGEQ 185 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~ 185 (479)
+.++++.. ++|+||+++|.
T Consensus 249 ~~~~~~~~--g~Dvvid~~g~ 267 (369)
T 1uuf_A 249 DEMAAHLK--SFDFILNTVAA 267 (369)
T ss_dssp HHHHTTTT--CEEEEEECCSS
T ss_pred HHHHHhhc--CCCEEEECCCC
Confidence 54544443 79999999874
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.073 Score=53.61 Aligned_cols=98 Identities=23% Similarity=0.423 Sum_probs=67.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.-++|+|.|| |-+|.++++.| +++++|.++.+... +.+.+.+.. ++..++.||-+|+
T Consensus 234 ~~~~v~I~Gg-G~ig~~lA~~L-~~~~~v~iIE~d~~--------------------r~~~la~~l-~~~~Vi~GD~td~ 290 (461)
T 4g65_A 234 PYRRIMIVGG-GNIGASLAKRL-EQTYSVKLIERNLQ--------------------RAEKLSEEL-ENTIVFCGDAADQ 290 (461)
T ss_dssp CCCEEEEECC-SHHHHHHHHHH-TTTSEEEEEESCHH--------------------HHHHHHHHC-TTSEEEESCTTCH
T ss_pred cccEEEEEcc-hHHHHHHHHHh-hhcCceEEEecCHH--------------------HHHHHHHHC-CCceEEeccccch
Confidence 3578999998 99999999987 55799999876543 222322221 4788999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEE
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVK 227 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~ 227 (479)
+-++++=-. ..|++|-.-+. | +.|+. +...|++.|++ +.|-
T Consensus 291 ~~L~ee~i~-~~D~~ia~T~~--------D--------e~Ni~----~~llAk~~gv~-kvIa 331 (461)
T 4g65_A 291 ELLTEENID-QVDVFIALTNE--------D--------ETNIM----SAMLAKRMGAK-KVMV 331 (461)
T ss_dssp HHHHHTTGG-GCSEEEECCSC--------H--------HHHHH----HHHHHHHTTCS-EEEE
T ss_pred hhHhhcCch-hhcEEEEcccC--------c--------HHHHH----HHHHHHHcCCc-cccc
Confidence 988766322 68999965431 1 35664 34567888988 5443
|
| >3cmm_A Ubiquitin-activating enzyme E1 1; UBA1, protein turnover, ligase, conformationa thioester, adenylation, transthioesterification, ATP-bindin nucleotide-binding; 2.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.077 Score=58.42 Aligned_cols=123 Identities=12% Similarity=0.039 Sum_probs=71.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccC----CCCCCccchhhhhhhhhcccCC-CceeEE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLG----LDSLTPIASIHDRLRCWKSLTG-KNIELY 157 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~~v~~v 157 (479)
+...+|||.|+ |++|..+++.|++.|. +++++|...=...+.... ...+. ........+.+.++.. -.+..+
T Consensus 25 L~~s~VlIvG~-GGlGseiak~La~aGVg~itlvD~D~V~~sNL~RQ~l~~~~dvG-~~Ka~a~~~~L~~lNP~v~v~~~ 102 (1015)
T 3cmm_A 25 MQTSNVLILGL-KGLGVEIAKNVVLAGVKSMTVFDPEPVQLADLSTQFFLTEKDIG-QKRGDVTRAKLAELNAYVPVNVL 102 (1015)
T ss_dssp HTTCEEEEECC-SHHHHHHHHHHHHHCCSEEEEECCSBCCGGGGGTCTTCCGGGTT-SBHHHHHHHHHTTSCTTSCEEEC
T ss_pred HhcCEEEEECC-ChHHHHHHHHHHHcCCCeEEEecCCEechhhhccccccChhhcC-hHHHHHHHHHHHHHCCCCeEEEe
Confidence 45679999997 9999999999999996 788887642111111000 00011 0111122223333322 245555
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccC
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~ 236 (479)
..+++. +.+. ++|+||.+.. .|...-..+.++|.+.+ ..||+.++.+.+|.
T Consensus 103 ~~~l~~-----~~l~--~~DvVv~~~d-------------------~~~~~r~~ln~~c~~~~--iplI~~~~~G~~G~ 153 (1015)
T 3cmm_A 103 DSLDDV-----TQLS--QFQVVVATDT-------------------VSLEDKVKINEFCHSSG--IRFISSETRGLFGN 153 (1015)
T ss_dssp CCCCCS-----TTGG--GCSEEEECTT-------------------SCHHHHHHHHHHHHHHT--CEEEEEEEETTEEE
T ss_pred cCCCCH-----HHHh--cCCEEEEcCC-------------------CCHHHHHHHHHHHHHcC--CCEEEEEecccEEE
Confidence 555633 2455 6899996531 14445557778888887 36888777665553
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.02 Score=55.84 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+|||+|+ |.+|...++.+...|++|+++++..
T Consensus 179 ~g~~VlV~Ga-G~vG~~~~qlak~~Ga~Vi~~~~~~ 213 (360)
T 1piw_A 179 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSS 213 (360)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEcCCH
Confidence 5789999999 9999999998888899999998654
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.03 Score=53.59 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=33.9
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..+.+|+|.|+|- |-||+.+++.|...|++|+++++..
T Consensus 133 ~~l~gktvGIiGl-G~IG~~vA~~l~~~G~~V~~~dr~~ 170 (324)
T 3evt_A 133 STLTGQQLLIYGT-GQIGQSLAAKASALGMHVIGVNTTG 170 (324)
T ss_dssp CCSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred ccccCCeEEEECc-CHHHHHHHHHHHhCCCEEEEECCCc
Confidence 3467999999986 9999999999999999999998754
|
| >2dwc_A PH0318, 433AA long hypothetical phosphoribosylglycinamide transferase; purine ribonucleotide biosynthesis; HET: ADP; 1.70A {Pyrococcus horikoshii} PDB: 2czg_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.046 Score=54.64 Aligned_cols=73 Identities=25% Similarity=0.386 Sum_probs=54.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
..|+|||+|+ |.+|..+++.|.+.|++|++++...... .. .+ .-..+..|..|.
T Consensus 18 ~~~~ili~g~-g~~g~~~~~a~~~~G~~v~~v~~~~~~~------------------~~-~~------ad~~~~~~~~d~ 71 (433)
T 2dwc_A 18 SAQKILLLGS-GELGKEIAIEAQRLGVEVVAVDRYANAP------------------AM-QV------AHRSYVGNMMDK 71 (433)
T ss_dssp TCCEEEEESC-SHHHHHHHHHHHHTTCEEEEEESSTTCH------------------HH-HH------SSEEEESCTTCH
T ss_pred CCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEECCCCCh------------------hh-hh------cceEEECCCCCH
Confidence 3579999988 8899999999999999999998643210 00 00 113456788899
Q ss_pred HHHHHHhhhcCCCEEEEcc
Q 011707 165 EFLSESFKSFEPDAVVHFG 183 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A 183 (479)
+.+.++.+..++|+|+...
T Consensus 72 ~~l~~~~~~~~~d~V~~~~ 90 (433)
T 2dwc_A 72 DFLWSVVEREKPDAIIPEI 90 (433)
T ss_dssp HHHHHHHHHHCCSEEEECS
T ss_pred HHHHHHHHHcCCCEEEECc
Confidence 8888888766899998754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 479 | ||||
| d1i24a_ | 393 | c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 | 2e-71 | |
| d2b69a1 | 312 | c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 | 1e-33 | |
| d1kewa_ | 361 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-30 | |
| d1orra_ | 338 | c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella | 2e-29 | |
| d1db3a_ | 357 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escheric | 4e-28 | |
| d1udca_ | 338 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 3e-26 | |
| d1sb8a_ | 341 | c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase W | 1e-24 | |
| d1r6da_ | 322 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 2e-24 | |
| d1z45a2 | 347 | c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-ep | 5e-22 | |
| d1ek6a_ | 346 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-21 | |
| d1gy8a_ | 383 | c.2.1.2 (A:) Uridine diphosphogalactose-4-epimeras | 2e-21 | |
| d1e6ua_ | 315 | c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimeras | 1e-20 | |
| d1t2aa_ | 347 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (H | 3e-20 | |
| d1oc2a_ | 346 | c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) { | 9e-20 | |
| d1rpna_ | 321 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomo | 1e-16 | |
| d1n7ha_ | 339 | c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cr | 5e-16 | |
| d2c5aa1 | 363 | c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {T | 9e-14 | |
| d1y1pa1 | 342 | c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolo | 5e-12 | |
| d1rkxa_ | 356 | c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia | 2e-10 | |
| d2blla1 | 342 | c.2.1.2 (A:316-657) Polymyxin resistance protein A | 8e-07 | |
| d1n2sa_ | 298 | c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reduct | 1e-05 | |
| d1qyca_ | 307 | c.2.1.2 (A:) Phenylcoumaran benzylic ether reducta | 2e-05 | |
| d1cyda_ | 242 | c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus muscul | 2e-05 | |
| d1c0pa1 | 268 | c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxida | 2e-05 | |
| d1qyda_ | 312 | c.2.1.2 (A:) Pinoresinol-lariciresinol reductase { | 5e-05 | |
| d1yo6a1 | 250 | c.2.1.2 (A:1-250) Putative carbonyl reductase snif | 6e-05 | |
| d2iida1 | 370 | c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M | 2e-04 | |
| d1jtva_ | 285 | c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroi | 3e-04 | |
| d1spxa_ | 264 | c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nemato | 3e-04 | |
| d2a4ka1 | 241 | c.2.1.2 (A:2-242) beta-keto acyl carrier protein r | 4e-04 | |
| d1kifa1 | 246 | c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N | 4e-04 | |
| d1xkqa_ | 272 | c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorh | 4e-04 | |
| d1pr9a_ | 244 | c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapie | 5e-04 | |
| d1hdoa_ | 205 | c.2.1.2 (A:) Biliverdin IX beta reductase {Human ( | 0.001 | |
| d1yxma1 | 297 | c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA re | 0.001 | |
| d1dhra_ | 236 | c.2.1.2 (A:) Dihydropteridin reductase (pteridine | 0.001 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 0.001 | |
| d1k2wa_ | 256 | c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter s | 0.002 | |
| d1xg5a_ | 257 | c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC41 | 0.002 | |
| d2bi7a1 | 314 | c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu | 0.002 | |
| d1h5qa_ | 260 | c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Aga | 0.002 | |
| d1vl0a_ | 281 | c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD | 0.002 | |
| d1ryia1 | 276 | c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO { | 0.002 | |
| d2gf3a1 | 281 | c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac | 0.003 | |
| d1x1ta1 | 260 | c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydroge | 0.003 | |
| d1ydea1 | 250 | c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase | 0.003 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 0.003 | |
| d2bgka1 | 268 | c.2.1.2 (A:11-278) Rhizome secoisolariciresinol de | 0.004 |
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 393 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 229 bits (583), Expect = 2e-71
Identities = 347/392 (88%), Positives = 374/392 (95%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
RVM+IGGDGYCGWATALHLS K YEV IVD+L+RRLFDHQLGL+SLTPIASIHDR+ W
Sbjct: 2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRW 61
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
K+LTGK+IELY+GDICDFEFL+ESFKSFEPD+VVHFGEQRSAPYSMIDRSRAV+TQHNNV
Sbjct: 62 KALTGKSIELYVGDICDFEFLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNV 121
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSF 266
IGTLNVLFA+KEF +ECHLVKLGTMGEYGTPNIDIEEGYITI HNGRTDTLPYPKQASSF
Sbjct: 122 IGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGYITITHNGRTDTLPYPKQASSF 181
Query: 267 YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326
YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGV+TDET MHEEL NRLDYD VFGTALN
Sbjct: 182 YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTALN 241
Query: 327 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVN 386
RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVE+AIANPA+ GEFRVFNQFTEQFSVN
Sbjct: 242 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVN 301
Query: 387 QLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLL 446
+LA+LVTKAG KLGLDVK ++VPNPRVEAEEHYYNAKHTKL+ELGL+PH LSDSLLDSLL
Sbjct: 302 ELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLL 361
Query: 447 NFAIQFKDRVDSKQIMPSVSWRKIGTKPKTVA 478
NFA+QFKDRVD+KQIMPSVSW+KIG K K++
Sbjct: 362 NFAVQFKDRVDTKQIMPSVSWKKIGVKTKSMT 393
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 127 bits (319), Expect = 1e-33
Identities = 77/371 (20%), Positives = 124/371 (33%), Gaps = 63/371 (16%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
KR++I GG G+ G L G+EV +VD+ + W
Sbjct: 2 KRILITGGAGFVGSHLTDKLMMDGHEVTVVDNF----------------FTGRKRNVEHW 45
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
+N EL D+ + ++ E D + H S P M + + T N
Sbjct: 46 IGH--ENFELINHDVVEPLYI-------EVDQIYHLASPASPPNYMYN---PIKTLKTNT 93
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSF 266
IGTLN+L K L+ T YG P E + ++ G + P +
Sbjct: 94 IGTLNMLGLAKRVG--ARLLLASTSEVYGDP----EVHPQSEDYWGHVN----PIGPRAC 143
Query: 267 YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326
Y K K G+ +G R G ++
Sbjct: 144 YDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPR---------------MHMNDGRVVS 188
Query: 327 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVN 386
F +QA G PLTVYG G QTR + + D V + +A+ N + N
Sbjct: 189 NFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGL-VALMNSNVSSPVNLGNPEEHTILEF 247
Query: 387 QLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLL 446
+G + + + + ++ + K KL LG +P + L + L
Sbjct: 248 AQLIK-----NLVGSGSEIQFLSEAQDDPQKRKPDIKKAKL-MLGWEPVV---PLEEGLN 298
Query: 447 NFAIQFKDRVD 457
F+ ++
Sbjct: 299 KAIHYFRKELE 309
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 361 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 119 bits (298), Expect = 2e-30
Identities = 61/359 (16%), Positives = 112/359 (31%), Gaps = 49/359 (13%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
+++I GG G+ G A H+ + + +D LT ++ + L
Sbjct: 2 KILITGGAGFIGSAVVRHIIKNTQDTVV-------------NIDKLTYAGNL-ESLSDIS 47
Query: 148 SLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
DICD ++ F+ ++PDAV+H + S+ + + N++
Sbjct: 48 E--SNRYNFEHADICDSAEITRIFEQYQPDAVMHLAAESHVDRSITGPAAFI---ETNIV 102
Query: 208 GTLNVLFAMKEF--------RQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPY 259
GT +L +++ + + T YG E T
Sbjct: 103 GTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDLPHPDEVENSVTLPLFTETTAYA 162
Query: 260 PKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDG 319
P SS Y SK H + + +G+ N YG
Sbjct: 163 P---SSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPY-----------------H 202
Query: 320 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRV-FNQ 378
+ + A G PL +YGKG Q R +L + D + + + + + + +
Sbjct: 203 FPEKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKAGETYNIGGHN 262
Query: 379 FTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLI-ELGLQPHI 436
+ V + + + Y K+ ELG +P
Sbjct: 263 EKKNLDVVFTICDLLDEIVPKATSYREQITYVADRPGHDRRYAIDAGKISRELGWKPLE 321
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Score = 115 bits (289), Expect = 2e-29
Identities = 67/355 (18%), Positives = 123/355 (34%), Gaps = 40/355 (11%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
+++I GG G+ G A ++G ++ + D+L R+ D L
Sbjct: 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRK---------------GATDNLHWLS 46
Query: 148 SLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
SL N E GDI + ++ + PD+ H Q + S+ + NV
Sbjct: 47 SL--GNFEFVHGDIRNKNDVTRLITKYMPDSCFHLAGQVAMTTSIDN---PCMDFEINVG 101
Query: 208 GTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPY---PKQAS 264
GTLN+L A++++ C+++ T YG T
Sbjct: 102 GTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETETRYTCVDKPNGYDESTQLDFH 161
Query: 265 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324
S Y SK + + +G+ +YG R T +
Sbjct: 162 SPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATYDQGWVGWFCQK------- 214
Query: 325 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ-PGEFRVFNQFTEQ- 382
++ + P T+ G G Q R L D + A+AN ++ G
Sbjct: 215 --AVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGNAFNIGGTIVNS 272
Query: 383 FSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLI-ELGLQPHI 436
S+ +L L+ +D++ ++P E+++ + A K+ + P +
Sbjct: 273 LSLLELFKLLEDY---CNIDMRFTNLPVR--ESDQRVFVADIKKITNAIDWSPKV 322
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Score = 112 bits (281), Expect = 4e-28
Identities = 52/312 (16%), Positives = 90/312 (28%), Gaps = 48/312 (15%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
K +I G G G A L KGYEV + ++ D +
Sbjct: 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTERV------------DHIYQD 49
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
L+ GD+ D L+ + +PD V + G S +T +
Sbjct: 50 PHTCNPKFHLHYGDLSDTSNLTRILREVQPDEVYNLGAMSHVAVSFES---PEYTADVDA 106
Query: 207 IGTLNVLFAMKEF--RQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS 264
+GTL +L A++ ++ + T YG +E P
Sbjct: 107 MGTLRLLEAIRFLGLEKKTRFYQASTSELYGLV----QEIPQKETT---------PFYPR 153
Query: 265 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324
S Y ++K++ +++G+ A + R V
Sbjct: 154 SPYAVAKLYAYWITVNYRESYGMYACNGILFNHES-------------PRRGETFVTRKI 200
Query: 325 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQF 383
A G R + +D V+ + + + F T Q+
Sbjct: 201 TRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQ----EQPEDFVIATGVQY 256
Query: 384 SVNQLAALVTKA 395
SV Q +
Sbjct: 257 SVRQFVEMAAAQ 268
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} Length = 338 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Score = 106 bits (265), Expect = 3e-26
Identities = 73/360 (20%), Positives = 113/360 (31%), Gaps = 56/360 (15%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
RV++ GG GY G T + L G++V I+D+L S L +
Sbjct: 2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCN----------------SKRSVLPVIE 45
Query: 148 SLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
L GK+ GDI + ++E D V+HF ++ S+ + NNV
Sbjct: 46 RLGGKHPTFVEGDIRNEALMTEILHDHAIDTVIHFAGLKAVGESVQK---PLEYYDNNVN 102
Query: 208 GTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFY 267
GTL ++ AM+ + + P I E + T S Y
Sbjct: 103 GTLRLISAMRAANVKNFIFSSSATVYGDQPKIPYVESFPTGTPQ-------------SPY 149
Query: 268 HLSKVHDSH-NIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326
SK+ L G + + L
Sbjct: 150 GKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPS--------GDMGEDPQGIPNNLM 201
Query: 327 RFCVQAAVGH--PLTVYGK------GGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQ 378
+ Q AVG L ++G G R Y+ + D +A+ A ++N
Sbjct: 202 PYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNL 261
Query: 379 -FTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLI-ELGLQPHI 436
SV + +KA G V P E + Y A +K EL +
Sbjct: 262 GAGVGNSVLDVVNAFSKA---CGKPVNYHFAPRR--EGDLPAYWADASKADRELNWRVTR 316
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} Length = 341 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Score = 102 bits (254), Expect = 1e-24
Identities = 69/356 (19%), Positives = 118/356 (33%), Gaps = 47/356 (13%)
Query: 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDR 142
P++ K +I G G+ G L +V +D+ HQ LD + + S
Sbjct: 13 PAQPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFAT---GHQRNLDEVRSLVSEKQW 69
Query: 143 LRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQ 202
N + GDI + + + D V+H S P S+ D + +
Sbjct: 70 ---------SNFKFIQGDIRNLDDCN--NACAGVDYVLHQAALGSVPRSINDP---ITSN 115
Query: 203 HNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG-TPNIDIEEGYITINHNGRTDTLPYPK 261
N+ G LN+L A ++ + + YG P + E DT+ P
Sbjct: 116 ATNIDGFLNMLIAARDAKV-QSFTYAASSSTYGDHPGLPKVE-----------DTIGKPL 163
Query: 262 QASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321
S Y ++K + + +G L V+ R D +G +
Sbjct: 164 ---SPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVF-------------GRRQDPNGAY 207
Query: 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381
+ ++ G + + G G +R + I +TVQ LA
Sbjct: 208 AAVIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDARNQVYNIAVGG 267
Query: 382 QFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLI-ELGLQPHI 436
+ S+NQL + + G+ V E + + A +K LG P
Sbjct: 268 RTSLNQLFFALRDGLAENGVSYHREPVYRDFREGDVRHSLADISKAAKLLGYAPKY 323
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} Length = 322 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Score = 101 bits (252), Expect = 2e-24
Identities = 68/368 (18%), Positives = 113/368 (30%), Gaps = 57/368 (15%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
R+++ GG G+ G L Y D +I LDSLT +R
Sbjct: 2 RLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVI--------VLDSLT---YAGNRANLAP 50
Query: 148 SLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
+ GDI D + + DA+VHF + S+ S NV
Sbjct: 51 VDADPRLRFVHGDIRDAGL--LARELRGVDAIVHFAAESHVDRSIAGASVFT---ETNVQ 105
Query: 208 GTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFY 267
GT +L + +V + T YG+ + G T + P + +S Y
Sbjct: 106 GTQTLLQCAVDAGV-GRVVHVSTNQVYGSI----DSGSWTESS---------PLEPNSPY 151
Query: 268 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNR 327
SK + +G+ YG +
Sbjct: 152 AASKAGSDLVARAYHRTYGLDVRITRCCNNYGPY-----------------QHPEKLIPL 194
Query: 328 FCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQ 387
F G L +YG G R ++ D + + L +A + +
Sbjct: 195 FVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRAGEIYHIGGGLELTNREL- 253
Query: 388 LAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLI-ELGLQPHILSDSLLDSLL 446
+ LG D ++ R + + Y+ K+ ELG +P + S D L
Sbjct: 254 ----TGILLDSLGADWSSVRKVADR-KGHDLRYSLDGGKIERELGYRPQV---SFADGLA 305
Query: 447 NFAIQFKD 454
+++
Sbjct: 306 RTVRWYRE 313
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 94.7 bits (234), Expect = 5e-22
Identities = 67/363 (18%), Positives = 120/363 (33%), Gaps = 52/363 (14%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
K V++ GG GY G T + L GY+ + D+L S +D +
Sbjct: 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSN----------------STYDSVARL 45
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
+ LT +I Y D+CD + L + FK ++ D+V+HF ++ S + HNN+
Sbjct: 46 EVLTKHHIPFYEVDLCDRKGLEKVFKEYKIDSVIHFAGLKAVGEST---QIPLRYYHNNI 102
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSF 266
+GT+ +L M+++ + P ++
Sbjct: 103 LGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPE----------ECPLGPTNP 152
Query: 267 YHLSK--VHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324
Y +K + + N + + L G +
Sbjct: 153 YGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPS--------GLIGEDPLGIPNN 204
Query: 325 LNRFCVQAAVGH--PLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQ 382
L + Q AVG L ++G +R IRD + V+LA + A +N+
Sbjct: 205 LLPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGL 264
Query: 383 FSVNQLAA--------LVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLI-ELGLQ 433
L + + + G+D+ + AK + EL Q
Sbjct: 265 CREWNLGSGKGSTVFEVYHAFCKASGIDLPYKVTGRR--AGDVLNLTAKPDRAKRELKWQ 322
Query: 434 PHI 436
+
Sbjct: 323 TEL 325
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Score = 92.8 bits (229), Expect = 2e-21
Identities = 73/362 (20%), Positives = 118/362 (32%), Gaps = 50/362 (13%)
Query: 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRC 145
A++V++ GG GY G T L L GY ++D+ ++ S+ + LR
Sbjct: 2 AEKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFH----------NAFRGGGSLPESLRR 51
Query: 146 WKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNN 205
+ LTG+++E DI D L FK + AV+HF ++ S+ N
Sbjct: 52 VQELTGRSVEFEEMDILDQGALQRLFKKYSFMAVIHFAGLKAVGESVQKPLD---YYRVN 108
Query: 206 VIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASS 265
+ GT+ +L MK + D ++
Sbjct: 109 LTGTIQLLEIMKAHGVKNL-------------VFSSSATVYGNPQYLPLDEAHPTGGCTN 155
Query: 266 FYHLSKVHDSHNIAFTCKA-WGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324
Y SK I C+A A L G +
Sbjct: 156 PYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHAS--------GCIGEDPQGIPNN 207
Query: 325 LNRFCVQAAVGH--PLTVYGK------GGQTRGYLDIRDTVQCVELAIANPAQPGEFRVF 376
L + Q A+G L V+G G R Y+ + D + A+ + R++
Sbjct: 208 LMPYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIY 267
Query: 377 N-QFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLI-ELGLQP 434
N +SV Q+ + KA G + V E + A + ELG
Sbjct: 268 NLGTGTGYSVLQMVQAMEKA---SGKKIPYKVVARR--EGDVAACYANPSLAQEELGWTA 322
Query: 435 HI 436
+
Sbjct: 323 AL 324
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} Length = 383 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Score = 93.3 bits (230), Expect = 2e-21
Identities = 69/388 (17%), Positives = 121/388 (31%), Gaps = 40/388 (10%)
Query: 88 RVMIIGGDGYCGWATALHL-SNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
RV++ GG GY G L + + V IVDSL+ +
Sbjct: 4 RVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKSDHVETRENVARKLQQSDGPK 63
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
+ L +GD+ + +FL + V A M + + +
Sbjct: 64 PPWADRYAALEVGDVRNEDFL---------NGVFTRHGPIDAVVHMCAFLAVGESVRDPL 114
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSF 266
N + + Q L K + + I +++ N + K S
Sbjct: 115 KYYDNNVVGILRLLQAMLLHKCDKIIFSSSAAIFGNPTMGSVSTNAEPIDINAKKSPESP 174
Query: 267 YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326
Y SK+ I +A+GI+ L G D + + G ++
Sbjct: 175 YGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHYQGSTHLIPIILGRVMS 234
Query: 327 --------RFCVQAAVGHPLTVYGK------GGQTRGYLDIRDTVQCVELAIANPAQPGE 372
A+ + ++G G R Y+ + D LA+ + G
Sbjct: 235 DIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGP 294
Query: 373 ------FRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHT 425
F VFN T +SV ++ + K G + E + Y A
Sbjct: 295 NDKSKYFSVFNLGTSRGYSVREVIEVARKT---TGHPIPVRECGRR--EGDPAYLVAASD 349
Query: 426 KLIE-LGLQPHILSDSLLDSLLNFAIQF 452
K E LG +P L++++ + +F
Sbjct: 350 KAREVLGWKPKY---DTLEAIMETSWKF 374
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Score = 89.9 bits (222), Expect = 1e-20
Identities = 43/357 (12%), Positives = 91/357 (25%), Gaps = 63/357 (17%)
Query: 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRL 143
+K +RV I G G G A L +G ++ +
Sbjct: 1 AK-QRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRDE---------------------- 37
Query: 144 RCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQH 203
++ D + + F S D V + + +
Sbjct: 38 ---------------LNLLDSRAVHDFFASERIDQVYLAAAKVGGIVANNTYPADFI--Y 80
Query: 204 NNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQA 263
N++ N++ A + L+ LG+ Y + + P
Sbjct: 81 QNMMIESNIIHAAHQNDVN-KLLFLGSSCIYPKLA------KQPMAESELLQGTLEP--T 131
Query: 264 SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323
+ Y ++K+ + +G + +YG + + + L
Sbjct: 132 NEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSNSHVIPALLR------ 185
Query: 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQF 383
A + V+G G R +L + D + + +
Sbjct: 186 --RFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHIN 243
Query: 384 SV----NQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHI 436
+ L + +G + + + T+L +LG I
Sbjct: 244 VGTGVDCTIRELAQTIAKVVGYKGRVVFDASKP--DGTPRKLLDVTRLHQLGWYHEI 298
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Score = 89.6 bits (221), Expect = 3e-20
Identities = 58/382 (15%), Positives = 104/382 (27%), Gaps = 56/382 (14%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
+I G G G A L KGYEV + S I +
Sbjct: 2 NVALITGITGQDGSYLAEFLLEKGYEVHGIVR-----------RSSSFNTGRIEHLYKNP 50
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
++ N++L+ GD+ D L + +P + + G Q S +T +
Sbjct: 51 QAHIEGNMKLHYGDLTDSTCLVKIINEVKPTEIYNLGAQSHVKISFDLAE---YTADVDG 107
Query: 207 IGTLNVLFAMKEF--RQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS 264
+GTL +L A+K + T YG +E P
Sbjct: 108 VGTLRLLDAVKTCGLINSVKFYQASTSELYGKV----QEIPQKETT---------PFYPR 154
Query: 265 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324
S Y +K++ + +A+ + A + R + V
Sbjct: 155 SPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHES-------------PRRGANFVTRKI 201
Query: 325 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPG------------- 371
G R + +D V+ + L + N
Sbjct: 202 SRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPEDFVIATGEVHSVRE 261
Query: 372 EFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLI-EL 430
+ V + K V E + TK +L
Sbjct: 262 FVEKSFLHIGKTIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKL 321
Query: 431 GLQPHILSDSLLDSLLNFAIQF 452
+P + D L+ +++ ++
Sbjct: 322 NWKPRVAFDELVREMVHADVEL 343
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Score = 88.1 bits (217), Expect = 9e-20
Identities = 72/353 (20%), Positives = 120/353 (33%), Gaps = 48/353 (13%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
+ K +++ GG G+ G ++ N +V + LD LT A L
Sbjct: 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVT------------VLDKLTY-AGNKANL- 46
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHN 204
+++ G +EL +GDI D E + + + VH+ + S+ D H
Sbjct: 47 --EAILGDRVELVVGDIADAELVDKLAAKADAI--VHYAAESHNDNSLND---PSPFIHT 99
Query: 205 NVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS 264
N IGT +L A +++ H V T YG + + + T S
Sbjct: 100 NFIGTYTLLEAARKYDIRFHHV--STDEVYGDLPLREDLPGHGEGPGEKF-TAETNYNPS 156
Query: 265 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324
S Y +K + +++G++AT N YG
Sbjct: 157 SPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPY-----------------QHIEKF 199
Query: 325 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFS 384
+ R G +YG+G R ++ D V AI + GE + E+ +
Sbjct: 200 IPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGV-WAILTKGRMGETYLIGADGEKNN 258
Query: 385 VNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLI-ELGLQPHI 436
L ++ K G+ K + Y +KL ELG P
Sbjct: 259 KEVLELILEKMGQP-----KDAYDHVTDRAGHDLRYAIDASKLRDELGWTPQF 306
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} Length = 321 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 78.5 bits (192), Expect = 1e-16
Identities = 51/353 (14%), Positives = 101/353 (28%), Gaps = 55/353 (15%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
+ ++ G G G A L KGY V + + S R R
Sbjct: 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVAR-----------------RSSDTRWRLR 43
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
+ +I+ GD+ D + ++ + + ++ V T +
Sbjct: 44 ELGIEGDIQYEDGDMADACSV---QRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDG 100
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSF 266
+G ++L A+++F E + T +G + + P+ + S
Sbjct: 101 LGVTHLLEAIRQFSPETRFYQASTSEMFGLI-----------QAERQDENTPFYPR--SP 147
Query: 267 YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326
Y ++K++ +++G+ A+ + V +
Sbjct: 148 YGVAKLYGHWITVNYRESFGLHASSGILFNHESPLR-------------GIEFVTRKVTD 194
Query: 327 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVN 386
G R + D V+ + L + T +
Sbjct: 195 AVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATGVTTTVRDMC 254
Query: 387 QLAALVTKAGEKLGLDVKTISVPNPRV--EAEEHYYNAKHTKLI-ELGLQPHI 436
Q+A E +GLD + +P AE K LG +P
Sbjct: 255 QIAF------EHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRT 301
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 77.0 bits (188), Expect = 5e-16
Identities = 53/370 (14%), Positives = 97/370 (26%), Gaps = 42/370 (11%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
K +I G G G L KGYEV + S I+
Sbjct: 2 KIALITGITGQDGSYLTEFLLGKGYEVHGLIR-----------RSSNFNTQRINHIYIDP 50
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
++ ++L+ D+ D L +PD V + Q S +T
Sbjct: 51 HNVNKALMKLHYADLTDASSLRRWIDVIKPDEVYNLAAQSHVAVSFEI---PDYTADVVA 107
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSF 266
G L +L A++ + T +P+ S
Sbjct: 108 TGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQ-------SETTPFHPR---SP 157
Query: 267 YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326
Y SK +A+G+ A + R E + V
Sbjct: 158 YAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGE-------------NFVTRKITR 204
Query: 327 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVN 386
G +R + D V+ + L + +
Sbjct: 205 ALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPDDYVVATEEGHTVEEFL 264
Query: 387 QLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLI-ELGLQPHILSDSLLDSL 445
++ K +++ AE +K LG +P + + L+ +
Sbjct: 265 DVSFGYLGLNWKDYVEID----QRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMM 320
Query: 446 LNFAIQFKDR 455
++ ++ R
Sbjct: 321 VDEDLELAKR 330
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 363 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 70.4 bits (171), Expect = 9e-14
Identities = 53/379 (13%), Positives = 110/379 (29%), Gaps = 61/379 (16%)
Query: 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDR 142
PS+ ++ I G G+ A L ++G+ V D +
Sbjct: 12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDM-------------- 57
Query: 143 LRCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQ 202
E ++ D+ E + + D V + +S
Sbjct: 58 ---------FCDEFHLVDLRVMENCLKVTEGV--DHVFNLAADM--GGMGFIQSNHSVIM 104
Query: 203 HNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQ 262
+NN + + N++ A + + ++ + + +P +
Sbjct: 105 YNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDA-------WPAE 157
Query: 263 ASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322
+ L K+ K +GI +YG E+
Sbjct: 158 PQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPA--------- 208
Query: 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFN-QFTE 381
++G G QTR + I + V+ V + + N E
Sbjct: 209 ---AFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDFR----EPVNIGSDE 261
Query: 382 QFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDS 440
S+N++A +V + +P P N+ + + E LG P++
Sbjct: 262 MVSMNEMAEMVLSF---EEKKLPIHHIPGP---EGVRGRNSDNNLIKEKLGWAPNM---R 312
Query: 441 LLDSLLNFAIQFKDRVDSK 459
L + L K++++ +
Sbjct: 313 LKEGLRITYFWIKEQIEKE 331
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Score = 64.8 bits (156), Expect = 5e-12
Identities = 45/362 (12%), Positives = 85/362 (23%), Gaps = 35/362 (9%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
+ V++ G +G+ L GY+V S + +A++ R
Sbjct: 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTA-------------RSASKLANLQKRWD 56
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHN 204
G+ + D+ E K A + S Y +
Sbjct: 57 --AKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIASVVSFSNKYDEV--------VTP 106
Query: 205 NVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS 264
+ GTLN L A V + P ++E Y+ +
Sbjct: 107 AIGGTLNALRAAAATPSVKRFVLTSSTVSALIPKPNVEGIYLDEKSWN-----LESIDKA 161
Query: 265 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324
S S + K A T + + +
Sbjct: 162 KTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPETQSGS 221
Query: 325 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFS 384
+ + + G + Y+ D + P F
Sbjct: 222 TSGWMMSLFNGEVSPALA-LMPPQYYVSAVDIGLLHLGCLVLPQIERRRVYGTA--GTFD 278
Query: 385 VNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHI-LSDSLLD 443
N + A + P+ + + L LG + +S+ D
Sbjct: 279 WNTVLATF---RKLYPSKTFPADFPDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKD 335
Query: 444 SL 445
+
Sbjct: 336 LV 337
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Score = 59.9 bits (143), Expect = 2e-10
Identities = 59/382 (15%), Positives = 105/382 (27%), Gaps = 47/382 (12%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
+ KRV + G G+ G +L L G V + SL A + D
Sbjct: 7 QGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA-------PTVPSLFETARVAD--- 56
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHN 204
++ IGDI D L ES + F+P+ V H Q S + T
Sbjct: 57 --------GMQSEIGDIRDQNKLLESIREFQPEIVFHMAAQPLVRLSYSEPVETYSTNVM 108
Query: 205 NVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPY-PKQA 263
GT+ +L A++ + E + + PY +
Sbjct: 109 ---GTVYLLEAIRHVGGVKA----VVNITSDKCYDNKEWIWGYRENEAMGGYDPYSNSKG 161
Query: 264 SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323
+ S +S G + G V G
Sbjct: 162 CAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWAL-----------------D 204
Query: 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFR--VFNQFTE 381
+ ++A + R + + + + L G +N
Sbjct: 205 RIVPDILRAFEQSQPVIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPN 264
Query: 382 QFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLI-ELGLQPHILSDS 440
+ +V + + G N E HY +K +LG P ++
Sbjct: 265 DADATPVKNIVEQMVKYWGEGASWQLDGNAH-PHEAHYLKLDCSKAKMQLGWHPRWNLNT 323
Query: 441 LLDSLLNFAIQFKDRVDSKQIM 462
L+ ++ + + D +
Sbjct: 324 TLEYIVGWHKNWLSGTDMHEYS 345
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Score = 48.4 bits (113), Expect = 8e-07
Identities = 57/384 (14%), Positives = 107/384 (27%), Gaps = 60/384 (15%)
Query: 88 RVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
RV+I+G +G+ G L + YEV +D +
Sbjct: 2 RVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAI----------------------S 39
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNV 206
+ L + GDI E + D V+ + + R
Sbjct: 40 RFLNHPHFHFVEGDISIHSEWIEYHVK-KCDVVLPLVAIATPIEYTRNPLRVFELDFEEN 98
Query: 207 IGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSF 266
+ + ++ ++ M + D + + R
Sbjct: 99 LRIIRYCVKYRKRIIFPSTSEVYGMCSDKYFDEDHSNLIVGPVNKPRW-----------I 147
Query: 267 YHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALN 326
Y +SK I + G++ + + M L N A+
Sbjct: 148 YSVSKQLLDRVIWAYGEKEGLQ---------FTLFRPFNWMGPRLDNLNAARIGSSRAIT 198
Query: 327 RFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSV- 385
+ + G P+ + G Q R + DIRD ++ + I N + + N +
Sbjct: 199 QLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEAS 258
Query: 386 -NQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKH----------TKLI-ELGLQ 433
+L ++ + EK L RV YY + L +
Sbjct: 259 IEELGEMLLASFEKHPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWE 318
Query: 434 PHILSDSLLDSLLNFAIQFKDRVD 457
P I + +++ F VD
Sbjct: 319 PKI---DMQETIDETLDFFLRTVD 339
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Score = 44.9 bits (104), Expect = 1e-05
Identities = 26/231 (11%), Positives = 57/231 (24%), Gaps = 39/231 (16%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
+++ G G GW L+ G +A+
Sbjct: 2 NILLFGKTGQVGWELQRSLAPVGNLIAL-------------------------------- 29
Query: 148 SLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
+ + + GD + + ++E+ + PD +V+ + + + A +V
Sbjct: 30 ---DVHSKEFCGDFSNPKGVAETVRKLRPDVIVNAAAHTAVDKAESEPELAQLLNATSVE 86
Query: 208 GTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFY 267
+ GT +I +E T N T ++A
Sbjct: 87 AIAKAANETGAWVVHYS----TDYVFPGTGDIPWQETDATSPLNVYGKTKLAGEKALQDN 142
Query: 268 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318
+ + + K T L + +
Sbjct: 143 CPKHLIFRTSWVYAGKGNNFAKTMLRLAKERQTLSVINDQYGAPTGAELLA 193
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} Length = 307 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Score = 44.4 bits (103), Expect = 2e-05
Identities = 55/387 (14%), Positives = 98/387 (25%), Gaps = 89/387 (22%)
Query: 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRL 143
S+ R+++IG GY G A + G+ L + +S ++
Sbjct: 2 SR-SRILLIGATGYIGRHVAKASLDLGHPT--------------FLLVRESTASSNSEKA 46
Query: 144 RCWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQH 203
+ +S + G I D L E+ K+ + Q + ++I + V T
Sbjct: 47 QLLESFKASGANIVHGSIDDHASLVEAVKNVDVVISTVGSLQIESQVNIIKAIKEVGTVK 106
Query: 204 NNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQA 263
Sbjct: 107 RFFPSEFGN---------------------------------------------DVDNVH 121
Query: 264 SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323
+ S + +A GI T ++ G L G
Sbjct: 122 AVEPAKSVFEVKAKVRRAIEAEGIPYTYVSSNCFAG-------------YFLRSLAQAGL 168
Query: 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQF 383
A + + G G ++ D A+ +P +
Sbjct: 169 -------TAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNKTLYLRLPANTL 221
Query: 384 SVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLD 443
S+N+L AL K + ++ VP EE T S +
Sbjct: 222 SLNELVALWEKK---IDKTLEKAYVP-----EEEVLKLIADTPFPANISIAISHSIFVKG 273
Query: 444 SLLNFAIQFKDRVDSKQIMPSVSWRKI 470
NF I V++ Q+ P V + +
Sbjct: 274 DQTNFEIG-PAGVEASQLYPDVKYTTV 299
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 43.8 bits (103), Expect = 2e-05
Identities = 33/234 (14%), Positives = 67/234 (28%), Gaps = 46/234 (19%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
R ++ G G T L G +V V + + + S+
Sbjct: 6 LRALVTGAGKGIGRDTVKALHASGAKVVAVT-------------RTNSDLVSLAKEC--- 49
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEP-DAVVH-FGEQRSAPYSMIDRSRAVFTQHN 204
IE D+ D++ ++ P D +V+ P+ + + +
Sbjct: 50 -----PGIEPVCVDLGDWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSV 104
Query: 205 NVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS 264
N+ V +V + +I +N + + +P +
Sbjct: 105 NLRSVFQV----------SQMVARDMINRGVPGSI--------VNVSSMVAHVTFPNLIT 146
Query: 265 SFYHLSK---VHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRL 315
Y +K + +A IR +N VV + + E +L
Sbjct: 147 --YSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKKVSADPEFARKL 198
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Score = 43.5 bits (101), Expect = 2e-05
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVD 117
KRV+++G G G ++AL L+ KGY V I+
Sbjct: 7 KRVVVLGS-GVIGLSSALILARKGYSVHILA 36
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} Length = 312 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Score = 42.8 bits (99), Expect = 5e-05
Identities = 44/386 (11%), Positives = 106/386 (27%), Gaps = 83/386 (21%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
K RV+I+GG GY G + G+ ++ + S D+++
Sbjct: 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRP---------------EVVSNIDKVQ 46
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHN 204
+L + D + L ++ K + +
Sbjct: 47 MLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISALA----------------GGVLSH 90
Query: 205 NVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS 264
+++ L ++ A+KE + + ++
Sbjct: 91 HILEQLKLVEAIKEAGNIKRFLPSEFGMDPDIMEHALQ---------------------- 128
Query: 265 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324
D + +A I T ++ + G G+
Sbjct: 129 --PGSITFIDKRKVRRAIEAASIPYTYVSSNMFAGYFA-------------------GSL 167
Query: 325 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFS 384
+ +YG G ++D D +I +P + S
Sbjct: 168 AQLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNKTMYIRPPMNILS 227
Query: 385 VNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDS 444
++ + + ++ I + +++ + K E ++ H+
Sbjct: 228 QKEVIQIWERL---SEQNLDKIYIS-----SQDFLADMKDKSYEEKIVRCHLYQIFFRGD 279
Query: 445 LLNFAIQFKDRVDSKQIMPSVSWRKI 470
L NF I + +++ ++ P V + +
Sbjct: 280 LYNFEIG-PNAIEATKLYPEVKYVTM 304
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Score = 42.2 bits (98), Expect = 6e-05
Identities = 31/233 (13%), Positives = 65/233 (27%), Gaps = 38/233 (16%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
V++ G + G L I+ + ++
Sbjct: 4 GSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDV------------------EKATEL 45
Query: 147 KSLTGKNIELYIGDICD-------FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAV 199
KS+ + + + + E S +++ + + + +RAV
Sbjct: 46 KSIKDSRVHVLPLTVTCDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAV 105
Query: 200 FTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPY 259
+ +V N + ++ L+K E G ITI+ + T
Sbjct: 106 IAEQLDV----NTTSVVLLTQKLLPLLKNAASKESGDQLSVSRAAVITISSGLGSITDNT 161
Query: 260 PKQASSF---YHLSKVHDSH---NIAFTCKAWGIRATDLNQGVVYGVRTDETA 306
A Y +SK + +A K + + G V+T+
Sbjct: 162 SGSAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGW---VQTNLGG 211
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Score = 40.9 bits (94), Expect = 2e-04
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 5/46 (10%)
Query: 72 SRSGLHQSSNDPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVD 117
+R+GL +SN K V+I+G G G + A L+ G++V +++
Sbjct: 20 ARNGLKATSN----PKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLE 60
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (94), Expect = 3e-04
Identities = 38/235 (16%), Positives = 68/235 (28%), Gaps = 48/235 (20%)
Query: 86 AKRVMII-GGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
A+ V++I G G A+ L++ + V + +R L ++ +A L
Sbjct: 1 ARTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKTQGRLWEAARALACPPGSLE 60
Query: 145 CWKSLTGKNIELYIGDICDFE----FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVF 200
+ D+ D + + V + G P +
Sbjct: 61 TLQ-----------LDVRDSKSVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVAS 109
Query: 201 TQHNNVIGTLN----VLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDT 256
NV+GT+ L MK LV G G P
Sbjct: 110 VLDVNVVGTVRMLQAFLPDMKRRGSGRVLVTGSVGGLMGLPF-----------------N 152
Query: 257 LPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEEL 311
Y + L + ++A +G+ + + G V TA E++
Sbjct: 153 DVYCASKFALEGLCE-----SLAVLLLPFGVHLSLIECGPV------HTAFMEKV 196
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.3 bits (94), Expect = 3e-04
Identities = 34/237 (14%), Positives = 69/237 (29%), Gaps = 48/237 (20%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
K +I G G ATA+ + +G +V I + ++
Sbjct: 6 KVAIITGSSNGIGRATAVLFAREGAKVTITGR-------------HAERLEETRQQILA- 51
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFE-----PDAVVH-----FGEQRSAPYSMIDRS 196
++ +N+ + D+ E + D +V+ + +S +
Sbjct: 52 AGVSEQNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIE 111
Query: 197 RAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDT 256
T + N+ + + P++ +G I + +
Sbjct: 112 SYDATLNLNLRSVIALTKKA-------------------VPHLSSTKGEIVNISSIASGL 152
Query: 257 LPYPKQASSFYHLSK---VHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEE 310
P Y ++K + N A GIR ++ G+V M EE
Sbjct: 153 HATPDFPY--YSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEE 207
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Score = 39.7 bits (92), Expect = 4e-04
Identities = 34/244 (13%), Positives = 67/244 (27%), Gaps = 41/244 (16%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
K +++ G G A + +G + VD R L
Sbjct: 4 SGKTILVTGAASGIGRAALDLFAREGASLVAVD---RE-----------------ERLLA 43
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHN 204
+ + D+ D ++ ++ +A+ FG R V
Sbjct: 44 EAVAALEAEAIAVVADVSD----PKAVEAVFAEALEEFG-----------RLHGVAHFAG 88
Query: 205 NVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS 264
L+ ++ + + + G+ +EEG + +
Sbjct: 89 VAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLGAFGLAHY 148
Query: 265 SFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324
+ L V + +A G+R L G++ +T M L V +
Sbjct: 149 AAGKLGVVGLARTLALELARKGVRVNVLLPGLI------QTPMTAGLPPWAWEQEVGASP 202
Query: 325 LNRF 328
L R
Sbjct: 203 LGRA 206
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Score = 39.5 bits (91), Expect = 4e-04
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118
RV++IG G G +TAL + + + V
Sbjct: 2 RVVVIGA-GVIGLSTALCIHERYHSVLQPLD 31
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} Length = 272 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Score = 39.6 bits (92), Expect = 4e-04
Identities = 31/235 (13%), Positives = 68/235 (28%), Gaps = 44/235 (18%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
K V+I G G TA+ + +G V I S + +
Sbjct: 6 KTVIITGSSNGIGRTTAILFAQEGANVTITGR-------------SSERLEETRQIILK- 51
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFE-----PDAVVH-FGEQRSAPY--SMIDRSRA 198
++ K + + D+ + + S D +V+ G + + D+
Sbjct: 52 SGVSEKQVNSVVADVTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGID 111
Query: 199 VFTQH--NNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDT 256
++ + N+ + + +K G I +
Sbjct: 112 IYHKTLKLNLQAVIEMTKKVKPHLVASK-------------------GEIVNVSSIVAGP 152
Query: 257 LPYPKQASSFYHLSKVHD-SHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEE 310
P + + + + A +GIR ++ G+V T+ M ++
Sbjct: 153 QAQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNAMGMPDQ 207
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (91), Expect = 5e-04
Identities = 38/230 (16%), Positives = 62/230 (26%), Gaps = 52/230 (22%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
+RV++ G G T L G V V Q LDSL
Sbjct: 8 RRVLVTGAGKGIGRGTVQALHATGARVVAVS-------RTQADLDSL------------- 47
Query: 147 KSLTGKNIELYIGDICDFEFLSESFKSFEP-DAVVH-FGEQRSAPYSMIDRSRAVFTQHN 204
IE D+ D+E + S P D +V+ P+ + + +
Sbjct: 48 -VRECPGIEPVCVDLGDWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEV 106
Query: 205 NVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS 264
N+ + V + +N + +
Sbjct: 107 NLRAVIQVSQIVARGLIARG------------------VPGAIVNVSSQCSQRAVTNH-- 146
Query: 265 SFYHLSK---VHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEEL 311
S Y +K + +A IR +N VV T+M +
Sbjct: 147 SVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVV------MTSMGQAT 190
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 0.001
Identities = 12/43 (27%), Positives = 16/43 (37%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQ 127
K++ I G G G T GYEV ++ RL
Sbjct: 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEG 44
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 297 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.5 bits (89), Expect = 0.001
Identities = 40/221 (18%), Positives = 68/221 (30%), Gaps = 39/221 (17%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
+ + ++ GG G A L G V I L + S D L+
Sbjct: 11 QGQVAIVTGGATGIGKAIVKELLELGSNVVIASR-------------KLERLKSAADELQ 57
Query: 145 C-WKSLTGKNIELYIGDICDFEFLSESFKSFEPD------AVVHFGEQRSAPYSMIDRSR 197
+ +I + E ++ KS V + G Q +P I
Sbjct: 58 ANLPPTKQARVIPIQCNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKG 117
Query: 198 AVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTL 257
N+ GT + A+ + H G + + G+ H+G
Sbjct: 118 WHAVLETNLTGTFYMCKAVYSSWMKEH------GGSIVNIIVPTKAGFPLAVHSGAA--- 168
Query: 258 PYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVY 298
+ Y+L+K ++A GIR + GV+Y
Sbjct: 169 ---RAG--VYNLTK-----SLALEWACSGIRINCVAPGVIY 199
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.9 bits (87), Expect = 0.001
Identities = 14/142 (9%), Positives = 38/142 (26%), Gaps = 22/142 (15%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
+A+RV++ GG G G + + VA +D + + + D++
Sbjct: 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEEASASVIVKMTDSFTEQADQV- 59
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVF--TQ 202
+ + + DA++ + +
Sbjct: 60 -------------------TAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMW 100
Query: 203 HNNVIGTLNVLFAMKEFRQECH 224
++ + + +E
Sbjct: 101 KQSIWTSTISSHLATKHLKEGG 122
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 38.7 bits (88), Expect = 0.001
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118
AKRV +IG G G A A L G V + ++
Sbjct: 1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEA 32
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Score = 37.9 bits (87), Expect = 0.002
Identities = 39/241 (16%), Positives = 57/241 (23%), Gaps = 42/241 (17%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
K +I G G A A +G VAI D L + R
Sbjct: 4 DGKTALITGSARGIGRAFAEAYVREGARVAIAD---INL-----------------EAAR 43
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESFKSFEPD------AVVHFGEQRSAPYSMIDRSRA 198
+ G D+ D + V + AP I R
Sbjct: 44 ATAAEIGPAACAIALDVTDQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESY 103
Query: 199 VFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLP 258
NV GTL ++ A+ I G
Sbjct: 104 DRLFAINVSGTLFMMQAVARAMIAGG------------RGGKIINMASQAGRRGEALVGV 151
Query: 259 YPKQASSFYHLSKV----HDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNR 314
Y ++ L++ H I A G+ + GV E E +
Sbjct: 152 YCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVDAKFADYENLPRGEKKRQ 211
Query: 315 L 315
+
Sbjct: 212 V 212
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (87), Expect = 0.002
Identities = 38/238 (15%), Positives = 70/238 (29%), Gaps = 49/238 (20%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
+ + ++ G G G A A L +G +V ++ I + +
Sbjct: 9 RDRLALVTGASGGIGAAVARALVQQGLKVVGCAR-------------TVGNIEELAAECK 55
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESFKSFE-----PDAVVHF-GEQRSAPYSMIDRSRA 198
+ + Y D+ + E + F + D ++ G R S
Sbjct: 56 --SAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGW 113
Query: 199 VFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLP 258
+ NV+ + + + G+I IN N +
Sbjct: 114 KDMFNVNVLALSICTREAYQ-----SMKERNVDD-----------GHI-ININSMSGHRV 156
Query: 259 YPKQASSFYHLSK---VHDSHNIA--FTCKAWGIRATDLNQGVVYGVRTDETAMHEEL 311
P + FY +K + + IRAT ++ GVV ET +L
Sbjct: 157 LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVV------ETQFAFKL 208
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Score = 37.9 bits (87), Expect = 0.002
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118
K+K+++I+G G+ G L+ KG++V I+D
Sbjct: 1 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQ 33
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Score = 37.4 bits (86), Expect = 0.002
Identities = 34/233 (14%), Positives = 69/233 (29%), Gaps = 37/233 (15%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
K +++ GG+ G A ++ G VA++ R D + +
Sbjct: 8 VNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIY---RSAADAVEVTEKV----------- 53
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESF----KSFEPDAVVHFGEQRSAPYSMIDRSRAVF 200
G + Y D+ + + ++++ P + + S + + F
Sbjct: 54 --GKEFGVKTKAYQCDVSNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDF 111
Query: 201 TQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYP 260
+V + + G+ + IN +
Sbjct: 112 AFVYDVNVFGVFNTCRAVAKLWLQ------KQQKGSIVVTSSMSSQIINQSS-----LNG 160
Query: 261 KQASSFYHLSK---VHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEE 310
FY+ SK + +A + GIR N V TD+TA ++
Sbjct: 161 SLTQVFYNSSKAACSNLVKGLAAEWASAGIRV---NALSPGYVNTDQTAHMDK 210
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Score = 37.5 bits (85), Expect = 0.002
Identities = 28/235 (11%), Positives = 51/235 (21%), Gaps = 60/235 (25%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK 147
+++I G +G G L K EV D
Sbjct: 3 KILITGANGQLGREIQKQLKGKNVEVIPTD------------------------------ 32
Query: 148 SLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVI 207
+ DI + +++ F +P+ V++ + N I
Sbjct: 33 --------VQDLDITNVLAVNKFFNEKKPNVVINCAAHTAVDKCEEQYD---LAYKINAI 81
Query: 208 GTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFY 267
G N+ A E + + + E +
Sbjct: 82 GPKNLAAAAYSVGAEIVQISTDYVFDGEAKEPITEFDEVNPQSA---------------- 125
Query: 268 HLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322
KA + + +YG + L D V
Sbjct: 126 ---YGKTKLEGENFVKALNPKYYIVRTAWLYGDGNNFVKTMINLGKTHDELKVVH 177
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Score = 37.4 bits (85), Expect = 0.002
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVD 117
++IGG G G A A +L+ + A+ +
Sbjct: 6 EAVVIGG-GIIGSAIAYYLAKENKNTALFE 34
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Score = 37.4 bits (85), Expect = 0.003
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 89 VMIIGGDGYCGWATALHLSNKGYEVAIVD 117
V+++G G G A L+ +G + +VD
Sbjct: 6 VIVVGA-GSMGMAAGYQLAKQGVKTLLVD 33
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Score = 37.1 bits (85), Expect = 0.003
Identities = 33/230 (14%), Positives = 56/230 (24%), Gaps = 39/230 (16%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
K K ++ G G A L+ +G ++ + A I
Sbjct: 3 KGKVAVVTGSTSGIGLGIATALAAQGADIVLNG---------------FGDAAEIEKVRA 47
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHN 204
+ G + D+ +AV + ID V
Sbjct: 48 GLAAQHGVKVLYDGADLSK------------GEAVRGLVDNAVRQMGRIDIL--VNNAGI 93
Query: 205 NVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQAS 264
+ K + G ++G+ I N +
Sbjct: 94 QHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFGRI-INIASAHGLVASANK 152
Query: 265 SFYHLSK---VHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEEL 311
S Y +K V + A GI A + G V T + E+
Sbjct: 153 SAYVAAKHGVVGFTKVTALETAGQGITANAICPGWV------RTPLVEKQ 196
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.8 bits (85), Expect = 0.003
Identities = 44/289 (15%), Positives = 75/289 (25%), Gaps = 66/289 (22%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
K V++ GG G N G V I D + R
Sbjct: 5 AGKVVVVTGGGRGIGAGIVRAFVNSGARVVICD---KD-----------------ESGGR 44
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESFKSFE-----PDAVVHFGEQRSAPYSMIDRSRAV 199
+ + D+ + + D VV+ P + S
Sbjct: 45 ALEQ-ELPGAVFILCDVTQEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQG 103
Query: 200 FTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPY 259
F Q + N+L + ++ + IN + +
Sbjct: 104 FRQLLEL----NLLGTYTLTKLALPYLR--------------KSQGNVINISSLVGAIGQ 145
Query: 260 PKQASSFYHLSK---VHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLD 316
+ Y +K + +A +G+R ++ G ++ +E A
Sbjct: 146 AQAVP--YVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLWEELAALMPDPRASI 203
Query: 317 YDGVFGTALNRFC----VQAAV-----------GHPLTVYGKGGQTRGY 350
+G+ L R V AA G L V GG GY
Sbjct: 204 REGMLAQPLGRMGQPAEVGAAAVFLASEANFCTGIELLV--TGGAELGY 250
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 37.0 bits (84), Expect = 0.003
Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 1/60 (1%)
Query: 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146
R+ ++GG G AL L + G +V + + + L G+ +
Sbjct: 5 DRIAVVGG-SISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVE 63
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Score = 36.6 bits (84), Expect = 0.004
Identities = 41/250 (16%), Positives = 67/250 (26%), Gaps = 41/250 (16%)
Query: 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLR 144
+ K +I GG G G TA G +V I D + + +
Sbjct: 5 QDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHG-------------QKVCNNIG 51
Query: 145 CWKSLTGKNIELYIGDICDFEFLSESFKSFE-----PDAVVHFGE-QRSAPYSMIDRSRA 198
+ I D+ E + + D + + PYS+++
Sbjct: 52 -----SPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNE 106
Query: 199 VF--TQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDT 256
F NV G F H ++ + G+ T G +
Sbjct: 107 DFKRVMDINVYGA---------FLVAKHAARVMIPAKKGSIVFTASISSFTAGE-GVSHV 156
Query: 257 LPYPKQA--SSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNR 314
K A L + I C + I A+ L V D + + E
Sbjct: 157 YTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDV---FGVDSSRVEELAHQA 213
Query: 315 LDYDGVFGTA 324
+ G A
Sbjct: 214 ANLKGTLLRA 223
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 479 | |||
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 100.0 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 100.0 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 100.0 | |
| d1udca_ | 338 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1kewa_ | 361 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1r6da_ | 322 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces | 100.0 | |
| d1sb8a_ | 341 | UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomo | 100.0 | |
| d1ek6a_ | 346 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d2blla1 | 342 | Polymyxin resistance protein ArnA (PrmI) {Escheric | 100.0 | |
| d1t2aa_ | 347 | GDP-mannose 4,6-dehydratase {Human (Homo sapiens) | 100.0 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 100.0 | |
| d1oc2a_ | 346 | dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus | 100.0 | |
| d1rpna_ | 321 | GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos | 100.0 | |
| d1z45a2 | 347 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1n7ha_ | 339 | GDP-mannose 4,6-dehydratase {Thale-cress (Arabidop | 100.0 | |
| d1gy8a_ | 383 | Uridine diphosphogalactose-4-epimerase (UDP-galact | 100.0 | |
| d1e6ua_ | 315 | GDP-4-keto-6-deoxy-d-mannose epimerase/reductase ( | 100.0 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 100.0 | |
| d1rkxa_ | 356 | CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc | 100.0 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 100.0 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 100.0 | |
| d1eq2a_ | 307 | ADP-L-glycero-D-mannoheptose 6-epimerase {Escheric | 100.0 | |
| d1n2sa_ | 298 | dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {S | 99.98 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 99.95 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 99.95 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 99.94 | |
| d2bkaa1 | 232 | TAT-interacting protein TIP30 {Human (Homo sapiens | 99.94 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 99.92 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 99.91 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 99.91 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 99.91 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 99.91 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 99.91 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 99.9 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 99.9 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 99.9 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 99.9 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 99.9 | |
| d2a35a1 | 212 | Hypothetical protein PA4017 {Pseudomonas aeruginos | 99.9 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 99.9 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 99.9 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 99.9 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 99.9 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 99.9 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 99.9 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 99.9 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.89 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 99.89 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 99.88 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 99.88 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 99.88 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 99.88 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 99.88 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 99.88 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 99.88 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 99.88 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 99.88 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 99.88 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 99.87 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 99.87 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 99.87 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 99.87 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 99.86 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 99.86 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 99.86 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 99.86 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 99.86 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 99.86 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 99.85 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 99.85 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 99.85 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 99.85 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 99.85 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 99.84 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 99.84 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 99.83 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 99.82 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 99.82 | |
| d2fr1a1 | 259 | Erythromycin synthase, eryAI, 1st ketoreductase mo | 99.81 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 99.8 | |
| d1jtva_ | 285 | Human estrogenic 17beta-hydroxysteroid dehydrogena | 99.8 | |
| d1snya_ | 248 | Carbonyl reductase sniffer {Fruit fly (Drosophila | 99.8 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 99.8 | |
| d1dhra_ | 236 | Dihydropteridin reductase (pteridine reductase) {R | 99.77 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 99.77 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 99.75 | |
| d1e7wa_ | 284 | Dihydropteridin reductase (pteridine reductase) {L | 99.74 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 99.74 | |
| d1ooea_ | 235 | Dihydropteridin reductase (pteridine reductase) {N | 99.73 | |
| d1uaya_ | 241 | Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t | 99.72 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 99.71 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 99.67 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 99.66 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 99.65 | |
| d1uh5a_ | 329 | Enoyl-ACP reductase {Malaria parasite (Plasmodium | 99.61 | |
| d1fjha_ | 257 | 3-alpha-hydroxysteroid dehydrogenase {Comamonas te | 99.5 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 99.22 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 98.25 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 98.22 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 98.03 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 98.01 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 97.91 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 97.9 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.89 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 97.86 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 97.79 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 97.73 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 97.6 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 97.56 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 97.55 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 97.5 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 97.49 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 97.48 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 97.48 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 97.48 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 97.47 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.41 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 97.36 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 97.36 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 97.35 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 97.32 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 97.28 | |
| d1y7ta1 | 154 | Malate dehydrogenase {Thermus thermophilus [TaxId: | 97.27 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 97.25 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 97.22 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 97.21 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 97.17 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.17 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 97.13 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.05 | |
| d1u7za_ | 223 | Coenzyme A biosynthesis bifunctional protein CoaBC | 97.02 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 97.0 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 96.93 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.93 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 96.91 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.85 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.83 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.8 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.76 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 96.76 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.46 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 96.44 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 96.43 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 96.38 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 96.36 | |
| d1o8ca2 | 77 | Hypothetical protein YhdH {Escherichia coli [TaxId | 96.34 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 96.34 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 96.25 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 96.13 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 96.12 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.1 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.02 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 96.02 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.0 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 95.99 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 95.96 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 95.94 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 95.94 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 95.74 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 95.7 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 95.66 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 95.66 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.62 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 95.58 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 95.53 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.5 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 95.48 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 95.46 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 95.41 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.38 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.37 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 95.3 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 95.26 | |
| d1yovb1 | 426 | UBA3 {Human (Homo sapiens) [TaxId: 9606]} | 95.23 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 95.2 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 95.18 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 95.14 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 95.11 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 95.11 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 95.08 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.06 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 95.04 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 95.03 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 95.03 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 95.0 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 94.93 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 94.91 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 94.87 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 94.84 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 94.83 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 94.82 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.72 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.71 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 94.7 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.68 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 94.66 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 94.62 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 94.59 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 94.53 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 94.52 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 94.48 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 94.45 | |
| d1yova1 | 529 | Amyloid beta precursor protein-binding protein 1, | 94.34 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 94.34 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 94.3 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 94.27 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 94.26 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 94.22 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 94.18 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 94.12 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 93.97 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 93.94 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 93.94 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 93.92 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 93.91 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 93.82 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 93.8 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 93.8 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 93.69 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 93.59 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 93.58 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 93.54 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 93.52 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 93.45 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 93.38 | |
| d1gsoa2 | 105 | Glycinamide ribonucleotide synthetase (GAR-syn), N | 93.27 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 93.25 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 93.16 | |
| d1r0ka2 | 150 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Z | 93.11 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 93.1 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 93.08 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 93.07 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 92.55 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 92.51 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 91.99 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 91.98 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 91.95 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 91.93 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 91.92 | |
| d1q0qa2 | 151 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase {E | 91.9 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 91.84 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 91.68 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 91.68 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.66 | |
| d1p9oa_ | 290 | Phosphopantothenoylcysteine synthetase {Human (Hom | 91.63 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 91.48 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 91.39 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 91.38 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 91.19 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 90.77 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 90.74 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 90.73 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 90.62 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 90.56 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 90.47 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 90.37 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 90.35 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 90.06 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 89.71 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 89.7 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 89.54 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 89.36 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 89.18 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 88.98 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 88.91 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 88.84 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 88.79 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 88.37 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 88.21 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 88.1 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 87.75 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 87.75 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 87.42 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 87.42 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 87.34 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 87.07 | |
| d2blna2 | 203 | Polymyxin resistance protein ArnA, N-terminal doma | 87.04 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 85.87 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 85.68 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 85.49 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 85.4 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 85.24 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 85.09 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 85.05 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 84.48 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 83.68 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 83.25 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 82.63 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 81.41 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 81.34 | |
| d1u0sy_ | 118 | CheY protein {Thermotoga maritima [TaxId: 2336]} | 81.19 | |
| d2csua3 | 163 | Acetate-CoA ligase alpha chain, AcdA, domains 2 an | 80.63 | |
| d3bula2 | 156 | Methionine synthase, C-terminal domain {Escherichi | 80.62 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 80.46 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 80.18 |
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=5.2e-57 Score=453.22 Aligned_cols=393 Identities=88% Similarity=1.401 Sum_probs=349.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
||+|||||||||||++|+++|++.||+|+++|...+...+...+...+.+.....+....+....+.+++++.+||+|.+
T Consensus 1 g~kILVTGatGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Dl~d~~ 80 (393)
T d1i24a_ 1 GSRVMVIGGDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTGKSIELYVGDICDFE 80 (393)
T ss_dssp -CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHCCCCEEEESCTTSHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcCCCcEEEEccCCCHH
Confidence 68999999999999999999999999999999887776666667777778878888888888877889999999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCc
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGY 245 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~ 245 (479)
.++++++..++|+|||+||......+..++.....++.+|+.||.+++++|++.+.+.+|++.||..+|+....+..|.+
T Consensus 81 ~l~~~~~~~~~d~ViHlAa~~~~~~s~~~~~~~~~~~~~Nv~gt~nll~~~~~~~~~~~~i~~ss~~~~~~~~~~~~~~~ 160 (393)
T d1i24a_ 81 FLAESFKSFEPDSVVHFGEQRSAPYSMIDRSRAVYTQHNNVIGTLNVLFAIKEFGEECHLVKLGTMGEYGTPNIDIEEGY 160 (393)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEEECCGGGGCCCSSCBCSSE
T ss_pred HHHHHHHhhcchheeccccccccccccccccccccccccccccccHHHHHHHHhccccceeecccccccccccccccccc
Confidence 99999998889999999998776666666555566789999999999999999998868899999999998877777777
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
....+.+.+++.+.+..|.+.|+.+|.++|.++..++++++++++++||++||||+.++...+..+..+..+.+.++.++
T Consensus 161 ~~~~~~~~~~~~~~~~~p~~~Y~~sK~~aE~~~~~~~~~~~l~~~~lR~~~v~G~~~~~~~~~~~~~~~~~~~~~~~~~i 240 (393)
T d1i24a_ 161 ITITHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVKTDETEMHEELRNRLDYDAVFGTAL 240 (393)
T ss_dssp EEEEETTEEEEEECCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECSCCTTGGGSGGGCCCCCCSTTTCCHH
T ss_pred ccccccccccccccccccccHHHHHhhhhcccccccccccceeeeecccccccCCCccccccccccccccccccccccch
Confidence 77776666666677888899999999999999999999999999999999999999988887888888888999999999
Q ss_pred HHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCCcCHHHHHHHHHHHhhhcCCccee
Q 011707 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQFSVNQLAALVTKAGEKLGLDVKT 405 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~~s~~el~~~i~~~~~~~g~~~~~ 405 (479)
..++.+...++++.+++++.+.|||+||+|++++++.++++....++..++|.+++.+|+.|+++.+.+.....+..++.
T Consensus 241 ~~~~~~~~~~~~~~i~g~~~~~rd~v~v~D~~~a~~~~~~~~~~~g~~~~~~~~~~~~si~el~~~i~~~~~~~~~~~~~ 320 (393)
T d1i24a_ 241 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVEIAIANPAKAGEFRVFNQFTEQFSVNELASLVTKAGSKLGLDVKK 320 (393)
T ss_dssp HHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHSCCCTTCEEEEEECSEEEEHHHHHHHHHHHHHTTTCCCCE
T ss_pred hhhhHHhhcCCeeEEeeecccccccccccchHHHHHHHHHhhcccceeeeecCCCCeeEHHHHHHHHHHHHHhhCCCcce
Confidence 99999999999999999999999999999999999999999888777455666667799999999999987777888887
Q ss_pred eecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHhcccCCcCCCCCcceecccccCCcccc
Q 011707 406 ISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQFKDRVDSKQIMPSVSWRKIGTKPKTVA 478 (479)
Q Consensus 406 ~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (479)
...+.++......++..|++++++|||+|+++++++++++++|+++|+++.+.+.+.|.++|+|+++.-||+.
T Consensus 321 ~~~~~~~~~~~~~~~~~d~~k~~~LGw~P~~~~~~~i~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (393)
T d1i24a_ 321 MTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSLLDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSMT 393 (393)
T ss_dssp EEECCSSCSCSSCCCCBCCCHHHHTTCCCCCCCHHHHHHHHHHHHHTGGGCCGGGSSCCCCTTTCCSSCCCC-
T ss_pred eeccCCCCCCCccEecCCHHHHHHcCCccccCHHHHHHHHHHHHHHHHHhhhHhhcCCCCCCcccchhhcccC
Confidence 7777766666777778999999999999999999999999999999999999999999999999999999974
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-47 Score=378.16 Aligned_cols=317 Identities=22% Similarity=0.219 Sum_probs=241.3
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||||||||++|+++|++.|++|+++||........ ++ +.+.........+++++.+|++|.++
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~Dl~d~~~ 69 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRASSFNTE-----RV-------DHIYQDPHTCNPKFHLHYGDLSDTSN 69 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC---------------------------------CCEEECCCCSSCHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCCcccchh-----hH-------HHHHhhhhhcCCCeEEEEeecCCHHH
Confidence 7899999999999999999999999999999865321110 00 00001111233589999999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCc--ceEEEeeccccccCCCC-CCcC
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQE--CHLVKLGTMGEYGTPNI-DIEE 243 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~--~~~V~~SS~~v~g~~~~-~~~e 243 (479)
++++++...+|+|||+||..+...+..++ ..++++|+.||.||+++|++.+.+ .+|||+||+.|||.+.. +++|
T Consensus 70 ~~~~~~~~~~d~v~h~aa~~~~~~~~~~~---~~~~~~Nv~gt~nllea~~~~~~~~~~r~i~~SS~~vYG~~~~~~~~E 146 (357)
T d1db3a_ 70 LTRILREVQPDEVYNLGAMSHVAVSFESP---EYTADVDAMGTLRLLEAIRFLGLEKKTRFYQASTSELYGLVQEIPQKE 146 (357)
T ss_dssp HHHHHHHHCCSEEEECCCCCTTTTTTSCH---HHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGGTTCCSSSBCT
T ss_pred HHHHHhccCCCEEEEeecccccchhhhCH---HHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEchhhhCCCCCCCcCC
Confidence 99999988899999999998777666665 557899999999999999997654 27999999999997654 6677
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
+ .+..|.+.|+.||+++|.+++.+++.++++++++||++||||+..+... ..
T Consensus 147 ~--------------~~~~P~~~Y~~sK~~~E~~~~~~~~~~~l~~~ilR~~~vyGp~~~~~~~--------------~~ 198 (357)
T d1db3a_ 147 T--------------TPFYPRSPYAVAKLYAYWITVNYRESYGMYACNGILFNHESPRRGETFV--------------TR 198 (357)
T ss_dssp T--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSH--------------HH
T ss_pred C--------------CCCCCCChHHHHHHHHHHHHHHHHHHhCCCEEEEEeccccCCCCCcCCC--------------ch
Confidence 6 3556789999999999999999999999999999999999997544321 23
Q ss_pred hHHHHHHHHhcCC-CeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCC
Q 011707 324 ALNRFCVQAAVGH-PLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 324 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~ 401 (479)
.+..++.++..++ ...+++++++.++|+||+|++++++.++++.. ++ +|||++ +.+|+.|+++.+.+. +|.
T Consensus 199 ~i~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~D~~~a~~~~~~~~~--~~--~yni~sg~~~s~~~~~~~~~~~---~g~ 271 (357)
T d1db3a_ 199 KITRAIANIAQGLESCLYLGNMDSLRDWGHAKDYVKMQWMMLQQEQ--PE--DFVIATGVQYSVRQFVEMAAAQ---LGI 271 (357)
T ss_dssp HHHHHHHHHHTTSCCCEEESCTTCEECCEEHHHHHHHHHHTTSSSS--CC--CEEECCCCCEEHHHHHHHHHHT---TTE
T ss_pred HHHHHHHHHHhCCCceEEECCCCeeecceeechHHHHHHHHHhCCC--CC--eEEECCCCceehHHHHHHHHHH---hCC
Confidence 4455666666665 45667889999999999999999999998643 34 899998 679999999999998 665
Q ss_pred cceeeecCCC----------------C-------------cccccccccCCchHHHH-cCCcccccHHHHHHHHHHH-HH
Q 011707 402 DVKTISVPNP----------------R-------------VEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNF-AI 450 (479)
Q Consensus 402 ~~~~~~~~~~----------------~-------------~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~-~~ 450 (479)
...+...+.. . .......+.+|++|+++ |||+|+++++|++++++++ ++
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~d~skakk~LGw~P~~sl~egI~~~I~~~l~ 351 (357)
T d1db3a_ 272 KLRFEGTGVEEKGIVVSVTGHDAPGVKPGDVIIAVDPRYFRPAEVETLLGDPTKAHEKLGWKPEITLREMVSEMVANDLE 351 (357)
T ss_dssp EEEEESCGGGCEEEEEEECSSSCTTCCTTCEEEEECGGGCCCCC-CCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhhcccccccccCceeEeeccccCCCccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHH
Confidence 4333211100 0 01122344579999987 9999999999999999886 44
Q ss_pred Hhc
Q 011707 451 QFK 453 (479)
Q Consensus 451 ~~~ 453 (479)
+.|
T Consensus 352 ~~k 354 (357)
T d1db3a_ 352 AAK 354 (357)
T ss_dssp HHH
T ss_pred HHh
Confidence 433
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1e-47 Score=373.07 Aligned_cols=306 Identities=24% Similarity=0.337 Sum_probs=245.1
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.|+||||||+||||++|+++|+++|++|+++|+........ ...+ .....+.....|+.
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~----------------~~~~--~~~~~~d~~~~~~~--- 59 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRN----------------VEHW--IGHENFELINHDVV--- 59 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCGGG----------------TGGG--TTCTTEEEEECCTT---
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeCCCcCCHHH----------------HHHh--cCCCceEEEehHHH---
Confidence 47999999999999999999999999999999754322110 0011 11234555555554
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEG 244 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~ 244 (479)
+.++. ++|+|||+|+.........++ ...+++|+.|+.+|+++|++.+ ++|||+||++|||.+.. +..|+
T Consensus 60 --~~~~~--~~d~VihlAa~~~~~~~~~~~---~~~~~~Nv~g~~~ll~~~~~~~--~k~I~~SS~~vy~~~~~~~~~e~ 130 (312)
T d2b69a1 60 --EPLYI--EVDQIYHLASPASPPNYMYNP---IKTLKTNTIGTLNMLGLAKRVG--ARLLLASTSEVYGDPEVHPQSED 130 (312)
T ss_dssp --SCCCC--CCSEEEECCSCCSHHHHTTCH---HHHHHHHHHHHHHHHHHHHHHT--CEEEEEEEGGGGBSCSSSSBCTT
T ss_pred --HHHHc--CCCEEEECcccCCchhHHhCH---HHHHHHHHHHHHHHHHHHHHcC--CcEEEEEChheecCCCCCCCCcc
Confidence 33454 799999999987654444443 5678999999999999999987 47999999999998765 56665
Q ss_pred ceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccch
Q 011707 245 YITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~ 324 (479)
.+... .|..|.+.|+.+|.++|.+++.+++.+|++++++||++||||+++... +.+
T Consensus 131 ~~~~~---------~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~~~---------------~~~ 186 (312)
T d2b69a1 131 YWGHV---------NPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMND---------------GRV 186 (312)
T ss_dssp CCCBC---------CSSSTTHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTCCTTC---------------CCH
T ss_pred ccCCC---------CCCCCccHHHHHHHHHHHHHHHHHHHhCCcEEEEEeeeEECCCCCCCC---------------ccH
Confidence 43221 255678999999999999999999999999999999999999875431 356
Q ss_pred HHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCcc
Q 011707 325 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDV 403 (479)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~ 403 (479)
++.++.+++.|+++.+++++.+.++|+|++|++++++.++++.. ++ +||+++ +.+++.|+++.+++. +|.+.
T Consensus 187 i~~~i~~~~~g~~i~i~~~g~~~r~~i~v~D~~~~~~~~~~~~~--~~--~~n~~~~~~~~~~~~~~~i~~~---~~~~~ 259 (312)
T d2b69a1 187 VSNFILQALQGEPLTVYGSGSQTRAFQYVSDLVNGLVALMNSNV--SS--PVNLGNPEEHTILEFAQLIKNL---VGSGS 259 (312)
T ss_dssp HHHHHHHHHHTCCEEEESSSCCEEECEEHHHHHHHHHHHHTSSC--CS--CEEESCCCEEEHHHHHHHHHHH---HTCCC
T ss_pred HHHHHHHHHcCCCeEEeCCCCeeEccEEHHHHHHHHHHHHhhcc--CC--ceEecCCcccchhhHHHHHHHH---hCCCC
Confidence 88999999999999999999999999999999999999987643 33 799999 679999999999998 88887
Q ss_pred eeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 404 KTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
++...+.... ....+.+|++|+++ |||+|+++++++++++++|++...+
T Consensus 260 ~~~~~~~~~~--~~~~~~~d~~k~~~~lgw~p~~~l~~~I~~~i~w~~~~~~ 309 (312)
T d2b69a1 260 EIQFLSEAQD--DPQKRKPDIKKAKLMLGWEPVVPLEEGLNKAIHYFRKELE 309 (312)
T ss_dssp CEEEECCCTT--CCCCCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHH
T ss_pred ceEECCCCCC--CCCeeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 7777765433 33456789999977 9999999999999999999976544
|
| >d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.1e-46 Score=365.92 Aligned_cols=326 Identities=21% Similarity=0.232 Sum_probs=257.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||||||||++|+++|+++|++|+++|+...+..+ ...........++.++++|++|.+.
T Consensus 1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~----------------~~~~~~~~~~~~~~~~~~Dl~d~~~ 64 (338)
T d1udca_ 1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDNLCNSKRS----------------VLPVIERLGGKHPTFVEGDIRNEAL 64 (338)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTT----------------HHHHHHHHHTSCCEEEECCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcchh----------------hHHHHHhhcCCCCEEEEeecCCHHH
Confidence 579999999999999999999999999999986553221 1112222334689999999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGY 245 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~ 245 (479)
+.++++..++|+|||+||....+....++ ..++++|+.|+.++|++|++.+++ +||++||..+|+.... +..|..
T Consensus 65 l~~~~~~~~~d~ViHlAa~~~~~~~~~~~---~~~~~~Nv~gt~nlL~~~~~~~v~-~~i~~Ss~~vy~~~~~~~~~e~~ 140 (338)
T d1udca_ 65 MTEILHDHAIDTVIHFAGLKAVGESVQKP---LEYYDNNVNGTLRLISAMRAANVK-NFIFSSSATVYGDQPKIPYVESF 140 (338)
T ss_dssp HHHHHHHTTCSEEEECCSCCCHHHHHHCH---HHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCSCCSSSBCTTS
T ss_pred HHHHHhccCCCEEEECCCccchhhHHhCH---HHHHHhHHHHHHHHHHHHHHhCCC-EEEecCcceEEcccccccccccc
Confidence 99999988899999999976655555554 467899999999999999999988 9999999999987654 333321
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH-hCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccch
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA-WGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~ 324 (479)
.+..|.+.|+.+|.++|.++..+... .+++++++||++||||+..... ...+.+....+
T Consensus 141 -------------~~~~p~~~Y~~sK~~~e~~~~~~~~~~~~~~~~ilR~~~v~G~~~~~~~-------~~~~~~~~~~l 200 (338)
T d1udca_ 141 -------------PTGTPQSPYGKSKLMVEQILTDLQKAQPDWSIALLRYFNPVGAHPSGDM-------GEDPQGIPNNL 200 (338)
T ss_dssp -------------CCCCCSSHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECEEECCCTTSSS-------CCCCCSSCCSH
T ss_pred -------------ccCCCcchHHHHHhhhhHHHHHHHhhccCCeEEEEeeccEEeccCCCCC-------CCCccccHHHH
Confidence 23467899999999999999977766 4899999999999999754321 01122333345
Q ss_pred HHHHHHHHhcC-CCeEEecC------CCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHh
Q 011707 325 LNRFCVQAAVG-HPLTVYGK------GGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAG 396 (479)
Q Consensus 325 ~~~~~~~~~~~-~~~~~~~~------~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~ 396 (479)
+..++..+..+ .++.++++ +.+.+||+|++|++.++..++......+...+||+++ ..+|+.|+++.+.+.
T Consensus 201 ~~~~~~~~~~~~~~i~i~g~~~~~~~g~~~rd~i~v~D~~~~~~~~~~~~~~~~~~~i~Ni~~~~~~si~e~~~~i~~~- 279 (338)
T d1udca_ 201 MPYIAQVAVGRRDSLAIFGNDYPTEDGTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKA- 279 (338)
T ss_dssp HHHHHHHHTTSSSCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHTTCCEEEEEEESCSSCEEHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCCCCEEEeCCCcccCCCCceeeEEEEeehhhhccccccccccccCcceeeecCCCCCcHHHHHHHHHHH-
Confidence 55666655543 47777764 6788999999999999988887555544456999999 679999999999998
Q ss_pred hhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcccCC
Q 011707 397 EKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDRVD 457 (479)
Q Consensus 397 ~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~~~ 457 (479)
+|.++++.+.+.... ....+.+|++|+++ |||+|+++++++++++++|++.+++++.
T Consensus 280 --~g~~~~~~~~~~~~~--~~~~~~~d~~k~~~~lgwkp~~~l~egi~~ti~w~~~~~~~~~ 337 (338)
T d1udca_ 280 --CGKPVNYHFAPRREG--DLPAYWADASKADRELNWRVTRTLDEMAQDTWHWQSRHPQGYP 337 (338)
T ss_dssp --HTSCCCEEEECCCTT--CCSBCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHCTTCSC
T ss_pred --HCCCCceEECCCCCC--CCCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHhchhhCC
Confidence 888888887775433 33456789999987 9999999999999999999999988764
|
| >d1kewa_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=6.9e-47 Score=374.55 Aligned_cols=325 Identities=20% Similarity=0.296 Sum_probs=253.0
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCe-EEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYE-VAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~-V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
|+|||||||||||++|+++|++.|++ |+++|+....... +....+ ....+++++.+|++|.+
T Consensus 1 MkILItG~tGfIGs~l~~~L~~~g~~vv~~~d~~~~~~~~---------------~~~~~~--~~~~~~~~~~~Dl~d~~ 63 (361)
T d1kewa_ 1 MKILITGGAGFIGSAVVRHIIKNTQDTVVNIDKLTYAGNL---------------ESLSDI--SESNRYNFEHADICDSA 63 (361)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHHCSCEEEEEECCCTTCCG---------------GGGTTT--TTCTTEEEEECCTTCHH
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCccccH---------------HHHHhh--hhcCCcEEEEccCCCHH
Confidence 58999999999999999999999997 4566654332100 011111 12358999999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCc--------ceEEEeeccccccCC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQE--------CHLVKLGTMGEYGTP 237 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~--------~~~V~~SS~~v~g~~ 237 (479)
.+..+++..++|+|||+||..+...+..+| ..++++|+.|+.+++++|++.++. ++|||+||..|||..
T Consensus 64 ~l~~~~~~~~~d~VihlAa~~~~~~~~~~p---~~~~~~N~~gt~nl~~~~~~~~~~~~~~~~~~~~~i~~SS~~vyg~~ 140 (361)
T d1kewa_ 64 EITRIFEQYQPDAVMHLAAESHVDRSITGP---AAFIETNIVGTYALLEVARKYWSALGEDKKNNFRFHHISTDEVYGDL 140 (361)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHHHCT---HHHHHHHTHHHHHHHHHHHHHHHTSCHHHHHHCEEEEEEEGGGGCCC
T ss_pred HHHHHHHhCCCCEEEECccccchhhHHhCH---HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCceEEEEeccceeeCCC
Confidence 999999987899999999987666655555 567899999999999999876421 289999999999986
Q ss_pred CC-CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccC
Q 011707 238 NI-DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLD 316 (479)
Q Consensus 238 ~~-~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~ 316 (479)
.. +..|...... ...+ ..+..|.+.|+.+|.++|.++..+++.++++++++||++||||++..
T Consensus 141 ~~~~~~~~~~~~~--~~~e--~~~~~p~s~Yg~sK~~~E~~~~~~~~~~~i~~~~lR~~~vyGp~~~~------------ 204 (361)
T d1kewa_ 141 PHPDEVENSVTLP--LFTE--TTAYAPSSPYSASKASSDHLVRAWRRTYGLPTIVTNCSNNYGPYHFP------------ 204 (361)
T ss_dssp CCGGGSCTTSCCC--CBCT--TSCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEESTTCCT------------
T ss_pred ccCCccccccCCC--Cccc--CCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecCceECcCCCc------------
Confidence 64 2222211100 0001 13456789999999999999999999999999999999999998654
Q ss_pred CCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHH
Q 011707 317 YDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKA 395 (479)
Q Consensus 317 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~ 395 (479)
..+++.++.++..|+++.++++|++.|+|+||+|+|+++..++++... ++ +|||++ .++++.|+++.+.+.
T Consensus 205 -----~~~i~~~i~~~~~g~~~~v~g~g~~~r~~i~v~D~a~ai~~~~~~~~~-~~--~~Ni~s~~~~s~~~~~~~i~~~ 276 (361)
T d1kewa_ 205 -----EKLIPLVILNALEGKPLPIYGKGDQIRDWLYVEDHARALHMVVTEGKA-GE--TYNIGGHNEKKNLDVVFTICDL 276 (361)
T ss_dssp -----TSHHHHHHHHHHHTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCCT-TC--EEEECCCCEEEHHHHHHHHHHH
T ss_pred -----CcHHHHHHHHHHcCCCcEEeCCCCeEEeCEEHHHHHHHHHHHHhcCCC-CC--eEEECCCCCcchHHHHhHhhhh
Confidence 246788999999999999999999999999999999999999998655 44 999999 579999999999886
Q ss_pred hhhc-----CCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcccCC
Q 011707 396 GEKL-----GLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDRVD 457 (479)
Q Consensus 396 ~~~~-----g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~~~ 457 (479)
+... +....+...+.. ......+.+|++|+++ |||+|+++++|+++++++|++.++++++
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~k~~~~lgw~P~~~l~e~i~~ti~w~~~n~~~~~ 342 (361)
T d1kewa_ 277 LDEIVPKATSYREQITYVADR--PGHDRRYAIDAGKISRELGWKPLETFESGIRKTVEWYLANTQWVN 342 (361)
T ss_dssp HHHHSCCSSCGGGGEEEECCC--TTCCCBCCBCCHHHHHHHCCCCSCCHHHHHHHHHHHHHHCHHHHH
T ss_pred cccccccccCcccceeecCCC--CCCCceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhHHHHH
Confidence 3221 222333333322 2234566789999987 9999999999999999999988777654
|
| >d1r6da_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptomyces venezuelae [TaxId: 54571]
Probab=100.00 E-value=4.6e-46 Score=363.06 Aligned_cols=308 Identities=20% Similarity=0.292 Sum_probs=251.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeE------EEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEV------AIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V------~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
|+|||||||||||++|++.|+++|++| +.+|+....... ...... ....+++++.+|
T Consensus 1 MkIlItG~tGfIG~~l~~~L~~~g~~v~~~~~i~~~d~~~~~~~~---------------~~~~~~--~~~~~~~~~~~d 63 (322)
T d1r6da_ 1 MRLLVTGGAGFIGSHFVRQLLAGAYPDVPADEVIVLDSLTYAGNR---------------ANLAPV--DADPRLRFVHGD 63 (322)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTSCTTSCCSEEEEEECCCTTCCG---------------GGGGGG--TTCTTEEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCCccCCceEEEEeCCCccccH---------------hHhhhh--hcCCCeEEEEec
Confidence 689999999999999999999999854 455543321110 001111 123589999999
Q ss_pred cCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-
Q 011707 161 ICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI- 239 (479)
Q Consensus 161 l~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~- 239 (479)
+.+......... .+|+|+|+|+.........++ ...+++|+.|+.+++++|++.+++ +|||+||..+||....
T Consensus 64 ~~~~~~~~~~~~--~~d~vi~~a~~~~~~~~~~~~---~~~~~~N~~gt~~ll~~~~~~~~~-~~I~~Ss~~~yg~~~~~ 137 (322)
T d1r6da_ 64 IRDAGLLARELR--GVDAIVHFAAESHVDRSIAGA---SVFTETNVQGTQTLLQCAVDAGVG-RVVHVSTNQVYGSIDSG 137 (322)
T ss_dssp TTCHHHHHHHTT--TCCEEEECCSCCCHHHHHHCC---HHHHHHHTHHHHHHHHHHHHTTCC-EEEEEEEGGGGCCCSSS
T ss_pred cccchhhhcccc--ccceEEeecccccccccccch---HHHhhhhHHHHHHHHHHHHHcCCc-eEEEeecceeecCCCCC
Confidence 999998888777 899999999875544444333 556789999999999999999987 9999999999998764
Q ss_pred CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCC
Q 011707 240 DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDG 319 (479)
Q Consensus 240 ~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g 319 (479)
++.|+ .+..|.+.|+.+|.++|.+++.++++++++++++||++||||++.+
T Consensus 138 ~~~E~--------------~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lR~~~vyGp~~~~--------------- 188 (322)
T d1r6da_ 138 SWTES--------------SPLEPNSPYAASKAGSDLVARAYHRTYGLDVRITRCCNNYGPYQHP--------------- 188 (322)
T ss_dssp CBCTT--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECEEECTTCCT---------------
T ss_pred CCCCC--------------CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEECcCCCc---------------
Confidence 56665 4667889999999999999999999999999999999999998754
Q ss_pred cccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhh
Q 011707 320 VFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEK 398 (479)
Q Consensus 320 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~ 398 (479)
..+++.++.++..++++.++++|++.++|+|++|+|++++.+++++.. ++ +||+++ +.+++.|+++.+.+.
T Consensus 189 --~~~i~~~i~~~~~~~~i~v~~~g~~~r~~i~v~D~a~ai~~~~~~~~~-~~--~~ni~~~~~~s~~e~~~~i~~~--- 260 (322)
T d1r6da_ 189 --EKLIPLFVTNLLDGGTLPLYGDGANVREWVHTDDHCRGIALVLAGGRA-GE--IYHIGGGLELTNRELTGILLDS--- 260 (322)
T ss_dssp --TSHHHHHHHHHHTTCCEEEETTSCCEEEEEEHHHHHHHHHHHHHHCCT-TC--EEEECCCCEEEHHHHHHHHHHH---
T ss_pred --CcHHHHHHHHHHcCCCcEEecCCCeEEccEEHHHHHHHHHHHHhCCCC-CC--eeEEeecccchhHHHHHHHHHH---
Confidence 246788999999999999999999999999999999999999998665 44 999999 679999999999998
Q ss_pred cCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhccc
Q 011707 399 LGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDR 455 (479)
Q Consensus 399 ~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~ 455 (479)
+|.+.+.......+ ......+.+|++|+++ |||+|+++++|+++++++|++.++++
T Consensus 261 ~~~~~~~~~~~~~~-~~~~~~~~~d~~k~~~~lg~~p~~~~eegI~~~i~w~~~n~~~ 317 (322)
T d1r6da_ 261 LGADWSSVRKVADR-KGHDLRYSLDGGKIERELGYRPQVSFADGLARTVRWYRENRGW 317 (322)
T ss_dssp HTCCGGGEEEECCC-TTCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHCHHH
T ss_pred hCCCccceeecCCC-CCCCceeeeCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhHHh
Confidence 77776544332222 2234456789999987 99999999999999999999987763
|
| >d1sb8a_ c.2.1.2 (A:) UDP-N-acetylglucosamine 4-epimerase WbpP {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-N-acetylglucosamine 4-epimerase WbpP species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=5.8e-46 Score=365.29 Aligned_cols=320 Identities=20% Similarity=0.235 Sum_probs=255.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
+.|+|||||||||||++|+++|+++|++|+++|+..++.... +.............++.++.+|+.|.
T Consensus 15 ~~k~iLVTG~tGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~d~~d~ 82 (341)
T d1sb8a_ 15 QPKVWLITGVAGFIGSNLLETLLKLDQKVVGLDNFATGHQRN------------LDEVRSLVSEKQWSNFKFIQGDIRNL 82 (341)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHH------------HHHHHHHSCHHHHTTEEEEECCTTSH
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEECCCCcchhh------------HHHHHHhhhhcccCCeeEEeeccccc
Confidence 468999999999999999999999999999999865432110 00000011111125789999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcC
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEE 243 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e 243 (479)
..+..... .++.|+|+++......+..++ ...+++|+.|+.+++++|.+.+++ +|||+||..+||.... +..|
T Consensus 83 ~~~~~~~~--~~~~v~~~~a~~~~~~~~~~~---~~~~~~Nv~gt~~ll~~~~~~~~~-~~i~~SS~~vyg~~~~~~~~E 156 (341)
T d1sb8a_ 83 DDCNNACA--GVDYVLHQAALGSVPRSINDP---ITSNATNIDGFLNMLIAARDAKVQ-SFTYAASSSTYGDHPGLPKVE 156 (341)
T ss_dssp HHHHHHHT--TCSEEEECCSCCCHHHHHHCH---HHHHHHHTHHHHHHHHHHHHTTCS-EEEEEEEGGGGTTCCCSSBCT
T ss_pred cccccccc--cccccccccccccccccccCc---cchhheeehhHHHHHHHHHhcCCc-eEEEcccceeeCCCCCCCccC
Confidence 98888877 899999999876655444443 567899999999999999999987 9999999999997665 6666
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
+ .+..|.+.|+.+|.++|++++.+++.++++++++||++||||+.++ .+.+..
T Consensus 157 ~--------------~~~~p~~~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~v~G~~~~~-------------~~~~~~ 209 (341)
T d1sb8a_ 157 D--------------TIGKPLSPYAVTKYVNELYADVFSRCYGFSTIGLRYFNVFGRRQDP-------------NGAYAA 209 (341)
T ss_dssp T--------------CCCCCCSHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCEECTTCCC-------------CSTTCC
T ss_pred C--------------CCCCCCCcchHHHHHHHHHHHHHHHHhCCCeEEEEeceeeccCcCC-------------CCchhh
Confidence 5 4667889999999999999999999999999999999999998764 344556
Q ss_pred hHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCc
Q 011707 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLD 402 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~ 402 (479)
++..++.+++.|+++.++++|.+.++|+||+|++.++..++..+... ...+||+++ +.+|+.|+++.+.+........
T Consensus 210 ~i~~~~~~~~~g~~i~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~~~-~~~~~~~~~~~~~si~~i~~~i~~~~~~~~~~ 288 (341)
T d1sb8a_ 210 VIPKWTSSMIQGDDVYINGDGETSRDFCYIENTVQANLLAATAGLDA-RNQVYNIAVGGRTSLNQLFFALRDGLAENGVS 288 (341)
T ss_dssp HHHHHHHHHHHTCCCEEESSSCCEECCEEHHHHHHHHHHHHTCCGGG-CSEEEEESCSCCEEHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHcCCceEEcCCCCEEEEEEEEeccchhhhhhhhccccc-cceeeeecccccchHHHHHHHHHHHhcccccc
Confidence 78899999999999999999999999999999999999999875432 234999998 6799999999999984333322
Q ss_pred c--eeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHh
Q 011707 403 V--KTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 403 ~--~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~ 452 (479)
. .....+.. ......+.+|++|+++ |||+|+++++++++++++||..|
T Consensus 289 ~~~~~~~~~~~--~~~~~~~~~d~~k~~~~LGw~p~~sl~~gi~~ti~wy~~~ 339 (341)
T d1sb8a_ 289 YHREPVYRDFR--EGDVRHSLADISKAAKLLGYAPKYDVSAGVALAMPWYIMF 339 (341)
T ss_dssp CCCCCEEECCC--TTCCSBCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHH
T ss_pred ccccccccCCC--CCCcCeeeeCHHHHHHHHCCCcCCCHHHHHHHHHHHHHHh
Confidence 2 22222222 2233455689999988 99999999999999999998765
|
| >d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.1e-43 Score=347.63 Aligned_cols=333 Identities=23% Similarity=0.254 Sum_probs=260.0
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||||||||++|+++|+++|++|+++|+........ ....+..+........++.++.+|++|.+.
T Consensus 3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~ 72 (346)
T d1ek6a_ 3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAFRGG----------GSLPESLRRVQELTGRSVEFEEMDILDQGA 72 (346)
T ss_dssp SEEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSCBCS----------SSSBHHHHHHHHHHTCCCEEEECCTTCHHH
T ss_pred CeEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccccc----------ccchHHHHHHHHhcCCCcEEEEeecccccc
Confidence 6899999999999999999999999999999865432111 112233334444455789999999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCce
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYI 246 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~~ 246 (479)
+++++....+++|+|+||..+......+| ...+++|+.|+.++++++++.+++ +|+|+||+.+||.......+...
T Consensus 73 l~~~~~~~~~~~i~h~Aa~~~~~~~~~~p---~~~~~~Nv~gt~~l~~~~~~~~v~-~~i~~ss~~~~~~~~~~~~~~~~ 148 (346)
T d1ek6a_ 73 LQRLFKKYSFMAVIHFAGLKAVGESVQKP---LDYYRVNLTGTIQLLEIMKAHGVK-NLVFSSSATVYGNPQYLPLDEAH 148 (346)
T ss_dssp HHHHHHHCCEEEEEECCSCCCHHHHHHCH---HHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGGCSCSSSSBCTTS
T ss_pred ccccccccccccccccccccCcHhhHhCH---HHHHHhhhcccccccchhhhcCcc-cccccccceeeeccccccccccc
Confidence 99999877889999999987766666555 456899999999999999999998 99999999999987653333211
Q ss_pred eecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH-hCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 247 TINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA-WGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
....+.+.|+.+|..+|+.+..+++. .+++.+++||+++|||..... ....+.+....++
T Consensus 149 ------------~~~~~~~~Y~~~k~~~e~~~~~~~~~~~~~~~~~lR~~~v~G~~~~~~-------~~~~~~~~~~~~~ 209 (346)
T d1ek6a_ 149 ------------PTGGCTNPYGKSKFFIEEMIRDLCQADKTWNAVLLRYFNPTGAHASGC-------IGEDPQGIPNNLM 209 (346)
T ss_dssp ------------CCCCCSSHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECEEECCCTTSS-------CCCCCSSSCCSHH
T ss_pred ------------cccccCChHHHHHHHHHHHHHHHHHhccCCceEEEeecceeccCCCCC-------cCccccccHHHHH
Confidence 12345789999999999999998876 489999999999999975321 0112233334455
Q ss_pred HHHHHHHh-cCCCeEEec------CCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhh
Q 011707 326 NRFCVQAA-VGHPLTVYG------KGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGE 397 (479)
Q Consensus 326 ~~~~~~~~-~~~~~~~~~------~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~ 397 (479)
..++..+. .+.++.+++ ++.+.|||+|++|+|.++..++..........+|||++ ..+++.|+++.|.+.
T Consensus 210 ~~~~~~~~~~~~~i~i~g~~~~~~~g~~~Rdfi~v~D~a~~~~~~~~~~~~~~~~~i~Ni~~~~~~s~~dl~~~i~~~-- 287 (346)
T d1ek6a_ 210 PYVSQVAIGRREALNVFGNDYDTEDGTGVRDYIHVVDLAKGHIAALRKLKEQCGCRIYNLGTGTGYSVLQMVQAMEKA-- 287 (346)
T ss_dssp HHHHHHHHTSSSCEEEECSCSSSSSSSCEECEEEHHHHHHHHHHHHHHHTTTCCEEEEEECCSCCEEHHHHHHHHHHH--
T ss_pred HHHHHHHHcCCCcEEEcCCcccCCCCCeeEeEEEEEeccchhhhhccccccccCceEEEeCCCCcccHHHHHHHHHHH--
Confidence 55555444 455677664 46678999999999999998876655444446999999 679999999999998
Q ss_pred hcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcccCC
Q 011707 398 KLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDRVD 457 (479)
Q Consensus 398 ~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~~~ 457 (479)
+|.++++.+.+.... ....+.+|++|+++ |||+|+++++|+++++++|++++++++.
T Consensus 288 -~~~~~~~~~~~~~~~--e~~~~~~d~~k~~~~lgw~p~~slee~I~~~i~w~~~n~~~~~ 345 (346)
T d1ek6a_ 288 -SGKKIPYKVVARREG--DVAACYANPSLAQEELGWTAALGLDRMCEDLWRWQKQNPSGFG 345 (346)
T ss_dssp -HCSCCCEEEECCCTT--CCSEECBCCHHHHHTTCCCCCCCHHHHHHHHHHHHHHCTTCSC
T ss_pred -hCCCCCeEECCCCCC--CCCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCHhhcC
Confidence 888888887775543 33455689999988 9999999999999999999999988764
|
| >d2blla1 c.2.1.2 (A:316-657) Polymyxin resistance protein ArnA (PrmI) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Polymyxin resistance protein ArnA (PrmI) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-43 Score=348.89 Aligned_cols=321 Identities=18% Similarity=0.165 Sum_probs=246.3
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
|+|||||||||||++|+++|+++| ++|+++|+....... . ....+++++.+|+++.+
T Consensus 1 MKILITG~tGfiG~~l~~~Ll~~g~~~V~~ld~~~~~~~~--------------------~--~~~~~~~~i~~Di~~~~ 58 (342)
T d2blla1 1 MRVLILGVNGFIGNHLTERLLREDHYEVYGLDIGSDAISR--------------------F--LNHPHFHFVEGDISIHS 58 (342)
T ss_dssp CEEEEETCSSHHHHHHHHHHHHSTTCEEEEEESCCGGGGG--------------------G--TTCTTEEEEECCTTTCS
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCCcchhh--------------------h--ccCCCeEEEECccCChH
Confidence 589999999999999999999999 589999875432111 0 11368999999999887
Q ss_pred HHHH-HhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcC
Q 011707 166 FLSE-SFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEE 243 (479)
Q Consensus 166 ~~~~-~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e 243 (479)
.+.+ +++ ++|+|||+|+.........++ ...+.+|+.|+.+++++|.+.+. +++++||+.+|+.... ...|
T Consensus 59 ~~~~~~~~--~~d~Vih~a~~~~~~~~~~~~---~~~~~~nv~gt~~ll~~~~~~~~--~~~~~ss~~~~~~~~~~~~~~ 131 (342)
T d2blla1 59 EWIEYHVK--KCDVVLPLVAIATPIEYTRNP---LRVFELDFEENLRIIRYCVKYRK--RIIFPSTSEVYGMCSDKYFDE 131 (342)
T ss_dssp HHHHHHHH--HCSEEEECBCCCCHHHHHHSH---HHHHHHHTHHHHHHHHHHHHTTC--EEEEECCGGGGBTCCCSSBCT
T ss_pred HHHHHHHh--CCCccccccccccccccccCC---ccccccccccccccccccccccc--ccccccccccccccccccccc
Confidence 6665 544 799999999987655554443 55688999999999999999884 6788999999987664 3333
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
...... ......|.+.|+.||.++|++++.+++.+|++++++||+.+|||..... .........
T Consensus 132 ~~~~~~-------~~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~i~r~~~~~g~~~~~~---------~~~~~~~~~ 195 (342)
T d2blla1 132 DHSNLI-------VGPVNKPRWIYSVSKQLLDRVIWAYGEKEGLQFTLFRPFNWMGPRLDNL---------NAARIGSSR 195 (342)
T ss_dssp TTCCCB-------CCCTTCGGGHHHHHHHHHHHHHHHHHHHHCCCEEEEEECSEECSSCCCT---------TCSBSCBCH
T ss_pred cccccc-------ccccCCCcchhhhcccchhhhhhhhhcccCceeEEeecccccccccccc---------ccccccccc
Confidence 211111 1123456789999999999999999999999999999999999975432 112222345
Q ss_pred hHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-C-CcCHHHHHHHHHHHhhhcCC
Q 011707 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-E-QFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~-~~s~~el~~~i~~~~~~~g~ 401 (479)
.+..++.+++.|+++.++++|++.++|+|++|+|+++..+++++.....+.+|||++ + .+|+.|+++.+.+. +|.
T Consensus 196 ~~~~~~~~~~~g~~~~~~~~g~~~r~~i~v~D~~~a~~~~~~~~~~~~~g~~~Nig~~~~~~t~~~l~~~i~~~---~~~ 272 (342)
T d2blla1 196 AITQLILNLVEGSPIKLIDGGKQKRCFTDIRDGIEALYRIIENAGNRCDGEIINIGNPENEASIEELGEMLLAS---FEK 272 (342)
T ss_dssp HHHHHHHHHHHTCCEEEGGGSCCEEECEEHHHHHHHHHHHHHCGGGTTTTEEEEECCTTSEEEHHHHHHHHHHH---HHT
T ss_pred cchHHHHHHHhCCCccccCCCCeeeeecccccccceeeeehhhccccCCCeEEEEecccchhHHHHHHHHHHHH---hCC
Confidence 678999999999999999999999999999999999999999864333335999986 4 48999999999998 554
Q ss_pred cceeeecCCCCc-------------ccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhccc
Q 011707 402 DVKTISVPNPRV-------------EAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDR 455 (479)
Q Consensus 402 ~~~~~~~~~~~~-------------~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~ 455 (479)
.......+.... .....+..+|++|+++ |||+|+++++|+|+++++||+.+.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~k~~~~lgw~P~~sleegl~~ti~~y~~~~~~ 340 (342)
T d2blla1 273 HPLRHHFPPFAGFRVVESSSYYGKGYQDVEHRKPSIRNAHRCLDWEPKIDMQETIDETLDFFLRTVDL 340 (342)
T ss_dssp CTTGGGSCCCCCEEEC------------CCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHSCT
T ss_pred CccccccCcccccceeccccccccccccccccccCHHHHHHHHCCCcCCCHHHHHHHHHHHHHhCcCC
Confidence 443333322111 1122344579999987 99999999999999999999887764
|
| >d1t2aa_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.3e-43 Score=346.22 Aligned_cols=320 Identities=19% Similarity=0.146 Sum_probs=244.2
Q ss_pred cEE-EEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 87 KRV-MIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 87 ~~v-LVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
|+| ||||||||||++|+++|+++||+|+++||........ .+.............+++++.+|++|.+
T Consensus 1 kKI~LVTG~tGfIG~~l~~~Ll~~g~~V~~i~r~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~Dl~d~~ 69 (347)
T d1t2aa_ 1 RNVALITGITGQDGSYLAEFLLEKGYEVHGIVRRSSSFNTG-----------RIEHLYKNPQAHIEGNMKLHYGDLTDST 69 (347)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCT-----------TTGGGC---------CEEEEECCTTCHH
T ss_pred CCEEEEecCCcHHHHHHHHHHHHCcCEEEEEECCCcccchh-----------hHHHHhhchhhhccCCcEEEEeecCCch
Confidence 467 9999999999999999999999999999965421110 0011111111122357899999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCc--ceEEEeeccccccCCCC-CCc
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQE--CHLVKLGTMGEYGTPNI-DIE 242 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~--~~~V~~SS~~v~g~~~~-~~~ 242 (479)
.+..++...++++|+|+|+.........++ ...+++|+.||.+++++|++++.. ++|||+||..|||.+.. ++.
T Consensus 70 ~~~~~~~~~~~~~v~~~~a~~~~~~~~~~~---~~~~~~Nv~gt~~ll~~~~~~~~~~~~~~i~~SS~~vyg~~~~~~~~ 146 (347)
T d1t2aa_ 70 CLVKIINEVKPTEIYNLGAQSHVKISFDLA---EYTADVDGVGTLRLLDAVKTCGLINSVKFYQASTSELYGKVQEIPQK 146 (347)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHHHSH---HHHHHHHTHHHHHHHHHHHHTTCTTTCEEEEEEEGGGTCSCSSSSBC
T ss_pred hhHHHHhhcccceeeeeeeccccchhhccc---hhhhhhHHHHHHHHHHHHHHcCCCCCcEEEEecchheecCCCCCCCC
Confidence 999999888999999999976655555543 345789999999999999998753 38999999999997654 566
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|+ .+..|.+.|+.||.++|++++.+++.++++++++||++||||+..... ...
T Consensus 147 E~--------------~~~~P~~~Yg~sK~~aE~~~~~~~~~~~~~~~ilr~~~vyGp~~~~~~-------------~~~ 199 (347)
T d1t2aa_ 147 ET--------------TPFYPRSPYGAAKLYAYWIVVNFREAYNLFAVNGILFNHESPRRGANF-------------VTR 199 (347)
T ss_dssp TT--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTS-------------HHH
T ss_pred CC--------------CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEecceeCCCCCCCc-------------ccc
Confidence 65 356778999999999999999999999999999999999999754321 112
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCC
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~ 401 (479)
.....++.....+.++.+++++++.++|+|++|+++++..++++.... .|+++. ...++.+..+.+... ++.
T Consensus 200 ~~~~~i~~~~~~~~~~~~~g~g~~~r~~i~v~D~~~a~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~---~~~ 272 (347)
T d1t2aa_ 200 KISRSVAKIYLGQLECFSLGNLDAKRDWGHAKDYVEAMWLMLQNDEPE----DFVIATGEVHSVREFVEKSFLH---IGK 272 (347)
T ss_dssp HHHHHHHHHHHTSCSCEEESCTTCEECCEEHHHHHHHHHHHHHSSSCC----CEEECCSCCEEHHHHHHHHHHH---TTC
T ss_pred ccceeeehhhcCCcceeecCCCcceeeeeEecHHHHHHHHHhhcCCCc----cceeccccccccchhhhhhhhh---hcc
Confidence 334455566667778889999999999999999999999999986542 588877 679999999998887 666
Q ss_pred cceeeecCCC-------------------CcccccccccCCchHHHH-cCCcccccHHHHHHHHHHH-HHHhcc
Q 011707 402 DVKTISVPNP-------------------RVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNF-AIQFKD 454 (479)
Q Consensus 402 ~~~~~~~~~~-------------------~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~-~~~~~~ 454 (479)
.+.....+.. ........+.+|++|+++ |||+|+++++|+++++++| ++++|.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~~~~~~~d~skak~~Lgw~P~~sl~e~i~~~I~~~~~~~k~ 346 (347)
T d1t2aa_ 273 TIVWEGKNENEVGRCKETGKVHVTVDLKYYRPTEVDFLQGDCTKAKQKLNWKPRVAFDELVREMVHADVELMRT 346 (347)
T ss_dssp CEEEESCGGGCEEEETTTCCEEEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred eeeecccchhhhhhhhhcCCceeeecccCCCCCCcCEeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHhc
Confidence 5443322110 001122345679999987 9999999999999999987 566654
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=4.1e-43 Score=347.85 Aligned_cols=314 Identities=17% Similarity=0.126 Sum_probs=249.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++|+|||||||||||++|+++|+++|++|+++|+........ ......+..+|+++
T Consensus 13 ~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~~~~~~~-----------------------~~~~~~~~~~D~~~ 69 (363)
T d2c5aa1 13 SENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTE-----------------------DMFCDEFHLVDLRV 69 (363)
T ss_dssp TSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCSSSCG-----------------------GGTCSEEEECCTTS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCCccchhh-----------------------hcccCcEEEeechh
Confidence 3688999999999999999999999999999998764421110 01356788899999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCc
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIE 242 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~ 242 (479)
.+.+.++++ ++|+|||+|+........ .......+.+|+.|+.+++++|++.+++ +|||+||..+|+.... +..
T Consensus 70 ~~~~~~~~~--~~d~Vih~a~~~~~~~~~--~~~~~~~~~~n~~gt~~ll~~~~~~~vk-~~i~~SS~~~~~~~~~~~~~ 144 (363)
T d2c5aa1 70 MENCLKVTE--GVDHVFNLAADMGGMGFI--QSNHSVIMYNNTMISFNMIEAARINGIK-RFFYASSACIYPEFKQLETT 144 (363)
T ss_dssp HHHHHHHHT--TCSEEEECCCCCCCHHHH--TTCHHHHHHHHHHHHHHHHHHHHHTTCS-EEEEEEEGGGSCGGGSSSSS
T ss_pred HHHHHHHhh--cCCeEeeccccccccccc--ccccccccccccchhhHHHHhHHhhCcc-cccccccccccccccccccc
Confidence 999999888 899999999865432221 1223556789999999999999999998 9999999999987654 444
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
|......+. .+..|.+.|+.+|.++|++++.+.+++|++++++||+++|||++.... ....
T Consensus 145 ~~~~~~~e~-------~~~~p~~~Yg~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyG~~~~~~~------------~~~~ 205 (363)
T d2c5aa1 145 NVSLKESDA-------WPAEPQDAFGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKG------------GREK 205 (363)
T ss_dssp SCEECGGGG-------SSBCCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCCSS------------SCCC
T ss_pred ccccccccC-------CcCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeeeEeccCCcccc------------cccc
Confidence 443322211 356778999999999999999999999999999999999999865421 1112
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCC
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~ 401 (479)
.....+........+...+++|.+.++|+|++|++++++.+++++. ++ +|||++ ..+|+.|+++.+.+. +|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~g~g~~~rd~i~v~D~~~~~~~~~~~~~--~~--~~ni~~~~~~s~~~l~~~i~~~---~g~ 278 (363)
T d2c5aa1 206 APAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDF--RE--PVNIGSDEMVSMNEMAEMVLSF---EEK 278 (363)
T ss_dssp HHHHHHHHHHHCSSCEEEESCSCCEECCEEHHHHHHHHHHHHHSSC--CS--CEEECCCCCEEHHHHHHHHHHT---TTC
T ss_pred cccccccccccccccccccCCCCeEEEEeehhHHHHHHHHHHhCCC--CC--eEEEecCCcccHHHHHHHHHHH---hCC
Confidence 2334455556677788899999999999999999999999998653 44 899998 689999999999998 888
Q ss_pred cceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcc
Q 011707 402 DVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKD 454 (479)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~ 454 (479)
+.++...+.+. ....+.+|++|+++ |||+|+++++|+++++++|++.+.+
T Consensus 279 ~~~i~~~~~~~---~~~~~~~d~ska~~~LGw~p~~sleegi~~ti~w~~~~~~ 329 (363)
T d2c5aa1 279 KLPIHHIPGPE---GVRGRNSDNNLIKEKLGWAPNMRLKEGLRITYFWIKEQIE 329 (363)
T ss_dssp CCCEEEECCCC---CCSBCEECCHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHH
T ss_pred CCceEeCCCCC---CccccccCHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 88887777543 23345589999987 9999999999999999999977644
|
| >d1oc2a_ c.2.1.2 (A:) dTDP-glucose 4,6-dehydratase (RmlB) {Streptococcus suis, serotype 2 [TaxId: 1307]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-glucose 4,6-dehydratase (RmlB) species: Streptococcus suis, serotype 2 [TaxId: 1307]
Probab=100.00 E-value=2.4e-43 Score=347.25 Aligned_cols=319 Identities=20% Similarity=0.263 Sum_probs=245.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEE--EEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVA--IVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~--~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
++|+|||||||||||++|+++|++.|++|. ++|+...... ..........+++++.+|++
T Consensus 1 ~~mkILVTGgtGfIGs~lv~~L~~~g~~v~v~~~d~~~~~~~------------------~~~~~~~~~~~i~~~~~Di~ 62 (346)
T d1oc2a_ 1 QFKNIIVTGGAGFIGSNFVHYVYNNHPDVHVTVLDKLTYAGN------------------KANLEAILGDRVELVVGDIA 62 (346)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHCTTCEEEEEECCCTTCC------------------GGGTGGGCSSSEEEEECCTT
T ss_pred CcCEEEEeCCCcHHHHHHHHHHHHCCCCeEEEEEeCCCcccc------------------HHHHHHhhcCCeEEEEccCC
Confidence 479999999999999999999999998754 4454322110 11112233468999999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIE 242 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~ 242 (479)
|.+.+.+++. +.|.|+|+|+.........++ ...+++|+.|+.+++++|+..+ .++|++||+.+||.... .
T Consensus 63 d~~~~~~~~~--~~~~v~~~a~~~~~~~~~~~~---~~~~~~N~~g~~nll~~~~~~~--~k~i~~ss~~vyg~~~~--~ 133 (346)
T d1oc2a_ 63 DAELVDKLAA--KADAIVHYAAESHNDNSLNDP---SPFIHTNFIGTYTLLEAARKYD--IRFHHVSTDEVYGDLPL--R 133 (346)
T ss_dssp CHHHHHHHHT--TCSEEEECCSCCCHHHHHHCC---HHHHHHHTHHHHHHHHHHHHHT--CEEEEEEEGGGGCCBCC--G
T ss_pred CHHHHHHHHh--hhhhhhhhhhcccccchhhCc---ccceeeehHhHHhhhhhhcccc--ccccccccceEecccCc--c
Confidence 9999999998 899999999977655555554 5678999999999999999988 47999999999985321 1
Q ss_pred CCce-eecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 243 EGYI-TINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 243 e~~~-~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
|... .............+..|.+.|+.+|.++|.+++.++++++++++++||++||||+...
T Consensus 134 ~~~~~~~~~~~~~~~e~~~~~p~s~Y~~sK~~~E~~~~~~~~~~~i~~~ilR~~~vyGp~~~~----------------- 196 (346)
T d1oc2a_ 134 EDLPGHGEGPGEKFTAETNYNPSSPYSSTKAASDLIVKAWVRSFGVKATISNCSNNYGPYQHI----------------- 196 (346)
T ss_dssp GGSTTTTCSTTSSBCTTSCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEESTTCCT-----------------
T ss_pred ccccccccCcccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCEEEEeecceeCCCCCc-----------------
Confidence 1000 0000000111113557789999999999999999999999999999999999998654
Q ss_pred cchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcC
Q 011707 322 GTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g 400 (479)
...+..++.....+.++.+++++.+.++|+|++|+|++++.+++++...+ .||+++ +..++.|+++.+.+. ++
T Consensus 197 ~~~~~~~i~~~~~~~~~~i~~~g~~~r~~i~v~D~a~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~~~---~~ 270 (346)
T d1oc2a_ 197 EKFIPRQITNILAGIKPKLYGEGKNVRDWIHTNDHSTGVWAILTKGRMGE---TYLIGADGEKNNKEVLELILEK---MG 270 (346)
T ss_dssp TSHHHHHHHHHHHTCCCEEETTSCCEEECEEHHHHHHHHHHHHHHCCTTC---EEEECCSCEEEHHHHHHHHHHH---TT
T ss_pred cchhHHHHHHHHcCCceeEeCCCCccccccchhhHHHHHHHHHhhcccCc---cccccccccccchHHHHHHHHH---hC
Confidence 23567788888899999999999999999999999999999998776544 789888 779999999999998 66
Q ss_pred Ccc-eeeecCCCCcccccccccCCchHHHH-cCCcccc-cHHHHHHHHHHHHHHhccc
Q 011707 401 LDV-KTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHI-LSDSLLDSLLNFAIQFKDR 455 (479)
Q Consensus 401 ~~~-~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~-~~~~~~~~~~~~~~~~~~~ 455 (479)
.+. .+...+... .....+.+|++|+++ |||+|++ +++++++++++|++.++++
T Consensus 271 ~~~~~~~~~~~~~--~~~~~~~~d~~k~~~~LGw~P~~t~l~e~i~~ti~w~~~n~~~ 326 (346)
T d1oc2a_ 271 QPKDAYDHVTDRA--GHDLRYAIDASKLRDELGWTPQFTDFSEGLEETIQWYTDNQDW 326 (346)
T ss_dssp CCTTCSEEECCCT--TCCCBCCBCCHHHHHHHCCCCSCCCHHHHHHHHHHHHHHTHHH
T ss_pred CCCcceEECCCCC--CCCceeeeCHHHHHHHHCCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence 543 333333322 223345689999987 9999997 6999999999999986653
|
| >d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=6.5e-43 Score=340.30 Aligned_cols=310 Identities=18% Similarity=0.154 Sum_probs=243.9
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||||||||++|+++|+++||+|++++|....... ++++.+. ...+++++.+|++|.+.
T Consensus 1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~~~~---------------~~l~~~~--~~~~~~~~~~Dl~d~~~ 63 (321)
T d1rpna_ 1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTR---------------WRLRELG--IEGDIQYEDGDMADACS 63 (321)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCC---------------HHHHHTT--CGGGEEEEECCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCcccH---------------HHHHHhc--ccCCcEEEEccccChHH
Confidence 689999999999999999999999999999986542110 1111111 12579999999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGY 245 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~ 245 (479)
+.+++....+++++|+|+.........++ ..++..|+.|+.+++++|++.+.+.+|++.||..+||.... ...|+
T Consensus 64 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~n~~g~~~~l~~~~~~~~~~~~i~~Ss~~~~~~~~~~~~~E~- 139 (321)
T d1rpna_ 64 VQRAVIKAQPQEVYNLAAQSFVGASWNQP---VTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDEN- 139 (321)
T ss_dssp HHHHHHHHCCSEEEECCSCCCHHHHTTSH---HHHHHHHTHHHHHHHHHHHHHCTTSEEEEEEEGGGGCSCSSSSBCTT-
T ss_pred hhhhhccccccccccccccccccccccch---HHHHhhhhhchHHHHHHHHHhCCCcccccccchhhcCcccCCCCCCC-
Confidence 99999887899999999876555444443 55688999999999999999997778999999999987654 44454
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
.+..|.+.|+.+|.++|++++.+.+.++++++++||+++|||...++.. ...+
T Consensus 140 -------------~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~lr~~~vyGp~~~~~~~--------------~~~i 192 (321)
T d1rpna_ 140 -------------TPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFV--------------TRKV 192 (321)
T ss_dssp -------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEECTTSCTTSH--------------HHHH
T ss_pred -------------CCccccChhHHHHHHHHHHHHHHHhhcCCcEEEEEEecccCCCcccccc--------------HHHH
Confidence 3567789999999999999999999999999999999999997543221 1234
Q ss_pred HHHHHHHhcCC-CeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCcc
Q 011707 326 NRFCVQAAVGH-PLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDV 403 (479)
Q Consensus 326 ~~~~~~~~~~~-~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~ 403 (479)
..++.++..++ +...++++++.++|+|++|+|++++.+++++.. . .||+++ +..|+.++++.+.+. .|...
T Consensus 193 ~~~~~~~~~~~~~~i~~g~g~~~r~~i~v~D~~~~~~~~~~~~~~--~--~~ni~~~~~~s~~~~~~~~~~~---~~~~~ 265 (321)
T d1rpna_ 193 TDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKA--D--DYVVATGVTTTVRDMCQIAFEH---VGLDY 265 (321)
T ss_dssp HHHHHHHHTTSCSCEEESCTTCEEECEEHHHHHHHHHHHHHSSSC--C--CEEECCSCEEEHHHHHHHHHHT---TTCCG
T ss_pred HHHHHHHHhCCCCcEEECCCCeEEccEEeHHHHHHHHHHHhcCCc--C--CceecccccceehhhhHHHHHH---hCCCc
Confidence 44555555544 566788999999999999999999999998643 2 799998 679999999999998 66654
Q ss_pred eee--ecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHH
Q 011707 404 KTI--SVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 404 ~~~--~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
+.. ..+..........+..|++|+++ |||+|+++++|+++++++|+..
T Consensus 266 ~~~~~~~~~~~rp~~~~~~~~d~~k~~k~lG~~P~~~l~e~i~~tv~~~l~ 316 (321)
T d1rpna_ 266 RDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLR 316 (321)
T ss_dssp GGTEEECGGGCCSSCCCBCCBCTHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred cceeecCCCCCCCCccCCccCCHHHHHHHHCCCcCCCHHHHHHHHHHHHHH
Confidence 322 22222222334456789999987 9999999999999999999655
|
| >d1z45a2 c.2.1.2 (A:11-357) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.6e-43 Score=344.70 Aligned_cols=330 Identities=21% Similarity=0.231 Sum_probs=244.0
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|.|||||||||||++|+++|+++|++|+++|+..++..+ ...........+++++.+|++|.+.
T Consensus 2 K~ILVTGatGfIG~~lv~~Ll~~g~~V~~~d~~~~~~~~----------------~~~~~~~~~~~~v~~~~~Dl~d~~~ 65 (347)
T d1z45a2 2 KIVLVTGGAGYIGSHTVVELIENGYDCVVADNLSNSTYD----------------SVARLEVLTKHHIPFYEVDLCDRKG 65 (347)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCTH----------------HHHHHHHHHTSCCCEEECCTTCHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCeEEEEECCCCcchh----------------HHHhHHhhcccCCeEEEeecCCHHH
Confidence 679999999999999999999999999999976543211 1112222234689999999999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCce
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGYI 246 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~~ 246 (479)
++.+++..++|+|||+||.........++ ..++.+|+.|+.+++++|++.+++ +||++||..|||.......+..+
T Consensus 66 l~~~~~~~~~d~VihlAa~~~~~~~~~~~---~~~~~~N~~~t~~ll~~~~~~~i~-~~i~~SS~~vyg~~~~~~~~~~~ 141 (347)
T d1z45a2 66 LEKVFKEYKIDSVIHFAGLKAVGESTQIP---LRYYHNNILGTVVLLELMQQYNVS-KFVFSSSATVYGDATRFPNMIPI 141 (347)
T ss_dssp HHHHHHHSCCCEEEECCSCCCHHHHHHSH---HHHHHHHHHHHHHHHHHHHHHTCC-EEEEEEEGGGGCCGGGSTTCCSB
T ss_pred HHHHHhccCCCEEEEccccccccccccCc---ccccccchhhhHHHHHHHHhcccc-eEEeecceeeecCcccCCCCCcc
Confidence 99999888999999999987655554443 456789999999999999999988 99999999999976532222211
Q ss_pred eecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH--hCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccch
Q 011707 247 TINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA--WGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324 (479)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~--~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~ 324 (479)
.++ .+..|.+.|+.+|.++|++++.+.+. .+++++++||+++||+..... -...+.+.+..+
T Consensus 142 ~e~---------~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~lR~~~v~g~~~~~~-------~g~~~~~~~~~~ 205 (347)
T d1z45a2 142 PEE---------CPLGPTNPYGHTKYAIENILNDLYNSDKKSWKFAILRYFNPIGAHPSGL-------IGEDPLGIPNNL 205 (347)
T ss_dssp CTT---------SCCCCCSHHHHHHHHHHHHHHHHHHHSTTSCEEEEEEECEEECCCTTSS-------CCCCCSSSCCSH
T ss_pred ccc---------cCCCCCChhHhHHHHHHHHHHHHHHhhccCCcEEEEeecceEeecCCCc-------cCCCccccHHHH
Confidence 110 35567899999999999999998765 479999999999999864321 011223333445
Q ss_pred HHHHHHHHh-cCCCeEEecCC------CceeccccHHHHHHHHHHHHhCCC----CCCCceEEEeCC-CCcCHHHHHHHH
Q 011707 325 LNRFCVQAA-VGHPLTVYGKG------GQTRGYLDIRDTVQCVELAIANPA----QPGEFRVFNQFT-EQFSVNQLAALV 392 (479)
Q Consensus 325 ~~~~~~~~~-~~~~~~~~~~~------~~~~~~v~v~Dva~a~~~~~~~~~----~~g~~~~~ni~~-~~~s~~el~~~i 392 (479)
+..++..+. .+.++.+++++ ...+|++++.|++.+++.+++... .....++||+++ .++|+.|+++.+
T Consensus 206 ~~~~~~~~~~~~~~i~i~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ni~~~~~~s~~e~~~~i 285 (347)
T d1z45a2 206 LPYMAQVAVGRREKLYIFGDDYDSRDGTPIRDYIHVVDLAKGHIAALQYLEAYNENEGLCREWNLGSGKGSTVFEVYHAF 285 (347)
T ss_dssp HHHHHHHHTTSSSCCCCC------CCSSCEECEEEHHHHHHHHHHHHHHHHHSCTTCCEEEEEEESCSCCEEHHHHHHHH
T ss_pred HHHHHHHHhcCCCCeEEeCCCccccCCceeeeeeeeecccccccccccccccccccccccccceecCCCcccHHHHHHHH
Confidence 555554444 34466676654 456778888889999888876422 111235999998 689999999999
Q ss_pred HHHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcccCC
Q 011707 393 TKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDRVD 457 (479)
Q Consensus 393 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~~~ 457 (479)
.+. +|.+.++...+.... ....+.+|++|+++ |||+|+++++|+++++++|++.+++++.
T Consensus 286 ~~~---~~~~~~~~~~~~~~~--~~~~~~~d~sk~~~~lGw~p~~~lee~i~~ti~w~~~np~~~~ 346 (347)
T d1z45a2 286 CKA---SGIDLPYKVTGRRAG--DVLNLTAKPDRAKRELKWQTELQVEDSCKDLWKWTTENPFGYQ 346 (347)
T ss_dssp HHH---HTCCCCC-----------CCCCCBCCHHHHHHTCCCCCCCHHHHHHHHHHHHHHCTTCSC
T ss_pred HHH---HCCCCceEeCCCCCC--CCCEeeECHHHHHHHHCCCCCCCHHHHHHHHHHHHHhChhcCc
Confidence 998 888877776654332 33456789999987 9999999999999999999999988764
|
| >d1n7ha_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=1.2e-41 Score=333.70 Aligned_cols=318 Identities=19% Similarity=0.143 Sum_probs=239.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.|+|||||||||||+||+++|+++||+|+++||..+..... ++.. ............+.++.+|+++.+
T Consensus 1 ~k~~LVTGatGfiG~~lv~~Ll~~g~~V~~~~r~~~~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~Di~~~~ 69 (339)
T d1n7ha_ 1 RKIALITGITGQDGSYLTEFLLGKGYEVHGLIRRSSNFNTQ-----RINH------IYIDPHNVNKALMKLHYADLTDAS 69 (339)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSSCCCT-----TTTT------TC--------CCEEEEECCTTCHH
T ss_pred CCEEEEeCCccHHHHHHHHHHHHCcCEEEEEECCCcccchh-----hhhh------hhhhhhhccccceEEEEccccCHH
Confidence 47899999999999999999999999999999865321110 0000 000111122357889999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC----CcceEEEeeccccccCCCCCC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR----QECHLVKLGTMGEYGTPNIDI 241 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g----~~~~~V~~SS~~v~g~~~~~~ 241 (479)
.+.+.++..++|+|||+|+.........+| ...+..|+.|+.++++++++.+ ...++++.||+.+|+....+.
T Consensus 70 ~~~~~~~~~~~D~Vih~Aa~~~~~~~~~~p---~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ss~~~~~~~~~~~ 146 (339)
T d1n7ha_ 70 SLRRWIDVIKPDEVYNLAAQSHVAVSFEIP---DYTADVVATGALRLLEAVRSHTIDSGRTVKYYQAGSSEMFGSTPPPQ 146 (339)
T ss_dssp HHHHHHHHHCCSEEEECCSCCCHHHHHHSH---HHHHHHHTHHHHHHHHHHHHHHHHHCCCCEEEEEEEGGGGTTSCSSB
T ss_pred HHHHHHhhhccchhhhccccccccccccCc---cccccccccccchhhhhhhhcccccccceeeeecccceecccCCCCC
Confidence 999999877899999999986655554444 4567899999999999997643 223688888888888776667
Q ss_pred cCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcc
Q 011707 242 EEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVF 321 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~ 321 (479)
+|+ .+..|.+.|+.+|.++|+++..+.+.++++++++||++||||+..++..
T Consensus 147 ~E~--------------~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~ilR~~~vyGp~~~~~~~-------------- 198 (339)
T d1n7ha_ 147 SET--------------TPFHPRSPYAASKCAAHWYTVNYREAYGLFACNGILFNHESPRRGENFV-------------- 198 (339)
T ss_dssp CTT--------------SCCCCCSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTSCTTSH--------------
T ss_pred CCC--------------CCCCCcchhhHHHHHHHHHHHHHHHHhCCCEEEEEEccccCCCCCCCCC--------------
Confidence 776 4667899999999999999999999999999999999999997554321
Q ss_pred cchHHHHHHHH-hcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhc
Q 011707 322 GTALNRFCVQA-AVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKL 399 (479)
Q Consensus 322 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~ 399 (479)
...+...+... ....+..+.+++.+.+||+|++|+++++..+++++... .+++.. ...++.++++.+.+. +
T Consensus 199 ~~~i~~~~~~~~~~~~~~~~~g~~~~~rd~~~v~D~a~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~~~~~~---~ 271 (339)
T d1n7ha_ 199 TRKITRALGRIKVGLQTKLFLGNLQASRDWGFAGDYVEAMWLMLQQEKPD----DYVVATEEGHTVEEFLDVSFGY---L 271 (339)
T ss_dssp HHHHHHHHHHHHHTSCCCEEESCTTCEEECEEHHHHHHHHHHHHTSSSCC----EEEECCSCEEEHHHHHHHHHHH---T
T ss_pred cchhhHHHHHHhcCCCCeEEeCCCCccccceeeehHHHHHHHHHhcCCCC----ccccccccccccchhhhhhhhh---h
Confidence 12233333444 34456667788999999999999999999999986543 455555 679999999999998 6
Q ss_pred CCcce--eeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHh
Q 011707 400 GLDVK--TISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 400 g~~~~--~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~ 452 (479)
|...+ +...+..........+.+|++|+++ |||+|+++++++++++++|+...
T Consensus 272 ~~~~~~~~~~~~~~~r~~~~~~~~~d~~Kak~~LGw~P~~~le~gi~~ti~~~~~~ 327 (339)
T d1n7ha_ 272 GLNWKDYVEIDQRYFRPAEVDNLQGDASKAKEVLGWKPQVGFEKLVKMMVDEDLEL 327 (339)
T ss_dssp TCCGGGTEEECGGGSCSSCCCBCCBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHHH
T ss_pred hcccCceeeeccCCCCCCCCCeeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHHH
Confidence 65533 2222222223334556789999987 99999999999999999998654
|
| >d1gy8a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) species: Trypanosoma brucei [TaxId: 5691]
Probab=100.00 E-value=9.1e-42 Score=340.57 Aligned_cols=347 Identities=23% Similarity=0.282 Sum_probs=245.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHh-CCCeEEEEecccccccccccCCCCCCccchhhhhhhhh----cccCCCceeEEEcc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSN-KGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW----KSLTGKNIELYIGD 160 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~-~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~v~~D 160 (479)
+|+|||||||||||++|+++|++ .|++|+++|+........ ................ ......++.++.+|
T Consensus 2 ~MKVLITG~tGfIGs~lv~~LL~~~~~~V~~~D~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 77 (383)
T d1gy8a_ 2 HMRVLVCGGAGYIGSHFVRALLRDTNHSVVIVDSLVGTHGKS----DHVETRENVARKLQQSDGPKPPWADRYAALEVGD 77 (383)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCCCEEEEEECCTTTTTCC----TTSCCHHHHHHHHHHSCSSCCTTTTCCCEEEESC
T ss_pred cCEEEEeCCCcHHHHHHHHHHHHhCCCEEEEEecCCcccccc----hhhhhhhhHHHHhhhhccccccccccceEEEECc
Confidence 57999999999999999999996 589999999754322111 0111111111111111 11223578899999
Q ss_pred cCChHHHHHHhhhc-CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC
Q 011707 161 ICDFEFLSESFKSF-EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI 239 (479)
Q Consensus 161 l~d~~~~~~~~~~~-~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~ 239 (479)
++|.+.++++++.. ++|+|||+|+.........++ ...+++|+.++.++++++++.+++ +++++||..+|+....
T Consensus 78 i~d~~~l~~~~~~~~~~d~ViH~Aa~~~~~~~~~~~---~~~~~~N~~~t~~~l~~~~~~~~~-~~~~~~s~~~~~~~~~ 153 (383)
T d1gy8a_ 78 VRNEDFLNGVFTRHGPIDAVVHMCAFLAVGESVRDP---LKYYDNNVVGILRLLQAMLLHKCD-KIIFSSSAAIFGNPTM 153 (383)
T ss_dssp TTCHHHHHHHHHHSCCCCEEEECCCCCCHHHHHHCH---HHHHHHHHHHHHHHHHHHHHTTCC-EEEEEEEGGGTBSCCC
T ss_pred ccCHHHhhhhhhccceeehhhccccccccccccccc---ccccccccccccccchhhhccCCc-cccccccccccccccc
Confidence 99999999999865 579999999976654444333 456789999999999999999988 9999999999887543
Q ss_pred -CCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCC
Q 011707 240 -DIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYD 318 (479)
Q Consensus 240 -~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~ 318 (479)
...++..+..+. .+..|.+.|+.+|..+|.+++.+.+.+|++++++||+++|||++........ ....
T Consensus 154 ~~~~~~~~~~~e~-------~~~~p~~~Y~~sK~~~e~~~~~~~~~~gl~~~~lR~~~vyG~~~~~~~~~~~----~~~~ 222 (383)
T d1gy8a_ 154 GSVSTNAEPIDIN-------AKKSPESPYGESKLIAERMIRDCAEAYGIKGICLRYFNACGAHEDGDIGEHY----QGST 222 (383)
T ss_dssp -----CCCCBCTT-------SCCBCSSHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEECCCTTSSCSCCS----TTCC
T ss_pred ccccccccccccc-------cCCCCCCHHHhhHhHHHHHHHHHHHHhCCCEEEEecceeeccCccccccccc----cccc
Confidence 222211111111 3557789999999999999999999999999999999999999865421000 0001
Q ss_pred CcccchHHHHH------------HHHhcCCCeEEec------CCCceeccccHHHHHHHHHHHHhCCCCC------CCce
Q 011707 319 GVFGTALNRFC------------VQAAVGHPLTVYG------KGGQTRGYLDIRDTVQCVELAIANPAQP------GEFR 374 (479)
Q Consensus 319 g~~~~~~~~~~------------~~~~~~~~~~~~~------~~~~~~~~v~v~Dva~a~~~~~~~~~~~------g~~~ 374 (479)
+.....+..++ .....++++.+++ +|.+.|||+||+|++++++.+++..... ....
T Consensus 223 ~~ip~ii~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~dg~~~Rdfi~v~D~~~a~~~~~~~~~~~~~~~~~~~~~ 302 (383)
T d1gy8a_ 223 HLIPIILGRVMSDIAPDQRLTIHEDASTDKRMPIFGTDYPTPDGTCVRDYVHVCDLASAHILALDYVEKLGPNDKSKYFS 302 (383)
T ss_dssp SHHHHHHHHHHHHHSCC-----------CCCEEEECSCSSSTTSSCEECEEEHHHHHHHHHHHHHHHHTCCTTTGGGSEE
T ss_pred hhHHHHHHHHHhhccccccchhhhhhhcCCceEEeCCccccCCCCeEEeeEEHHHHHHHHHHHHhhhccccccccccCcc
Confidence 11111122222 2233455666765 4788999999999999999998753221 1135
Q ss_pred EEEeCC-CCcCHHHHHHHHHHHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHH-HHHHHH
Q 011707 375 VFNQFT-EQFSVNQLAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSL-LNFAIQ 451 (479)
Q Consensus 375 ~~ni~~-~~~s~~el~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~-~~~~~~ 451 (479)
+|||++ .++|+.|+++.+.+. .|.++++...+.... ...++.+|++|+++ |||+|+++++|++.++ +.|++.
T Consensus 303 i~Ni~s~~~~s~~el~~~i~~~---~~~~~~~~~~~~~~~--d~~~~~~d~~k~~k~LGw~P~~~l~e~i~~t~~~w~~~ 377 (383)
T d1gy8a_ 303 VFNLGTSRGYSVREVIEVARKT---TGHPIPVRECGRREG--DPAYLVAASDKAREVLGWKPKYDTLEAIMETSWKFQRT 377 (383)
T ss_dssp EEEESCSCCEEHHHHHHHHHHH---HCCCCCEEEECCCTT--CCSEECBCCHHHHHHTCCCCSCCSHHHHHHHHHHHHHT
T ss_pred EEEeCCCCceeHHHHHHHHHHH---hCCCCceEECCCCCC--CcCEeeeCHHHHHHHHCCccCCCHHHHHHHHHHHHHHh
Confidence 999998 689999999999998 888888877765433 34456789999987 9999999999999776 688888
Q ss_pred hcccC
Q 011707 452 FKDRV 456 (479)
Q Consensus 452 ~~~~~ 456 (479)
+++.+
T Consensus 378 ~~~~~ 382 (383)
T d1gy8a_ 378 HPNGY 382 (383)
T ss_dssp CTTTT
T ss_pred CcccC
Confidence 76643
|
| >d1e6ua_ c.2.1.2 (A:) GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-4-keto-6-deoxy-d-mannose epimerase/reductase (GDP-fucose synthetase) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-41 Score=329.09 Aligned_cols=304 Identities=16% Similarity=0.137 Sum_probs=237.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.|+|||||||||||++|+++|+++|+.|+++++.. ..|++|.+
T Consensus 2 kkkIlITG~tGfiG~~l~~~L~~~g~~vi~~~~~~-------------------------------------~~~~~~~~ 44 (315)
T d1e6ua_ 2 KQRVFIAGHRGMVGSAIRRQLEQRGDVELVLRTRD-------------------------------------ELNLLDSR 44 (315)
T ss_dssp CEEEEEETTTSHHHHHHHHHHTTCTTEEEECCCTT-------------------------------------TCCTTCHH
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCcCEEEEecCch-------------------------------------hccccCHH
Confidence 57999999999999999999999999998765421 25899999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEG 244 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~ 244 (479)
.+.++++...+|.|+|+|+........ ..+....+++|+.||.+++++|++.+++ +|||+||.+|||.... ++.|+
T Consensus 45 ~~~~~~~~~~~d~v~~~a~~~~~~~~~--~~~~~~~~~~Nv~gt~~ll~~a~~~~v~-~~i~~SS~~vyg~~~~~~~~E~ 121 (315)
T d1e6ua_ 45 AVHDFFASERIDQVYLAAAKVGGIVAN--NTYPADFIYQNMMIESNIIHAAHQNDVN-KLLFLGSSCIYPKLAKQPMAES 121 (315)
T ss_dssp HHHHHHHHHCCSEEEECCCCCCCHHHH--HHCHHHHHHHHHHHHHHHHHHHHHTTCC-EEEEECCGGGSCTTCCSSBCGG
T ss_pred HHHHHHhhcCCCEEEEcchhccccccc--hhhHHHHHHHHHHHHHHHHHHHHHcCCC-EEEEECCceEcCCCCCCCccCC
Confidence 999999877899999999865432211 1122446789999999999999999988 9999999999997654 55664
Q ss_pred ceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc-c
Q 011707 245 YITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG-T 323 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~-~ 323 (479)
... +. .+..+.+.|+.||.++|++++.+.+++|++++++||++||||++...... ..... .
T Consensus 122 ~~~-------~~--~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ilR~~~vyGp~~~~~~~~---------~~~~~~~ 183 (315)
T d1e6ua_ 122 ELL-------QG--TLEPTNEPYAIAKIAGIKLCESYNRQYGRDYRSVMPTNLYGPHDNFHPSN---------SHVIPAL 183 (315)
T ss_dssp GTT-------SS--CCCGGGHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECEEESTTCCCCTTC---------SSHHHHH
T ss_pred ccc-------cC--CCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEeeccEECCCCCCCccc---------cccceee
Confidence 221 11 12334568999999999999999999999999999999999987543110 00000 1
Q ss_pred hHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC------CCCceEEEeCC-CCcCHHHHHHHHHHHh
Q 011707 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ------PGEFRVFNQFT-EQFSVNQLAALVTKAG 396 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~------~g~~~~~ni~~-~~~s~~el~~~i~~~~ 396 (479)
....+......+.++.+++++.+.++|+|++|++.++..++++... .+....+|++. ...++.++++.+.+.
T Consensus 184 ~~~~~~~~~~~~~~~~~~g~g~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~- 262 (315)
T d1e6ua_ 184 LRRFHEATAQKAPDVVVWGSGTPMREFLHVDDMAAASIHVMELAHEVWLENTQPMLSHINVGTGVDCTIRELAQTIAKV- 262 (315)
T ss_dssp HHHHHHHHHHTCSEEEEESCSCCEECEEEHHHHHHHHHHHHHSCHHHHHHTSBTTBCCEEESCSCCEEHHHHHHHHHHH-
T ss_pred eccchhhhhccCCceEEcCCCceEEEEEEeehhHHHHHHhhhhccccccccccccccccccCCCcchHHHHHHHHHHHH-
Confidence 2334455666788899999999999999999999999999876422 12234799888 679999999999998
Q ss_pred hhcCCcceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHHHHHHh
Q 011707 397 EKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLNFAIQF 452 (479)
Q Consensus 397 ~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~~~~~~ 452 (479)
+|....+.+.+..+. ....+.+|++|+++|||+|+++++|+++++++|+...
T Consensus 263 --~~~~~~i~~~~~~~~--~~~~~~~d~sk~k~Lg~~p~~~l~e~i~~ti~w~~~N 314 (315)
T d1e6ua_ 263 --VGYKGRVVFDASKPD--GTPRKLLDVTRLHQLGWYHEISLEAGLASTYQWFLEN 314 (315)
T ss_dssp --HTCCSEEEEETTSCC--CCSBCCBCCHHHHHTTCCCCCCHHHHHHHHHHHHHHT
T ss_pred --hCCCcceEECCCCCC--CCceeccCHHHHHHcCCCCCCCHHHHHHHHHHHHHHc
Confidence 888888877665433 2334568999998999999999999999999999754
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=100.00 E-value=1.2e-40 Score=326.07 Aligned_cols=323 Identities=22% Similarity=0.319 Sum_probs=244.9
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFL 167 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~ 167 (479)
+|||||||||||++|+++|+++|++|+++|+..+... .+...... ...+++++.+|++|.+.+
T Consensus 2 KILVTGatGfIGs~lv~~Ll~~g~~V~~id~~~~~~~---------------~~~~~~~~--~~~~~~~i~~Di~~~~~l 64 (338)
T d1orra_ 2 KLLITGGCGFLGSNLASFALSQGIDLIVFDNLSRKGA---------------TDNLHWLS--SLGNFEFVHGDIRNKNDV 64 (338)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSTTH---------------HHHHHHHH--TTCCCEEEECCTTCHHHH
T ss_pred EEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCcccc---------------hhHHHHhh--ccCCcEEEEcccCCHHHH
Confidence 7999999999999999999999999999986543211 11111111 125899999999999999
Q ss_pred HHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CC--cCC
Q 011707 168 SESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DI--EEG 244 (479)
Q Consensus 168 ~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~--~e~ 244 (479)
.++++..++|+|||+|+.........++ ...+++|+.||.+|+++|.+.+++..|++.|+..+++.... +. .+.
T Consensus 65 ~~~~~~~~~d~Vih~aa~~~~~~~~~~~---~~~~~~Nv~gt~nll~~~~~~~~~~~i~~sS~~~~~~~~~~~~~~~~~~ 141 (338)
T d1orra_ 65 TRLITKYMPDSCFHLAGQVAMTTSIDNP---CMDFEINVGGTLNLLEAVRQYNSNCNIIYSSTNKVYGDLEQYKYNETET 141 (338)
T ss_dssp HHHHHHHCCSEEEECCCCCCHHHHHHCH---HHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEEGGGGTTCTTSCEEECSS
T ss_pred HHHHHhcCCceEEeecccccccccccCh---HHHHHHHHHHHHHHHHhhhcccccccccccccccccccccccccccccc
Confidence 9999987899999999987655444443 56778999999999999999998834445444555554432 11 122
Q ss_pred ceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccch
Q 011707 245 YITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~ 324 (479)
..+............+..+.+.|+.+|...|.++..+.+.+++...++|++++||+...... ....
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~ 207 (338)
T d1orra_ 142 RYTCVDKPNGYDESTQLDFHSPYGCSKGAADQYMLDYARIFGLNTVVFRHSSMYGGRQFATY--------------DQGW 207 (338)
T ss_dssp CEEETTCTTCBCTTSCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCEECTTCCCBT--------------TBCH
T ss_pred cccccccccCcccCCccccccccccccchhhhhhhhhhhccCcccccccccceeeccccccc--------------cccc
Confidence 22222111112222455678999999999999999999999999999999999988764321 1334
Q ss_pred HHHHHHHHh-----cCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC-CCCceEEEeCC---CCcCHHHHHHHHHHH
Q 011707 325 LNRFCVQAA-----VGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ-PGEFRVFNQFT---EQFSVNQLAALVTKA 395 (479)
Q Consensus 325 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~-~g~~~~~ni~~---~~~s~~el~~~i~~~ 395 (479)
+..++..++ .++++.++++|.+.++|+|++|++++++.++++... .++ +||+.. ..+++.|+++.+.+.
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~r~~~~v~D~~~~~~~~l~~~~~~~~~--~~~i~~~~~~~~s~~e~~~~i~~~ 285 (338)
T d1orra_ 208 VGWFCQKAVEIKNGINKPFTISGNGKQVRDVLHAEDMISLYFTALANVSKIRGN--AFNIGGTIVNSLSLLELFKLLEDY 285 (338)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEESSSCCEEECEEHHHHHHHHHHHHHTHHHHTTC--EEEESSCGGGEEEHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhccCCceEEeCCCceeEeeecccchhhHHHHHHhccccccCc--cccccccccccccHHHHHHHHHHH
Confidence 455555544 377899999999999999999999999999987543 455 999854 258999999999998
Q ss_pred hhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHH
Q 011707 396 GEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQ 451 (479)
Q Consensus 396 ~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~ 451 (479)
.+.+.++...+... .....+.+|++|+++ |||+|+++++++++++++|++.
T Consensus 286 ---~~~~~~~~~~~~~~--~~~~~~~~d~~k~~~~Lg~~p~~sl~e~i~~ti~W~k~ 337 (338)
T d1orra_ 286 ---CNIDMRFTNLPVRE--SDQRVFVADIKKITNAIDWSPKVSAKDGVQKMYDWTSS 337 (338)
T ss_dssp ---HTCCCCEEEECCCS--SCCSEECBCCHHHHHHHCCCCCSCHHHHHHHHHHHHHH
T ss_pred ---HCCCceeEeCCCCC--CCcCeeeECHHHHHHHHCCCcCCCHHHHHHHHHHHHHc
Confidence 88888877776543 233446689999987 9999999999999999999874
|
| >d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-glucose-4,6-dehydratase species: Yersinia pseudotuberculosis [TaxId: 633]
Probab=100.00 E-value=2.1e-38 Score=312.66 Aligned_cols=318 Identities=19% Similarity=0.192 Sum_probs=238.3
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.++|+|||||||||||++|++.|+++|++|++++|....... + .+... ...+++++.+|++|
T Consensus 6 ~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~~~~~-------------~---~~~~~--~~~~i~~~~~Dl~d 67 (356)
T d1rkxa_ 6 WQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAPTVPS-------------L---FETAR--VADGMQSEIGDIRD 67 (356)
T ss_dssp HTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCSSSSC-------------H---HHHTT--TTTTSEEEECCTTC
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCccHH-------------H---Hhhhh--cccCCeEEEeeccC
Confidence 478999999999999999999999999999999986543211 0 00000 12479999999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC--CC
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI--DI 241 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~--~~ 241 (479)
++.+.++++...+|+|+|+|+.........++ ..++.+|+.|+.++++++++.+....+++.||..+++.... +.
T Consensus 68 ~~~l~~~~~~~~~~~v~~~aa~~~~~~~~~~~---~~~~~~Nv~g~~n~l~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 144 (356)
T d1rkxa_ 68 QNKLLESIREFQPEIVFHMAAQPLVRLSYSEP---VETYSTNVMGTVYLLEAIRHVGGVKAVVNITSDKCYDNKEWIWGY 144 (356)
T ss_dssp HHHHHHHHHHHCCSEEEECCSCCCHHHHHHCH---HHHHHHHTHHHHHHHHHHHHHCCCCEEEEECCGGGBCCCCSSSCB
T ss_pred hHhhhhhhhhchhhhhhhhhccccccccccCC---ccccccccccchhhhhhhhcccccccccccccccccccccccccc
Confidence 99999999988899999999986655555544 55788999999999999999876646666666555554433 22
Q ss_pred cCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH---------hCCceEEeecCeeecCCCCchhhhHhhh
Q 011707 242 EEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA---------WGIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~---------~gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
.|+ .+..|.+.|+.+|...|..+..++.+ +++.++++||+++|||++...
T Consensus 145 ~~~--------------~~~~p~~~y~~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~------- 203 (356)
T d1rkxa_ 145 REN--------------EAMGGYDPYSNSKGCAELVTSSYRNSFFNPANYGQHGTAVATVRAGNVIGGGDWAL------- 203 (356)
T ss_dssp CTT--------------SCBCCSSHHHHHHHHHHHHHHHHHHHHSCGGGHHHHCCEEEEEECCCEECTTCCCS-------
T ss_pred ccc--------------cccCCCCccccccccchhhhhHHhhhcccchhccccCceEEeccCCCeeCCCcchh-------
Confidence 232 35567899999999999999887764 468899999999999986432
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCC--ceEEEeC--C-CCcCHHH
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGE--FRVFNQF--T-EQFSVNQ 387 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~--~~~~ni~--~-~~~s~~e 387 (479)
..++..++.....+.+ .+++.+.+.++++|++|++.++..++.++...+. ....+.. . ...++.+
T Consensus 204 ---------~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~~v~D~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (356)
T d1rkxa_ 204 ---------DRIVPDILRAFEQSQP-VIIRNPHAIRPWQHVLEPLSGYLLLAQKLYTDGAEYAEGWNFGPNDADATPVKN 273 (356)
T ss_dssp ---------SCHHHHHHHHHHTTCC-EECSCTTCEECCEETHHHHHHHHHHHHHHHHTCGGGCSEEECCCCGGGCEEHHH
T ss_pred ---------hHHHHHHHHHHhCCCc-eEEeeccccccccccccccchhhhhhhhhcccccccccccccccccccccccch
Confidence 2345566666555444 5678889999999999999999999887543221 0134433 3 3689999
Q ss_pred HHHHHHHHhhhcCCcceeeecCCCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHHHhcccCC
Q 011707 388 LAALVTKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAIQFKDRVD 457 (479)
Q Consensus 388 l~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~~~~~~~~ 457 (479)
+++.+.+. ++....+......+ +.....+.+|++|+++ |||+|+++++++++++++|++.|.+..+
T Consensus 274 ~~~~i~~~---~~~~~~~~~~~~~~-~~~~~~~~~d~skak~~LGw~P~~~l~egi~~ti~wyk~~~~~~~ 340 (356)
T d1rkxa_ 274 IVEQMVKY---WGEGASWQLDGNAH-PHEAHYLKLDCSKAKMQLGWHPRWNLNTTLEYIVGWHKNWLSGTD 340 (356)
T ss_dssp HHHHHHHH---HCTTCCEEC--------CCCCCCBCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred hhhhhHHH---hCCCccEEEcCCCC-CCCcCeeeEcHHHHHHHHCCCcCCCHHHHHHHHHHHHHHHHcCCC
Confidence 99999998 77776665543322 2334556789999987 9999999999999999999998876554
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=100.00 E-value=3.2e-36 Score=295.48 Aligned_cols=317 Identities=15% Similarity=0.076 Sum_probs=220.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhc-ccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK-SLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~Dl~d 163 (479)
+||+|||||||||||++|+++|+++|++|++++|....... ....+. .........+.+|++|
T Consensus 10 ~gk~VlVTG~sGfIGs~l~~~Ll~~G~~V~~~vR~~~~~~~----------------~~~~~~~~~~~~~~~~~~~Dl~~ 73 (342)
T d1y1pa1 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASKLAN----------------LQKRWDAKYPGRFETAVVEDMLK 73 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH----------------HHHHHHHHSTTTEEEEECSCTTS
T ss_pred CcCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCchhHHH----------------HHHhhhccccccccEEEeccccc
Confidence 58999999999999999999999999999998875432110 001111 1122345567899999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccccCCCC---
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEYGTPNI--- 239 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~g~~~~--- 239 (479)
.+.+.+++. ++|+|+|+|+....... ....+..|+.||.+++++|.+. +++ +|||+||+++++....
T Consensus 74 ~~~~~~~~~--~~~~v~~~a~~~~~~~~------~~~~~~~nv~gt~~ll~~~~~~~~v~-~~i~~SS~~~~~~~~~~~~ 144 (342)
T d1y1pa1 74 QGAYDEVIK--GAAGVAHIASVVSFSNK------YDEVVTPAIGGTLNALRAAAATPSVK-RFVLTSSTVSALIPKPNVE 144 (342)
T ss_dssp TTTTTTTTT--TCSEEEECCCCCSCCSC------HHHHHHHHHHHHHHHHHHHHTCTTCC-EEEEECCGGGTCCCCTTCC
T ss_pred hhhhhhhcc--cchhhhhhccccccccc------ccccccchhhhHHHHHHhhhcccccc-cccccccceeeccCCCCCC
Confidence 999999998 89999999997543222 2345788999999999999987 465 9999999765443221
Q ss_pred --CCcCCceeecCCCC--CCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhC--CceEEeecCeeecCCCCchhhhHhhhc
Q 011707 240 --DIEEGYITINHNGR--TDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWG--IRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 240 --~~~e~~~~~~~~~~--~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~g--l~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
...|..++...... ......+..|.+.|+.+|..+|++++.+++.++ ++++++||+.+|||...+..
T Consensus 145 ~~~~~e~~~~~~~~~~~~~~~e~~~~~p~~~Y~~sK~~~E~~~~~~~~~~~~~~~~~~i~p~~v~Gp~~~~~~------- 217 (342)
T d1y1pa1 145 GIYLDEKSWNLESIDKAKTLPESDPQKSLWVYAASKTEAELAAWKFMDENKPHFTLNAVLPNYTIGTIFDPET------- 217 (342)
T ss_dssp CCEECTTCCCHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEEESEEECCCSCTTT-------
T ss_pred CccccccccccccccccccccccCCCCCcCcccchhHhHHHHHHHhhhhcccccccceecccceeCCCCCccc-------
Confidence 22232221110000 001113455678999999999999999998874 77889999999999754321
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHH
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALV 392 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i 392 (479)
....+..++..+..++.....+ +.+.++|+||+|+|++++.+++++...++ ||+++ +.+|+.|+++.|
T Consensus 218 -------~~~~~~~~~~~l~~g~~~~~~~-~~~~~~~v~v~Dva~~~i~~l~~~~~~g~---~~~~~~~~~t~~eia~~i 286 (342)
T d1y1pa1 218 -------QSGSTSGWMMSLFNGEVSPALA-LMPPQYYVSAVDIGLLHLGCLVLPQIERR---RVYGTAGTFDWNTVLATF 286 (342)
T ss_dssp -------CCCHHHHHHHHHHTTCCCHHHH-TCCSEEEEEHHHHHHHHHHHHHCTTCCSC---EEEECCEEECHHHHHHHH
T ss_pred -------cccchHHHHHHHHcCCcCcccC-CccceeeeeHHHHHHHHHHhhcCccccce---EEEEcCCceEHHHHHHHH
Confidence 1235677888888887654443 45668999999999999999999877775 55555 789999999999
Q ss_pred HHHhhhcCCcceeeecCCCCcccccccccCCchHHHHcCCcccccHHHHHHHHHH
Q 011707 393 TKAGEKLGLDVKTISVPNPRVEAEEHYYNAKHTKLIELGLQPHILSDSLLDSLLN 447 (479)
Q Consensus 393 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~d~~k~~~lG~~p~~~~~~~~~~~~~ 447 (479)
.+.++... ++... +.............+.++++.|||.|.++++++++++++
T Consensus 287 ~k~~p~~~--~~~~~-~~~~~~~~~~~~~~s~~~~k~lg~~~~~~lee~i~d~I~ 338 (342)
T d1y1pa1 287 RKLYPSKT--FPADF-PDQGQDLSKFDTAPSLEILKSLGRPGWRSIEESIKDLVG 338 (342)
T ss_dssp HHHCTTSC--CCCCC-CCCCCCCCEECCHHHHHHHHHTTCCSCCCHHHHHHHHHC
T ss_pred HHHcCCCc--CCccC-CccCcccccccchHHHHHHHHcCCCCCcCHHHHHHHHHH
Confidence 99732222 22211 111111111122233455567999999999999999975
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=100.00 E-value=2.2e-35 Score=280.97 Aligned_cols=273 Identities=18% Similarity=0.155 Sum_probs=223.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||||||||++|+++|.++|++|++++|. .+|++|.++
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~--------------------------------------~~D~~d~~~ 43 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQ--------------------------------------DLDITNVLA 43 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTT--------------------------------------TCCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeech--------------------------------------hccCCCHHH
Confidence 679999999999999999999999999998762 258999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGY 245 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~ 245 (479)
++++++..++|+|||+|+..........+ ......|+..+.++++.++..+ ..++++||..+|+.... +..|.
T Consensus 44 ~~~~l~~~~~d~vih~a~~~~~~~~~~~~---~~~~~~n~~~~~~~~~~~~~~~--~~~~~~ss~~v~~~~~~~~~~e~- 117 (281)
T d1vl0a_ 44 VNKFFNEKKPNVVINCAAHTAVDKCEEQY---DLAYKINAIGPKNLAAAAYSVG--AEIVQISTDYVFDGEAKEPITEF- 117 (281)
T ss_dssp HHHHHHHHCCSEEEECCCCCCHHHHHHCH---HHHHHHHTHHHHHHHHHHHHHT--CEEEEEEEGGGSCSCCSSCBCTT-
T ss_pred HHHHHHHcCCCEEEeeccccccccccccc---hhhccccccccccccccccccc--ccccccccceeeecccccccccc-
Confidence 99999988899999999987655554443 3456789999999999988876 47888899889887654 55554
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
.+..+...|+.+|..+|+++ ++.+++++++||++||||+.+ ++
T Consensus 118 -------------~~~~~~~~~~~~k~~~e~~~----~~~~~~~~i~R~~~vyG~~~~--------------------~~ 160 (281)
T d1vl0a_ 118 -------------DEVNPQSAYGKTKLEGENFV----KALNPKYYIVRTAWLYGDGNN--------------------FV 160 (281)
T ss_dssp -------------SCCCCCSHHHHHHHHHHHHH----HHHCSSEEEEEECSEESSSSC--------------------HH
T ss_pred -------------ccccchhhhhhhhhHHHHHH----HHhCCCccccceeEEeCCCcc--------------------cc
Confidence 24567899999999999866 456899999999999999743 45
Q ss_pred HHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCcce
Q 011707 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVK 404 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~~ 404 (479)
..++..+..++.+.+++ ++.++++|++|+++++..++++... | +||+++ +.+|+.|+++.+.+. +|.+++
T Consensus 161 ~~~~~~~~~~~~~~~~~--~~~~~~i~v~D~~~~~~~~~~~~~~-g---~~~~~~~~~~s~~e~~~~i~~~---~g~~~~ 231 (281)
T d1vl0a_ 161 KTMINLGKTHDELKVVH--DQVGTPTSTVDLARVVLKVIDEKNY-G---TFHCTCKGICSWYDFAVEIFRL---TGIDVK 231 (281)
T ss_dssp HHHHHHHHHCSEEEEES--SCEECCEEHHHHHHHHHHHHHHTCC-E---EEECCCBSCEEHHHHHHHHHHH---HCCCCE
T ss_pred cchhhhhccCCceeecC--Cceeccchhhhhhhhhhhhhhhccc-C---ceeEeCCCccchHHHHHHHHHH---hCCCce
Confidence 67788888888888776 4789999999999999999988653 2 899998 789999999999998 888888
Q ss_pred eeecCCCCccc---ccccccCCchHHHH-cCCcccccHHHHHHHHHHHHH
Q 011707 405 TISVPNPRVEA---EEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAI 450 (479)
Q Consensus 405 ~~~~~~~~~~~---~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~ 450 (479)
+...+...-.. ...+..+|++|+++ +||+|. +++++++++++|++
T Consensus 232 i~~i~~~~~~~~a~rp~~~~ld~~k~~~~~g~~~~-~~~~~l~~~l~~l~ 280 (281)
T d1vl0a_ 232 VTPCTTEEFPRPAKRPKYSVLRNYMLELTTGDITR-EWKESLKEYIDLLQ 280 (281)
T ss_dssp EEEECSTTSCCSSCCCSBCCBCCHHHHHTTCCCCC-BHHHHHHHHHHHHT
T ss_pred EEeccHHHcCCcCCCccccccCHHHHHHHhCCCCC-CHHHHHHHHHHHhc
Confidence 77655321111 11334589999988 999998 89999999999985
|
| >d1eq2a_ c.2.1.2 (A:) ADP-L-glycero-D-mannoheptose 6-epimerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: ADP-L-glycero-D-mannoheptose 6-epimerase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-34 Score=277.41 Aligned_cols=294 Identities=18% Similarity=0.154 Sum_probs=197.8
Q ss_pred EEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH-
Q 011707 89 VMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF- 166 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~- 166 (479)
|||||||||||++|+++|+++|+ +|+++|+..++.... .+ ......|..+.+.
T Consensus 2 ILITGgsGfIGs~lv~~L~~~g~~~V~~~d~~~~~~~~~------------------~~-------~~~~~~~~~~~~~~ 56 (307)
T d1eq2a_ 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNLKDGTKFV------------------NL-------VDLNIADYMDKEDF 56 (307)
T ss_dssp EEEETTTSHHHHHHHHHHHTTTCCCEEEEECCSSGGGGH------------------HH-------HTSCCSEEEEHHHH
T ss_pred EEEecCccHHHHHHHHHHHhCCCCeEEEEECCCCcchhh------------------cc-------cccchhhhccchHH
Confidence 89999999999999999999995 799998655432110 00 0011123333222
Q ss_pred HHHHhhh---cCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCc
Q 011707 167 LSESFKS---FEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIE 242 (479)
Q Consensus 167 ~~~~~~~---~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~ 242 (479)
....+.. ..+++|+|+|+........ .....+.|+.++.+++++++..++ ++|+.||..+|+.... ...
T Consensus 57 ~~~~~~~~~~~~~~~i~~~aa~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~i--~~v~~ss~~~~~~~~~~~~~ 129 (307)
T d1eq2a_ 57 LIQIMAGEEFGDVEAIFHEGACSSTTEWD-----GKYMMDNNYQYSKELLHYCLEREI--PFLYASSAATYGGRTSDFIE 129 (307)
T ss_dssp HHHHHTTCCCSSCCEEEECCSCCCTTCCC-----HHHHHHHTHHHHHHHHHHHHHHTC--CEEEEEEGGGGTTCCSCBCS
T ss_pred HHHHhhhhcccchhhhhhhcccccccccc-----cccccccccccccccccccccccc--cccccccccccccccccccc
Confidence 2222221 2588999999865433332 234568899999999999999885 5777777777765544 233
Q ss_pred CCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 243 EGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 243 e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
++ .+..+.+.|+.+|..+|.+++.++++++++++++||+++|||+.... +..+
T Consensus 130 ~~--------------~~~~~~~~Y~~~K~~~e~~~~~~~~~~~~~~~~~r~~~vyGp~~~~~-------------~~~~ 182 (307)
T d1eq2a_ 130 SR--------------EYEKPLNVYGYSKFLFDEYVRQILPEANSQIVGFRYFNVYGPREGHK-------------GSMA 182 (307)
T ss_dssp SG--------------GGCCCSSHHHHHHHHHHHHHHHHGGGCSSCEEEEEECEEESSSCGGG-------------GGGS
T ss_pred cc--------------cccccccccccccchhhhhccccccccccccccccceeEeecccccc-------------cccc
Confidence 32 13456899999999999999999999999999999999999986532 2234
Q ss_pred chHHHHHHHHhcCCCeEE-ecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcC
Q 011707 323 TALNRFCVQAAVGHPLTV-YGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLG 400 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g 400 (479)
.++..++.++..++...+ .+++.+.++|+|++|++.++..++++... .+||+++ +..|+.|+++.+.+. .
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~v~d~~~~~~~~~~~~~~----~~~~~~~~~~~si~~i~~~i~~~---~- 254 (307)
T d1eq2a_ 183 SVAFHLNTQLNNGESPKLFEGSENFKRDFVYVGDVADVNLWFLENGVS----GIFNLGTGRAESFQAVADATLAY---H- 254 (307)
T ss_dssp CHHHHHHHHHHC-------------CBCEEEHHHHHHHHHHHHHHCCC----EEEEESCSCCBCHHHHHHHC--------
T ss_pred ccccccccccccccceeeecCccceeeeeeecccHHHHHHHHhhhccc----cccccccccchhHHHHHHHHHHh---c-
Confidence 566777788888775544 57778899999999999999999987532 3899998 689999999999885 2
Q ss_pred CcceeeecC--CCCcccccccccCCchHHHH-cCCcccccHHHHHHHHHHHH
Q 011707 401 LDVKTISVP--NPRVEAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFA 449 (479)
Q Consensus 401 ~~~~~~~~~--~~~~~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~ 449 (479)
...++.+.+ .............|++|+++ +||+|+++++|+|+++++|+
T Consensus 255 ~~~~i~~~~~~~~~~~~~~~~~~~d~~k~~~~~~~~p~~sl~egi~~~i~w~ 306 (307)
T d1eq2a_ 255 KKGQIEYIPFPDKLKGRYQAFTQADLTNLRAAGYDKPFKTVAEGVTEYMAWL 306 (307)
T ss_dssp -----------------CCCSCCBCCHHHHHTTCCCCCCCHHHHHHHHHHHT
T ss_pred CCCCeeEeeCCccCCCCCceeeecCHHHHHHHHCCCCCCCHHHHHHHHHHhC
Confidence 223333322 22222233344579999988 99999999999999999996
|
| >d1n2sa_ c.2.1.2 (A:) dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) {Salmonella enterica serovar typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: dTDP-6-deoxy-L-lyxo-4-hexulose reductase (RmlD) species: Salmonella enterica serovar typhimurium [TaxId: 90371]
Probab=99.98 E-value=2.7e-31 Score=254.29 Aligned_cols=282 Identities=15% Similarity=0.167 Sum_probs=206.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|||||||||||++|+++|.++|+.| ++++... .+.+|++|.+.
T Consensus 1 MKILItG~tGfiG~~l~~~L~~~g~~v-~~~~~~~----------------------------------~~~~Dl~~~~~ 45 (298)
T d1n2sa_ 1 MNILLFGKTGQVGWELQRSLAPVGNLI-ALDVHSK----------------------------------EFCGDFSNPKG 45 (298)
T ss_dssp CEEEEECTTSHHHHHHHHHTTTTSEEE-EECTTCS----------------------------------SSCCCTTCHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEE-EEECCCc----------------------------------cccCcCCCHHH
Confidence 679999999999999999999988644 4554321 12479999999
Q ss_pred HHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCC-CCcCCc
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNI-DIEEGY 245 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~-~~~e~~ 245 (479)
++++++..++|+|||+||.........++ ...+.+|+.++.+++++|++.+ .+++++||+.+|+.... +..|.
T Consensus 46 ~~~~i~~~~~D~Vih~Aa~~~~~~~~~~~---~~~~~~n~~~~~~l~~~~~~~~--~~~~~~ss~~~~~~~~~~~~~E~- 119 (298)
T d1n2sa_ 46 VAETVRKLRPDVIVNAAAHTAVDKAESEP---ELAQLLNATSVEAIAKAANETG--AWVVHYSTDYVFPGTGDIPWQET- 119 (298)
T ss_dssp HHHHHHHHCCSEEEECCCCCCHHHHTTCH---HHHHHHHTHHHHHHHHHHTTTT--CEEEEEEEGGGSCCCTTCCBCTT-
T ss_pred HHHHHHHcCCCEEEEecccccccccccCc---cccccccccccccchhhhhccc--cccccccccccccCCCCCCCccc-
Confidence 99999988899999999987665555554 5567899999999999999887 47899999888876654 56665
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
.+..|.+.|+.+|..+|.+++.+ .....++|++..|+.... ...
T Consensus 120 -------------~~~~p~~~y~~~k~~~e~~~~~~----~~~~~~~~~~~~~~~~~~-------------------~~~ 163 (298)
T d1n2sa_ 120 -------------DATSPLNVYGKTKLAGEKALQDN----CPKHLIFRTSWVYAGKGN-------------------NFA 163 (298)
T ss_dssp -------------SCCCCSSHHHHHHHHHHHHHHHH----CSSEEEEEECSEECSSSC-------------------CHH
T ss_pred -------------cccCCCchHhhhhhhhhhhHHhh----hcccccccccceeeccCC-------------------ccc
Confidence 35567899999999999877543 444566666665544321 123
Q ss_pred HHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhC---CCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCC
Q 011707 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN---PAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGL 401 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~---~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~ 401 (479)
..+...+..+.++.+.+ .+.++++|++|+++++..++.. ....+ .+||+++ +.+++.|+++.+.+.....+.
T Consensus 164 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~~~~~~~i~~~~~~~~~~--~~~n~~~~~~~~~~~~~~~i~~~~~~~~~ 239 (298)
T d1n2sa_ 164 KTMLRLAKERQTLSVIN--DQYGAPTGAELLADCTAHAIRVALNKPEVA--GLYHLVAGGTTTWHDYAALVFDEARKAGI 239 (298)
T ss_dssp HHHHHHHHHCSEEEEEC--SCEECCEEHHHHHHHHHHHHHHHHHCGGGC--EEEECCCBSCEEHHHHHHHHHHHHHHHTC
T ss_pred hhhhhhhcccceeeccc--ceeecccccchHHHHHHHHHhhhhcccccc--ccccccCCCceecHHHHHHHHhhhhccCc
Confidence 44555566666666654 5678999999999999887753 22223 4999999 789999999999887544554
Q ss_pred cceeee---cCCCCc---ccccccccCCchHHHH-cCCcccccHHHHHHHHHHHHH
Q 011707 402 DVKTIS---VPNPRV---EAEEHYYNAKHTKLIE-LGLQPHILSDSLLDSLLNFAI 450 (479)
Q Consensus 402 ~~~~~~---~~~~~~---~~~~~~~~~d~~k~~~-lG~~p~~~~~~~~~~~~~~~~ 450 (479)
...... .+...- .....+..+|++|+++ +||+|+ +++++|+++++.+.
T Consensus 240 ~~~~~~~~~i~~~~~~~~a~RP~~~~ld~~K~~~~~~~~~~-~~~~gl~~~i~~~~ 294 (298)
T d1n2sa_ 240 TLALTELNAVPTSAYPTPASRPGNSRLNTEKFQRNFDLILP-QWELGVKRMLTEMF 294 (298)
T ss_dssp CCCCCEEEEECSTTSCCSSCCCSBCCBCCHHHHHHHTCCCC-BHHHHHHHHHHHHH
T ss_pred cccccceeeeehhhcCccCCCccccccCHHHHHHHHCCCCC-cHHHHHHHHHHHHH
Confidence 433221 111100 0011234689999987 999998 89999999998764
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=9.2e-27 Score=210.58 Aligned_cols=202 Identities=16% Similarity=0.131 Sum_probs=158.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+.+|+|+||||||+||++++++|+++|++|++++|..... ......+++++.+|++|
T Consensus 1 m~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~-----------------------~~~~~~~~~~~~gD~~d 57 (205)
T d1hdoa_ 1 MAVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRL-----------------------PSEGPRPAHVVVGDVLQ 57 (205)
T ss_dssp CCCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGS-----------------------CSSSCCCSEEEESCTTS
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhc-----------------------ccccccccccccccccc
Confidence 3578999999999999999999999999999999865421 11123578999999999
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcC
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEE 243 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e 243 (479)
.+++.++++ ++|+|||++|..... + ..+++..++.++++++++++++ +||++||.++++....
T Consensus 58 ~~~l~~al~--~~d~vi~~~g~~~~~----~------~~~~~~~~~~~l~~aa~~~~v~-r~i~~ss~~~~~~~~~---- 120 (205)
T d1hdoa_ 58 AADVDKTVA--GQDAVIVLLGTRNDL----S------PTTVMSEGARNIVAAMKAHGVD-KVVACTSAFLLWDPTK---- 120 (205)
T ss_dssp HHHHHHHHT--TCSEEEECCCCTTCC----S------CCCHHHHHHHHHHHHHHHHTCC-EEEEECCGGGTSCTTC----
T ss_pred hhhHHHHhc--CCCEEEEEeccCCch----h------hhhhhHHHHHHHHHHHHhcCCC-eEEEEeeeeccCCCcc----
Confidence 999999999 899999999853211 1 1257889999999999999998 9999999988876531
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
.......|...|..+|++++ +.|++++|+||+.+++....
T Consensus 121 ----------------~~~~~~~~~~~~~~~e~~l~----~~~~~~tiirp~~~~~~~~~-------------------- 160 (205)
T d1hdoa_ 121 ----------------VPPRLQAVTDDHIRMHKVLR----ESGLKYVAVMPPHIGDQPLT-------------------- 160 (205)
T ss_dssp ----------------SCGGGHHHHHHHHHHHHHHH----HTCSEEEEECCSEEECCCCC--------------------
T ss_pred ----------------ccccccccchHHHHHHHHHH----hcCCceEEEecceecCCCCc--------------------
Confidence 11224578888999988664 57999999999999864321
Q ss_pred hHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeC
Q 011707 324 ALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQF 379 (479)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~ 379 (479)
....+..++.....+++++|+|++++.+++++...|+ .+.++
T Consensus 161 ------------~~~~~~~~~~~~~~~i~~~DvA~~~~~~l~~~~~~g~--~~~~s 202 (205)
T d1hdoa_ 161 ------------GAYTVTLDGRGPSRVISKHDLGHFMLRCLTTDEYDGH--STYPS 202 (205)
T ss_dssp ------------SCCEEESSSCSSCSEEEHHHHHHHHHHTTSCSTTTTC--EEEEE
T ss_pred ------------ccEEEeeCCCCCCCcCCHHHHHHHHHHHhCCCCCCCE--EEecC
Confidence 1223445566677899999999999999999877676 66655
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=99.95 E-value=4e-28 Score=233.43 Aligned_cols=247 Identities=16% Similarity=0.140 Sum_probs=182.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++++|||||||||||++|+++|+++|++|++++|...... .............+++++.+|++|.
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~---------------~~~~~~~~~~~~~~v~~v~~d~~d~ 66 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSN---------------IDKVQMLLYFKQLGAKLIEASLDDH 66 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSC---------------HHHHHHHHHHHTTTCEEECCCSSCH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccc---------------hhHHHHHhhhccCCcEEEEeecccc
Confidence 3567999999999999999999999999999988543211 1122222333346899999999999
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCC
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEG 244 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~ 244 (479)
+.+.+++. +.++++|+++... ...|..++.+++++|++.+.. ++++.||.+++....
T Consensus 67 ~~~~~~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~a~~~~~~-~~v~~Ss~g~~~~~~------ 123 (312)
T d1qyda_ 67 QRLVDALK--QVDVVISALAGGV--------------LSHHILEQLKLVEAIKEAGNI-KRFLPSEFGMDPDIM------ 123 (312)
T ss_dssp HHHHHHHT--TCSEEEECCCCSS--------------SSTTTTTHHHHHHHHHHSCCC-SEEECSCCSSCTTSC------
T ss_pred hhhhhhcc--Ccchhhhhhhhcc--------------cccchhhhhHHHHHHHHhcCC-cEEEEeeccccCCCc------
Confidence 99999998 8999999987421 245888889999999998877 888888866554321
Q ss_pred ceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccch
Q 011707 245 YITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTA 324 (479)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~ 324 (479)
..+..+...|...|..++. +....+++++++||+.+||+......
T Consensus 124 -------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~r~~~~~g~~~~~~~------------------ 168 (312)
T d1qyda_ 124 -------------EHALQPGSITFIDKRKVRR----AIEAASIPYTYVSSNMFAGYFAGSLA------------------ 168 (312)
T ss_dssp -------------CCCCSSTTHHHHHHHHHHH----HHHHTTCCBCEEECCEEHHHHTTTSS------------------
T ss_pred -------------ccccchhhhhhHHHHHHHH----hhcccccceEEeccceeecCCccchh------------------
Confidence 0233344556655555554 55677999999999999997542110
Q ss_pred HHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCcc
Q 011707 325 LNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDV 403 (479)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~ 403 (479)
..+......++.+.+++++++.++|+|++|+|++++.+++++...++ .+|++++ +.+|+.|+++.+.+. +|.++
T Consensus 169 -~~~~~~~~~~~~~~~~~~g~~~~~~i~v~Dva~a~~~~l~~~~~~~~-~~~~~~~~~~~s~~e~~~~~~~~---~g~~~ 243 (312)
T d1qyda_ 169 -QLDGHMMPPRDKVLIYGDGNVKGIWVDEDDVGTYTIKSIDDPQTLNK-TMYIRPPMNILSQKEVIQIWERL---SEQNL 243 (312)
T ss_dssp -CTTCCSSCCSSEECCBTTSCSEEEEECHHHHHHHHHHHTTCGGGSSS-EEECCCGGGEEEHHHHHHHHHHH---HTCCC
T ss_pred -hHHHHhhhcccccccccccccccceeeHHHHHHHHHHHhcCccccCc-eEEEeCCCcCCCHHHHHHHHHHH---HCCCC
Confidence 01111123455677788999999999999999999999998776655 2456665 569999999999998 88888
Q ss_pred eeeecC
Q 011707 404 KTISVP 409 (479)
Q Consensus 404 ~~~~~~ 409 (479)
++...+
T Consensus 244 ~~~~i~ 249 (312)
T d1qyda_ 244 DKIYIS 249 (312)
T ss_dssp EECCBC
T ss_pred eEEECC
Confidence 777665
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=99.94 E-value=1.8e-27 Score=227.67 Aligned_cols=241 Identities=18% Similarity=0.207 Sum_probs=179.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|||||||||||||++++++|+++|++|++++|....... .+.......+...++.++.+|+.+..
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~d~~~~~ 68 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSN--------------SEKAQLLESFKASGANIVHGSIDDHA 68 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTT--------------HHHHHHHHHHHTTTCEEECCCTTCHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCccccc--------------hhHHHHHHhhccCCcEEEEeecccch
Confidence 6789999999999999999999999999999986543211 12222233333467899999999999
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcCCc
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEEGY 245 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e~~ 245 (479)
.+.+.++ +.+.|+|+++. .+..++.+++++++..+.. ++++.|+.+.+....
T Consensus 69 ~~~~~~~--~~~~vi~~~~~------------------~~~~~~~~~~~a~~~~~~~-~~~~~s~~~~~~~~~------- 120 (307)
T d1qyca_ 69 SLVEAVK--NVDVVISTVGS------------------LQIESQVNIIKAIKEVGTV-KRFFPSEFGNDVDNV------- 120 (307)
T ss_dssp HHHHHHH--TCSEEEECCCG------------------GGSGGGHHHHHHHHHHCCC-SEEECSCCSSCTTSC-------
T ss_pred hhhhhhh--hceeeeecccc------------------cccchhhHHHHHHHHhccc-cceeeeccccccccc-------
Confidence 9999998 89999999863 3556677889999998887 888888854432211
Q ss_pred eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchH
Q 011707 246 ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTAL 325 (479)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~ 325 (479)
....+...|...+...+. +..+.+++++++||+++||++... +
T Consensus 121 -------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~r~~~v~g~~~~~--------------------~ 163 (307)
T d1qyca_ 121 -------------HAVEPAKSVFEVKAKVRR----AIEAEGIPYTYVSSNCFAGYFLRS--------------------L 163 (307)
T ss_dssp -------------CCCTTHHHHHHHHHHHHH----HHHHHTCCBEEEECCEEHHHHTTT--------------------T
T ss_pred -------------cccccccccccccccccc----hhhccCCCceecccceecCCCccc--------------------h
Confidence 111223344444444444 556679999999999999986431 1
Q ss_pred HHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC-CCcCHHHHHHHHHHHhhhcCCcce
Q 011707 326 NRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT-EQFSVNQLAALVTKAGEKLGLDVK 404 (479)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~-~~~s~~el~~~i~~~~~~~g~~~~ 404 (479)
..+......+..+.+++++++.++|+|++|+|++++.+++++...++ .+||+++ +.+|+.|+++.+.++ +|.+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~Dva~~~~~~l~~~~~~~~-~~~~~~~~~~~s~~ei~~~~~~~---~G~~~~ 239 (307)
T d1qyca_ 164 AQAGLTAPPRDKVVILGDGNARVVFVKEEDIGTFTIKAVDDPRTLNK-TLYLRLPANTLSLNELVALWEKK---IDKTLE 239 (307)
T ss_dssp TCTTCSSCCSSEEEEETTSCCEEEEECHHHHHHHHHTTSSCGGGTTE-EEECCCGGGEEEHHHHHHHHHHH---TTSCCE
T ss_pred hhhhhhhhhcccceeeecccccccCCcHHHHHHHHHHHhcChhhcCc-eeEEeCCCCccCHHHHHHHHHHH---HCCCCc
Confidence 22333455667788888899999999999999999999998766554 3566666 679999999999999 898888
Q ss_pred eeecC
Q 011707 405 TISVP 409 (479)
Q Consensus 405 ~~~~~ 409 (479)
+...+
T Consensus 240 ~~~~~ 244 (307)
T d1qyca_ 240 KAYVP 244 (307)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 77665
|
| >d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: TAT-interacting protein TIP30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.7e-26 Score=211.58 Aligned_cols=209 Identities=12% Similarity=0.045 Sum_probs=156.0
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++|+|||||||||||++|+++|+++|. +|++++|....... .....+....+|+
T Consensus 12 m~~k~IlItGaTG~iG~~l~~~Ll~~g~~~~v~~~~R~~~~~~~-----------------------~~~~~i~~~~~D~ 68 (232)
T d2bkaa1 12 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDE-----------------------EAYKNVNQEVVDF 68 (232)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCS-----------------------GGGGGCEEEECCG
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHhCCCCCEEEEEecChhhhcc-----------------------cccceeeeeeecc
Confidence 3578999999999999999999999995 89999986432111 0114677888999
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCC
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDI 241 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~ 241 (479)
.+.+.+.++++ ++|+|||++|...... + .....++|+.++.+++++|++.+++ +|||+||.++++..
T Consensus 69 ~~~~~~~~~~~--~~d~vi~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~a~~~~v~-~fi~~Ss~~~~~~~---- 135 (232)
T d2bkaa1 69 EKLDDYASAFQ--GHDVGFCCLGTTRGKA---G---AEGFVRVDRDYVLKSAELAKAGGCK-HFNLLSSKGADKSS---- 135 (232)
T ss_dssp GGGGGGGGGGS--SCSEEEECCCCCHHHH---H---HHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCTTC----
T ss_pred ccccccccccc--cccccccccccccccc---c---hhhhhhhcccccceeeecccccCcc-ccccCCccccccCc----
Confidence 99999998888 8999999998642111 1 1335688999999999999999988 99999998766432
Q ss_pred cCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCc-eEEeecCeeecCCCCchhhhHhhhcccCCCCc
Q 011707 242 EEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIR-ATDLNQGVVYGVRTDETAMHEELCNRLDYDGV 320 (479)
Q Consensus 242 ~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~-~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~ 320 (479)
.+.|+.+|..+|+.++. .+++ ++|+||+.+||++++..
T Consensus 136 ----------------------~~~Y~~~K~~~E~~l~~----~~~~~~~IlRP~~i~G~~~~~~--------------- 174 (232)
T d2bkaa1 136 ----------------------NFLYLQVKGEVEAKVEE----LKFDRYSVFRPGVLLCDRQESR--------------- 174 (232)
T ss_dssp ----------------------SSHHHHHHHHHHHHHHT----TCCSEEEEEECCEEECTTGGGS---------------
T ss_pred ----------------------cchhHHHHHHhhhcccc----ccccceEEecCceeecCCCcCc---------------
Confidence 47899999999987643 4664 99999999999975421
Q ss_pred ccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCC
Q 011707 321 FGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFT 380 (479)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~ 380 (479)
....++....... .........||++|+|++++.++.++...+ ++.+.+
T Consensus 175 ---~~~~~~~~~~~~~-----~~~~~~~~~I~~~dvA~a~i~~~~~~~~~~---~~i~~~ 223 (232)
T d2bkaa1 175 ---PGEWLVRKFFGSL-----PDSWASGHSVPVVTVVRAMLNNVVRPRDKQ---MELLEN 223 (232)
T ss_dssp ---HHHHHHHHHHCSC-----CTTGGGGTEEEHHHHHHHHHHHHTSCCCSS---EEEEEH
T ss_pred ---HHHHHHHHHhhcc-----CCcccCCCeEEHHHHHHHHHHHHhcCccCC---eEEEcH
Confidence 2233334443322 222334467999999999999998776543 566554
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.92 E-value=5.3e-25 Score=203.52 Aligned_cols=231 Identities=16% Similarity=0.140 Sum_probs=158.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeE--EEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEV--AIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V--~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|||||||||||+++++.|+++|++| +++.|..+.. .. ...+++++.+|++
T Consensus 2 ~~~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~--------------------~~----~~~~~~~~~~d~~ 57 (252)
T d2q46a1 2 NLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGK--------------------EK----IGGEADVFIGDIT 57 (252)
T ss_dssp SCCEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHH--------------------HH----TTCCTTEEECCTT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHH--------------------Hh----ccCCcEEEEeeec
Confidence 36899999999999999999999999764 4455533211 11 1257899999999
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCccccc----------ccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSM----------IDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~----------~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~ 232 (479)
+.+.+.++++ ++|+|||+|+........ ...........+|+.|+.++++.+...+.+ .+.+.|+..
T Consensus 58 ~~~~~~~~~~--~~d~vi~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~ 134 (252)
T d2q46a1 58 DADSINPAFQ--GIDALVILTSAVPKMKPGFDPTKGGRPEFIFEDGQYPEQVDWIGQKNQIDAAKVAGVK-HIVVVGSMG 134 (252)
T ss_dssp SHHHHHHHHT--TCSEEEECCCCCCEECTTCCTTSCCCCCEECCTTCSHHHHTTHHHHHHHHHHHHHTCS-EEEEEEETT
T ss_pred cccccccccc--cceeeEEEEeeccccccccchhhhhhcccccccchhhhccccccceeecccccccccc-ccccccccc
Confidence 9999999999 899999999865322111 111123445688999999999999998887 888888866
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhh
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
.+..... ........|...+. +...+..+.|++++++||+++|||......
T Consensus 135 ~~~~~~~-------------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ilRp~~v~g~~~~~~~------ 185 (252)
T d2q46a1 135 GTNPDHP-------------------LNKLGNGNILVWKR----KAEQYLADSGTPYTIIRAGGLLDKEGGVRE------ 185 (252)
T ss_dssp TTCTTCG-------------------GGGGGGCCHHHHHH----HHHHHHHHSSSCEEEEEECEEECSCTTSSC------
T ss_pred cCCCCcc-------------------cccccccchhhhhh----hhhhhhhcccccceeecceEEECCCcchhh------
Confidence 5532210 00011233333333 334455667999999999999999743110
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC----CcCHHHH
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE----QFSVNQL 388 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~----~~s~~el 388 (479)
.+.+....+ .....+++|++|+|++++.+++++...|+ +|||+++ ..++.|+
T Consensus 186 -------------------~~~~~~~~~---~~~~~~~i~~~Dva~a~~~~l~~~~~~g~--~~~i~~~~~~~~~~~~~~ 241 (252)
T d2q46a1 186 -------------------LLVGKDDEL---LQTDTKTVPRADVAEVCIQALLFEEAKNK--AFDLGSKPEGTSTPTKDF 241 (252)
T ss_dssp -------------------EEEESTTGG---GGSSCCEEEHHHHHHHHHHHTTCGGGTTE--EEEEEECCTTTSCCCCCH
T ss_pred -------------------hhhccCccc---ccCCCCeEEHHHHHHHHHHHhCCccccCc--EEEEeeCCCCCChhHHHH
Confidence 001110001 12335789999999999999998877665 9999862 3667788
Q ss_pred HHHHHHH
Q 011707 389 AALVTKA 395 (479)
Q Consensus 389 ~~~i~~~ 395 (479)
.+++.++
T Consensus 242 ~~lf~~i 248 (252)
T d2q46a1 242 KALFSQV 248 (252)
T ss_dssp HHHHTTC
T ss_pred HHHHHHH
Confidence 7777664
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=99.91 E-value=2e-23 Score=193.49 Aligned_cols=227 Identities=15% Similarity=0.041 Sum_probs=161.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+++||+++++.|+++|++|++.++.... ..+...+..+.++.++.+|++
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~~-------------------~~~~~~~~~g~~~~~~~~Dvs 62 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPAP-------------------EAEAAIRNLGRRVLTVKCDVS 62 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCH-------------------HHHHHHHHTTCCEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchH-------------------HHHHHHHHcCCcEEEEEeeCC
Confidence 4689999999999999999999999999999999885431 111111223467899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|++|||||...... ...++++|.+++++|+.|+.++.+++. +.+.+ +||++||..
T Consensus 63 ~~~~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G-~Iv~isS~~ 141 (247)
T d2ew8a1 63 QPGDVEAFGKQVISTFGRCDILVNNAGIYPLIPFDELTFEQWKKTFEINVDSGFLMAKAFVPGMKRNGWG-RIINLTSTT 141 (247)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGG
T ss_pred CHHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChHhCCHHHhhhhheeehhhhhHHHHHHHhHHHhcCCC-Cccccccch
Confidence 999988887643 6999999999865433 334777899999999999999988774 34545 999999964
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
... +......|+.||++.+.+++.++.++ |++++.|.||.|-.+..+...
T Consensus 142 ~~~------------------------~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~--- 194 (247)
T d2ew8a1 142 YWL------------------------KIEAYTHYISTKAANIGFTRALASDLGKDGITVNAIAPSLVRTATTEASA--- 194 (247)
T ss_dssp GGS------------------------CCSSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCC------------
T ss_pred hcc------------------------cCcccccchhhhccHHHHHHHHHHHhcccCeEEEEEeeCCCCCccccccc---
Confidence 331 22336789999999999999999885 799999999998765422100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
........ ........-+...+|+|++++.++..... .|+ ++.+.++
T Consensus 195 ---------------~~~~~~~~--------~~~~~~l~r~~~pedvA~~v~fL~S~~s~~itG~--~i~vDGG 243 (247)
T d2ew8a1 195 ---------------LSAMFDVL--------PNMLQAIPRLQVPLDLTGAAAFLASDDASFITGQ--TLAVDGG 243 (247)
T ss_dssp --------------------------------CTTSSSCSCCCTHHHHHHHHHHTSGGGTTCCSC--EEEESSS
T ss_pred ---------------cchhHHHH--------HHHhccCCCCCCHHHHHHHHHHHhCchhcCCcCC--eEEECCC
Confidence 00000000 01111223456789999999998865443 455 8888775
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.91 E-value=2.6e-23 Score=191.90 Aligned_cols=219 Identities=13% Similarity=0.035 Sum_probs=163.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+++||+++++.|+++|++|++.+|.... ++...+..+.++.++.+|++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~--------------------~~~~~~~~~~~~~~~~~Dv~ 62 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEE--------------------GKAMAAELADAARYVHLDVT 62 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HHHHHHHTGGGEEEEECCTT
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--------------------HHHHHHHhhCcceEEEeecC
Confidence 4689999999999999999999999999999999986432 11121112357889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|++|||||...... ...+.++|.+++++|+.|+.++.+++. +.+.+ +||++||..
T Consensus 63 ~~~~v~~~~~~~~~~~g~idilinnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G-~Ii~isS~~ 141 (244)
T d1nffa_ 63 QPAQWKAAVDTAVTAFGGLHVLVNNAGILNIGTIEDYALTEWQRILDVNLTGVFLGIRAVVKPMKEAGRG-SIINISSIE 141 (244)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGG
T ss_pred CHHHHHHHHHHHHHHhCCCeEEEECCcccCCCchhhCCHHHHhHHhhcccchhhHHHHHHHhHHHhcCcc-eEEeccccc
Confidence 999988877654 6999999999865433 233667889999999999999988663 33444 999999964
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.+|++.+.+++.++.++ |++++.|.||.|..|..+.
T Consensus 142 ~~~------------------------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~----- 192 (244)
T d1nffa_ 142 GLA------------------------GTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDW----- 192 (244)
T ss_dssp GTS------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSGGGTT-----
T ss_pred ccc------------------------ccccccchhhHHHHHHHHHHHHHHHhcccCEEEEEEeeCCccChhHhh-----
Confidence 331 22336899999999999999999885 7999999999886553110
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. .... ......-+...+|+|++++.++..... .|+ ++.+.++
T Consensus 193 ----------------------~-~~~~-----~~~pl~R~~~p~diA~~v~fL~s~~s~~itG~--~i~vDGG 236 (244)
T d1nffa_ 193 ----------------------V-PEDI-----FQTALGRAAEPVEVSNLVVYLASDESSYSTGA--EFVVDGG 236 (244)
T ss_dssp ----------------------S-CTTC-----SCCSSSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ----------------------h-hHHH-----HhccccCCCCHHHHHHHHHHHhChhhCCCcCC--EEEECCC
Confidence 0 0000 001223478899999999999865433 455 8988765
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.91 E-value=7.4e-24 Score=194.97 Aligned_cols=217 Identities=15% Similarity=0.115 Sum_probs=159.6
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+++++|++|||||+++||.+++++|+++|++|++++|.... ..++..+.+|+
T Consensus 3 psl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~~~----------------------------~~~~~~~~~Dv 54 (237)
T d1uzma1 3 PPFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGSGA----------------------------PKGLFGVEVDV 54 (237)
T ss_dssp CCCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSSCC----------------------------CTTSEEEECCT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcch----------------------------hcCceEEEEec
Confidence 36789999999999999999999999999999999986431 14567889999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~ 231 (479)
+|+++++++++.. ++|++|||||...... ...+.++|.+++++|+.++..+.+++ ++.+.+ +||++||.
T Consensus 55 ~~~~~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g-~Iv~isS~ 133 (237)
T d1uzma1 55 TDSDAVDRAFTAVEEHQGPVEVLVSNAGLSADAFLMRMTEEKFEKVINANLTGAFRVAQRASRSMQRNKFG-RMIFIGSV 133 (237)
T ss_dssp TCHHHHHHHHHHHHHHHSSCSEEEEECSCCC-----CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCC
T ss_pred CCHHHHHHHHHHHHHhcCCceEEEeeecccccccHhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccCCC-ceEEEcch
Confidence 9999988877654 6999999999865433 33366788999999999999888765 344555 99999995
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
.... +......|+.||++.+.+++.++.++ |++++.|.||.|.-+...
T Consensus 134 ~~~~------------------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~----- 184 (237)
T d1uzma1 134 SGLW------------------------GIGNQANYAASKAGVIGMARSIARELSKANVTANVVAPGYIDTDMTR----- 184 (237)
T ss_dssp CC-----------------------------CCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH-----
T ss_pred hhcc------------------------CCcccHHHHHHHHHHHHHHHHHHhhhhcCCceeeeeeeCcCCChhhh-----
Confidence 4331 12236789999999999999999884 899999999998644210
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.............. ...-+...+|+|.+++.++..... .|+ ++.+.|+
T Consensus 185 --------------~~~~~~~~~~~~~~---------pl~R~~~pedvA~~v~fL~S~~s~~itG~--~i~vdGG 234 (237)
T d1uzma1 185 --------------ALDERIQQGALQFI---------PAKRVGTPAEVAGVVSFLASEDASYISGA--VIPVDGG 234 (237)
T ss_dssp --------------HSCHHHHHHHGGGC---------TTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred --------------ccCHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhCchhcCCcCC--eEEECCC
Confidence 00011222222221 123467899999999999865443 455 8888764
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=99.91 E-value=4.4e-23 Score=191.52 Aligned_cols=223 Identities=14% Similarity=0.064 Sum_probs=162.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++||++|||||+++||.+++++|+++|++|++.+|.... ++...+..+.++.++.+|++|
T Consensus 3 L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~--------------------~~~~~~~~~~~~~~~~~Dv~~ 62 (254)
T d1hdca_ 3 LSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLDEE--------------------GAATARELGDAARYQHLDVTI 62 (254)
T ss_dssp CCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HHHHHHTTGGGEEEEECCTTC
T ss_pred CCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHH--------------------HHHHHHHhCCceEEEEcccCC
Confidence 689999999999999999999999999999999986431 112222224578999999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|++|||||...... ...+.++|.+++++|+.|+.++.+++. +.+.+ +||++||...
T Consensus 63 ~~~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~~~G-~II~isS~~~ 141 (254)
T d1hdca_ 63 EEDWQRVVAYAREEFGSVDGLVNNAGISTGMFLETESVERFRKVVEINLTGVFIGMKTVIPAMKDAGGG-SIVNISSAAG 141 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCccEEEecCccccccccccccccccchhhhHHhhHHHHHHHHHHHHHhhcCCC-eecccccchh
Confidence 99998887653 7999999999865433 344667889999999999999988774 34445 9999999643
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +......|+.+|++.+.+++.++.++ |+++++|.||.|.-+.
T Consensus 142 ~~------------------------~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~v~T~~--------- 188 (254)
T d1hdca_ 142 LM------------------------GLALTSSYGASKWGVRGLSKLAAVELGTDRIRVNSVHPGMTYTPM--------- 188 (254)
T ss_dssp TS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHH---------
T ss_pred cc------------------------cccchhhHHHHHHHHHHHHHHHHHHhCCCceEEEEeeeCcccCcc---------
Confidence 31 22336899999999999999999885 7999999999885431
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceecc-ccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGY-LDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.........-.... .....-+ ...+|+|.+++.++..... .|+ ++.+.++
T Consensus 189 ------------------~~~~~~~~~~~~~~-~~pl~R~g~~PedvA~~v~fL~S~~a~~itG~--~i~vDGG 241 (254)
T d1hdca_ 189 ------------------TAETGIRQGEGNYP-NTPMGRVGNEPGEIAGAVVKLLSDTSSYVTGA--ELAVDGG 241 (254)
T ss_dssp ------------------HHHHTCCCSTTSCT-TSTTSSCB-CHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ------------------chhcCHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHhchhhCCCCCc--eEEeCCC
Confidence 11111111000000 0111122 3579999999999865443 455 9999875
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=8.8e-24 Score=196.73 Aligned_cols=231 Identities=13% Similarity=0.060 Sum_probs=170.0
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+.++||++|||||+++||.+++++|+++|++|++.+|.... +.+..+.+.. .+.++.++.+|+
T Consensus 7 m~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~----------------~~~~~~~l~~-~g~~~~~~~~Dv 69 (255)
T d1fmca_ 7 LRLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINADA----------------ANHVVDEIQQ-LGGQAFACRCDI 69 (255)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCHHH----------------HHHHHHHHHH-TTCCEEEEECCT
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHH-cCCcEEEEEccC
Confidence 45789999999999999999999999999999999985432 2222333333 245788999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
+|+++++++++.. ++|++|||||.......+.+.++|.+++++|+.|+.++.+++.. .+.+ +||++||..
T Consensus 70 s~~~~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~e~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g-~Ii~isS~~ 148 (255)
T d1fmca_ 70 TSEQELSALADFAISKLGKVDILVNNAGGGGPKPFDMPMADFRRAYELNVFSFFHLSQLVAPEMEKNGGG-VILTITSMA 148 (255)
T ss_dssp TCHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGG
T ss_pred CCHHHHHHHHHHHHHHcCCCCEeeeCCcCCCCCcccCCHHHHHHHHHHHHHHhhhhHHHHHhhhcccccc-ccccccccc
Confidence 9999888877653 79999999998765444456778999999999999999887643 3444 899999854
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.+|++.+.+++.++.++ |+++++|.||.|-.+...
T Consensus 149 ~~~------------------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~------ 198 (255)
T d1fmca_ 149 AEN------------------------KNINMTSYASSKAAASHLVRNMAFDLGEKNIRVNGIAPGAILTDALK------ 198 (255)
T ss_dssp GTC------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHH------
T ss_pred hhc------------------------cccccccchhHHHHHHHHHHHHHHHhCccCeEEEEeeeCcCcChHhh------
Confidence 331 22346899999999999999999884 799999999998544210
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCCc
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQF 383 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~~ 383 (479)
.. .-......+....| ..-+...+|+|++++.++..... .|+ ++.+.|+.+
T Consensus 199 ~~------------~~~e~~~~~~~~~p---------l~R~g~pedvA~~v~fL~S~~s~~itG~--~i~vDGG~~ 251 (255)
T d1fmca_ 199 SV------------ITPEIEQKMLQHTP---------IRRLGQPQDIANAALFLCSPAASWVSGQ--ILTVSGGGV 251 (255)
T ss_dssp TT------------CCHHHHHHHHHTCS---------SCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTSC
T ss_pred cc------------CCHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCchhcCCcCC--EEEECcCcc
Confidence 00 00122333333322 22457789999999999865443 455 999988653
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=5e-23 Score=190.06 Aligned_cols=221 Identities=17% Similarity=0.129 Sum_probs=164.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+++||.+++++|+++|++|++.+|..... .+..+ ..++.++.+|++
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~~~l----------------~~~~~------~~~~~~~~~Dv~ 59 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEEGPL----------------REAAE------AVGAHPVVMDVA 59 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHH------TTTCEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHH------HcCCeEEEEecC
Confidence 46899999999999999999999999999999999864321 11111 125778999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHHHc----CCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMKEF----RQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|++|||||....... ..+.++|.+++++|+.|+.++.+++.+. +.. +++++||.+
T Consensus 60 ~~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~~-~i~~~ss~~ 138 (242)
T d1ulsa_ 60 DPASVERGFAEALAHLGRLDGVVHYAGITRDNFHWKMPLEDWELVLRVNLTGSFLVAKAASEAMREKNPG-SIVLTASRV 138 (242)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCE-EEEEECCGG
T ss_pred CHHHHHHHHHHHHHhcCCceEEEECCcccccCchhhCcchhhhccccccchhhhhhhhhccccccccccc-eeeeecccc
Confidence 999998887654 69999999998754433 3466789999999999999999887543 333 777777755
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
..+. .....|+.+|++.+.+.+.++.++ |++++.|.||.|--+....
T Consensus 139 ~~~~-------------------------~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~----- 188 (242)
T d1ulsa_ 139 YLGN-------------------------LGQANYAASMAGVVGLTRTLALELGRWGIRVNTLAPGFIETRMTAK----- 188 (242)
T ss_dssp GGCC-------------------------TTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTTSS-----
T ss_pred ccCC-------------------------CCCcchHHHHHHHHHHHHHHHHHHhhhCcEEEEEeeCcccChhhhc-----
Confidence 4432 236789999999999999999885 7999999999997664321
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.............| ..-+...+|+|.+++.++..... .|+ ++.+.++
T Consensus 189 --------------~~~~~~~~~~~~~p---------l~R~~~pedia~~v~fL~S~~s~~itG~--~i~vDGG 237 (242)
T d1ulsa_ 189 --------------VPEKVREKAIAATP---------LGRAGKPLEVAYAALFLLSDESSFITGQ--VLFVDGG 237 (242)
T ss_dssp --------------SCHHHHHHHHHTCT---------TCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred --------------CCHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHhchhhCCCCCc--EEEECCC
Confidence 11223333333322 22456789999999999865443 455 8888765
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=7.5e-24 Score=195.79 Aligned_cols=223 Identities=13% Similarity=0.079 Sum_probs=164.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++||++|||||+++||++++++|+++|++|++.+|.... ++...+..+.++..+.+|++|
T Consensus 2 l~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~~~--------------------l~~~~~~~~~~~~~~~~Dv~~ 61 (243)
T d1q7ba_ 2 FEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSENG--------------------AQAISDYLGANGKGLMLNVTD 61 (243)
T ss_dssp CTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSHHH--------------------HHHHHHHHGGGEEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHH--------------------HHHHHHHhCCCCcEEEEEecC
Confidence 579999999999999999999999999999999986432 111111123468889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|++|||||....... ..+.++|.+++++|+.|+..+.+++. +.+.+ +||++||...
T Consensus 62 ~~~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G-~II~isS~~~ 140 (243)
T d1q7ba_ 62 PASIESVLEKIRAEFGEVDILVNNAGITRDNLLMRMKDEEWNDIIETNLSSVFRLSKAVMRAMMKKRHG-RIITIGSVVG 140 (243)
T ss_dssp HHHHHHHHHHHHHHTCSCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCHHH
T ss_pred HHHhhhhhhhhhcccCCcceehhhhhhccccccccccccccccccceeechhhhhHHHHHHHHHHcCCC-Eeeeecchhh
Confidence 99888877653 69999999998765443 34667889999999999999998874 34445 9999999543
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
.. +......|+.||++.+.+++.++.++ |++++.+.||.|--+...
T Consensus 141 ~~------------------------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~------- 189 (243)
T d1q7ba_ 141 TM------------------------GNGGQANYAAAKAGLIGFSKSLAREVASRGITVNVVAPGFIETDMTR------- 189 (243)
T ss_dssp HH------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHH-------
T ss_pred cC------------------------CCCCCHHHHHHHHHHHHHHHHHHHHhCccCeEEEEEecceEechhhh-------
Confidence 31 12236899999999999999999884 899999999988543210
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.........+....| ..-+...+|+|.+++.++..... .|+ ++++.++
T Consensus 190 ------------~~~~~~~~~~~~~~p---------l~R~~~pedvA~~v~fL~S~~s~~itGq--~i~vdGG 239 (243)
T d1q7ba_ 190 ------------ALSDDQRAGILAQVP---------AGRLGGAQEIANAVAFLASDEAAYITGE--TLHVNGG 239 (243)
T ss_dssp ------------TSCHHHHHHHHTTCT---------TSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ------------hhhhhHHHHHHhcCC---------CCCCCCHHHHHHHHHHHhCchhcCCcCC--eEEECCC
Confidence 011122223332222 23467899999999999865443 455 8988775
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=4.3e-23 Score=191.58 Aligned_cols=230 Identities=14% Similarity=0.110 Sum_probs=167.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+++||++++++|+++|++|++++|.... +.+..+.+.+..+.++.++.+|++|
T Consensus 3 l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~~~----------------~~~~~~~l~~~~g~~~~~~~~Dv~~ 66 (251)
T d1vl8a_ 3 LRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNLEE----------------ASEAAQKLTEKYGVETMAFRCDVSN 66 (251)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHHHHCCCEEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHHHhCCcEEEEEccCCC
Confidence 679999999999999999999999999999999986542 1222333333335678899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|++|||||...... ...+.++|.+++++|+.|+..+.+++.. .+.+ ++|++||...
T Consensus 67 ~~~v~~~~~~~~~~~g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G-~Ii~i~S~~~ 145 (251)
T d1vl8a_ 67 YEEVKKLLEAVKEKFGKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNP-SIINIGSLTV 145 (251)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSC-EEEEECCGGG
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccc-cccccccchh
Confidence 99988887653 6999999999765433 3347778999999999999999988754 3344 8999988532
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
... +......|+.+|++.+.+++.++.++ |++++.|.||.|-.+......
T Consensus 146 ~~~-----------------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~i~T~~~~~~~---- 198 (251)
T d1vl8a_ 146 EEV-----------------------TMPNISAYAASKGGVASLTKALAKEWGRYGIRVNVIAPGWYRTKMTEAVF---- 198 (251)
T ss_dssp TCC-----------------------CSSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSTTTHHHH----
T ss_pred ccc-----------------------cCccccchHHHHHhHHHHHHHHHHHhcccCeEEEEEeeCcccCHHHHhcc----
Confidence 110 11236789999999999999999885 799999999999766432100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. -......+....| ..-+...+|+|++++.++..... .|+ ++.+.++
T Consensus 199 -----------~--~~~~~~~~~~~~p---------l~R~~~pedvA~~v~fL~S~~a~~itG~--~i~vDGG 247 (251)
T d1vl8a_ 199 -----------S--DPEKLDYMLKRIP---------LGRTGVPEDLKGVAVFLASEEAKYVTGQ--IIFVDGG 247 (251)
T ss_dssp -----------T--CHHHHHHHHHTCT---------TSSCBCGGGGHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -----------C--CHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHhCchhCCCcCc--EEEeCcC
Confidence 0 0122333333322 22356789999999998865443 455 8888765
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.90 E-value=5.5e-23 Score=190.95 Aligned_cols=227 Identities=14% Similarity=0.089 Sum_probs=167.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+++||.+++++|+++|++|++++|.... +.+..+.+.. .+.++..+.+|++
T Consensus 7 ~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~~~----------------l~~~~~~l~~-~g~~~~~~~~Dvt 69 (251)
T d2c07a1 7 CGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQKS----------------CDSVVDEIKS-FGYESSGYAGDVS 69 (251)
T ss_dssp CCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSHHH----------------HHHHHHHHHT-TTCCEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH----------------HHHHHHHHHh-cCCcEEEEEccCC
Confidence 4679999999999999999999999999999999986442 2222333322 2457899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|++|||||...... ...+.++|.+++++|+.|+..+.+++. +.+.+ +||++||..
T Consensus 70 ~~~~v~~~~~~~~~~~g~iDilvnnag~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G-~IVnisS~~ 148 (251)
T d2c07a1 70 KKEEISEVINKILTEHKNVDILVNNAGITRDNLFLRMKNDEWEDVLRTNLNSLFYITQPISKRMINNRYG-RIINISSIV 148 (251)
T ss_dssp CHHHHHHHHHHHHHHCSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTTHHHHHHHHHHHHHHHHTCE-EEEEECCTH
T ss_pred CHHHHHHHHHHHHHhcCCceeeeeccccccccccccccHHHHhhhheeeehhhhhhhhhcCcccccCCCe-EEEEECCHH
Confidence 999988887654 7999999999865433 333567889999999999999988763 34555 999999954
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
-.. +......|+.||++.+.+++.++.++ |++++.|.||.|-.+....
T Consensus 149 ~~~------------------------~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~V~PG~v~T~~~~~----- 199 (251)
T d2c07a1 149 GLT------------------------GNVGQANYSSSKAGVIGFTKSLAKELASRNITVNAIAPGFISSDMTDK----- 199 (251)
T ss_dssp HHH------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCC----------
T ss_pred hcC------------------------CCCCCHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCCEecccccc-----
Confidence 321 11236789999999999999999885 7999999999997664321
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
........+....| ..-+...+|+|++++.++..... .|+ ++.+.|+
T Consensus 200 --------------~~~~~~~~~~~~~p---------l~R~~~pedvA~~v~fL~S~~s~~itG~--~i~vDGG 248 (251)
T d2c07a1 200 --------------ISEQIKKNIISNIP---------AGRMGTPEEVANLACFLSSDKSGYINGR--VFVIDGG 248 (251)
T ss_dssp --------------CCHHHHHHHHTTCT---------TSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred --------------cCHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCchhCCCcCc--EEEECCC
Confidence 11233333333322 22467899999999999865443 455 8888765
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=99.90 E-value=2.5e-23 Score=194.59 Aligned_cols=233 Identities=12% Similarity=0.031 Sum_probs=164.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++||++|||||+++||.+++++|+++|++|++.+|..... +.+..+.+....+.++.++.+|++|
T Consensus 2 L~gK~alITGas~GIG~aiA~~la~~Ga~V~~~~r~~~~~---------------~~~~~~~~~~~~g~~~~~~~~Dv~~ 66 (260)
T d1x1ta1 2 LKGKVAVVTGSTSGIGLGIATALAAQGADIVLNGFGDAAE---------------IEKVRAGLAAQHGVKVLYDGADLSK 66 (260)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEECCSCHHH---------------HHHHHHHHHHHHTSCEEEECCCTTS
T ss_pred CCcCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCcHHH---------------HHHHHHHHHHhcCCcEEEEECCCCC
Confidence 5799999999999999999999999999999999864321 1122222323335678899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|++|||||...... ...+.++|.+++++|+.|+.++.+++ ++.+.+ +||++||...
T Consensus 67 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G-~Iv~isS~~~ 145 (260)
T d1x1ta1 67 GEAVRGLVDNAVRQMGRIDILVNNAGIQHTALIEDFPTEKWDAILALNLSAVFHGTAAALPHMKKQGFG-RIINIASAHG 145 (260)
T ss_dssp HHHHHHHHHHHHHHHSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGG
T ss_pred HHHHHHHHHHHHHHhCCCcEEEeecccccCCchhhhhHHhhhhhhhccccccccccchhhhhHhhcCCc-eEeecccccc
Confidence 99998888654 6999999999875443 33467789999999999999988776 344555 9999999543
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
.. +......|+.+|++.+.+++.++.++ |++++.|.||.|--+..+.
T Consensus 146 ~~------------------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~------ 195 (260)
T d1x1ta1 146 LV------------------------ASANKSAYVAAKHGVVGFTKVTALETAGQGITANAICPGWVRTPLVEK------ 195 (260)
T ss_dssp TS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCC-----------
T ss_pred ee------------------------ccCCcchhhhhhhhHHHhHHHHHHHhchhCcEEEEEecCCCCChhhhh------
Confidence 31 22336789999999999999999985 7999999999986553211
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCe-------EEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPL-------TVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.+......... ..+.......-+...+|+|++++.++..... .|+ ++++.|+
T Consensus 196 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~Pl~R~g~pediA~~v~fL~S~~a~~itG~--~i~vDGG 256 (260)
T d1x1ta1 196 -----------------QISALAEKNGVDQETAARELLSEKQPSLQFVTPEQLGGTAVFLASDAAAQITGT--TVSVDGG 256 (260)
T ss_dssp ------------------------------------CHHHHCTTCCCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -----------------hhhhhhhhcCCChHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHhChhhCCCcCC--EEEECcc
Confidence 11110000000 0011111223467899999999999865443 455 8888765
|
| >d2a35a1 c.2.1.2 (A:4-215) Hypothetical protein PA4017 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein PA4017 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.90 E-value=5.6e-24 Score=193.13 Aligned_cols=191 Identities=12% Similarity=0.046 Sum_probs=132.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.|+|||||||||||++|+++|+++|+ +|+++.|..... ... +..++.|
T Consensus 2 ~KkIlItGatG~iG~~lv~~L~~~~~~~~v~~~~r~~~~~---------------------------~~~---~~~~~~d 51 (212)
T d2a35a1 2 PKRVLLAGATGLTGEHLLDRILSEPTLAKVIAPARKALAE---------------------------HPR---LDNPVGP 51 (212)
T ss_dssp CCEEEEECTTSHHHHHHHHHHHHCTTCCEEECCBSSCCCC---------------------------CTT---EECCBSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHhCCCeEEEEEEeCCchhh---------------------------ccc---ccccccc
Confidence 48999999999999999999999998 566555432100 012 2344445
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcC
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEE 243 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e 243 (479)
..++...+.. .+|+|||++|........ ...+.++|+.++.+++++|++.+++ +|+++||.++++..
T Consensus 52 ~~~~~~~~~~-~~d~vi~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~a~~~~v~-~~i~~Ss~~~~~~~------ 118 (212)
T d2a35a1 52 LAELLPQLDG-SIDTAFCCLGTTIKEAGS-----EEAFRAVDFDLPLAVGKRALEMGAR-HYLVVSALGADAKS------ 118 (212)
T ss_dssp HHHHGGGCCS-CCSEEEECCCCCHHHHSS-----HHHHHHHHTHHHHHHHHHHHHTTCC-EEEEECCTTCCTTC------
T ss_pred hhhhhhcccc-chheeeeeeeeecccccc-----ccccccchhhhhhhccccccccccc-cccccccccccccc------
Confidence 4444444432 689999999864322111 2346789999999999999999998 99999998876533
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCC-ceEEeecCeeecCCCCchhhhHhhhcccCCCCccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGI-RATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFG 322 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl-~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~ 322 (479)
.+.|..+|..+|+.++ +.++ +++|+||+.|||+.+.....
T Consensus 119 --------------------~~~y~~~K~~~E~~l~----~~~~~~~~I~Rp~~v~G~~~~~~~~--------------- 159 (212)
T d2a35a1 119 --------------------SIFYNRVKGELEQALQ----EQGWPQLTIARPSLLFGPREEFRLA--------------- 159 (212)
T ss_dssp --------------------SSHHHHHHHHHHHHHT----TSCCSEEEEEECCSEESTTSCEEGG---------------
T ss_pred --------------------ccchhHHHHHHhhhcc----ccccccceeeCCcceeCCcccccHH---------------
Confidence 4789999999998774 3466 59999999999998653210
Q ss_pred chHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 323 TALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
. .....-..+.+ ..+..||++|+|++++.+++++..
T Consensus 160 ----~----~~~~~~~~~~~---~~~~~i~v~DvA~ai~~~~~~~~~ 195 (212)
T d2a35a1 160 ----E----ILAAPIARILP---GKYHGIEACDLARALWRLALEEGK 195 (212)
T ss_dssp ----G----GTTCCCC-------CHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred ----H----HHHHHHhhccC---CCCcEEEHHHHHHHHHHHHcCCCC
Confidence 0 00111111111 224569999999999999987654
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=99.90 E-value=8.3e-23 Score=190.40 Aligned_cols=235 Identities=15% Similarity=0.137 Sum_probs=166.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc-cCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS-LTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~~Dl~ 162 (479)
+++|++|||||+++||+.++++|+++|++|++.+|..... .+..+.... ..+.++..+.+|++
T Consensus 2 l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~l----------------~~~~~~~~~~~~~~~~~~~~~Dvt 65 (258)
T d1iy8a_ 2 FTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSSEGL----------------EASKAAVLETAPDAEVLTTVADVS 65 (258)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHHCTTCCEEEEECCTT
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHhhCCCCeEEEEeccCC
Confidence 5799999999999999999999999999999999865421 112222222 23357889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~ 231 (479)
|+++++++++.. ++|++|||||+.... ....+.++|.+++++|+.|+.++.+++. +.+.+ +||++||.
T Consensus 66 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G-~Ii~isS~ 144 (258)
T d1iy8a_ 66 DEAQVEAYVTATTERFGRIDGFFNNAGIEGKQNPTESFTAAEFDKVVSINLRGVFLGLEKVLKIMREQGSG-MVVNTASV 144 (258)
T ss_dssp SHHHHHHHHHHHHHHHSCCSEEEECCCCCCCCBCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCCEEEECCcccccCCchhhhhhhHHHHHhhhhccchhhhhhhhHhhhhhhcCC-CCcccccH
Confidence 999988887653 699999999975432 2334677899999999999999998773 33445 99999995
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
...- +......|+.+|++.+.+++.++.++ ||+++.|.||.|..|...
T Consensus 145 ~~~~------------------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~i~PG~v~T~~~~----- 195 (258)
T d1iy8a_ 145 GGIR------------------------GIGNQSGYAAAKHGVVGLTRNSAVEYGRYGIRINAIAPGAIWTPMVE----- 195 (258)
T ss_dssp GGTS------------------------BCSSBHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSHHHH-----
T ss_pred hhcc------------------------CCCCchHHHHHHHHHHHHHHHHHHHhCccCceEEEEeeCcccCHHHH-----
Confidence 4321 22236899999999999999999985 799999999998654210
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
....... ......+...+....| ..-+...+|+|++++.++..... .|+ ++.+.++
T Consensus 196 -~~~~~~~-----~~~~~~~~~~~~~~~p---------l~R~~~p~dvA~~v~fL~S~~s~~itG~--~i~VDGG 253 (258)
T d1iy8a_ 196 -NSMKQLD-----PENPRKAAEEFIQVNP---------SKRYGEAPEIAAVVAFLLSDDASYVNAT--VVPIDGG 253 (258)
T ss_dssp -HHHHHHC-----TTCHHHHHHHHHTTCT---------TCSCBCHHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred -HHHhhcC-----cccHHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCchhcCCcCc--eEEcCcc
Confidence 0000000 0001222333333222 23467899999999999865443 454 8888775
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=99.90 E-value=2.7e-23 Score=192.52 Aligned_cols=227 Identities=13% Similarity=0.037 Sum_probs=161.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.++||++|||||+++||.++++.|+++|++|++.+|.... .+..+. .+..++++|++
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~~-----------------~~~~~~------~~~~~~~~Dv~ 58 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPEG-----------------KEVAEA------IGGAFFQVDLE 58 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTTH-----------------HHHHHH------HTCEEEECCTT
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH-----------------HHHHHH------cCCeEEEEeCC
Confidence 3689999999999999999999999999999999985431 011111 14567899999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|.++++++++.. ++|++|||||...... ...+.++|.+++++|+.|+.++.+++.. .+.+ +||++||..
T Consensus 59 ~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G-~Ii~isS~~ 137 (248)
T d2d1ya1 59 DERERVRFVEEAAYALGRVDVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGG-AIVNVASVQ 137 (248)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCE-EEEEECCGG
T ss_pred CHHHHHHHHHHHHHhcCCCCeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccc-ccccccccc
Confidence 999888877653 6999999999865433 3346678899999999999999988843 3444 999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+. +......|+.+|++.+.+++.++.++ |++++.+.||.|-.|....
T Consensus 138 ~~~------------------------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~----- 188 (248)
T d2d1ya1 138 GLF------------------------AEQENAAYNASKGGLVNLTRSLALDLAPLRIRVNAVAPGAIATEAVLE----- 188 (248)
T ss_dssp GTS------------------------BCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCHHHHH-----
T ss_pred ccc------------------------cccccchhHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCchHHH-----
Confidence 431 22346899999999999999999985 8999999999885441000
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.... ......+...+. +.....-+...+|++++++.++..... .|+ ++++.++
T Consensus 189 -~~~~-------~~~~~~~~~~~~---------~~~pl~R~~~pedia~~v~fL~S~~s~~itG~--~i~vDGG 243 (248)
T d2d1ya1 189 -AIAL-------SPDPERTRRDWE---------DLHALRRLGKPEEVAEAVLFLASEKASFITGA--ILPVDGG 243 (248)
T ss_dssp -HHC---------------CHHHH---------TTSTTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -Hhhc-------CCCHHHHHHHHH---------hcCCCCCCcCHHHHHHHHHHHhCchhcCCCCc--EEEcCcC
Confidence 0000 000000111111 111223467899999999999865443 455 8988765
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=99.90 E-value=4.5e-23 Score=192.45 Aligned_cols=230 Identities=14% Similarity=0.038 Sum_probs=166.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+++||.+++++|+++|++|++.+|..... +.+..+.+.. .+.++..+.+|++|
T Consensus 5 L~gK~alITGas~GIG~aia~~la~~G~~Vv~~~r~~~~~---------------~~~~~~~~~~-~g~~~~~~~~Dvt~ 68 (261)
T d1geea_ 5 LEGKVVVITGSSTGLGKSMAIRFATEKAKVVVNYRSKEDE---------------ANSVLEEIKK-VGGEAIAVKGDVTV 68 (261)
T ss_dssp GTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH---------------HHHHHHHHHH-TTCEEEEEECCTTS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcHHH---------------HHHHHHHHHh-cCCcEEEEEccCCC
Confidence 6799999999999999999999999999999999864321 1112222222 24578899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE 233 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v 233 (479)
+++++++++.. ++|++|||||...... ...+.++|.+++++|+.|+.++.+++. +.+.+.+||++||...
T Consensus 69 ~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g~~Iv~isS~~~ 148 (261)
T d1geea_ 69 ESDVINLVQSAIKEFGKLDVMINNAGLENPVSSHEMSLSDWNKVIDTNLTGAFLGSREAIKYFVENDIKGTVINMSSVHE 148 (261)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCCEEEEECCGGG
T ss_pred HHHHHHHHHHHHHHhCCCCEeeccceecCCcchhhcCHHHHHHHHHHhcccchhHHHHHhhhhccccccccccccccchh
Confidence 99988887653 7999999999865433 334777899999999999999988763 3344436999998543
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
.. +......|+.+|++.+.+++.++.++ |+++++|.||.|.-|......
T Consensus 149 ~~------------------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~PG~v~T~~~~~~~---- 200 (261)
T d1geea_ 149 KI------------------------PWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKF---- 200 (261)
T ss_dssp TS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCSGGGHHHH----
T ss_pred cc------------------------cCccccccccCCccchhhHHHHHHHhhhhCcEEEEEeeCcCcCHhHhhhc----
Confidence 21 22336889999999999999999885 799999999998655321100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.-......+....| ..-+...+|+|++++.++..... .|+ ++.+.++
T Consensus 201 -------------~~~~~~~~~~~~~p---------l~R~~~pediA~~v~fL~S~~s~~itG~--~i~vDGG 249 (261)
T d1geea_ 201 -------------ADPEQRADVESMIP---------MGYIGEPEEIAAVAAWLASSEASYVTGI--TLFADGG 249 (261)
T ss_dssp -------------HSHHHHHHHHTTCT---------TSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -------------CCHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHhCchhcCCcCC--eEEECCC
Confidence 00112222222222 23467889999999999865443 455 8998875
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.90 E-value=4.6e-23 Score=190.28 Aligned_cols=226 Identities=14% Similarity=0.089 Sum_probs=165.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.++||++|||||+++||++++++|+++|++|++++|.... +.+..++ . .++..+.+|++
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~----------------l~~~~~~---~--~~~~~~~~Dv~ 60 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTNSD----------------LVSLAKE---C--PGIEPVCVDLG 60 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHH---S--TTCEEEECCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHh---c--CCCeEEEEeCC
Confidence 4689999999999999999999999999999999986431 1111111 1 46888999999
Q ss_pred ChHHHHHHhhhc-CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccccccC
Q 011707 163 DFEFLSESFKSF-EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 163 d~~~~~~~~~~~-~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v~g~ 236 (479)
|+++++++++++ ++|++|||||...... ...++++|..++++|+.++..+.+++.. .+.+.++|++||...+.
T Consensus 61 ~~~~v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~ii~isS~~~~~- 139 (242)
T d1cyda_ 61 DWDATEKALGGIGPVDLLVNNAALVIMQPFLEVTKEAFDRSFSVNLRSVFQVSQMVARDMINRGVPGSIVNVSSMVAHV- 139 (242)
T ss_dssp CHHHHHHHHTTCCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-
T ss_pred CHHHHHHHHHHcCCCeEEEECCccccchhHHHHHHHHHHHHHHHHhccchHHHHHhchhhhhhcccCcccccchhhccc-
Confidence 999999999876 5999999999865433 3347778899999999999999887643 23323899999965332
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
+......|+.+|++.+.+++.++.++ |+++++|.||.|..+.... +..
T Consensus 140 -----------------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrvN~I~PG~i~T~~~~~------~~~ 190 (242)
T d1cyda_ 140 -----------------------TFPNLITYSSTKGAMTMLTKAMAMELGPHKIRVNSVNPTVVLTDMGKK------VSA 190 (242)
T ss_dssp -----------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBTTHHHHH------HTC
T ss_pred -----------------------cCCccccccchHHHHHHHHHHHHHHhCccCeecccCCCCCccCHHHHh------hcC
Confidence 22336889999999999999999985 7999999999886542110 000
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
-..+...+....| ..-+...+|+|++++.++..... .|+ ++.+.++
T Consensus 191 -----------~~~~~~~~~~~~p---------l~R~~~peeva~~v~fL~S~~s~~itG~--~i~vDGG 238 (242)
T d1cyda_ 191 -----------DPEFARKLKERHP---------LRKFAEVEDVVNSILFLLSDRSASTSGG--GILVDAG 238 (242)
T ss_dssp -----------CHHHHHHHHHHST---------TSSCBCHHHHHHHHHHHHSGGGTTCCSS--EEEESTT
T ss_pred -----------CHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCchhcCcCCc--eEEeCcc
Confidence 0122222222222 23467899999999999865443 455 8888775
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.6e-22 Score=186.87 Aligned_cols=226 Identities=15% Similarity=0.103 Sum_probs=165.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.++||++|||||+++||.+++++|+++|++|++++|.... +.+..++. .++..+.+|++
T Consensus 4 ~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~~~----------------l~~~~~~~-----~~~~~~~~Dv~ 62 (244)
T d1pr9a_ 4 FLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQAD----------------LDSLVREC-----PGIEPVCVDLG 62 (244)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHS-----TTCEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH----------------HHHHHHhc-----CCCeEEEEeCC
Confidence 4689999999999999999999999999999999986432 11111111 36788999999
Q ss_pred ChHHHHHHhhhc-CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccccccC
Q 011707 163 DFEFLSESFKSF-EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 163 d~~~~~~~~~~~-~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v~g~ 236 (479)
|+++++++++++ ++|++|||||...... ...+.++|.+++++|+.++..+.+++.+ .+...+||++||.....
T Consensus 63 d~~~v~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~g~Ii~isS~~~~~- 141 (244)
T d1pr9a_ 63 DWEATERALGSVGPVDLLVNNAAVALLQPFLEVTKEAFDRSFEVNLRAVIQVSQIVARGLIARGVPGAIVNVSSQCSQR- 141 (244)
T ss_dssp CHHHHHHHHTTCCCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCGGGTS-
T ss_pred CHHHHHHHHHHhCCceEEEeccccccccchhhhhHHHHHHHHHHhhhhhhHHHHHhhhHHHHhCCcceEeecccccccc-
Confidence 999999999876 5999999999866543 3346678999999999999999887643 22223999999964332
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
+......|+.||++.+.+++.++.++ |++++.|.||.|.-+.....
T Consensus 142 -----------------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~~~-------- 190 (244)
T d1pr9a_ 142 -----------------------AVTNHSVYCSTKGALDMLTKVMALELGPHKIRVNAVNPTVVMTSMGQAT-------- 190 (244)
T ss_dssp -----------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCSHHHHTT--------
T ss_pred -----------------------cccchhhhhhhHHHHHHHHHHHHHHhCCCcEEEEEEeeCcCcChHHhhh--------
Confidence 22336789999999999999999885 79999999999865421100
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
+.. ......+....| ..-+...+|+|.+++.++..... .|+ ++++.|+
T Consensus 191 -------~~~--~~~~~~~~~~~p---------l~R~~~peevA~~v~fL~S~~a~~itG~--~i~vDGG 240 (244)
T d1pr9a_ 191 -------WSD--PHKAKTMLNRIP---------LGKFAEVEHVVNAILFLLSDRSGMTTGS--TLPVEGG 240 (244)
T ss_dssp -------SCS--HHHHHHHHTTCT---------TCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -------ccC--hHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCchhCCcCCc--EEEECcc
Confidence 000 122233333222 23467899999999998865443 455 8888765
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=99.90 E-value=5.7e-23 Score=191.51 Aligned_cols=236 Identities=16% Similarity=0.064 Sum_probs=165.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+++||.+++++|+++|++|++.+|.... +.+..++ .+.++.++.+|++
T Consensus 2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~----------------l~~~~~~----~~~~~~~~~~Dvt 61 (256)
T d1k2wa_ 2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINLEA----------------ARATAAE----IGPAACAIALDVT 61 (256)
T ss_dssp TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCHHH----------------HHHHHHH----HCTTEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHH----hCCceEEEEeeCC
Confidence 4689999999999999999999999999999999985431 1111222 2467889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|++|||||...... ...+.++|.+++++|+.|+..+.+++.. .+...+||++||..
T Consensus 62 ~~~~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~~~~~~~~g~Iv~isS~~ 141 (256)
T d1k2wa_ 62 DQASIDRCVAELLDRWGSIDILVNNAALFDLAPIVEITRESYDRLFAINVSGTLFMMQAVARAMIAGGRGGKIINMASQA 141 (256)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHhCCccEEEeecccccccccccCCHHHHHhhhceeeeccccchhhccchhHHhccCCccccccchh
Confidence 999998887653 7999999999865433 3336678899999999999999886532 23224999999965
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
.+- +......|+.+|++.+.+++.++.++ |++++.|.||.|-.|..+... .
T Consensus 142 ~~~------------------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~i~T~~~~~~~--~ 195 (256)
T d1k2wa_ 142 GRR------------------------GEALVGVYCATKAAVISLTQSAGLNLIRHGINVNAIAPGVVDGEHWDGVD--A 195 (256)
T ss_dssp GTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCCTTHHHHH--H
T ss_pred hcc------------------------ccccccchhhhhhHHHHHHHHHHHHhcccCeEEEEEecCCCCchhhhhhh--h
Confidence 331 22336899999999999999999885 899999999988776421000 0
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
...+.. +.. .......+... ....-+...+|+|.+++.++..... .|+ ++.+.|+
T Consensus 196 ~~~~~~---~~~---~~~~~~~~~~~---------~PlgR~~~p~evA~~v~fL~S~~a~~iTG~--~i~vDGG 252 (256)
T d1k2wa_ 196 KFADYE---NLP---RGEKKRQVGAA---------VPFGRMGRAEDLTGMAIFLATPEADYIVAQ--TYNVDGG 252 (256)
T ss_dssp HHHHHH---TCC---TTHHHHHHHHH---------STTSSCBCHHHHHHHHHHTTSGGGTTCCSC--EEEESTT
T ss_pred hhhhhc---cCC---hHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCchhCCccCc--eEEECcc
Confidence 000000 000 00011111111 1123467899999999998865443 455 8998875
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=99.90 E-value=5.3e-23 Score=191.08 Aligned_cols=228 Identities=13% Similarity=0.048 Sum_probs=163.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+++||++++++|+++|++|++.+|.... +.+..+.+. .+.++.++.+|++
T Consensus 3 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~----------------~~~~~~~~~--~~~~~~~~~~Dv~ 64 (251)
T d1zk4a1 3 RLDGKVAIITGGTLGIGLAIATKFVEEGAKVMITGRHSDV----------------GEKAAKSVG--TPDQIQFFQHDSS 64 (251)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHC--CTTTEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHhC--CCCcEEEEEccCC
Confidence 4789999999999999999999999999999999986432 111222221 2357899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|++|||||...... ...++++|.+++++|+.|+.++.+++.. .+.+.+||++||..
T Consensus 65 ~~~~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vnl~g~~~~~~~~~~~m~~~~~gg~Ii~isS~~ 144 (251)
T d1zk4a1 65 DEDGWTKLFDATEKAFGPVSTLVNNAGIAVNKSVEETTTAEWRKLLAVNLDGVFFGTRLGIQRMKNKGLGASIINMSSIE 144 (251)
T ss_dssp CHHHHHHHHHHHHHHHSSCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSSCEEEEEECCGG
T ss_pred CHHHHHHHHHHHHHHhCCceEEEeccccccccchhcccccchhhhccccccccchhHHHHHHHHHhcCCCCceEeeeccc
Confidence 999888877654 6999999999865433 3346778899999999999999988743 33334899999954
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH-----hCCceEEeecCeeecCCCCchhh
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA-----WGIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
.+- +......|+.+|++.+.+.+.++.+ +|++++.|.||.|..+....
T Consensus 145 ~~~------------------------~~~~~~~Y~asKaal~~lt~~lA~e~~l~~~gIrVN~I~PG~i~T~~~~~--- 197 (251)
T d1zk4a1 145 GFV------------------------GDPSLGAYNASKGAVRIMSKSAALDCALKDYDVRVNTVHPGYIKTPLVDD--- 197 (251)
T ss_dssp GTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEEEECCBCCHHHHT---
T ss_pred eec------------------------cCCCchhHHHHHHHHhcchHHHHHHHhcCCCcEEEEEEeCCCCCChhHHh---
Confidence 321 1223679999999999999988875 37999999999986542100
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. .-.......... ....-+...+|+|.+++.++..... .|+ ++.+.++
T Consensus 198 ---~------------~~~~~~~~~~~~---------~pl~R~~~pedvA~~v~fL~S~~s~~itG~--~i~vDGG 247 (251)
T d1zk4a1 198 ---L------------PGAEEAMSQRTK---------TPMGHIGEPNDIAYICVYLASNESKFATGS--EFVVDGG 247 (251)
T ss_dssp ---S------------TTHHHHHTSTTT---------CTTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ---c------------CCHHHHHHHHhC---------CCCCCCcCHHHHHHHHHHHhCchhCCCcCc--EEEECcc
Confidence 0 000111111111 1223467899999999999865443 455 8888765
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=99.89 E-value=6.5e-23 Score=191.34 Aligned_cols=232 Identities=12% Similarity=0.099 Sum_probs=167.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.++||++|||||+++||++++++|+++|++|++.+|.... +.+..+.+.. .+.++.++.+|++
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~----------------l~~~~~~~~~-~g~~~~~~~~Dv~ 67 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQKE----------------LNDCLTQWRS-KGFKVEASVCDLS 67 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHH-TTCEEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHh-cCCCceEEEeeCC
Confidence 4689999999999999999999999999999999986442 2222233322 2457889999999
Q ss_pred ChHHHHHHhhhc------CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 163 DFEFLSESFKSF------EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~------~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
|+++++++++.. ++|++|||||...... ...+.++|.+++++|+.|+.++.+++.. .+.+ +||++||.
T Consensus 68 ~~~~v~~~~~~~~~~~~~~idilvnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G-~Ii~isS~ 146 (259)
T d2ae2a_ 68 SRSERQELMNTVANHFHGKLNILVNNAGIVIYKEAKDYTVEDYSLIMSINFEAAYHLSVLAHPFLKASERG-NVVFISSV 146 (259)
T ss_dssp CHHHHHHHHHHHHHHTTTCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTSSE-EEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCceEEEECCceeccCccccCCHHHHHHHHhcccceeEEEEeeccchhhhhccc-cccccccc
Confidence 999888776532 4899999999865433 3446778999999999999999887743 3444 99999995
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
.... +......|+.+|++.+.+++.++.++ |++++.|.||.|--+....
T Consensus 147 ~~~~------------------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~---- 198 (259)
T d2ae2a_ 147 SGAL------------------------AVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEM---- 198 (259)
T ss_dssp GGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCSHHHHH----
T ss_pred cccc------------------------ccccccchHHHHHHHHHHHHHHHHHhCcCceEEEEeeeCcccCHHHHh----
Confidence 4321 22336889999999999999999984 7999999999985442100
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
... .......+.++....| ..-+...+|+|++++.++..... .|+ ++.+.++
T Consensus 199 --~~~--------~~~~~~~~~~~~~~~p---------l~R~g~pedvA~~v~fL~S~~s~~itG~--~i~VDGG 252 (259)
T d2ae2a_ 199 --TIQ--------DPEQKENLNKLIDRCA---------LRRMGEPKELAAMVAFLCFPAASYVTGQ--IIYVDGG 252 (259)
T ss_dssp --HTT--------SHHHHHHHHHHHHTST---------TCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred --hhh--------chhhHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCchhCCCcCc--EEEECCC
Confidence 000 0001223333333322 22457789999999999865443 455 8888765
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.89 E-value=9.7e-23 Score=190.05 Aligned_cols=228 Identities=13% Similarity=0.094 Sum_probs=152.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+++||.+++++|+++|++|++++|.... +.+..+.+.. .+.++..+.+|++
T Consensus 5 ~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~~~----------------l~~~~~~~~~-~~~~~~~~~~Dv~ 67 (259)
T d1xq1a_ 5 SLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNEYE----------------LNECLSKWQK-KGFQVTGSVCDAS 67 (259)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHH-TTCCEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHh-cCCceEEEeccCC
Confidence 4689999999999999999999999999999999986542 2222333322 2357899999999
Q ss_pred ChHHHHHHhhhc------CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc
Q 011707 163 DFEFLSESFKSF------EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~------~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~ 231 (479)
++++++++++.. .+|++|||||...... ...+.++|.+++++|+.|+..+.+++. +.+.+ +||++||.
T Consensus 68 ~~~~v~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G-~Iv~isS~ 146 (259)
T d1xq1a_ 68 LRPEREKLMQTVSSMFGGKLDILINNLGAIRSKPTLDYTAEDFSFHISTNLESAYHLSQLAHPLLKASGCG-NIIFMSSI 146 (259)
T ss_dssp SHHHHHHHHHHHHHHHTTCCSEEEEECCC------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSC-EEEEEC--
T ss_pred CHHHHHHHHHHHHHHhCCCcccccccccccCCCchhhCCHHHHHHHHHHHhhhheeeehhhhhcccccccc-cccccccc
Confidence 998887776532 4899999999865433 234667889999999999999988774 34555 99999995
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
.... +......|+.+|++.+.+++.++.++ |+++++|-||.|--|.....
T Consensus 147 ~~~~------------------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~V~PG~i~T~~~~~~--- 199 (259)
T d1xq1a_ 147 AGVV------------------------SASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAV--- 199 (259)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEECCSCC----------
T ss_pred cccc------------------------cccccccccccccchhhhhHHHHHHhcccCeEEEEeccCcccCHHhhhh---
Confidence 4221 22236789999999999999999985 89999999999865532110
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.-......+.. .....-+...+|+|.+++.++..... .|+ ++++.++
T Consensus 200 ---------------~~~~~~~~~~~---------~~pl~R~~~pedvA~~v~fL~S~~s~~iTG~--~i~vDGG 248 (259)
T d1xq1a_ 200 ---------------YDDEFKKVVIS---------RKPLGRFGEPEEVSSLVAFLCMPAASYITGQ--TICVDGG 248 (259)
T ss_dssp ------------------------------------------CCGGGGHHHHHHHTSGGGTTCCSC--EEECCCC
T ss_pred ---------------chHHHHHHHHh---------CCCCCCCcCHHHHHHHHHHHhCchhcCCcCc--EEEeCCC
Confidence 00011111111 11223456789999999988864433 455 8887664
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=99.88 E-value=2.3e-22 Score=187.58 Aligned_cols=235 Identities=12% Similarity=0.114 Sum_probs=165.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
||.+|||||+++||.+++++|+++|++|++.+|.... +.+..+.+.. .+.++.++.+|++|++
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga~V~i~~r~~~~----------------l~~~~~~l~~-~g~~~~~~~~Dvs~~~ 64 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGLRVFVCARGEEG----------------LRTTLKELRE-AGVEADGRTCDVRSVP 64 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHH-TTCCEEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHh-cCCcEEEEEeecCCHH
Confidence 7899999999999999999999999999999986432 2222333332 2457899999999999
Q ss_pred HHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH------cCCcceEEEeecccc
Q 011707 166 FLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE------FRQECHLVKLGTMGE 233 (479)
Q Consensus 166 ~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~------~g~~~~~V~~SS~~v 233 (479)
+++++++.. ++|++|||||...... ...+.++|.+++++|+.|+.++.+++.. .+.+ +||++||...
T Consensus 65 ~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~~~~~~~~~g-~Ii~i~S~~~ 143 (257)
T d2rhca1 65 EIEALVAAVVERYGPVDVLVNNAGRPGGGATAELADELWLDVVETNLTGVFRVTKQVLKAGGMLERGTG-RIVNIASTGG 143 (257)
T ss_dssp HHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTTSHHHHTEE-EEEEECCGGG
T ss_pred HHHHHHHHHHHHhCCCCEEEecccccCCCChHHcCHHHHHHHHHHHhhhhhHHHHHHhHHHHHHhcCCc-cccccccccc
Confidence 988877653 6999999999865443 3347778999999999999999998854 2334 8999988543
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +......|+.+|++.+.+++.++.++ |++++.|.||.|--|....
T Consensus 144 ~~------------------------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~------ 193 (257)
T d2rhca1 144 KQ------------------------GVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAAS------ 193 (257)
T ss_dssp TS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHTTTSEEEEEEEEECSBCSHHHHH------
T ss_pred cc------------------------ccccchhHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeCCCCCHHHHH------
Confidence 31 22336889999999999999999985 6999999999885432100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
+.... ...+..........+....| ..-+...+|+|++++.++..... .|+ ++.+.++
T Consensus 194 ~~~~~--~~~~~~~~~e~~~~~~~~~P---------lgR~~~pedia~~v~fL~S~~s~~itG~--~i~vDGG 253 (257)
T d2rhca1 194 VREHY--SDIWEVSTEEAFDRITARVP---------IGRYVQPSEVAEMVAYLIGPGAAAVTAQ--ALNVCGG 253 (257)
T ss_dssp HHHHH--HHHTTCCHHHHHHHHHTTST---------TSSCBCHHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred HHhhh--hhhcccChHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCchhcCCcCc--eEEECcC
Confidence 00000 00000011223333333222 22467899999999999865433 455 8888765
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=99.88 E-value=2.8e-21 Score=181.27 Aligned_cols=232 Identities=17% Similarity=0.091 Sum_probs=164.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+++||..++++|+++|++|++++|.... +.+..+.+.. ..++.++.+|++
T Consensus 3 rL~gKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~----------------~~~~~~~l~~--~~~~~~~~~Dv~ 64 (268)
T d2bgka1 3 RLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDH----------------GQKVCNNIGS--PDVISFVHCDVT 64 (268)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHCC--TTTEEEEECCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHhcC--CCceEEEEccCC
Confidence 5789999999999999999999999999999999986432 1122222221 246888999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcc---cccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeec
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAP---YSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~---~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS 230 (479)
|+++++++++.. ++|++|||||..... ....++++|..++++|+.|+..+.+++.. .+.+ ++|++||
T Consensus 65 ~~~~v~~~~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g-~ii~iss 143 (268)
T d2bgka1 65 KDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFLVAKHAARVMIPAKKG-SIVFTAS 143 (268)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCSSCSSTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHGGGTCE-EEEEECC
T ss_pred CHHHHHHHHHHHHHHcCCcceeccccccccCCCcccccCcHHHHHHHHHHhhcchhhhhhhhcchHhhcCCC-Ccccccc
Confidence 999998887643 799999999976433 23345668899999999999999987743 3444 8999988
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhh
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
...+... ......|+.+|++.+.+++.++.++ |++++.|.||.|-.|.....
T Consensus 144 ~~~~~~~-----------------------~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~I~PG~i~T~~~~~~-- 198 (268)
T d2bgka1 144 ISSFTAG-----------------------EGVSHVYTATKHAVLGLTTSLCTELGEYGIRVNCVSPYIVASPLLTDV-- 198 (268)
T ss_dssp GGGTCCC-----------------------TTSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCCSCCCCTTS--
T ss_pred ccccccc-----------------------cccccccchhHHHHHhCHHHHHHHhChhCeEEEecCCCCccChHHhhh--
Confidence 5433111 1113479999999999999999885 79999999999977653211
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
+...-...-........ ...-+...+|+|++++.++..... .|+ ++.+.++
T Consensus 199 -------------~~~~~~~~~~~~~~~~~--------~~gr~~~pedvA~~v~fL~S~~s~~itGq--~i~VDGG 251 (268)
T d2bgka1 199 -------------FGVDSSRVEELAHQAAN--------LKGTLLRAEDVADAVAYLAGDESKYVSGL--NLVIDGG 251 (268)
T ss_dssp -------------SSCCHHHHHHHHHHTCS--------SCSCCCCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -------------hcCCHHHHHHHHHhccc--------cCCCCcCHHHHHHHHHHHhChhhCCccCc--eEEECcC
Confidence 01001111111111111 112457899999999999865443 455 9999875
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=99.88 E-value=7e-22 Score=183.98 Aligned_cols=236 Identities=16% Similarity=0.087 Sum_probs=162.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|.+|||||+++||.+++++|+++|++|++.+|.... +.+..+.+.. .+.++.++.+|++|+++
T Consensus 2 KValITGas~GIG~aia~~la~~Ga~V~~~~r~~~~----------------l~~~~~~i~~-~g~~~~~~~~Dv~~~~~ 64 (255)
T d1gega_ 2 KVALVTGAGQGIGKAIALRLVKDGFAVAIADYNDAT----------------AKAVASEINQ-AGGHAVAVKVDVSDRDQ 64 (255)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHH-TTCCEEEEECCTTSHHH
T ss_pred CEEEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHh-cCCcEEEEEeeCCCHHH
Confidence 567999999999999999999999999999986542 1222223322 24578899999999998
Q ss_pred HHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccccccC
Q 011707 167 LSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 167 ~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~g~ 236 (479)
++++++.. ++|++|||||...... ...++++|.+++++|+.|+.++++++. +.+...+||++||...+.
T Consensus 65 v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~g~Iv~isS~~~~~- 143 (255)
T d1gega_ 65 VFAAVEQARKTLGGFDVIVNNAGVAPSTPIESITPEIVDKVYNINVKGVIWGIQAAVEAFKKEGHGGKIINACSQAGHV- 143 (255)
T ss_dssp HHHHHHHHHHHTTCCCEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGTS-
T ss_pred HHHHHHHHHHHhCCccEEEecccccccCcHHHhhhhhhhhhhhhcccchhhhhhhhcchhhhhccccccccccchhhcc-
Confidence 88877653 6999999999765433 334677889999999999999988763 334434899999854331
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
+......|+.+|++.+.+++.++.++ |++++.|.||.|--|..... ......
T Consensus 144 -----------------------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~--~~~~~~ 198 (255)
T d1gega_ 144 -----------------------GNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEI--DRQVSE 198 (255)
T ss_dssp -----------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBSSHHHHHH--HHHHHH
T ss_pred -----------------------cCcccccchhCHHHHHhhHHHHHHHhhhhCcEEEEEecCcccChHHhhh--hhhhHh
Confidence 22346889999999999999999885 89999999998854421000 000000
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
.. ..........+.+. ....-+...+|+|++++.++..... .|+ ++.+.++.
T Consensus 199 ~~------~~~~~~~~~~~~~~---------~pl~R~~~peevA~~v~fL~S~~a~~itG~--~i~vDGG~ 252 (255)
T d1gega_ 199 AA------GKPLGYGTAEFAKR---------ITLGRLSEPEDVAACVSYLASPDSDYMTGQ--SLLIDGGM 252 (255)
T ss_dssp HH------TCCTTHHHHHHHTT---------CTTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESSSS
T ss_pred hh------cccchhHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCchhCCccCc--EEEecCCE
Confidence 00 00000111111111 1223467899999999999865443 455 88887753
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=99.88 E-value=8.4e-22 Score=183.93 Aligned_cols=242 Identities=19% Similarity=0.188 Sum_probs=166.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.++||++|||||+++||.++++.|+++|++|++++|.... +.+..+.+.. .+.++..+.+|++
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~----------------l~~~~~~~~~-~g~~~~~~~~Dv~ 64 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNREA----------------LEKAEASVRE-KGVEARSYVCDVT 64 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHT-TTSCEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHh-cCCcEEEEEccCC
Confidence 4689999999999999999999999999999999986432 1222222322 2457889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
|+++++++++.. ++|++|||||.... +....+.++|.+++++|+.++.++.+++.. .+.+ +||++||.
T Consensus 65 ~~~~v~~~~~~~~~~~g~iDilVnnaG~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G-~II~isS~ 143 (260)
T d1zema1 65 SEEAVIGTVDSVVRDFGKIDFLFNNAGYQGAFAPVQDYPSDDFARVLTINVTGAFHVLKAVSRQMITQNYG-RIVNTASM 143 (260)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCH
T ss_pred CHHHHHHHHHHHHHHhCCCCeehhhhccccccCccccccHHHHHhhccccccccccchhhHHhhhhhhcCC-CCCeeech
Confidence 999888887654 79999999997643 234457778999999999999999887743 3444 99999995
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
..+. +......|+.+|++.+.+++.++.++ |++++.|.||.|--+.......
T Consensus 144 ~~~~------------------------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~v~T~~~~~~~~- 198 (260)
T d1zema1 144 AGVK------------------------GPPNMAAYGTSKGAIIALTETAALDLAPYNIRVNAISPGYMGPGFMWERQV- 198 (260)
T ss_dssp HHHS------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCSSHHHHHHH-
T ss_pred hhcc------------------------CCcchHHHHHHHHHHHHHHHHHHHHhhhhCCEEEEeccCcccCcchhhcch-
Confidence 4331 22236799999999999999999985 7999999999986652110000
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFT 380 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~ 380 (479)
....... ..........+...+....| ..-+...+|+|.+++.++..... .|+ ++++.|
T Consensus 199 -~~~~~~~-~~~~~~~~~~~~~~~~~~~P---------l~R~g~pedvA~~v~fL~S~~s~~itG~--~i~VDG 259 (260)
T d1zema1 199 -ELQAKVG-SQYFSTDPKVVAQQMIGSVP---------MRRYGDINEIPGVVAFLLGDDSSFMTGV--NLPIAG 259 (260)
T ss_dssp -HHHHHHT-CTTSCSSHHHHHHHHHHTST---------TSSCBCGGGSHHHHHHHHSGGGTTCCSC--EEEESC
T ss_pred -hhhhhhc-ccccccCHHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCchhcCccCC--eEEeCC
Confidence 0000000 00000011122222222222 22456789999999999875443 354 888765
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.88 E-value=1.9e-22 Score=187.45 Aligned_cols=230 Identities=12% Similarity=0.035 Sum_probs=161.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|++|||||+++||.+++++|+++|++|++.+|.... ++...+..+.+..++.+|++
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~Dv~ 62 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINEAA--------------------GQQLAAELGERSMFVRHDVS 62 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCHHH--------------------HHHHHHHHCTTEEEECCCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--------------------HHHHHHHhCCCeEEEEeecC
Confidence 4789999999999999999999999999999999875431 11121222457888999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc--CCcceEEEeeccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF--RQECHLVKLGTMGEY 234 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~--g~~~~~V~~SS~~v~ 234 (479)
|.++++++++.. ++|++|||||...... ...+.++|.+++++|+.|+..+.+++... ..+.+||++||....
T Consensus 63 ~~~~~~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~G~Iv~isS~~~~ 142 (253)
T d1hxha_ 63 SEADWTLVMAAVQRRLGTLNVLVNNAGILLPGDMETGRLEDFSRLLKINTESVFIGCQQGIAAMKETGGSIINMASVSSW 142 (253)
T ss_dssp CHHHHHHHHHHHHHHHCSCCEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTTCEEEEEECCGGGT
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEecccccCCCCcccCCHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCceecccchhhh
Confidence 999888887654 6999999999865432 34466788999999999999998887542 112499999995432
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-----CCceEEeecCeeecCCCCchhhhH
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-----GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
. +......|+.+|++.+.+++.++.++ +++++.|.||.|..+..+.
T Consensus 143 ~------------------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~g~~IrVN~I~PG~i~T~~~~~----- 193 (253)
T d1hxha_ 143 L------------------------PIEQYAGYSASKAAVSALTRAAALSCRKQGYAIRVNSIHPDGIYTPMMQA----- 193 (253)
T ss_dssp S------------------------CCTTBHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESEECCHHHHH-----
T ss_pred c------------------------CccccccccchhHHHHHHHHHHHHHHhhcCCCEEEEEEeECCCcCHhHHh-----
Confidence 1 22336789999999999999888764 4999999999986542100
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.. +.+. ......... .....-.+...+|+|++++.++..... .|+ ++++.++
T Consensus 194 -~~----~~~~--------~~~~~~~~~-----~~~~~gr~~~pedvA~~v~fL~S~~s~~itG~--~i~VDGG 247 (253)
T d1hxha_ 194 -SL----PKGV--------SKEMVLHDP-----KLNRAGRAYMPERIAQLVLFLASDESSVMSGS--ELHADNS 247 (253)
T ss_dssp -HS----CTTC--------CHHHHBCBT-----TTBTTCCEECHHHHHHHHHHHHSGGGTTCCSC--EEEESSS
T ss_pred -hC----cchh--------hHHHHHhCc-----cccccCCCCCHHHHHHHHHHHhChhhCCCcCc--EEEECcc
Confidence 00 0000 001111100 001122467789999999999865443 455 8998765
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=6.7e-22 Score=183.12 Aligned_cols=228 Identities=14% Similarity=0.068 Sum_probs=162.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.++||++|||||+++||.++++.|+++|++|++.+|.... ++...+. ..++.++.+|++
T Consensus 3 rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~--------------------~~~~~~~-~~~~~~~~~Dvs 61 (250)
T d1ydea1 3 RYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDESG--------------------GRALEQE-LPGAVFILCDVT 61 (250)
T ss_dssp TTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HHHHHHH-CTTEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--------------------HHHHHHh-cCCCeEEEccCC
Confidence 5689999999999999999999999999999999985431 1111111 146789999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc--ccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY--SMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~--~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|++|||||...... ...+.++|++++++|+.|+.++.+++... +.+ +||++||..
T Consensus 62 ~~~~v~~~~~~~~~~~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~G-~Ii~isS~~ 140 (250)
T d1ydea1 62 QEDDVKTLVSETIRRFGRLDCVVNNAGHHPPPQRPEETSAQGFRQLLELNLLGTYTLTKLALPYLRKSQG-NVINISSLV 140 (250)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEECCHH
T ss_pred CHHHHHHHHHHHHHhcCCCCEEEecccccccccccccccHHHHHHHHHHhhhhHHHHHHHhhHHHHhCCC-CCccccccc
Confidence 999998887654 6999999999754332 33466789999999999999998877432 224 899999954
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhH
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
... +......|+.+|++.+.+++.++.++ |++++.|.||.|--|.. .
T Consensus 141 ~~~------------------------~~~~~~~Y~asKaal~~lt~~lA~e~a~~gIrVN~I~PG~i~T~~~------~ 190 (250)
T d1ydea1 141 GAI------------------------GQAQAVPYVATKGAVTAMTKALALDESPYGVRVNCISPGNIWTPLW------E 190 (250)
T ss_dssp HHH------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECSBCCHHH------H
T ss_pred ccc------------------------cccCcchhHHHHhhHHHHHHHHHHHhcccCeEEEEEeeCCCCChhH------H
Confidence 331 22236899999999999999999985 79999999998853310 0
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.+... .......+.+.....| ..-+...+|+|.+++.++.. .. .|+ ++.+.++
T Consensus 191 ~~~~~-------~~~~~~~~~~~~~~~p---------l~R~g~p~eva~~v~fL~Sd-a~~itG~--~i~vDGG 245 (250)
T d1ydea1 191 ELAAL-------MPDPRASIREGMLAQP---------LGRMGQPAEVGAAAVFLASE-ANFCTGI--ELLVTGG 245 (250)
T ss_dssp HHHTT-------SSSHHHHHHHHHHTST---------TSSCBCHHHHHHHHHHHHHH-CTTCCSC--EEEESTT
T ss_pred HHhhc-------CCCHHHHHHHHHhcCC---------CCCCCCHHHHHHHHHHHhCc-cCCCcCC--eEEECCC
Confidence 00000 0001122333332222 23467899999999988853 33 454 8888765
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=5.3e-22 Score=188.57 Aligned_cols=231 Identities=16% Similarity=0.097 Sum_probs=165.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhh----cccCCCceeEEE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW----KSLTGKNIELYI 158 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~v~ 158 (479)
.++||++|||||+++||.+++++|+++|++|++.+|..... .+..+++ ....+.++..+.
T Consensus 9 ~L~gKvalITGas~GIG~aia~~la~~Ga~Vvi~~r~~~~l----------------~~~~~el~~~~~~~~~~~~~~~~ 72 (297)
T d1yxma1 9 LLQGQVAIVTGGATGIGKAIVKELLELGSNVVIASRKLERL----------------KSAADELQANLPPTKQARVIPIQ 72 (297)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH----------------HHHHHHHHHTSCTTCCCCEEEEE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHH----------------HHHHHHHHhhhccccCceEEEEe
Confidence 47899999999999999999999999999999999865421 1122222 122345789999
Q ss_pred cccCChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEe
Q 011707 159 GDICDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKL 228 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~ 228 (479)
+|++|+++++++++.. ++|++|||||...... ...++++|.+++++|+.|+..+.+++.. .+.+ ++|++
T Consensus 73 ~Dvs~~~~v~~~~~~~~~~~G~iDiLVnnAg~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~~~m~~~~~g-~Ii~~ 151 (297)
T d1yxma1 73 CNIRNEEEVNNLVKSTLDTFGKINFLVNNGGGQFLSPAEHISSKGWHAVLETNLTGTFYMCKAVYSSWMKEHGG-SIVNI 151 (297)
T ss_dssp CCTTCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTHHHHCE-EEEEE
T ss_pred ccCCCHHHHHHHHHHHHHHhCCeEEEEeeccccccCchhhhhhhhhhhhhcccccchhhHHHHHHHhhcccccc-ccccc
Confidence 9999999988887643 7999999999765433 3346678899999999999999988753 3344 78888
Q ss_pred eccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCch
Q 011707 229 GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 229 SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~ 305 (479)
|+.+..+. .....|+.+|++.+.+++.++.++ |+++++|.||.|.-+.....
T Consensus 152 ss~~~~~~-------------------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~~ 206 (297)
T d1yxma1 152 IVPTKAGF-------------------------PLAVHSGAARAGVYNLTKSLALEWACSGIRINCVAPGVIYSQTAVEN 206 (297)
T ss_dssp CCCCTTCC-------------------------TTCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEECSBCCTGGGTT
T ss_pred cccccccc-------------------------cccccchhHHHHHHHHHHHHHHHhcccCceEEEeeeCcCcCcchhhh
Confidence 77543322 236789999999999999999885 79999999999876532110
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. ...-..+....... ....-+...+|+|.+++.++..... .|+ ++.|.++
T Consensus 207 ~---------------~~~~~~~~~~~~~~---------~plgR~g~pedvA~~v~fL~Sd~s~~iTG~--~i~VDGG 258 (297)
T d1yxma1 207 Y---------------GSWGQSFFEGSFQK---------IPAKRIGVPEEVSSVVCFLLSPAASFITGQ--SVDVDGG 258 (297)
T ss_dssp S---------------GGGGGGGGTTGGGG---------STTSSCBCTHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred c---------------cccCHHHHHHHHhc---------CCCCCCcCHHHHHHHHHHHhCchhcCcCCc--EEEeCcC
Confidence 0 00000111111111 1123466789999999999965443 454 8998875
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=99.88 E-value=1.3e-22 Score=198.32 Aligned_cols=239 Identities=14% Similarity=0.095 Sum_probs=170.1
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
+.|+|||||||||||++|+++|+++|++|+++.|..+.... ..+ ....+++++.+|++|.
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~------------------~~~--~~~~~v~~~~gD~~d~ 61 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA------------------EEL--QAIPNVTLFQGPLLNN 61 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH------------------HHH--HTSTTEEEEESCCTTC
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh------------------hhh--cccCCCEEEEeeCCCc
Confidence 46899999999999999999999999999999886442111 111 1125799999999986
Q ss_pred H-HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCCCCCCcC
Q 011707 165 E-FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTPNIDIEE 243 (479)
Q Consensus 165 ~-~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~~~~~~e 243 (479)
. .+..++. ++|+++++... ....|+..+.+++++|++.|+. ++|+.||.......
T Consensus 62 ~~~~~~a~~--~~~~~~~~~~~---------------~~~~~~~~~~~~~~aa~~agv~-~~v~~Ss~~~~~~~------ 117 (350)
T d1xgka_ 62 VPLMDTLFE--GAHLAFINTTS---------------QAGDEIAIGKDLADAAKRAGTI-QHYIYSSMPDHSLY------ 117 (350)
T ss_dssp HHHHHHHHT--TCSEEEECCCS---------------TTSCHHHHHHHHHHHHHHHSCC-SEEEEEECCCGGGT------
T ss_pred HHHHHHHhc--CCceEEeeccc---------------ccchhhhhhhHHHHHHHHhCCC-ceEEEeeccccccC------
Confidence 5 4677777 78998877531 1135788899999999999988 78888885433221
Q ss_pred CceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccc
Q 011707 244 GYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGT 323 (479)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~ 323 (479)
...+...|..+|...|..+ ...+++++++||+.+++....... ..+..
T Consensus 118 ----------------~~~~~~~~~~~k~~~~~~~----~~~~~~~~~vr~~~~~~~~~~~~~------------~~~~~ 165 (350)
T d1xgka_ 118 ----------------GPWPAVPMWAPKFTVENYV----RQLGLPSTFVYAGIYNNNFTSLPY------------PLFQM 165 (350)
T ss_dssp ----------------SSCCCCTTTHHHHHHHHHH----HTSSSCEEEEEECEEGGGCBSSSC------------SSCBE
T ss_pred ----------------CcccchhhhhhHHHHHHHH----HhhccCceeeeeceeecccccccc------------ccccc
Confidence 1223456778888877754 456899999999998875432110 00000
Q ss_pred hHHHHHHHHhcCC-CeEEecCCCceeccccH-HHHHHHHHHHHhCCC--CCCCceEEEeCCCCcCHHHHHHHHHHHhhhc
Q 011707 324 ALNRFCVQAAVGH-PLTVYGKGGQTRGYLDI-RDTVQCVELAIANPA--QPGEFRVFNQFTEQFSVNQLAALVTKAGEKL 399 (479)
Q Consensus 324 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~v-~Dva~a~~~~~~~~~--~~g~~~~~ni~~~~~s~~el~~~i~~~~~~~ 399 (479)
.....+. ....+.+++..+.++++ +|+++++..++.... ..|+ +|+++++.+|+.|+++.+.++ +
T Consensus 166 ------~~~~~~~~~~~~~~~~~~~~~~i~~~~Dva~~v~~~l~~~~~~~~G~--~~~~~g~~~T~~eia~~l~~~---~ 234 (350)
T d1xgka_ 166 ------ELMPDGTFEWHAPFDPDIPLPWLDAEHDVGPALLQIFKDGPQKWNGH--RIALTFETLSPVQVCAAFSRA---L 234 (350)
T ss_dssp ------EECTTSCEEEEESSCTTSCEEEECHHHHHHHHHHHHHHHCHHHHTTC--EEEECSEEECHHHHHHHHHHH---H
T ss_pred ------cccccccceeeecccCCCcceEEEeHHHHHHHHHHHHhCChhhcCCe--EEEEeCCcCCHHHHHHHHHHH---H
Confidence 0011222 23344456677788875 899999999987542 2455 999998779999999999999 9
Q ss_pred CCcceeeecCC
Q 011707 400 GLDVKTISVPN 410 (479)
Q Consensus 400 g~~~~~~~~~~ 410 (479)
|.++++..+|.
T Consensus 235 G~~v~~~~vp~ 245 (350)
T d1xgka_ 235 NRRVTYVQVPK 245 (350)
T ss_dssp TSCEEEEECSS
T ss_pred CCcceEEECCH
Confidence 99998888774
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.88 E-value=8.4e-22 Score=181.96 Aligned_cols=223 Identities=15% Similarity=0.096 Sum_probs=160.7
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
+.||||||+++||.+++++|+++|++|++.+++.... +.+..+.+. ..+.++.++.+|++|+++
T Consensus 2 pV~lITGas~GIG~a~a~~la~~Ga~V~i~~~~~~~~---------------~~~~~~~~~-~~g~~~~~~~~Dv~~~~~ 65 (244)
T d1edoa_ 2 PVVVVTGASRGIGKAIALSLGKAGCKVLVNYARSAKA---------------AEEVSKQIE-AYGGQAITFGGDVSKEAD 65 (244)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH---------------HHHHHHHHH-HHTCEEEEEECCTTSHHH
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHH---------------HHHHHHHHH-HcCCcEEEEeCCCCCHHH
Confidence 4799999999999999999999999999877643321 111112222 224578899999999999
Q ss_pred HHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecccc-cc
Q 011707 167 LSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGE-YG 235 (479)
Q Consensus 167 ~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v-~g 235 (479)
++++++.. ++|++|||||...... ...+.++|++++++|+.|+.++.+++. +.+.+ +||++||... .+
T Consensus 66 v~~~~~~~~~~~g~iDiLVnnAg~~~~~~~~~~~~~~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G-~IVnisS~~~~~~ 144 (244)
T d1edoa_ 66 VEAMMKTAIDAWGTIDVVVNNAGITRDTLLIRMKKSQWDEVIDLNLTGVFLCTQAATKIMMKKRKG-RIINIASVVGLIG 144 (244)
T ss_dssp HHHHHHHHHHHSSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCTHHHHC
T ss_pred HHHHHHHHHHHcCCCCccccccccccccchhccchHHHHHHHhhhhhhHHHHHHHHHHHHHHcCCc-EEEEEcChhhcCC
Confidence 88887653 6999999999865443 334677899999999999999988774 34555 9999999543 33
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
. .....|+.+|++.+.+.+.++.++ |++++++.||.|--+..+
T Consensus 145 ~-------------------------~~~~~Y~asKaal~~ltk~lA~el~~~gIrvN~I~PG~i~T~~~~--------- 190 (244)
T d1edoa_ 145 N-------------------------IGQANYAAAKAGVIGFSKTAAREGASRNINVNVVCPGFIASDMTA--------- 190 (244)
T ss_dssp C-------------------------TTCHHHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECSBCSHHHH---------
T ss_pred C-------------------------CCCHHHHHHHHHHHHChHHHHHHHhhhCcEEEEEecceeccHHHH---------
Confidence 2 236899999999999999999985 899999999988543210
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC---CCCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA---QPGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~---~~g~~~~~ni~~~ 381 (479)
.....+...+....| ..-+...+|+|.+++.++..+. -.|+ ++.+.|+
T Consensus 191 ----------~~~~~~~~~~~~~~p---------l~R~~~p~dvA~~v~fLa~S~~a~~itG~--~i~vdGG 241 (244)
T d1edoa_ 191 ----------KLGEDMEKKILGTIP---------LGRTGQPENVAGLVEFLALSPAASYITGQ--AFTIDGG 241 (244)
T ss_dssp ----------TTCHHHHHHHHTSCT---------TCSCBCHHHHHHHHHHHHHCSGGGGCCSC--EEEESTT
T ss_pred ----------HhhHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHHCCchhcCCcCC--eEEeCCC
Confidence 111223333333222 2346789999999998864332 2455 8888764
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=99.88 E-value=6.1e-22 Score=185.04 Aligned_cols=238 Identities=16% Similarity=0.177 Sum_probs=167.9
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+.+++|++|||||+++||.+++++|+++|++|++++|.... +.+..+.+.+..+.++..+.+|+
T Consensus 5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~----------------~~~~~~~~~~~~g~~~~~~~~Dv 68 (260)
T d1h5qa_ 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSAAD----------------AVEVTEKVGKEFGVKTKAYQCDV 68 (260)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCTT----------------HHHHHHHHHHHHTCCEEEEECCT
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHHHhCCceEEEEccC
Confidence 35789999999999999999999999999999999986542 12223333333356789999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~ 231 (479)
+|+++++++++.. ++|++|||||...... ...+.++|.+++++|+.|+.++.+++.. .+....++.+||.
T Consensus 69 ~~~~~v~~~~~~~~~~~g~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~m~~~~~~g~i~~~~s~ 148 (260)
T d1h5qa_ 69 SNTDIVTKTIQQIDADLGPISGLIANAGVSVVKPATELTHEDFAFVYDVNVFGVFNTCRAVAKLWLQKQQKGSIVVTSSM 148 (260)
T ss_dssp TCHHHHHHHHHHHHHHSCSEEEEEECCCCCCCSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCCEEEEEECCG
T ss_pred CCHHHHHHHHHHHHHHhCCCcEecccccccccCCHHHhccccccccccccccchhhhhhhhcccccccccceEEEEeecc
Confidence 9999988887643 6999999999765433 3346678899999999999999876643 2333377777775
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
.......... .+......|+.+|++.+.+++.++.++ |+++++|.||.|--+...
T Consensus 149 ~~~~~~~~~~-----------------~~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~----- 206 (260)
T d1h5qa_ 149 SSQIINQSSL-----------------NGSLTQVFYNSSKAACSNLVKGLAAEWASAGIRVNALSPGYVNTDQTA----- 206 (260)
T ss_dssp GGTSCCEEET-----------------TEECSCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCGGGG-----
T ss_pred cccccccccc-----------------ccCccccchhhhhhhHHHHHHHHHHHhchhCeEEeecCCCcccCcchh-----
Confidence 4332211000 011235789999999999999999875 799999999998654321
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
.....+........| ..-+...+|+|.+++.++..... .|+ ++.+.|+.
T Consensus 207 --------------~~~~~~~~~~~~~~p---------l~R~g~pedvA~~v~fL~S~~s~~itG~--~i~VDGG~ 257 (260)
T d1h5qa_ 207 --------------HMDKKIRDHQASNIP---------LNRFAQPEEMTGQAILLLSDHATYMTGG--EYFIDGGQ 257 (260)
T ss_dssp --------------GSCHHHHHHHHHTCT---------TSSCBCGGGGHHHHHHHHSGGGTTCCSC--EEEECTTG
T ss_pred --------------ccCHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhcchhCCCcCc--eEEECCCe
Confidence 111233333333322 22456789999999998865443 455 88888764
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=99.87 E-value=8.2e-22 Score=183.59 Aligned_cols=233 Identities=13% Similarity=0.144 Sum_probs=163.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.++||+||||||+++||++++++|+++|++|++++|.... +.+..+.+.. .+..+.++.+|++
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~----------------l~~~~~~~~~-~~~~~~~~~~D~s 65 (258)
T d1ae1a_ 3 SLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKE----------------LDECLEIWRE-KGLNVEGSVCDLL 65 (258)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHH-TTCCEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHh-cCCCceEEEeecC
Confidence 3689999999999999999999999999999999986542 1222223322 3457888999999
Q ss_pred ChHHHHHHhhh----c--CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc
Q 011707 163 DFEFLSESFKS----F--EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM 231 (479)
Q Consensus 163 d~~~~~~~~~~----~--~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~ 231 (479)
+.++++++++. + .+|++|||||...... ...+.++|.+++++|+.++..+.+++. +.+.+ ++|++||.
T Consensus 66 ~~~~~~~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~~~g-~ii~isS~ 144 (258)
T d1ae1a_ 66 SRTERDKLMQTVAHVFDGKLNILVNNAGVVIHKEAKDFTEKDYNIIMGTNFEAAYHLSQIAYPLLKASQNG-NVIFLSSI 144 (258)
T ss_dssp CHHHHHHHHHHHHHHTTSCCCEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTSE-EEEEECCG
T ss_pred CHHHHHHHHHHHHHHhCCCcEEEeccccccccCccccCCHHHHhhhhhhcccccccccccccccccccccc-cccccccc
Confidence 99988777653 2 4899999999865432 233667889999999999999988774 33444 99999996
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
.... +......|+.+|.+.+.+++.+++++ |+++++|.||.|..+......
T Consensus 145 ~~~~------------------------~~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~i~T~~~~~~~-- 198 (258)
T d1ae1a_ 145 AGFS------------------------ALPSVSLYSASKGAINQMTKSLACEWAKDNIRVNSVAPGVILTPLVETAI-- 198 (258)
T ss_dssp GGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBC----------
T ss_pred cccc------------------------ccccchhHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeCcccCcchhhhh--
Confidence 5431 22337899999999999999999985 799999999999766422110
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.... ........+....| +.-+...+|+|.+++.++..... .|+ .+.+.++
T Consensus 199 -------~~~~----~~~~~~~~~~~~~p---------lgR~~~pediA~~v~fL~S~~s~~itG~--~i~vDGG 251 (258)
T d1ae1a_ 199 -------KKNP----HQKEEIDNFIVKTP---------MGRAGKPQEVSALIAFLCFPAASYITGQ--IIWADGG 251 (258)
T ss_dssp ----------------CHHHHHHHHHHST---------TCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -------hhhh----hhHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhChhhCCCcCc--EEEeCCC
Confidence 0000 01122233322222 23468899999999999964433 455 8887764
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.87 E-value=6.1e-21 Score=178.11 Aligned_cols=244 Identities=14% Similarity=0.021 Sum_probs=165.0
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.|++||+||||||+++||.+++++|+++|++|++.++..... +.+..+.+. ..+.++..+.+|+
T Consensus 2 ~~L~GK~alITGas~GIG~aia~~la~~G~~Vvi~~~~~~~~---------------~~~~~~~~~-~~g~~~~~~~~D~ 65 (259)
T d1ja9a_ 2 KPLAGKVALTTGAGRGIGRGIAIELGRRGASVVVNYGSSSKA---------------AEEVVAELK-KLGAQGVAIQADI 65 (259)
T ss_dssp CTTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---------------HHHHHHHHH-HTTCCEEEEECCT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEcCCChHH---------------HHHHHHHHH-HcCCCceEecCCC
Confidence 367899999999999999999999999999999876654321 111122222 2345788999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeec-ccc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGT-MGE 233 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS-~~v 233 (479)
+|.++++++++.. ++|++|||||...... ...+.+++++++++|+.++.++++++..+- ...+++.++| .+.
T Consensus 66 ~~~~~v~~~~~~~~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s~~~~ 145 (259)
T d1ja9a_ 66 SKPSEVVALFDKAVSHFGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSSIAAV 145 (259)
T ss_dssp TSHHHHHHHHHHHHHHHSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECCGGGT
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccccccc
Confidence 9998888877643 6999999999865443 334666788999999999999999886531 1125555555 332
Q ss_pred ccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHh
Q 011707 234 YGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 234 ~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+. +......|+.+|++.+.+++.++.++ |+++++|.||.+--+..+.
T Consensus 146 ~~------------------------~~~~~~~Y~asK~al~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~------ 195 (259)
T d1ja9a_ 146 MT------------------------GIPNHALYAGSKAAVEGFCRAFAVDCGAKGVTVNCIAPGGVKTDMFDE------ 195 (259)
T ss_dssp CC------------------------SCCSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHHH------
T ss_pred cc------------------------CCCCchhHHHHHHHHHHHHHHHHHHHhhcCeEEeccCcCCccChhhhh------
Confidence 21 11236789999999999999999984 7999999999985331100
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
.................+...+....| ..-+...+|++++++.++..... .|+ ++.+.++.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~p---------l~R~g~p~eVa~~v~fL~S~~a~~itG~--~i~vDGG~ 258 (259)
T d1ja9a_ 196 NSWHYAPGGYKGMPQEKIDEGLANMNP---------LKRIGYPADIGRAVSALCQEESEWINGQ--VIKLTGGG 258 (259)
T ss_dssp HGGGTSTTCCTTCCHHHHHHHHHHTST---------TSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTC
T ss_pred hhhhhhhhhcccCCHHHHHHHHHhCCC---------CCCCcCHHHHHHHHHHHhCchhcCCcCc--eEEeCCCC
Confidence 000000000001111222333333322 33567899999999999976554 454 88887764
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=99.87 E-value=1.9e-21 Score=178.69 Aligned_cols=216 Identities=15% Similarity=0.086 Sum_probs=156.2
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+++||++++++|+++|++|++.+|.... ++. ....++.+|+++
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~~~~--------------------l~~------~~~~~~~~Dv~~ 55 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARNEEL--------------------LKR------SGHRYVVCDLRK 55 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HHH------TCSEEEECCTTT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH--------------------HHh------cCCcEEEcchHH
Confidence 479999999999999999999999999999999985421 111 245678899976
Q ss_pred hHHHHHHhhhc-CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccccccCC
Q 011707 164 FEFLSESFKSF-EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEYGTP 237 (479)
Q Consensus 164 ~~~~~~~~~~~-~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~g~~ 237 (479)
. ++.+++++ ++|++|||||...... ...+.++|.+++++|+.++..+.+++. +.+.+ ++|++||.....
T Consensus 56 ~--~~~~~~~~g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~G-~ii~i~S~~~~~-- 130 (234)
T d1o5ia_ 56 D--LDLLFEKVKEVDILVLNAGGPKAGFFDELTNEDFKEAIDSLFLNMIKIVRNYLPAMKEKGWG-RIVAITSFSVIS-- 130 (234)
T ss_dssp C--HHHHHHHSCCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCGGGTS--
T ss_pred H--HHHHHHHhCCCcEEEecccccCCcchhhhhhHHHHHHhhhhhhhhhhhhhcccccccccccc-cccccccccccc--
Confidence 3 44455543 6999999999765433 233667889999999999999888773 34555 899999865432
Q ss_pred CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
+......|+.+|++.+.+++.++.++ |+++++|.||.+-.+.....
T Consensus 131 ----------------------~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~v~T~~~~~~--------- 179 (234)
T d1o5ia_ 131 ----------------------PIENLYTSNSARMALTGFLKTLSFEVAPYGITVNCVAPGWTETERVKEL--------- 179 (234)
T ss_dssp ----------------------CCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSBCCTTHHHH---------
T ss_pred ----------------------cccccccchhHHHHHHHHHHHHHHHhcccCeEEeecccCccchhhhhhh---------
Confidence 22346789999999999999999985 79999999999866532100
Q ss_pred cCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
.-......+.... ....+...+|+|.+++.++..... .|+ ++.+.++
T Consensus 180 ---------~~~~~~~~~~~~~---------pl~R~~~pediA~~v~fL~S~~s~~itG~--~i~vDGG 228 (234)
T d1o5ia_ 180 ---------LSEEKKKQVESQI---------PMRRMAKPEEIASVVAFLCSEKASYLTGQ--TIVVDGG 228 (234)
T ss_dssp ---------SCHHHHHHHHTTS---------TTSSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ---------cCHHHHHHHHhcC---------CCCCCcCHHHHHHHHHHHhChhhcCCcCc--EEEECcc
Confidence 0011122222222 223567899999999998865443 455 8988775
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=99.87 E-value=2.7e-21 Score=178.26 Aligned_cols=224 Identities=16% Similarity=0.100 Sum_probs=162.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.++||++|||||+++||..++++|+++|++|++.+|.... ++...+..+.++.++++|++
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~~~--------------------~~~~~~~~~~~~~~~~~Dls 61 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREERL--------------------LAEAVAALEAEAIAVVADVS 61 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HHHHHHTCCSSEEEEECCTT
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--------------------HHHHHHHcCCceEEEEecCC
Confidence 3679999999999999999999999999999999986542 11222222467889999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcCCcc-eEEEeecccccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQEC-HLVKLGTMGEYG 235 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~-~~V~~SS~~v~g 235 (479)
++++++++++.. ++|++|||||...... ...+.++|..++++|+.++.++.+++...-.+. .++++||.+...
T Consensus 62 ~~~~i~~~~~~i~~~~g~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss~a~~~ 141 (241)
T d2a4ka1 62 DPKAVEAVFAEALEEFGRLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGSVAGLG 141 (241)
T ss_dssp SHHHHHHHHHHHHHHHSCCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECCCTTCC
T ss_pred CHHHHHHHHHHHHHHhCCccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeecccccccc
Confidence 999998887754 6999999999865433 334666788999999999999999886653222 455555543221
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELC 312 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~ 312 (479)
......|+.+|++.|.+++.+++++ |++++++.||.|-.+...
T Consensus 142 -------------------------~~~~~~Y~~sK~al~~lt~~lA~el~~~gIrvN~I~PG~v~T~~~~--------- 187 (241)
T d2a4ka1 142 -------------------------AFGLAHYAAGKLGVVGLARTLALELARKGVRVNVLLPGLIQTPMTA--------- 187 (241)
T ss_dssp -------------------------HHHHHHHHHCSSHHHHHHHHHHHHHTTTTCEEEEEEECSBCCGGGT---------
T ss_pred -------------------------ccCccccchhhHHHHHHHHHHHHHHhHhCCEEeeeccCcCCCHHHH---------
Confidence 1225789999999999999999986 699999999998544211
Q ss_pred cccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 313 NRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 313 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
...........+..+ ..-+...+|+|++++.++..... .|+ ++.+.++
T Consensus 188 ----------~~~~~~~~~~~~~~p---------~~r~~~p~dva~~v~fL~S~~s~~itG~--~i~vDGG 237 (241)
T d2a4ka1 188 ----------GLPPWAWEQEVGASP---------LGRAGRPEEVAQAALFLLSEESAYITGQ--ALYVDGG 237 (241)
T ss_dssp ----------TSCHHHHHHHHHTST---------TCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred ----------hhhHhHHHHHHhCCC---------CCCCcCHHHHHHHHHHHhcchhCCCcCc--eEEeCCC
Confidence 111233334433333 22467899999999999975443 454 8887765
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.86 E-value=8.2e-21 Score=178.42 Aligned_cols=238 Identities=13% Similarity=0.049 Sum_probs=159.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc--CCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL--TGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~D 160 (479)
.+++|++|||||+++||++++++|+++|++|++.+|.... +.+..+.+.+. ...++..+.+|
T Consensus 2 rL~gK~alVTGas~GIG~aia~~la~~Ga~V~l~~r~~~~----------------l~~~~~~l~~~~~~~~~~~~~~~D 65 (272)
T d1xkqa_ 2 RFSNKTVIITGSSNGIGRTTAILFAQEGANVTITGRSSER----------------LEETRQIILKSGVSEKQVNSVVAD 65 (272)
T ss_dssp TTTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHTTTCCGGGEEEEECC
T ss_pred CCCCCEEEEeCcCcHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHhcCCCCCceEEEEcc
Confidence 4689999999999999999999999999999999986542 12222333222 22468899999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCcccc-----cccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEE
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAPYS-----MIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVK 227 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-----~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~ 227 (479)
++|+++++++++.. ++|++|||||....... +.+.++|.+++++|+.|+.++.+++... +.+..|+.
T Consensus 66 vs~~~~v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~d~~~~~~~~~~~vNl~~~~~~~~~~~p~m~~~~g~iI~~ 145 (272)
T d1xkqa_ 66 VTTEDGQDQIINSTLKQFGKIDVLVNNAGAAIPDAFGTTGTDQGIDIYHKTLKLNLQAVIEMTKKVKPHLVASKGEIVNV 145 (272)
T ss_dssp TTSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCTTCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCceEEEeCCcccCcccccccchhccHHHHHHHHHhhhhHHHHHHHhhcccccccCCccccc
Confidence 99999888877653 69999999998653221 2233457889999999999999887442 22324555
Q ss_pred eeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCc
Q 011707 228 LGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDE 304 (479)
Q Consensus 228 ~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~ 304 (479)
+||.+... +......|+.+|++.+.+++.++.++ |++++.|.||.|--+....
T Consensus 146 ~Ss~a~~~------------------------~~~~~~~Y~asKaal~~ltk~lA~el~~~gIrVN~I~PG~i~T~~~~~ 201 (272)
T d1xkqa_ 146 SSIVAGPQ------------------------AQPDFLYYAIAKAALDQYTRSTAIDLAKFGIRVNSVSPGMVETGFTNA 201 (272)
T ss_dssp CCGGGSSS------------------------CCCSSHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCBCSSHHHH
T ss_pred cchhcccc------------------------CCCCcchhhhHHHHHHHHHHHHHHHhcccCeEEEEEeeCCCcchhhhc
Confidence 55433211 22236889999999999999999884 8999999999986542110
Q ss_pred hhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC---CCCCCceEEEeCCC
Q 011707 305 TAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP---AQPGEFRVFNQFTE 381 (479)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~---~~~g~~~~~ni~~~ 381 (479)
.. . .................. ....-+...+|+|++++.++..+ --.|+ ++.+.|+
T Consensus 202 ~~------~----~~~~~~~~~~~~~~~~~~---------~PlgR~g~pediA~~v~fL~S~~as~~iTG~--~i~vDGG 260 (272)
T d1xkqa_ 202 MG------M----PDQASQKFYNFMASHKEC---------IPIGAAGKPEHIANIILFLADRNLSFYILGQ--SIVADGG 260 (272)
T ss_dssp TT------C----CHHHHHHHHHHHHHCTTT---------CTTSSCBCHHHHHHHHHHHHCHHHHTTCCSC--EEEESTT
T ss_pred cC------C----chHHHHHHHHHHHHHhcC---------CCCCCCcCHHHHHHHHHHHhCcchhCCccCe--EEEeCcC
Confidence 00 0 000000011111111111 11234678999999999988532 13465 8888775
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=99.86 E-value=9.7e-21 Score=174.32 Aligned_cols=204 Identities=17% Similarity=0.145 Sum_probs=151.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCe-------EEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYE-------VAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIG 159 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~-------V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 159 (479)
+.||||||+++||++++++|+++|++ |++.+|.... +.+....+. ..+.++.++.+
T Consensus 2 ~VvlITGas~GIG~aia~~la~~G~~~~~~~~~v~~~~r~~~~----------------l~~~~~~~~-~~g~~~~~~~~ 64 (240)
T d2bd0a1 2 HILLITGAGKGIGRAIALEFARAARHHPDFEPVLVLSSRTAAD----------------LEKISLECR-AEGALTDTITA 64 (240)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHTTTCTTCCEEEEEEESCHHH----------------HHHHHHHHH-TTTCEEEEEEC
T ss_pred CEEEEccCCCHHHHHHHHHHHHhCccccccCcEEEEEeCCHHH----------------HHHHHHHHH-hcCCcEEEEEe
Confidence 46899999999999999999999987 7777775432 112222222 23457889999
Q ss_pred ccCChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEee
Q 011707 160 DICDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLG 229 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~S 229 (479)
|++|+++++++++.. ++|++|||||...... ...++++|.+++++|+.|+..+.+++. +.+.+ +||++|
T Consensus 65 Dvt~~~~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~G-~Ii~is 143 (240)
T d2bd0a1 65 DISDMADVRRLTTHIVERYGHIDCLVNNAGVGRFGALSDLTEEDFDYTMNTNLKGTFFLTQALFALMERQHSG-HIFFIT 143 (240)
T ss_dssp CTTSHHHHHHHHHHHHHHTSCCSEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEEC
T ss_pred cCCCHHHHHHHHHHHHHHcCCcceeecccccccCCccccCCHHHHhhcCCEeehHHHHHHHHHhHHHHhcCCC-ceEEEe
Confidence 999999888877643 6999999999865443 334677899999999999999988774 34455 999999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|...+. +......|+.||++.+.+.+.++.++ |++++.+.||.|--+....
T Consensus 144 S~~~~~------------------------~~~~~~~Y~asK~al~~lt~~la~el~~~gIrvn~i~PG~v~T~~~~~-- 197 (240)
T d2bd0a1 144 SVAATK------------------------AFRHSSIYCMSKFGQRGLVETMRLYARKCNVRITDVQPGAVYTPMWGK-- 197 (240)
T ss_dssp CGGGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCBCSTTTCC--
T ss_pred chhhcC------------------------CCCCChHHHHHHHHHHHHHHHHHHHhCcCCeEEEEeeeCcccCchhhh--
Confidence 964331 22336899999999999999999884 7999999999986553110
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
+ . .+....+...+|+|++++.++..+..
T Consensus 198 ---------------------------------~-~-~~~~~~~~~PedvA~~v~~l~s~~~~ 225 (240)
T d2bd0a1 198 ---------------------------------V-D-DEMQALMMMPEDIAAPVVQAYLQPSR 225 (240)
T ss_dssp ---------------------------------C-C-STTGGGSBCHHHHHHHHHHHHTSCTT
T ss_pred ---------------------------------c-C-HhhHhcCCCHHHHHHHHHHHHcCCcc
Confidence 0 0 01112356789999999999987643
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.86 E-value=2e-20 Score=175.86 Aligned_cols=236 Identities=13% Similarity=0.071 Sum_probs=161.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc--CCCceeEEEccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL--TGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl 161 (479)
++||++|||||+++||.+++++|+++|++|++.+|.... +.+..+.+... ...++..+.+|+
T Consensus 2 L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~----------------l~~~~~~i~~~~~~~~~~~~~~~Dv 65 (274)
T d1xhla_ 2 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDR----------------LEETKQQILKAGVPAEKINAVVADV 65 (274)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHHTTCCGGGEEEEECCT
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHHcCCCCcceEEEEeeC
Confidence 579999999999999999999999999999999986432 12222233222 124688999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc---ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEee
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY---SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLG 229 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~---~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~S 229 (479)
+|+++++++++.. ++|++|||||...... ...+.++|.+++++|+.|+..+.+++.. .+.+ +++++|
T Consensus 66 ~~~~~v~~~~~~~~~~~G~iDilVnnAG~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~g-~ii~~s 144 (274)
T d1xhla_ 66 TEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQPVELYQKTFKLNFQAVIEMTQKTKEHLIKTKGE-IVNVSS 144 (274)
T ss_dssp TSHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCSCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEECC
T ss_pred CCHHHHHHHHHHHHHHcCCceEEEeecccccccccccccCCHHHHHHHHhhcccccccccccccccccccccc-cccchh
Confidence 9999888877653 6999999999653321 2224567899999999999999888754 3334 888888
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|..... +......|+.+|++.+.+++.++.++ |++++.|.||.|--|......
T Consensus 145 s~~~~~------------------------~~~~~~~Y~asKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~~ 200 (274)
T d1xhla_ 145 IVAGPQ------------------------AHSGYPYYACAKAALDQYTRCTAIDLIQHGVRVNSVSPGAVATGFMGAMG 200 (274)
T ss_dssp GGGSSS------------------------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCSSHHHHTT
T ss_pred hhhccc------------------------cCCCCceehhhhhHHHHHHHHHHHHHhHhCCceeeeccCCCcCchhhhhc
Confidence 743221 22336789999999999999999885 899999999998654211000
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC-C--CCCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP-A--QPGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~-~--~~g~~~~~ni~~~ 381 (479)
. .......+..++....... ...-+...+|+|++++.++..+ . -.|+ ++.+.|+
T Consensus 201 ~----------~~~~~~~~~~~~~~~~~~i---------PlgR~g~pediA~~v~fL~S~d~s~~itG~--~i~vDGG 257 (274)
T d1xhla_ 201 L----------PETASDKLYSFIGSRKECI---------PVGHCGKPEEIANIIVFLADRNLSSYIIGQ--SIVADGG 257 (274)
T ss_dssp C----------CHHHHHHHHHHHHHCTTTC---------TTSSCBCHHHHHHHHHHHHCHHHHTTCCSC--EEEESTT
T ss_pred c----------cchhhHHHHHHHHHHHcCC---------CCCCCcCHHHHHHHHHHHcCCccccCccCc--EEEeCcC
Confidence 0 0000000111222111111 1234578999999999888532 2 3565 8998875
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=7.4e-21 Score=177.02 Aligned_cols=221 Identities=18% Similarity=0.128 Sum_probs=155.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccC-CCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLT-GKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v~~Dl 161 (479)
.+++|++|||||+++||.++++.|+++|++|++.+|.... +.+..+++.... ..++.++.+|+
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~~~----------------l~~~~~~l~~~~~~~~~~~~~~Dl 70 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTVGN----------------IEELAAECKSAGYPGTLIPYRCDL 70 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHHTTCSSEEEEEECCT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHhcCCCceEEEEEccC
Confidence 3689999999999999999999999999999999986432 222233333322 24788999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHH----HcC-CcceEEEeec
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMK----EFR-QECHLVKLGT 230 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g-~~~~~V~~SS 230 (479)
+++++++++++.. ++|++|||||....... ..++++++..+++|+.++.++.+++. +.+ .+.+||++||
T Consensus 71 s~~~~v~~~v~~~~~~~g~iD~lVnnAg~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~~~~~~~~~g~Ii~isS 150 (257)
T d1xg5a_ 71 SNEEDILSMFSAIRSQHSGVDICINNAGLARPDTLLSGSTSGWKDMFNVNVLALSICTREAYQSMKERNVDDGHIININS 150 (257)
T ss_dssp TCHHHHHHHHHHHHHHHCCCSEEEECCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCCSCEEEEECC
T ss_pred CCHHHHHHHHHHHHHhcCCCCEEEecccccCCCccccccHHHHHhhhhhhhhHHHHHHHHHHHHHHHhccCCCceEEEec
Confidence 9999888877643 69999999998654333 34667889999999999999887763 333 2249999999
Q ss_pred cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH-----hCCceEEeecCeeecCCCCch
Q 011707 231 MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA-----WGIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 231 ~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~-----~gl~~~ivRp~~v~Gp~~~~~ 305 (479)
..-+.. .|......|+.+|++.+.+++.++.+ +|++++++-||.+-.+...
T Consensus 151 ~~~~~~----------------------~p~~~~~~Y~~sKaal~~ltr~la~el~~~~~~I~vn~i~PG~i~t~~~~-- 206 (257)
T d1xg5a_ 151 MSGHRV----------------------LPLSVTHFYSATKYAVTALTEGLRQELREAQTHIRATCISPGVVETQFAF-- 206 (257)
T ss_dssp GGGTSC----------------------CSCGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCBCSSHHH--
T ss_pred hHhcCC----------------------CCCcccHHHHHHHHHHHhCHHHHHHHHHhCCCCEEEEEEeCCCCCChhhh--
Confidence 653211 12233567999999999999999876 3799999999877543210
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
... ......+... .....++..+|+|++++.++..+..
T Consensus 207 ----~~~---------~~~~~~~~~~-------------~~~~r~~~pedvA~~v~fL~s~~a~ 244 (257)
T d1xg5a_ 207 ----KLH---------DKDPEKAAAT-------------YEQMKCLKPEDVAEAVIYVLSTPAH 244 (257)
T ss_dssp ----HHT---------TTCHHHHHHH-------------HC---CBCHHHHHHHHHHHHHSCTT
T ss_pred ----hcC---------hhhHHHHHhc-------------CCCCCCcCHHHHHHHHHHHhCChhc
Confidence 000 0001111111 1123467899999999999987644
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.86 E-value=1.1e-20 Score=176.80 Aligned_cols=237 Identities=14% Similarity=0.108 Sum_probs=155.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc--CCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL--TGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~D 160 (479)
.+++|++|||||+++||++++++|+++|++|++.+|.... +.+..+.+... ...++.++.+|
T Consensus 2 rl~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~r~~~~----------------l~~~~~~l~~~~~~~~~~~~~~~D 65 (264)
T d1spxa_ 2 RFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAER----------------LEETRQQILAAGVSEQNVNSVVAD 65 (264)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHHTTCCGGGEEEEECC
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHhcCCCcCceEEEEcc
Confidence 3689999999999999999999999999999999986542 11222222222 22468999999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCcc-----cccccccccchhhhhhHHHHHHHHHHHHHc---CCcceEEE
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAP-----YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF---RQECHLVK 227 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~-----~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~---g~~~~~V~ 227 (479)
++|.++++++++.. ++|++|||||..... ....+.++|++++++|+.|+.++.+++... +.+ .+|+
T Consensus 66 vt~~~~v~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~p~m~~~~g-~iI~ 144 (264)
T d1spxa_ 66 VTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKG-EIVN 144 (264)
T ss_dssp TTSHHHHHHHHHHHHHHHSCCCEEEECCC-------------CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEeecccccccCCccccccccCCHHHHHHHHHHhHHHHHHHHhhhCCccccccC-ccee
Confidence 99999988887653 799999999975321 112245678899999999999998887542 223 5555
Q ss_pred eec-cccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCC
Q 011707 228 LGT-MGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTD 303 (479)
Q Consensus 228 ~SS-~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~ 303 (479)
++| .+... +......|+.+|++.+.+++.++.++ |++++.|.||.|--+...
T Consensus 145 ~~S~~~~~~------------------------~~~~~~~Y~asKaal~~lt~~lA~el~~~gIrVN~V~PG~v~T~~~~ 200 (264)
T d1spxa_ 145 ISSIASGLH------------------------ATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGS 200 (264)
T ss_dssp ECCTTSSSS------------------------CCTTSHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBCCCC--
T ss_pred eeeeccccc------------------------cCCCchhhhhhhhhHHHHHHHHHHHhcccCeEEEEEeeCCCCCcchh
Confidence 554 33221 22236789999999999999999985 899999999998655322
Q ss_pred chhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCC-C--CCCCceEEEeCC
Q 011707 304 ETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANP-A--QPGEFRVFNQFT 380 (479)
Q Consensus 304 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~-~--~~g~~~~~ni~~ 380 (479)
....... ...........+....| ..-+...+|+|++++.++..+ . ..|+ ++.+.|
T Consensus 201 ~~~~~~~----------~~~~~~~~~~~~~~~~P---------l~R~g~pedvA~~v~fL~S~~~s~~itG~--~i~vDG 259 (264)
T d1spxa_ 201 AMGMPEE----------TSKKFYSTMATMKECVP---------AGVMGQPQDIAEVIAFLADRKTSSYIIGH--QLVVDG 259 (264)
T ss_dssp ----------------------HHHHHHHHHHCT---------TSSCBCHHHHHHHHHHHHCHHHHTTCCSC--EEEEST
T ss_pred ccCCcHH----------HHHHHHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCCcccCCccCc--eEEeCC
Confidence 1100000 00001111122211111 224567899999999988533 2 3565 888876
Q ss_pred C
Q 011707 381 E 381 (479)
Q Consensus 381 ~ 381 (479)
+
T Consensus 260 G 260 (264)
T d1spxa_ 260 G 260 (264)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=3.1e-21 Score=179.49 Aligned_cols=228 Identities=16% Similarity=0.130 Sum_probs=155.7
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhccc-CCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL-TGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v~~Dl~d 163 (479)
+||++|||||+++||.+++++|+++|++|++++|.... +.+..+.+.+. .+.++.++.+|++|
T Consensus 2 ~GKvalITGas~GIG~aia~~la~~Ga~V~i~~r~~~~----------------~~~~~~~l~~~~~~~~~~~~~~Dv~~ 65 (254)
T d2gdza1 2 NGKVALVTGAAQGIGRAFAEALLLKGAKVALVDWNLEA----------------GVQCKAALHEQFEPQKTLFIQCDVAD 65 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHTTTSCGGGEEEEECCTTS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHHhcCCCcEEEEEeecCC
Confidence 58999999999999999999999999999999986542 11222222222 23578899999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc------CCcceEEEeeccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF------RQECHLVKLGTMG 232 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~------g~~~~~V~~SS~~ 232 (479)
+++++++++.. ++|++|||||... +.++++++++|+.++.++.+++... +...+||++||..
T Consensus 66 ~~~v~~~~~~~~~~~G~iDilVnnAg~~~-------~~~~~~~~~~n~~~~~~~~~~~~~~m~~~~~~~~g~Iv~isS~~ 138 (254)
T d2gdza1 66 QQQLRDTFRKVVDHFGRLDILVNNAGVNN-------EKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLA 138 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCCCCC-------SSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEECCGG
T ss_pred HHHHHHHHHHHHHHcCCcCeecccccccc-------cccchheeeeehhhHHHHHHHHHHHHHHhhcCCCcEEEeeccHh
Confidence 99888887643 6999999999743 2346778999999999888777432 2223799999964
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHH--HHHH---hCCceEEeecCeeecCCCCchhh
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAF--TCKA---WGIRATDLNQGVVYGVRTDETAM 307 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~--~~~~---~gl~~~ivRp~~v~Gp~~~~~~~ 307 (479)
.+- +......|+.||++.+.+++. ++.+ +|++++.|.||.|--+...
T Consensus 139 ~~~------------------------~~~~~~~Y~asKaal~~ltrs~ala~e~~~~gIrVN~I~PG~i~T~~~~---- 190 (254)
T d2gdza1 139 GLM------------------------PVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILE---- 190 (254)
T ss_dssp GTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEEESCBSSHHHH----
T ss_pred hcc------------------------CCCCccchHHHHHHHHHHHHHHHHHHHhcCCCEEEEEEEcCCCCChhhh----
Confidence 331 223367899999999999985 3444 4799999999988543110
Q ss_pred hHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 308 HEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 308 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.+.+... .+.+......+...+ ...-+...+|+|++++.++.++...|+ ++.|.++
T Consensus 191 --~~~~~~~-~~~~~~~~~~~~~~~-------------p~~r~~~pedvA~~v~fL~s~~~itG~--~i~VdGG 246 (254)
T d2gdza1 191 --SIEKEEN-MGQYIEYKDHIKDMI-------------KYYGILDPPLIANGLITLIEDDALNGA--IMKITTS 246 (254)
T ss_dssp --GGGCHHH-HGGGGGGHHHHHHHH-------------HHHCCBCHHHHHHHHHHHHHCTTCSSC--EEEEETT
T ss_pred --hcccccc-ccccHHHHHHHHhcC-------------CCCCCcCHHHHHHHHHHHHcCCCCCCC--EEEECCC
Confidence 0000000 000000011111111 112356789999999999987665666 8988774
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.85 E-value=5.3e-21 Score=181.91 Aligned_cols=179 Identities=15% Similarity=0.040 Sum_probs=132.3
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
+.++||++|||||+++||++++++|+++|++|++.|+....... ......+.+..+.. ......+.+|+
T Consensus 3 m~l~gKvalITGas~GIG~aiA~~la~~Ga~Vvi~d~~~~~~~~-------~~~~~~~~~~~~~~----~~~~~~~~~d~ 71 (302)
T d1gz6a_ 3 LRFDGRVVLVTGAGGGLGRAYALAFAERGALVVVNDLGGDFKGV-------GKGSSAADKVVEEI----RRRGGKAVANY 71 (302)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECCCBCTTSC-------BCCSHHHHHHHHHH----HHTTCEEEEEC
T ss_pred cCcCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchhhhh-------hhhHHHHHHHHHHH----hhccccccccc
Confidence 35689999999999999999999999999999999875432100 00001111111111 12345567888
Q ss_pred CChHHHHHHhhh----c-CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc
Q 011707 162 CDFEFLSESFKS----F-EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~----~-~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~ 231 (479)
+|.++++++++. + ++|++|||||+..... ...++++|.+++++|+.|+.++.+++. +.+.+ +||++||.
T Consensus 72 ~~~~~~~~~v~~~~~~~G~iDiLVnNAGi~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G-~IV~isS~ 150 (302)
T d1gz6a_ 72 DSVEAGEKLVKTALDTFGRIDVVVNNAGILRDRSFSRISDEDWDIIQRVHLRGSFQVTRAAWDHMKKQNYG-RIIMTASA 150 (302)
T ss_dssp CCGGGHHHHHHHHHHHTSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EEEEECCH
T ss_pred chHHHHHHHHHHHHHHcCCCCEEEECCccCCCCChhhCCHHHHhhhhceeehhhHHHHHHhHHHHHhCCCc-EEEEeCCh
Confidence 888776665543 2 6999999999876543 334677899999999999999988773 44555 99999995
Q ss_pred c-cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCee
Q 011707 232 G-EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVV 297 (479)
Q Consensus 232 ~-v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v 297 (479)
. .++.+ ....|+.+|++.+.+++.++.++ |+++++|.||.+
T Consensus 151 ~~~~~~~-------------------------~~~~Y~asKaal~~lt~~la~E~~~~gIrVN~I~PG~~ 195 (302)
T d1gz6a_ 151 SGIYGNF-------------------------GQANYSAAKLGLLGLANTLVIEGRKNNIHCNTIAPNAG 195 (302)
T ss_dssp HHHHCCT-------------------------TCHHHHHHHHHHHHHHHHHHHHTGGGTEEEEEEEEECC
T ss_pred hhcCCCC-------------------------CcHHHHHHHHHHHHHHHHHHHHHhccCCceeeeCCCCC
Confidence 4 44433 36899999999999999999984 899999999876
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=5.2e-21 Score=176.26 Aligned_cols=176 Identities=15% Similarity=0.079 Sum_probs=136.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+.||+||||||+++||.+++++|+++|++|++++|.... +.+..+.... .+.++..+.+|++
T Consensus 4 ~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~----------------l~~~~~~~~~-~~~~~~~~~~Dvs 66 (244)
T d1yb1a_ 4 SVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHG----------------LEETAAKCKG-LGAKVHTFVVDCS 66 (244)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHH-TTCCEEEEECCTT
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHHh-cCCcEEEEEeeCC
Confidence 5689999999999999999999999999999999986542 1122222322 3467899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccccc-ccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccc
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSM-IDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMG 232 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~-~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~ 232 (479)
|+++++++++.. ++|++|||||........ .+++++..++++|+.|+.++.+++. +.+.+ +||++||..
T Consensus 67 ~~~~v~~~~~~i~~~~g~idilinnag~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~~~G-~Iv~isS~~ 145 (244)
T d1yb1a_ 67 NREDIYSSAKKVKAEIGDVSILVNNAGVVYTSDLFATQDPQIEKTFEVNVLAHFWTTKAFLPAMTKNNHG-HIVTVASAA 145 (244)
T ss_dssp CHHHHHHHHHHHHHHTCCCSEEEECCCCCCCCCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTCE-EEEEECCCC
T ss_pred CHHHHHHHHHHHHHHcCCCceeEeeccccccccccccchhHHHhhcceeeeccHHHHHHHhhhHHhcCCc-eEEEeecch
Confidence 999888877643 699999999987654333 4566788999999999999988763 44555 999999964
Q ss_pred cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH------hCCceEEeecCeeecC
Q 011707 233 EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA------WGIRATDLNQGVVYGV 300 (479)
Q Consensus 233 v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~------~gl~~~ivRp~~v~Gp 300 (479)
.+- +......|+.||++.+.+.+.++.+ .|++++++.||.|--+
T Consensus 146 ~~~------------------------~~~~~~~Y~asKaal~~~~~~La~El~~~~~~gI~V~~i~PG~v~T~ 195 (244)
T d1yb1a_ 146 GHV------------------------SVPFLLAYCSSKFAAVGFHKTLTDELAALQITGVKTTCLCPNFVNTG 195 (244)
T ss_dssp -CC------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEEETHHHHC
T ss_pred hcC------------------------CCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEcCCCCCh
Confidence 331 2223578999999999999999886 2799999999987433
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=99.85 E-value=3.7e-20 Score=174.06 Aligned_cols=243 Identities=14% Similarity=0.039 Sum_probs=164.2
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.+++||++|||||+++||++++++|+++|++|++.++..... +.+..+.+. ..+.++.++.+|+
T Consensus 14 ~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~---------------~~~~~~~~~-~~g~~~~~~~~D~ 77 (272)
T d1g0oa_ 14 ASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANSTES---------------AEEVVAAIK-KNGSDAACVKANV 77 (272)
T ss_dssp GCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSCHHH---------------HHHHHHHHH-HTTCCEEEEECCT
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCchHH---------------HHHHHHHHH-hhCCceeeEeCCC
Confidence 357899999999999999999999999999999998764321 111122222 2345789999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEeeccccc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLGTMGEY 234 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~SS~~v~ 234 (479)
+|++++.++++.. ++|++|||+|...... ...+.+++.+.+++|+.++..+++++...- ...++++++|....
T Consensus 78 ~~~~~v~~~~~~~~~~~g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s~~~~ 157 (272)
T d1g0oa_ 78 GVVEDIVRMFEEAVKIFGKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGSITGQ 157 (272)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECCGGGT
T ss_pred CCHHHHHHHHHHHHHHhCCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccccccc
Confidence 9999888887643 6999999999765433 334666788899999999999999887532 22367777764211
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhh
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEEL 311 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~ 311 (479)
. .+......|+.+|++.+.+++.++.++ |++++.|.||.|-.+... .+
T Consensus 158 --~---------------------~~~~~~~~Y~asKaal~~ltk~lA~e~~~~gIrVN~I~PG~v~T~~~~------~~ 208 (272)
T d1g0oa_ 158 --A---------------------KAVPKHAVYSGSKGAIETFARCMAIDMADKKITVNVVAPGGIKTDMYH------AV 208 (272)
T ss_dssp --C---------------------SSCSSCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCBSSHHHH------HH
T ss_pred --c---------------------ccccchhhHHHHHHHHHHHHHHHHHHhchhCeEEEEEccCCcCChHHH------HH
Confidence 1 022346789999999999999999985 899999999998544210 00
Q ss_pred hcccCCCCcccchHHHHHH-HHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 312 CNRLDYDGVFGTALNRFCV-QAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 312 ~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
......... ...-..... ...... ...-+...+|+|.+++.++..... .|+ ++.+.|+
T Consensus 209 ~~~~~~~~~-~~~~~~~~~~~~~~~~---------PlgR~~~peevA~~v~fL~s~~s~~itG~--~i~vDGG 269 (272)
T d1g0oa_ 209 CREYIPNGE-NLSNEEVDEYAAVQWS---------PLRRVGLPIDIARVVCFLASNDGGWVTGK--VIGIDGG 269 (272)
T ss_dssp GGGGSTTCT-TCCHHHHHHHHHHHSC---------TTCSCBCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred HHhhhhccc-ccchHHHHHHHHHccC---------CCCCCcCHHHHHHHHHHHhCchhcCccCc--eEeECCC
Confidence 000000000 000001111 111111 122468899999999999975443 455 8888775
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.5e-20 Score=173.69 Aligned_cols=228 Identities=11% Similarity=0.058 Sum_probs=164.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
+++|++|||||+++||+++++.|+++|++|++++|.... ++.+.+ ..++....+|+.+
T Consensus 4 l~gK~alITGas~GIG~aia~~la~~G~~Vi~~~r~~~~--------------------l~~~~~--~~~~~~~~~d~~~ 61 (245)
T d2ag5a1 4 LDGKVIILTAAAQGIGQAAALAFAREGAKVIATDINESK--------------------LQELEK--YPGIQTRVLDVTK 61 (245)
T ss_dssp TTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HGGGGG--STTEEEEECCTTC
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCHHH--------------------HHHHHh--ccCCceeeeeccc
Confidence 689999999999999999999999999999999986431 112221 2467888999999
Q ss_pred hHHHHHHhhhc-CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeeccccccCC
Q 011707 164 FEFLSESFKSF-EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGEYGTP 237 (479)
Q Consensus 164 ~~~~~~~~~~~-~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v~g~~ 237 (479)
.+.++...+.. ++|++|||||...... ...+.++|...+++|+.++..+.+++.. .+.+ +||++||... ..
T Consensus 62 ~~~~~~~~~~~~~id~lVn~ag~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~~~g-~Ii~isS~~~--~~ 138 (245)
T d2ag5a1 62 KKQIDQFANEVERLDVLFNVAGFVHHGTVLDCEEKDWDFSMNLNVRSMYLMIKAFLPKMLAQKSG-NIINMSSVAS--SV 138 (245)
T ss_dssp HHHHHHHHHHCSCCSEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEECCSBT--TT
T ss_pred cccccccccccccceeEEecccccCCCChhhCCHHHHHHHHHHhhccchhHHHhhCcccccCCCc-eeeeeechhh--cc
Confidence 88888777654 6999999999876543 3336678899999999999999887743 3444 8999988421 00
Q ss_pred CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhcc
Q 011707 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCNR 314 (479)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~ 314 (479)
.+......|+.+|++.+.+++.++.++ |+++++|.||.|-.|..... ...
T Consensus 139 ---------------------~~~~~~~~Y~~sKaal~~l~r~lA~e~~~~gIrvN~I~PG~i~T~~~~~~------~~~ 191 (245)
T d2ag5a1 139 ---------------------KGVVNRCVYSTTKAAVIGLTKSVAADFIQQGIRCNCVCPGTVDTPSLQER------IQA 191 (245)
T ss_dssp ---------------------BCCTTBHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEESCEECHHHHHH------HHH
T ss_pred ---------------------CCccchhHHHHHHHHHHHHHHHHHHHhhhhCcEEEEEeeceeechhhHhh------hhh
Confidence 022346889999999999999999985 79999999999976532110 000
Q ss_pred cCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 315 LDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 315 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
......+...+....| ..-+...+|+++++..++..... .|+ ++.|.++
T Consensus 192 -------~~~~~~~~~~~~~~~p---------l~R~~~pedva~~v~fL~s~~s~~iTG~--~i~VDGG 242 (245)
T d2ag5a1 192 -------RGNPEEARNDFLKRQK---------TGRFATAEEIAMLCVYLASDESAYVTGN--PVIIDGG 242 (245)
T ss_dssp -------SSSHHHHHHHHHHTCT---------TSSCEEHHHHHHHHHHHHSGGGTTCCSC--EEEECTT
T ss_pred -------hhhhHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhChhhCCCcCc--eEEeCCC
Confidence 0011122333333322 23467889999999999975443 455 8888764
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=99.85 E-value=1.2e-20 Score=177.54 Aligned_cols=232 Identities=14% Similarity=0.115 Sum_probs=156.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.++||+||||||+++||++++++|+++|++|++++|.... +++.....+.++..+.+|++
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~~~--------------------l~~~~~~~~~~~~~~~~Dv~ 61 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSAER--------------------LAELETDHGDNVLGIVGDVR 61 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH--------------------HHHHHHHHGGGEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH--------------------HHHHHHHcCCCeeEEecccc
Confidence 4689999999999999999999999999999999986431 11222222357899999999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCcccccc------cccccchhhhhhHHHHHHHHHHHH----HcCCcceEEE
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMI------DRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVK 227 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~------~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~ 227 (479)
+.++++++++.. ++|++|||||......... ..++|.+++++|+.|+..+.+++. +.+ + ++|+
T Consensus 62 ~~~~~~~~~~~~~~~~g~idilvnnAG~~~~~~~~~~~~~e~~~~~~~~~~~vNl~g~~~~~~~~~p~m~~~~-g-~iI~ 139 (276)
T d1bdba_ 62 SLEDQKQAASRCVARFGKIDTLIPNAGIWDYSTALVDLPEESLDAAFDEVFHINVKGYIHAVKACLPALVASR-G-NVIF 139 (276)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEECCCCCCCTTCCGGGSCTTTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHT-C-EEEE
T ss_pred cHHHHHHHHHHHHHHhCCcccccccccccCCCCccccccccchhhhhhHHHHHhhHHHHHHHHHHHHHHHhcC-C-Ccee
Confidence 999888877643 7999999999754332211 122478899999999999988774 333 3 7787
Q ss_pred eeccc-cccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh--CCceEEeecCeeecCCCCc
Q 011707 228 LGTMG-EYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW--GIRATDLNQGVVYGVRTDE 304 (479)
Q Consensus 228 ~SS~~-v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~--gl~~~ivRp~~v~Gp~~~~ 304 (479)
+||.. ..+ ......|+.+|++.+.+++.++.++ +++++.|.||.|--+...+
T Consensus 140 i~S~~~~~~-------------------------~~~~~~Y~asKaal~~ltr~lA~ela~~IrVN~I~PG~i~T~~~~~ 194 (276)
T d1bdba_ 140 TISNAGFYP-------------------------NGGGPLYTAAKHAIVGLVRELAFELAPYVRVNGVGSGGINSDLRGP 194 (276)
T ss_dssp ECCGGGTST-------------------------TSSCHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCSCCCCC
T ss_pred eeechhccC-------------------------CCCCchHHHHHHHHHHHHHHHHHHhhcceEEcccCCCCEecCcCCc
Confidence 77743 222 2236789999999999999999986 4999999999986553222
Q ss_pred hhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhC---CCCCCCceEEEeCCC
Q 011707 305 TAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN---PAQPGEFRVFNQFTE 381 (479)
Q Consensus 305 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~---~~~~g~~~~~ni~~~ 381 (479)
... +. ... ...-..+...+....| ..-+...+|+|.+++.++.. .-..|+ ++++.|+
T Consensus 195 ~~~--~~----~~~---~~~~~~~~~~~~~~~P---------lgR~g~peeva~~v~fL~S~~~a~~itG~--~i~VDGG 254 (276)
T d1bdba_ 195 SSL--GM----GSK---AISTVPLADMLKSVLP---------IGRMPEVEEYTGAYVFFATRGDAAPATGA--LLNYDGG 254 (276)
T ss_dssp GGG--C----------------CHHHHHTTTCT---------TSSCCCGGGGSHHHHHHHCHHHHTTCSSC--EEEESSS
T ss_pred cch--hh----hhh---ccCcHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHcCCcccCCeeCc--EEEECcC
Confidence 100 00 000 0000111222222212 22356789999999887742 223465 8888764
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=99.84 E-value=1.5e-20 Score=174.52 Aligned_cols=222 Identities=15% Similarity=0.104 Sum_probs=153.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhc-ccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWK-SLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~v~~Dl 161 (479)
.+++|+||||||+++||..++++|+++|++|++++|..... +.+.+.. .....++.++.+|+
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~-----------------~~~~~~~~~~~~~~~~~~~~d~ 64 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENP-----------------TALAELKAINPKVNITFHTYDV 64 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCH-----------------HHHHHHHHHCTTSEEEEEECCT
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccH-----------------HHHHHHHhhCCCCCEEEEEeec
Confidence 46899999999999999999999999999999887654311 1122222 22335899999999
Q ss_pred C-ChHHHHHHhhhc-----CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHc------CCcceEEEee
Q 011707 162 C-DFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF------RQECHLVKLG 229 (479)
Q Consensus 162 ~-d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~------g~~~~~V~~S 229 (479)
+ +.++++++++.. ++|++|||||.. ++++++.++++|+.|+.++.+++... +...+||++|
T Consensus 65 ~~~~~~~~~~~~~~~~~~g~iDilvnnAG~~-------~~~~~~~~~~vNl~g~~~~~~~~~~~m~~~~~~~~g~Ii~is 137 (254)
T d1sbya1 65 TVPVAESKKLLKKIFDQLKTVDILINGAGIL-------DDHQIERTIAINFTGLVNTTTAILDFWDKRKGGPGGIIANIC 137 (254)
T ss_dssp TSCHHHHHHHHHHHHHHHSCCCEEEECCCCC-------CTTCHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred CCCHHHHHHHHHHHHHHcCCCCEEEeCCCCC-------CHHHHHHHHHHHhHHHHHHHHHHHHHhhhcccCCCceEEEEe
Confidence 8 555566655432 699999999963 34557889999999999999877542 2224899999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|...+. +......|+.||++...+++.++.++ |++++.|.||.|..+..+
T Consensus 138 S~~~~~------------------------~~~~~~~Y~asKaal~~~t~~la~el~~~gIrVn~I~PG~v~T~~~~--- 190 (254)
T d1sbya1 138 SVTGFN------------------------AIHQVPVYSASKAAVVSFTNSLAKLAPITGVTAYSINPGITRTPLVH--- 190 (254)
T ss_dssp CGGGTS------------------------CCTTSHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEEEECSEESHHHH---
T ss_pred chhhcc------------------------CCCCCHHHHHHHHHHHHHHHHHHhhccccCeEEEEEEeCCCcCcccc---
Confidence 954431 22347899999999999999999874 899999999999754100
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
.+-+..+. . ..+.....+ +.....+++|++++.+++... .|+ ++.+.++
T Consensus 191 ---~~~~~~~~----~----~~~~~~~~~------------~~~~~~e~va~~~~~~~~~~~-tG~--vi~vdgG 239 (254)
T d1sbya1 191 ---TFNSWLDV----E----PRVAELLLS------------HPTQTSEQCGQNFVKAIEANK-NGA--IWKLDLG 239 (254)
T ss_dssp ---SCCCGGGS----C----TTHHHHHTT------------SCCEEHHHHHHHHHHHHHHCC-TTC--EEEEETT
T ss_pred ---ccccchhH----H----HHHHhcccc------------CCCCCHHHHHHHHHHhhhCCC-CCC--EEEECCC
Confidence 00000000 0 001111111 123468899999998887653 565 8888765
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=99.84 E-value=2.1e-20 Score=174.26 Aligned_cols=229 Identities=16% Similarity=0.143 Sum_probs=158.4
Q ss_pred CCCCcEEEEEcCCc--hhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDG--YCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG--~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.++||++|||||+| +||.+++++|+++|++|++.++..... +..+.... ...+..++.+|
T Consensus 5 ~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~~~~-----------------~~~~~~~~-~~~~~~~~~~D 66 (256)
T d1ulua_ 5 DLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAERLR-----------------PEAEKLAE-ALGGALLFRAD 66 (256)
T ss_dssp CCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSGGGH-----------------HHHHHHHH-HTTCCEEEECC
T ss_pred CCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcHHHH-----------------HHHHHhhh-ccCcccccccc
Confidence 36899999999998 899999999999999999888753311 11111111 12467789999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCcc-----cccccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEee
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAP-----YSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKLG 229 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~-----~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~S 229 (479)
++|+++++++++.. ++|++|||||..... ..+...+++...+++|+.++..+.+++...- .+.++|++|
T Consensus 67 ~~~~~~v~~~~~~~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~~~~~~~~~~~G~Iv~is 146 (256)
T d1ulua_ 67 VTQDEELDALFAGVKEAFGGLDYLVHAIAFAPREAMEGRYIDTRRQDWLLALEVSAYSLVAVARRAEPLLREGGGIVTLT 146 (256)
T ss_dssp TTCHHHHHHHHHHHHHHHSSEEEEEECCCCCCHHHHSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCceEEEeccccccccccccchhhhhhhhhhHhhhhhHHHHHHHHHHHHHHhccCCEEEEEe
Confidence 99999888887643 699999999975321 1233445677889999999999998876431 123899999
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
|..... +......|+.+|++.+.+++.++.++ |++++.+.||.|.-+......
T Consensus 147 S~~~~~------------------------~~~~~~~Y~asKaal~~ltr~lA~ela~~gIrVN~I~PG~i~t~~~~~~~ 202 (256)
T d1ulua_ 147 YYASEK------------------------VVPKYNVMAIAKAALEASVRYLAYELGPKGVRVNAISAGPVRTVAARSIP 202 (256)
T ss_dssp CGGGTS------------------------BCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEEEECCC---------
T ss_pred ehHhcC------------------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCCEEeeeccceeeeccccchh
Confidence 854331 22336889999999999999999985 799999999998765432110
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
....+...+.+..| ..-+...+|+|++++.++..... .|+ ++.+.++
T Consensus 203 -----------------~~~~~~~~~~~~~p---------l~R~~~pedvA~~v~fL~S~~s~~itG~--~i~VDGG 251 (256)
T d1ulua_ 203 -----------------GFTKMYDRVAQTAP---------LRRNITQEEVGNLGLFLLSPLASGITGE--VVYVDAG 251 (256)
T ss_dssp ------------------CHHHHHHHHHHST---------TSSCCCHHHHHHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred -----------------hhHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCchhCCccCC--eEEECcC
Confidence 01122333332222 22356789999999999875443 455 8888764
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.83 E-value=2e-20 Score=173.76 Aligned_cols=224 Identities=13% Similarity=0.083 Sum_probs=154.8
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFL 167 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~ 167 (479)
++|||||+++||..++++|+++|++|++.+|..... +.++.. ...++.+|+++.+++
T Consensus 2 TAlVTGas~GiG~aiA~~la~~Ga~V~i~~r~~~~~-----------------~~~~~~------~~~~~~~dv~~~~~~ 58 (252)
T d1zmta1 2 TAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQK-----------------DELEAF------AETYPQLKPMSEQEP 58 (252)
T ss_dssp EEEESSTTSTTHHHHHHHHHHTTCEEEECCGGGGSH-----------------HHHHHH------HHHCTTSEECCCCSH
T ss_pred EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHH-----------------HHHHhh------hCcEEEeccCCHHHH
Confidence 789999999999999999999999999988754321 111111 122345788888777
Q ss_pred HHHhhhc-----CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeeccccccC
Q 011707 168 SESFKSF-----EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTMGEYGT 236 (479)
Q Consensus 168 ~~~~~~~-----~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~~v~g~ 236 (479)
+++++.. ++|++|||||.... +....+.++|.+++++|+.++.++.+++. +.+.+ +||++||...+.
T Consensus 59 ~~~~~~~~~~~G~iDiLVnNAg~~~~~~~~~~~~~e~~~~~~~vnl~~~~~~~~~~~~~m~~~~~G-~IV~isS~~~~~- 136 (252)
T d1zmta1 59 AELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSG-HIIFITSATPFG- 136 (252)
T ss_dssp HHHHHHHHHHHSCCCEEEEECCCCCCCCCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCC-EEEEECCSTTTS-
T ss_pred HHHHHHHHHHcCCCCEEEECCcCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhcccccc-eeeccccccccc-
Confidence 6665432 69999999997532 22334667889999999999999988763 34445 999999965332
Q ss_pred CCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhhHhhhc
Q 011707 237 PNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCN 313 (479)
Q Consensus 237 ~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~ 313 (479)
+......|+.+|++.+.+++.++.++ |++++.|.||.|-.+..........
T Consensus 137 -----------------------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~I~PG~i~T~~~~~~~~~~~--- 190 (252)
T d1zmta1 137 -----------------------PWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEP--- 190 (252)
T ss_dssp -----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEESSBCCBTCCSSCBHHH---
T ss_pred -----------------------ccccccccccccccHHHHHHHHHHHhcccCcEEEEEecCCCcCcchhhhhhccc---
Confidence 22336789999999999999999885 7999999999987654321100000
Q ss_pred ccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 314 RLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 314 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
...-......+.+..+ ..-+...+|+|.+++.++..... .|+ ++.+.|+
T Consensus 191 --------~~~~~e~~~~~~~~~p---------l~R~g~pedvA~~v~fL~S~~s~~iTG~--~i~vdGG 241 (252)
T d1zmta1 191 --------WKTNPEHVAHVKKVTA---------LQRLGTQKELGELVAFLASGSCDYLTGQ--VFWLAGG 241 (252)
T ss_dssp --------HTTCHHHHHHHHHHSS---------SSSCBCHHHHHHHHHHHHTTSCGGGTTC--EEEESTT
T ss_pred --------ccCCHHHHHHHHhcCC---------CCCCcCHHHHHHHHHHHhCchhcCCcCC--eEEECCC
Confidence 0001122333333222 12367899999999999976554 455 8988775
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=99.82 E-value=2.5e-19 Score=170.36 Aligned_cols=233 Identities=14% Similarity=0.107 Sum_probs=161.2
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..++||++|||||+|+||.+++++|+++|++|++++|.... +.+..+++....+..+..+.+|+
T Consensus 21 ~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~----------------l~~~~~~l~~~~g~~~~~~~~D~ 84 (294)
T d1w6ua_ 21 NSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDV----------------LKATAEQISSQTGNKVHAIQCDV 84 (294)
T ss_dssp TTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHHHHSSCEEEEECCT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHH----------------HHHHHHHHHHhcCCceEEEEecc
Confidence 35789999999999999999999999999999999986542 22233333333456788999999
Q ss_pred CChHHHHHHhhhc-----CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHHH----HcCCcceEEEeecc
Q 011707 162 CDFEFLSESFKSF-----EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAMK----EFRQECHLVKLGTM 231 (479)
Q Consensus 162 ~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a~----~~g~~~~~V~~SS~ 231 (479)
++.++++++++.. ++|++|||||....... ..+..++...+.+|+.+...+...+. ..+....++.+||.
T Consensus 85 ~~~~~v~~~~~~~~~~~g~iDilvnnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~i~~~ss~ 164 (294)
T d1w6ua_ 85 RDPDMVQNTVSELIKVAGHPNIVINNAAGNFISPTERLSPNAWKTITDIVLNGTAFVTLEIGKQLIKAQKGAAFLSITTI 164 (294)
T ss_dssp TCHHHHHHHHHHHHHHTCSCSEEEECCCCCCCSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCT
T ss_pred cChHHHHHHhhhhhhhccccchhhhhhhhccccccccchhhhhhhheeeecccchhhhhhhhcccccccccccccccccc
Confidence 9999888776543 69999999997654432 23445667778889988877765542 22333367777764
Q ss_pred ccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchhhh
Q 011707 232 GEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETAMH 308 (479)
Q Consensus 232 ~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~ 308 (479)
.... +......|+.+|++.+.+++.++.++ |+++++|.||.|-.+.....
T Consensus 165 ~~~~------------------------~~~~~~~YsasKaal~~ltk~lA~ela~~gIrVN~I~PG~i~T~~~~~~--- 217 (294)
T d1w6ua_ 165 YAET------------------------GSGFVVPSASAKAGVEAMSKSLAAEWGKYGMRFNVIQPGPIKTKGAFSR--- 217 (294)
T ss_dssp HHHH------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC---------
T ss_pred hhhh------------------------cccccchHHHHHHHHHHHHHHHHHHHhHhCeEEEEEccCccccchhhhc---
Confidence 3221 11236789999999999999999885 79999999999976542110
Q ss_pred HhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC--CCCCceEEEeCCC
Q 011707 309 EELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA--QPGEFRVFNQFTE 381 (479)
Q Consensus 309 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~--~~g~~~~~ni~~~ 381 (479)
.+.. ...........| ..-+...+|+|.++..++.... -.|+ ++.+.|+
T Consensus 218 ------~~~~-------~~~~~~~~~~~p---------l~R~~~pediA~~v~fL~sd~s~~itG~--~i~vDGG 268 (294)
T d1w6ua_ 218 ------LDPT-------GTFEKEMIGRIP---------CGRLGTVEELANLAAFLCSDYASWINGA--VIKFDGG 268 (294)
T ss_dssp ------CCTT-------SHHHHHHHTTCT---------TSSCBCHHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred ------cCCc-------HHHHHHHhhcCC---------CCCCCCHHHHHHHHHHHhCchhcCCCCc--EEEECCC
Confidence 0000 122233333222 2245678999999999986544 3455 8988875
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.82 E-value=3.7e-20 Score=172.82 Aligned_cols=178 Identities=10% Similarity=0.021 Sum_probs=135.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHh---CCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcc-cCCCceeEEE
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSN---KGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS-LTGKNIELYI 158 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~---~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~v~ 158 (479)
.+++|.++||||+++||.+++++|++ +|++|++++|.... +.+..+.+.. ..+.++.++.
T Consensus 3 ~L~gKvalITGas~GIG~aiA~~lA~~~~~G~~Vv~~~r~~~~----------------l~~~~~~l~~~~~~~~~~~~~ 66 (259)
T d1oaaa_ 3 GLGCAVCVLTGASRGFGRALAPQLARLLSPGSVMLVSARSESM----------------LRQLKEELGAQQPDLKVVLAA 66 (259)
T ss_dssp CCBSEEEEESSCSSHHHHHHHHHHHTTBCTTCEEEEEESCHHH----------------HHHHHHHHHHHCTTSEEEEEE
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHhcccCCCEEEEEECCHHH----------------HHHHHHHHHhhcCCceEEEEE
Confidence 56799999999999999999999986 69999999986542 1122222222 1234789999
Q ss_pred cccCChHHHHHHhhhc---------CCCEEEEcccccCcc----cccccccccchhhhhhHHHHHHHHHHHHHc-----C
Q 011707 159 GDICDFEFLSESFKSF---------EPDAVVHFGEQRSAP----YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-----R 220 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~---------~~D~Vih~A~~~~~~----~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-----g 220 (479)
+|++|+++++++++.. .+|++|||||..... ....++++|.+++++|+.|+..+.+++... +
T Consensus 67 ~Dvs~~~~v~~l~~~~~~~~~~~~~~~~~lvnnag~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~~~ 146 (259)
T d1oaaa_ 67 ADLGTEAGVQRLLSAVRELPRPEGLQRLLLINNAATLGDVSKGFLNVNDLAEVNNYWALNLTSMLCLTSGTLNAFQDSPG 146 (259)
T ss_dssp CCTTSHHHHHHHHHHHHHSCCCTTCCEEEEEECCCCCCCCSSCGGGCCCHHHHHHHHHHHTHHHHHHHHHHHHTSCCCTT
T ss_pred ccCCCHHHHHHHHHHHHHhhhhccCceEEEEecccccccCCCCccccCCHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence 9999999988886431 467999999975421 233466678899999999999999988653 1
Q ss_pred CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-CCceEEeecCeeec
Q 011707 221 QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-GIRATDLNQGVVYG 299 (479)
Q Consensus 221 ~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-gl~~~ivRp~~v~G 299 (479)
...+||++||...+. +......|+.||++.+.+++.++.+. |++++.|.||.|-.
T Consensus 147 ~~g~Iv~isS~~~~~------------------------~~~~~~~Y~asKaal~~lt~~la~e~~gIrVn~v~PG~i~T 202 (259)
T d1oaaa_ 147 LSKTVVNISSLCALQ------------------------PYKGWGLYCAGKAARDMLYQVLAAEEPSVRVLSYAPGPLDN 202 (259)
T ss_dssp CEEEEEEECCGGGTS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHCTTEEEEEEECCSBSS
T ss_pred CcccccccccccccC------------------------CCccchHHHHHHHHHHHHHHHHHhCCCCCEEEEEEcCCCCC
Confidence 234899999954331 22347899999999999999999874 89999999998865
Q ss_pred C
Q 011707 300 V 300 (479)
Q Consensus 300 p 300 (479)
+
T Consensus 203 ~ 203 (259)
T d1oaaa_ 203 D 203 (259)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d2fr1a1 c.2.1.2 (A:1657-1915) Erythromycin synthase, eryAI, 1st ketoreductase module {Saccharopolyspora erythraea [TaxId: 1836]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Erythromycin synthase, eryAI, 1st ketoreductase module species: Saccharopolyspora erythraea [TaxId: 1836]
Probab=99.81 E-value=7e-19 Score=164.13 Aligned_cols=212 Identities=16% Similarity=0.127 Sum_probs=151.1
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.+++||||||+|+||.+++++|+++|+ +|+++.|...... ...+..+++.. .+.++.++.+|++|
T Consensus 8 p~gt~lVTGgs~GIG~a~a~~la~~Ga~~vvl~~R~~~~~~-------------~~~~~~~~l~~-~g~~v~~~~~Dv~d 73 (259)
T d2fr1a1 8 PTGTVLVTGGTGGVGGQIARWLARRGAPHLLLVSRSGPDAD-------------GAGELVAELEA-LGARTTVAACDVTD 73 (259)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHHTCSEEEEEESSGGGST-------------THHHHHHHHHH-TTCEEEEEECCTTC
T ss_pred CcCEEEEECCCcHHHHHHHHHHHHCCCCEEEEEeCCccCHH-------------HHHHHHHHHHh-ccccccccccccch
Confidence 467999999999999999999999998 4777776432110 11122223322 34689999999999
Q ss_pred hHHHHHHhhhc----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecc-ccccCC
Q 011707 164 FEFLSESFKSF----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTM-GEYGTP 237 (479)
Q Consensus 164 ~~~~~~~~~~~----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~-~v~g~~ 237 (479)
.++++++++.. ++|.||||||...... ...+++++..++++|+.|+.++.++....+.+ +||++||. +.+|.+
T Consensus 74 ~~~~~~~~~~i~~~~~i~~vv~~ag~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~-~iv~~SS~a~~~g~~ 152 (259)
T d2fr1a1 74 RESVRELLGGIGDDVPLSAVFHAAATLDDGTVDTLTGERIERASRAKVLGARNLHELTRELDLT-AFVLFSSFASAFGAP 152 (259)
T ss_dssp HHHHHHHHHTSCTTSCEEEEEECCCCCCCCCGGGCCHHHHHHHTHHHHHHHHHHHHHHTTSCCS-EEEEEEEHHHHTCCT
T ss_pred HHHHHHhhccccccccccccccccccccccccccccHHHHHHHhhhhccchhHHHHHhhccCCc-eEeeecchhhccCCc
Confidence 99999988754 5899999999865433 33366678888999999999999988877666 89999994 444433
Q ss_pred CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHhCCceEEeecCeeecCCCCchhhhHhhhcccCC
Q 011707 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAWGIRATDLNQGVVYGVRTDETAMHEELCNRLDY 317 (479)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~ 317 (479)
....|+.+|...+.+.+.+.. .|++++.|.||.+.+++...
T Consensus 153 -------------------------~~~~YaAaka~l~~la~~~~~-~Gi~v~~I~pg~~~~~g~~~------------- 193 (259)
T d2fr1a1 153 -------------------------GLGGYAPGNAYLDGLAQQRRS-DGLPATAVAWGTWAGSGMAE------------- 193 (259)
T ss_dssp -------------------------TCTTTHHHHHHHHHHHHHHHH-TTCCCEEEEECCBC-------------------
T ss_pred -------------------------ccHHHHHHHHhHHHHHHHHHh-CCCCEEECCCCcccCCcccc-------------
Confidence 267899999999999887654 59999999999887764211
Q ss_pred CCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC
Q 011707 318 DGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ 369 (479)
Q Consensus 318 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~ 369 (479)
..+...+.. . -...+..+++++++..++.....
T Consensus 194 ---------~~~~~~~~~---------~-G~~~~~~~~~~~~l~~~l~~~~~ 226 (259)
T d2fr1a1 194 ---------GPVADRFRR---------H-GVIEMPPETACRALQNALDRAEV 226 (259)
T ss_dssp ---------------CTT---------T-TEECBCHHHHHHHHHHHHHTTCS
T ss_pred ---------chHHHHHHh---------c-CCCCCCHHHHHHHHHHHHhCCCc
Confidence 111111111 0 12457799999999999987654
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.2e-18 Score=161.51 Aligned_cols=222 Identities=18% Similarity=0.159 Sum_probs=154.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+++||++|||||+++||.+++++|+++|++|++++|..... .+..+. .......+..|+.
T Consensus 2 slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~~~~----------------~~~~~~----l~~~~~~~~~~~~ 61 (248)
T d2o23a1 2 SVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPNSGG----------------EAQAKK----LGNNCVFAPADVT 61 (248)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTTSSH----------------HHHHHH----HCTTEEEEECCTT
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCChHHH----------------HHHHHH----hCCCccccccccc
Confidence 46899999999999999999999999999999999864321 111111 2357788899999
Q ss_pred ChHHHHHHhhhc-----CCCEEEEcccccCccc-------ccccccccchhhhhhHHHHHHHHHHHHHc----------C
Q 011707 163 DFEFLSESFKSF-----EPDAVVHFGEQRSAPY-------SMIDRSRAVFTQHNNVIGTLNVLFAMKEF----------R 220 (479)
Q Consensus 163 d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-------~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----------g 220 (479)
+.+.+++.+... ..|.++++++...... ...+.+++.+++++|+.++.++.+++... +
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vnl~~~~~~~~~~~~~~~~~~~~~~~~ 141 (248)
T d2o23a1 62 SEKDVQTALALAKGKFGRVDVAVNCAGIAVASKTYNLKKGQTHTLEDFQRVLDVNLMGTFNVIRLVAGEMGQNEPDQGGQ 141 (248)
T ss_dssp CHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSEETTTTEECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCTTSC
T ss_pred ccccccccccccccccccccccccccccccCCCcccccccccchHHHHHHHHhHHHHHHHHHHHHhHHHHHHhhhhccCC
Confidence 887666554432 6899999887643221 22234567889999999999999988543 2
Q ss_pred CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCee
Q 011707 221 QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVV 297 (479)
Q Consensus 221 ~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v 297 (479)
.+ +||++||...+. +......|+.+|++.+.+++.++.++ |++++.|.||.+
T Consensus 142 ~G-~Ii~isS~~~~~------------------------~~~~~~~Y~asKaal~~lt~~la~e~~~~gIrvN~I~PG~i 196 (248)
T d2o23a1 142 RG-VIINTASVAAFE------------------------GQVGQAAYSASKGGIVGMTLPIARDLAPIGIRVMTIAPGLF 196 (248)
T ss_dssp CE-EEEEECCTHHHH------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCB
T ss_pred ce-EEEEecchhhcc------------------------CCCCchHHHHHHHHHHHHHHHHHHHhcccCcceeeeccCce
Confidence 33 899999965431 22346889999999999999999985 799999999998
Q ss_pred ecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEE
Q 011707 298 YGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFN 377 (479)
Q Consensus 298 ~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~n 377 (479)
.-+.... ....+........++ ..-+...+|+|++++.+++..--.|+ +.+
T Consensus 197 ~T~~~~~-------------------~~~~~~~~~~~~~pl--------~~R~g~peevA~~v~fL~s~~~itGq--~I~ 247 (248)
T d2o23a1 197 GTPLLTS-------------------LPEKVCNFLASQVPF--------PSRLGDPAEYAHLVQAIIENPFLNGE--VIR 247 (248)
T ss_dssp CCC-----------------------------CHHHHTCSS--------SCSCBCHHHHHHHHHHHHHCTTCCSC--EEE
T ss_pred ecchhhc-------------------CCHHHHHHHHhcCCC--------CCCCcCHHHHHHHHHHHHhCCCCCce--EeE
Confidence 6553211 111112222222111 01356889999999999886544555 665
Q ss_pred e
Q 011707 378 Q 378 (479)
Q Consensus 378 i 378 (479)
|
T Consensus 248 v 248 (248)
T d2o23a1 248 L 248 (248)
T ss_dssp E
T ss_pred C
Confidence 4
|
| >d1jtva_ c.2.1.2 (A:) Human estrogenic 17beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Human estrogenic 17beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=5.3e-19 Score=166.88 Aligned_cols=179 Identities=17% Similarity=0.118 Sum_probs=133.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.|.||||||+++||.+++++|+++|++|+.+++..+.... ...+.+..+... ..+.++..+.+|++|.+
T Consensus 2 kkVvlITGassGIG~a~A~~la~~Ga~v~~v~~~~~~~~~----------~~~l~~~~~~~~-~~~~~~~~~~~Dv~~~~ 70 (285)
T d1jtva_ 2 RTVVLITGCSSGIGLHLAVRLASDPSQSFKVYATLRDLKT----------QGRLWEAARALA-CPPGSLETLQLDVRDSK 70 (285)
T ss_dssp CEEEEESCCSSHHHHHHHHHHHTCTTCCEEEEEEESCGGG----------THHHHHHHHHTT-CCTTSEEEEECCTTCHH
T ss_pred CCEEEEccCCCHHHHHHHHHHHHCCCCeEEEEEecCChhh----------hHHHHHHHHHHh-ccCCceEEEeccccchH
Confidence 4678999999999999999999999998776654322111 011112222221 22458999999999999
Q ss_pred HHHHHhhhc---CCCEEEEcccccCcccc-cccccccchhhhhhHHHHHHHHHHH----HHcCCcceEEEeeccccccCC
Q 011707 166 FLSESFKSF---EPDAVVHFGEQRSAPYS-MIDRSRAVFTQHNNVIGTLNVLFAM----KEFRQECHLVKLGTMGEYGTP 237 (479)
Q Consensus 166 ~~~~~~~~~---~~D~Vih~A~~~~~~~~-~~~~~~~~~~~~~Nv~g~~~ll~~a----~~~g~~~~~V~~SS~~v~g~~ 237 (479)
+++++++.. .+|++|||||....... ..+.+++..++++|+.|+.++.+++ ++.+.+ +||++||....-
T Consensus 71 ~~~~~~~~~~~g~idilvnnag~~~~~~~~~~~~e~~~~~~~vN~~g~~~~~~~~lp~m~~~~~G-~Iv~isS~~g~~-- 147 (285)
T d1jtva_ 71 SVAAARERVTEGRVDVLVCNAGLGLLGPLEALGEDAVASVLDVNVVGTVRMLQAFLPDMKRRGSG-RVLVTGSVGGLM-- 147 (285)
T ss_dssp HHHHHHHTCTTSCCSEEEECCCCCCCSCGGGSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTCE-EEEEEEEGGGTS--
T ss_pred hhhhhhhhccccchhhhhhcccccccccccchhHhhhhhhhhcchhHHHHHHHHHHHHHHHcCCC-ceEEEechhhcC--
Confidence 999888653 69999999998765443 3466788999999999999998876 345555 999999954321
Q ss_pred CCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecC
Q 011707 238 NIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGV 300 (479)
Q Consensus 238 ~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp 300 (479)
+......|+.||++.+.+.+.++.++ |+++++|.||.|--+
T Consensus 148 ----------------------~~~~~~~Y~asKaal~~l~~~la~El~~~gIrVn~V~PG~v~T~ 191 (285)
T d1jtva_ 148 ----------------------GLPFNDVYCASKFALEGLCESLAVLLLPFGVHLSLIECGPVHTA 191 (285)
T ss_dssp ----------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECCBCC-
T ss_pred ----------------------CCCCchHHHHHHHHHHHHHHHHHHHhhccCcEEEEEecCCCCCh
Confidence 22336789999999999999999884 899999999998544
|
| >d1snya_ c.2.1.2 (A:) Carbonyl reductase sniffer {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase sniffer species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.80 E-value=1.9e-18 Score=160.05 Aligned_cols=175 Identities=12% Similarity=0.064 Sum_probs=129.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHh---CCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 86 AKRVMIIGGDGYCGWATALHLSN---KGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~---~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
||+||||||+++||.+++++|++ +|++|++.+|..... .+ ++...+ ...++.++.+|++
T Consensus 2 MKtilITGas~GIG~a~a~~l~~~a~~g~~V~~~~r~~~~~-------------~~----~~~~~~-~~~~~~~~~~Dvs 63 (248)
T d1snya_ 2 MNSILITGCNRGLGLGLVKALLNLPQPPQHLFTTCRNREQA-------------KE----LEDLAK-NHSNIHILEIDLR 63 (248)
T ss_dssp CSEEEESCCSSHHHHHHHHHHHTSSSCCSEEEEEESCTTSC-------------HH----HHHHHH-HCTTEEEEECCTT
T ss_pred cCEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-------------HH----HHHHHh-cCCcEEEEEEEec
Confidence 78999999999999999999974 699999998865421 11 111111 1358999999999
Q ss_pred ChHHHHHHhhh-------cCCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHHHc--------------
Q 011707 163 DFEFLSESFKS-------FEPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-------------- 219 (479)
Q Consensus 163 d~~~~~~~~~~-------~~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-------------- 219 (479)
|+++++++++. .++|++|||||..... ....+.+++..++++|+.|+..+.+++...
T Consensus 64 ~~~~v~~~~~~i~~~~~~~~iDiLvnNAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~p~l~~~~~~~~~~~~~ 143 (248)
T d1snya_ 64 NFDAYDKLVADIEGVTKDQGLNVLFNNAGIAPKSARITAVRSQELLDTLQTNTVVPIMLAKACLPLLKKAAKANESQPMG 143 (248)
T ss_dssp CGGGHHHHHHHHHHHHGGGCCSEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHTTTSCSS
T ss_pred cHHHHHHHHhhhHHHhhcCCcceEEeeccccccCcccccCCHHHHHHHHHhccccHHHHHHHHHHHHHHhhhcccccccc
Confidence 99988877653 2699999999975543 223355678889999999999998876321
Q ss_pred -CCcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecC
Q 011707 220 -RQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQG 295 (479)
Q Consensus 220 -g~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~ 295 (479)
+.+ ++|++||.. |.... .+......|+.||++...+++.++.++ |++++.+.||
T Consensus 144 ~~~g-~ii~i~S~~--g~~~~-------------------~~~~~~~~Y~aSKaal~~lt~~la~e~~~~gI~vn~v~PG 201 (248)
T d1snya_ 144 VGRA-AIINMSSIL--GSIQG-------------------NTDGGMYAYRTSKSALNAATKSLSVDLYPQRIMCVSLHPG 201 (248)
T ss_dssp TTTC-EEEEECCGG--GCSTT-------------------CCSCCCHHHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCC
T ss_pred cccc-ccccccccc--cccCC-------------------CCCCChHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEcCCC
Confidence 233 899999843 21110 122335689999999999999998874 7999999999
Q ss_pred eeecC
Q 011707 296 VVYGV 300 (479)
Q Consensus 296 ~v~Gp 300 (479)
.|--+
T Consensus 202 ~v~T~ 206 (248)
T d1snya_ 202 WVKTD 206 (248)
T ss_dssp SBCST
T ss_pred cccCC
Confidence 88544
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=99.80 E-value=1.5e-18 Score=160.80 Aligned_cols=177 Identities=9% Similarity=0.004 Sum_probs=127.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
..|+||||||+++||.+++++|+++|+ .|++..|... +++++.+..+.++.++.+|++
T Consensus 2 ~~KtilITGassGIG~a~a~~la~~G~~~~Vi~~~R~~~--------------------~~~~l~~~~~~~~~~~~~Dvs 61 (250)
T d1yo6a1 2 SPGSVVVTGANRGIGLGLVQQLVKDKNIRHIIATARDVE--------------------KATELKSIKDSRVHVLPLTVT 61 (250)
T ss_dssp CCSEEEESSCSSHHHHHHHHHHHTCTTCCEEEEEESSGG--------------------GCHHHHTCCCTTEEEEECCTT
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHCCCCCEEEEEeCCHH--------------------HHHHHHHhhCCceEEEEEecC
Confidence 468999999999999999999999996 5777666432 122333344568999999999
Q ss_pred ChHHHHHHhhhc-------CCCEEEEcccccCc--ccccccccccchhhhhhHHHHHHHHHHHHH----cC---------
Q 011707 163 DFEFLSESFKSF-------EPDAVVHFGEQRSA--PYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FR--------- 220 (479)
Q Consensus 163 d~~~~~~~~~~~-------~~D~Vih~A~~~~~--~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g--------- 220 (479)
|.++++++++.. ++|++|||||.... .....+.+++.+++++|+.|+.++.+++.. .+
T Consensus 62 ~~~~v~~~~~~i~~~~~~~~idilinnAG~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~l~~~~~~~~~~~~~ 141 (250)
T d1yo6a1 62 CDKSLDTFVSKVGEIVGSDGLSLLINNAGVLLSYGTNTEPNRAVIAEQLDVNTTSVVLLTQKLLPLLKNAASKESGDQLS 141 (250)
T ss_dssp CHHHHHHHHHHHHHHHGGGCCCEEEECCCCCCCBCTTSCCCHHHHHHHHHHHTHHHHHHHHHTHHHHHHHHHSSCSSCCC
T ss_pred CHHHHHHHHHHHHHHhCCCCeEEEEEcCcccCCCCccccCCHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCcccc
Confidence 998887776532 49999999997543 223345567888999999999999887632 11
Q ss_pred -CcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCe
Q 011707 221 -QECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGV 296 (479)
Q Consensus 221 -~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~ 296 (479)
...+++.+|+...+-.... .. .+..+...|+.||++...+++.++.++ |++++.+.||.
T Consensus 142 ~~~~~~i~~s~~~~~~~~~~--~~---------------~~~~~~~aY~aSKaal~~l~~~la~el~~~gI~v~~i~PG~ 204 (250)
T d1yo6a1 142 VSRAAVITISSGLGSITDNT--SG---------------SAQFPVLAYRMSKAAINMFGRTLAVDLKDDNVLVVNFCPGW 204 (250)
T ss_dssp TTTCEEEEECCGGGCSTTCC--ST---------------TSSSCBHHHHHHHHHHHHHHHHHHHHTGGGTCEEEEEECCC
T ss_pred ceeccccccccccccccCCc--cc---------------ccchhHHHHHHHHHHHHHHHHHHHHHhcccCeEEEEEecCC
Confidence 1126777776433221110 00 122345679999999999999999874 79999999988
Q ss_pred ee
Q 011707 297 VY 298 (479)
Q Consensus 297 v~ 298 (479)
|-
T Consensus 205 v~ 206 (250)
T d1yo6a1 205 VQ 206 (250)
T ss_dssp C-
T ss_pred CC
Confidence 73
|
| >d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.77 E-value=4.2e-18 Score=156.31 Aligned_cols=197 Identities=11% Similarity=0.007 Sum_probs=139.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
++|+||||||+|+||.+++++|+++|++|+++|+..... ......+..|..+.
T Consensus 1 egK~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~~~~---------------------------~~~~~~~~~~~~~~ 53 (236)
T d1dhra_ 1 EARRVLVYGGRGALGSRCVQAFRARNWWVASIDVVENEE---------------------------ASASVIVKMTDSFT 53 (236)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSCCTT---------------------------SSEEEECCCCSCHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCcccc---------------------------ccccceeecccCcH
Confidence 489999999999999999999999999999998754321 01233344555544
Q ss_pred HHHHHH-------hhhcCCCEEEEcccccCcc-c-ccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeeccccc
Q 011707 165 EFLSES-------FKSFEPDAVVHFGEQRSAP-Y-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEY 234 (479)
Q Consensus 165 ~~~~~~-------~~~~~~D~Vih~A~~~~~~-~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~ 234 (479)
+..+.+ +...++|++|||||..... . .....+++++++++|+.++.++.+++... +.+.+||++||....
T Consensus 54 ~~~~~~~~~~~~~~~~~~iD~lInnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~G~Iv~isS~~~~ 133 (236)
T d1dhra_ 54 EQADQVTAEVGKLLGDQKVDAILCVAGGWAGGNAKSKSLFKNCDLMWKQSIWTSTISSHLATKHLKEGGLLTLAGAKAAL 133 (236)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGG
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECCcccccccchhcCCHHHHHHHHHHcchHHHHHHHHHHHhcccccceeEEccHHHc
Confidence 433332 2222589999999964322 2 22234567888999999999999888653 222489999996533
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-----CCceEEeecCeeecCCCCchhhhH
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-----GIRATDLNQGVVYGVRTDETAMHE 309 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gl~~~ivRp~~v~Gp~~~~~~~~~ 309 (479)
. +......|+.||++.+.+++.++.++ |++++.+.||.|.-|.
T Consensus 134 ~------------------------~~~~~~~Y~asKaal~~lt~~la~El~~~~~gI~vn~v~PG~v~T~~-------- 181 (236)
T d1dhra_ 134 D------------------------GTPGMIGYGMAKGAVHQLCQSLAGKNSGMPSGAAAIAVLPVTLDTPM-------- 181 (236)
T ss_dssp S------------------------CCTTBHHHHHHHHHHHHHHHHHTSTTSSCCTTCEEEEEEESCEECHH--------
T ss_pred C------------------------CccCCcccHHHHHHHHHHHHHHHHHhccCCCcEEEEEEEeccCcCCc--------
Confidence 2 22336899999999999999998764 6999999999986541
Q ss_pred hhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC
Q 011707 310 ELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA 368 (479)
Q Consensus 310 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~ 368 (479)
....... ...-.|+..+++++.+..++....
T Consensus 182 -------------------~~~~~~~---------~~~~~~~~pe~va~~~~~l~s~~~ 212 (236)
T d1dhra_ 182 -------------------NRKSMPE---------ADFSSWTPLEFLVETFHDWITGNK 212 (236)
T ss_dssp -------------------HHHHSTT---------SCGGGSEEHHHHHHHHHHHHTTTT
T ss_pred -------------------chhhCcc---------chhhcCCCHHHHHHHHHHHhCCCc
Confidence 1111111 112357889999999999987644
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=3.3e-18 Score=160.25 Aligned_cols=174 Identities=14% Similarity=0.105 Sum_probs=132.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
++||++|||||+++||.+++++|+++|++|++++|.... +.+..+......+..+..+.+|+.+
T Consensus 12 L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~~~----------------l~~~~~~~~~~~~~~~~~~~~d~~~ 75 (269)
T d1xu9a_ 12 LQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSKET----------------LQKVVSHCLELGAASAHYIAGTMED 75 (269)
T ss_dssp GTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHH----------------HHHHHHHHHHHTCSEEEEEECCTTC
T ss_pred cCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHH----------------HHHHHHHHhhhhcccchhhhhhhhh
Confidence 689999999999999999999999999999999986542 2222333333445678889999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHH---cCCcceEEEeeccccc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKE---FRQECHLVKLGTMGEY 234 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~---~g~~~~~V~~SS~~v~ 234 (479)
.+.....++.. .+|+++||||...... ...+.+++..++++|+.|+..+.+++.. .+.+ ++|++||...+
T Consensus 76 ~~~~~~~~~~~~~~~g~~~~li~nag~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~lp~m~~~~G-~ii~isS~~~~ 154 (269)
T d1xu9a_ 76 MTFAEQFVAQAGKLMGGLDMLILNHITNTSLNLFHDDIHHVRKSMEVNFLSYVVLTVAALPMLKQSNG-SIVVVSSLAGK 154 (269)
T ss_dssp HHHHHHHHHHHHHHHTSCSEEEECCCCCCCCCCCCSCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTC-EEEEEEEGGGT
T ss_pred HHHHHHHHHHHHHHhCCccccccccccccccccccCCHHHhhhheeeehhhHHHHHHHHHHHHHhcCC-cceEeccchhc
Confidence 87776655432 6899999999765433 2336667788999999999988877743 2233 89999985432
Q ss_pred cCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-----CCceEEeecCeee
Q 011707 235 GTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-----GIRATDLNQGVVY 298 (479)
Q Consensus 235 g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gl~~~ivRp~~v~ 298 (479)
- +......|+.||++.+.+.+.++.++ +++++.+.||.|-
T Consensus 155 ~------------------------~~p~~~~Y~asKaal~~~~~~La~El~~~~~~I~V~~v~PG~v~ 199 (269)
T d1xu9a_ 155 V------------------------AYPMVAAYSASKFALDGFFSSIRKEYSVSRVNVSITLCVLGLID 199 (269)
T ss_dssp S------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEEEECCBC
T ss_pred C------------------------CCCCchHHHHHHHHHHHHHHHHHHHhhhcCCCEEEEEEecCcCC
Confidence 1 22347899999999999999998773 5888999998874
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=4.3e-18 Score=160.06 Aligned_cols=194 Identities=15% Similarity=0.107 Sum_probs=131.1
Q ss_pred CcEE-EEEcCCchhhHHHHHHHHhC-CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 86 AKRV-MIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 86 ~~~v-LVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
||+| |||||+++||..++++|+++ |++|++.+|.... +.+..+.+.. .+.++.++.+|++|
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~----------------~~~~~~~l~~-~~~~~~~~~~Dvs~ 64 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR----------------GQAAVQQLQA-EGLSPRFHQLDIDD 64 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH----------------HHHHHHHHHH-TTCCCEEEECCTTC
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH----------------HHHHHHHHHh-cCCcEEEEEEecCC
Confidence 4555 99999999999999999986 8999999986542 1222233322 24578999999999
Q ss_pred hHHHHHHhhhc-----CCCEEEEcccccCccc-ccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeecccc-cc
Q 011707 164 FEFLSESFKSF-----EPDAVVHFGEQRSAPY-SMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGE-YG 235 (479)
Q Consensus 164 ~~~~~~~~~~~-----~~D~Vih~A~~~~~~~-~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v-~g 235 (479)
.++++++++.. ++|++|||||+..... ...+.+++..++++|+.|+..+.+++... ....++|++||... .+
T Consensus 65 ~~sv~~~~~~~~~~~g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnisS~~~~~~ 144 (275)
T d1wmaa1 65 LQSIRALRDFLRKEYGGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVSSIMSVRA 144 (275)
T ss_dssp HHHHHHHHHHHHHHHSSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEECCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccceecc
Confidence 99888776543 6999999999865432 22344567788999999999999988653 11238999999432 11
Q ss_pred CCCC-----------CCcCCc--------eeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-------CCce
Q 011707 236 TPNI-----------DIEEGY--------ITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-------GIRA 289 (479)
Q Consensus 236 ~~~~-----------~~~e~~--------~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-------gl~~ 289 (479)
.+.. ...+.. ...... .....+..+...|+.||++...+.+.+++++ |+++
T Consensus 145 ~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~aY~~sK~a~~~~t~~la~~l~~~~~~~~I~v 221 (275)
T d1wmaa1 145 LKSCSPELQQKFRSETITEEELVGLMNKFVEDTKK---GVHQKEGWPSSAYGVTKIGVTVLSRIHARKLSEQRKGDKILL 221 (275)
T ss_dssp HHTSCHHHHHHHHCSSCCHHHHHHHHHHHHHHHHT---TCTTTTTCCSCHHHHHHHHHHHHHHHHHHHHHHHCTTSCCEE
T ss_pred ccccchhhhhhhcccccchhhhccccccchhcccc---cccccCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 1100 000000 000000 0001123446789999999999888777653 8999
Q ss_pred EEeecCeeec
Q 011707 290 TDLNQGVVYG 299 (479)
Q Consensus 290 ~ivRp~~v~G 299 (479)
+.+.||.|--
T Consensus 222 n~v~PG~v~T 231 (275)
T d1wmaa1 222 NACCPGWVRT 231 (275)
T ss_dssp EEEECCSBCS
T ss_pred EEEecccccC
Confidence 9999998853
|
| >d1e7wa_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Leishmania major [TaxId: 5664]
Probab=99.74 E-value=1e-16 Score=151.22 Aligned_cols=226 Identities=12% Similarity=0.022 Sum_probs=146.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCc------------
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKN------------ 153 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 153 (479)
...+|||||+++||.+++++|+++|++|++.++...... .+..+.+....+..
T Consensus 2 ~pVAlITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~~d~~~~~ 66 (284)
T d1e7wa_ 2 VPVALVTGAAKRLGRSIAEGLHAEGYAVCLHYHRSAAEA---------------NALSATLNARRPNSAITVQADLSNVA 66 (284)
T ss_dssp CCEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHHH---------------HHHHHHHHHHSTTCEEEEECCCSSSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCCHHHH---------------HHHHHHHHhhcCCceEEEEeeccccc
Confidence 357899999999999999999999999999887543211 11111222112222
Q ss_pred -----eeEEEcccCChHHHHHHhhhc-----CCCEEEEcccccCcccccc-ccccc--------------chhhhhhHHH
Q 011707 154 -----IELYIGDICDFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMI-DRSRA--------------VFTQHNNVIG 208 (479)
Q Consensus 154 -----v~~v~~Dl~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~-~~~~~--------------~~~~~~Nv~g 208 (479)
+..+.+|+++.++++++++.. ++|++|||||......... +.+++ ..++.+|+.+
T Consensus 67 ~~~~~~~~~~~dv~~~~~v~~~~~~~~~~~G~iDiLVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~ 146 (284)
T d1e7wa_ 67 TAPVSGADGSAPVTLFTRCAELVAACYTHWGRCDVLVNNASSFYPTPLLRNDEDGHEPCVGDREAMETATADLFGSNAIA 146 (284)
T ss_dssp BCCCC----CCCBCHHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCCCC-------------HHHHHHHHHHHHHHTHH
T ss_pred ccccccccccccCCCHHHHHHHHHHHHHHhCCCCEEEecCCccCCCchhhCCHHHhhhhhhhHHHHHHHHHHHHhhheee
Confidence 334456688888888776542 7999999999865432221 11111 2357889999
Q ss_pred HHHHHHHHHHc---------CCcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHH
Q 011707 209 TLNVLFAMKEF---------RQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIA 279 (479)
Q Consensus 209 ~~~ll~~a~~~---------g~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~ 279 (479)
+..+.+++.+. +...++|+++|.... .+......|+.+|++.+.+++
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~s~~~~------------------------~~~~~~~~Y~asKaal~~lt~ 202 (284)
T d1e7wa_ 147 PYFLIKAFAHRVAGTPAKHRGTNYSIINMVDAMTN------------------------QPLLGYTIYTMAKGALEGLTR 202 (284)
T ss_dssp HHHHHHHHHHHHHTSCGGGSCSCEEEEEECCTTTT------------------------SCCTTCHHHHHHHHHHHHHHH
T ss_pred eeeeeccccchhhhhHHHhcCCCCccccccccccc------------------------CCccceeeeccccccchhhhH
Confidence 99988876432 222367777775322 122346899999999999999
Q ss_pred HHHHHh---CCceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHH
Q 011707 280 FTCKAW---GIRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDT 356 (479)
Q Consensus 280 ~~~~~~---gl~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dv 356 (479)
.++.++ |++++.|.||.+--.... ...+........++ ..-+...+|+
T Consensus 203 ~lA~el~~~gIrvN~I~PG~t~~~~~~---------------------~~~~~~~~~~~~pl--------~~R~~~peei 253 (284)
T d1e7wa_ 203 SAALELAPLQIRVNGVGPGLSVLVDDM---------------------PPAVWEGHRSKVPL--------YQRDSSAAEV 253 (284)
T ss_dssp HHHHHHGGGTEEEEEEEESSBCCGGGS---------------------CHHHHHHHHTTCTT--------TTSCBCHHHH
T ss_pred HHHHHhCCccccccccccccccccccC---------------------CHHHHHHHHhcCCC--------CCCCCCHHHH
Confidence 999885 899999999864222111 12334444433221 1235689999
Q ss_pred HHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 357 VQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 357 a~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
+++++.++..... .|+ ++.+.|+
T Consensus 254 A~~v~fL~S~~s~~itG~--~i~VDGG 278 (284)
T d1e7wa_ 254 SDVVIFLCSSKAKYITGT--CVKVDGG 278 (284)
T ss_dssp HHHHHHHHSGGGTTCCSC--EEEESTT
T ss_pred HHHHHHHhCchhcCccCC--eEEECcC
Confidence 9999999875443 455 8888875
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=3.7e-17 Score=152.12 Aligned_cols=229 Identities=14% Similarity=0.163 Sum_probs=156.0
Q ss_pred CCCCcEEEEEcCCc--hhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDG--YCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG--~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.+++|+||||||+| +||.++++.|+++|++|++.++.... .+..++.... ......+..|
T Consensus 2 ~L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~~~-----------------~~~~~~~~~~-~~~~~~~~~~ 63 (258)
T d1qsga_ 2 FLSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKL-----------------KGRVEEFAAQ-LGSDIVLQCD 63 (258)
T ss_dssp TTTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSTTT-----------------HHHHHHHHHH-TTCCCEEECC
T ss_pred cCCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCHHH-----------------HHHHHHHHhh-cCCcceeecc
Confidence 36799999999999 79999999999999999999875331 1111121111 2467788899
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCcccc------cccccccchhhhhhHHHHHHHHHHHHHcC-CcceEEEe
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAPYS------MIDRSRAVFTQHNNVIGTLNVLFAMKEFR-QECHLVKL 228 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~------~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g-~~~~~V~~ 228 (479)
+.+..+..+.+... .+|++||+|+....... ....+.+...+.+|+.+...+++++...- .+..+|++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~d~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii~i 143 (258)
T d1qsga_ 64 VAEDASIDTMFAELGKVWPKFDGFVHSIGFAPGDQLDGDYVNAVTREGFKIAHDISSYSFVAMAKACRSMLNPGSALLTL 143 (258)
T ss_dssp TTCHHHHHHHHHHHHTTCSSEEEEEECCCCCCGGGGSSCHHHHCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred cchHHHHHHHHHHhhhcccccceEEEeecccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCCcEEEEe
Confidence 99987777666532 58999999987543221 11222345567788888888888776532 22378888
Q ss_pred eccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCch
Q 011707 229 GTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 229 SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~ 305 (479)
||.+... +......|+.+|++.+.+++.++.++ |+++++++||.|..+.....
T Consensus 144 ss~~~~~------------------------~~~~~~~Y~~sKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~ 199 (258)
T d1qsga_ 144 SYLGAER------------------------AIPNYNVMGLAKASLEANVRYMANAMGPEGVRVNAISAGPIRTLAASGI 199 (258)
T ss_dssp ECGGGTS------------------------BCTTTTHHHHHHHHHHHHHHHHHHHHTTTTEEEEEEEECCCCCTTGGGS
T ss_pred cchhhcc------------------------CCCCcHHHHHHHHHHHHHHHHHHHHhCccCceeeccccccccccccccc
Confidence 8854221 22236789999999999999999986 69999999999976643211
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
..............| ..-+...+|++.++..++..... .|+ ++.+.++
T Consensus 200 -----------------~~~~~~~~~~~~~~p---------l~R~~~peeia~~v~fL~s~~s~~itG~--~i~vDGG 249 (258)
T d1qsga_ 200 -----------------KDFRKMLAHCEAVTP---------IRRTVTIEDVGNSAAFLCSDLSAGISGE--VVHVDGG 249 (258)
T ss_dssp -----------------TTHHHHHHHHHHHST---------TSSCCCHHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred -----------------chhhhHHHHHHhCCC---------CCCCcCHHHHHHHHHHHhCchhcCccCc--eEEECcC
Confidence 011222333322222 12367799999999999865433 455 8888775
|
| >d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.73 E-value=2.2e-17 Score=151.45 Aligned_cols=204 Identities=13% Similarity=0.052 Sum_probs=139.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
..+||||||+|+||.+++++|+++|++|+++|+...... .....+.+|+.+.+
T Consensus 2 ~gkVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~ 54 (235)
T d1ooea_ 2 SGKVIVYGGKGALGSAILEFFKKNGYTVLNIDLSANDQA---------------------------DSNILVDGNKNWTE 54 (235)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCCTTS---------------------------SEEEECCTTSCHHH
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCchhcc---------------------------cccceeccccCchh
Confidence 357999999999999999999999999999998653210 12333445655543
Q ss_pred HHH-------HHhhhcCCCEEEEcccccCcc--cccccccccchhhhhhHHHHHHHHHHHHHc-CCcceEEEeecccccc
Q 011707 166 FLS-------ESFKSFEPDAVVHFGEQRSAP--YSMIDRSRAVFTQHNNVIGTLNVLFAMKEF-RQECHLVKLGTMGEYG 235 (479)
Q Consensus 166 ~~~-------~~~~~~~~D~Vih~A~~~~~~--~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~-g~~~~~V~~SS~~v~g 235 (479)
... ..++..++|+||||||..... ......++++.++++|+.++.++.+++... ..+.+||++||...+.
T Consensus 55 ~~~~~~~~~~~~~~~g~iD~linnAG~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~Iv~isS~~~~~ 134 (235)
T d1ooea_ 55 QEQSILEQTASSLQGSQVDGVFCVAGGWAGGSASSKDFVKNADLMIKQSVWSSAIAAKLATTHLKPGGLLQLTGAAAAMG 134 (235)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECCCCCCCBCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCGGGGS
T ss_pred HHHHHHHHHHHHhcCCCeeEEEECCcccccccccccCcHHHHhhHhhhHHHHHHHHhhhcccccccceEEEEeccHHhcC
Confidence 322 222223689999999964332 222234567788999999999999888653 1224899999965332
Q ss_pred CCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh-----CCceEEeecCeeecCCCCchhhhHh
Q 011707 236 TPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW-----GIRATDLNQGVVYGVRTDETAMHEE 310 (479)
Q Consensus 236 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~-----gl~~~ivRp~~v~Gp~~~~~~~~~~ 310 (479)
+......|+.||++.+.+++.++.++ +++++.+.||.+--+
T Consensus 135 ------------------------~~~~~~~Y~asKaal~~l~~~la~e~~~~~~~i~v~~i~Pg~~~T~---------- 180 (235)
T d1ooea_ 135 ------------------------PTPSMIGYGMAKAAVHHLTSSLAAKDSGLPDNSAVLTIMPVTLDTP---------- 180 (235)
T ss_dssp ------------------------CCTTBHHHHHHHHHHHHHHHHHHSTTSSCCTTCEEEEEEESCBCCH----------
T ss_pred ------------------------CcccccchHHHHHHHHHHHHHHHHHhccCCCceEEEEEecCcCcCc----------
Confidence 22336899999999999999998774 578888999887432
Q ss_pred hhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCC---CCCCceEEEe
Q 011707 311 LCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPA---QPGEFRVFNQ 378 (479)
Q Consensus 311 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~---~~g~~~~~ni 378 (479)
+.+..... .....|+..+|+++.++..+..+. ..|. .+.+
T Consensus 181 -----------------~~~~~~~~---------~~~~~~~~~~~va~~~~~~l~~~~~~~~tG~--~i~v 223 (235)
T d1ooea_ 181 -----------------MNRKWMPN---------ADHSSWTPLSFISEHLLKWTTETSSRPSSGA--LLKI 223 (235)
T ss_dssp -----------------HHHHHSTT---------CCGGGCBCHHHHHHHHHHHHHCGGGCCCTTC--EEEE
T ss_pred -----------------chhhhCcC---------CccccCCCHHHHHHHHHHHhcCccccCCCce--EEEE
Confidence 22222211 123467889999999987665432 2344 6666
|
| >d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.72 E-value=1.3e-16 Score=146.80 Aligned_cols=213 Identities=19% Similarity=0.148 Sum_probs=149.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.|++|||||+++||++++++|+++|++|++++|.... .+...+++|+++..
T Consensus 1 DK~alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~~-----------------------------~~~~~~~~d~~~~~ 51 (241)
T d1uaya_ 1 ERSALVTGGASGLGRAAALALKARGYRVVVLDLRREG-----------------------------EDLIYVEGDVTREE 51 (241)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHTCEEEEEESSCCS-----------------------------SSSEEEECCTTCHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCccc-----------------------------ccceEeeccccchh
Confidence 3799999999999999999999999999999985431 35667889999886
Q ss_pred HHHHHhhh----cCCCEEEEcccccCc-----ccccccccccchhhhhhHHHHHHHHHHHHHc----------CCcceEE
Q 011707 166 FLSESFKS----FEPDAVVHFGEQRSA-----PYSMIDRSRAVFTQHNNVIGTLNVLFAMKEF----------RQECHLV 226 (479)
Q Consensus 166 ~~~~~~~~----~~~D~Vih~A~~~~~-----~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~----------g~~~~~V 226 (479)
....+... ...+.++++++.... .......+.+..++++|+.+..+++..+... +.+ +||
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~G-~Ii 130 (241)
T d1uaya_ 52 DVRRAVARAQEEAPLFAVVSAAGVGLAEKILGKEGPHGLESFRRVLEVNLLGTFNVLRLAAWAMRENPPDAEGQRG-VIV 130 (241)
T ss_dssp HHHHHHHHHHHHSCEEEEEECCCCCCCCCSBCSSSBCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCCCTTSCSE-EEE
T ss_pred hhHHHHHhhhccccccchhhhhhccccccccccccchhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhhhcccCce-eee
Confidence 66555442 245666777664322 1122233456778899999999888776432 233 899
Q ss_pred EeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCC
Q 011707 227 KLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTD 303 (479)
Q Consensus 227 ~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~ 303 (479)
++||...+. +......|+.+|++.+.+++.++.++ |++++.|.||.|--+...
T Consensus 131 ~isS~~~~~------------------------~~~~~~~Y~asKaal~~lt~~lA~ela~~gIrVN~V~PG~i~T~~~~ 186 (241)
T d1uaya_ 131 NTASVAAFE------------------------GQIGQAAYAASKGGVVALTLPAARELAGWGIRVVTVAPGLFDTPLLQ 186 (241)
T ss_dssp EECCTHHHH------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEECSCSSHHHH
T ss_pred eecchhhcc------------------------CCCCchhhHHHHHHHHHHHHHHHHHHhhcCCceeeecCCcccccccc
Confidence 999954331 22236899999999999999999984 799999999998544211
Q ss_pred chhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCC
Q 011707 304 ETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTE 381 (479)
Q Consensus 304 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~ 381 (479)
..............++ ..-+...+|+|.+++.++...-..|+ ++++.|+
T Consensus 187 -------------------~~~~~~~~~~~~~~~~--------~~R~g~pedvA~~v~fL~s~~~iTG~--~i~VDGG 235 (241)
T d1uaya_ 187 -------------------GLPEKAKASLAAQVPF--------PPRLGRPEEYAALVLHILENPMLNGE--VVRLDGA 235 (241)
T ss_dssp -------------------TSCHHHHHHHHTTCCS--------SCSCCCHHHHHHHHHHHHHCTTCCSC--EEEESTT
T ss_pred -------------------hhhhhHHHHHHhcCCC--------CCCCcCHHHHHHHHHHHHhCCCCCCC--EEEECCc
Confidence 0112222333333221 11356789999999999986544566 9988765
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=99.71 E-value=3e-16 Score=146.74 Aligned_cols=242 Identities=11% Similarity=-0.000 Sum_probs=151.1
Q ss_pred CCCCcEEEEEcCC--chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGD--GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGat--G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.++||++|||||+ .+||.+++++|+++|++|++.++.... ..+...+..+.+...+++|
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~~~-------------------~~~~~~~~~~~~~~~~~~d 63 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDRLR-------------------LIQRITDRLPAKAPLLELD 63 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSCHH-------------------HHHHHHTTSSSCCCEEECC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCChHH-------------------HHHHHHHHcCCceeeEeee
Confidence 4689999999965 469999999999999999998865321 1222333345678899999
Q ss_pred cCChHHHHHHhhhc--------CCCEEEEcccccCccc------ccccccccchhhhhhHHHHHHHHHHHHHcCCcceEE
Q 011707 161 ICDFEFLSESFKSF--------EPDAVVHFGEQRSAPY------SMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLV 226 (479)
Q Consensus 161 l~d~~~~~~~~~~~--------~~D~Vih~A~~~~~~~------~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V 226 (479)
+++.++++++++.. .+|+++||||...... ......++.+.+.+|+.........+........++
T Consensus 64 v~~~~~~~~~~~~v~~~~~~~~~ld~~i~~ag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 143 (268)
T d2h7ma1 64 VQNEEHLASLAGRVTEAIGAGNKLDGVVHSIGFMPQTGMGINPFFDAPYADVSKGIHISAYSYASMAKALLPIMNPGGSI 143 (268)
T ss_dssp TTCHHHHHHHHHHHHHHHCTTCCEEEEEECCCCCCGGGSTTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEE
T ss_pred cccccccccccchhhhccccCCCcceeeecccccCccccccccccccchhhhhhhhhhhhhHHHHHHHHHhhhccccccc
Confidence 99987766665432 4799999999653211 112233455567777777777777766544332444
Q ss_pred EeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCC
Q 011707 227 KLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTD 303 (479)
Q Consensus 227 ~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~ 303 (479)
.++|..... .......|+.+|++.+.+++.++.++ |++++.|.||.|-.+...
T Consensus 144 ~~~s~~~~~------------------------~~p~~~~y~~sK~a~~~ltr~lA~e~~~~gIrVN~V~PG~v~T~~~~ 199 (268)
T d2h7ma1 144 VGMDFDPSR------------------------AMPAYNWMTVAKSALESVNRFVAREAGKYGVRSNLVAAGPIRTLAMS 199 (268)
T ss_dssp EEEECCCSS------------------------CCTTTHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCHHHH
T ss_pred ccccccccc------------------------cCcccchhhccccchhhccccchhhhhccCCcceEEecCCCCChhhh
Confidence 444433221 11236789999999999999999885 799999999987543110
Q ss_pred chhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCCCCCceEEEeCCCC
Q 011707 304 ETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQPGEFRVFNQFTEQ 382 (479)
Q Consensus 304 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~~g~~~~~ni~~~~ 382 (479)
. +... ............+........|+ .+.+...+|+++++..++......-.++++.+.++.
T Consensus 200 ~------~~~~-~~~~~~~~~~~~~~~~~~~~~pl--------~rr~~~p~dva~~v~fL~Sd~a~~iTG~~i~vDGG~ 263 (268)
T d2h7ma1 200 A------IVGG-ALGEEAGAQIQLLEEGWDQRAPI--------GWNMKDATPVAKTVCALLSDWLPATTGDIIYADGGA 263 (268)
T ss_dssp H------HHTT-TTCHHHHHHHHHHHHHHHHHCTT--------CCCTTCCHHHHHHHHHHHSSSCTTCCSEEEEESTTG
T ss_pred h------hccc-hhhhhhccchHHHHHHHHhcCCC--------CCCCCCHHHHHHHHHHHhCchhcCccCCEEEECcCc
Confidence 0 0000 00000001111222222222111 134677899999999999654433233488888754
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=99.67 E-value=1.5e-15 Score=142.34 Aligned_cols=230 Identities=14% Similarity=0.104 Sum_probs=145.6
Q ss_pred CCCCcEEEEEcCCc--hhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcc
Q 011707 83 PSKAKRVMIIGGDG--YCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGD 160 (479)
Q Consensus 83 ~~~~~~vLVtGatG--~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~D 160 (479)
.+++|++|||||+| +||.+++++|+++|++|++++|... +.+.++..... .....++..|
T Consensus 2 ~L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~~-----------------~~~~~~~l~~~-~~~~~~~~~d 63 (274)
T d2pd4a1 2 FLKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNES-----------------LEKRVRPIAQE-LNSPYVYELD 63 (274)
T ss_dssp TTTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESSTT-----------------THHHHHHHHHH-TTCCCEEECC
T ss_pred cCCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCHH-----------------HHHHHHHHHhh-CCceeEeeec
Confidence 36899999999887 8999999999999999999998532 11222222222 3467788999
Q ss_pred cCChHHHHHHhhhc-----CCCEEEEcccccCccccccc-ccccchhhhhh----HHHHHHHHHHHHHc-CCcceEEEee
Q 011707 161 ICDFEFLSESFKSF-----EPDAVVHFGEQRSAPYSMID-RSRAVFTQHNN----VIGTLNVLFAMKEF-RQECHLVKLG 229 (479)
Q Consensus 161 l~d~~~~~~~~~~~-----~~D~Vih~A~~~~~~~~~~~-~~~~~~~~~~N----v~g~~~ll~~a~~~-g~~~~~V~~S 229 (479)
+++.+++.+++... .+|++|||+|.........+ ..+....+..+ ..+...+.....+. +....++.+|
T Consensus 64 ~~~~~~~~~~~~~~~~~~g~id~lV~nag~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 143 (274)
T d2pd4a1 64 VSKEEHFKSLYNSVKKDLGSLDFIVHSVAFAPKEALEGSLLETSKSAFNTAMEISVYSLIELTNTLKPLLNNGASVLTLS 143 (274)
T ss_dssp TTCHHHHHHHHHHHHHHTSCEEEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred ccchhhHHHHHHHHHHHcCCCCeEEeecccccccccccccccccchhhhhhhccccccccccccccccccccCcceeeec
Confidence 99998877776533 69999999997643322211 11112222222 22333344433332 2232455555
Q ss_pred ccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCchh
Q 011707 230 TMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDETA 306 (479)
Q Consensus 230 S~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~~ 306 (479)
+.+..+ +......|+.+|.+.+.+++.++.++ |++++++.||.+.-+......
T Consensus 144 ~~~~~~------------------------~~~~~~~y~asK~al~~ltr~lA~e~~~~GIrvN~I~PG~v~T~~~~~~~ 199 (274)
T d2pd4a1 144 YLGSTK------------------------YMAHYNVMGLAKAALESAVRYLAVDLGKHHIRVNALSAGPIRTLASSGIA 199 (274)
T ss_dssp CGGGTS------------------------BCTTCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECCCCCTTGGGST
T ss_pred cccccc------------------------ccccchhhhHHHHHHHHHHHhhHHHhcCcCceecccccCcccCccccccC
Confidence 554332 22336789999999999999999875 799999999988765422100
Q ss_pred hhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCCC
Q 011707 307 MHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTEQ 382 (479)
Q Consensus 307 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~~ 382 (479)
. -........... ...-+...+|+|.+++.++..... .|+ ++.+.++.
T Consensus 200 ---------------~--~~~~~~~~~~~~---------p~~r~~~pedIA~~v~fL~S~~s~~itG~--~i~vDGG~ 249 (274)
T d2pd4a1 200 ---------------D--FRMILKWNEINA---------PLRKNVSLEEVGNAGMYLLSSLSSGVSGE--VHFVDAGY 249 (274)
T ss_dssp ---------------T--HHHHHHHHHHHS---------TTSSCCCHHHHHHHHHHHHSGGGTTCCSC--EEEESTTG
T ss_pred ---------------c--hHHHHHHHhhhh---------hccCCcCHHHHHHHHHHHhChhhCCCcCc--eEEECCCh
Confidence 0 011222221211 123567899999999999976443 454 88887653
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.66 E-value=3.4e-15 Score=139.17 Aligned_cols=225 Identities=13% Similarity=0.109 Sum_probs=144.9
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh--
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF-- 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~-- 164 (479)
.++|||||+++||.+++++|+++|++|++++|..... ..+..+++....+.....+..|+.+.
T Consensus 2 ~vAlVTGas~GIG~aia~~la~~G~~Vvi~~r~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (266)
T d1mxha_ 2 PAAVITGGARRIGHSIAVRLHQQGFRVVVHYRHSEGA---------------AQRLVAELNAARAGSAVLCKGDLSLSSS 66 (266)
T ss_dssp CEEEETTCSSHHHHHHHHHHHHTTCEEEEEESSCHHH---------------HHHHHHHHHHHSTTCEEEEECCCSSSTT
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCchHH---------------HHHHHHHHHhhcCCceEEEecccccchh
Confidence 3789999999999999999999999999999865421 11223344444456777777777543
Q ss_pred --HHHHHHhh----hc-CCCEEEEcccccCcccccc------------cccccchhhhhhHHHHHHHHHHHHHc------
Q 011707 165 --EFLSESFK----SF-EPDAVVHFGEQRSAPYSMI------------DRSRAVFTQHNNVIGTLNVLFAMKEF------ 219 (479)
Q Consensus 165 --~~~~~~~~----~~-~~D~Vih~A~~~~~~~~~~------------~~~~~~~~~~~Nv~g~~~ll~~a~~~------ 219 (479)
+.+.++++ .+ ++|++|||||......... ....+...+..|+.+...........
T Consensus 67 ~~~~~~~~~~~~~~~~g~iDilvnnAG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (266)
T d1mxha_ 67 LLDCCEDIIDCSFRAFGRCDVLVNNASAYYPTPLLPGDDTNGAADAKPIDAQVAELFGSNAVAPLFLIRAFARRQGEGGA 146 (266)
T ss_dssp HHHHHHHHHHHHHHHHSCCCEEEECCCCCCCCCSCC-----------CHHHHHHHHHHHHTHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEECCccCCCCcccccccccchhcccccccccccccccccccccchhhhhccccccccc
Confidence 33433332 22 6999999999764322110 00112234455666655555544332
Q ss_pred --CCcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeec
Q 011707 220 --RQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQ 294 (479)
Q Consensus 220 --g~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp 294 (479)
.....++.+|+..... +......|+.||++.+.+++.++.++ |++++.|.|
T Consensus 147 ~~~~~~~~~~~~~~~~~~------------------------~~~~~~~Y~asKaal~~lt~~lA~e~~~~gIrVN~I~P 202 (266)
T d1mxha_ 147 WRSRNLSVVNLCDAMTDL------------------------PLPGFCVYTMAKHALGGLTRAAALELAPRHIRVNAVAP 202 (266)
T ss_dssp --CCCEEEEEECCGGGGS------------------------CCTTCHHHHHHHHHHHHHHHHHHHHHGGGTEEEEEEEE
T ss_pred cccccccchhhhhccccc------------------------cCcchhhhhhhHHHHhhhHHHHHHHhCccCcEEEEecc
Confidence 1122566666643321 22347899999999999999999884 799999999
Q ss_pred CeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCC
Q 011707 295 GVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGE 372 (479)
Q Consensus 295 ~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~ 372 (479)
|.+.-+...+ ..+...+....++ + +-+...+|+|.+++.++..... .|+
T Consensus 203 G~i~t~~~~~---------------------~~~~~~~~~~~pl---~-----r~~~~peeva~~v~fL~s~~s~~itG~ 253 (266)
T d1mxha_ 203 GLSLLPPAMP---------------------QETQEEYRRKVPL---G-----QSEASAAQIADAIAFLVSKDAGYITGT 253 (266)
T ss_dssp SSBSCCSSSC---------------------HHHHHHHHTTCTT---T-----SCCBCHHHHHHHHHHHHSGGGTTCCSC
T ss_pred CcEeccccCC---------------------HHHHHHHHhcCCC---C-----CCCCCHHHHHHHHHHHhCchhCCccCC
Confidence 9987654332 1233334333221 0 2346799999999999976543 455
Q ss_pred ceEEEeCCC
Q 011707 373 FRVFNQFTE 381 (479)
Q Consensus 373 ~~~~ni~~~ 381 (479)
++++.|+
T Consensus 254 --~i~vDGG 260 (266)
T d1mxha_ 254 --TLKVDGG 260 (266)
T ss_dssp --EEEESTT
T ss_pred --eEEECcc
Confidence 8888775
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=99.65 E-value=2.3e-15 Score=142.72 Aligned_cols=244 Identities=13% Similarity=0.035 Sum_probs=146.6
Q ss_pred CCCCCcEEEEEcCCc--hhhHHHHHHHHhCCCeEEEEeccccccccccc-CCCCCCccchhhhhhhhhccc-CCCceeEE
Q 011707 82 DPSKAKRVMIIGGDG--YCGWATALHLSNKGYEVAIVDSLIRRLFDHQL-GLDSLTPIASIHDRLRCWKSL-TGKNIELY 157 (479)
Q Consensus 82 ~~~~~~~vLVtGatG--~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~v~~v 157 (479)
..++||++|||||+| +||..++++|+++|++|++.++.......... ..... ...+....... ...++..+
T Consensus 4 ~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 78 (297)
T d1d7oa_ 4 IDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWVPALNIFETSLRRGKF-----DQSRVLPDGSLMEIKKVYPL 78 (297)
T ss_dssp CCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEHHHHHHHHHHHHTTTT-----TGGGBCTTSSBCCEEEEEEE
T ss_pred cCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCchhhhhhHHHHHHhhh-----hhhhhhhhhhhhhhhhhhhh
Confidence 357899999999987 99999999999999999998875421100000 00000 00000000000 00011112
Q ss_pred Eccc------------------CChHHHH----HHhhhc-CCCEEEEcccccCc---ccccccccccchhhhhhHHHHHH
Q 011707 158 IGDI------------------CDFEFLS----ESFKSF-EPDAVVHFGEQRSA---PYSMIDRSRAVFTQHNNVIGTLN 211 (479)
Q Consensus 158 ~~Dl------------------~d~~~~~----~~~~~~-~~D~Vih~A~~~~~---~~~~~~~~~~~~~~~~Nv~g~~~ 211 (479)
..++ .+...++ ++.+.+ ++|++|||||.... +....+.++|.+.+++|+.++.+
T Consensus 79 ~~~~~~~~~~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~G~iDilVnnAg~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~ 158 (297)
T d1d7oa_ 79 DAVFDNPEDVPEDVKANKRYAGSSNWTVQEAAECVRQDFGSIDILVHSLANGPEVSKPLLETSRKGYLAAISASSYSFVS 158 (297)
T ss_dssp CTTCCSGGGSCHHHHTSHHHHHCCCCSHHHHHHHHHHHHSCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHH
T ss_pred hhhccccccchhhhhhhhhhhhccHHHHHHHHHHHHHHhCCCcccccccccccccccchhhhhcccccccccchhhhhhh
Confidence 1111 2222222 232222 69999999997431 23334666788999999999999
Q ss_pred HHHHHHHcCC-cceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH----hC
Q 011707 212 VLFAMKEFRQ-ECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA----WG 286 (479)
Q Consensus 212 ll~~a~~~g~-~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~g 286 (479)
+++++..... +..++.+++.+.... .......|+.+|...+.+++.++.+ +|
T Consensus 159 ~~~~~~~~~~~~g~~~~~~~~~~~~~-----------------------~~~~~~~y~~aKaa~~~l~~~~a~e~~~~~g 215 (297)
T d1d7oa_ 159 LLSHFLPIMNPGGASISLTYIASERI-----------------------IPGYGGGMSSAKAALESDTRVLAFEAGRKQN 215 (297)
T ss_dssp HHHHHGGGEEEEEEEEEEECGGGTSC-----------------------CTTCTTTHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHhhcCCcceeeeehhhccc-----------------------ccccccceecccccccccccccchhccccce
Confidence 9998865431 124555555432221 1123568999999999888876654 48
Q ss_pred CceEEeecCeeecCCCCchhhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhC
Q 011707 287 IRATDLNQGVVYGVRTDETAMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIAN 366 (479)
Q Consensus 287 l~~~ivRp~~v~Gp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~ 366 (479)
++++.|.||.+..+..... .....+.....+..| +..+...+|++.+++.++..
T Consensus 216 IrvN~I~PG~i~T~~~~~~-----------------~~~~~~~~~~~~~~P---------lgR~~~peevA~~v~fL~S~ 269 (297)
T d1d7oa_ 216 IRVNTISAGPLGSRAAKAI-----------------GFIDTMIEYSYNNAP---------IQKTLTADEVGNAAAFLVSP 269 (297)
T ss_dssp CEEEEEEECCCBCCCSSCC-----------------SHHHHHHHHHHHHSS---------SCCCBCHHHHHHHHHHHTSG
T ss_pred EEecccccccccchhhhhc-----------------cCCHHHHHHHHhCCC---------CCCCCCHHHHHHHHHHHhCc
Confidence 9999999999977654321 112233334433323 12457899999999999865
Q ss_pred CCC--CCCceEEEeCCC
Q 011707 367 PAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 367 ~~~--~g~~~~~ni~~~ 381 (479)
... .|+ ++.+.++
T Consensus 270 ~a~~itGq--~i~vDGG 284 (297)
T d1d7oa_ 270 LASAITGA--TIYVDNG 284 (297)
T ss_dssp GGTTCCSC--EEEESTT
T ss_pred hhcCCcCc--eEEECcC
Confidence 443 455 8888765
|
| >d1uh5a_ c.2.1.2 (A:) Enoyl-ACP reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=99.61 E-value=1e-14 Score=140.22 Aligned_cols=183 Identities=9% Similarity=0.044 Sum_probs=117.5
Q ss_pred CcEEEEEc--CCchhhHHHHHHHHhCCCeEEEEeccccccccccc-CCCCCCccchhhhhhhhhcccCCCceeEE-----
Q 011707 86 AKRVMIIG--GDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQL-GLDSLTPIASIHDRLRCWKSLTGKNIELY----- 157 (479)
Q Consensus 86 ~~~vLVtG--atG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~v----- 157 (479)
+|.+|||| ++++||..+++.|+++|++|++.++.......... ...+.. .+......+ ........
T Consensus 2 ~kVAlITGaa~s~GIG~aiA~~la~~GA~V~i~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~~~~~ 75 (329)
T d1uh5a_ 2 EDICFIAGIGDTNGYGWGIAKELSKRNVKIIFGIWPPVYNIFMKNYKNGKFD-----NDMIIDKDK-KMNILDMLPFDAS 75 (329)
T ss_dssp CCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEECGGGHHHHHHHHHTTTTT-----GGGEETTTE-ECCEEEEEECCTT
T ss_pred CcEEEEeCCCCCChHHHHHHHHHHHcCCEEEEEeCchhhhhhhHHHHHHhhh-----hHHHHHHHh-hhhhhhcccccce
Confidence 68999999 55799999999999999999998765431110000 000000 000000000 00111122
Q ss_pred ---------------EcccCChHHHHHHhhhc-----CCCEEEEcccccCc---ccccccccccchhhhhhHHHHHHHHH
Q 011707 158 ---------------IGDICDFEFLSESFKSF-----EPDAVVHFGEQRSA---PYSMIDRSRAVFTQHNNVIGTLNVLF 214 (479)
Q Consensus 158 ---------------~~Dl~d~~~~~~~~~~~-----~~D~Vih~A~~~~~---~~~~~~~~~~~~~~~~Nv~g~~~ll~ 214 (479)
..|+++.++++++++.. ++|++|||||.... +....+.++|..++++|+.++..+++
T Consensus 76 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~G~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~vn~~~~~~~~k 155 (329)
T d1uh5a_ 76 FDTANDIDEETKNNKRYNMLQNYTIEDVANLIHQKYGKINMLVHSLANAKEVQKDLLNTSRKGYLDALSKSSYSLISLCK 155 (329)
T ss_dssp CSSGGGCCHHHHTSHHHHTCCCCSHHHHHHHHHHHHCCEEEEEECCCCCTTTTSCGGGCCHHHHHHHHHHHTHHHHHHHH
T ss_pred ehhhcccchhhhhhhhhhhhhHHHHHHHHHHHHHHhCCCCeeccccccccccCCChhhhhhhhhhhhcccchhHHHHHHH
Confidence 23566665555554422 69999999996542 22334556788999999999999999
Q ss_pred HHHHc-CCcceEEEeeccccccCCCCCCcCCceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHH----hCCce
Q 011707 215 AMKEF-RQECHLVKLGTMGEYGTPNIDIEEGYITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKA----WGIRA 289 (479)
Q Consensus 215 ~a~~~-g~~~~~V~~SS~~v~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~----~gl~~ 289 (479)
++... ....+||.+||.+..... | .....|+.+|++.+.+++.++.+ +||++
T Consensus 156 ~~~~~m~~~GsIv~iss~~~~~~~----------------------p-~y~~~y~asKaal~~ltr~lA~Ela~~~gIRV 212 (329)
T d1uh5a_ 156 YFVNIMKPQSSIISLTYHASQKVV----------------------P-GYGGGMSSAKAALESDTRVLAYHLGRNYNIRI 212 (329)
T ss_dssp HHGGGEEEEEEEEEEECGGGTSCC----------------------T-TCTTTHHHHHHHHHHHHHHHHHHHHHHHCCEE
T ss_pred HHHhhcccccccccceeehhcccc----------------------c-ccchhhhhhhccccccchhhHHHHhcccCcEE
Confidence 88764 222489999886533211 1 12457999999999999988865 48999
Q ss_pred EEeecCee
Q 011707 290 TDLNQGVV 297 (479)
Q Consensus 290 ~ivRp~~v 297 (479)
+.|.||.|
T Consensus 213 NaI~PG~i 220 (329)
T d1uh5a_ 213 NTISAGPL 220 (329)
T ss_dssp EEEEECCC
T ss_pred EEEecCcc
Confidence 99999976
|
| >d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha-hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=99.50 E-value=4.9e-13 Score=123.59 Aligned_cols=225 Identities=14% Similarity=0.052 Sum_probs=127.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
||.||||||+++||.+++++|+++|++|+++|++... ...|+.+.+
T Consensus 1 mkVvlITGas~GIG~aiA~~la~~Ga~V~~~~~~~~~----------------------------------~~~d~~~~~ 46 (257)
T d1fjha_ 1 MSIIVISGCATGIGAATRKVLEAAGHQIVGIDIRDAE----------------------------------VIADLSTAE 46 (257)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSSSS----------------------------------EECCTTSHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECChHH----------------------------------HHHHhcCHH
Confidence 6889999999999999999999999999999875321 135666655
Q ss_pred HHHHHhhh----c--CCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHH----cCCcceEEEeecccccc
Q 011707 166 FLSESFKS----F--EPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKE----FRQECHLVKLGTMGEYG 235 (479)
Q Consensus 166 ~~~~~~~~----~--~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~----~g~~~~~V~~SS~~v~g 235 (479)
........ . .+|+++||||....... +.....+|..+...+.+.... .... ....+++.....
T Consensus 47 ~~~~~~~~~~~~~~~~id~lv~~Ag~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 119 (257)
T d1fjha_ 47 GRKQAIADVLAKCSKGMDGLVLCAGLGPQTKV------LGNVVSVNYFGATELMDAFLPALKKGHQP-AAVVISSVASAH 119 (257)
T ss_dssp HHHHHHHHHHTTCTTCCSEEEECCCCCTTCSS------HHHHHHHHTHHHHHHHHHHHHHHHTSSSC-EEEEECCGGGGS
T ss_pred HHHHHHHHHHHHhCCCCcEEEEcCCCCCcHHH------HHHHHHHHHHHHHHHHHHhhhhhhhhccC-cceeeeeccccc
Confidence 44433221 1 58999999986442222 234567888888777765533 2222 444444422111
Q ss_pred CC-C-CCCc---C-C-ceeecCCCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHh---CCceEEeecCeeecCCCCch
Q 011707 236 TP-N-IDIE---E-G-YITINHNGRTDTLPYPKQASSFYHLSKVHDSHNIAFTCKAW---GIRATDLNQGVVYGVRTDET 305 (479)
Q Consensus 236 ~~-~-~~~~---e-~-~~~~~~~~~~~~~~~~~~~~~~Y~~sK~~~E~~~~~~~~~~---gl~~~ivRp~~v~Gp~~~~~ 305 (479)
.. . .+.. . . ....... ............|+.+|++.+.+++.++.++ |++++.|.||.|-.|.....
T Consensus 120 ~~~~~~~~~~~~~~g~~~~i~s~---~~~~~~~~~~~~Y~asKaal~~ltr~lA~el~~~gIrVN~I~PG~i~T~~~~~~ 196 (257)
T d1fjha_ 120 LAFDKNPLALALEAGEEAKARAI---VEHAGEQGGNLAYAGSKNALTVAVRKRAAAWGEAGVRLNTIAPGATETPLLQAG 196 (257)
T ss_dssp SCGGGCTTHHHHHHTCHHHHHHH---HHTCCTTHHHHHHHHHHHHHHHHHHHTHHHHHHTTCEEEEEEECC---------
T ss_pred hhhhhhhhhhhccCCcEEEEeee---hhccCCCcchHHHHHHhhhhhccccccccccccccccccccccCCcCChhHHhh
Confidence 00 0 0000 0 0 0000000 0000011123469999999999999999874 79999999999865532110
Q ss_pred hhhHhhhcccCCCCcccchHHHHHHHHhcCCCeEEecCCCceeccccHHHHHHHHHHHHhCCCC--CCCceEEEeCCC
Q 011707 306 AMHEELCNRLDYDGVFGTALNRFCVQAAVGHPLTVYGKGGQTRGYLDIRDTVQCVELAIANPAQ--PGEFRVFNQFTE 381 (479)
Q Consensus 306 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Dva~a~~~~~~~~~~--~g~~~~~ni~~~ 381 (479)
. . -..+.....+ ......-+...+|++.+++.++..... .|+ ++.+.|+
T Consensus 197 ~---------------~--~~~~~~~~~~--------~~~PlgR~g~p~eva~~v~fL~S~~s~~itG~--~i~vDGG 247 (257)
T d1fjha_ 197 L---------------Q--DPRYGESIAK--------FVPPMGRRAEPSEMASVIAFLMSPAASYVHGA--QIVIDGG 247 (257)
T ss_dssp -------------------------------------CCCSTTSCCCTHHHHHHHHHHTSGGGTTCCSC--EEEESTT
T ss_pred c---------------C--CHHHHHHHHh--------cCCCCCCCcCHHHHHHHHHHHhCchhCCccCc--eEEeCCC
Confidence 0 0 0001111111 111223467899999999999865443 455 8888765
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=99.22 E-value=7.1e-12 Score=110.12 Aligned_cols=108 Identities=15% Similarity=0.211 Sum_probs=77.4
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
..+++|+||||||+|+||..+++.|+++|++|++++|..... .+..+.+.. ..++....+|+
T Consensus 19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~~~~----------------~~~~~~~~~--~~~~~~~~~d~ 80 (191)
T d1luaa1 19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKLDKA----------------QAAADSVNK--RFKVNVTAAET 80 (191)
T ss_dssp SCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHHH----------------HHHHHHHHH--HHTCCCEEEEC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccchHHH----------------HHHHHHHHh--ccchhhhhhhc
Confidence 356899999999999999999999999999999999875421 111122211 13566788999
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHH
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNV 212 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~l 212 (479)
+|.+++++++. ++|+||||||... ...+.+++...+++|+.+..+.
T Consensus 81 ~~~~~~~~~~~--~iDilin~Ag~g~---~~~~~e~~~~~~~~nv~~~~~~ 126 (191)
T d1luaa1 81 ADDASRAEAVK--GAHFVFTAGAIGL---ELLPQAAWQNESSIEIVADYNA 126 (191)
T ss_dssp CSHHHHHHHTT--TCSEEEECCCTTC---CCBCHHHHHTCTTCCEEEECCC
T ss_pred ccHHHHHHHhc--CcCeeeecCcccc---ccCCHHHHHhhhcceeehhHhh
Confidence 99999999998 8999999998532 1223333445556665554433
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.25 E-value=5.1e-06 Score=67.96 Aligned_cols=115 Identities=16% Similarity=0.094 Sum_probs=76.5
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
+|.|+||+|.+|.+++..|+.+|. +++.+|..... ....++.+.. .......-+ ...
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~------------------~~a~Dl~~~~--~~~~~~~~~-~~~ 60 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTP------------------GVAADLSHIE--TRATVKGYL-GPE 60 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHH------------------HHHHHHTTSS--SSCEEEEEE-SGG
T ss_pred eEEEECCCChHHHHHHHHHHhCCccceEEEEeccccc------------------hhhHHHhhhh--hhcCCCeEE-cCC
Confidence 799999999999999999998874 78888864321 0111222111 111111112 245
Q ss_pred HHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 166 FLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
+..+.++ +.|+||.+||....+...+ ...+..|+.-.+.+++.+++++.+..|+.+|.
T Consensus 61 ~~~~~~~--~aDivVitag~~~~~g~sR-----~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN 118 (144)
T d1mlda1 61 QLPDCLK--GCDVVVIPAGVPRKPGMTR-----DDLFNTNATIVATLTAACAQHCPDAMICIISN 118 (144)
T ss_dssp GHHHHHT--TCSEEEECCSCCCCTTCCG-----GGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred ChHHHhC--CCCEEEECCCcCCCCCCCc-----chHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 5667777 8999999999644332221 34678899999999999999998856666653
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=98.22 E-value=2.9e-06 Score=68.65 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=56.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+|+|+|+ |.+|..+++.|.+.|++|+++|..+. +.+.+... .++.++.||.+|++.
T Consensus 1 M~IvI~G~-G~~G~~la~~L~~~g~~v~vid~d~~--------------------~~~~~~~~--~~~~vi~Gd~~~~~~ 57 (132)
T d1lssa_ 1 MYIIIAGI-GRVGYTLAKSLSEKGHDIVLIDIDKD--------------------ICKKASAE--IDALVINGDCTKIKT 57 (132)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH--------------------HHHHHHHH--CSSEEEESCTTSHHH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCCcceecCChh--------------------hhhhhhhh--hhhhhccCcccchhh
Confidence 68999998 99999999999999999999997543 22222211 257889999999999
Q ss_pred HHHHhhhcCCCEEEEcc
Q 011707 167 LSESFKSFEPDAVVHFG 183 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A 183 (479)
++++--. ..|.++-+.
T Consensus 58 l~~~~i~-~a~~vv~~t 73 (132)
T d1lssa_ 58 LEDAGIE-DADMYIAVT 73 (132)
T ss_dssp HHHTTTT-TCSEEEECC
T ss_pred hhhcChh-hhhhhcccC
Confidence 9888422 688888653
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=98.03 E-value=2.1e-05 Score=64.36 Aligned_cols=116 Identities=19% Similarity=0.231 Sum_probs=72.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
+.|+|.|+|+ |++|..++..|+.+| .+|+++|+........ ..+ +....... .......+|+.
T Consensus 4 ~~~KI~IIGa-G~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~------------a~D-l~~a~~~~-~~~~~~~~d~~ 68 (146)
T d1ez4a1 4 NHQKVVLVGD-GAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGD------------ALD-LEDAQAFT-APKKIYSGEYS 68 (146)
T ss_dssp TBCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHH------------HHH-HHGGGGGS-CCCEEEECCGG
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcCCCcEEEEeecccchhHHH------------HHH-Hhcccccc-CCceEeeccHH
Confidence 4678999996 999999999999987 5899999765321110 000 11111111 23445556542
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
.++ +.|+||.+||....+.... ...+..|+.-.+.+.+...+.+.+..++.+|
T Consensus 69 -------~~~--~adivvitag~~~~~g~~r-----~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 69 -------DCK--DADLVVITAGAPQKPGESR-----LDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp -------GGT--TCSEEEECCCC---------------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred -------Hhc--cccEEEEecccccCCCCCH-----HHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 234 7999999998644322221 3356789999999999999998875555544
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=98.01 E-value=5e-05 Score=61.86 Aligned_cols=115 Identities=17% Similarity=0.122 Sum_probs=73.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhC---CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCC-ceeEEEcccC
Q 011707 87 KRVMIIGGDGYCGWATALHLSNK---GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGK-NIELYIGDIC 162 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~---G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~v~~Dl~ 162 (479)
|+|.|+|++|.+|.+++..|..+ +.++..+|..+. .. ....++.+.... ....+ .+
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~-~~----------------g~a~Dl~h~~~~~~~~~~-~~-- 60 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV-TP----------------GVAVDLSHIPTAVKIKGF-SG-- 60 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTT-HH----------------HHHHHHHTSCSSCEEEEE-CS--
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccccc-ch----------------hHHHHHHCCccccCCcEE-Ec--
Confidence 58999999999999999887643 468998886421 10 111122222111 22221 11
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
....+ .++ +.|+||.+||...-+.. +. ...+..|..-.+.+.+...+.+.+..++.+|.
T Consensus 61 -~~~~~-~~~--~aDvvvitaG~~~k~g~--~R---~dl~~~N~~i~~~v~~~i~~~~p~aivivvtN 119 (145)
T d2cmda1 61 -EDATP-ALE--GADVVLISAGVRRKPGM--DR---SDLFNVNAGIVKNLVQQVAKTCPKACIGIITN 119 (145)
T ss_dssp -SCCHH-HHT--TCSEEEECCSCCCCTTC--CG---GGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred -CCCcc-ccC--CCCEEEECCCccCCCCc--ch---hhHHHHHHHHHHHHHHHHHhhCCCcEEEEccC
Confidence 12233 455 78999999997532222 21 34678899999999999999988756666663
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.91 E-value=4.6e-05 Score=62.12 Aligned_cols=116 Identities=16% Similarity=0.105 Sum_probs=72.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcc---cCCCceeEEEccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS---LTGKNIELYIGDI 161 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~~Dl 161 (479)
|+|.|+||+|.+|..++..|+.+| .++..+|+...-. .......++.+ .....++....--
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~--------------~~~g~a~Dl~~~~~~~~~~~~~~~~~~ 66 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSIN--------------KLEGLREDIYDALAGTRSDANIYVESD 66 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHH--------------HHHHHHHHHHHHHTTSCCCCEEEEEET
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhH--------------hhhcccccchhcccccccCCccccCCc
Confidence 579999999999999999999998 4899998753210 00001111111 1122333322111
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEe
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKL 228 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~ 228 (479)
.|. +.++ +.|+||-+||....+...+ ...+..|..-.+.+.+...+.+.+ .++.+
T Consensus 67 ~d~----~~l~--~aDvVVitAG~~~~~g~sR-----~dl~~~Na~iv~~i~~~i~~~~~~-~iivV 121 (145)
T d1hyea1 67 ENL----RIID--ESDVVIITSGVPRKEGMSR-----MDLAKTNAKIVGKYAKKIAEICDT-KIFVI 121 (145)
T ss_dssp TCG----GGGT--TCSEEEECCSCCCCTTCCH-----HHHHHHHHHHHHHHHHHHHHHCCC-EEEEC
T ss_pred chH----HHhc--cceEEEEecccccCCCCCh-----hhhhhhhHHHHHHHHHHHhccCCC-eEEEE
Confidence 122 2344 7999999999643222221 345788999999999999988765 45444
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.90 E-value=7.1e-05 Score=61.28 Aligned_cols=117 Identities=17% Similarity=0.258 Sum_probs=76.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|.|+|| |++|..++..|+..|. +++.+|+.+...... . ..+..........+....+|.
T Consensus 5 ~~~KI~IiGa-G~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~------------a-~Dl~~~~~~~~~~~~~~~~d~- 69 (148)
T d1ldna1 5 GGARVVVIGA-GFVGASYVFALMNQGIADEIVLIDANESKAIGD------------A-MDFNHGKVFAPKPVDIWHGDY- 69 (148)
T ss_dssp TSCEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHH------------H-HHHHHHTTSSSSCCEEEECCG-
T ss_pred CCCeEEEECc-CHHHHHHHHHHHhcCCCceEEEEeeccccccch------------h-ccHhhCccccCCCeEEEECCH-
Confidence 4678999997 9999999999999874 799999764321110 0 001111112223444444553
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+.++ +.|+||.+||....+...+ ...+..|..-.+.+.+..++++.+..|+.+|
T Consensus 70 ------~~l~--daDvvvitag~~~~~~~~R-----~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 70 ------DDCR--DADLVVICAGANQKPGETR-----LDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp ------GGTT--TCSEEEECCSCCCCTTTCS-----GGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred ------HHhc--cceeEEEecccccccCcch-----hHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 2344 7999999998643222221 3356789999999999999998876677665
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.89 E-value=4.4e-05 Score=61.46 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=55.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|+++|.|+ |-+|+++++.|.+.|++|+++|.... +.+.+ .......+.+|.++++.
T Consensus 1 k~~iIiG~-G~~G~~la~~L~~~g~~vvvid~d~~--------------------~~~~~---~~~~~~~~~gd~~~~~~ 56 (134)
T d2hmva1 1 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEE--------------------KVNAY---ASYATHAVIANATEENE 56 (134)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHH--------------------HHHHT---TTTCSEEEECCTTCTTH
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCeEEEecCcHH--------------------HHHHH---HHhCCcceeeecccchh
Confidence 57889987 99999999999999999999997543 22222 23456778899999999
Q ss_pred HHHH-hhhcCCCEEEEcc
Q 011707 167 LSES-FKSFEPDAVVHFG 183 (479)
Q Consensus 167 ~~~~-~~~~~~D~Vih~A 183 (479)
++++ ++ ++|.||-+.
T Consensus 57 l~~a~i~--~a~~vi~~~ 72 (134)
T d2hmva1 57 LLSLGIR--NFEYVIVAI 72 (134)
T ss_dssp HHHHTGG--GCSEEEECC
T ss_pred hhccCCc--cccEEEEEc
Confidence 9887 55 688887554
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=97.86 E-value=0.0002 Score=58.95 Aligned_cols=125 Identities=13% Similarity=0.071 Sum_probs=75.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+.++|.|+|+ |.+|..++..|+..+. +++++|..+...... ...+................
T Consensus 5 ~k~~KI~IIGa-G~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~-------------a~Dl~~~~~~~~~~~~~~~~--- 67 (154)
T d1pzga1 5 QRRKKVAMIGS-GMIGGTMGYLCALRELADVVLYDVVKGMPEGK-------------ALDLSHVTSVVDTNVSVRAE--- 67 (154)
T ss_dssp SCCCEEEEECC-SHHHHHHHHHHHHHTCCEEEEECSSSSHHHHH-------------HHHHHHHHHHTTCCCCEEEE---
T ss_pred cCCCcEEEECC-CHHHHHHHHHHHhCCCceEEEEEeccccchhH-------------HHHHhhhccccCCeeEEecc---
Confidence 35689999998 9999999998888874 888888754321110 00011111111111111111
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
...+++++ +.|+|+-+||....+........-...+..|..-.+.+++.+.+.+.+..|+.+|
T Consensus 68 --~~~~~~~~--~adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 68 --YSYEAALT--GADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp --CSHHHHHT--TCSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred --Cchhhhhc--CCCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 12355666 8999999998754332211111123456789999999999999999874555555
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=97.79 E-value=3.7e-05 Score=65.00 Aligned_cols=74 Identities=18% Similarity=0.209 Sum_probs=54.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.|+|||.|| |++|.++++.|.++|++|++++|.... ++.+... .........+..+..
T Consensus 2 ~K~IliiGa-G~~G~~~a~~L~~~g~~V~v~dr~~~~--------------------a~~l~~~-~~~~~~~~~~~~~~~ 59 (182)
T d1e5qa1 2 TKSVLMLGS-GFVTRPTLDVLTDSGIKVTVACRTLES--------------------AKKLSAG-VQHSTPISLDVNDDA 59 (182)
T ss_dssp CCEEEEECC-STTHHHHHHHHHTTTCEEEEEESCHHH--------------------HHHHHTT-CTTEEEEECCTTCHH
T ss_pred CCEEEEECC-CHHHHHHHHHHHhCCCEEEEEECChHH--------------------HHHHHhc-ccccccccccccchh
Confidence 589999987 999999999999999999999987542 2222221 134555556677777
Q ss_pred HHHHHhhhcCCCEEEEcc
Q 011707 166 FLSESFKSFEPDAVVHFG 183 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A 183 (479)
...+.+. ..|.++.+.
T Consensus 60 ~~~~~i~--~~~~~i~~~ 75 (182)
T d1e5qa1 60 ALDAEVA--KHDLVISLI 75 (182)
T ss_dssp HHHHHHT--TSSEEEECS
T ss_pred hhHhhhh--ccceeEeec
Confidence 7777777 678888654
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=97.73 E-value=0.00035 Score=57.55 Aligned_cols=118 Identities=17% Similarity=0.175 Sum_probs=76.1
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
...++|-|+|+ |.+|..++..|+.+|. ++..+|+........ .. .+...............+|+
T Consensus 18 ~~~~KV~IIGa-G~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~------------al-Dl~h~~~~~~~~~~~~~~d~ 83 (160)
T d1i0za1 18 VPNNKITVVGV-GQVGMACAISILGKSLADELALVDVLEDKLKGE------------MM-DLQHGSLFLQTPKIVADKDY 83 (160)
T ss_dssp CCSSEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH------------HH-HHHHTGGGCCCSEEEECSSG
T ss_pred CCCCeEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccchhHHH------------HH-HHhccccccCCCeEEeccch
Confidence 34679999996 9999999999999985 899998764322111 00 01111111122222233443
Q ss_pred CChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
.+ ++ +.|+||..||....+...+ ...+..|..-.+.++...++.+.+..++.+|
T Consensus 84 ~~-------~~--~adiVVitAg~~~~~g~tR-----~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 84 SV-------TA--NSKIVVVTAGVRQQEGESR-----LNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp GG-------GT--TCSEEEECCSCCCCTTCCG-----GGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred hh-------cc--cccEEEEecCCccccCcch-----HHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 22 34 7999999999754332222 3456789999999999999988775677766
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=97.60 E-value=0.00039 Score=56.07 Aligned_cols=114 Identities=16% Similarity=0.112 Sum_probs=73.8
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcc--cCCCceeEEEcccCC
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS--LTGKNIELYIGDICD 163 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~v~~Dl~d 163 (479)
+|.|+||+|.+|..++..|+.+|. +++++|....... ......++.+ ..........+|.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~--------------~~g~a~Dl~~~~~~~~~~~i~~~~~-- 65 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDD--------------TVGQAADTNHGIAYDSNTRVRQGGY-- 65 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHH--------------HHHHHHHHHHHHTTTCCCEEEECCG--
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccc--------------cceeecchhhcccccCCceEeeCCH--
Confidence 799999999999999999999974 7888885322100 0000111111 0123344444543
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ .++ +.|+||-+||....+...+ ...+..|..-.+.+.+..++.+.+..++.+|
T Consensus 66 -~----~~~--~aDiVvitaG~~~~~g~~R-----~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 66 -E----DTA--GSDVVVITAGIPRQPGQTR-----IDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp -G----GGT--TCSEEEECCCCCCCTTCCH-----HHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred -H----Hhh--hcCEEEEecccccccCCch-----hhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 2 234 8999999999643222211 3467889999999999999998775666665
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=97.56 E-value=0.00037 Score=56.63 Aligned_cols=119 Identities=17% Similarity=0.079 Sum_probs=71.9
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
|+|.|+|+ |++|..++..|+.+| .+++.+|......... ..+ +...............+|.
T Consensus 2 kKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~------------~~D-l~~a~~~~~~~~~~~~~d~--- 64 (146)
T d1hyha1 2 RKIGIIGL-GNVGAAVAHGLIAQGVADDYVFIDANEAKVKAD------------QID-FQDAMANLEAHGNIVINDW--- 64 (146)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHH------------HHH-HHHHGGGSSSCCEEEESCG---
T ss_pred CeEEEECc-CHHHHHHHHHHHhcCCCceEEEEecccchhhhH------------HHh-hhccccccCCccceeccCH---
Confidence 68999996 999999999999987 4888888754321110 001 1111111122334444443
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ .++ +.|+||-+||........... +-...+..|..-.+.+.+..++.+.+..|+.+|
T Consensus 65 ~----~l~--~adiVVitaG~~~~~~~~~g~-~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 65 A----ALA--DADVVISTLGNIKLQQDNPTG-DRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp G----GGT--TCSEEEECCSCGGGTC--------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred H----Hhc--cccEEEEeccccccccccCCc-cHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 2 234 799999999964321110000 112346789999999999999998875555554
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=97.55 E-value=0.00016 Score=58.63 Aligned_cols=112 Identities=19% Similarity=0.281 Sum_probs=68.7
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhccc--CCCceeEEEcccC
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSL--TGKNIELYIGDIC 162 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~v~~Dl~ 162 (479)
++|.|+|+ |.+|..++..|+..|. +++++|+....... ...++.+. .........+|.
T Consensus 2 ~KI~IIGa-G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g----------------~a~Dl~~~~~~~~~~~~~~~~~- 63 (142)
T d1y6ja1 2 SKVAIIGA-GFVGASAAFTMALRQTANELVLIDVFKEKAIG----------------EAMDINHGLPFMGQMSLYAGDY- 63 (142)
T ss_dssp CCEEEECC-SHHHHHHHHHHHHTTCSSEEEEECCC---CCH----------------HHHHHTTSCCCTTCEEEC--CG-
T ss_pred CeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeccCCccce----------------eeeeeccCcccCCCeeEeeCcH-
Confidence 47889997 9999999999999974 89999976542211 11111111 012233333332
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+.++ +.|+||-+||....+.. +. ...+..|..-.+.+++.+.+.+.+..++.+|
T Consensus 64 ------~~~~--~adivvitag~~~~~~~--~r---~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvt 117 (142)
T d1y6ja1 64 ------SDVK--DCDVIVVTAGANRKPGE--TR---LDLAKKNVMIAKEVTQNIMKYYNHGVILVVS 117 (142)
T ss_dssp ------GGGT--TCSEEEECCCC--------CH---HHHHHHHHHHHHHHHHHHHHHCCSCEEEECS
T ss_pred ------HHhC--CCceEEEecccccCcCc--ch---hHHhhHHHHHHHHHHHHhhccCCCceEEEec
Confidence 2344 79999999986432222 11 3457889999999999999998775566655
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=97.50 E-value=0.00047 Score=56.22 Aligned_cols=122 Identities=11% Similarity=0.063 Sum_probs=73.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
..+|.|+|+ |.+|..++..|+..+ .++.++|+........ ...+................+ +.
T Consensus 3 ~~KI~IIGa-G~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~-------------a~Dl~~~~~~~~~~~~v~~~~--~~ 66 (150)
T d1t2da1 3 KAKIVLVGS-GMIGGVMATLIVQKNLGDVVLFDIVKNMPHGK-------------ALDTSHTNVMAYSNCKVSGSN--TY 66 (150)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCCEEEEECSSSSHHHHH-------------HHHHHTHHHHHTCCCCEEEEC--CG
T ss_pred CCeEEEECC-CHHHHHHHHHHHhCCCCeEEEEeccCCcceee-------------ecchhhhccccCCCcEEEecc--cc
Confidence 358999996 999999998888876 4788888754321110 000111111112233333322 12
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+.++ +.|+||-+||....+.......+-...+..|..-.+.+.+..++.+.+..++.+|
T Consensus 67 ----~~~~--~advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvt 125 (150)
T d1t2da1 67 ----DDLA--GADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVT 125 (150)
T ss_dssp ----GGGT--TCSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS
T ss_pred ----cccC--CCcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEec
Confidence 2334 7999999999654332221111123457889999999999999998875556555
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=0.00032 Score=54.02 Aligned_cols=70 Identities=24% Similarity=0.234 Sum_probs=55.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+.+|.|.|| |.+|+.++....+.|++|+++|......-. .-.-.++.+|+.|.
T Consensus 10 ~~~kigIlGg-GQL~rMla~aA~~lG~~v~v~d~~~~~PA~-------------------------~va~~~i~~~~~d~ 63 (111)
T d1kjqa2 10 AATRVMLLGS-GELGKEVAIECQRLGVEVIAVDRYADAPAM-------------------------HVAHRSHVINMLDG 63 (111)
T ss_dssp TCCEEEEESC-SHHHHHHHHHHHTTTCEEEEEESSTTCGGG-------------------------GGSSEEEECCTTCH
T ss_pred CCCEEEEEeC-CHHHHHHHHHHHHCCCEEEEEcCCCCCchh-------------------------hcCCeEEECCCCCH
Confidence 3568999997 999999999999999999999975442111 01235778999999
Q ss_pred HHHHHHhhhcCCCEEE
Q 011707 165 EFLSESFKSFEPDAVV 180 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vi 180 (479)
+.+.++....++|+|.
T Consensus 64 ~~l~~~~~~~~~DviT 79 (111)
T d1kjqa2 64 DALRRVVELEKPHYIV 79 (111)
T ss_dssp HHHHHHHHHHCCSEEE
T ss_pred HHHHHHHHhhCCceEE
Confidence 9999888655789986
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=97.48 E-value=0.00069 Score=56.72 Aligned_cols=119 Identities=11% Similarity=-0.017 Sum_probs=71.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhC---CC----eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEE
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNK---GY----EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYI 158 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~---G~----~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 158 (479)
..+|.||||+|.||.+++-.|++. |. .++.+|...... .+.....++..........+.
T Consensus 24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~--------------~l~g~~mdl~d~a~~~~~~~~ 89 (175)
T d7mdha1 24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQ--------------ALEGVAMELEDSLYPLLREVS 89 (175)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHH--------------HHHHHHHHHHTTTCTTEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccc--------------hhcchhhhhcccccccccCcc
Confidence 458999999999999999999875 32 345555432210 001111112222222222222
Q ss_pred cccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCC-cceEEEee
Q 011707 159 GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ-ECHLVKLG 229 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~-~~~~V~~S 229 (479)
. .....+.++ +.|+||-.||...-+...+ ...+..|..-.+.+.+++.+... ..+++.+|
T Consensus 90 ~----~~~~~~~~~--~aDvVvi~ag~~rkpg~tR-----~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~ 150 (175)
T d7mdha1 90 I----GIDPYEVFE--DVDWALLIGAKPRGPGMER-----AALLDINGQIFADQGKALNAVASKNVKVLVVG 150 (175)
T ss_dssp E----ESCHHHHTT--TCSEEEECCCCCCCTTCCH-----HHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred c----cccchhhcc--CCceEEEeeccCCCCCCcH-----HHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec
Confidence 1 122456777 8999999998754332222 33678899999999999999754 43555554
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.48 E-value=0.00044 Score=56.92 Aligned_cols=115 Identities=16% Similarity=0.165 Sum_probs=74.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcc---cCCCceeEEEc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKS---LTGKNIELYIG 159 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~v~~v~~ 159 (479)
+..+|.|+|+ |.+|..++..|+..|. +++++|+....... ...++.+ ..+........
T Consensus 18 ~~~KI~IIGa-G~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g----------------~alDl~~~~~~~~~~~~~~~~ 80 (159)
T d2ldxa1 18 SRCKITVVGV-GDVGMACAISILLKGLADELALVDADTDKLRG----------------EALDLQHGSLFLSTPKIVFGK 80 (159)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTSCSEEEEECSCHHHHHH----------------HHHHHHHTTTTCSCCEEEEES
T ss_pred CCCeEEEECC-CHHHHHHHHHHHhcCCCCEEEEEeCCchhhhc----------------cHHHHhCcchhcCCCeEEecc
Confidence 4458999996 9999999999999974 89999876432111 1111111 11222333334
Q ss_pred ccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 160 DICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
|.. .++ +.|+||.+||....+...+ ...++.|..-.+.+....++.+.+..++.+|-
T Consensus 81 d~~-------~~~--~adivvitag~~~~~~~~R-----~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN 137 (159)
T d2ldxa1 81 DYN-------VSA--NSKLVIITAGARMVSGQTR-----LDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN 137 (159)
T ss_dssp SGG-------GGT--TEEEEEECCSCCCCTTTCS-----SCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred chh-------hhc--cccEEEEecccccCCCCCH-----HHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 432 233 7899999998654332222 23568899999999999998887756666663
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=97.48 E-value=0.00055 Score=55.35 Aligned_cols=116 Identities=14% Similarity=0.066 Sum_probs=72.3
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
|+|.|+|| |.+|..++..|+..| .++.++|..+...... .................... .+.
T Consensus 1 mKI~IIGa-G~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~-------------~~d~~~~~~~~~~~~~i~~~--~~~ 64 (142)
T d1guza1 1 MKITVIGA-GNVGATTAFRLAEKQLARELVLLDVVEGIPQGK-------------ALDMYESGPVGLFDTKVTGS--NDY 64 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHH-------------HHHHHTTHHHHTCCCEEEEE--SCG
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCceEEEeccccccchhh-------------hhhhhcccchhcccceEEec--CCH
Confidence 57999997 999999999999997 5899999765321110 00011111111223333322 122
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ .++ +.|+||-+||....+...+ ...+..|..-.+.+.+...+.+.+..++.+|
T Consensus 65 ~----~~~--dadvvvitag~~~~~g~~r-----~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1guza1 65 A----DTA--NSDIVIITAGLPRKPGMTR-----EDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (142)
T ss_dssp G----GGT--TCSEEEECCSCCCCTTCCH-----HHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred H----Hhc--CCeEEEEEEecCCCCCCch-----HHHHHHHHHHHHHHHHHhhccCCCeEEEEec
Confidence 2 345 8999999999644222222 2356789999999999999988775555554
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=97.47 E-value=0.00088 Score=54.06 Aligned_cols=115 Identities=17% Similarity=0.174 Sum_probs=72.3
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+|.|+|+ |.+|.+++..|+.+|. ++.++|......... . ..+........ .......+ +.
T Consensus 2 ~Ki~IIGa-G~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~------------a-~Dl~~a~~~~~-~~~i~~~~--~~ 64 (143)
T d1llda1 2 TKLAVIGA-GAVGSTLAFAAAQRGIAREIVLEDIAKERVEAE------------V-LDMQHGSSFYP-TVSIDGSD--DP 64 (143)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHH------------H-HHHHHTGGGST-TCEEEEES--CG
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCcEEEEEEeccccchhH------------H-HHHHhccccCC-CceeecCC--CH
Confidence 47899997 9999999999999974 899998765321110 0 00111111111 22232222 22
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ .++ +.|+||-+||....+...+ ...+..|..-.+.+....++.+.+..++.+|
T Consensus 65 ~----~~~--daDvVVitaG~~~~~g~~R-----~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt 118 (143)
T d1llda1 65 E----ICR--DADMVVITAGPRQKPGQSR-----LELVGATVNILKAIMPNLVKVAPNAIYMLIT 118 (143)
T ss_dssp G----GGT--TCSEEEECCCCCCCTTCCH-----HHHHHHHHHHHHHHHHHHHHHCTTSEEEECC
T ss_pred H----Hhh--CCcEEEEecccccCCCCch-----hhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC
Confidence 2 244 7899999999754322222 3457889999999999999998775565555
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.41 E-value=0.00039 Score=58.11 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=30.7
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
.+.+|+|+| +|.+|...++.+...|.+|+++++...
T Consensus 26 ~g~~vlV~G-~G~vG~~~~~~ak~~Ga~vi~v~~~~~ 61 (170)
T d1e3ja2 26 LGTTVLVIG-AGPIGLVSVLAAKAYGAFVVCTARSPR 61 (170)
T ss_dssp TTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCCEEEEEc-ccccchhhHhhHhhhcccccccchHHH
Confidence 367999997 599999999988888999999987543
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=97.36 E-value=0.00077 Score=54.27 Aligned_cols=114 Identities=20% Similarity=0.246 Sum_probs=72.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
|+|.|+|+ |.+|..++..|+.+| .++..+|......... ..+ +..-.... .......+|.
T Consensus 1 mKI~IIGa-G~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~------------~~D-l~~~~~~~-~~~~~~~~~~--- 62 (140)
T d1a5za1 1 MKIGIVGL-GRVGSSTAFALLMKGFAREMVLIDVDKKRAEGD------------ALD-LIHGTPFT-RRANIYAGDY--- 62 (140)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHH------------HHH-HHHHGGGS-CCCEEEECCG---
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCCEEEEEecccccccch------------hcc-cccccccc-ccccccCCcH---
Confidence 57899997 999999999998887 4899998764322110 000 01111111 2344444442
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ .++ +.|+||-+||....+...+ ...+..|..-.+.+.+...+.+.+..++.+|
T Consensus 63 ~----~~~--~adivvitag~~~~~g~~r-----~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 63 A----DLK--GSDVVIVAAGVPQKPGETR-----LQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp G----GGT--TCSEEEECCCCCCCSSCCH-----HHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred H----Hhc--CCCEEEEecccccCCCcch-----hhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 2 245 7999999998644322221 2356779999999999999998885555544
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.36 E-value=0.00089 Score=53.99 Aligned_cols=115 Identities=16% Similarity=0.074 Sum_probs=71.4
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEE-cccCC
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYI-GDICD 163 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~-~Dl~d 163 (479)
|+|.|+|+ |.+|..++..|+.+| .++.++|.......... . .+............... .|+
T Consensus 1 MKI~IIGa-G~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~a------------l-Dl~~~~~~~~~~~~i~~~~d~-- 64 (142)
T d1ojua1 1 MKLGFVGA-GRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEA------------M-DLAHAAAGIDKYPKIVGGADY-- 64 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHH------------H-HHHHHHHTTTCCCEEEEESCG--
T ss_pred CEEEEECc-CHHHHHHHHHHHhcCcCceEEEEecccchhhHHH------------H-HHhhhccccCCCCccccCCCH--
Confidence 58999997 999999999999887 47999987643211100 0 01111111112222222 332
Q ss_pred hHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 164 FEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 164 ~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
+ .++ +.|+||-.||....+...+ ...+..|..-...+.+..++.+.+..++.+|
T Consensus 65 -~----~~~--~adiVvitag~~~~~g~~r-----~~l~~~n~~i~~~i~~~i~~~~p~aivivvt 118 (142)
T d1ojua1 65 -S----LLK--GSEIIVVTAGLARKPGMTR-----LDLAHKNAGIIKDIAKKIVENAPESKILVVT 118 (142)
T ss_dssp -G----GGT--TCSEEEECCCCCCCSSCCH-----HHHHHHHHHHHHHHHHHHHTTSTTCEEEECS
T ss_pred -H----Hhc--cccEEEEeccccCCCCCch-----HHHHHHhhHHHHHHHHHHHhhCCCcEEEEec
Confidence 2 344 7999999998644322221 3456789999999999999988774555554
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=97.35 E-value=0.00054 Score=55.38 Aligned_cols=115 Identities=17% Similarity=0.160 Sum_probs=68.4
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEE-EcccCCh
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELY-IGDICDF 164 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v-~~Dl~d~ 164 (479)
++|.|+|+ |.+|..++..|+.++. +++++|......... . ..+............+. ..|..+
T Consensus 2 ~KI~IIGa-G~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~------------~-~Dl~~~~~~~~~~~~i~~~~d~~~- 66 (142)
T d1uxja1 2 KKISIIGA-GFVGSTTAHWLAAKELGDIVLLDIVEGVPQGK------------A-LDLYEASPIEGFDVRVTGTNNYAD- 66 (142)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSSSSHHHHH------------H-HHHHTTHHHHTCCCCEEEESCGGG-
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCcceEEEEeeccccchhH------------H-HHhhccccccCCCCEEEecCcHHH-
Confidence 58999997 9999999999988874 888888754321110 0 00000111111223332 233322
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
++ +.|+||-+||....+.... ...+..|..-.+.+++...+.+.+..++.+|
T Consensus 67 ------~~--~advvvitag~~~~~~~~r-----~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 67 ------TA--NSDVIVVTSGAPRKPGMSR-----EDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp ------GT--TCSEEEECCSCC--------------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred ------hc--CCCEEEEeeeccCCcCcch-----hHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 33 7899999999654222221 2356789999999999999988775555544
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=0.0011 Score=54.30 Aligned_cols=75 Identities=19% Similarity=0.286 Sum_probs=56.1
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHH
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFL 167 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~ 167 (479)
.|+|.|. |-+|..+++.|.+.|++|++++...... .+........++.++.||.+|++.+
T Consensus 5 HiII~G~-g~~g~~l~~~L~~~~~~v~vId~d~~~~-------------------~~~~~~~~~~~~~vi~Gd~~d~~~L 64 (153)
T d1id1a_ 5 HFIVCGH-SILAINTILQLNQRGQNVTVISNLPEDD-------------------IKQLEQRLGDNADVIPGDSNDSSVL 64 (153)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCEEEEECCCHHH-------------------HHHHHHHHCTTCEEEESCTTSHHHH
T ss_pred EEEEECC-CHHHHHHHHHHHHcCCCEEEEeccchhH-------------------HHHHHHhhcCCcEEEEccCcchHHH
Confidence 5899988 9999999999999999999998643211 1111222235799999999999988
Q ss_pred HHHhhhcCCCEEEEcc
Q 011707 168 SESFKSFEPDAVVHFG 183 (479)
Q Consensus 168 ~~~~~~~~~D~Vih~A 183 (479)
+++--. ..|.||-+.
T Consensus 65 ~~a~i~-~a~~vi~~~ 79 (153)
T d1id1a_ 65 KKAGID-RCRAILALS 79 (153)
T ss_dssp HHHTTT-TCSEEEECS
T ss_pred HHhccc-cCCEEEEcc
Confidence 776433 688888664
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.28 E-value=0.00087 Score=54.24 Aligned_cols=33 Identities=15% Similarity=0.253 Sum_probs=26.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCC-C---eEEEEec
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKG-Y---EVAIVDS 118 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G-~---~V~~~dr 118 (479)
||+|-|.||||++|+.+++.|+++. + +++.+..
T Consensus 1 MkkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~s 37 (146)
T d1t4ba1 1 MQNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFST 37 (146)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEES
T ss_pred CcEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeec
Confidence 5789999999999999999888763 3 5665544
|
| >d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=97.27 E-value=0.00082 Score=55.12 Aligned_cols=119 Identities=12% Similarity=0.070 Sum_probs=69.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC----e-E--EEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEE
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY----E-V--AIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYI 158 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~----~-V--~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~ 158 (479)
.++|.|+||+|++|++++..|+..+. + + ..++..... ....................+.
T Consensus 4 p~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 69 (154)
T d1y7ta1 4 PVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAM--------------KALEGVVMELEDCAFPLLAGLE 69 (154)
T ss_dssp CEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGH--------------HHHHHHHHHHHTTTCTTEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccch--------------hhHcCchhhhhccccccccccc
Confidence 46999999999999999999988742 1 1 222211110 0011111112222223333333
Q ss_pred cccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCC-cceEEEee
Q 011707 159 GDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ-ECHLVKLG 229 (479)
Q Consensus 159 ~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~-~~~~V~~S 229 (479)
.. ....+.++ +.|+||-+||...-+...+ ...+..|+.-.+.+.+...+... ...++.+|
T Consensus 70 ~~----~~~~~~~~--~advViitaG~~~~pg~~r-----~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvs 130 (154)
T d1y7ta1 70 AT----DDPKVAFK--DADYALLVGAAPRKAGMER-----RDLLQVNGKIFTEQGRALAEVAKKDVKVLVVG 130 (154)
T ss_dssp EE----SCHHHHTT--TCSEEEECCCCCCCTTCCH-----HHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred cC----Cchhhhcc--cccEEEeecCcCCCCCCcH-----HHHHHHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 32 22346667 8999999999754222221 33567899999999999988643 43455555
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=97.25 E-value=0.002 Score=49.58 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=64.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccC
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+++|+|||+|+ |-+|..-++.|++.|.+|++++..... ....+. ...++.++..++.
T Consensus 9 ~l~~k~vlVvG~-G~va~~ka~~ll~~ga~v~v~~~~~~~-------------------~~~~~~--~~~~i~~~~~~~~ 66 (113)
T d1pjqa1 9 QLRDRDCLIVGG-GDVAERKARLLLEAGARLTVNALTFIP-------------------QFTVWA--NEGMLTLVEGPFD 66 (113)
T ss_dssp CCBTCEEEEECC-SHHHHHHHHHHHHTTBEEEEEESSCCH-------------------HHHHHH--TTTSCEEEESSCC
T ss_pred EeCCCEEEEECC-CHHHHHHHHHHHHCCCeEEEEeccCCh-------------------HHHHHH--hcCCceeeccCCC
Confidence 457999999998 999999999999999999998754331 111111 1246777776664
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
+.+ +. +.+.|+.+.+. -.-...+.+.|++.| .+|++..
T Consensus 67 ~~d-----l~--~~~lv~~at~d--------------------~~~n~~i~~~a~~~~---ilVNv~D 104 (113)
T d1pjqa1 67 ETL-----LD--SCWLAIAATDD--------------------DTVNQRVSDAAESRR---IFCNVVD 104 (113)
T ss_dssp GGG-----GT--TCSEEEECCSC--------------------HHHHHHHHHHHHHTT---CEEEETT
T ss_pred HHH-----hC--CCcEEeecCCC--------------------HHHHHHHHHHHHHcC---CEEEeCC
Confidence 432 34 67888865431 111236778888876 6777654
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=97.22 E-value=0.00034 Score=59.22 Aligned_cols=79 Identities=13% Similarity=0.067 Sum_probs=51.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
+|.+|||+||+|.+|...++.....|++|+++++.... .+..... +....+..-|-...
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~--------------------~~~~~~~-Ga~~vi~~~~~~~~ 87 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEK--------------------IAYLKQI-GFDAAFNYKTVNSL 87 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHH--------------------HHHHHHT-TCSEEEETTSCSCH
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHH--------------------HHHHHhh-hhhhhcccccccHH
Confidence 48899999999999999999999999999999865331 1111111 12222222332333
Q ss_pred HHHHHHhhhcCCCEEEEccc
Q 011707 165 EFLSESFKSFEPDAVVHFGE 184 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~ 184 (479)
+.+.+.....++|+||++.|
T Consensus 88 ~~~~~~~~~~Gvd~v~D~vG 107 (182)
T d1v3va2 88 EEALKKASPDGYDCYFDNVG 107 (182)
T ss_dssp HHHHHHHCTTCEEEEEESSC
T ss_pred HHHHHHhhcCCCceeEEecC
Confidence 44444444447999999986
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.21 E-value=0.00013 Score=62.36 Aligned_cols=35 Identities=31% Similarity=0.459 Sum_probs=32.1
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
|||.|+||+|.+|++|++.|+++|++|++.+|.+.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~e 35 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREE 35 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 57999999999999999999999999999998654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.17 E-value=0.00032 Score=59.38 Aligned_cols=36 Identities=19% Similarity=0.147 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
++.+|||+||+|.+|...++.+...|.+|+++++..
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~ 60 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD 60 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeeccc
Confidence 478999999999999999998888899999988643
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.0018 Score=47.97 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=34.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
.+++|+|+|.|. |-.|..+++.|.++|++|++.|....
T Consensus 2 ~~~~K~v~ViGl-G~sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 2 DYQGKNVVIIGL-GLTGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp CCTTCCEEEECC-SHHHHHHHHHHHHTTCCCEEEESSSS
T ss_pred CcCCCEEEEEeE-CHHHHHHHHHHHHCCCEEEEeeCCcC
Confidence 367999999998 88999999999999999999997544
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=97.13 E-value=0.0012 Score=53.85 Aligned_cols=40 Identities=30% Similarity=0.417 Sum_probs=35.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRR 122 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~ 122 (479)
...+++|.|+||.|.+|..|++.|.+.||+|+++|+....
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~ 45 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA 45 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc
Confidence 4467899999999999999999999999999999987543
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.05 E-value=0.00059 Score=58.81 Aligned_cols=34 Identities=41% Similarity=0.429 Sum_probs=30.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
|+|.|.|. ||+|..++..|++.|++|+++|....
T Consensus 1 MkI~ViGl-G~vGl~~a~~la~~g~~V~g~D~n~~ 34 (202)
T d1mv8a2 1 MRISIFGL-GYVGAVCAGCLSARGHEVIGVDVSST 34 (202)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEECC-CHhHHHHHHHHHhCCCcEEEEeCCHH
Confidence 67999975 99999999999999999999998654
|
| >d1u7za_ c.72.3.1 (A:) Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Coenzyme A biosynthesis bifunctional protein CoaBC, phosphopantothenoylcysteine synthase domain (CoaB) species: Escherichia coli [TaxId: 562]
Probab=97.02 E-value=0.001 Score=57.98 Aligned_cols=78 Identities=15% Similarity=0.132 Sum_probs=52.3
Q ss_pred CCCCcEEEEEc----------------CCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhh
Q 011707 83 PSKAKRVMIIG----------------GDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCW 146 (479)
Q Consensus 83 ~~~~~~vLVtG----------------atG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (479)
.++|++||||+ .||-.|.+|++++.++|++|+++.......
T Consensus 3 dl~g~~vlITaG~T~E~ID~VR~ItN~SSGk~G~aiA~~~~~~Ga~V~li~g~~~~~----------------------- 59 (223)
T d1u7za_ 3 DLKHLNIMITAGPTREPLDPVRYISDHSSGKMGFAIAAAAARRGANVTLVSGPVSLP----------------------- 59 (223)
T ss_dssp TTTTCEEEEEESBCEEESSSSEEEEECCCSHHHHHHHHHHHHTTCEEEEEECSCCCC-----------------------
T ss_pred ccCCCEEEEECCCCcccCCCcceeccCCcHHHHHHHHHHHHHcCCchhhhhcccccC-----------------------
Confidence 35688888886 589999999999999999999986533210
Q ss_pred cccCCCceeEEEcccCChHHHHHHhh-hc-CCCEEEEcccccCc
Q 011707 147 KSLTGKNIELYIGDICDFEFLSESFK-SF-EPDAVVHFGEQRSA 188 (479)
Q Consensus 147 ~~~~~~~v~~v~~Dl~d~~~~~~~~~-~~-~~D~Vih~A~~~~~ 188 (479)
....+..+.. ...+++.+.+. .. ..|++|++|++...
T Consensus 60 ---~p~~~~~~~~--~t~~~m~~~~~~~~~~~D~~i~aAAvsDf 98 (223)
T d1u7za_ 60 ---TPPFVKRVDV--MTALEMEAAVNASVQQQNIFIGCAAVADY 98 (223)
T ss_dssp ---CCTTEEEEEC--CSHHHHHHHHHHHGGGCSEEEECCBCCSE
T ss_pred ---ccccccccee--hhhHHHHHHHHhhhccceeEeeeechhhh
Confidence 0134444443 33433333332 11 68999999998654
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.00 E-value=0.003 Score=51.52 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=67.6
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC-------eEEEEecccccccccccCCCCCCccchhhhhh-hhhcccCCCceeEE
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY-------EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRL-RCWKSLTGKNIELY 157 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~-------~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~v 157 (479)
.++|.|+||+|.+|.+++..|+..+- +++.+|...... ..+.+ .............+
T Consensus 3 p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~---------------~~~~l~~~~~~~~~~~~~~~ 67 (154)
T d5mdha1 3 PIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMG---------------VLDGVLMELQDCALPLLKDV 67 (154)
T ss_dssp CEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHH---------------HHHHHHHHHHHTCCTTEEEE
T ss_pred ceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchh---------------hhhhhhhhhccccccccccc
Confidence 46999999999999999999987531 344555432210 00011 01111111222222
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCC-cceEEEee
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQ-ECHLVKLG 229 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~-~~~~V~~S 229 (479)
.. .....+.++ +.|+||-+||....+...+ ...+..|..-.+.+.+...+... ...++.+|
T Consensus 68 ~~----~~~~~~~~~--~~dvVVitag~~~~~g~sr-----~dll~~N~~i~k~~~~~i~k~a~~~~~iivvs 129 (154)
T d5mdha1 68 IA----TDKEEIAFK--DLDVAILVGSMPRRDGMER-----KDLLKANVKIFKCQGAALDKYAKKSVKVIVVG 129 (154)
T ss_dssp EE----ESCHHHHTT--TCSEEEECCSCCCCTTCCT-----TTTHHHHHHHHHHHHHHHHHHSCTTCEEEECS
T ss_pred cc----CcccccccC--CceEEEEecccCCCCCCch-----hHHHHHhHHHHHHHHHHHHhhCCCceEEEEec
Confidence 22 112345666 8999999999754332222 23568899999999988877543 32344444
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.93 E-value=0.0008 Score=54.45 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=26.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC---eEEEEe
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY---EVAIVD 117 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~---~V~~~d 117 (479)
.++|.|.|||||+|..|++.|.+++| ++..+.
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~ 36 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLA 36 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEe
Confidence 47899999999999999999986654 566554
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.00091 Score=55.98 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.+.+|||+||+|.+|...++.+...|++|+++++.
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~ 62 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGT 62 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCEEEEEeccccccccccccccccCccccccccc
Confidence 47899999999999999999998899999998864
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=96.91 E-value=0.00088 Score=55.98 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=32.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+|||+||+|.+|...++.+...|.+|+++++..
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~ 62 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRP 62 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccc
Confidence 478999999999999999999988999999988753
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.85 E-value=0.0023 Score=53.72 Aligned_cols=35 Identities=31% Similarity=0.263 Sum_probs=31.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
.|+|.|+|| |.+|..++..|.++|++|++++|...
T Consensus 1 sk~iaIiGa-G~~G~~~A~~l~~~G~~V~~~~r~~~ 35 (184)
T d1bg6a2 1 SKTYAVLGL-GNGGHAFAAYLALKGQSVLAWDIDAQ 35 (184)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCEEEEECc-cHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 379999998 99999999999999999999998643
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.83 E-value=0.0042 Score=51.53 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIR 121 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~ 121 (479)
.+.+|+|+|+ |.+|...+..+...|+ +|+++|+...
T Consensus 26 ~gd~VlI~G~-G~iG~~~~~~a~~~G~~~Vi~~d~~~~ 62 (171)
T d1pl8a2 26 LGHKVLVCGA-GPIGMVTLLVAKAMGAAQVVVTDLSAT 62 (171)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH
T ss_pred CCCEEEEECC-CccHHHHHHHHHHcCCceEEeccCCHH
Confidence 3678999987 9999999999999998 7998887543
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.0031 Score=53.07 Aligned_cols=85 Identities=13% Similarity=0.130 Sum_probs=58.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.+++|+|||.|+ |+.|+.++..|...|. ++++++|....... .....+.+... ........|+
T Consensus 15 ~l~~k~vlIlGa-GGaarai~~al~~~g~~~i~i~nR~~~~~~~-------------~~~l~~~~~~~--~~~~~~~~~~ 78 (182)
T d1vi2a1 15 DIKGKTMVLLGA-GGASTAIGAQGAIEGLKEIKLFNRRDEFFDK-------------ALAFAQRVNEN--TDCVVTVTDL 78 (182)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEECSSTTHHH-------------HHHHHHHHHHH--SSCEEEEEET
T ss_pred CcCCCEEEEECC-cHHHHHHHHHHhhcCCceEeeeccchHHHHH-------------HHHHHHHHHhh--cCcceEeeec
Confidence 357899999998 9999999999999987 67777775432110 11111112111 1234556888
Q ss_pred CChHHHHHHhhhcCCCEEEEcccc
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQ 185 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~ 185 (479)
.+.+.+...+. .+|+|||+...
T Consensus 79 ~~~~~~~~~~~--~~diiIN~Tp~ 100 (182)
T d1vi2a1 79 ADQQAFAEALA--SADILTNGTKV 100 (182)
T ss_dssp TCHHHHHHHHH--TCSEEEECSST
T ss_pred ccccchhhhhc--ccceeccccCC
Confidence 88888888887 79999999653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.76 E-value=0.0018 Score=54.46 Aligned_cols=36 Identities=22% Similarity=0.267 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIR 121 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~ 121 (479)
.|.+|||+|+ |.+|...++.+...|+ +|+++++...
T Consensus 28 ~G~~VlV~Ga-G~iG~~~~~~ak~~Ga~~Vi~~~~~~~ 64 (182)
T d1vj0a2 28 AGKTVVIQGA-GPLGLFGVVIARSLGAENVIVIAGSPN 64 (182)
T ss_dssp BTCEEEEECC-SHHHHHHHHHHHHTTBSEEEEEESCHH
T ss_pred CCCEEEEECC-Cccchhheecccccccccccccccccc
Confidence 4789999997 9999999999999997 7999987543
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.76 E-value=0.006 Score=48.01 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=29.7
Q ss_pred CCCCcEEEEEcCC---chhhHHHHHHHHhCC-CeEEEEec
Q 011707 83 PSKAKRVMIIGGD---GYCGWATALHLSNKG-YEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGat---G~iG~~l~~~Ll~~G-~~V~~~dr 118 (479)
.++.++|.|+||+ +..|..+.+.|.+.| ++|+.+..
T Consensus 5 lf~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP 44 (129)
T d2csua1 5 FFNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNI 44 (129)
T ss_dssp TTSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECS
T ss_pred hCCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEecc
Confidence 3567899999998 999999999987766 68988753
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.46 E-value=0.0013 Score=54.99 Aligned_cols=35 Identities=23% Similarity=0.196 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.+.+|+|.|+ |.+|...++.+...|+ +|+++|+..
T Consensus 27 ~g~~VlI~Ga-G~vGl~~~q~ak~~Ga~~Vi~~d~~~ 62 (174)
T d1jqba2 27 MGSSVVVIGI-GAVGLMGIAGAKLRGAGRIIGVGSRP 62 (174)
T ss_dssp TTCCEEEECC-SHHHHHHHHHHHTTTCSCEEEECCCH
T ss_pred CCCEEEEEcC-Ccchhhhhhhhhcccccccccccchh
Confidence 4678999986 9999999988888897 688888754
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=96.44 E-value=0.0048 Score=49.63 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=24.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC-C---eEEEEe
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG-Y---EVAIVD 117 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G-~---~V~~~d 117 (479)
|+|.|.|||||+|..|++.|+++. + ++..+.
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~s 35 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFS 35 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEE
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEec
Confidence 579999999999999999988753 3 455443
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=96.43 E-value=0.0019 Score=54.15 Aligned_cols=76 Identities=8% Similarity=-0.031 Sum_probs=51.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+.+|||+||+|.+|...++.+...|.+|+++++.... .+...++ +... ..|..++
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k--------------------~~~~~~l---Ga~~-vi~~~~~ 83 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQK--------------------AQSALKA---GAWQ-VINYREE 83 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHH--------------------HHHHHHH---TCSE-EEETTTS
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHH--------------------HHHHHhc---CCeE-EEECCCC
Confidence 37799999999999999999998899999999876532 1122222 2222 2355555
Q ss_pred HH---HHHHhhhcCCCEEEEccc
Q 011707 165 EF---LSESFKSFEPDAVVHFGE 184 (479)
Q Consensus 165 ~~---~~~~~~~~~~D~Vih~A~ 184 (479)
+. +.++-...++|+|+.+.+
T Consensus 84 d~~~~v~~~t~g~g~d~v~d~~g 106 (179)
T d1qora2 84 DLVERLKEITGGKKVRVVYDSVG 106 (179)
T ss_dssp CHHHHHHHHTTTCCEEEEEECSC
T ss_pred CHHHHHHHHhCCCCeEEEEeCcc
Confidence 43 333333346899999986
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.38 E-value=0.00099 Score=55.87 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+|||+||+|.+|...++.+...|.+|++..+..
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~ 66 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKA 66 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCT
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCch
Confidence 477999999999999999999989999999987643
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=96.36 E-value=0.0041 Score=50.96 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=50.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl 161 (479)
.+++++|||+|+ |-+|..+++.|...|. +|++..|... +...+.... +.. .
T Consensus 21 ~l~~~~ilviGa-G~~g~~v~~~L~~~g~~~i~v~nRt~~--------------------ka~~l~~~~--~~~-----~ 72 (159)
T d1gpja2 21 SLHDKTVLVVGA-GEMGKTVAKSLVDRGVRAVLVANRTYE--------------------RAVELARDL--GGE-----A 72 (159)
T ss_dssp CCTTCEEEEESC-CHHHHHHHHHHHHHCCSEEEEECSSHH--------------------HHHHHHHHH--TCE-----E
T ss_pred CcccCeEEEECC-CHHHHHHHHHHHhcCCcEEEEEcCcHH--------------------HHHHHHHhh--hcc-----c
Confidence 356899999998 9999999999999997 5777766432 111221111 122 2
Q ss_pred CChHHHHHHhhhcCCCEEEEcccc
Q 011707 162 CDFEFLSESFKSFEPDAVVHFGEQ 185 (479)
Q Consensus 162 ~d~~~~~~~~~~~~~D~Vih~A~~ 185 (479)
.+.+++.+.+. .+|+||.+.+.
T Consensus 73 ~~~~~~~~~l~--~~Divi~atss 94 (159)
T d1gpja2 73 VRFDELVDHLA--RSDVVVSATAA 94 (159)
T ss_dssp CCGGGHHHHHH--TCSEEEECCSS
T ss_pred ccchhHHHHhc--cCCEEEEecCC
Confidence 24456777887 79999999763
|
| >d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.0016 Score=46.19 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=32.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
++.+|||+||+|.+|...++.+...|++|+++.+.+
T Consensus 31 ~~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~s~ 66 (77)
T d1o8ca2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE 66 (77)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEECCH
Confidence 477999999999999999998888899999987654
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.34 E-value=0.0039 Score=52.26 Aligned_cols=37 Identities=19% Similarity=0.162 Sum_probs=33.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+++|.|.|. |-||+.+++.|..-|.+|+++|+..
T Consensus 39 ~l~gk~vgIiG~-G~IG~~va~~l~~~g~~v~~~d~~~ 75 (181)
T d1qp8a1 39 LIQGEKVAVLGL-GEIGTRVGKILAALGAQVRGFSRTP 75 (181)
T ss_dssp CCTTCEEEEESC-STHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cccCceEEEecc-ccccccceeeeeccccccccccccc
Confidence 367999999997 9999999999999999999998753
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.035 Score=48.68 Aligned_cols=125 Identities=18% Similarity=0.111 Sum_probs=68.9
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc--cccccccc--CCCCCCccchhhhhhhhhcccCC-CceeEE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI--RRLFDHQL--GLDSLTPIASIHDRLRCWKSLTG-KNIELY 157 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~v~~v 157 (479)
+++.+|+|.|+ |++|.+++..|++.|. +++++|... ......+. ....+. ........+.+.+... -.++.+
T Consensus 28 L~~~~VliiG~-GglGs~va~~La~~Gvg~i~lvD~D~Ve~sNL~RQ~l~~~~diG-~~K~~~a~~~l~~~np~~~i~~~ 105 (247)
T d1jw9b_ 28 LKDSRVLIVGL-GGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVG-QPKVESARDALTRINPHIAITPV 105 (247)
T ss_dssp HHHCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTT-SBHHHHHHHHHHHHCTTSEEEEE
T ss_pred HhCCCEEEECC-CHHHHHHHHHHHHcCCCeEEEECCcccchhhhhhhccccHhhcC-chHHHHHHHHHHHhhcccchhhh
Confidence 45679999996 9999999999999996 677876432 11111110 000011 1111111222222211 233333
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeecccccc
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYG 235 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g 235 (479)
...+. .+.....+. ..|+||.+.. |......+-++|.+.+. .+|+.+..+.+|
T Consensus 106 ~~~~~-~~~~~~~~~--~~divid~~d--------------------~~~~~~~in~~~~~~~i--p~i~g~~~~~~g 158 (247)
T d1jw9b_ 106 NALLD-DAELAALIA--EHDLVLDCTD--------------------NVAVRNQLNAGCFAAKV--PLVSGAAIRMEG 158 (247)
T ss_dssp CSCCC-HHHHHHHHH--TSSEEEECCS--------------------SHHHHHHHHHHHHHHTC--CEEEEEEEBTEE
T ss_pred hhhhh-hcccccccc--ccceeeeccc--------------------hhhhhhhHHHHHHHhCC--Cccccccccccc
Confidence 33333 344555666 7899997642 44444566778888773 577766655444
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=96.13 E-value=0.0025 Score=52.48 Aligned_cols=34 Identities=21% Similarity=0.199 Sum_probs=31.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
|||+|+|+ |.+|..++..|.+.|++|++++|...
T Consensus 1 MkI~IiGa-G~iG~~~a~~L~~~G~~V~~~~r~~~ 34 (167)
T d1ks9a2 1 MKITVLGC-GALGQLWLTALCKQGHEVQGWLRVPQ 34 (167)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CEEEEECc-CHHHHHHHHHHHHCCCceEEEEcCHH
Confidence 68999998 99999999999999999999998654
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=96.12 E-value=0.0077 Score=47.30 Aligned_cols=70 Identities=17% Similarity=0.059 Sum_probs=49.6
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEF 166 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~ 166 (479)
|.|+|.|. |-+|..+++.|. |++|.+++..+.. .+.+ ...++.++.||.++++.
T Consensus 1 kHivI~G~-g~~g~~l~~~L~--~~~i~vi~~d~~~--------------------~~~~---~~~~~~~i~Gd~~~~~~ 54 (129)
T d2fy8a1 1 RHVVICGW-SESTLECLRELR--GSEVFVLAEDENV--------------------RKKV---LRSGANFVHGDPTRVSD 54 (129)
T ss_dssp CCEEEESC-CHHHHHHHHTSC--GGGEEEEESCTTH--------------------HHHH---HHTTCEEEESCTTSHHH
T ss_pred CEEEEECC-CHHHHHHHHHHc--CCCCEEEEcchHH--------------------HHHH---HhcCccccccccCCHHH
Confidence 46889987 889999999984 6678877764331 1111 12478899999999998
Q ss_pred HHHHhhhcCCCEEEEcc
Q 011707 167 LSESFKSFEPDAVVHFG 183 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A 183 (479)
++++--. ..+.||-+.
T Consensus 55 L~~a~i~-~A~~vi~~~ 70 (129)
T d2fy8a1 55 LEKANVR-GARAVIVNL 70 (129)
T ss_dssp HHHTTCT-TCSEEEECC
T ss_pred HHHhhhh-cCcEEEEec
Confidence 8876332 678888553
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.10 E-value=0.0053 Score=50.89 Aligned_cols=38 Identities=21% Similarity=0.313 Sum_probs=33.1
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
..++|+|||.|+ |+.+++++..|.+.|.+|+++.|...
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~al~~~g~~i~I~nRt~~ 52 (170)
T d1nyta1 15 IRPGLRILLIGA-GGASRGVLLPLLSLDCAVTITNRTVS 52 (170)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSHH
T ss_pred CCCCCEEEEECC-cHHHHHHHHHhcccceEEEeccchHH
Confidence 356899999997 99999999999999999998887543
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.02 E-value=0.0074 Score=49.82 Aligned_cols=74 Identities=15% Similarity=0.116 Sum_probs=49.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+.+|+|.|+ |.||...++.+...|++++++++.... .+...++ +... ..|..+.
T Consensus 30 ~G~~VlI~Ga-G~vG~~a~qlak~~Ga~~i~~~~~~~~--------------------~~~a~~l---Gad~-~i~~~~~ 84 (168)
T d1uufa2 30 PGKKVGVVGI-GGLGHMGIKLAHAMGAHVVAFTTSEAK--------------------REAAKAL---GADE-VVNSRNA 84 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSGGG--------------------HHHHHHH---TCSE-EEETTCH
T ss_pred CCCEEEEecc-chHHHHHHHHhhcccccchhhccchhH--------------------HHHHhcc---CCcE-EEECchh
Confidence 4789999986 999999998888889999988875431 1111111 1111 2355566
Q ss_pred HHHHHHhhhcCCCEEEEcccc
Q 011707 165 EFLSESFKSFEPDAVVHFGEQ 185 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~ 185 (479)
+......+ ++|+||.+.|.
T Consensus 85 ~~~~~~~~--~~D~vid~~g~ 103 (168)
T d1uufa2 85 DEMAAHLK--SFDFILNTVAA 103 (168)
T ss_dssp HHHHTTTT--CEEEEEECCSS
T ss_pred hHHHHhcC--CCceeeeeeec
Confidence 55554444 79999999873
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.02 E-value=0.031 Score=45.52 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=31.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRR 122 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~ 122 (479)
+++|-|+|- |.+|..+++.|++.||+|++.||....
T Consensus 1 M~kIg~IGl-G~MG~~iA~~L~~~g~~v~~~d~~~~~ 36 (162)
T d3cuma2 1 MKQIAFIGL-GHMGAPMATNLLKAGYLLNVFDLVQSA 36 (162)
T ss_dssp CCEEEEECC-STTHHHHHHHHHHTTCEEEEECSSHHH
T ss_pred CCEEEEEEE-HHHHHHHHHHHHHCCCeEEEEECchhh
Confidence 468999975 999999999999999999999987543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.00 E-value=0.012 Score=48.87 Aligned_cols=33 Identities=24% Similarity=0.289 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEE-EEec
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVA-IVDS 118 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~-~~dr 118 (479)
.+.+|+|.|+ |.+|...+..+...|++++ +.++
T Consensus 28 ~g~~VlI~G~-G~iG~~~~~~ak~~g~~~v~~~~~ 61 (174)
T d1f8fa2 28 PASSFVTWGA-GAVGLSALLAAKVCGASIIIAVDI 61 (174)
T ss_dssp TTCEEEEESC-SHHHHHHHHHHHHHTCSEEEEEES
T ss_pred CCCEEEEeCC-CHHHhhhhhcccccccceeeeecc
Confidence 4789999997 9999999998888888655 4454
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.99 E-value=0.0043 Score=52.35 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=26.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEE
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAI 115 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~ 115 (479)
+.+|||+||+|.+|...++.+...|.++++
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi 60 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVV 60 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCccee
Confidence 478999999999999999988888986544
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=95.96 E-value=0.0087 Score=46.90 Aligned_cols=29 Identities=28% Similarity=0.355 Sum_probs=26.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEE
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAI 115 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~ 115 (479)
|+|.|.|++|-.|+.|++.+.++|+++.+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~ 29 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVL 29 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEE
Confidence 57999999999999999999999998775
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.94 E-value=0.0054 Score=50.68 Aligned_cols=35 Identities=26% Similarity=0.241 Sum_probs=30.1
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+|+|+|+ |.+|...++.+...|.+|+++++..
T Consensus 27 ~g~~vlI~Ga-G~vG~~a~q~ak~~G~~vi~~~~~~ 61 (168)
T d1piwa2 27 PGKKVGIVGL-GGIGSMGTLISKAMGAETYVISRSS 61 (168)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred CCCEEEEECC-CCcchhHHHHhhhccccccccccch
Confidence 4789999987 9999998887777899999998754
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.94 E-value=0.016 Score=48.33 Aligned_cols=32 Identities=34% Similarity=0.414 Sum_probs=29.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
|+|.|.|| |-.|.+++..|.+.|++|++..|.
T Consensus 1 MkI~ViGa-G~~GtalA~~la~~g~~V~l~~r~ 32 (180)
T d1txga2 1 MIVSILGA-GAMGSALSVPLVDNGNEVRIWGTE 32 (180)
T ss_dssp CEEEEESC-CHHHHHHHHHHHHHCCEEEEECCG
T ss_pred CEEEEECC-CHHHHHHHHHHHHCCCEEEEEEec
Confidence 68999998 999999999999999999998764
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=95.74 E-value=0.0066 Score=47.19 Aligned_cols=35 Identities=31% Similarity=0.566 Sum_probs=31.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
+++++|.|| |++|-.++..|.+.|.+|+++.+...
T Consensus 30 ~~~vvIIGg-G~iG~E~A~~l~~~g~~Vtli~~~~~ 64 (121)
T d1d7ya2 30 QSRLLIVGG-GVIGLELAATARTAGVHVSLVETQPR 64 (121)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECc-chhHHHHHHHhhcccceEEEEeeccc
Confidence 579999998 99999999999999999999987543
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=95.70 E-value=0.03 Score=45.58 Aligned_cols=35 Identities=26% Similarity=0.344 Sum_probs=31.1
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRR 122 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~ 122 (479)
|+|-|+|- |.+|..+++.|++.|++|++.||....
T Consensus 1 MkIgiIGl-G~MG~~~A~~L~~~G~~V~~~d~~~~~ 35 (161)
T d1vpda2 1 MKVGFIGL-GIMGKPMSKNLLKAGYSLVVSDRNPEA 35 (161)
T ss_dssp CEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred CEEEEEeh-hHHHHHHHHHHHHCCCeEEEEeCCcch
Confidence 57899975 999999999999999999999987553
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.66 E-value=0.008 Score=48.89 Aligned_cols=25 Identities=20% Similarity=0.271 Sum_probs=22.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY 111 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~ 111 (479)
=+|.|.|||||+|..|++.|.++.+
T Consensus 2 ~kVaIvGATGyvG~eLirlL~~H~f 26 (154)
T d2gz1a1 2 YTVAVVGATGAVGAQMIKMLEESTL 26 (154)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCCS
T ss_pred CEEEEECCCcHHHHHHHHHHHcCCC
Confidence 4799999999999999999988865
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=95.66 E-value=0.0081 Score=46.77 Aligned_cols=36 Identities=33% Similarity=0.613 Sum_probs=32.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
++++|+|.|| |++|-.++..|.+.|.+|+++.+..+
T Consensus 29 ~~k~vvViGg-G~iG~E~A~~l~~~g~~Vtlie~~~~ 64 (123)
T d1nhpa2 29 EVNNVVVIGS-GYIGIEAAEAFAKAGKKVTVIDILDR 64 (123)
T ss_dssp TCCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCCEEEEECC-hHHHHHHHHHhhccceEEEEEEecCc
Confidence 4679999988 99999999999999999999987543
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.62 E-value=0.0067 Score=51.08 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=31.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
-++|.|.|| |.+|..++..++..|++|+++|+...
T Consensus 4 I~~vaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (186)
T d1wdka3 4 VKQAAVLGA-GIMGGGIAYQSASKGTPILMKDINEH 38 (186)
T ss_dssp CSSEEEECC-HHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCeEEEEECCHH
Confidence 468999998 99999999999999999999998654
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.58 E-value=0.0079 Score=46.34 Aligned_cols=35 Identities=31% Similarity=0.546 Sum_probs=31.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
.++++|.|| |++|-.++..|.+.|.+|+++.+..+
T Consensus 22 p~~v~IiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~ 56 (117)
T d1ebda2 22 PKSLVVIGG-GYIGIELGTAYANFGTKVTILEGAGE 56 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSSS
T ss_pred CCeEEEECC-CccceeeeeeecccccEEEEEEecce
Confidence 478999998 99999999999999999999987543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.53 E-value=0.01 Score=48.89 Aligned_cols=36 Identities=17% Similarity=0.137 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.+.+|+|+|++|.+|...+..+...|. +|+++++..
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~ 63 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVRE 63 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSH
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccch
Confidence 467999999999999999998888885 888887653
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.50 E-value=0.024 Score=46.13 Aligned_cols=76 Identities=25% Similarity=0.337 Sum_probs=56.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChH
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFE 165 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~ 165 (479)
.-+|+|.|| |-.|..-++.+.+.|.+|+++|.+.. +++.++......++.. ..+.+
T Consensus 32 pa~V~ViGa-GvaG~~A~~~A~~lGA~V~~~D~~~~--------------------~l~~l~~~~~~~~~~~---~~~~~ 87 (168)
T d1pjca1 32 PGKVVILGG-GVVGTEAAKMAVGLGAQVQIFDINVE--------------------RLSYLETLFGSRVELL---YSNSA 87 (168)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCHH--------------------HHHHHHHHHGGGSEEE---ECCHH
T ss_pred CcEEEEECC-ChHHHHHHHHHhhCCCEEEEEeCcHH--------------------HHHHHHHhhcccceee---hhhhh
Confidence 468999998 99999999999999999999998643 2222322223344433 34677
Q ss_pred HHHHHhhhcCCCEEEEcccccC
Q 011707 166 FLSESFKSFEPDAVVHFGEQRS 187 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~~~~ 187 (479)
.+++.++ ..|+||.++-+..
T Consensus 88 ~l~~~~~--~aDivI~aalipG 107 (168)
T d1pjca1 88 EIETAVA--EADLLIGAVLVPG 107 (168)
T ss_dssp HHHHHHH--TCSEEEECCCCTT
T ss_pred hHHHhhc--cCcEEEEeeecCC
Confidence 8888888 7999999986543
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=95.48 E-value=0.047 Score=45.07 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=31.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRR 122 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~ 122 (479)
.+|-|+|- |.+|..|++.|++.|++|++.||....
T Consensus 3 ~nIg~IGl-G~MG~~mA~~L~~~G~~V~v~dr~~~~ 37 (176)
T d2pgda2 3 ADIALIGL-AVMGQNLILNMNDHGFVVCAFNRTVSK 37 (176)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSTHH
T ss_pred CcEEEEeE-hHHHHHHHHHHHHCCCeEEEEcCCHHH
Confidence 57899986 999999999999999999999987653
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=95.46 E-value=0.0083 Score=46.26 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=31.1
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.++|+|.|| |++|-.++..|.+.|.+|+++.+..
T Consensus 22 p~~v~IiGg-G~iG~E~A~~l~~~g~~Vtlv~~~~ 55 (117)
T d1onfa2 22 SKKIGIVGS-GYIAVELINVIKRLGIDSYIFARGN 55 (117)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CCEEEEECC-chHHHHHHHHHHhccccceeeehhc
Confidence 478999998 9999999999999999999998754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.41 E-value=0.011 Score=48.82 Aligned_cols=34 Identities=24% Similarity=0.154 Sum_probs=26.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSL 119 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~ 119 (479)
.+.+|||.|+ |.+|...++.+...|. .|+++++.
T Consensus 32 ~g~~vli~Ga-G~vG~~~~~~a~~~g~~~vv~~~~~ 66 (172)
T d1h2ba2 32 PGAYVAIVGV-GGLGHIAVQLLKVMTPATVIALDVK 66 (172)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCCEEEEeCC-ChHHHHHHHHHHhhcCcccccccch
Confidence 3678999986 9999998888877786 56666654
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=0.013 Score=41.26 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=31.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
+|+|.|.|| |.+|+.++..-.+.|++|+++|....
T Consensus 1 ~k~vgIlG~-GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 1 MKQVCVLGN-GQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp CEEEEEEBC-SHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CCEEEEEcC-CHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 479999998 99999999999999999999986543
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.37 E-value=0.007 Score=48.95 Aligned_cols=35 Identities=31% Similarity=0.597 Sum_probs=32.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.+++|+|||+|| |.+|..-++.|++.|.+|++++.
T Consensus 10 ~l~gkrvLViGg-G~va~~ka~~Ll~~GA~VtVvap 44 (150)
T d1kyqa1 10 QLKDKRILLIGG-GEVGLTRLYKLMPTGCKLTLVSP 44 (150)
T ss_dssp CCTTCEEEEEEE-SHHHHHHHHHHGGGTCEEEEEEE
T ss_pred eeCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEeC
Confidence 467999999999 99999999999999999999864
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=95.30 E-value=0.01 Score=50.21 Aligned_cols=37 Identities=30% Similarity=0.416 Sum_probs=33.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.|++|.|.|. |-||+.+++.|..-|.+|++.|+..
T Consensus 46 eL~gktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~ 82 (193)
T d1mx3a1 46 RIRGETLGIIGL-GRVGQAVALRAKAFGFNVLFYDPYL 82 (193)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred eeeCceEEEecc-ccccccceeeeeccccceeeccCcc
Confidence 467999999986 9999999999999999999998754
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=95.26 E-value=0.012 Score=49.84 Aligned_cols=37 Identities=19% Similarity=0.197 Sum_probs=32.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+++|.|.|- |-||+.+++.|..-|.+|+++|+..
T Consensus 40 el~gk~vgIiG~-G~IG~~va~~l~~fg~~V~~~d~~~ 76 (197)
T d1j4aa1 40 EVRDQVVGVVGT-GHIGQVFMQIMEGFGAKVITYDIFR 76 (197)
T ss_dssp CGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cccCCeEEEecc-cccchhHHHhHhhhcccccccCccc
Confidence 357899999986 9999999999999999999998653
|
| >d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: UBA3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.23 E-value=0.057 Score=51.32 Aligned_cols=127 Identities=16% Similarity=0.181 Sum_probs=70.7
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccc--ccc--CCCCCCccchhhhhhhhhcccC-CCceeEE
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFD--HQL--GLDSLTPIASIHDRLRCWKSLT-GKNIELY 157 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~v~~v 157 (479)
+++.+|||+|+ |++|..+++.|+..|. +++++|...=...+ .+. ....+.. .......+.+..+. .-++..+
T Consensus 35 l~~~kVlvvG~-GglG~ei~k~L~~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~-~Ka~~a~~~l~~~np~v~i~~~ 112 (426)
T d1yovb1 35 LDTCKVLVIGA-GGLGCELLKNLALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGR-PKAEVAAEFLNDRVPNCNVVPH 112 (426)
T ss_dssp HHHCCEEEECS-STTHHHHHHHHHTTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTS-BHHHHHHHHHHHHSTTCCCEEE
T ss_pred HhcCeEEEECC-CHHHHHHHHHHHHcCCCeEEEEECCCcchhhhcccccCChhHcCc-HHHHHHHHHHHhhCCCCceEee
Confidence 34678999998 8899999999999997 78888764311111 100 0001111 11111122222222 2356666
Q ss_pred EcccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcC----------CcceEEE
Q 011707 158 IGDICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFR----------QECHLVK 227 (479)
Q Consensus 158 ~~Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g----------~~~~~V~ 227 (479)
..++.+.. ...++ ++|+||.+.- |..+-..+-+.|.... ....+|+
T Consensus 113 ~~~i~~~~--~~~~~--~~DlVi~~~D--------------------n~~aR~~in~~c~~l~k~~~~~~~~~~~iPlI~ 168 (426)
T d1yovb1 113 FNKIQDFN--DTFYR--QFHIIVCGLD--------------------SIIARRWINGMLISLLNYEDGVLDPSSIVPLID 168 (426)
T ss_dssp CSCGGGBC--HHHHT--TCSEEEECCS--------------------CHHHHHHHHHHHHHTCCEETTEECGGGCCCEEE
T ss_pred eccccchH--HHHHH--hcchheeccC--------------------cHHHHHHHHHHHHHhhcccccccccccCCceEE
Confidence 67665533 35667 7899997742 4444455556665321 1125787
Q ss_pred eeccccccC
Q 011707 228 LGTMGEYGT 236 (479)
Q Consensus 228 ~SS~~v~g~ 236 (479)
.++.+.+|.
T Consensus 169 gg~~G~~G~ 177 (426)
T d1yovb1 169 GGTEGFKGN 177 (426)
T ss_dssp EEEETTEEE
T ss_pred eEEeeeEEE
Confidence 777655543
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=95.20 E-value=0.011 Score=45.34 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=31.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
.++|+|.|| |++|-.++..|.+.|.+|+++.+..+
T Consensus 21 p~~vvIiGg-G~ig~E~A~~l~~~G~~Vtlve~~~~ 55 (116)
T d1gesa2 21 PERVAVVGA-GYIGVELGGVINGLGAKTHLFEMFDA 55 (116)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEECC-ChhhHHHHHHhhccccEEEEEeecch
Confidence 368999998 99999999999999999999987543
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=95.18 E-value=0.032 Score=45.99 Aligned_cols=38 Identities=16% Similarity=0.243 Sum_probs=32.7
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
..++|+|+|.|+ |+.|+.++..|.+.+.+|+++.|...
T Consensus 15 ~~~~k~vlIlGa-GGaarai~~aL~~~~~~i~I~nR~~~ 52 (171)
T d1p77a1 15 LRPNQHVLILGA-GGATKGVLLPLLQAQQNIVLANRTFS 52 (171)
T ss_dssp CCTTCEEEEECC-SHHHHTTHHHHHHTTCEEEEEESSHH
T ss_pred CCCCCEEEEECC-cHHHHHHHHHHcccCceeeeccchHH
Confidence 356899999987 88999999999988889999988653
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.14 E-value=0.012 Score=45.68 Aligned_cols=35 Identities=34% Similarity=0.488 Sum_probs=31.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
.++++|.|| |+||-.++..|.+.|.+|+++.+..+
T Consensus 23 p~~~vIiG~-G~ig~E~A~~l~~lG~~Vtii~~~~~ 57 (122)
T d1v59a2 23 PKRLTIIGG-GIIGLEMGSVYSRLGSKVTVVEFQPQ 57 (122)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCeEEEECC-CchHHHHHHHHHhhCcceeEEEeccc
Confidence 479999998 99999999999999999999987543
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=95.11 E-value=0.0069 Score=51.11 Aligned_cols=37 Identities=27% Similarity=0.272 Sum_probs=32.4
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
+.+++|.|.|| |..|.+++..|.+.|++|++.+|...
T Consensus 5 ~~m~KI~ViGa-G~wGtAlA~~La~~g~~V~l~~r~~~ 41 (189)
T d1n1ea2 5 LYLNKAVVFGS-GAFGTALAMVLSKKCREVCVWHMNEE 41 (189)
T ss_dssp CCEEEEEEECC-SHHHHHHHHHHHTTEEEEEEECSCHH
T ss_pred ceeceEEEECC-CHHHHHHHHHHHHcCCeEEEEEecHH
Confidence 45678999998 99999999999999999999987543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=95.11 E-value=0.0026 Score=53.22 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=31.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
+.+|||+||+|.+|...++.....|++|+++.+..
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~ 66 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRE 66 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecch
Confidence 45899999999999999999988999999988754
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=95.08 E-value=0.0097 Score=48.86 Aligned_cols=34 Identities=21% Similarity=0.208 Sum_probs=30.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
|+|.|+|. |.+|..+++.|.+.|++|+++||...
T Consensus 1 MkI~iIG~-G~mG~~lA~~l~~~g~~V~~~d~~~~ 34 (165)
T d2f1ka2 1 MKIGVVGL-GLIGASLAGDLRRRGHYLIGVSRQQS 34 (165)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CEEEEEee-cHHHHHHHHHHHHCCCEEEEEECCch
Confidence 57999976 99999999999999999999998643
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.034 Score=45.20 Aligned_cols=36 Identities=14% Similarity=0.277 Sum_probs=32.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.+.||+|+|.|-+..+|+-|+..|.++|+.|+.++.
T Consensus 34 ~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~ 69 (166)
T d1b0aa1 34 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHR 69 (166)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECS
T ss_pred ccccceEEEEeccccccHHHHHHHHHhhcccccccc
Confidence 567999999999999999999999999999998754
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=95.04 E-value=0.021 Score=48.01 Aligned_cols=37 Identities=24% Similarity=0.225 Sum_probs=32.5
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+++|.|.|. |.||+.+++.|..-|.+|+..|+..
T Consensus 41 ~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d1sc6a1 41 EARGKKLGIIGY-GHIGTQLGILAESLGMYVYFYDIEN 77 (188)
T ss_dssp CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cccceEEEEeec-ccchhhhhhhcccccceEeeccccc
Confidence 357899999975 9999999999999999999998643
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=95.03 E-value=0.014 Score=46.14 Aligned_cols=35 Identities=31% Similarity=0.615 Sum_probs=31.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
+++|+|.|| |++|-.++..|.+.|.+|+++.+..+
T Consensus 35 ~k~v~VIGg-G~iG~E~A~~l~~~g~~Vtvie~~~~ 69 (133)
T d1q1ra2 35 DNRLVVIGG-GYIGLEVAATAIKANMHVTLLDTAAR 69 (133)
T ss_dssp TCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEECC-chHHHHHHHHHHhhCcceeeeeeccc
Confidence 679999998 99999999999999999999987544
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=95.03 E-value=0.074 Score=43.75 Aligned_cols=35 Identities=14% Similarity=0.202 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.+.+|+|.|+ |.+|...++.+...|. +|+++|+..
T Consensus 27 ~G~~VlV~Ga-GgvGl~a~~~ak~~G~~~Vi~~d~~~ 62 (174)
T d1p0fa2 27 PGSTCAVFGL-GGVGFSAIVGCKAAGASRIIGVGTHK 62 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSCG
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceeeccCChH
Confidence 4789999986 9999999999999986 688887754
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.00 E-value=0.013 Score=45.53 Aligned_cols=33 Identities=33% Similarity=0.644 Sum_probs=30.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.++++|.|| |++|-.++..|.+.|.+|+++.+.
T Consensus 32 ~~~vvIiGg-G~iG~E~A~~l~~~g~~Vtlv~~~ 64 (122)
T d1xhca2 32 SGEAIIIGG-GFIGLELAGNLAEAGYHVKLIHRG 64 (122)
T ss_dssp HSEEEEEEC-SHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCcEEEECC-cHHHHHHHHHhhcccceEEEEecc
Confidence 478999998 999999999999999999998764
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.93 E-value=0.012 Score=45.10 Aligned_cols=35 Identities=26% Similarity=0.618 Sum_probs=31.1
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
.++++|.|| |++|-.++..|.+.|.+|+++.+..+
T Consensus 21 p~~vvIiGg-G~~G~E~A~~l~~~g~~Vtlve~~~~ 55 (115)
T d1lvla2 21 PQHLVVVGG-GYIGLELGIAYRKLGAQVSVVEARER 55 (115)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEECC-CHHHHHHHHHHhhcccceEEEeeecc
Confidence 478999998 99999999999999999999987543
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.015 Score=45.31 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=31.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
.|+++|.|| |+||-.++..|.+.|.+|+++.+..+
T Consensus 22 pk~vvIvGg-G~iG~E~A~~l~~~G~~Vtlv~~~~~ 56 (125)
T d3grsa2 22 PGRSVIVGA-GYIAVEMAGILSALGSKTSLMIRHDK 56 (125)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred CCEEEEEcC-CccHHHHHHHHhcCCcEEEEEeeccc
Confidence 378999998 99999999999999999999987543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.87 E-value=0.077 Score=43.27 Aligned_cols=35 Identities=26% Similarity=0.384 Sum_probs=29.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~~ 121 (479)
||+|+|+|. |.+|..|++.|.+.|+ +|+++|+...
T Consensus 1 Mk~I~IIG~-G~mG~sla~~L~~~g~~~~I~~~D~~~~ 37 (171)
T d2g5ca2 1 MQNVLIVGV-GFMGGSFAKSLRRSGFKGKIYGYDINPE 37 (171)
T ss_dssp CCEEEEESC-SHHHHHHHHHHHHTTCCSEEEEECSCHH
T ss_pred CCEEEEEcc-CHHHHHHHHHHHhcCCCeEEEEEECChH
Confidence 568999986 9999999999999986 7888887543
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=94.84 E-value=0.011 Score=48.52 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=27.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhC-CCeEEE-Eecc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNK-GYEVAI-VDSL 119 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~-~dr~ 119 (479)
..+|.|.|++|-+|+.+++.+.+. +.++.+ +++.
T Consensus 4 ~ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~ 39 (162)
T d1diha1 4 NIRVAIAGAGGRMGRQLIQAALALEGVQLGAALERE 39 (162)
T ss_dssp BEEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCT
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecc
Confidence 468999999999999999999887 667654 4443
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=94.83 E-value=0.018 Score=44.33 Aligned_cols=34 Identities=21% Similarity=0.375 Sum_probs=31.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.++++|.|| |+||-.++..|.+.|.+|+++.+..
T Consensus 22 p~~i~IiG~-G~ig~E~A~~l~~~G~~Vtiv~~~~ 55 (119)
T d3lada2 22 PGKLGVIGA-GVIGLELGSVWARLGAEVTVLEAMD 55 (119)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCeEEEECC-ChHHHHHHHHHHHcCCceEEEEeec
Confidence 478999998 9999999999999999999998654
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=94.82 E-value=0.011 Score=49.39 Aligned_cols=32 Identities=16% Similarity=0.355 Sum_probs=27.7
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEe
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNK-GYEVAIVD 117 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~d 117 (479)
|++|.|.|||||+|..|++.|..+ .++|..+.
T Consensus 1 MikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~ 33 (179)
T d2g17a1 1 MLNTLIVGASGYAGAELVSYVNRHPHMTITALT 33 (179)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CcEEEEECcccHHHHHHHHHHHhCCCCceEeeE
Confidence 579999999999999999999998 56776554
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.72 E-value=0.044 Score=45.33 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=31.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIR 121 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~ 121 (479)
.+.+|+|+|+ |.+|...++.+...|. +|+++|....
T Consensus 29 ~g~tVlI~G~-GgvGl~ai~~ak~~G~~~Vi~vd~~~~ 65 (176)
T d1d1ta2 29 PGSTCVVFGL-GGVGLSVIMGCKSAGASRIIGIDLNKD 65 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCCEEEEECC-CchhHHHHHHHHHcCCceEEEecCcHH
Confidence 4779999987 9999999999999995 7999987543
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.71 E-value=0.068 Score=43.65 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=33.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.+.||+|+|.|.+.-+|+-|+..|+++|..|+.++.
T Consensus 36 ~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~ 71 (170)
T d1a4ia1 36 PIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHS 71 (170)
T ss_dssp CCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECT
T ss_pred ccccceEEEEecCCccchHHHHHHHhccCceEEEec
Confidence 568999999999999999999999999999998764
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=94.70 E-value=0.0079 Score=50.81 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=32.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
...++++.|.|. |.||+.+++.|...|.+|...|+..
T Consensus 44 ~l~g~tvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~ 80 (191)
T d1gdha1 44 KLDNKTLGIYGF-GSIGQALAKRAQGFDMDIDYFDTHR 80 (191)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred eecccceEEeec-ccchHHHHHHHHhhccccccccccc
Confidence 457899999987 9999999999999999999988643
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.68 E-value=0.034 Score=45.78 Aligned_cols=34 Identities=21% Similarity=0.169 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSL 119 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~ 119 (479)
.+.+|||.|+ |.+|...++.+...|. .|++.++.
T Consensus 28 ~G~tVlI~Ga-GGvG~~aiq~ak~~G~~~vi~~~~~ 62 (176)
T d2fzwa2 28 PGSVCAVFGL-GGVGLAVIMGCKVAGASRIIGVDIN 62 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred CCCEEEEecc-hhHHHHHHHHHHHHhcCceEEEccc
Confidence 4779999998 6799999998888896 45555543
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=94.66 E-value=0.033 Score=47.00 Aligned_cols=76 Identities=24% Similarity=0.114 Sum_probs=47.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICD 163 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d 163 (479)
.+.+|||.|+ |.+|...+..+...|. +|+++|.... +++...++ +...+. |-.+
T Consensus 25 ~G~tVlV~Ga-G~vGl~a~~~ak~~ga~~Vi~~d~~~~--------------------rl~~a~~~---Ga~~~~-~~~~ 79 (195)
T d1kola2 25 PGSTVYVAGA-GPVGLAAAASARLLGAAVVIVGDLNPA--------------------RLAHAKAQ---GFEIAD-LSLD 79 (195)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESCHH--------------------HHHHHHHT---TCEEEE-TTSS
T ss_pred CCCEEEEECc-CHHHHHHHHHHHhhcccceeeecccch--------------------hhHhhhhc---cccEEE-eCCC
Confidence 4789999986 9999888887777776 7888776432 22222211 233322 2222
Q ss_pred h---HHHHHHhhhcCCCEEEEcccc
Q 011707 164 F---EFLSESFKSFEPDAVVHFGEQ 185 (479)
Q Consensus 164 ~---~~~~~~~~~~~~D~Vih~A~~ 185 (479)
. +.+.++....++|++|.+.|.
T Consensus 80 ~~~~~~i~~~t~g~g~D~vid~vG~ 104 (195)
T d1kola2 80 TPLHEQIAALLGEPEVDCAVDAVGF 104 (195)
T ss_dssp SCHHHHHHHHHSSSCEEEEEECCCT
T ss_pred cCHHHHHHHHhCCCCcEEEEECccc
Confidence 2 344555555579999999884
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=94.62 E-value=0.047 Score=44.96 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIR 121 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~ 121 (479)
.+.+|||.|+ |.+|...+..+...|. +|+++++...
T Consensus 28 ~GdtVlV~Ga-GG~G~~~~~~~~~~g~~~Vi~~~~~~~ 64 (176)
T d2jhfa2 28 QGSTCAVFGL-GGVGLSVIMGCKAAGAARIIGVDINKD 64 (176)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCGG
T ss_pred CCCEEEEECC-CCcHHHHHHHHHHcCCceEEeecCcHH
Confidence 4789999999 7799999999999985 7888776543
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=94.59 E-value=0.1 Score=39.72 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=27.8
Q ss_pred cEEEEEcCC---chhhHHHHHHHHhCCCeEEEEe
Q 011707 87 KRVMIIGGD---GYCGWATALHLSNKGYEVAIVD 117 (479)
Q Consensus 87 ~~vLVtGat---G~iG~~l~~~Ll~~G~~V~~~d 117 (479)
|+|.|.|++ +-.|..+++.|++.||+|+.+.
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVn 35 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVN 35 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEc
Confidence 689999988 7789999999999999988774
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.53 E-value=0.016 Score=48.91 Aligned_cols=35 Identities=34% Similarity=0.465 Sum_probs=32.2
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
-|+|.|.|| |.+|..++..++..|++|+++|+...
T Consensus 4 IkkvaViGa-G~mG~~iA~~~a~~G~~V~l~D~~~~ 38 (192)
T d1f0ya2 4 VKHVTVIGG-GLMGAGIAQVAAATGHTVVLVDQTED 38 (192)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred eEEEEEECc-CHHHHHHHHHHHhCCCcEEEEECChH
Confidence 479999998 99999999999999999999998754
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.52 E-value=0.12 Score=42.15 Aligned_cols=82 Identities=21% Similarity=0.195 Sum_probs=54.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEccc-
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDI- 161 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl- 161 (479)
.++||+|+|.|-+.-+|+-|+..|+++|..|+.++......... ... + .-......|+
T Consensus 26 ~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~--~~~--------------~-----~~~~~~~~~~~ 84 (171)
T d1edza1 26 RLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTR--GES--------------L-----KLNKHHVEDLG 84 (171)
T ss_dssp TTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEES--CCC--------------S-----SCCCCEEEEEE
T ss_pred CCCCCEEEEECCccccHHHHHHHHHHCCCEEEEecccccccccc--ccc--------------e-----eeeeecccccc
Confidence 57899999999999999999999999999999876543221110 000 0 0001112222
Q ss_pred -CChHHHHHHhhhcCCCEEEEcccccC
Q 011707 162 -CDFEFLSESFKSFEPDAVVHFGEQRS 187 (479)
Q Consensus 162 -~d~~~~~~~~~~~~~D~Vih~A~~~~ 187 (479)
...+.+++... ..|+||..+|..+
T Consensus 85 ~~~~~~lk~~~~--~aDIvIsavG~p~ 109 (171)
T d1edza1 85 EYSEDLLKKCSL--DSDVVITGVPSEN 109 (171)
T ss_dssp ECCHHHHHHHHH--HCSEEEECCCCTT
T ss_pred ccchhHHhhccc--cCCEEEEccCCCc
Confidence 23566777777 6899999888644
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=94.48 E-value=0.076 Score=43.71 Aligned_cols=35 Identities=14% Similarity=0.191 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.+.+|+|+|+ |.||...+..+...|. .|++.|...
T Consensus 28 ~G~~VlV~G~-G~iGl~a~~~ak~~Ga~~Vi~~d~~~ 63 (174)
T d1e3ia2 28 PGSTCAVFGL-GCVGLSAIIGCKIAGASRIIAIDING 63 (174)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCCEEEEECC-ChHHHHHHHHHHHhCCceeeeeccch
Confidence 4789999986 9999999999999998 566666543
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.45 E-value=0.045 Score=45.58 Aligned_cols=35 Identities=20% Similarity=0.447 Sum_probs=31.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~ 121 (479)
+|||+|+|| |..|...|..|.++|+ +|+++++...
T Consensus 4 ~~kVaIIGa-GpaGl~aA~~l~~~G~~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGA-GPASISCASFLARLGYSDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECC-SHHHHHHHHHHHHTTCCCEEEEESSSS
T ss_pred CCEEEEECC-hHHHHHHHHHHHHCCCCeEEEEEecCc
Confidence 689999998 9999999999999998 5999988654
|
| >d1yova1 c.111.1.2 (A:6-534) Amyloid beta precursor protein-binding protein 1, APPBP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Ubiquitin activating enzymes (UBA) domain: Amyloid beta precursor protein-binding protein 1, APPBP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.34 E-value=0.036 Score=54.41 Aligned_cols=128 Identities=14% Similarity=0.020 Sum_probs=72.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccccccccccc----CCCCCCccchhhhhhhhhcccCC-CceeEEE
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLIRRLFDHQL----GLDSLTPIASIHDRLRCWKSLTG-KNIELYI 158 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~v~~v~ 158 (479)
...+|+|.|+ |.+|..+++-|+..|. +++++|...-...+... ....+.. .......+.+.++.. -.+..+.
T Consensus 24 ~~s~VlvvG~-gglG~Ei~knLvl~GVg~itivD~d~v~~sdL~rqf~~~~~diGk-~ka~~~~~~L~~lNp~v~i~~~~ 101 (529)
T d1yova1 24 ESAHVCLINA-TATGTEILKNLVLPGIGSFTIIDGNQVSGEDAGNNFFLQRSSIGK-NRAEAAMEFLQELNSDVSGSFVE 101 (529)
T ss_dssp HHCEEEECCC-SHHHHHHHHHHHTTTCSEEEEECCSBCCHHHHHHCTTCCGGGTTS-BHHHHHHHHHHTTCTTSBCCEES
T ss_pred hCCCEEEECC-CHHHHHHHHHHHHhcCCEEEEEcCCcCChhhcCchhcCChhhCCC-HHHHHHHHHHHHhCCCCcEEEEc
Confidence 3568999997 8899999999999995 78888764321111100 0011110 111112222333322 1344444
Q ss_pred cccCCh-HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccccccCC
Q 011707 159 GDICDF-EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMGEYGTP 237 (479)
Q Consensus 159 ~Dl~d~-~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~v~g~~ 237 (479)
.++.+. +...+.+. ++|+||.+.. |......+.+.|++.+ ..||++++.|.||..
T Consensus 102 ~~~~~~~~~~~~~~~--~~dvVv~~~~--------------------~~~~~~~l~~~c~~~~--ip~i~~~~~G~~G~v 157 (529)
T d1yova1 102 ESPENLLDNDPSFFC--RFTVVVATQL--------------------PESTSLRLADVLWNSQ--IPLLICRTYGLVGYM 157 (529)
T ss_dssp SCHHHHHHSCGGGGG--GCSEEEEESC--------------------CHHHHHHHHHHHHHHT--CCEEEEEEETTEEEE
T ss_pred CCchhhhhhHHHHhc--CCCEEEECCC--------------------CHHHHHHHHHHHHHcC--CCEEEEeccCCEEEE
Confidence 433221 01112344 6899996632 4445556888998888 469999998888864
Q ss_pred C
Q 011707 238 N 238 (479)
Q Consensus 238 ~ 238 (479)
.
T Consensus 158 ~ 158 (529)
T d1yova1 158 R 158 (529)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.34 E-value=0.13 Score=40.28 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=24.0
Q ss_pred EEEEEcCCchhhHHHHHHHHhC-CCeEEE
Q 011707 88 RVMIIGGDGYCGWATALHLSNK-GYEVAI 115 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~-G~~V~~ 115 (479)
||.|+|++|-.|+.+++.+.+. ++++.+
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~ 29 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSA 29 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEE
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEE
Confidence 6899999999999999988776 567664
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.047 Score=45.26 Aligned_cols=38 Identities=24% Similarity=0.462 Sum_probs=33.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
..++|+|+|+|| |..|-.-+..|.++||+|+++++...
T Consensus 40 ~~~~k~V~IIGa-GPAGL~AA~~la~~G~~Vtl~E~~~~ 77 (179)
T d1ps9a3 40 AVQKKNLAVVGA-GPAGLAFAINAAARGHQVTLFDAHSE 77 (179)
T ss_dssp CSSCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCCcEEEEECc-cHHHHHHHHHHHhhccceEEEeccCc
Confidence 345789999998 99999999999999999999988653
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=94.27 E-value=0.034 Score=47.05 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=32.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+|+|.|.|. |-||+.+++.|..-|.+|+++|+..
T Consensus 42 ~l~~ktvgIiG~-G~IG~~va~~l~~fg~~v~~~d~~~ 78 (199)
T d1dxya1 42 ELGQQTVGVMGT-GHIGQVAIKLFKGFGAKVIAYDPYP 78 (199)
T ss_dssp CGGGSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred cccceeeeeeec-ccccccccccccccceeeeccCCcc
Confidence 456899999986 9999999999999999999998753
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=94.26 E-value=0.028 Score=43.20 Aligned_cols=35 Identities=11% Similarity=0.212 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+++|+|.|| |++|-.++..|.+.|.+|+++.+..
T Consensus 21 ~~~~vvVvGg-G~ig~E~A~~l~~~g~~vt~i~~~~ 55 (121)
T d1mo9a2 21 PGSTVVVVGG-SKTAVEYGCFFNATGRRTVMLVRTE 55 (121)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CCCEEEEECC-CHHHHHHHHHHHhcchhheEeeccc
Confidence 3689999998 9999999999999999999998754
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.22 E-value=0.022 Score=47.65 Aligned_cols=38 Identities=24% Similarity=0.226 Sum_probs=32.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
...++++.|.|. |.||+.+++.|..-|.+|++.|+...
T Consensus 41 ~l~~k~vgiiG~-G~IG~~va~~~~~fg~~v~~~d~~~~ 78 (184)
T d1ygya1 41 EIFGKTVGVVGL-GRIGQLVAQRIAAFGAYVVAYDPYVS 78 (184)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred cccceeeeeccc-cchhHHHHHHhhhccceEEeecCCCC
Confidence 456899999986 99999999999999999999987543
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=94.18 E-value=0.023 Score=47.06 Aligned_cols=32 Identities=28% Similarity=0.411 Sum_probs=26.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEe
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKG-YEVAIVD 117 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~d 117 (479)
|++|.|.||||++|..|++.|.++- .++..+.
T Consensus 1 MikVaIvGATGyvG~eLirlL~~HP~~ei~~l~ 33 (176)
T d1vkna1 1 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLS 33 (176)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEE
T ss_pred CeEEEEECCCcHHHHHHHHHHHhCCCceEEEee
Confidence 5789999999999999999999874 4666654
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.12 E-value=0.023 Score=44.01 Aligned_cols=32 Identities=19% Similarity=0.435 Sum_probs=29.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.++++|+|| |+||-.++..|.+.|.+|+++.+
T Consensus 20 P~~vvIIGg-G~iG~E~A~~l~~lG~~Vtii~~ 51 (122)
T d1h6va2 20 PGKTLVVGA-SYVALECAGFLAGIGLDVTVMVR 51 (122)
T ss_dssp CCSEEEECC-SHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEECC-CccHHHHHHHHhhcCCeEEEEEe
Confidence 368999998 99999999999999999999875
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=93.97 E-value=0.032 Score=48.62 Aligned_cols=35 Identities=40% Similarity=0.693 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..|+|+|+|| |..|...|..|.++|++|+++++..
T Consensus 5 ~~~kVvVIGa-GiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGS-GVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCCcEEEECc-cHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 3568999998 9999999999999999999999753
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.94 E-value=0.02 Score=44.45 Aligned_cols=35 Identities=29% Similarity=0.504 Sum_probs=31.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
.++++|.|| |+||-.++..|.+.|.+|+++.+..+
T Consensus 25 p~~~viiG~-G~iglE~A~~~~~~G~~Vtvi~~~~~ 59 (123)
T d1dxla2 25 PKKLVVIGA-GYIGLEMGSVWGRIGSEVTVVEFASE 59 (123)
T ss_dssp CSEEEESCC-SHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred CCeEEEEcc-chHHHHHHHHHHhcCCeEEEEEEccc
Confidence 479999998 99999999999999999999987543
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=93.94 E-value=0.031 Score=49.07 Aligned_cols=35 Identities=26% Similarity=0.538 Sum_probs=31.7
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
..++|+|+|| |..|..++..|.++|++|+++++..
T Consensus 3 ~~~kV~IiGa-G~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGG-SISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CCSEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4578999998 9999999999999999999998754
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=93.92 E-value=0.027 Score=43.75 Aligned_cols=34 Identities=26% Similarity=0.481 Sum_probs=30.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.++++|.|| |+||-.++..|.+.|.+|+++.+..
T Consensus 26 p~~vvIiGg-G~IG~E~A~~~~~~G~~Vtive~~~ 59 (125)
T d1ojta2 26 PGKLLIIGG-GIIGLEMGTVYSTLGSRLDVVEMMD 59 (125)
T ss_dssp CSEEEEESC-SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCeEEEECC-CHHHHHHHHHhhcCCCEEEEEEeec
Confidence 479999998 9999999999999999999997654
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=93.91 E-value=0.028 Score=51.30 Aligned_cols=36 Identities=33% Similarity=0.636 Sum_probs=32.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
+.|+|+|+|| |.-|...|..|.+.|++|+++.+..+
T Consensus 1 k~KKI~IIGa-G~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVGA-GFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCCEEEEECC-SHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCCEEEEECC-cHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3689999998 99999999999999999999987654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=93.82 E-value=0.068 Score=43.45 Aligned_cols=35 Identities=26% Similarity=0.172 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.+|+|.|+ |.+|...++.+...|++|+++++.+
T Consensus 27 ~g~~VlV~Ga-G~vG~~~~~~ak~~G~~Vi~~~~~~ 61 (166)
T d1llua2 27 PGQWVAISGI-GGLGHVAVQYARAMGLHVAAIDIDD 61 (166)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCEEEEeec-cccHHHHHHHHHHcCCccceecchh
Confidence 4779999986 9999999988888899999998754
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.80 E-value=0.053 Score=44.11 Aligned_cols=36 Identities=25% Similarity=0.163 Sum_probs=30.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
.+.+|||.|+ |.+|...+..+...|++|+++++...
T Consensus 27 ~g~~vlv~G~-G~iG~~a~~~a~~~g~~v~~~~~~~~ 62 (168)
T d1rjwa2 27 PGEWVAIYGI-GGLGHVAVQYAKAMGLNVVAVDIGDE 62 (168)
T ss_dssp TTCEEEEECC-STTHHHHHHHHHHTTCEEEEECSCHH
T ss_pred CCCEEEEeec-ccchhhhhHHHhcCCCeEeccCCCHH
Confidence 3679999976 99999998888888999999886543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=93.80 E-value=0.02 Score=48.10 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=32.8
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
...++++.|.|. |-||+.+++.|..-|.+|...|+..
T Consensus 41 ~l~~~~vgiiG~-G~IG~~va~~l~~fg~~v~~~d~~~ 77 (188)
T d2naca1 41 DLEAMHVGTVAA-GRIGLAVLRRLAPFDVHLHYTDRHR 77 (188)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred eccccceeeccc-cccchhhhhhhhccCceEEEEeecc
Confidence 457899999986 9999999999999999999998754
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.69 E-value=0.0094 Score=48.27 Aligned_cols=33 Identities=30% Similarity=0.190 Sum_probs=29.0
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
|+|-|+|. |.+|+.+++.|+++|++|++.++..
T Consensus 1 MkIgiIG~-G~mG~~ia~~l~~~g~~v~~~~~~~ 33 (152)
T d1i36a2 1 LRVGFIGF-GEVAQTLASRLRSRGVEVVTSLEGR 33 (152)
T ss_dssp CEEEEESC-SHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred CEEEEEcH-HHHHHHHHHHHHHCCCeEEEEcCch
Confidence 57899975 9999999999999999999887644
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=93.59 E-value=0.032 Score=46.56 Aligned_cols=33 Identities=21% Similarity=0.538 Sum_probs=27.4
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC-CeEEEEe
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG-YEVAIVD 117 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~d 117 (479)
++.+|.|.|||||.|..|++.|.++- .++..+.
T Consensus 4 ~kikVaIlGATGyvG~elirLL~~HP~~ei~~l~ 37 (183)
T d2cvoa1 4 EEVRIAVLGASGYTGAEIVRLLANHPQFRIKVMT 37 (183)
T ss_dssp SCEEEEEESCSSHHHHHHHHHHTTCSSEEEEEEE
T ss_pred CccEEEEECcccHHHHHHHHHHHhCCCceEEEEe
Confidence 45689999999999999999999873 4666554
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=93.58 E-value=0.064 Score=39.34 Aligned_cols=36 Identities=28% Similarity=0.344 Sum_probs=29.9
Q ss_pred CCcEEEEEcCCchhh-HHHHHHHHhCCCeEEEEecccc
Q 011707 85 KAKRVMIIGGDGYCG-WATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 85 ~~~~vLVtGatG~iG-~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
+.|+|.+.|- |++| +.||+.|.++|++|.+-|+...
T Consensus 7 ~~~~ihfiGi-gG~GMs~LA~~L~~~G~~VsGSD~~~~ 43 (96)
T d1p3da1 7 RVQQIHFIGI-GGAGMSGIAEILLNEGYQISGSDIADG 43 (96)
T ss_dssp TCCEEEEETT-TSTTHHHHHHHHHHHTCEEEEEESCCS
T ss_pred hCCEEEEEEE-CHHHHHHHHHHHHhCCCEEEEEeCCCC
Confidence 5789999987 6666 6789999999999999997543
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=93.54 E-value=0.024 Score=46.59 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=30.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
+.+|||+||+|.+|...++.....|++|++..+..
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~ 58 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNR 58 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCH
Confidence 55799999999999999988888899999988753
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=93.52 E-value=0.041 Score=46.03 Aligned_cols=36 Identities=17% Similarity=-0.004 Sum_probs=29.6
Q ss_pred CcEEEE-EcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMI-IGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLV-tGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
+.+++| +||+|.+|...++.....|.+|+++.+...
T Consensus 29 g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~ 65 (189)
T d1gu7a2 29 GKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRP 65 (189)
T ss_dssp TTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCT
T ss_pred CCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEeccc
Confidence 566677 599999999999988888999999876543
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=93.45 E-value=0.019 Score=48.75 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=32.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.+++++|.|-|- |-+|.++++.|.+.|.+|++.|..
T Consensus 24 ~L~gk~v~IqG~-G~VG~~~A~~L~~~Gakvvv~d~d 59 (201)
T d1c1da1 24 SLDGLTVLVQGL-GAVGGSLASLAAEAGAQLLVADTD 59 (201)
T ss_dssp CSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEecch
Confidence 578999999985 999999999999999999988764
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=93.38 E-value=0.036 Score=45.41 Aligned_cols=34 Identities=24% Similarity=0.440 Sum_probs=29.8
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCC--eEEEEeccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGY--EVAIVDSLI 120 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~--~V~~~dr~~ 120 (479)
||||+|+|| |++|-.++..|.+.|. +|+++++..
T Consensus 2 gkrivIvGg-G~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVGG-GTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCcEEEECc-cHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 799999998 9999999999999875 788887654
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=93.25 E-value=0.064 Score=43.08 Aligned_cols=33 Identities=27% Similarity=0.226 Sum_probs=29.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
|+|.+.|+ |-+|.+|++.|++.|++|++.+|..
T Consensus 1 MkIg~IG~-G~mG~al~~~l~~~~~~i~v~~r~~ 33 (152)
T d2ahra2 1 MKIGIIGV-GKMASAIIKGLKQTPHELIISGSSL 33 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred CEEEEEec-cHHHHHHHHHHHhCCCeEEEEcChH
Confidence 57899976 9999999999999999999887753
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=93.16 E-value=0.038 Score=49.27 Aligned_cols=34 Identities=38% Similarity=0.567 Sum_probs=31.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
+|+|+|+|| |.-|-.-+.+|.+.|++|+++++..
T Consensus 1 ~KkV~IIGa-G~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 1 AKRVAVIGA-GVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CCEEEEECc-CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 589999998 9999999999999999999998653
|
| >d1r0ka2 c.2.1.3 (A:3-126,A:265-290) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Zymomonas mobilis [TaxId: 542]
Probab=93.11 E-value=0.11 Score=41.51 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=28.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhC--CCeEEEEec
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNK--GYEVAIVDS 118 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~--G~~V~~~dr 118 (479)
+|+|.|.|+||-||...+.-+.+. .++|.++..
T Consensus 2 pK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~lsa 36 (150)
T d1r0ka2 2 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTA 36 (150)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHTGGGEEEEEEEE
T ss_pred CcEEEEECCCcHHHHHHHHHHHcCCCCcEEEEEEe
Confidence 589999999999999999988775 478887754
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=93.10 E-value=0.1 Score=40.31 Aligned_cols=95 Identities=8% Similarity=-0.009 Sum_probs=58.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
..+|+|.|| |.+|..|++.|... |++++++....+...+. .. .++.++ ..
T Consensus 3 ~~~v~I~Ga-G~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~---------------------~I--~Gi~V~-----~~ 53 (126)
T d2dt5a2 3 KWGLCIVGM-GRLGSALADYPGFGESFELRGFFDVDPEKVGR---------------------PV--RGGVIE-----HV 53 (126)
T ss_dssp CEEEEEECC-SHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC---------------------EE--TTEEEE-----EG
T ss_pred CceEEEEcC-CHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC---------------------EE--CCEEEe-----cH
Confidence 348999998 99999999987544 78888764322211110 00 244443 23
Q ss_pred HHHHHHhhhcCCCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeeccc
Q 011707 165 EFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGTMG 232 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS~~ 232 (479)
+.++++.+. .+++++-+.. -...+.+++.|.++|++ .|..++...
T Consensus 54 ~~l~~~~~~-~i~iai~~i~---------------------~~~~~~I~d~l~~~gIk-~I~~f~~~~ 98 (126)
T d2dt5a2 54 DLLPQRVPG-RIEIALLTVP---------------------REAAQKAADLLVAAGIK-GILNFAPVV 98 (126)
T ss_dssp GGHHHHSTT-TCCEEEECSC---------------------HHHHHHHHHHHHHHTCC-EEEECSSSC
T ss_pred HHHHHHHhh-cccEEEEeCC---------------------HHHHHHHHHHHHHcCCC-EEeecCcee
Confidence 456776664 5676665432 12234688888888987 777776543
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.08 E-value=0.16 Score=39.98 Aligned_cols=33 Identities=21% Similarity=0.328 Sum_probs=29.6
Q ss_pred CCcEEEEEcCC---chhhHHHHHHHHhCCCeEEEEe
Q 011707 85 KAKRVMIIGGD---GYCGWATALHLSNKGYEVAIVD 117 (479)
Q Consensus 85 ~~~~vLVtGat---G~iG~~l~~~Ll~~G~~V~~~d 117 (479)
+.|+|.|+||+ +-.|..+++.|.+.||+|+.+.
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVn 53 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVN 53 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEEC
Confidence 35799999998 7899999999999999998874
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.07 E-value=0.19 Score=44.57 Aligned_cols=36 Identities=19% Similarity=0.124 Sum_probs=32.4
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.+++++|+|-|- |-+|.++++.|.+.|.+|++++..
T Consensus 33 ~L~gktvaIqGf-GnVG~~~A~~L~e~Gakvv~vsD~ 68 (293)
T d1hwxa1 33 GFGDKTFAVQGF-GNVGLHSMRYLHRFGAKCVAVGES 68 (293)
T ss_dssp SSTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEEEET
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEEEEcc
Confidence 567999999987 999999999999999999988654
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=92.55 E-value=0.042 Score=48.61 Aligned_cols=32 Identities=31% Similarity=0.459 Sum_probs=29.4
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.|+|+|| |.+|..+|.+|+++|++|+++++..
T Consensus 6 DvvIIGa-Gi~Gls~A~~La~~G~~V~vlE~~~ 37 (276)
T d1ryia1 6 EAVVIGG-GIIGSAIAYYLAKENKNTALFESGT 37 (276)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3999998 9999999999999999999998753
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=92.51 E-value=0.089 Score=45.36 Aligned_cols=36 Identities=31% Similarity=0.487 Sum_probs=32.6
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
...++|+|+|| |..|...+..|.++|++|+++++..
T Consensus 47 ~~~k~VvIIGa-GpAGl~aA~~l~~~G~~v~l~E~~~ 82 (233)
T d1djqa3 47 KNKDSVLIVGA-GPSGSEAARVLMESGYTVHLTDTAE 82 (233)
T ss_dssp SSCCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cCCceEEEEcc-cHHHHHHHHHHHHhccceeeEeecc
Confidence 35789999998 9999999999999999999998754
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=91.99 E-value=0.27 Score=42.10 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=33.2
Q ss_pred CCCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 82 DPSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 82 ~~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
..+++++|+|-|- |-+|.++++.|.+.|.+|++.|..
T Consensus 35 ~~l~g~~v~IqG~-GnVG~~~a~~L~~~Gakvv~~d~~ 71 (230)
T d1leha1 35 DSLEGLAVSVQGL-GNVAKALCKKLNTEGAKLVVTDVN 71 (230)
T ss_dssp CCCTTCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSC
T ss_pred CCCCCCEEEEECC-CHHHHHHHHHHHHCCCEEEeeccc
Confidence 3578999999986 999999999999999999988764
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=91.98 E-value=0.2 Score=39.99 Aligned_cols=35 Identities=31% Similarity=0.397 Sum_probs=28.7
Q ss_pred CcEEEEE-cCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 86 AKRVMII-GGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 86 ~~~vLVt-GatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
++.++|. .+.||||..++..|.+.|.+|+++.+..
T Consensus 39 ~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~ 74 (156)
T d1djqa2 39 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH 74 (156)
T ss_dssp CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCC
Confidence 5566665 3459999999999999999999998643
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=91.95 E-value=0.37 Score=39.19 Aligned_cols=122 Identities=14% Similarity=0.160 Sum_probs=66.8
Q ss_pred CcEEEEEcCCchhhHH--HHHHHHhC----CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEc
Q 011707 86 AKRVMIIGGDGYCGWA--TALHLSNK----GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIG 159 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~--l~~~Ll~~----G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 159 (479)
.++|.|.|| |.+|.. ++..|+.. +.+++.+|..+..... .................+..
T Consensus 2 ~mKI~iIGa-Gsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~-------------~~~~~~~~~~~~~~~~~i~~- 66 (171)
T d1obba1 2 SVKIGIIGA-GSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDA-------------ILTIAKKYVEEVGADLKFEK- 66 (171)
T ss_dssp CCEEEEETT-TCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHH-------------HHHHHHHHHHHTTCCCEEEE-
T ss_pred CcEEEEECC-CHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHH-------------HHHHHHHHHHhcCCCeEEEE-
Confidence 468999997 888865 34445543 4589999986542111 00111111111222332222
Q ss_pred ccCChHHHHHHhhhcCCCEEEEcccccCcccccc-------------------c---ccccchhhhhhHHHHHHHHHHHH
Q 011707 160 DICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMI-------------------D---RSRAVFTQHNNVIGTLNVLFAMK 217 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~-------------------~---~~~~~~~~~~Nv~g~~~ll~~a~ 217 (479)
..+.+++++ +.|+||+.++......... + +....+ ..-|+.-.+.+++..+
T Consensus 67 ----~td~~eaL~--dad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~-~~rn~~i~~~i~~~i~ 139 (171)
T d1obba1 67 ----TMNLDDVII--DADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFS-NYNQLKYFVDIARKIE 139 (171)
T ss_dssp ----ESCHHHHHT--TCSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSS-CHHHHHHHHHHHHHHH
T ss_pred ----eCChhhccc--CCCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceee-ecchHHHHHHHHHHHH
Confidence 223667777 8999999987532111000 0 000000 1237788888898888
Q ss_pred HcCCcceEEEee
Q 011707 218 EFRQECHLVKLG 229 (479)
Q Consensus 218 ~~g~~~~~V~~S 229 (479)
+...+..|+.+|
T Consensus 140 ~~~p~a~~i~~T 151 (171)
T d1obba1 140 KLSPKAWYLQAA 151 (171)
T ss_dssp HHCTTCEEEECS
T ss_pred HHCcCeEEEEEC
Confidence 888776676665
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=91.93 E-value=0.2 Score=41.10 Aligned_cols=35 Identities=23% Similarity=0.285 Sum_probs=31.4
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
.-+|+|.|| |-.|.+=++...+.|.+|+++|.+..
T Consensus 29 pa~VvViGa-GvaG~~Aa~~A~~lGA~V~v~D~~~~ 63 (183)
T d1l7da1 29 PARVLVFGV-GVAGLQAIATAKRLGAVVMATDVRAA 63 (183)
T ss_dssp CCEEEEECC-SHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred CcEEEEEcC-cHHHHHHHHHHHHcCCEEEEEeccHH
Confidence 348999998 99999999999999999999998654
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=91.92 E-value=0.33 Score=41.91 Aligned_cols=36 Identities=33% Similarity=0.354 Sum_probs=32.0
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.+++++|+|-|- |-+|.++++.|.+.|.+|++++..
T Consensus 28 ~l~g~~v~IqGf-GnVG~~~a~~L~~~Gakvv~vsD~ 63 (242)
T d1v9la1 28 GIEGKTVAIQGM-GNVGRWTAYWLEKMGAKVIAVSDI 63 (242)
T ss_dssp CCTTCEEEEECC-SHHHHHHHHHHHTTTCEEEEEECS
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEeecc
Confidence 467999999985 999999999999999999987654
|
| >d1q0qa2 c.2.1.3 (A:1-125,A:275-300) 1-deoxy-D-xylulose-5-phosphate reductoisomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: 1-deoxy-D-xylulose-5-phosphate reductoisomerase species: Escherichia coli [TaxId: 562]
Probab=91.90 E-value=0.18 Score=40.07 Aligned_cols=33 Identities=21% Similarity=0.355 Sum_probs=27.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhC--CCeEEEEec
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNK--GYEVAIVDS 118 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~--G~~V~~~dr 118 (479)
||+|.|.|+||-||...+.-+.+. .++|.++.-
T Consensus 1 MK~I~IlGsTGSIG~~tL~Vi~~~~d~f~v~~Lsa 35 (151)
T d1q0qa2 1 MKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVA 35 (151)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHHCTTTEEEEEEEE
T ss_pred CCeEEEEcCCcHHHHHHHHHHHhCCCCcEEEEEEe
Confidence 578999999999999999988876 467877653
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=91.84 E-value=0.38 Score=38.92 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=62.7
Q ss_pred CcEEEEEcCCchhhHH-HHHHHHhC-----CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEc
Q 011707 86 AKRVMIIGGDGYCGWA-TALHLSNK-----GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIG 159 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~-l~~~Ll~~-----G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~ 159 (479)
..+|.|.|| |.+|.. ++..|+.. +.+|+.+|..+.... ...+.++......+........
T Consensus 3 ~~KI~iIGa-Gsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 68 (167)
T d1u8xx1 3 SFSIVIAGG-GSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQD-------------RIAGACDVFIREKAPDIEFAAT 68 (167)
T ss_dssp CEEEEEECT-TSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHH-------------HHHHHHHHHHHHHCTTSEEEEE
T ss_pred CceEEEECC-ChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHH-------------HHHHHHHHHHHHhCCCcceEec
Confidence 457999998 556654 44555543 237899987654211 0111122222222223333222
Q ss_pred ccCChHHHHHHhhhcCCCEEEEcccccCcccccccccccchhhh--------------------hhHHHHHHHHHHHHHc
Q 011707 160 DICDFEFLSESFKSFEPDAVVHFGEQRSAPYSMIDRSRAVFTQH--------------------NNVIGTLNVLFAMKEF 219 (479)
Q Consensus 160 Dl~d~~~~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~~~~~~--------------------~Nv~g~~~ll~~a~~~ 219 (479)
.+.+++++ +.|+||..||....+....+ ..+. -|+.-.+.+++..++.
T Consensus 69 -----~d~~eal~--~AD~Vvitag~~~~~g~~rd-----~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~ 136 (167)
T d1u8xx1 69 -----TDPEEAFT--DVDFVMAHIRVGKYAMRALD-----EQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKY 136 (167)
T ss_dssp -----SCHHHHHS--SCSEEEECCCTTHHHHHHHH-----HHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----CChhhccC--CCCEEEECCCcCCCCceeHH-----HhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhh
Confidence 13567777 89999999986432211111 1111 2345556667777777
Q ss_pred CCcceEEEee
Q 011707 220 RQECHLVKLG 229 (479)
Q Consensus 220 g~~~~~V~~S 229 (479)
..+..|+.+|
T Consensus 137 ~P~A~li~~T 146 (167)
T d1u8xx1 137 SPDAWMLNYS 146 (167)
T ss_dssp CTTCEEEECC
T ss_pred CCCeEEEEeC
Confidence 7776677665
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=91.68 E-value=0.088 Score=47.48 Aligned_cols=35 Identities=29% Similarity=0.554 Sum_probs=31.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
+.|+|+|+|| |..|-..|..|.++|++|+++++..
T Consensus 29 ~pkkV~IIGa-G~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVGA-GMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEECC-BHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4579999998 9999999999999999999998653
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=91.68 E-value=0.067 Score=40.06 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=31.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+++|+|+|.|+ |--|.-++..|++.+.+|+.+.++.
T Consensus 29 ~f~gK~VlVVG~-g~Sa~dia~~l~~~ak~v~~~~~r~ 65 (107)
T d2gv8a2 29 LFVGESVLVVGG-ASSANDLVRHLTPVAKHPIYQSLLG 65 (107)
T ss_dssp GGTTCCEEEECS-SHHHHHHHHHHTTTSCSSEEEECTT
T ss_pred hcCCCeEEEECC-CCCHHHHHHHHHHhcCEEEEEEecC
Confidence 467999999997 9999999999999888877666644
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.66 E-value=0.23 Score=40.37 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.+.+|+|+|+ |.+|...+..+...|. +|+++++..
T Consensus 28 ~g~~VlI~G~-Gg~g~~~~~~~~~~g~~~Vi~~~~~~ 63 (175)
T d1cdoa2 28 PGSTCAVFGL-GAVGLAAVMGCHSAGAKRIIAVDLNP 63 (175)
T ss_dssp TTCEEEEECC-SHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred CCCEEEEEec-CCccchHHHHHHHHhhchheeecchH
Confidence 4779999987 6688888887887765 688877654
|
| >d1p9oa_ c.72.3.1 (A:) Phosphopantothenoylcysteine synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Ribokinase-like superfamily: CoaB-like family: CoaB-like domain: Phosphopantothenoylcysteine synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.33 Score=43.21 Aligned_cols=32 Identities=22% Similarity=0.177 Sum_probs=28.0
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
|++=--.||-.|.+|++.|+++|++|+.+.+.
T Consensus 38 R~ItN~SSGk~G~alA~~~~~~Ga~V~li~g~ 69 (290)
T d1p9oa_ 38 RFLDNFSSGRRGATSAEAFLAAGYGVLFLYRA 69 (290)
T ss_dssp EEEEECCCCHHHHHHHHHHHHTTCEEEEEEET
T ss_pred eEeCCCCchHHHHHHHHHHHHcCCEEEEEecC
Confidence 56666789999999999999999999998654
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=91.48 E-value=0.67 Score=37.40 Aligned_cols=33 Identities=21% Similarity=0.280 Sum_probs=26.1
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEec
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDS 118 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr 118 (479)
+..||.|.|. |.+|+.+++.|.+. +.+++++..
T Consensus 2 ~kirvgiiG~-G~ig~~~~~~l~~~~~~elvav~~ 35 (170)
T d1f06a1 2 TNIRVAIVGY-GNLGRSVEKLIAKQPDMDLVGIFS 35 (170)
T ss_dssp CCEEEEEECC-SHHHHHHHHHHTTCSSEEEEEEEE
T ss_pred CcceEEEECC-hHHHHHHHHHHHhCCCcEEEEEEe
Confidence 4568999985 99999999999876 677776543
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.39 E-value=0.071 Score=44.73 Aligned_cols=34 Identities=32% Similarity=0.548 Sum_probs=28.5
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRR 122 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~ 122 (479)
|+|.|.| .||+|..++..| +.|++|+++|.....
T Consensus 1 MkI~ViG-lG~vGl~~a~~~-a~g~~V~g~Din~~~ 34 (196)
T d1dlja2 1 MKIAVAG-SGYVGLSLGVLL-SLQNEVTIVDILPSK 34 (196)
T ss_dssp CEEEEEC-CSHHHHHHHHHH-TTTSEEEEECSCHHH
T ss_pred CEEEEEC-CChhHHHHHHHH-HCCCcEEEEECCHHH
Confidence 6799997 699999999766 579999999987653
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.38 E-value=0.15 Score=41.02 Aligned_cols=37 Identities=24% Similarity=0.168 Sum_probs=32.9
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.||+++|.| .|.||+.+++.|...|.+|++.+..+
T Consensus 21 ~l~Gk~v~V~G-yG~iG~g~A~~~rg~G~~V~v~e~dp 57 (163)
T d1li4a1 21 MIAGKVAVVAG-YGDVGKGCAQALRGFGARVIITEIDP 57 (163)
T ss_dssp CCTTCEEEEEC-CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred eecCCEEEEec-cccccHHHHHHHHhCCCeeEeeeccc
Confidence 45799999997 59999999999999999999988643
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=91.19 E-value=0.077 Score=43.72 Aligned_cols=34 Identities=29% Similarity=0.490 Sum_probs=30.2
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
|+|-|+|- |-+|..|+++|++.|++|++.||...
T Consensus 2 MkIGvIGl-G~MG~~ma~~L~~~G~~V~~~dr~~~ 35 (178)
T d1pgja2 2 MDVGVVGL-GVMGANLALNIAEKGFKVAVFNRTYS 35 (178)
T ss_dssp BSEEEECC-SHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred CEEEEEee-hHHHHHHHHHHHHCCCeEEEEECCHH
Confidence 57889975 99999999999999999999998654
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.77 E-value=0.088 Score=47.38 Aligned_cols=35 Identities=20% Similarity=0.284 Sum_probs=31.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
|..|+|+|| |.-|..+|++|++.|++|.++.+...
T Consensus 1 M~dv~IIGa-G~sGl~~A~~L~~~g~~V~iiEk~~~ 35 (298)
T d1i8ta1 1 MYDYIIVGS-GLFGAVCANELKKLNKKVLVIEKRNH 35 (298)
T ss_dssp CEEEEEECC-SHHHHHHHHHHGGGTCCEEEECSSSS
T ss_pred CccEEEECC-cHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 357999998 99999999999999999999987653
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=90.74 E-value=0.097 Score=42.68 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=30.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
++++|||.|+ |+.|++++..|.+.|. +|+++.|..
T Consensus 16 ~~~~vlIlGa-GGaarai~~aL~~~g~~~I~I~nR~~ 51 (167)
T d1npya1 16 KNAKVIVHGS-GGMAKAVVAAFKNSGFEKLKIYARNV 51 (167)
T ss_dssp TTSCEEEECS-STTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred CCCeEEEECC-CHHHHHHHHHHHHCCCCEEEEecccH
Confidence 5789999997 9999999999999996 788887754
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=90.73 E-value=0.46 Score=36.27 Aligned_cols=76 Identities=21% Similarity=0.285 Sum_probs=52.9
Q ss_pred CCcEEEEEcCC----------chhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCce
Q 011707 85 KAKRVMIIGGD----------GYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNI 154 (479)
Q Consensus 85 ~~~~vLVtGat----------G~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 154 (479)
..|+|||.|+. -|.+.+.++.|.+.|++++.+..++..-... + .-.
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~TVstd-------------------~-----d~a 61 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPATIMTD-------------------P-----EMA 61 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTCGGGC-------------------G-----GGS
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHhhhcC-------------------h-----hhc
Confidence 45899999983 3678999999999999999987654321110 0 011
Q ss_pred eEEEcccCChHHHHHHhhhcCCCEEEEccc
Q 011707 155 ELYIGDICDFEFLSESFKSFEPDAVVHFGE 184 (479)
Q Consensus 155 ~~v~~Dl~d~~~~~~~~~~~~~D~Vih~A~ 184 (479)
.-+...-...+.+.++++..++|.|+-..|
T Consensus 62 D~lYfePlt~e~v~~Ii~~E~pd~il~~~G 91 (127)
T d1a9xa3 62 DATYIEPIHWEVVRKIIEKERPDAVLPTMG 91 (127)
T ss_dssp SEEECSCCCHHHHHHHHHHHCCSEEECSSS
T ss_pred ceeeeecCCHHHHHHHHHHhCcCCeEEEee
Confidence 222344456788999998879999986554
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=90.62 E-value=0.086 Score=46.65 Aligned_cols=33 Identities=33% Similarity=0.641 Sum_probs=29.9
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
|+|+|+|| |.-|...+.+|.++|++|+++.+..
T Consensus 1 m~V~IIGa-G~aGL~aA~~L~~~G~~V~vlE~~~ 33 (347)
T d2ivda1 1 MNVAVVGG-GISGLAVAHHLRSRGTDAVLLESSA 33 (347)
T ss_dssp CCEEEECC-BHHHHHHHHHHHTTTCCEEEECSSS
T ss_pred CeEEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 57999998 9999999999999999999997653
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=90.56 E-value=1.1 Score=31.83 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=27.4
Q ss_pred CcEEEEEcCCchhhH-HHHHHHHhCCCeEEEEeccc
Q 011707 86 AKRVMIIGGDGYCGW-ATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 86 ~~~vLVtGatG~iG~-~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.|+|.++|- |++|. .||+.|.++|++|.+-|+..
T Consensus 1 ~~~ihfiGI-gG~GMs~LA~~L~~~G~~VsGSD~~~ 35 (89)
T d1j6ua1 1 HMKIHFVGI-GGIGMSAVALHEFSNGNDVYGSNIEE 35 (89)
T ss_dssp CCEEEEETT-TSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred CcEEEEEeE-CHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 367888876 55665 78999999999999999764
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=90.47 E-value=0.11 Score=41.59 Aligned_cols=34 Identities=29% Similarity=0.409 Sum_probs=29.7
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC-CeEEEEecccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG-YEVAIVDSLIR 121 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G-~~V~~~dr~~~ 121 (479)
|+|.++|+ |-+|.++++.|++.| ++|++.+|...
T Consensus 1 MkI~fIG~-G~MG~ai~~~l~~~~~~~i~v~~r~~~ 35 (152)
T d1yqga2 1 MNVYFLGG-GNMAAAVAGGLVKQGGYRIYIANRGAE 35 (152)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHCSCEEEEECSSHH
T ss_pred CEEEEEcC-cHHHHHHHHHHHHCCCCcEEEEeCChh
Confidence 57999987 999999999999987 89999888643
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=90.37 E-value=0.11 Score=42.52 Aligned_cols=35 Identities=29% Similarity=0.334 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+++|+|+|| |++|-.++..|.+.|.+|.++.+..
T Consensus 2 ~~~~VvIIGg-G~~G~e~A~~l~~~g~~v~v~~~~~ 36 (185)
T d1q1ra1 2 ANDNVVIVGT-GLAGVEVAFGLRASGWEGNIRLVGD 36 (185)
T ss_dssp CSCEEEEECC-SHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred CCCCEEEECC-cHHHHHHHHHHHHcCCceEEEEecC
Confidence 3678999998 9999999999999999877665443
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=90.35 E-value=0.68 Score=34.87 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCc----------hhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCce
Q 011707 85 KAKRVMIIGGDG----------YCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNI 154 (479)
Q Consensus 85 ~~~~vLVtGatG----------~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 154 (479)
..|+|||.|+.. |.+.+.++.|.+.|++++.+..++..-... ..-.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeTVstd------------------------~d~a 58 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTD------------------------YDTS 58 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTSSTTS------------------------TTSS
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhhhhcC------------------------hhhc
Confidence 357999999843 788999999999999999987654321100 0111
Q ss_pred eEEEcccCChHHHHHHhhhcCCCEEEEccc
Q 011707 155 ELYIGDICDFEFLSESFKSFEPDAVVHFGE 184 (479)
Q Consensus 155 ~~v~~Dl~d~~~~~~~~~~~~~D~Vih~A~ 184 (479)
.-+...-...+.+.++++..++|.|+-..|
T Consensus 59 D~lYfeplt~e~v~~Ii~~E~p~~ii~~~G 88 (121)
T d1a9xa4 59 DRLYFEPVTLEDVLEIVRIEKPKGVIVQYG 88 (121)
T ss_dssp SEEECCCCSHHHHHHHHHHHCCSEEECSSS
T ss_pred CceEEccCCHHHHHHHHHHhCCCEEEeehh
Confidence 222333345688888888778998885544
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=90.06 E-value=0.32 Score=39.89 Aligned_cols=89 Identities=15% Similarity=0.057 Sum_probs=46.9
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCCh
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~ 164 (479)
.+.+||..|+. .| ..+..|+++|++|+++|.........+........ ................++.+|..+.
T Consensus 20 ~~~rvLd~GCG--~G-~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~d~~~l 92 (201)
T d1pjza_ 20 PGARVLVPLCG--KS-QDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPH----ITSQGDFKVYAAPGIEIWCGDFFAL 92 (201)
T ss_dssp TTCEEEETTTC--CS-HHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSE----EEEETTEEEEECSSSEEEEECCSSS
T ss_pred CCCEEEEecCc--CC-HHHHHHHHcCCceEeecccHHHHHHHHHHhccccc----hhhhhhhhhccccccceeccccccc
Confidence 57899999963 33 35567788899999999865432110000000000 0000001111234567888888775
Q ss_pred HHHHHHhhhcCCCEEEEccc
Q 011707 165 EFLSESFKSFEPDAVVHFGE 184 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~ 184 (479)
..... . .+|+|+....
T Consensus 93 ~~~~~--~--~~D~i~~~~~ 108 (201)
T d1pjza_ 93 TARDI--G--HCAAFYDRAA 108 (201)
T ss_dssp THHHH--H--SEEEEEEESC
T ss_pred ccccc--c--ceeEEEEEee
Confidence 43221 1 5788876544
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=89.71 E-value=0.13 Score=45.46 Aligned_cols=32 Identities=28% Similarity=0.585 Sum_probs=29.4
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
-|+|+|| |..|..+|.+|+++|++|+++++..
T Consensus 5 DvvIIGa-Gi~Gls~A~~La~~G~~V~viE~~~ 36 (281)
T d2gf3a1 5 DVIVVGA-GSMGMAAGYQLAKQGVKTLLVDAFD 36 (281)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4899998 9999999999999999999998754
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.70 E-value=0.098 Score=46.50 Aligned_cols=32 Identities=28% Similarity=0.419 Sum_probs=29.8
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
+|+|+|| |-.|..++..|.+.|++|+++++.+
T Consensus 4 ~V~IvGa-Gp~Gl~~A~~L~~~G~~v~vlE~~~ 35 (292)
T d1k0ia1 4 QVAIIGA-GPSGLLLGQLLHKAGIDNVILERQT 35 (292)
T ss_dssp SEEEECC-SHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 6999998 9999999999999999999998864
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=89.54 E-value=0.15 Score=45.74 Aligned_cols=36 Identities=19% Similarity=0.459 Sum_probs=31.8
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
.+.-.|+|+|| |+.|..++.+|.+.|.+|+++++..
T Consensus 5 ~~~~dV~IIGA-G~sGl~~a~~L~~~G~~v~i~Ek~~ 40 (298)
T d1w4xa1 5 PEEVDVLVVGA-GFSGLYALYRLRELGRSVHVIETAG 40 (298)
T ss_dssp CSEEEEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCCCCEEEECc-cHHHHHHHHHHHhCCCCEEEEEcCC
Confidence 34567999998 9999999999999999999998754
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.36 E-value=0.14 Score=43.64 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=28.6
Q ss_pred EEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
|+|+|| |.-|...|..|+++|++|.++.+..
T Consensus 8 viViGa-G~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 8 VIVLGT-GITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp EEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred EEEECc-CHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 899997 9999999999999999999998754
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=89.18 E-value=0.19 Score=38.00 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=27.0
Q ss_pred CcEEEEEcCCchhhHHHHHHHHh---CCCeEEEEeccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSN---KGYEVAIVDSLI 120 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~---~G~~V~~~dr~~ 120 (479)
.++++|.|| |++|-.++..|.+ .|.+|+++.+..
T Consensus 20 p~~v~ivGg-G~ig~E~A~~l~~l~~~~~~Vtli~~~~ 56 (117)
T d1aoga2 20 PRRVLTVGG-GFISVEFAGIFNAYKPKDGQVTLCYRGE 56 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHCCTTCEEEEEESSS
T ss_pred CCeEEEECC-cHHHHHHHHHhhhcccCCcEEEEEeccc
Confidence 478999998 9999999965554 456899987643
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.98 E-value=0.18 Score=41.39 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccc
Q 011707 84 SKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIR 121 (479)
Q Consensus 84 ~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~ 121 (479)
.++|+|||.|+ |+.++.++..|.+.| +|+++.|...
T Consensus 16 ~~~k~vlIlGa-GG~arai~~aL~~~~-~i~I~nR~~~ 51 (177)
T d1nvta1 16 VKDKNIVIYGA-GGAARAVAFELAKDN-NIIIANRTVE 51 (177)
T ss_dssp CCSCEEEEECC-SHHHHHHHHHHTSSS-EEEEECSSHH
T ss_pred cCCCEEEEECC-cHHHHHHHHHHcccc-ceeeehhhhh
Confidence 57899999987 889999999997777 8988887543
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.91 E-value=0.95 Score=38.77 Aligned_cols=36 Identities=31% Similarity=0.388 Sum_probs=30.6
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhC-CCeEEEEecc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNK-GYEVAIVDSL 119 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~-G~~V~~~dr~ 119 (479)
++++++|+|-|- |-+|.++++.|.++ |..|+++...
T Consensus 29 ~l~g~~v~IqGf-GnVG~~~a~~L~~~~G~kvv~vsD~ 65 (239)
T d1gtma1 29 TLKGKTIAIQGY-GNAGYYLAKIMSEDFGMKVVAVSDS 65 (239)
T ss_dssp CSTTCEEEEECC-SHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred CcCCCEEEEECC-CHHHHHHHHHHHHhcCcceeecccc
Confidence 468999999997 99999999999865 9998877543
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=88.84 E-value=0.23 Score=37.45 Aligned_cols=34 Identities=26% Similarity=0.356 Sum_probs=27.9
Q ss_pred CcEEEEEcCCchhhHHHHHHHHh---CCCeEEEEeccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSN---KGYEVAIVDSLI 120 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~---~G~~V~~~dr~~ 120 (479)
.++++|+|| |++|-.++..|.+ .|.+|+++.+..
T Consensus 18 p~~v~IiGg-G~ig~E~A~~l~~~~~~g~~Vtli~~~~ 54 (117)
T d1feca2 18 PKRALCVGG-GYISIEFAGIFNAYKARGGQVDLAYRGD 54 (117)
T ss_dssp CSEEEEECS-SHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred CCeEEEECC-ChHHHHHHHHhHhhcccccccceecccc
Confidence 478999998 9999999976554 488999988754
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=88.79 E-value=0.2 Score=45.55 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCC--CeEEEEecccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLIR 121 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~~ 121 (479)
.+|+|+|+|| |.-|...+..|+++| ++|+++.+...
T Consensus 3 ~~KrVaIIGa-G~sGl~~A~~L~~~~~~~~v~vfEk~~~ 40 (335)
T d2gv8a1 3 TIRKIAIIGA-GPSGLVTAKALLAEKAFDQVTLFERRGS 40 (335)
T ss_dssp SCCEEEEECC-SHHHHHHHHHHHTTTCCSEEEEECSSSS
T ss_pred CCCeEEEECc-CHHHHHHHHHHHHhCCCCCEEEEECCCC
Confidence 4689999998 999999999999886 69999987653
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.37 E-value=0.25 Score=44.27 Aligned_cols=34 Identities=35% Similarity=0.621 Sum_probs=30.3
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
+.++|+|+|| |.-|-.-+.+|.++|++|+++-..
T Consensus 4 ~~~kViVIGa-G~aGL~aA~~L~~~G~~V~VlEa~ 37 (449)
T d2dw4a2 4 KTGKVIIIGS-GVSGLAAARQLQSFGMDVTLLEAR 37 (449)
T ss_dssp CCCEEEEECC-BHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEECC-CHHHHHHHHHHHhCCCCEEEEeCC
Confidence 4568999998 999999999999999999998654
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.21 E-value=1.6 Score=35.10 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=35.7
Q ss_pred HHHHhhhcCCCEEEEcccccCccccccccccc---------------chhhhhhHHHHHHHHHHHHHcCCcceEEEee
Q 011707 167 LSESFKSFEPDAVVHFGEQRSAPYSMIDRSRA---------------VFTQHNNVIGTLNVLFAMKEFRQECHLVKLG 229 (479)
Q Consensus 167 ~~~~~~~~~~D~Vih~A~~~~~~~~~~~~~~~---------------~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~S 229 (479)
..++++ +.|+||.+|+....+....+..-. .....-|+.-.+.+++..++...+..|+.+|
T Consensus 71 ~~~al~--gaDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vt 146 (169)
T d1s6ya1 71 RRRALD--GADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFT 146 (169)
T ss_dssp HHHHHT--TCSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred chhhcC--CCCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeC
Confidence 455667 899999999864321111110000 0011247777788888888888885666555
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=88.10 E-value=0.17 Score=45.23 Aligned_cols=32 Identities=31% Similarity=0.574 Sum_probs=28.7
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
+|+|+|| |.+|..+|.+|+++|. +|+++++..
T Consensus 3 dViIIGa-Gi~G~s~A~~La~~G~~~V~liE~~~ 35 (305)
T d1pj5a2 3 RIVIIGA-GIVGTNLADELVTRGWNNITVLDQGP 35 (305)
T ss_dssp CEEEECC-SHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred CEEEECc-CHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence 6999998 9999999999999996 699998753
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.75 E-value=0.27 Score=38.38 Aligned_cols=34 Identities=35% Similarity=0.427 Sum_probs=28.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHh----CCCeEEEEeccc
Q 011707 86 AKRVMIIGGDGYCGWATALHLSN----KGYEVAIVDSLI 120 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~----~G~~V~~~dr~~ 120 (479)
.++++|.|| |++|-.++..|.+ .|.+|+.+.+..
T Consensus 37 ~k~i~IvGg-G~~G~E~A~~l~~~~~~~g~~Vt~i~~~~ 74 (137)
T d1m6ia2 37 VKSITIIGG-GFLGSELACALGRKARALGTEVIQLFPEK 74 (137)
T ss_dssp CSEEEEECC-SHHHHHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCEEEEECC-CHHHHHHHHHHHHHHHhcCCEEEEecccc
Confidence 578999998 9999999998864 489999987644
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.75 E-value=1.2 Score=38.08 Aligned_cols=36 Identities=31% Similarity=0.319 Sum_probs=30.3
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHh-CCCeEEEEecc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSN-KGYEVAIVDSL 119 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~-~G~~V~~~dr~ 119 (479)
.+++++|.|-| .|-+|.++++.|.+ .|..|+.++..
T Consensus 28 ~l~g~~vaIqG-~GnVG~~~a~~L~~e~Ga~vv~vsd~ 64 (234)
T d1b26a1 28 DPKKATVAVQG-FGNVGQFAALLISQELGSKVVAVSDS 64 (234)
T ss_dssp CTTTCEEEEEC-CSHHHHHHHHHHHHHHCCEEEEEEET
T ss_pred CcCCCEEEEEC-CCHHHHHHHHHHHHhcCCceEEeecC
Confidence 45789999998 59999999999976 59999887643
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=87.42 E-value=0.26 Score=40.96 Aligned_cols=33 Identities=18% Similarity=0.239 Sum_probs=28.0
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCC--CeEEEEeccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKG--YEVAIVDSLI 120 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G--~~V~~~dr~~ 120 (479)
|||+|.|| |++|-.++..|.+.+ .+|+++++..
T Consensus 1 ~KVvIIGg-G~~G~e~A~~l~~~~~~~~V~v~~~~~ 35 (198)
T d1nhpa1 1 MKVIVLGS-SHGGYEAVEELLNLHPDAEIQWYEKGD 35 (198)
T ss_dssp CEEEEECS-SHHHHHHHHHHHHHCTTSEEEEEESSS
T ss_pred CEEEEECC-cHHHHHHHHHHHhcCCCCeEEEEeCCC
Confidence 68999998 999999999998874 5788887643
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.42 E-value=0.044 Score=47.25 Aligned_cols=28 Identities=36% Similarity=0.501 Sum_probs=24.9
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEE
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAI 115 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~ 115 (479)
|+|+|+|| |.+|...|.+|+++|++|++
T Consensus 1 mkV~VIGa-Gi~GlstA~~L~~~G~~v~v 28 (246)
T d1kifa1 1 MRVVVIGA-GVIGLSTALCIHERYHSVLQ 28 (246)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHHHTTTSS
T ss_pred CEEEEECc-hHHHHHHHHHHHHCCCCceE
Confidence 58999998 99999999999999986543
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=87.34 E-value=0.74 Score=35.68 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=28.5
Q ss_pred CCcEEEEEcCC---chhhHHHHHHHHhCCCeEEEEe
Q 011707 85 KAKRVMIIGGD---GYCGWATALHLSNKGYEVAIVD 117 (479)
Q Consensus 85 ~~~~vLVtGat---G~iG~~l~~~Ll~~G~~V~~~d 117 (479)
+.|+|.|+||| +-.|..+++.|.+.||+++.+.
T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~ 47 (136)
T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVN 47 (136)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEEC
T ss_pred CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEE
Confidence 35789999998 5689999999999999998764
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=87.07 E-value=0.28 Score=39.28 Aligned_cols=31 Identities=39% Similarity=0.659 Sum_probs=26.8
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
||+|+|| |++|-.++..|. ++.+|+++++..
T Consensus 2 rVvIIGg-G~~G~e~A~~l~-~~~~Vtvv~~~~ 32 (167)
T d1xhca1 2 KVVIVGN-GPGGFELAKQLS-QTYEVTVIDKEP 32 (167)
T ss_dssp EEEEECC-SHHHHHHHHHHT-TTSEEEEECSSS
T ss_pred eEEEECC-cHHHHHHHHHHH-cCCCEEEEeccc
Confidence 7999998 999999999985 578999998754
|
| >d2blna2 c.65.1.1 (A:1-203) Polymyxin resistance protein ArnA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Formyltransferase superfamily: Formyltransferase family: Formyltransferase domain: Polymyxin resistance protein ArnA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.04 E-value=1.1 Score=37.18 Aligned_cols=83 Identities=14% Similarity=0.183 Sum_probs=47.8
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEE-cccCChH
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYI-GDICDFE 165 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~-~Dl~d~~ 165 (479)
|+|+|.|. +..|..+++.|++.|++|.++...+..... ..... . +..+... .++.++. .++.+.+
T Consensus 1 Mkiv~~~~-~~~g~~~l~~L~~~g~~I~~Vvt~~~~~~~----~~~~~---~----~~~~a~~--~~i~~~~~~~~~~~~ 66 (203)
T d2blna2 1 MKTVVFAY-HDMGCLGIEALLAAGYEISAIFTHTDNPGE----KAFYG---S----VARLAAE--RGIPVYAPDNVNHPL 66 (203)
T ss_dssp CEEEEEEC-HHHHHHHHHHHHHTTCEEEEEECCCC----------CCC---C----HHHHHHH--HTCCEECCSCCCSHH
T ss_pred CeEEEEec-CHHHHHHHHHHHHCCCCEEEEEcCCCCCCc----ccccC---H----HHHHHHH--cCCcceecccccchh
Confidence 57888866 668999999999999999877643321100 00000 1 1111111 2454444 4566655
Q ss_pred HHHHHhhhcCCCEEEEccc
Q 011707 166 FLSESFKSFEPDAVVHFGE 184 (479)
Q Consensus 166 ~~~~~~~~~~~D~Vih~A~ 184 (479)
.+ +.++...+|++|....
T Consensus 67 ~~-~~i~~~~~Dlii~~g~ 84 (203)
T d2blna2 67 WV-ERIAQLSPDVIFSFYY 84 (203)
T ss_dssp HH-HHHHHTCCSEEEEESC
T ss_pred hh-hhhhhhcccceeeeec
Confidence 44 4555568999887753
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=85.68 E-value=1.5 Score=34.49 Aligned_cols=30 Identities=27% Similarity=0.337 Sum_probs=24.6
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
||-++|- |.+|..+++.|++.|+.|+ .+|.
T Consensus 2 kIg~IGl-G~MG~~ma~~L~~~g~~~~-~~~~ 31 (156)
T d2cvza2 2 KVAFIGL-GAMGYPMAGHLARRFPTLV-WNRT 31 (156)
T ss_dssp CEEEECC-STTHHHHHHHHHTTSCEEE-ECSS
T ss_pred eEEEEeH-HHHHHHHHHHHHhCCCEEE-EeCC
Confidence 5788886 9999999999999998775 4443
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=85.49 E-value=1 Score=38.94 Aligned_cols=35 Identities=23% Similarity=0.378 Sum_probs=31.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.+++++|.|-|- |-+|.++++.|.+.|.+|+++..
T Consensus 33 ~l~g~~v~IQGf-GnVG~~~a~~L~e~GakvvavsD 67 (255)
T d1bgva1 33 TLVGKTVALAGF-GNVAWGAAKKLAELGAKAVTLSG 67 (255)
T ss_dssp CSTTCEEEECCS-SHHHHHHHHHHHHHTCEEEEEEE
T ss_pred CCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEEec
Confidence 467899999995 99999999999999999988754
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=85.24 E-value=0.47 Score=41.18 Aligned_cols=33 Identities=30% Similarity=0.512 Sum_probs=29.3
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
.+|+|+|| |..|..++..|.+.|. +|+++.+..
T Consensus 2 ~~V~IvGa-G~aGl~~A~~L~~~Gi~~V~V~Er~~ 35 (288)
T d3c96a1 2 IDILIAGA-GIGGLSCALALHQAGIGKVTLLESSS 35 (288)
T ss_dssp CEEEEECC-SHHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CEEEEECc-CHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 57999998 9999999999999995 899888754
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=85.09 E-value=0.79 Score=36.33 Aligned_cols=35 Identities=20% Similarity=0.164 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCe-EEEEeccc
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYE-VAIVDSLI 120 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~-V~~~dr~~ 120 (479)
-+++|+|+|| |.+|.-.+..|++.|.+ |+++.|+.
T Consensus 44 ~~~kVvVIGG-GdtA~D~A~~a~r~GA~~V~vi~rr~ 79 (153)
T d1gtea3 44 IRGAVIVLGA-GDTAFDCATSALRCGARRVFLVFRKG 79 (153)
T ss_dssp CCSEEEEECS-SHHHHHHHHHHHHTTCSEEEEECSSC
T ss_pred CCCEEEEECC-ChhHHHHHHHHHHcCCcceeEEEeCC
Confidence 4678999998 99999999999999975 77776643
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=85.05 E-value=0.66 Score=37.03 Aligned_cols=36 Identities=28% Similarity=0.214 Sum_probs=32.2
Q ss_pred CCCCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 83 PSKAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 83 ~~~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
.+.||+++|.|= |.+|+-+++.|...|.+|+++...
T Consensus 20 ~laGk~vvV~GY-G~vGrG~A~~~rg~Ga~V~V~E~D 55 (163)
T d1v8ba1 20 LISGKIVVICGY-GDVGKGCASSMKGLGARVYITEID 55 (163)
T ss_dssp CCTTSEEEEECC-SHHHHHHHHHHHHHTCEEEEECSC
T ss_pred eecCCEEEEecc-cccchhHHHHHHhCCCEEEEEecC
Confidence 457999999986 999999999999999999998653
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=84.48 E-value=0.37 Score=41.21 Aligned_cols=32 Identities=31% Similarity=0.607 Sum_probs=28.6
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCC-eEEEEeccc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGY-EVAIVDSLI 120 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~-~V~~~dr~~ 120 (479)
+|+|+|| |.-|...|..|.++|+ +|+++.+..
T Consensus 2 ~V~IIGa-G~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGA-GMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECC-BHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECC-cHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 6999998 9999999999999996 799998754
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.68 E-value=0.45 Score=42.77 Aligned_cols=31 Identities=32% Similarity=0.616 Sum_probs=28.5
Q ss_pred EEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 89 VMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 89 vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
|+|+|| |..|-..|.+|.++|++|+++.+..
T Consensus 2 ViVIGa-G~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGG-GISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECC-BHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECC-CHHHHHHHHHHHhCCCCEEEEecCC
Confidence 789998 9999999999999999999998754
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.25 E-value=1.1 Score=37.97 Aligned_cols=95 Identities=14% Similarity=-0.022 Sum_probs=50.8
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhh--hhhhcccCCCceeEEEcccC
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDR--LRCWKSLTGKNIELYIGDIC 162 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~v~~Dl~ 162 (479)
.+.+||..|+.- | ..+..|++.|++|+++|..+............. +....... ........+.+++++.+|+.
T Consensus 45 ~~~rvLd~GCG~--G-~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 45 SGLRVFFPLCGK--A-VEMKWFADRGHSVVGVEISELGIQEFFTEQNLS-YSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp CSCEEEETTCTT--C-THHHHHHHTTCEEEEECSCHHHHHHHHHHTTCC-EEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCEEEEeCCCC--c-HHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhcc-ccccchhcccccceeeecCCcEEEEEcchh
Confidence 567999999733 4 457778889999999998764321110000000 00000000 00111123457889999976
Q ss_pred ChHHHHHHhhhcCCCEEEEcccccC
Q 011707 163 DFEFLSESFKSFEPDAVVHFGEQRS 187 (479)
Q Consensus 163 d~~~~~~~~~~~~~D~Vih~A~~~~ 187 (479)
+... .....+|+|+..+...+
T Consensus 121 ~l~~----~~~~~fd~i~~~~~l~~ 141 (229)
T d2bzga1 121 DLPR----TNIGKFDMIWDRGALVA 141 (229)
T ss_dssp GGGG----SCCCCEEEEEESSSTTT
T ss_pred hccc----cccCceeEEEEEEEEEe
Confidence 5431 11115788888776544
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=82.63 E-value=0.52 Score=40.34 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=29.2
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEeccc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSLI 120 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~ 120 (479)
-|+|+|| |..|...+..|.++|++|+++++..
T Consensus 4 DViIIGa-G~aGl~aA~~la~~G~~V~liEk~~ 35 (251)
T d2i0za1 4 DVIVIGG-GPSGLMAAIGAAEEGANVLLLDKGN 35 (251)
T ss_dssp SEEEECC-SHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CEEEECc-CHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 4899998 9999999999999999999998754
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=81.41 E-value=0.33 Score=39.59 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=25.7
Q ss_pred cEEEEEcCCchhhHHHHHHHHhCCCeEEEEec
Q 011707 87 KRVMIIGGDGYCGWATALHLSNKGYEVAIVDS 118 (479)
Q Consensus 87 ~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr 118 (479)
.+|+|+|| |++|-.++..|.+.|.+|.++.+
T Consensus 4 a~VvIIGg-G~~G~e~A~~l~~~g~~v~i~~~ 34 (183)
T d1d7ya1 4 APVVVLGA-GLASVSFVAELRQAGYQGLITVV 34 (183)
T ss_dssp SSEEEECC-SHHHHHHHHHHHHHTCCSCEEEE
T ss_pred CCEEEECc-cHHHHHHHHHHHhcCCceEEEEE
Confidence 35999997 99999999999999987655543
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=81.34 E-value=2.2 Score=34.87 Aligned_cols=73 Identities=22% Similarity=0.271 Sum_probs=44.5
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEEecccccccccccCCCCCCccchhhhhhhh-hcccCCCceeEEEcccCCh
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRC-WKSLTGKNIELYIGDICDF 164 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~v~~Dl~d~ 164 (479)
+.+||=.|+ | .|. .+..|+++|++|+++|...... +.++. .....-.++.+..+|+.+.
T Consensus 31 ~grvLDiGc-G-~G~-~~~~la~~g~~v~gvD~s~~~l-----------------~~a~~~~~~~~~~~~~~~~~d~~~~ 90 (198)
T d2i6ga1 31 PGRTLDLGC-G-NGR-NSLYLAANGYDVTAWDKNPASM-----------------ANLERIKAAEGLDNLQTDLVDLNTL 90 (198)
T ss_dssp SCEEEEETC-T-TSH-HHHHHHHTTCEEEEEESCHHHH-----------------HHHHHHHHHTTCTTEEEEECCTTTC
T ss_pred CCcEEEECC-C-CCH-HHHHHHHHhhhhccccCcHHHH-----------------HHHHHHhhhccccchhhhheecccc
Confidence 458999987 3 555 4567788999999999764321 11111 1111124577888887654
Q ss_pred HHHHHHhhhcCCCEEEEccc
Q 011707 165 EFLSESFKSFEPDAVVHFGE 184 (479)
Q Consensus 165 ~~~~~~~~~~~~D~Vih~A~ 184 (479)
. +.. .+|+|+-+..
T Consensus 91 ~-----~~~-~fD~I~~~~~ 104 (198)
T d2i6ga1 91 T-----FDG-EYDFILSTVV 104 (198)
T ss_dssp C-----CCC-CEEEEEEESC
T ss_pred c-----ccc-cccEEEEeee
Confidence 3 122 5899986654
|
| >d1u0sy_ c.23.1.1 (Y:) CheY protein {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: CheY protein species: Thermotoga maritima [TaxId: 2336]
Probab=81.19 E-value=7.1 Score=28.66 Aligned_cols=31 Identities=29% Similarity=0.408 Sum_probs=26.3
Q ss_pred CcEEEEEcCCchhhHHHHHHHHhCCCeEEEE
Q 011707 86 AKRVMIIGGDGYCGWATALHLSNKGYEVAIV 116 (479)
Q Consensus 86 ~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~ 116 (479)
||+|||.=-.-.+-..+...|-+.|++|+..
T Consensus 1 GkrILivDD~~~~~~~l~~~L~~~g~~v~~~ 31 (118)
T d1u0sy_ 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGE 31 (118)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCceEEE
Confidence 6889999888889999988888889988643
|
| >d2csua3 c.23.4.1 (A:291-453) Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Succinyl-CoA synthetase domains family: Succinyl-CoA synthetase domains domain: Acetate-CoA ligase alpha chain, AcdA, domains 2 and 3 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=80.63 E-value=3.9 Score=32.17 Aligned_cols=32 Identities=28% Similarity=0.415 Sum_probs=28.5
Q ss_pred CCcEEEEEcCCchhhHHHHHHHHhCCCeEEEE
Q 011707 85 KAKRVMIIGGDGYCGWATALHLSNKGYEVAIV 116 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~~l~~~Ll~~G~~V~~~ 116 (479)
+|++|.|++.+|+.|.-++..+.+.|.++--+
T Consensus 2 ~G~rvaiit~sGG~~~l~aD~~~~~Gl~l~~l 33 (163)
T d2csua3 2 RGNKVAIMTNAGGPGVLTADELDKRGLKLATL 33 (163)
T ss_dssp SSSEEEEEESCHHHHHHHHHHHHTTTCEECCC
T ss_pred CCCeEEEEECChHHHHHHHHHHHHcCCccCCC
Confidence 58899999999999999999999999887544
|
| >d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methionine synthase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.62 E-value=3.4 Score=32.50 Aligned_cols=74 Identities=15% Similarity=0.041 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHhC-CCeEEEEecccccccccccCCCCCCccchhhhhhhhhcccCCCceeEEEcccCChHHHHHHhhhcC
Q 011707 97 YCGWATALHLSNK-GYEVAIVDSLIRRLFDHQLGLDSLTPIASIHDRLRCWKSLTGKNIELYIGDICDFEFLSESFKSFE 175 (479)
Q Consensus 97 ~iG~~l~~~Ll~~-G~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~Dl~d~~~~~~~~~~~~ 175 (479)
-||..++..+++. ||+|+-+.. |+ .++.+-+++.+.+
T Consensus 20 diG~~iv~~~l~~~G~~Vi~LG~-----------------------------------------~~-p~e~~~~~~~~~~ 57 (156)
T d3bula2 20 DIGKNIVGVVLQCNNYEIVDLGV-----------------------------------------MV-PAEKILRTAKEVN 57 (156)
T ss_dssp CHHHHHHHHHHHTTTCEEEECCS-----------------------------------------SB-CHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHCCCEEEECCC-----------------------------------------CC-CHHHHHHHHHhhC
Confidence 4899999988887 999986432 22 2455666666668
Q ss_pred CCEEEEcccccCcccccccccccchhhhhhHHHHHHHHHHHHHcCCcceEEEeec
Q 011707 176 PDAVVHFGEQRSAPYSMIDRSRAVFTQHNNVIGTLNVLFAMKEFRQECHLVKLGT 230 (479)
Q Consensus 176 ~D~Vih~A~~~~~~~~~~~~~~~~~~~~~Nv~g~~~ll~~a~~~g~~~~~V~~SS 230 (479)
+|+|.-.+- +...+.....+.+.+++.|.+ ..|.+..
T Consensus 58 ~d~i~lS~l-----------------~~~~~~~~~~~~~~l~~~g~~-~~vivGG 94 (156)
T d3bula2 58 ADLIGLSGL-----------------ITPSLDEMVNVAKEMERQGFT-IPLLIGG 94 (156)
T ss_dssp CSEEEEECC-----------------STHHHHHHHHHHHHHHHTTCC-SCEEEES
T ss_pred CCEEEEecc-----------------cccchHHHHHHHHHHHhcccc-ceEEEec
Confidence 999987653 234677788999999999876 4455554
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=80.46 E-value=0.67 Score=42.29 Aligned_cols=31 Identities=26% Similarity=0.468 Sum_probs=28.0
Q ss_pred EEEEEcCCchhhHHHHHHHHhCCCeEEEEecc
Q 011707 88 RVMIIGGDGYCGWATALHLSNKGYEVAIVDSL 119 (479)
Q Consensus 88 ~vLVtGatG~iG~~l~~~Ll~~G~~V~~~dr~ 119 (479)
-|+|+|+ |+-|..+|.+|++.|++|.++.+-
T Consensus 4 ~VIVVGs-G~aG~v~A~rLaeaG~~VlvLEaG 34 (367)
T d1n4wa1 4 PAVVIGT-GYGAAVSALRLGEAGVQTLMLEMG 34 (367)
T ss_dssp EEEEECC-SHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEeCc-CHHHHHHHHHHHHCcCeEEEEecC
Confidence 3889986 999999999999999999999763
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=80.18 E-value=6 Score=32.89 Aligned_cols=34 Identities=9% Similarity=0.034 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCchhhH-HHHHHHHhC-CCeEEEE-ecc
Q 011707 85 KAKRVMIIGGDGYCGW-ATALHLSNK-GYEVAIV-DSL 119 (479)
Q Consensus 85 ~~~~vLVtGatG~iG~-~l~~~Ll~~-G~~V~~~-dr~ 119 (479)
+.-+|-|+|+ |.+|. +++..|... +.+|+++ |+.
T Consensus 32 ~~iriaiIG~-G~~~~~~~~~~~~~~~~~~ivav~d~~ 68 (221)
T d1h6da1 32 RRFGYAIVGL-GKYALNQILPGFAGCQHSRIEALVSGN 68 (221)
T ss_dssp CCEEEEEECC-SHHHHHTHHHHTTTCSSEEEEEEECSC
T ss_pred CCEEEEEEcC-cHHHHHHHHHHHHhCCCceEEEEecCC
Confidence 3448999996 99996 566665554 6787755 443
|