Citrus Sinensis ID: 011717

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------48
Protein Sequence
MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC
Secondary Structure (PSIPRED)
cccccccccccccEEEcccHHHHHHHHHccccEEcEEEEEEcccccEEEEEEEEccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEccEEEcccccccccccccccccccEEEEcEEEEEEcccEEEEcccccccHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHEcccccHHHHHHHHHccccccccEEEEEEccccEEEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccEEHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccEEEEEcEEEEEcccEEEEEEEEEcccccEEcEccEEEEcccccEEEEEcccccccccHHHHHcccccccccccc
Coil and Loop (DISEMBL)
mrnnpgraipsskvmsfRTAAevddwlysnpmrcpgalhfvdrnattisygiqtnstpiemrgryedptfkfqiPLQLAAEREIARSlvgdpnfswvvglkefahppgeifsAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFIskssssttiGFSVFIVGFLTQLVTafgfpysdqfsntyRTIWSLFPPNLLAEALQLLSdatetpqdigiswsrraecapndtecviTINDIYIWLVATFFVWFILAIYLdniipnaagvrkstfyflkpgywtgkggnkieegsicscvgsvppmehitpddedvLEEENMVKQQIresipdpnvAVQIRGLvktfpgtrkigccckcqktspyhaiKGLWVNIAKDQLfcllgpngagktttiscltgitpvtggdgc
Flexible Loop (DISEMBL)
mrnnpgraipsskvmsfRTAAEVDDWLYSNPMRCPGALHFVDRNATTisygiqtnstpieMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGIswsrraecapnDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQiresipdpnvaVQIRGLVktfpgtrkiGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNgagktttiscltgitpvtggdgc
Low Complexity Region (SEG)
MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDfflnnsfavlfllfflfelnMTGfafmfsafiskssssttigfsvfIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC
Disordered region (IsUnstruct)
****************FRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSV******************************PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV******
Disordered Region (DISOPRED)
******RAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWT***************************************************VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG***
Disordered Region (DISEMBL)
***********SKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC
Disordered Region (DISPRO)
*****GRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGN*************************D*LEEE*******RESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	479	2.2.26 [Sep-21-2011]
Q84K47	983	ABC transporter A family	yes	no	0.995	0.485	0.730	0.0
Q9FLT5	950	ABC transporter A family	no	no	0.995	0.502	0.698	0.0
Q9FKF2	953	ABC transporter A family	no	no	0.995	0.500	0.685	0.0
Q8T5Z7	877	ABC transporter A family	yes	no	0.741	0.404	0.292	9e-30
Q8WWZ7	1642	ATP-binding cassette sub-	yes	no	0.628	0.183	0.305	4e-27
Q8CF82	1642	ATP-binding cassette sub-	yes	no	0.607	0.177	0.281	5e-24
Q9FLT8	917	ABC transporter A family	no	no	0.707	0.369	0.251	8e-23
Q8K448	1642	ATP-binding cassette sub-	yes	no	0.630	0.183	0.306	2e-22
Q84M24	1882	ABC transporter A family	no	no	0.624	0.158	0.279	2e-22
Q9STT5	935	ABC transporter A family	no	no	0.722	0.370	0.267	3e-22

>sp|Q84K47|AB2A_ARATH ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2 PE=2 SV=1

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/479 (73%), Positives = 407/479 (84%), Gaps = 2/479 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M+NNPGR+IP  KV SF     VD WL +NP+  PGALHF++RNAT ISYGIQTNSTP  
Sbjct: 111 MKNNPGRSIPIEKVRSFVDPEAVDTWLMANPLLVPGALHFIERNATVISYGIQTNSTPEM 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RGR+EDPTFKFQIPLQ+AAEREIARSL+GDPNF+WVVG KEF HP  E   A+  IGPT
Sbjct: 171 NRGRFEDPTFKFQIPLQIAAEREIARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLAVAMFGFV QISSL+TEKELKLRQ MTMMG++D+AYWLSWLTWEG L  +S+L  V+
Sbjct: 231 FFLAVAMFGFVLQISSLITEKELKLRQAMTMMGVFDTAYWLSWLTWEGILTAISALLTVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFL NSF V+FLLF LF+ N+ G AFM SAFISKS+S+TT+GF VF+VGF+T
Sbjct: 291 FGMMFQFDFFLKNSFPVVFLLFMLFQFNLIGLAFMLSAFISKSTSATTVGFFVFLVGFVT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QL T+ GFPY+ ++S   R +WSLFPPN  ++ L+LL+DAT TPQD GISWS+RAEC PN
Sbjct: 351 QLATSSGFPYAKKYSRMIRALWSLFPPNTFSQGLKLLADATSTPQDPGISWSKRAECGPN 410

Query: 301 -DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNK 359
            DT CV+TINDIY+WL+ TFF+WF+LA+Y DNI PNA+GVRKS FYFLKPGYWTGKGGN+
Sbjct: 411 DDTGCVLTINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKSIFYFLKPGYWTGKGGNR 470

Query: 360 IEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT 419
           +EEG ICSC+GSVPP++HITPDDEDVLEEE +VKQ   E + DPNVAVQIRGL KT+PGT
Sbjct: 471 VEEGGICSCIGSVPPVDHITPDDEDVLEEETLVKQHSMEGLVDPNVAVQIRGLAKTYPGT 530

Query: 420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478
            K G CCKC+KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTI+CLTG+ PVTGGD 
Sbjct: 531 TKFG-CCKCKKTSPFHALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDA 588

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLT5|AB9A_ARATH ABC transporter A family member 9 OS=Arabidopsis thaliana GN=ABCA9 PE=3 SV=1

 Score =  669 bits (1727), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/481 (69%), Positives = 388/481 (80%), Gaps = 4/481 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IP++KV SF    EVD W  S+P +  GALHFV++NAT ISYGIQTNS+  +
Sbjct: 111 MANNPGRPIPTNKVQSFTKPEEVDAWFMSHPSQVTGALHFVEKNATVISYGIQTNSSSEK 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPP--GE-IFSAVARI 117
            RGR EDPTFKF +PLQ+AAEREIARSL+GDP FSW  G KEFA P   GE I SA   +
Sbjct: 171 KRGRREDPTFKFLVPLQIAAEREIARSLIGDPKFSWDFGFKEFARPAIGGEVIISAFYLM 230

Query: 118 GPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLF 177
           GP FFLA +MFGFV Q+ S+VTEKELKLR+ MT MG+Y+SAYWLSWL WEG L  +SSLF
Sbjct: 231 GPVFFLAFSMFGFVLQLGSVVTEKELKLREAMTTMGVYESAYWLSWLIWEGILTFVSSLF 290

Query: 178 IVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVG 237
           +V+FGMMFQF+FFL NSF ++FLLFFLF+ NM G AF  S+ ISKSSS+TT+GF VF+VG
Sbjct: 291 LVLFGMMFQFEFFLKNSFVLVFLLFFLFQFNMIGLAFALSSIISKSSSATTVGFLVFLVG 350

Query: 238 FLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAEC 297
           F+TQ+VT  GFPYS  +S   R IWSLFPPN  +  LQLL +AT +P D GISWS RA C
Sbjct: 351 FITQIVTTAGFPYSSAYSIGSRVIWSLFPPNTFSAGLQLLLEATSSPGDSGISWSERAIC 410

Query: 298 APNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGG 357
           A  ++ CVIT N IYIWLV TFF WF+LA+Y DNIIPNA+GVRKS FYFLKP YWTGK G
Sbjct: 411 AGGESTCVITTNKIYIWLVGTFFFWFVLALYFDNIIPNASGVRKSIFYFLKPSYWTGKEG 470

Query: 358 NKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFP 417
           NK+EEGSICSC+GSVPP+EHITP+DEDVLEEE +VKQQ  +   DPN+AVQI GL KT+P
Sbjct: 471 NKVEEGSICSCIGSVPPVEHITPEDEDVLEEEILVKQQAMDGRVDPNIAVQIHGLAKTYP 530

Query: 418 GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           GT K+G CCKC KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTISCLTGI PVTGGD
Sbjct: 531 GTTKLG-CCKCTKTSPFHAVKGLWMNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGD 589

Query: 478 G 478
            
Sbjct: 590 A 590

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKF2|AB11A_ARATH ABC transporter A family member 11 OS=Arabidopsis thaliana GN=ABCA11 PE=3 SV=1

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/480 (68%), Positives = 388/480 (80%), Gaps = 3/480 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IP++KV SF+   EVD WL S+P++ PGALHFV+RNA+ ISYG+QTNS+   
Sbjct: 111 MANNPGRPIPTNKVQSFKEPDEVDTWLLSHPLQVPGALHFVERNASVISYGVQTNSSSES 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPP--GEIFSAVARIG 118
            RG+ EDPTFKF +PLQ+AAEREIARSL+GDPNF W +G KEFA P    E  SA++ +G
Sbjct: 171 KRGQTEDPTFKFLVPLQVAAEREIARSLLGDPNFGWGLGFKEFARPAIITETTSALSVMG 230

Query: 119 PTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFI 178
           P FFLA +MFGFV Q+ +LVTEKELKLRQ MTMMG+YDSAYWLSWLTWEG L L+SSLF+
Sbjct: 231 PVFFLAFSMFGFVLQLGALVTEKELKLRQAMTMMGVYDSAYWLSWLTWEGILTLVSSLFL 290

Query: 179 VIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGF 238
           V+FGM+F+FDFFL NSF ++FLLF LF+ NM G AF  S+ ISKSSS+TT+GF VF++GF
Sbjct: 291 VLFGMIFRFDFFLKNSFVLVFLLFLLFQFNMIGLAFALSSIISKSSSATTVGFLVFLIGF 350

Query: 239 LTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECA 298
           +TQ V+A GFPYS  ++ + R +WSLFPPN  +  L+LL DAT TP+  GISWS RA C 
Sbjct: 351 ITQFVSATGFPYSSSYAVSRRVMWSLFPPNTFSAGLKLLLDATSTPKSSGISWSNRAVCE 410

Query: 299 PNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGN 358
                CVI+IN IY WL+ TF  WF+LAIY DNIIPNA+GVRK  FYFL PGYWTGKGGN
Sbjct: 411 GGQATCVISINIIYQWLLGTFLFWFVLAIYFDNIIPNASGVRKPIFYFLAPGYWTGKGGN 470

Query: 359 KIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPG 418
           K+EEGSI SCVGSVP +EH TP+D+DVLEEE  VKQQ  + I DPN+AVQI GL KT+PG
Sbjct: 471 KVEEGSIFSCVGSVPLVEHNTPNDKDVLEEETEVKQQAMDGIADPNIAVQIHGLAKTYPG 530

Query: 419 TRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478
           T K+G CCKC KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTISCLTGI PVTGGD 
Sbjct: 531 TTKLG-CCKCTKTSPFHAVKGLWMNIAKDQLFCLLGPNGAGKTTTISCLTGINPVTGGDA 589

Arabidopsis thaliana (taxid: 3702)

>sp|Q8T5Z7|ABCA1_DICDI ABC transporter A family member 1 OS=Dictyostelium discoideum GN=abcA1 PE=2 SV=1

 Score =  132 bits (331), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 123/421 (29%), Positives = 186/421 (44%), Gaps = 66/421 (15%)

Query: 82  REIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARI-GPTFFLAVAMFGFVFQISSLVTE 140
           ++I    +  P  S+  G   F   P E     AR+ G  F+   +M  F+F +  +  E
Sbjct: 237 QKIRNEKIPPPTISY--GSNAFPRYPPE--QGAARVWGGLFYYCGSMISFIFLLYKVSFE 292

Query: 141 KELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFL 200
           KE KL+Q M MMGL  + YW+SW     T+ +L SL  +I G+  Q  FFL ++F VL +
Sbjct: 293 KENKLKQGMVMMGLSVNQYWISWFITSFTIDILISLITIIVGLACQLPFFLGSNFFVLII 352

Query: 201 LFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTA------FGFPYSDQF 254
            F LF ++M+  AF    FI  + S+  IG  +FIVG + QLV +      F   Y    
Sbjct: 353 TFSLFTISMSSVAFFLLTFIQSTKSAIGIGMGIFIVGSIFQLVFSGMGTMIFELIYQTNS 412

Query: 255 SNTY--RTIWSLFPPNLLAEALQLLSDAT-----------ETPQDIGISWSRRAECAPND 301
           +     R I    P     + L  + + T           +   D+ I  +      P  
Sbjct: 413 NGALAARIILFFIPMFHFTKVLTDIGNVTTNYPLLTYKFSDLSTDLNIGGTVLKTVIPTT 472

Query: 302 TECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIE 361
            + +        +L+A   V+ +LA Y ++IIP   G     ++F+ P YW         
Sbjct: 473 GQSI-------CYLLALIGVYTVLAWYFEHIIPGNDGTSSPPWFFVLPSYWG-------- 517

Query: 362 EGSICSCVGSVPPMEHI-TP--DDEDVLEEENMVKQQIRESIPDPNVA-VQIRGLVKTFP 417
                    S+  + HI TP  DDED       V+  I ++    N A + I GL K++ 
Sbjct: 518 --------LSLKKVRHIPTPYFDDED-------VRAAITKAHDASNRAPLIICGLSKSYT 562

Query: 418 GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
                    + +KT   HA+K L +++ K  +   LG NG GK+TTI  LTG+   T GD
Sbjct: 563 K------LFRPKKT--VHAVKYLSLSVEKGTILGFLGSNGCGKSTTIGMLTGLLEPTAGD 614

Query: 478 G 478
            
Sbjct: 615 A 615

Dictyostelium discoideum (taxid: 44689)

>sp|Q8WWZ7|ABCA5_HUMAN ATP-binding cassette sub-family A member 5 OS=Homo sapiens GN=ABCA5 PE=2 SV=2

 Score =  122 bits (307), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 111/363 (30%), Positives = 175/363 (48%), Gaps = 62/363 (17%)

Query: 123 LAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG 182
           +A + FG+   I  +V EKE K+++ + +MGL+D+A+WLSW+    +L+ L SL + +  
Sbjct: 227 IAFSPFGYFLAIH-IVAEKEKKIKEFLKIMGLHDTAFWLSWVLLYTSLIFLMSLLMAVIA 285

Query: 183 MMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIV-GFLTQ 241
                  F  +S  V+FLLFFL+ L+   FA M +    KS     + F V +  GF+  
Sbjct: 286 TASLL--FPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGIVEFFVTVAFGFIGL 343

Query: 242 LVTAF-GFPYSDQFSNTYRTIWSLFPPNL-------LAEALQLLSDATETPQDIGISWSR 293
           ++     FP S         +W LF P         +A+ + L  D  E     G S+S 
Sbjct: 344 MIILIESFPKS--------LVW-LFSPFCHCTFVIGIAQVMHL-EDFNE-----GASFSN 388

Query: 294 RAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWT 353
                      +ITI  I + L + F+V  +LA+YLD +IP   G+R+S+ YFLKP YW+
Sbjct: 389 ---LTAGPYPLIITI--IMLTLNSIFYV--LLAVYLDQVIPGEFGLRRSSLYFLKPSYWS 441

Query: 354 GKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLV 413
            K     EE S  +  G++   E I P   + + +E                A++I G+ 
Sbjct: 442 -KSKRNYEELSEGNVNGNISFSEIIEPVSSEFVGKE----------------AIRISGIQ 484

Query: 414 KTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV 473
           KT+   RK G            A++ L  +I + Q+  LLG +G GK+T ++ L G+ P 
Sbjct: 485 KTY---RKKG--------ENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPP 533

Query: 474 TGG 476
           + G
Sbjct: 534 SDG 536

May play a role in the processing of autolysosomes.

Homo sapiens (taxid: 9606)

>sp|Q8CF82|ABCA5_RAT ATP-binding cassette sub-family A member 5 OS=Rattus norvegicus GN=Abca5 PE=2 SV=1

 Score =  112 bits (281), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 105/373 (28%), Positives = 170/373 (45%), Gaps = 82/373 (21%)

Query: 123 LAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG 182
           +A + FG+   I  +V EKE +L++ + +MGL+D+A+WLSW+    +L+ L SL + +  
Sbjct: 227 IAFSPFGYFLAIH-IVAEKEKRLKEFLKIMGLHDTAFWLSWVLLYTSLIFLMSLLMAVIA 285

Query: 183 MMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQL 242
                  F  +S  V+FLLFFL+ L+   FA M +    KS     + F V +V     L
Sbjct: 286 T--ASSLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGVVEFFVTVVFGFVGL 343

Query: 243 VTAF--GFPYSDQFSNTYRTIWSLFPPNL-------LAEALQ--------LLSDATETPQ 285
           +      FP S         +W LF P         +A+ +         L S  TE P 
Sbjct: 344 LIVLVESFPRS--------LVW-LFSPLCQCAFLIGIAQVMHLEDFNEGALFSSLTEGPY 394

Query: 286 DIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFY 345
            + I+ +  A                   L + F+   +LA+YLD +IP   G+R+S+ Y
Sbjct: 395 PLIITLTMLA-------------------LDSVFYA--LLAVYLDQVIPGEFGLRRSSLY 433

Query: 346 FLKPGYWTGKGGN--KIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDP 403
           FLKP YW+    N  ++ EG+I    G++   E + P   + + +E              
Sbjct: 434 FLKPSYWSKNKRNYKELSEGNIN---GNISLNEIVEPVSSEFIGKE-------------- 476

Query: 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTT 463
             A++I G+ K +   RK        K     A++ L  +I + Q+  LLG +G GK+T 
Sbjct: 477 --AIRISGIQKAY---RK--------KNETVEALRNLSFDIYEGQITALLGHSGTGKSTL 523

Query: 464 ISCLTGITPVTGG 476
           ++ L G+ P + G
Sbjct: 524 MNILCGLCPPSDG 536

May play a role in the processing of autolysosomes.

Rattus norvegicus (taxid: 10116)

>sp|Q9FLT8|AB12A_ARATH ABC transporter A family member 12 OS=Arabidopsis thaliana GN=ABCA12 PE=3 SV=1

 Score =  108 bits (271), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 169/385 (43%), Gaps = 46/385 (11%)

Query: 100 LKEFAHPPGEIFSAVARI-GPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSA 158
           LKE      ++   +A + GP FF  V +  F   ++SLV EK+ +LR +M M GL D  
Sbjct: 309 LKEVPKEETKMNQDIASLLGPLFFTWVVLLLFPVILTSLVYEKQERLRIIMKMHGLGDGP 368

Query: 159 YWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSA 218
           YW+    +  T+ +L  + +V FG      +F  N +++ F+ +F++       AF+ S+
Sbjct: 369 YWMISYAYFLTISMLYVISLVGFGSAIGLKYFRRNDYSIQFVFYFIYSNLQISLAFLVSS 428

Query: 219 FISKSSSSTTIGFSVFIVGFLTQLVTAFGFPY---SDQFSNTYRTIWSLFPPNLLAEALQ 275
             SK  + T I    +I+ + T L+ +F F     +  F   +     L+P   L   L 
Sbjct: 429 IFSKVKTVTVIA---YILVYGTGLLGSFLFQKMIETQSFPEEWILAMELYPGFSLYRGLY 485

Query: 276 LLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPN 335
             S         G+ W   ++    +  C++++          +F+  I+A Y+D +  +
Sbjct: 486 EFSQYASRGN--GMKWQDLSDSGMGEVFCIMSVE---------WFLALIVAYYIDQVFTS 534

Query: 336 AAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEH----ITPDDEDVLEEENM 391
                K  F+FL          N  +  S      +V  ++     I  D  DV +E   
Sbjct: 535 G----KHPFFFLV---------NLFKSPSSLPRRPTVQRLDSKRVFIDMDKHDVTQERES 581

Query: 392 VKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFC 451
           V++   E       A+    L K +PG              P  A++GL+++++  + F 
Sbjct: 582 VQKLRNEG--STGHAILCDNLKKVYPGR---------DGNPPKMAVRGLYLSVSSGECFG 630

Query: 452 LLGPNGAGKTTTISCLTGITPVTGG 476
           +LGPNGAGKT+ IS +TG+   + G
Sbjct: 631 MLGPNGAGKTSFISMMTGLLKPSSG 655

Arabidopsis thaliana (taxid: 3702)

>sp|Q8K448|ABCA5_MOUSE ATP-binding cassette sub-family A member 5 OS=Mus musculus GN=Abca5 PE=1 SV=2

 Score =  107 bits (268), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 176/362 (48%), Gaps = 60/362 (16%)

Query: 123 LAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG 182
           +A + FG+   I  +V EKE KL++ + +MGL+D+A+WLSW+    +L+ L SL + +  
Sbjct: 227 IAFSPFGYFLAIH-IVAEKEKKLKEFLKIMGLHDTAFWLSWVLLYASLIFLMSLLMAVIA 285

Query: 183 MMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQL 242
                  F  +S  V+FLLFFL+ L+   FA M +    KS     + F V +V     L
Sbjct: 286 T--ASSLFPQSSSIVIFLLFFLYGLSSVFFALMLTPLFKKSKHVGVVEFFVTVVFGFVGL 343

Query: 243 VTAF--GFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           +      FP S         +W LF P  L +   L+  A    Q + +          N
Sbjct: 344 LIVLIESFPRS--------LVW-LFSP--LCQCAFLIGIA----QVMHLEDFNEGALFSN 388

Query: 301 DTE----CVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKG 356
            TE     +ITI  I + L + F+V  +LA+YLD +IP   G+R+S+ YFLKP YW+   
Sbjct: 389 LTEGPYPLIITI--IMLALDSVFYV--LLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKNK 444

Query: 357 GN--KIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVK 414
            N  ++ EG+I    G++   E + P   + + +E                A++I G+ K
Sbjct: 445 RNYKELSEGNIN---GNISLNEIVEPVSSEFIGKE----------------AIRISGIQK 485

Query: 415 TFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474
           ++   RK        KT    A++ L  +I + Q+  LLG +G GK+T ++ L G+ P +
Sbjct: 486 SY---RK--------KTENVEALRNLSFDIYEGQITALLGHSGTGKSTLMNILCGLCPPS 534

Query: 475 GG 476
            G
Sbjct: 535 DG 536

May play a role in the processing of autolysosomes.

Mus musculus (taxid: 10090)

>sp|Q84M24|AB1A_ARATH ABC transporter A family member 1 OS=Arabidopsis thaliana GN=ABCA1 PE=2 SV=2

 Score =  107 bits (267), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/361 (27%), Positives = 163/361 (45%), Gaps = 62/361 (17%)

Query: 134 ISSLVTEKELKLRQVMTMMGLYDSAYWLSW-LTWEGTLVLLSSLFIV-IFGMMFQFDFFL 191
           IS  V EKE K+R+ + MMGL D  + LSW +T+     L S +      G +F++    
Sbjct: 295 ISYSVFEKEQKIREGLYMMGLKDEIFHLSWFITYALQFALCSGIITACTMGSLFKY---- 350

Query: 192 NNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPY- 250
            +   ++F  FFLF L+    +FM S F +++ ++  +G   F+  F         FPY 
Sbjct: 351 -SDKTLVFTYFFLFGLSAIMLSFMISTFFTRAKTAVAVGTLTFLGAF---------FPYY 400

Query: 251 ---SDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSR--RAECAPNDTECV 305
               +  S   + + SL  P   A AL  ++ A      +G+ WS   RA    +   C+
Sbjct: 401 TVNDESVSMVLKVVASLLSPT--AFALGSINFADYERAHVGLRWSNIWRASSGVSFFVCL 458

Query: 306 ITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKS-TFYFLKPGYWTGKGGNKIEEGS 364
           +        ++    ++  L +YLD ++P   GVR    F F K   + G+  N ++   
Sbjct: 459 L-------MMLLDSILYCALGLYLDKVLPRENGVRYPWNFIFSK---YFGRKKNNLQ--- 505

Query: 365 ICSCVGSVPPME-HITPDDEDVLEEE------NMVKQQIRESIPDPNVAVQIRGLVKTFP 417
                  +P  E  + P D +V + E        +  ++R+   D    +Q+R L K + 
Sbjct: 506 -----NRIPGFETDMFPADIEVNQGEPFDPVFESISLEMRQQELDGR-CIQVRNLHKVYA 559

Query: 418 GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
             R  G CC         A+  L + + ++Q+  LLG NGAGK+TTIS L G+ P T GD
Sbjct: 560 SRR--GNCC---------AVNSLQLTLYENQILSLLGHNGAGKSTTISMLVGLLPPTSGD 608

Query: 478 G 478
            
Sbjct: 609 A 609

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STT5|AB7A_ARATH ABC transporter A family member 7 OS=Arabidopsis thaliana GN=ABCA7 PE=1 SV=2

 Score =  106 bits (265), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 164/381 (43%), Gaps = 35/381 (9%)

Query: 100 LKEFAHPPGEIFSAVAR-IGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSA 158
           +KE   P   +   +A  IGP FF  V +  F   +SSLV EK+  LR +M M GL D  
Sbjct: 324 VKEMPKPETSLRLDIASLIGPLFFTWVILLLFPVILSSLVYEKQQHLRIIMKMHGLGDGP 383

Query: 159 YWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSA 218
           YW+    +  T+ +L  + ++IFG      FF  NS+++ F+ +FL+       AF+ S+
Sbjct: 384 YWMISYAYFLTISVLYVICLMIFGSAIGLKFFRLNSYSIQFVFYFLYLNLQIALAFLVSS 443

Query: 219 FISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLS 278
             SK  +ST   +       L  L           F   +  +  L+P   L   L  L+
Sbjct: 444 VFSKVKTSTVASYIYVFGSGLLGLFLLNFLIEDSSFPRGWIIVMELYPGFSLYRGLYELA 503

Query: 279 D---ATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPN 335
                     + G+ W    + A         ++D++  +V  +F+  I A Y+D I   
Sbjct: 504 QFAFRGNLRGEDGMKWKDFGDSA---------MDDVFYIIVVEWFLALIAAYYIDKI--- 551

Query: 336 AAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQ 395
           ++  R   F+   P     K    +   S+    GS   ++   P   DV  E   V++ 
Sbjct: 552 SSSGRNPLFFLQNP----FKKSPSLRRPSL-QRQGSKVSVDMEKP---DVTHESKKVERL 603

Query: 396 IRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGP 455
           + ES    + A+    L K +PG              P  A++GL + +   + F +LGP
Sbjct: 604 MLES--STSHAIVCDNLKKVYPGR---------DGNPPKLAVRGLSLAVPSGECFGMLGP 652

Query: 456 NGAGKTTTISCLTGITPVTGG 476
           NGAGKT+ I+ +TG+   T G
Sbjct: 653 NGAGKTSFINMMTGLLKPTSG 673

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
22331647	983	ABC transporter A family member 2 [Arabi	0.995	0.485	0.730	0.0
4741190	1011	ABC-type transport-like protein [Arabido	0.995	0.471	0.730	0.0
297819380	982	hypothetical protein ARALYDRAFT_485135 [	0.995	0.485	0.726	0.0
449440766	976	PREDICTED: ABC transporter A family memb	0.997	0.489	0.760	0.0
356516766	967	PREDICTED: ABC transporter A family memb	0.997	0.494	0.725	0.0
225456711	958	PREDICTED: ABC transporter A family memb	0.995	0.497	0.782	0.0
326501630	964	predicted protein [Hordeum vulgare subsp	0.991	0.492	0.700	0.0
357147716	965	PREDICTED: ABC transporter A family memb	0.991	0.492	0.693	0.0
225456709	950	PREDICTED: ABC transporter A family memb	0.979	0.493	0.769	0.0
147841474	909	hypothetical protein VITISV_033311 [Viti	0.979	0.515	0.769	0.0

>gi|22331647|ref|NP_190357.2| ABC transporter A family member 2 [Arabidopsis thaliana] gi|75327852|sp|Q84K47.1|AB2A_ARATH RecName: Full=ABC transporter A family member 2; Short=ABC transporter ABCA.2; Short=AtABCA2; AltName: Full=ABC2 homolog 1 gi|28393591|gb|AAO42215.1| putative ABC transporter protein [Arabidopsis thaliana] gi|28973103|gb|AAO63876.1| putative ABC transporter protein [Arabidopsis thaliana] gi|332644802|gb|AEE78323.1| ABC transporter A family member 2 [Arabidopsis thaliana]

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/479 (73%), Positives = 407/479 (84%), Gaps = 2/479 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M+NNPGR+IP  KV SF     VD WL +NP+  PGALHF++RNAT ISYGIQTNSTP  
Sbjct: 111 MKNNPGRSIPIEKVRSFVDPEAVDTWLMANPLLVPGALHFIERNATVISYGIQTNSTPEM 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RGR+EDPTFKFQIPLQ+AAEREIARSL+GDPNF+WVVG KEF HP  E   A+  IGPT
Sbjct: 171 NRGRFEDPTFKFQIPLQIAAEREIARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLAVAMFGFV QISSL+TEKELKLRQ MTMMG++D+AYWLSWLTWEG L  +S+L  V+
Sbjct: 231 FFLAVAMFGFVLQISSLITEKELKLRQAMTMMGVFDTAYWLSWLTWEGILTAISALLTVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFL NSF V+FLLF LF+ N+ G AFM SAFISKS+S+TT+GF VF+VGF+T
Sbjct: 291 FGMMFQFDFFLKNSFPVVFLLFMLFQFNLIGLAFMLSAFISKSTSATTVGFFVFLVGFVT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QL T+ GFPY+ ++S   R +WSLFPPN  ++ L+LL+DAT TPQD GISWS+RAEC PN
Sbjct: 351 QLATSSGFPYAKKYSRMIRALWSLFPPNTFSQGLKLLADATSTPQDPGISWSKRAECGPN 410

Query: 301 -DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNK 359
            DT CV+TINDIY+WL+ TFF+WF+LA+Y DNI PNA+GVRKS FYFLKPGYWTGKGGN+
Sbjct: 411 DDTGCVLTINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKSIFYFLKPGYWTGKGGNR 470

Query: 360 IEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT 419
           +EEG ICSC+GSVPP++HITPDDEDVLEEE +VKQ   E + DPNVAVQIRGL KT+PGT
Sbjct: 471 VEEGGICSCIGSVPPVDHITPDDEDVLEEETLVKQHSMEGLVDPNVAVQIRGLAKTYPGT 530

Query: 420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478
            K G CCKC+KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTI+CLTG+ PVTGGD 
Sbjct: 531 TKFG-CCKCKKTSPFHALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDA 588

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4741190|emb|CAB41856.1| ABC-type transport-like protein [Arabidopsis thaliana]

 Score =  756 bits (1952), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/479 (73%), Positives = 407/479 (84%), Gaps = 2/479 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M+NNPGR+IP  KV SF     VD WL +NP+  PGALHF++RNAT ISYGIQTNSTP  
Sbjct: 111 MKNNPGRSIPIEKVRSFVDPEAVDTWLMANPLLVPGALHFIERNATVISYGIQTNSTPEM 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RGR+EDPTFKFQIPLQ+AAEREIARSL+GDPNF+WVVG KEF HP  E   A+  IGPT
Sbjct: 171 NRGRFEDPTFKFQIPLQIAAEREIARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLAVAMFGFV QISSL+TEKELKLRQ MTMMG++D+AYWLSWLTWEG L  +S+L  V+
Sbjct: 231 FFLAVAMFGFVLQISSLITEKELKLRQAMTMMGVFDTAYWLSWLTWEGILTAISALLTVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFL NSF V+FLLF LF+ N+ G AFM SAFISKS+S+TT+GF VF+VGF+T
Sbjct: 291 FGMMFQFDFFLKNSFPVVFLLFMLFQFNLIGLAFMLSAFISKSTSATTVGFFVFLVGFVT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QL T+ GFPY+ ++S   R +WSLFPPN  ++ L+LL+DAT TPQD GISWS+RAEC PN
Sbjct: 351 QLATSSGFPYAKKYSRMIRALWSLFPPNTFSQGLKLLADATSTPQDPGISWSKRAECGPN 410

Query: 301 -DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNK 359
            DT CV+TINDIY+WL+ TFF+WF+LA+Y DNI PNA+GVRKS FYFLKPGYWTGKGGN+
Sbjct: 411 DDTGCVLTINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKSIFYFLKPGYWTGKGGNR 470

Query: 360 IEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT 419
           +EEG ICSC+GSVPP++HITPDDEDVLEEE +VKQ   E + DPNVAVQIRGL KT+PGT
Sbjct: 471 VEEGGICSCIGSVPPVDHITPDDEDVLEEETLVKQHSMEGLVDPNVAVQIRGLAKTYPGT 530

Query: 420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478
            K G CCKC+KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTI+CLTG+ PVTGGD 
Sbjct: 531 TKFG-CCKCKKTSPFHALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDA 588

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819380|ref|XP_002877573.1| hypothetical protein ARALYDRAFT_485135 [Arabidopsis lyrata subsp. lyrata] gi|297323411|gb|EFH53832.1| hypothetical protein ARALYDRAFT_485135 [Arabidopsis lyrata subsp. lyrata]

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/479 (72%), Positives = 405/479 (84%), Gaps = 2/479 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M+NNPGR IP+ KV SF     VD WL +NP+  PGALHFV+RNAT ISYGIQTNSTP  
Sbjct: 111 MKNNPGRPIPTEKVRSFVDPEAVDTWLMANPLLVPGALHFVERNATVISYGIQTNSTPEM 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RGR+EDPTFKFQIPLQ+AAEREIARSL+GDPNF+WVVG KEF HP  E   A+  IGPT
Sbjct: 171 NRGRFEDPTFKFQIPLQIAAEREIARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLAVAMFGFV QISSL+TEKELKLRQ MTMMG++D+AYWLSWLTWEG L  +S+L  V+
Sbjct: 231 FFLAVAMFGFVLQISSLITEKELKLRQAMTMMGVFDTAYWLSWLTWEGILTAISALLTVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFL NSF V+FLLF LF+ N+ G AFM SAFISKSSS+TT+GF VF+VGF+T
Sbjct: 291 FGMMFQFDFFLKNSFPVVFLLFMLFQFNLIGLAFMLSAFISKSSSATTVGFFVFLVGFVT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QL T+ GFPY+ ++S   R++WSLFPPN  ++ L+LL+DAT TPQD GISWS+RAEC PN
Sbjct: 351 QLATSTGFPYAKKYSRRIRSLWSLFPPNTFSQGLKLLADATSTPQDPGISWSKRAECGPN 410

Query: 301 DT-ECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNK 359
           D  +CVITINDIY+WL+ TFF+WF+LA+Y DNI PNA+GVRKS FYFLKPGYWTGKGGN+
Sbjct: 411 DDIDCVITINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKSIFYFLKPGYWTGKGGNR 470

Query: 360 IEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT 419
           +EEG ICSC GSVPP++HITPDDEDVLEEE +VKQ   + + DPN+AVQIRGL KT+PGT
Sbjct: 471 VEEGGICSCTGSVPPVDHITPDDEDVLEEETLVKQHSVDGLVDPNIAVQIRGLAKTYPGT 530

Query: 420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478
              G CCKC+KT P+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTI+CLTG+ PVTGGD 
Sbjct: 531 TNFG-CCKCKKTPPFHALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGDA 588

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440766|ref|XP_004138155.1| PREDICTED: ABC transporter A family member 2-like [Cucumis sativus] gi|449477295|ref|XP_004154984.1| PREDICTED: ABC transporter A family member 2-like [Cucumis sativus]

 Score =  749 bits (1935), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/480 (76%), Positives = 409/480 (85%), Gaps = 2/480 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M  NPGR+IP++KV+SF T AEVD WL++NPM CPGALHF +RN T ISYG+QTNST + 
Sbjct: 111 MAKNPGRSIPANKVLSFGTPAEVDKWLFNNPMTCPGALHFTERNGTVISYGLQTNSTAVA 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RG+YEDP FKFQIPLQ+AAEREIAR  +GDPNFSWVV   EFAHP    FSAV  IGPT
Sbjct: 171 RRGQYEDPIFKFQIPLQIAAEREIARFFIGDPNFSWVVNFMEFAHPAVNKFSAVNTIGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLA+AMFGFV QISSL+TEKELKLRQ MTMMGLYD+AYWLSWLTWEG   L++S+F V+
Sbjct: 231 FFLAIAMFGFVLQISSLITEKELKLRQAMTMMGLYDTAYWLSWLTWEGITTLIASIFTVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFF  N+FAV+FL+FFLF+LNM GFAFM SAFISKSSSSTT+GFS+FIVGFLT
Sbjct: 291 FGMMFQFDFFSKNNFAVVFLVFFLFQLNMVGFAFMLSAFISKSSSSTTVGFSIFIVGFLT 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QLVT FGFPY+D  S  Y+ IWSLFPPNLLA+AL LLSDAT TP D GISWS R EC P 
Sbjct: 351 QLVTGFGFPYADGISKAYQIIWSLFPPNLLAKALSLLSDATATPSDPGISWSSRTECIPK 410

Query: 301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKI 360
            +ECVITIN+IY WLV TFF+WF LAIY DNIIPNAAGVRKS FYFL+PGYWTGKGG+K+
Sbjct: 411 GSECVITINEIYSWLVGTFFLWFFLAIYFDNIIPNAAGVRKSAFYFLRPGYWTGKGGSKV 470

Query: 361 EEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT- 419
           EEG I SC+GS+P +E ITPDDEDVLEEE+ VKQQ+   I DPNVAVQIRGL KT+PG  
Sbjct: 471 EEGGIFSCLGSLPVLEPITPDDEDVLEEESTVKQQLSNGIVDPNVAVQIRGLAKTYPGAW 530

Query: 420 -RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478
             K+GCCCKC KTSPYHA++GLWVN AKDQLFCLLGPNGAGKTT+ISCLTGITPVTGGD 
Sbjct: 531 KVKLGCCCKCTKTSPYHAVRGLWVNFAKDQLFCLLGPNGAGKTTSISCLTGITPVTGGDA 590

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516766|ref|XP_003527064.1| PREDICTED: ABC transporter A family member 2-like [Glycine max]

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/478 (72%), Positives = 395/478 (82%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IP SKV SF+  +EVD WL SNPMRCPGALHF +RN T ISYG+QTNST ++
Sbjct: 112 MNNNPGRPIPPSKVKSFKEKSEVDAWLLSNPMRCPGALHFSERNDTVISYGLQTNSTSLQ 171

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RG+YEDPT  FQ+PLQLAAEREIAR L+GD +FSW V L+EFAHP    FSAVA IGP 
Sbjct: 172 RRGKYEDPTASFQLPLQLAAEREIARYLIGDADFSWNVFLREFAHPSMNPFSAVASIGPA 231

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLA+AMF FV QISSLVTEKELKLRQ M MMGLYD AYW SWL WE  + +LSSL IV+
Sbjct: 232 FFLAIAMFNFVLQISSLVTEKELKLRQAMNMMGLYDFAYWFSWLIWEAVVTILSSLLIVL 291

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQF FFL+NSF VLF+LFFLFELNMTG AFM SAFI KSSS+TT+GFS+FIVGF+T
Sbjct: 292 FGMMFQFRFFLDNSFVVLFVLFFLFELNMTGLAFMISAFIRKSSSATTVGFSIFIVGFVT 351

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QLV   GFPY+D FS T R +WSLFPPNL A+ +++LSDA  T +D GISWS+R ECA N
Sbjct: 352 QLVVQQGFPYTDSFSKTIRNVWSLFPPNLFAQGIKVLSDAVATSEDKGISWSKRGECALN 411

Query: 301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKI 360
           D++CVITI+DIY WL ATFF+WF+LAIY DNIIPNA+GVRKS  YFL P YW GKGG K+
Sbjct: 412 DSDCVITIDDIYKWLAATFFLWFVLAIYFDNIIPNASGVRKSILYFLNPSYWMGKGGQKV 471

Query: 361 EEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTR 420
           +EG +CSC+GS P  E  TPDDEDVLEEEN VKQQ+ E + D NVAVQIRGL KT+PGTR
Sbjct: 472 KEGGVCSCIGSAPRQEQSTPDDEDVLEEENKVKQQLTEGLLDANVAVQIRGLAKTYPGTR 531

Query: 421 KIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478
            IGCC KC++TSPY+A+KGLWVN AKDQLFCLLGPNGAGKTT I+CLTG+TPVT GD 
Sbjct: 532 SIGCCFKCKRTSPYNAVKGLWVNFAKDQLFCLLGPNGAGKTTAINCLTGVTPVTDGDA 589

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456711|ref|XP_002274102.1| PREDICTED: ABC transporter A family member 2 isoform 1 [Vitis vinifera] gi|297734007|emb|CBI15254.3| unnamed protein product [Vitis vinifera]

 Score =  717 bits (1850), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/478 (78%), Positives = 418/478 (87%), Gaps = 1/478 (0%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IPS KV SF T  EVD WLYS+PMRCPGALHFV+ NAT ISYG+QTNSTP+ 
Sbjct: 111 MTNNPGRPIPSDKVKSFSTRDEVDAWLYSDPMRCPGALHFVETNATVISYGLQTNSTPVS 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RG YEDPTFKFQIPLQ+ AERE+ARSL+GDPNF+W    KEFAHP  E FS VA +GPT
Sbjct: 171 KRGHYEDPTFKFQIPLQIVAEREMARSLIGDPNFNWTARFKEFAHPAIEEFSVVAVVGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLA+AMFGFV QISSL+TEKELKLRQ MTMMGLYDSAYWLSWLTWEG ++L++SLFIV+
Sbjct: 231 FFLAIAMFGFVIQISSLITEKELKLRQAMTMMGLYDSAYWLSWLTWEGIIILIASLFIVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFLNNSF+V+FLLFFLF+LNM G+AFM S+FISKSSSST IGF +FI GF +
Sbjct: 291 FGMMFQFDFFLNNSFSVVFLLFFLFQLNMIGYAFMLSSFISKSSSSTIIGFCIFIFGFFS 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QLVT FGFPYS+ F N YR IWSLFPPNLLAEAL LL+DAT TPQD GISWS+RA+CAPN
Sbjct: 351 QLVTIFGFPYSNNFPNFYRIIWSLFPPNLLAEALSLLADATSTPQDPGISWSKRADCAPN 410

Query: 301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKI 360
           D +CVITINDIYIWL ATFF+WF+LAIY DNIIPN++GVRKS FYFLKPGYWTG+GGNK+
Sbjct: 411 DLDCVITINDIYIWLTATFFLWFLLAIYFDNIIPNSSGVRKSLFYFLKPGYWTGRGGNKV 470

Query: 361 EEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTR 420
           EEG ICSC+GS+P +E ITPDDEDVLEEEN VKQQ RE + DPN+AVQI GL KT+PGT 
Sbjct: 471 EEGGICSCIGSIPSLEDITPDDEDVLEEENKVKQQRREGVADPNIAVQICGLAKTYPGTT 530

Query: 421 KIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478
            IG CCKC+KTSPYHA+KGLWVN  K+QLFCLLGPNGAGKTTTI+CLTGITPVT GD 
Sbjct: 531 NIG-CCKCKKTSPYHALKGLWVNFPKNQLFCLLGPNGAGKTTTINCLTGITPVTEGDA 587

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326501630|dbj|BAK02604.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  701 bits (1809), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/477 (70%), Positives = 395/477 (82%), Gaps = 2/477 (0%)

Query: 2   RNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEM 61
           RNNPGR IP+ KV+ FRT  EVD WL+ NPMRCPGALHF D N T +SYGIQTNSTP+  
Sbjct: 112 RNNPGRPIPAEKVLGFRTPDEVDAWLFENPMRCPGALHFQDINPTQMSYGIQTNSTPVAR 171

Query: 62  RGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTF 121
           RG YEDPTFKFQIPLQ+AAERE+AR ++GDPNFSW VG KEFAHP  E FS +A+ GPTF
Sbjct: 172 RGTYEDPTFKFQIPLQVAAEREMARLIIGDPNFSWTVGFKEFAHPATETFSTIAQAGPTF 231

Query: 122 FLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIF 181
           FLA+AMFGFVFQIS+LVTEKELKLRQ M++MGLY+SAYWLSWLTWE  L L+S+LF V+F
Sbjct: 232 FLAIAMFGFVFQISALVTEKELKLRQAMSIMGLYESAYWLSWLTWEALLTLISALFTVLF 291

Query: 182 GMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQ 241
           GMMFQFDFFLNNSF +LF LFFLF+LNM GFAFM S F++K++S+TT+GF++FI+GFLTQ
Sbjct: 292 GMMFQFDFFLNNSFGILFFLFFLFQLNMLGFAFMISTFVAKAASATTVGFAIFIIGFLTQ 351

Query: 242 LVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPND 301
           LVT FGFPYS+ +   YRTIWS FPPN+ A+AL +L  AT TP+D GISW++R  C   +
Sbjct: 352 LVTTFGFPYSNTYEAYYRTIWSFFPPNVFAQALNILGKATATPEDKGISWNQRTTCQSFE 411

Query: 302 TECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIE 361
           T+CVIT++DIYIWL++TFF+WFILAIY DNIIPN  GVRKS  YFL P YWTGKGG K+ 
Sbjct: 412 TDCVITVDDIYIWLISTFFLWFILAIYFDNIIPNVNGVRKSVLYFLTPSYWTGKGG-KMR 470

Query: 362 EGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRK 421
           EG +CSC GS    +  +P DEDVL EEN+VK+Q   +  DP VAVQIRGL KT+PG+  
Sbjct: 471 EGGLCSCFGSSHSADDASPTDEDVLTEENLVKEQAAGNEVDPGVAVQIRGLRKTYPGSFN 530

Query: 422 IGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478
           +G CCKC+ T P+H++KGLWVN+ KDQLFCLLGPNGAGKTTTISCLTGITP+TGGD 
Sbjct: 531 MG-CCKCKTTKPFHSVKGLWVNLEKDQLFCLLGPNGAGKTTTISCLTGITPITGGDA 586

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357147716|ref|XP_003574455.1| PREDICTED: ABC transporter A family member 2-like [Brachypodium distachyon]

 Score =  700 bits (1807), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/476 (69%), Positives = 393/476 (82%), Gaps = 1/476 (0%)

Query: 3   NNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIEMR 62
           NNPGR IP+ KV+ F T  EVD WL+ NPMRCPGALHF D NAT ++YGIQTNSTP+  R
Sbjct: 113 NNPGRPIPADKVLGFGTPDEVDAWLFENPMRCPGALHFQDINATQLTYGIQTNSTPVARR 172

Query: 63  GRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFF 122
           G YEDPTFKFQIPLQ+AAERE+AR ++GDPNFSW VG KEFAHP  E FS +A+ GPTFF
Sbjct: 173 GTYEDPTFKFQIPLQVAAEREMARLIIGDPNFSWTVGFKEFAHPATETFSTIAQAGPTFF 232

Query: 123 LAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG 182
           LA+AMFGFVFQIS+LVTEKELKLRQ M++MGLY+S+YWLSWLTWE  L LLS+LF V+FG
Sbjct: 233 LAIAMFGFVFQISALVTEKELKLRQAMSIMGLYESSYWLSWLTWEAFLTLLSALFTVLFG 292

Query: 183 MMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQL 242
           MMFQFDFFLNN+F +LFLLFFLF+LNM  FAFM S F++K++S+TT+GF++FI+GFLTQL
Sbjct: 293 MMFQFDFFLNNNFGILFLLFFLFQLNMLSFAFMISTFVTKAASATTVGFAIFIIGFLTQL 352

Query: 243 VTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDT 302
           VT FGFPYS  +   YRTIWSLFPPN+ A+AL +L  AT TP+D GISW++R  C   +T
Sbjct: 353 VTTFGFPYSTSYQKYYRTIWSLFPPNVFAQALNILGKATATPEDKGISWNQRGTCQSFET 412

Query: 303 ECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEE 362
           +CVIT++DIY WL++TFFVWFILAIY DNIIPN  GVRKS FYFL P YWTGKGG K++E
Sbjct: 413 DCVITVDDIYKWLISTFFVWFILAIYFDNIIPNVNGVRKSVFYFLMPSYWTGKGGGKMQE 472

Query: 363 GSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKI 422
           G +CS  GS    +  TP DEDVL E+N+VK Q   +  DP +AVQ+RGL KT+PG+  +
Sbjct: 473 GGLCSFFGSNRSADDATPTDEDVLTEQNLVKGQAASNEVDPGIAVQVRGLRKTYPGSFSM 532

Query: 423 GCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478
           G CCKC+ T P+H++KGLWVN+ KDQLFCLLGPNGAGKTTTISCLTGITP+TGGD 
Sbjct: 533 G-CCKCRTTKPFHSVKGLWVNLEKDQLFCLLGPNGAGKTTTISCLTGITPITGGDA 587

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456709|ref|XP_002274135.1| PREDICTED: ABC transporter A family member 2 isoform 2 [Vitis vinifera]

 Score =  694 bits (1792), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/478 (76%), Positives = 411/478 (85%), Gaps = 9/478 (1%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IPS KV SF T  EVD WLYS+PMRCPGALHFV+ NAT ISYG+QTNSTP+ 
Sbjct: 111 MTNNPGRPIPSDKVKSFSTRDEVDAWLYSDPMRCPGALHFVETNATVISYGLQTNSTPVS 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RG YEDPTFKFQIPLQ+ AERE+ARSL+GDPNF+W    KEFAHP  E FS VA +GPT
Sbjct: 171 KRGHYEDPTFKFQIPLQIVAEREMARSLIGDPNFNWTARFKEFAHPAIEEFSVVAVVGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLA+AMFGFV QISSL+TEKELKLRQ MTMMGLYDSAYWLSWLTWEG ++L++SLFIV+
Sbjct: 231 FFLAIAMFGFVIQISSLITEKELKLRQAMTMMGLYDSAYWLSWLTWEGIIILIASLFIVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFLNNSF+V+FLLFFLF+LNM G+AFM S+FISKSSSST IGF +FI GF +
Sbjct: 291 FGMMFQFDFFLNNSFSVVFLLFFLFQLNMIGYAFMLSSFISKSSSSTIIGFCIFIFGFFS 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QLVT FGFPYS+ F N YR IWSLFPPNLLAEAL LL+DAT TPQD GISWS+RA+CAPN
Sbjct: 351 QLVTIFGFPYSNNFPNFYRIIWSLFPPNLLAEALSLLADATSTPQDPGISWSKRADCAPN 410

Query: 301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKI 360
           D +CVITINDIYIWL ATFF+WF+LAIY DNIIPN++GVRKS FYFLKPGYWTG+GGNK+
Sbjct: 411 DLDCVITINDIYIWLTATFFLWFLLAIYFDNIIPNSSGVRKSLFYFLKPGYWTGRGGNKV 470

Query: 361 EEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTR 420
           E        GS+P +E ITPDDEDVLEEEN VKQQ RE + DPN+AVQI GL KT+PGT 
Sbjct: 471 E--------GSIPSLEDITPDDEDVLEEENKVKQQRREGVADPNIAVQICGLAKTYPGTT 522

Query: 421 KIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478
            IG CCKC+KTSPYHA+KGLWVN  K+QLFCLLGPNGAGKTTTI+CLTGITPVT GD 
Sbjct: 523 NIG-CCKCKKTSPYHALKGLWVNFPKNQLFCLLGPNGAGKTTTINCLTGITPVTEGDA 579

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841474|emb|CAN62102.1| hypothetical protein VITISV_033311 [Vitis vinifera]

 Score =  694 bits (1790), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/478 (76%), Positives = 411/478 (85%), Gaps = 9/478 (1%)

Query: 1   MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
           M NNPGR IPS KV SF T  EVD WLYS+PMRCPGALHFV+ NAT ISYG+QTNSTP+ 
Sbjct: 111 MTNNPGRPIPSDKVKSFSTRDEVDAWLYSDPMRCPGALHFVETNATVISYGLQTNSTPVS 170

Query: 61  MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
            RG YEDPTFKFQIPLQ+ AERE+ARSL+GDPNF+W    KEFAHP  E FS VA +GPT
Sbjct: 171 KRGHYEDPTFKFQIPLQIVAEREMARSLIGDPNFNWTARFKEFAHPAIEEFSVVAVVGPT 230

Query: 121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
           FFLA+AMFGFV QISSL+TEKELKLRQ MTMMGLYDSAYWLSWLTWEG ++L++SLFIV+
Sbjct: 231 FFLAIAMFGFVIQISSLITEKELKLRQAMTMMGLYDSAYWLSWLTWEGIIILIASLFIVL 290

Query: 181 FGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLT 240
           FGMMFQFDFFLNNSF+V+FLLFFLF+LNM G+AFM S+FISKSSSST IGF +FI GF +
Sbjct: 291 FGMMFQFDFFLNNSFSVVFLLFFLFQLNMIGYAFMLSSFISKSSSSTIIGFCIFIFGFFS 350

Query: 241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
           QLVT FGFPYS+ F N YR IWSLFPPNLLAEAL LL+DAT TPQD GISWS+RA+CAPN
Sbjct: 351 QLVTIFGFPYSNNFPNFYRIIWSLFPPNLLAEALSLLADATSTPQDPGISWSKRADCAPN 410

Query: 301 DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKI 360
           D +CVITINDIYIWL ATFF+WF+LAIY DNIIPN++GVRKS FYFLKPGYWTG+GGNK+
Sbjct: 411 DLDCVITINDIYIWLTATFFLWFLLAIYFDNIIPNSSGVRKSLFYFLKPGYWTGRGGNKV 470

Query: 361 EEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTR 420
           E        GS+P +E ITPDDEDVLEEEN VKQQ RE + DPN+AVQI GL KT+PGT 
Sbjct: 471 E--------GSIPSLEDITPDDEDVLEEENKVKQQRREGVADPNIAVQICGLAKTYPGTT 522

Query: 421 KIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478
            IG CCKC+KTSPYHA+KGLWVN  K+QLFCLLGPNGAGKTTTI+CLTGITPVT GD 
Sbjct: 523 NIG-CCKCKKTSPYHALKGLWVNFPKNQLFCLLGPNGAGKTTTINCLTGITPVTEGDA 579

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	479
TAIR|locus:2100367	983	ABCA2 "ATP-binding cassette A2	0.993	0.484	0.667	2.7e-180
UNIPROTKB|E1BKP0	1562	ABCA5 "Uncharacterized protein	0.290	0.088	0.315	5.8e-19
UNIPROTKB|E2R172	1642	ABCA5 "Uncharacterized protein	0.162	0.047	0.344	7.1e-18
UNIPROTKB|Q8WWZ7	1642	ABCA5 "ATP-binding cassette su	0.167	0.048	0.388	1e-17
UNIPROTKB|E7ETD3	1643	ABCA5 "ATP-binding cassette su	0.167	0.048	0.388	1.1e-17
ZFIN|ZDB-GENE-050517-5	1673	abca5 "ATP-binding cassette, s	0.127	0.036	0.444	2.1e-16
UNIPROTKB|K7EPM3	917	ABCA5 "ATP-binding cassette su	0.167	0.087	0.388	3.3e-16
MGI|MGI:2386607	1642	Abca5 "ATP-binding cassette, s	0.183	0.053	0.350	4.6e-16
UNIPROTKB|E1BY40	1646	ABCA5 "Uncharacterized protein	0.131	0.038	0.367	7.6e-16
DICTYBASE|DDB_G0291994	877	abcA1 "ABC transporter A famil	0.210	0.115	0.339	1.5e-15

TAIR|locus:2100367 ABCA2 "ATP-binding cassette A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1750 (621.1 bits), Expect = 2.7e-180, P = 2.7e-180
 Identities = 319/478 (66%), Positives = 371/478 (77%)

Query:     1 MRNNPGRAIPSSKVMSFRTAAEVDDWLYSNPMRCPGALHFVDRNATTISYGIQTNSTPIE 60
             M+NNPGR+IP  KV SF     VD WL +NP+  PGALHF++RNAT ISYGIQTNSTP  
Sbjct:   111 MKNNPGRSIPIEKVRSFVDPEAVDTWLMANPLLVPGALHFIERNATVISYGIQTNSTPEM 170

Query:    61 MRGRYEDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPT 120
              RGR+EDPTFKFQIPLQ+AAEREIARSL+GDPNF+WVVG KEF HP  E   A+  IGPT
Sbjct:   171 NRGRFEDPTFKFQIPLQIAAEREIARSLIGDPNFNWVVGFKEFPHPTIEAIVALDTIGPT 230

Query:   121 FFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI 180
             FFLAVAMFGFV QISSL+TEKELKLRQ MTMMG++D+AYWLSWLTWEG L  +S+L  V+
Sbjct:   231 FFLAVAMFGFVLQISSLITEKELKLRQAMTMMGVFDTAYWLSWLTWEGILTAISALLTVL 290

Query:   181 FGMMFQFDXXXXXXXXXXXXXXXXXXXXMTGXXXXXXXXXXXXXXXXXXXXXXXIVGFLT 240
             FGMMFQFD                    + G                       +VGF+T
Sbjct:   291 FGMMFQFDFFLKNSFPVVFLLFMLFQFNLIGLAFMLSAFISKSTSATTVGFFVFLVGFVT 350

Query:   241 QLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPN 300
             QL T+ GFPY+ ++S   R +WSLFPPN  ++ L+LL+DAT TPQD GISWS+RAEC PN
Sbjct:   351 QLATSSGFPYAKKYSRMIRALWSLFPPNTFSQGLKLLADATSTPQDPGISWSKRAECGPN 410

Query:   301 D-TECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNK 359
             D T CV+TINDIY+WL+ TFF+WF+LA+Y DNI PNA+GVRKS FYFLKPGYWTGKGGN+
Sbjct:   411 DDTGCVLTINDIYLWLLGTFFLWFVLALYFDNITPNASGVRKSIFYFLKPGYWTGKGGNR 470

Query:   360 IEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGT 419
             +EEG ICSC+GSVPP++HITPDDEDVLEEE +VKQ   E + DPNVAVQIRGL KT+PGT
Sbjct:   471 VEEGGICSCIGSVPPVDHITPDDEDVLEEETLVKQHSMEGLVDPNVAVQIRGLAKTYPGT 530

Query:   420 RKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
              K GCC KC+KTSP+HA+KGLW+NIAKDQLFCLLGPNGAGKTTTI+CLTG+ PVTGGD
Sbjct:   531 TKFGCC-KCKKTSPFHALKGLWMNIAKDQLFCLLGPNGAGKTTTINCLTGLFPVTGGD 587

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005215 "transporter activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

UNIPROTKB|E1BKP0 ABCA5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 139 (54.0 bits), Expect = 5.8e-19, Sum P(3) = 5.8e-19
 Identities = 52/165 (31%), Positives = 80/165 (48%)

Query:   236 VGFLTQLVT-AFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRR 294
             VG +  LVT AFGF            +   FPP+L+     LLS   +    IGI+    
Sbjct:   327 VGIVEFLVTVAFGFV------GLLIVLMESFPPSLV----WLLSPFCQCTFLIGIAQVMH 376

Query:   295 AE------CAPNDTE--CVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYF 346
              E         N TE  C + I  + + L + F+   +LA+YLD ++P   G+R+S+FYF
Sbjct:   377 LEDVDEGALVSNLTEGPCPLIIAIMMLILNSIFYA--LLAVYLDQVVPGEFGLRRSSFYF 434

Query:   347 LKPGYWTGKGGN--KIEEGSICSCVGSVPPMEHITPDDEDVLEEE 389
             LKP YW+    N  ++ EG++    G+V   E + P   + + +E
Sbjct:   435 LKPSYWSKSKRNYKELSEGNVN---GNVSFSEIVEPVSSEFIGKE 476

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|E2R172 ABCA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 127 (49.8 bits), Expect = 7.1e-18, Sum P(3) = 7.1e-18
 Identities = 30/87 (34%), Positives = 52/87 (59%)

Query:   305 VITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGN--KIEE 362
             +ITI  + + L + F+V  +LA+YLD +IP   G+R+S+ YFLKP YW+    N  ++ E
Sbjct:   397 IITI--VMLALNSIFYV--LLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKSKRNYKELSE 452

Query:   363 GSICSCVGSVPPMEHITPDDEDVLEEE 389
             G++    G++   E + P   + + +E
Sbjct:   453 GNVN---GNISFSEIVEPVSSEFMGKE 476

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

UNIPROTKB|Q8WWZ7 ABCA5 "ATP-binding cassette sub-family A member 5" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 1.0e-17, Sum P(3) = 1.0e-17
 Identities = 33/85 (38%), Positives = 50/85 (58%)

Query:   305 VITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGS 364
             +ITI  I + L + F+V  +LA+YLD +IP   G+R+S+ YFLKP YW+ K     EE S
Sbjct:   397 IITI--IMLTLNSIFYV--LLAVYLDQVIPGEFGLRRSSLYFLKPSYWS-KSKRNYEELS 451

Query:   365 ICSCVGSVPPMEHITPDDEDVLEEE 389
               +  G++   E I P   + + +E
Sbjct:   452 EGNVNGNISFSEIIEPVSSEFVGKE 476

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0031902 "late endosome membrane" evidence=IEA

GO:0005764 "lysosome" evidence=ISS

GO:0005770 "late endosome" evidence=ISS

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=ISS

GO:0033344 "cholesterol efflux" evidence=ISS

GO:0034375 "high-density lipoprotein particle remodeling" evidence=ISS

GO:0043691 "reverse cholesterol transport" evidence=IC

UNIPROTKB|E7ETD3 ABCA5 "ATP-binding cassette sub-family A member 5" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 1.1e-17, Sum P(3) = 1.1e-17
 Identities = 33/85 (38%), Positives = 50/85 (58%)

Query:   305 VITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGS 364
             +ITI  I + L + F+V  +LA+YLD +IP   G+R+S+ YFLKP YW+ K     EE S
Sbjct:   397 IITI--IMLTLNSIFYV--LLAVYLDQVIPGEFGLRRSSLYFLKPSYWS-KSKRNYEELS 451

Query:   365 ICSCVGSVPPMEHITPDDEDVLEEE 389
               +  G++   E I P   + + +E
Sbjct:   452 EGNVNGNISFSEIIEPVSSEFVGKE 476

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-050517-5 abca5 "ATP-binding cassette, sub-family A (ABC1), member 5" [Danio rerio (taxid:7955)]

 Score = 125 (49.1 bits), Expect = 2.1e-16, Sum P(3) = 2.1e-16
 Identities = 28/63 (44%), Positives = 39/63 (61%)

Query:   120 TFFLAVAMFGFV-FQISSLVTEKELKLRQVMTMMGLYDSAYWLSW-LTWEGTLVLLSSLF 177
             + +L +A   FV F I ++  EKE +L+  M MMGLYDSA+WLSW L +   +  +S L 
Sbjct:   241 SIYLVLAFTPFVSFLIVNVAAEKEQRLKDTMGMMGLYDSAFWLSWGLLYAALVTTMSILM 300

Query:   178 IVI 180
              VI
Sbjct:   301 AVI 303

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|K7EPM3 ABCA5 "ATP-binding cassette sub-family A member 5" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 3.3e-16, Sum P(3) = 3.3e-16
 Identities = 33/85 (38%), Positives = 50/85 (58%)

Query:   305 VITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGS 364
             +ITI  I + L + F+V  +LA+YLD +IP   G+R+S+ YFLKP YW+ K     EE S
Sbjct:   397 IITI--IMLTLNSIFYV--LLAVYLDQVIPGEFGLRRSSLYFLKPSYWS-KSKRNYEELS 451

Query:   365 ICSCVGSVPPMEHITPDDEDVLEEE 389
               +  G++   E I P   + + +E
Sbjct:   452 EGNVNGNISFSEIIEPVSSEFVGKE 476

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:2386607 Abca5 "ATP-binding cassette, sub-family A (ABC1), member 5" [Mus musculus (taxid:10090)]

 Score = 131 (51.2 bits), Expect = 4.6e-16, Sum P(3) = 4.6e-16
 Identities = 34/97 (35%), Positives = 57/97 (58%)

Query:   305 VITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGN--KIEE 362
             +ITI  I + L + F+V  +LA+YLD +IP   G+R+S+ YFLKP YW+    N  ++ E
Sbjct:   397 IITI--IMLALDSVFYV--LLAVYLDQVIPGEFGLRRSSLYFLKPSYWSKNKRNYKELSE 452

Query:   363 GSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRES 399
             G+I    G++   E + P   + + +E +    I++S
Sbjct:   453 GNIN---GNISLNEIVEPVSSEFIGKEAIRISGIQKS 486

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005764 "lysosome" evidence=IDA

GO:0005768 "endosome" evidence=IEA

GO:0005770 "late endosome" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IMP

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IMP

GO:0043691 "reverse cholesterol transport" evidence=IC

UNIPROTKB|E1BY40 ABCA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 116 (45.9 bits), Expect = 7.6e-16, Sum P(3) = 7.6e-16
 Identities = 25/68 (36%), Positives = 40/68 (58%)

Query:   313 IWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGN--KIEEGSI---CS 367
             I LV     + + A+YLD +IP   G+R+S+F+F+KP +W+ +  N  ++ E SI    S
Sbjct:   404 ILLVLDSIFYLLAAVYLDQVIPGEFGLRRSSFFFMKPSFWSKRRKNYEELYESSINGNLS 463

Query:   368 CVGSVPPM 375
             C   V P+
Sbjct:   464 CSEMVEPV 471

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005770 "late endosome" evidence=IEA

GO:0010745 "negative regulation of macrophage derived foam cell differentiation" evidence=IEA

GO:0033344 "cholesterol efflux" evidence=IEA

GO:0034375 "high-density lipoprotein particle remodeling" evidence=IEA

DICTYBASE|DDB_G0291994 abcA1 "ABC transporter A family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 141 (54.7 bits), Expect = 1.5e-15, Sum P(3) = 1.5e-15
 Identities = 36/106 (33%), Positives = 53/106 (50%)

Query:    82 REIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARI-GPTFFLAVAMFGFVFQISSLVTE 140
             ++I    +  P  S+  G   F   P E     AR+ G  F+   +M  F+F +  +  E
Sbjct:   237 QKIRNEKIPPPTISY--GSNAFPRYPPE--QGAARVWGGLFYYCGSMISFIFLLYKVSFE 292

Query:   141 KELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQ 186
             KE KL+Q M MMGL  + YW+SW     T+ +L SL  +I G+  Q
Sbjct:   293 KENKLKQGMVMMGLSVNQYWISWFITSFTIDILISLITIIVGLACQ 338

GO:0005615 "extracellular space" evidence=IDA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=ISS

GO:0006810 "transport" evidence=IEA;ISS

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q84K47	AB2A_ARATH	No assigned EC number	0.7306	0.9958	0.4852	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	ATATH1	ATATH1; ATPase, coupled to transmembrane movement of substances / transporter; member of ATH subfamily (983 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ATNAP5	ATNAP5; ATPase, coupled to transmembrane movement of substances / transporter; member of NAP su [...] (324 aa)							•		0.677
	ABC1At	ATABC1 (ARABIDOPSIS THALIANA ABC TRANSPORTER 1); transporter; Encodes an ABC1-like protein, mem [...] (623 aa)							•		0.623
	AT1G08400	chromosome structural maintenance protein-related; chromosome structural maintenance protein-re [...] (804 aa)							•		0.563
	MAG2	MAG2 (maigo2); Involved in transportation of seed storage proteins from the ER to the vacuole. [...] (795 aa)							•		0.538
	anac053	anac053 (Arabidopsis NAC domain containing protein 53); transcription factor; Arabidopsis NAC d [...] (549 aa)				•					0.513
	AtSec20	AtSec20; AtSec20; FUNCTIONS IN- molecular_function unknown; EXPRESSED IN- 24 plant structures; [...] (293 aa)							•		0.510
	ATZW10	ATZW10; homologous to Drosophila ZW10, a centromere/kinetochore protein involved in chromosome [...] (742 aa)							•		0.435
	CCMH	CCMH; oxidoreductase; Encodes a protein with oxidoreductase activity present in the inner membr [...] (159 aa)							•		0.435
	GCN1	ATGCN1; transporter; member of GCN subfamily (595 aa)							•	•	0.420
	AT5G35690	unknown protein; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- WLM (Inter [...] (603 aa)				•					0.419

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	479
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-23
cd03263	220	cd03263, ABC_subfamily_A, ATP-binding cassette dom	3e-18
pfam12698	278	pfam12698, ABC2_membrane_3, ABC-2 family transport	2e-13
cd03230	173	cd03230, ABC_DR_subfamily_A, ATP-binding cassette	5e-11
cd03265	220	cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist	1e-10
cd03268	208	cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c	3e-10
COG1131	293	COG1131, CcmA, ABC-type multidrug transport system	3e-10
cd03219	236	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas	2e-09
COG0410	237	COG0410, LivF, ABC-type branched-chain amino acid	2e-08
cd03224	222	cd03224, ABC_TM1139_LivF_branched, ATP-binding cas	7e-08
TIGR01188	302	TIGR01188, drrA, daunorubicin resistance ABC trans	8e-08
COG3842	352	COG3842, PotA, ABC-type spermidine/putrescine tran	1e-07
cd03269	210	cd03269, ABC_putative_ATPase, ATP-binding cassette	1e-07
cd03214	180	cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind	1e-07
TIGR01257	2272	TIGR01257, rim_protein, retinal-specific rim ABC t	2e-07
cd03259	213	cd03259, ABC_Carb_Solutes_like, ATP-binding casset	2e-07
cd03216	163	cd03216, ABC_Carb_Monos_I, First domain of the ATP	2e-07
cd00267	157	cd00267, ABC_ATPase, ATP-binding cassette transpor	3e-07
COG3839	338	COG3839, MalK, ABC-type sugar transport systems, A	3e-07
cd03267	236	cd03267, ABC_NatA_like, ATP-binding cassette domai	5e-07
cd03266	218	cd03266, ABC_NatA_sodium_exporter, ATP-binding cas	6e-07
cd03301	213	cd03301, ABC_MalK_N, The N-terminal ATPase domain	8e-07
COG0411	250	COG0411, LivG, ABC-type branched-chain amino acid	1e-06
PRK11300	255	PRK11300, livG, leucine/isoleucine/valine transpor	1e-06
TIGR03410	230	TIGR03410, urea_trans_UrtE, urea ABC transporter,	1e-06
cd03293	220	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c	3e-06
COG1120	258	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore	5e-06
cd03256	241	cd03256, ABC_PhnC_transporter, ATP-binding cassett	5e-06
cd03255	218	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse	6e-06
cd03218	232	cd03218, ABC_YhbG, ATP-binding cassette component	6e-06
TIGR03411	242	TIGR03411, urea_trans_UrtD, urea ABC transporter,	6e-06
COG3845	501	COG3845, COG3845, ABC-type uncharacterized transpo	9e-06
COG4586	325	COG4586, COG4586, ABC-type uncharacterized transpo	9e-06
TIGR03740	223	TIGR03740, galliderm_ABC, gallidermin-class lantib	1e-05
COG4152	300	COG4152, COG4152, ABC-type uncharacterized transpo	1e-05
COG1129	500	COG1129, MglA, ABC-type sugar transport system, AT	2e-05
COG1123	539	COG1123, COG1123, ATPase components of various ABC	2e-05
COG1137	243	COG1137, YhbG, ABC-type (unclassified) transport s	2e-05
COG4674	249	COG4674, COG4674, Uncharacterized ABC-type transpo	2e-05
TIGR02857	529	TIGR02857, CydD, thiol reductant ABC exporter, Cyd	2e-05
cd03235	213	cd03235, ABC_Metallic_Cations, ATP-binding cassett	3e-05
COG3638	258	COG3638, COG3638, ABC-type phosphate/phosphonate t	7e-05
PRK13537	306	PRK13537, PRK13537, nodulation ABC transporter Nod	7e-05
COG4608	268	COG4608, AppF, ABC-type oligopeptide transport sys	9e-05
COG1126	240	COG1126, GlnQ, ABC-type polar amino acid transport	9e-05
cd03229	178	cd03229, ABC_Class3, ATP-binding cassette domain o	1e-04
cd03300	232	cd03300, ABC_PotA_N, ATP-binding cassette domain o	1e-04
cd03264	211	cd03264, ABC_drug_resistance_like, ABC-type multid	1e-04
cd03257	228	cd03257, ABC_NikE_OppD_transporters, ATP-binding c	1e-04
cd03262	213	cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai	2e-04
PRK13636	283	PRK13636, cbiO, cobalt transporter ATP-binding sub	2e-04
TIGR02315	243	TIGR02315, ABC_phnC, phosphonate ABC transporter,	2e-04
pfam01061	210	pfam01061, ABC2_membrane, ABC-2 type transporter	3e-04
cd03220	224	cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon	3e-04
cd03258	233	cd03258, ABC_MetN_methionine_transporter, ATP-bind	5e-04
COG1135	339	COG1135, AbcC, ABC-type metal ion transport system	5e-04
TIGR03864	236	TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi	5e-04
PRK10762	501	PRK10762, PRK10762, D-ribose transporter ATP bindi	6e-04
PRK11607	377	PRK11607, potG, putrescine transporter ATP-binding	6e-04
PRK13548	258	PRK13548, hmuV, hemin importer ATP-binding subunit	6e-04
COG1101	263	COG1101, PhnK, ABC-type uncharacterized transport	7e-04
PRK13536	340	PRK13536, PRK13536, nodulation factor exporter sub	8e-04
COG0488	530	COG0488, Uup, ATPase components of ABC transporter	8e-04
PRK09700	510	PRK09700, PRK09700, D-allose transporter ATP-bindi	0.001
PRK13647	274	PRK13647, cbiO, cobalt transporter ATP-binding sub	0.001
COG1116	248	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon	0.001
TIGR01166	190	TIGR01166, cbiO, cobalt transport protein ATP-bind	0.001
cd03225	211	cd03225, ABC_cobalt_CbiO_domain1, First domain of	0.001
cd03295	242	cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas	0.001
TIGR03771	223	TIGR03771, anch_rpt_ABC, anchored repeat-type ABC	0.001
COG1124	252	COG1124, DppF, ABC-type dipeptide/oligopeptide/nic	0.002
TIGR03522	301	TIGR03522, GldA_ABC_ATP, gliding motility-associat	0.003
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	0.003
COG1118	345	COG1118, CysA, ABC-type sulfate/molybdate transpor	0.004
COG1121	254	COG1121, ZnuC, ABC-type Mn/Zn transport systems, A	0.004
COG4525	259	COG4525, TauB, ABC-type taurine transport system,	0.004
PRK10895	241	PRK10895, PRK10895, lipopolysaccharide ABC transpo	0.004
cd03260	227	cd03260, ABC_PstB_phosphate_transporter, ATP-bindi	0.004
COG4167	267	COG4167, SapF, ABC-type antimicrobial peptide tran	0.004
COG1122	235	COG1122, CbiO, ABC-type cobalt transport system, A	0.004

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score =  104 bits (260), Expect = 2e-23
 Identities = 90/362 (24%), Positives = 152/362 (41%), Gaps = 30/362 (8%)

Query: 116 RIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSS 175
           R  P F +   ++     + S+V EKEL+L++ +   G+ ++  W +W     +++ +S 
Sbjct: 653 RCFPIFMVLAWIYSVSMTVKSIVLEKELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSI 712

Query: 176 LFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFI 235
             + IF M  +     ++ F +LFL    F        F+ S F SK+S +      ++ 
Sbjct: 713 FLLTIFIMHGRI-LHYSDPF-ILFLFLLAFSTATIMQCFLLSTFFSKASLAAACSGVIYF 770

Query: 236 VGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRA 295
             +L  ++    F + D+ +   +T  SL  P       + L    E  Q +G+ WS   
Sbjct: 771 TLYLPHILC---FAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFEE--QGLGLQWSNIG 825

Query: 296 ECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGK 355
                  E    ++   + L A   ++ +LA YLD + P   G     ++ L+  YW G 
Sbjct: 826 NSPLEGDEFSFLLSMKMMLLDAA--LYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGG 883

Query: 356 GGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKT 415
            G    E        ++   E +T + ED    E +        +P     V ++ LVK 
Sbjct: 884 EGCSTREER------ALEKTEPLTEEMEDPEHPEGINDSFFERELPGLVPGVCVKNLVKI 937

Query: 416 F-PGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474
           F P  R               A+  L +   ++Q+   LG NGAGKTTT+S LTG+ P T
Sbjct: 938 FEPSGRP--------------AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPT 983

Query: 475 GG 476
            G
Sbjct: 984 SG 985

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A

 Score = 82.9 bits (206), Expect = 3e-18
 Identities = 28/71 (39%), Positives = 36/71 (50%), Gaps = 13/71 (18%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +QIR L KT+    K              A+  L +N+ K ++F LLG NGAGKTTT+  
Sbjct: 1   LQIRNLTKTYKKGTK-------------PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKM 47

Query: 467 LTGITPVTGGD 477
           LTG    T G 
Sbjct: 48  LTGELRPTSGT 58

The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220

>gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 41/263 (15%), Positives = 85/263 (32%), Gaps = 38/263 (14%)

Query: 66  EDPTFKFQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAV 125
             P  K    +    E   A+  + +   +      E              +       +
Sbjct: 54  ASPEVKVAQKVDSEEE---AKKALKNAPVNV-----EITPLFNPNSGYAYYLLGLLLFLL 105

Query: 126 AMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMF 185
            + G +    S+V EKE ++++ + + G+    Y L  +  +  + L+  L I++   +F
Sbjct: 106 ILIGALIIALSIVEEKESRIKERLLVSGVSPLKYLLGKILGDLLVGLIQLLIILLL--LF 163

Query: 186 QFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFLTQLVTA 245
                  N    L LLF L+ L       +  +    S ++  +   + I+  L      
Sbjct: 164 GLGIPFGNLLL-LLLLFLLYGLAYIALGALLGSLFKNSEAAILV---ISILILLLSGFFG 219

Query: 246 FGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECV 305
             FP  +   +  + I+S+ P     + L  +        +I +S               
Sbjct: 220 GLFPLPN-MPSFLQWIFSIIPFFAPIDGLLRI--IYGDLAEILLSL-------------- 262

Query: 306 ITINDIYIWLVATFFVWFILAIY 328
                  I L+    V  +LA+ 
Sbjct: 263 -------IILLLFGVVLLLLALL 278

This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278

>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A

 Score = 60.9 bits (149), Expect = 5e-11
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 15/71 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++R L K +                   A+  + + + K +++ LLGPNGAGKTT I  
Sbjct: 1   IEVRNLSKRYGKK---------------TALDDISLTVEKGEIYGLLGPNGAGKTTLIKI 45

Query: 467 LTGITPVTGGD 477
           + G+     G+
Sbjct: 46  ILGLLKPDSGE 56

This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173

>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 15/72 (20%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  LVK +                   A++G+   + + ++F LLGPNGAGKTTTI  
Sbjct: 1   IEVENLVKKYGDFE---------------AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKM 45

Query: 467 LTGITPVTGGDG 478
           LT +   T G  
Sbjct: 46  LTTLLKPTSGRA 57

DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter

 Score = 59.2 bits (144), Expect = 3e-10
 Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 15/71 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++   L KT+ G +                +  + +++ K +++  LGPNGAGKTTT+  
Sbjct: 1   LKTNDLTKTY-GKK--------------RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKI 45

Query: 467 LTGITPVTGGD 477
           + G+     G+
Sbjct: 46  ILGLIKPDSGE 56

The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208

>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 14/72 (19%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            +++R L K + G +               A+ G+   +   ++F LLGPNGAGKTT + 
Sbjct: 4   VIEVRNLTKKYGGDKT--------------ALDGVSFEVEPGEIFGLLGPNGAGKTTLLK 49

Query: 466 CLTGITPVTGGD 477
            L G+   T G+
Sbjct: 50  ILAGLLKPTSGE 61

Length = 293

>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system

 Score = 57.4 bits (140), Expect = 2e-09
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
           ++RGL K F G                 A+  +  ++   ++  L+GPNGAGKTT  + +
Sbjct: 2   EVRGLTKRFGGL---------------VALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLI 46

Query: 468 TGITPVTGG 476
           +G    T G
Sbjct: 47  SGFLRPTSG 55

The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236

>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 54.8 bits (133), Expect = 2e-08
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
            A++G+ + + + ++  LLG NGAGKTT +  + G+     G
Sbjct: 17  QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSG 58

Length = 237

>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter

 Score = 52.4 bits (127), Expect = 7e-08
 Identities = 14/43 (32%), Positives = 24/43 (55%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
              + G+ + + + ++  LLG NGAGKTT +  + G+ P   G
Sbjct: 13  SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG 55

LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222

>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit

 Score = 53.5 bits (129), Expect = 8e-08
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
           A+ G+   + + ++F  LGPNGAGKTTTI  LT +   T G
Sbjct: 8   AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG 48

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302

>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

 Score = 53.4 bits (129), Expect = 1e-07
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 15/75 (20%)

Query: 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTT 462
           P  A++IR + K+F                   A+  + ++I K +   LLGP+G GKTT
Sbjct: 2   PKPALEIRNVSKSFGDFT---------------AVDDISLDIKKGEFVTLLGPSGCGKTT 46

Query: 463 TISCLTGITPVTGGD 477
            +  + G    + G+
Sbjct: 47  LLRMIAGFEQPSSGE 61

Length = 352

>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
              A+  +  ++ K ++F LLGPNGAGKTTTI  + GI     G
Sbjct: 12  RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSG 55

This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210

>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins

 Score = 50.9 bits (123), Expect = 1e-07
 Identities = 14/41 (34%), Positives = 25/41 (60%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           +  L ++I   ++  +LGPNGAGK+T +  L G+   + G+
Sbjct: 15  LDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGE 55

ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180

>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter

 Score = 53.9 bits (129), Expect = 2e-07
 Identities = 39/106 (36%), Positives = 53/106 (50%), Gaps = 18/106 (16%)

Query: 373  PPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTS 432
            P  E I  +D+DV EE    +Q+I       ++ +++  L K + GT           +S
Sbjct: 1909 PAKEPIFDEDDDVAEE----RQRIISGGNKTDI-LRLNELTKVYSGT-----------SS 1952

Query: 433  PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG 478
            P  A+  L V +   + F LLG NGAGKTTT   LTG T VT GD 
Sbjct: 1953 P--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272

>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 15/71 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++GL KT+   R               A+  L + +   +   LLGP+G GKTT +  
Sbjct: 1   LELKGLSKTYGSVR---------------ALDDLSLTVEPGEFLALLGPSGCGKTTLLRL 45

Query: 467 LTGITPVTGGD 477
           + G+     G+
Sbjct: 46  IAGLERPDSGE 56

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213

>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system

 Score = 50.1 bits (121), Expect = 2e-07
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 15/71 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++RG+ K F G                 A+ G+ +++ + ++  LLG NGAGK+T +  
Sbjct: 1   LELRGITKRFGGV---------------KALDGVSLSVRRGEVHALLGENGAGKSTLMKI 45

Query: 467 LTGITPVTGGD 477
           L+G+     G+
Sbjct: 46  LSGLYKPDSGE 56

This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163

>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain

 Score = 49.9 bits (120), Expect = 3e-07
 Identities = 12/43 (27%), Positives = 25/43 (58%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
            A+  + + +   ++  L+GPNG+GK+T +  + G+   T G+
Sbjct: 13  TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE 55

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157

>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 15/72 (20%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            ++++ + K+F                    +K + ++I   +   LLGP+G GK+T + 
Sbjct: 3   ELELKNVRKSFGSF---------------EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLR 47

Query: 466 CLTGITPVTGGD 477
            + G+   T G+
Sbjct: 48  MIAGLEEPTSGE 59

Length = 338

>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 19/42 (45%), Positives = 28/42 (66%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           A+KG+   I K ++   +GPNGAGKTTT+  L+G+   T G+
Sbjct: 36  ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGE 77

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236

>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 12/70 (17%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +    L K F   +K              A+ G+   +   ++  LLGPNGAGKTTT+  
Sbjct: 2   ITADALTKRFRDVKK-----------TVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRM 50

Query: 467 LTG-ITPVTG 475
           L G + P  G
Sbjct: 51  LAGLLEPDAG 60

NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218

>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 15/71 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           V++  + K F                   A+  L ++IA  +   LLGP+G GKTTT+  
Sbjct: 1   VELENVTKRFGNV---------------TALDDLNLDIADGEFVVLLGPSGCGKTTTLRM 45

Query: 467 LTGITPVTGGD 477
           + G+   T G 
Sbjct: 46  IAGLEEPTSGR 56

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213

>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
           ++RGL K F G                 A+  + + +   ++  L+GPNGAGKTT  + +
Sbjct: 6   EVRGLSKRFGGL---------------TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLI 50

Query: 468 TGITPVTGG 476
           TG    + G
Sbjct: 51  TGFYKPSSG 59

Length = 250

>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           A+  + + + + ++  L+GPNGAGKTT  +CLTG    TGG 
Sbjct: 20  AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGT 61

Length = 255

>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE

 Score = 49.1 bits (118), Expect = 1e-06
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
           H ++G+ + + K ++ C+LG NG GKTT +  L G+ PV  G
Sbjct: 14  HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230

>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 15/70 (21%), Positives = 34/70 (48%), Gaps = 11/70 (15%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++R + KT+ G                 A++ + +++ + +   L+GP+G GK+T +  
Sbjct: 1   LEVRNVSKTYGG-----------GGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRI 49

Query: 467 LTGITPVTGG 476
           + G+   T G
Sbjct: 50  IAGLERPTSG 59

NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220

>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 15/41 (36%), Positives = 25/41 (60%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           +  L  +I K ++  +LGPNG+GK+T + CL G+     G+
Sbjct: 18  LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGE 58

Length = 258

>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system

 Score = 47.2 bits (113), Expect = 5e-06
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 14/69 (20%)

Query: 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
           ++  L KT+P  +               A+K + ++I   +   L+GP+GAGK+T + CL
Sbjct: 2   EVENLSKTYPNGK--------------KALKDVSLSINPGEFVALIGPSGAGKSTLLRCL 47

Query: 468 TGITPVTGG 476
            G+   T G
Sbjct: 48  NGLVEPTSG 56

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241

>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein

 Score = 46.7 bits (112), Expect = 6e-06
 Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 11/71 (15%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++ L KT+ G  +              A+KG+ ++I K +   ++GP+G+GK+T ++ 
Sbjct: 1   IELKNLSKTYGGGGE-----------KVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNI 49

Query: 467 LTGITPVTGGD 477
           L G+   T G+
Sbjct: 50  LGGLDRPTSGE 60

This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218

>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 15/68 (22%)

Query: 409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT 468
              L K + G RK+              + G+ +++ + ++  LLGPNGAGKTTT   + 
Sbjct: 3   AENLSKRY-GKRKV--------------VNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIV 47

Query: 469 GITPVTGG 476
           G+     G
Sbjct: 48  GLVKPDSG 55

The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232

>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD

 Score = 47.2 bits (113), Expect = 6e-06
 Identities = 16/44 (36%), Positives = 25/44 (56%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           + A+  L + +   +L  ++GPNGAGKTT +  +TG T    G 
Sbjct: 15  FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGS 58

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242

>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

 Score = 47.9 bits (115), Expect = 9e-06
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 15/72 (20%)

Query: 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
            A+++RG+ K FPG                 A   + +++ K ++  LLG NGAGK+T +
Sbjct: 3   PALEMRGITKRFPGV---------------VANDDVSLSVKKGEIHALLGENGAGKSTLM 47

Query: 465 SCLTGITPVTGG 476
             L G+     G
Sbjct: 48  KILFGLYQPDSG 59

Length = 501

>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 47.0 bits (112), Expect = 9e-06
 Identities = 18/47 (38%), Positives = 26/47 (55%)

Query: 430 KTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
           K     A++ +   I K ++   LG NGAGK+TT+  LTG+   T G
Sbjct: 33  KERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG 79

Length = 325

>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 17/42 (40%), Positives = 27/42 (64%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
            A+  + + + K+ ++ LLGPNGAGK+T +  +TGI   T G
Sbjct: 14  TAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG 55

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223

>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 15/71 (21%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
           A++I G+ K+F G                 A+  +   +   ++F LLGPNGAGKTTT  
Sbjct: 2   ALEIEGVTKSF-GD--------------KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFR 46

Query: 466 CLTGITPVTGG 476
            + G+   T G
Sbjct: 47  MILGLLEPTEG 57

Length = 300

>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

 Score = 46.7 bits (112), Expect = 2e-05
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 15/78 (19%)

Query: 399 SIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGA 458
                   +++RG+ K+F G                 A+ G+ + +   ++  LLG NGA
Sbjct: 1   MTMSTPPLLELRGISKSFGGV---------------KALDGVSLTVRPGEVHALLGENGA 45

Query: 459 GKTTTISCLTGITPVTGG 476
           GK+T +  L+G+ P   G
Sbjct: 46  GKSTLMKILSGVYPPDSG 63

Length = 500

>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 4/81 (4%)

Query: 397 RESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPN 456
           R         + +R L K +   + +      ++     A+  +  ++ + +   L+G +
Sbjct: 271 RRGPLRAEPLLSVRNLSKRYGSRKGLFV----RERGEVKAVDDVSFDLREGETLGLVGES 326

Query: 457 GAGKTTTISCLTGITPVTGGD 477
           G+GK+T    L G+ P + G 
Sbjct: 327 GSGKSTLARILAGLLPPSSGS 347

Length = 539

>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 15/74 (20%)

Query: 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTT 462
               +    L K++   RK+              +  + + +   ++  LLGPNGAGKTT
Sbjct: 1   DMSTLVAENLAKSY-KKRKV--------------VNDVSLEVNSGEIVGLLGPNGAGKTT 45

Query: 463 TISCLTGITPVTGG 476
           T   + G+     G
Sbjct: 46  TFYMIVGLVRPDSG 59

Length = 243

>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 17/43 (39%), Positives = 25/43 (58%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
           + A+  L  ++   +L  L+GPNGAGKTT +  +TG T    G
Sbjct: 18  FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEG 60

Length = 249

>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 20/92 (21%), Positives = 36/92 (39%), Gaps = 14/92 (15%)

Query: 385 VLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNI 444
           VL+               P  +++  G+   +PG R               A++ +   +
Sbjct: 300 VLDAAPRPLAGKAPVTAAPAPSLEFSGVSVAYPGRRP--------------ALRPVSFTV 345

Query: 445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
              +   L+GP+GAGK+T ++ L G    T G
Sbjct: 346 PPGERVALVGPSGAGKSTLLNLLLGFVDPTEG 377

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529

>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 11/43 (25%), Positives = 23/43 (53%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
           +  ++ +   +   +   ++GPNGAGK+T +  + G+   T G
Sbjct: 12  HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG 54

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213

>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 14/72 (19%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            ++++ L KT+PG  +              A+K + + I + ++  ++GP+GAGK+T + 
Sbjct: 3   MIEVKNLSKTYPGGHQ--------------ALKDVNLEINQGEMVAIIGPSGAGKSTLLR 48

Query: 466 CLTGITPVTGGD 477
            L G+   T G+
Sbjct: 49  SLNGLVDPTSGE 60

Length = 258

>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional

 Score = 44.4 bits (105), Expect = 7e-05
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT 471
           + GL  ++ + + F LLGPNGAGKTTT+  L G+T
Sbjct: 23  VDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLT 57

Length = 306

>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 6/74 (8%)

Query: 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTT 462
               ++++ L K FP  +  G      K     A+ G+  +I + +   L+G +G GK+T
Sbjct: 1   MEPLLEVKNLKKYFPVGKGFG------KKRYVKAVDGVSFSIKEGETLGLVGESGCGKST 54

Query: 463 TISCLTGITPVTGG 476
               + G+   T G
Sbjct: 55  LGRLILGLEEPTSG 68

Length = 268

>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

 Score = 43.7 bits (104), Expect = 9e-05
 Identities = 17/71 (23%), Positives = 35/71 (49%), Gaps = 15/71 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++I+ L K+F                    +KG+ +++ K ++  ++GP+G+GK+T + C
Sbjct: 3   IEIKNLSKSF---------------GDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRC 47

Query: 467 LTGITPVTGGD 477
           L G+     G 
Sbjct: 48  LNGLEEPDSGS 58

Length = 240

>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 14/71 (19%), Positives = 31/71 (43%), Gaps = 15/71 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++ + K +                    +  + +NI   ++  LLGP+G+GK+T + C
Sbjct: 1   LELKNVSKRYGQK---------------TVLNDVSLNIEAGEIVALLGPSGSGKSTLLRC 45

Query: 467 LTGITPVTGGD 477
           + G+     G 
Sbjct: 46  IAGLEEPDSGS 56

This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178

>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 16/43 (37%), Positives = 26/43 (60%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
            A+ G+ ++I + + F LLGP+G GKTT +  + G    T G+
Sbjct: 14  VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGE 56

PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232

>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 15/28 (53%), Positives = 20/28 (71%)

Query: 449 LFCLLGPNGAGKTTTISCLTGITPVTGG 476
           ++ LLGPNGAGKTT +  L  +TP + G
Sbjct: 27  MYGLLGPNGAGKTTLMRILATLTPPSSG 54

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211

>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++ L  +FP                  A+  +  +I K +   L+G +G+GK+T    
Sbjct: 2   LEVKNLSVSFPT-----------GGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARA 50

Query: 467 LTGITPVTGG 476
           + G+   T G
Sbjct: 51  ILGLLKPTSG 60

The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228

>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters

 Score = 42.5 bits (101), Expect = 2e-04
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 15/71 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++I+ L K+F                 +H +KG+ + + K ++  ++GP+G+GK+T + C
Sbjct: 1   IEIKNLHKSF---------------GDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRC 45

Query: 467 LTGITPVTGGD 477
           +  +     G 
Sbjct: 46  INLLEEPDSGT 56

HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213

>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 1/42 (2%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI-TPVTG 475
           HA+KG+ +NI K ++  +LG NGAGK+T    L GI  P +G
Sbjct: 20  HALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG 61

Length = 283

>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 14/71 (19%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  L K +P  +               A+K + +NI   +   ++GP+GAGK+T + C
Sbjct: 2   LEVENLSKVYPNGK--------------QALKNINLNINPGEFVAIIGPSGAGKSTLLRC 47

Query: 467 LTGITPVTGGD 477
           +  +   + G 
Sbjct: 48  INRLVEPSSGS 58

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243

>gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 5/130 (3%)

Query: 112 SAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYD-SAYWLSWLTWEGTL 170
             + R G  FF  +          S V  +E  + +      LY  SAY L+ +  E  +
Sbjct: 48  GGLNRPGLLFFSILFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPI 107

Query: 171 VLLSS-LFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTI 229
            LL + +F++I   M        + F +  L+  L  L  +G     +A       ++ I
Sbjct: 108 SLLQAIIFLLIVYFMVGLPV---SRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQI 164

Query: 230 GFSVFIVGFL 239
           G  + +   L
Sbjct: 165 GPLLLLPLLL 174

Length = 210

>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 19/78 (24%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 407 VQIRGLVKTFP-------GTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAG 459
           +++  + K++P         +K+G   +  +   + A+K +   + + +   L+G NGAG
Sbjct: 1   IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60

Query: 460 KTTTISCLTGITPVTGGD 477
           K+T +  L GI P   G 
Sbjct: 61  KSTLLRLLAGIYPPDSGT 78

The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224

>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter

 Score = 41.4 bits (98), Expect = 5e-04
 Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 12/70 (17%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++ + K F  T                A+K + +++ K ++F ++G +GAGK+T I C
Sbjct: 2   IELKNVSKVFGDTGGKV-----------TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRC 50

Query: 467 LTGI-TPVTG 475
           + G+  P +G
Sbjct: 51  INGLERPTSG 60

MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233

>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 11/70 (15%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  + KTF  T           T    A+  + + I K ++F ++G +GAGK+T +  
Sbjct: 2   IELENVSKTFGQTG----------TGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRL 51

Query: 467 LTGI-TPVTG 475
           +  +  P +G
Sbjct: 52  INLLERPTSG 61

Length = 339

>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470
           A+  +   +   +   LLGPNGAGK+T  S LT +
Sbjct: 16  ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRL 50

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236

>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 15/63 (23%)

Query: 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
           Q++G+ K FPG +               A+ G  +N+   ++  L+G NGAGK+T +  L
Sbjct: 6   QLKGIDKAFPGVK---------------ALSGAALNVYPGRVMALVGENGAGKSTMMKVL 50

Query: 468 TGI 470
           TGI
Sbjct: 51  TGI 53

Length = 501

>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional

 Score = 41.7 bits (98), Expect = 6e-04
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 23/89 (25%)

Query: 396 IRESIPDPNVAVQ--------IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKD 447
           + ++IP P    +        IR L K+F G                HA+  + + I K 
Sbjct: 1   MNDAIPRPQAKTRKALTPLLEIRNLTKSFDGQ---------------HAVDDVSLTIYKG 45

Query: 448 QLFCLLGPNGAGKTTTISCLTGITPVTGG 476
           ++F LLG +G GK+T +  L G    T G
Sbjct: 46  EIFALLGASGCGKSTLLRMLAGFEQPTAG 74

Length = 377

>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional

 Score = 40.9 bits (97), Expect = 6e-04
 Identities = 13/25 (52%), Positives = 20/25 (80%), Gaps = 1/25 (4%)

Query: 452 LLGPNGAGKTTTISCLTG-ITPVTG 475
           +LGPNGAGK+T +  L+G ++P +G
Sbjct: 33  ILGPNGAGKSTLLRALSGELSPDSG 57

Length = 258

>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only]

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 15/41 (36%), Positives = 24/41 (58%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
           A+ GL + IA+     ++G NGAGK+T ++ + G    T G
Sbjct: 21  ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61

Length = 263

>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 15/74 (20%)

Query: 403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTT 462
             VA+ + G+ K++    K               + GL   +A  + F LLGPNGAGK+T
Sbjct: 38  STVAIDLAGVSKSYGD--KA-------------VVNGLSFTVASGECFGLLGPNGAGKST 82

Query: 463 TISCLTGITPVTGG 476
               + G+T    G
Sbjct: 83  IARMILGMTSPDAG 96

Length = 340

>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 14/102 (13%)

Query: 375 MEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPY 434
           +E    ++  V E + +  +          + ++   + K + G R +            
Sbjct: 290 LEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLL------------ 337

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
             +K L   I +     ++GPNGAGK+T +  L G      G
Sbjct: 338 --LKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377

Length = 530

>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional

 Score = 41.3 bits (97), Expect = 0.001
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 15/70 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           + + G+ K+F                P HA+K + + +   ++  LLG NGAGK+T +  
Sbjct: 6   ISMAGIGKSFG---------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKV 50

Query: 467 LTGITPVTGG 476
           L+GI   T G
Sbjct: 51  LSGIHEPTKG 60

Length = 510

>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 18/36 (50%), Positives = 24/36 (66%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI 470
            A+KGL ++I +     LLGPNGAGK+T +  L GI
Sbjct: 19  KALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGI 54

Length = 274

>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 40.2 bits (95), Expect = 0.001
 Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 15/72 (20%)

Query: 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
             ++I G+ K+F G                  ++ + +++ K +   +LGP+G GK+T +
Sbjct: 2   ALLEIEGVSKSFGG---------------VEVLEDINLSVEKGEFVAILGPSGCGKSTLL 46

Query: 465 SCLTGITPVTGG 476
             + G+   T G
Sbjct: 47  RLIAGLEKPTSG 58

Length = 248

>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit

 Score = 39.7 bits (93), Expect = 0.001
 Identities = 15/41 (36%), Positives = 22/41 (53%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
            +KGL     + ++  LLG NGAGK+T +  L G+     G
Sbjct: 7   VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSG 47

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190

>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system

 Score = 40.1 bits (95), Expect = 0.001
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           A+  + + I K +   ++GPNG+GK+T +  L G+   T G+
Sbjct: 16  ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGE 57

Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211

>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter

 Score = 40.0 bits (94), Expect = 0.001
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 14/58 (24%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
           ++   + K + G +K              A+  L + IAK +   L+GP+G+GKTTT+
Sbjct: 1   IEFENVTKRYGGGKK--------------AVNNLNLEIAKGEFLVLIGPSGSGKTTTM 44

OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242

>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
           K +L  LLGPNGAGKTT +  + G+ P   G
Sbjct: 5   KGELLGLLGPNGAGKTTLLRAILGLIPPAKG 35

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223

>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

 Score = 39.9 bits (94), Expect = 0.002
 Identities = 14/72 (19%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            + +R L   + G               +HA+  + + I + +   ++G +G+GK+T   
Sbjct: 3   LLSVRNLSIVYGG-----------GKFAFHALNNVSLEIERGETLGIVGESGSGKSTLAR 51

Query: 466 CLTGITPVTGGD 477
            L G+   + G 
Sbjct: 52  LLAGLEKPSSGS 63

Length = 252

>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA

 Score = 39.4 bits (92), Expect = 0.003
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
           A+  +     K ++   LGPNGAGK+TT+  +TG  P   G
Sbjct: 17  ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG 57

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 39.1 bits (92), Expect = 0.003
 Identities = 12/24 (50%), Positives = 19/24 (79%)

Query: 452 LLGPNGAGKTTTISCLTGITPVTG 475
           L+GPNGAGK+T ++ + G+ P +G
Sbjct: 27  LVGPNGAGKSTLLARMAGLLPGSG 50

Length = 248

>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 39.3 bits (92), Expect = 0.004
 Identities = 14/43 (32%), Positives = 25/43 (58%)

Query: 434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
           + A+  + ++I   +L  LLGP+GAGK+T +  + G+     G
Sbjct: 15  FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAG 57

Length = 345

>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

 Score = 38.7 bits (91), Expect = 0.004
 Identities = 13/42 (30%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG-ITPVTG 475
             ++ + +++ K ++  L+GPNGAGK+T +  + G + P +G
Sbjct: 18  PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG 59

Length = 254

>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 17/44 (38%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG-ITPVTG 475
           P  A++ + + IA  +L  +LGP+G GKTT ++ + G +TP  G
Sbjct: 17  PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG 60

Length = 259

>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 16/35 (45%), Positives = 21/35 (60%)

Query: 442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
           + +   ++  LLGPNGAGKTTT   + GI P   G
Sbjct: 24  LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG 58

Length = 241

>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 6/47 (12%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI------TPVTG 475
           HA+K + ++I K ++  L+GP+G GK+T +  L  +       P  G
Sbjct: 14  HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60

Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227

>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

 Score = 38.6 bits (90), Expect = 0.004
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 6/71 (8%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++R L KTF     +       +     A+K +   + + Q   ++G NG+GK+T    
Sbjct: 5   LEVRNLSKTFRYRTGL------FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKM 58

Query: 467 LTGITPVTGGD 477
           L G+   T G+
Sbjct: 59  LAGMIEPTSGE 69

Length = 267

>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

 Score = 38.4 bits (90), Expect = 0.004
 Identities = 16/41 (39%), Positives = 25/41 (60%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
           A+K + + I K +   L+GPNG+GK+T +  L G+   T G
Sbjct: 19  ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG 59

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	479
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	100.0
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	99.73
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	99.69
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.68
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	99.66
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	99.63
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.63
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.6
PRK13537	306	nodulation ABC transporter NodI; Provisional	99.59
PRK13536	340	nodulation factor exporter subunit NodI; Provision	99.58
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.56
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.54
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	99.54
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	99.52
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.52
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	99.51
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	99.5
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	99.5
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	99.5
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.49
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	99.48
PF12698	344	ABC2_membrane_3: ABC-2 family transporter protein;	99.47
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	99.47
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	99.46
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.46
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.46
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.46
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	99.46
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.45
COG3638	258	ABC-type phosphate/phosphonate transport system, A	99.45
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	99.45
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.45
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.45
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.45
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.44
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.44
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	99.44
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.44
PLN03140	1470	ABC transporter G family member; Provisional	99.44
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.44
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	99.44
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.44
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	99.43
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.43
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.43
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.43
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	99.43
PRK10908	222	cell division protein FtsE; Provisional	99.43
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.43
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.43
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.42
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.42
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.42
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.42
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	99.42
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.42
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.42
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.42
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	99.42
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.42
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.42
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	99.41
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	99.41
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	99.41
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.41
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.41
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.41
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	99.41
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.41
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.41
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.41
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.41
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.41
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.4
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.4
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.4
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.4
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.4
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.4
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.4
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.4
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.4
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.4
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.4
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.4
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.4
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	99.4
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.4
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.4
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.4
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	99.4
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.39
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	99.39
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.39
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.39
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	99.39
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.39
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.39
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.39
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.39
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.38
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.38
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.38
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.38
cd03246	173	ABCC_Protease_Secretion This family represents the	99.38
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.38
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.38
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.38
COG1127	263	Ttg2A ABC-type transport system involved in resist	99.38
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.38
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.38
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	99.38
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.38
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	99.38
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.38
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.38
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.38
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.37
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	99.37
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.37
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.37
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.37
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.37
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.37
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	99.36
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.36
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.36
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.36
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.36
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.36
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.36
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.35
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.35
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.35
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.34
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.34
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.34
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	99.34
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.34
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.34
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.34
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.33
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	99.33
COG2884	223	FtsE Predicted ATPase involved in cell division [C	99.33
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.33
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.33
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.33
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.33
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.33
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.33
PRK10938	490	putative molybdenum transport ATP-binding protein	99.33
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.33
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.33
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.33
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	99.32
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.32
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.32
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.32
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.32
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.32
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.31
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.31
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.31
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.31
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.31
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.31
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.31
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.3
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.3
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.3
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.3
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.3
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.3
COG1123	539	ATPase components of various ABC-type transport sy	99.3
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.3
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.3
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.3
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.29
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.29
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.29
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.29
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.28
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.28
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.28
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.28
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.28
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.28
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.27
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.27
PRK11147	635	ABC transporter ATPase component; Reviewed	99.27
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.27
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.27
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.27
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.27
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.27
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.27
PRK11147	635	ABC transporter ATPase component; Reviewed	99.27
PRK10938	490	putative molybdenum transport ATP-binding protein	99.26
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.26
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.26
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	99.26
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.26
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.25
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.24
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.24
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.23
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.23
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.21
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.21
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.21
PLN03073	718	ABC transporter F family; Provisional	99.2
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.2
COG0488	530	Uup ATPase components of ABC transporters with dup	99.17
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.15
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.14
PRK13409	590	putative ATPase RIL; Provisional	99.13
PRK13409	590	putative ATPase RIL; Provisional	99.12
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.12
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.11
PLN03073	718	ABC transporter F family; Provisional	99.1
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.1
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.08
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.07
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.06
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.06
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.06
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.06
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.06
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.05
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.05
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.05
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.05
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.05
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.05
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.04
PLN03211	659	ABC transporter G-25; Provisional	99.04
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.04
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.03
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.03
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.03
COG0488	530	Uup ATPase components of ABC transporters with dup	99.03
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.03
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.02
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.01
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.0
COG4988	559	CydD ABC-type transport system involved in cytochr	98.99
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.99
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.98
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	98.98
COG4181	228	Predicted ABC-type transport system involved in ly	98.96
COG4987	573	CydC ABC-type transport system involved in cytochr	98.96
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.95
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.94
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.94
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.94
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.93
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.9
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	98.89
COG1123	539	ATPase components of various ABC-type transport sy	98.88
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	98.87
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.87
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.86
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.8
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.8
PLN03130	1622	ABC transporter C family member; Provisional	98.79
PLN03232	1495	ABC transporter C family member; Provisional	98.77
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.77
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.76
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.76
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	98.75
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	98.75
PTZ00243	1560	ABC transporter; Provisional	98.73
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	98.71
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	98.7
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	98.7
PLN03140	1470	ABC transporter G family member; Provisional	98.69
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	98.67
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.66
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	98.66
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.64
COG4598	256	HisP ABC-type histidine transport system, ATPase c	98.61
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.6
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	98.57
PTZ00243	1560	ABC transporter; Provisional	98.56
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	98.51
PLN03232	1495	ABC transporter C family member; Provisional	98.49
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.47
PLN03130	1622	ABC transporter C family member; Provisional	98.46
COG4172	534	ABC-type uncharacterized transport system, duplica	98.44
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	98.43
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	98.42
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.28
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	98.26
KOG0054	1381	consensus Multidrug resistance-associated protein/	98.26
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.25
KOG0927	614	consensus Predicted transporter (ABC superfamily)	98.19
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	98.16
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.11
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	98.1
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.1
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.08
COG4172	534	ABC-type uncharacterized transport system, duplica	98.04
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	98.03
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	98.0
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	97.98
PRK07594	433	type III secretion system ATPase SsaN; Validated	97.97
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	97.96
KOG0054	1381	consensus Multidrug resistance-associated protein/	97.96
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	97.9
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	97.89
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	97.89
PRK08149	428	ATP synthase SpaL; Validated	97.88
PRK09099	441	type III secretion system ATPase; Provisional	97.86
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.85
PRK09862	506	putative ATP-dependent protease; Provisional	97.84
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	97.81
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	97.81
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.81
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	97.79
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	97.79
KOG0062	582	consensus ATPase component of ABC transporters wit	97.78
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.77
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.77
PRK05922	434	type III secretion system ATPase; Validated	97.76
TIGR03497	413	FliI_clade2 flagellar protein export ATPase FliI.	97.76
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	97.75
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	97.74
COG4178	604	ABC-type uncharacterized transport system, permeas	97.71
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	97.71
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.71
TIGR03496	411	FliI_clade1 flagellar protein export ATPase FliI.	97.71
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	97.7
PRK06315	442	type III secretion system ATPase; Provisional	97.66
PRK07960	455	fliI flagellum-specific ATP synthase; Validated	97.61
PRK08472	434	fliI flagellum-specific ATP synthase; Validated	97.6
PRK10416	318	signal recognition particle-docking protein FtsY;	97.59
PRK06936	439	type III secretion system ATPase; Provisional	97.59
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.58
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.57
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	97.56
PRK06820	440	type III secretion system ATPase; Validated	97.52
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.5
TIGR00025	232	Mtu_efflux ABC transporter efflux protein, DrrB fa	97.48
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	97.43
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.42
TIGR01247	236	drrB daunorubicin resistance ABC transporter membr	97.41
PRK00098	298	GTPase RsgA; Reviewed	97.37
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	97.34
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	97.32
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.32
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	97.29
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.29
COG3845	501	ABC-type uncharacterized transport systems, ATPase	97.26
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	97.21
PRK01889	356	GTPase RsgA; Reviewed	97.19
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	97.17
TIGR00767	415	rho transcription termination factor Rho. Members	97.13
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	97.12
TIGR01291	253	nodJ ABC-2 type transporter, NodJ family. Nearly a	97.1
TIGR00368	499	Mg chelatase-related protein. The N-terminal end m	97.09
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	97.09
PRK00635	1809	excinuclease ABC subunit A; Provisional	97.02
PLN02796	347	D-glycerate 3-kinase	97.0
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	96.98
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	96.97
PRK08927	442	fliI flagellum-specific ATP synthase; Validated	96.95
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.88
TIGR01248	152	drrC daunorubicin resistance protein C. The model	96.84
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	96.78
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	96.72
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	96.65
KOG0062	582	consensus ATPase component of ABC transporters wit	96.64
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.59
TIGR03861	253	phenyl_ABC_PedC alcohol ABC transporter, permease	96.55
TIGR03518	240	ABC_perm_GldF gliding motility-associated ABC tran	96.48
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	96.39
PRK15494	339	era GTPase Era; Provisional	96.36
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	96.31
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	96.29
PLN03211	659	ABC transporter G-25; Provisional	96.29
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.28
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	96.27
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.07
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	96.04
COG0842	286	ABC-type multidrug transport system, permease comp	96.01
PLN02165	334	adenylate isopentenyltransferase	95.99
PLN02318	656	phosphoribulokinase/uridine kinase	95.98
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	95.95
PRK09183	259	transposase/IS protein; Provisional	95.95
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	95.93
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	95.92
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	95.91
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	95.87
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	95.85
PF12679	277	ABC2_membrane_2: ABC-2 family transporter protein	95.69
PRK14974	336	cell division protein FtsY; Provisional	95.66
PLN03046	460	D-glycerate 3-kinase; Provisional	95.57
TIGR00064	272	ftsY signal recognition particle-docking protein F	95.57
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	95.57
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	95.55
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	95.55
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	95.55
PRK13851	344	type IV secretion system protein VirB11; Provision	95.48
PRK09866	741	hypothetical protein; Provisional	95.48
COG1668	407	NatB ABC-type Na+ efflux pump, permease component	95.43
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	95.2
TIGR03062	208	pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa	95.2
TIGR03819	340	heli_sec_ATPase helicase/secretion neighborhood AT	95.2
PRK10246	1047	exonuclease subunit SbcC; Provisional	95.14
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	95.06
PRK12288	347	GTPase RsgA; Reviewed	94.8
PRK13898	800	type IV secretion system ATPase VirB4; Provisional	94.74
PRK12289	352	GTPase RsgA; Reviewed	94.73
PTZ00035	337	Rad51 protein; Provisional	94.68
COG1162	301	Predicted GTPases [General function prediction onl	94.48
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	94.45
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	94.32
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	94.32
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	94.11
PTZ00202	550	tuzin; Provisional	94.04
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	94.03
PLN03210	1153	Resistant to P. syringae 6; Provisional	93.97
PRK09435	332	membrane ATPase/protein kinase; Provisional	93.92
PF12730	232	ABC2_membrane_4: ABC-2 family transporter protein	93.83
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	93.78
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	93.64
KOG4181	491	consensus Uncharacterized conserved protein [Funct	93.59
TIGR02239	316	recomb_RAD51 DNA repair protein RAD51. This eukary	93.41
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	93.32
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	93.14
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	93.04
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	92.77
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	92.7
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	92.58
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	92.54
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	92.49
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	92.22
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	92.09
PRK00409	782	recombination and DNA strand exchange inhibitor pr	92.01
COG1157	441	FliI Flagellar biosynthesis/type III secretory pat	91.96
TIGR02533	486	type_II_gspE general secretory pathway protein E.	91.83
PF00488	235	MutS_V: MutS domain V C-terminus.; InterPro: IPR00	91.8
COG3910	233	Predicted ATPase [General function prediction only	91.71
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	91.68
PF13245	76	AAA_19: Part of AAA domain	91.57
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	91.56
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	91.5
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	91.44
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	91.39
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	91.21
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	91.14
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	91.07
PRK08099	399	bifunctional DNA-binding transcriptional repressor	90.4
PRK13853	789	type IV secretion system protein VirB4; Provisiona	90.31
PRK12608	380	transcription termination factor Rho; Provisional	90.19
PLN02200	234	adenylate kinase family protein	90.11
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	90.09
PRK05399	854	DNA mismatch repair protein MutS; Provisional	89.83
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	89.74
PRK15066	257	inner membrane transport permease; Provisional	89.62
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	89.42
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	89.39
COG4962	355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	89.07
PRK10646	153	ADP-binding protein; Provisional	89.06
PRK12597	461	F0F1 ATP synthase subunit beta; Provisional	89.0
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	88.98
PF03379	215	CcmB: CcmB protein; InterPro: IPR003544 Within mit	88.83
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	88.82
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	88.8
PLN02772	398	guanylate kinase	88.8
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	88.74
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	88.68
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	88.67
PRK10867	433	signal recognition particle protein; Provisional	88.36
PRK12298	390	obgE GTPase CgtA; Reviewed	88.16
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	88.1
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	88.02
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	88.01
PRK12299	335	obgE GTPase CgtA; Reviewed	87.98
PRK09376	416	rho transcription termination factor Rho; Provisio	87.94
TIGR01039	461	atpD ATP synthase, F1 beta subunit. The sequences	87.92
cd01379	653	MYSc_type_III Myosin motor domain, type III myosin	87.84
COG3451	796	VirB4 Type IV secretory pathway, VirB4 components	87.51
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	87.19
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	86.88
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	86.84
KOG0979	1072	consensus Structural maintenance of chromosome pro	86.78
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	86.69
PRK09280	463	F0F1 ATP synthase subunit beta; Validated	86.68
PRK11058	426	GTPase HflX; Provisional	86.59
PRK13830	818	conjugal transfer protein TrbE; Provisional	86.57
PRK13833	323	conjugal transfer protein TrbB; Provisional	86.51
cd01132	274	F1_ATPase_alpha F1 ATP synthase alpha, central dom	86.31
PRK15455	644	PrkA family serine protein kinase; Provisional	86.23
KOG2373	514	consensus Predicted mitochondrial DNA helicase twi	86.16
PRK00771	437	signal recognition particle protein Srp54; Provisi	86.09
CHL00189	742	infB translation initiation factor 2; Provisional	85.97
COG0802	149	Predicted ATPase or kinase [General function predi	85.92

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=2.7e-65  Score=590.73  Aligned_cols=442  Identities=23%  Similarity=0.347  Sum_probs=336.9

Q ss_pred             CCCCceeecCCHHHHHHHHHh--CCCcccEEEEeeCCC------CCeeEEEEEEcCccc--c--------CCCCC----C
Q 011717            9 IPSSKVMSFRTAAEVDDWLYS--NPMRCPGALHFVDRN------ATTISYGIQTNSTPI--E--------MRGRY----E   66 (479)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~av~F~~~~------~~~~~Y~i~~n~~~~--~--------~~~~~----~   66 (479)
                      +..|++++++||++|++..+.  +.+.++|||+|++..      +.+++|+||+|.+..  .        ..++.    .
T Consensus       520 ~~~d~~~~~~~~~~~~~~~~~l~~~~~~~agI~F~~~~~~~~~~p~~v~y~IR~~~~~~~~t~~~~~~~w~~g~~~~~~~  599 (2272)
T TIGR01257       520 LVLDKFESYDDEVQLTQRALSLLEENRFWAGVVFPDMYPWTSSLPPHVKYKIRMDIDVVEKTNKIKDRYWDSGPRADPVE  599 (2272)
T ss_pred             eeccceecCCCHHHHHHHHHHHhhcCCeEEEEEeCCCcccccCCCCceEEEEecCccccCcchhhccccccCCCCCCccc
Confidence            467899999999999997743  556789999997652      367999999997732  1        11222    2


Q ss_pred             CCCcc--chhHHHHHHHHHHHHHHhCCCCcceeeeeeccCCCCchhH---HHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011717           67 DPTFK--FQIPLQLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEIF---SAVARIGPTFFLAVAMFGFVFQISSLVTEK  141 (479)
Q Consensus        67 ~~~~~--~~l~lq~ai~~ai~~~~~~~~~~~~~~~~~~~p~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~iV~EK  141 (479)
                      ||.|+  .|+++|++||+||++..++.. ....+..++||+|++...   ..+...+|+++++++++++..+++.+|.||
T Consensus       600 ~~~Y~~~GFl~lQ~ai~~aii~~~~~~~-~~~~v~~q~~P~P~y~~d~~l~~~~~~~pl~~~la~~~~~~~lv~~iV~EK  678 (2272)
T TIGR01257       600 DFRYIWGGFAYLQDMVEQGITRSQMQAE-PPVGIYLQQMPYPCFVDDSFMIILNRCFPIFMVLAWIYSVSMTVKSIVLEK  678 (2272)
T ss_pred             cccHHHhhHHHHHHHHHHHHHHhhcCCC-cccceeeeeCCCCCeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34453  489999999999999877532 345688999999998643   345678899999999999999999999999


Q ss_pred             HHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHhcC
Q 011717          142 ELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFIS  221 (479)
Q Consensus       142 e~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~~S~fF~  221 (479)
                      |+|+||.|+||||++++||+|||+..++.+++++++++++..  ...+|..+++.++|+++++|++++|++||++|+||+
T Consensus       679 E~rlKE~MkiMGL~~~~~w~sWfi~~~~~~~i~~~l~~~il~--~~~~~~~s~~~~lfl~~~~y~~s~I~~~fliS~fFs  756 (2272)
T TIGR01257       679 ELRLKETLKNQGVSNAVIWCTWFLDSFSIMSMSIFLLTIFIM--HGRILHYSDPFILFLFLLAFSTATIMQCFLLSTFFS  756 (2272)
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHh--hCceeecCChHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999988887766554432  345788899999999999999999999999999999


Q ss_pred             CchhhhHHHHHHHHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHHHHhcCCCCCcccccccCccCCCCC
Q 011717          222 KSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPND  301 (479)
Q Consensus       222 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  301 (479)
                      ++++|+.++.+++++.+++..+.   +.+.+..+...++++|++||.+|+.|+..++..+  .++.|++|+++...+..+
T Consensus       757 ka~~A~~~~~li~f~~~lp~~~~---~~~~~~~~~~~~~~~sL~sp~af~~g~~~i~~~e--~~~~G~~w~n~~~~~~~~  831 (2272)
T TIGR01257       757 KASLAAACSGVIYFTLYLPHILC---FAWQDRMTADLKTAVSLLSPVAFGFGTEYLVRFE--EQGLGLQWSNIGNSPLEG  831 (2272)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHH---hhcccccCHHHHHHHHhcCHHHHHHHHHHHHHHh--hhCCCcccccccccccCC
Confidence            99999999888877766554321   1223344556778889999999999999998864  457789999987654322


Q ss_pred             CcccccHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccccccccccCCCCCCccccCccccccCCCCCCCCCCCC
Q 011717          302 TECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPD  381 (479)
Q Consensus       302 ~~~~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (479)
                      +  .++++..+.||++|+++|++|+||+|+|+|++||++|||+|+++++||+++.+.......      .....+...++
T Consensus       832 d--~~s~~~~~~ml~~d~~lY~lL~~Yld~V~PgeyG~~kpw~F~~~~syW~~~~~~~~~~~~------~~~~~~~~~~~  903 (2272)
T TIGR01257       832 D--EFSFLLSMKMMLLDAALYGLLAWYLDQVFPGDYGTPLPWYFLLQESYWLGGEGCSTREER------ALEKTEPLTEE  903 (2272)
T ss_pred             C--CccHHHHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCcccccchhhhcCCccccccccc------ccccccccccc
Confidence            2  367888899999999999999999999999999999999999999999764321100000      00000000000


Q ss_pred             ChhhHHHHHHHHhhhhcCCCCCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHH
Q 011717          382 DEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKT  461 (479)
Q Consensus       382 d~dv~~e~~~~~~~~~~~~~~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKT  461 (479)
                      .+|...++.......++++.+....++++||+|.|+++             .+.||+|+||++++|||++|+||||||||
T Consensus       904 ~~~~~~~~~~~~~~~E~~~~~~~~~L~I~nLsK~y~~~-------------~k~aL~~lsl~I~~Gei~aLLG~NGAGKS  970 (2272)
T TIGR01257       904 MEDPEHPEGINDSFFERELPGLVPGVCVKNLVKIFEPS-------------GRPAVDRLNITFYENQITAFLGHNGAGKT  970 (2272)
T ss_pred             cccccccccccccccccccCCCCceEEEEeEEEEecCC-------------CceEEEeeEEEEcCCcEEEEECCCCChHH
Confidence            00100000000001112223346789999999999532             12699999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCcccC
Q 011717          462 TTISCLTGITPVTGGDGC  479 (479)
Q Consensus       462 Tt~~mLtG~~~pTsG~a~  479 (479)
                      |+++||+|+.+||+|+++
T Consensus       971 TLLkiLaGLl~PtsG~I~  988 (2272)
T TIGR01257       971 TTLSILTGLLPPTSGTVL  988 (2272)
T ss_pred             HHHHHHhcCCCCCceEEE
Confidence            999999999999999874

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=100.00  E-value=7.2e-42  Score=396.64  Aligned_cols=354  Identities=20%  Similarity=0.278  Sum_probs=241.7

Q ss_pred             hhHHH-HHHHHHHHHHHhCCC----CcceeeeeeccCCCCchhHH------HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 011717           73 QIPLQ-LAAEREIARSLVGDP----NFSWVVGLKEFAHPPGEIFS------AVARIGPTFFLAVAMFGFVFQISSLVTEK  141 (479)
Q Consensus        73 ~l~lq-~ai~~ai~~~~~~~~----~~~~~~~~~~~p~p~~~~~~------~~~~~~~~~~~~~~~~~~~~~v~~iV~EK  141 (479)
                      .+|+- +.+++||++...++.    +..+++.++|+|....+...      .......+++++...+..+.++..+|+||
T Consensus      1626 s~p~~lN~l~NaiLr~~~~~~~~~~~~~I~v~N~Plp~t~~~~~~~~~~~~~~~~~iai~ii~~~sfi~asfv~~~V~ER 1705 (2272)
T TIGR01257      1626 ALVSFLNVAHNAILRASLPKDRDPEEYGITVISQPLNLTKEQLSEITVLTTSVDAVVAICVIFAMSFVPASFVLYLIQER 1705 (2272)
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCccceEEEEecCCCCchhhhhhhhhcccchhHHHHHHHHHHHHHHHHHHheeeehHH
Confidence            34443 667899999865422    35778888888876433111      11111122222222222234455689999


Q ss_pred             HHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-CchHHHHHHHHHHHHHHHHHHHHHHHhc
Q 011717          142 ELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLN-NSFAVLFLLFFLFELNMTGFAFMFSAFI  220 (479)
Q Consensus       142 e~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~-~~~~~l~ll~~l~g~s~i~~~~~~S~fF  220 (479)
                      ++|+||+|.++|++..+||+|+|+||++.|++++++++++..+++...|.. .+++.+++++++||+|.++++|++|++|
T Consensus      1706 ~skaK~lQ~vSGv~~~~YWls~fl~D~~~y~i~~~~~i~i~~~f~~~~~~~~~~l~~~~lll~lyG~a~ip~tYl~SflF 1785 (2272)
T TIGR01257      1706 VNKAKHLQFISGVSPTTYWLTNFLWDIMNYAVSAGLVVGIFIGFQKKAYTSPENLPALVALLMLYGWAVIPMMYPASFLF 1785 (2272)
T ss_pred             hhhHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999888888888766654 5777888999999999999999999999


Q ss_pred             CCchhhhHHHHHH-HHHHHHHHHHHhh-cc-cc---CcccchhhhhhheecChHHHHHHHHHHHHhcCCCCCcccccccC
Q 011717          221 SKSSSSTTIGFSV-FIVGFLTQLVTAF-GF-PY---SDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRR  294 (479)
Q Consensus       221 ~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~-~~---~~~~~~~~~~~~~l~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~  294 (479)
                      +++.+|.+...++ +++|++..++..+ .. ..   ....+..+++++.++|++|++.|+..++.......... .....
T Consensus      1786 ~~~~~A~~~~~~in~~~G~~~~i~~~il~~~~~~~~~~~~~~~l~~if~i~P~f~lg~gl~~l~~~~~~~~~~~-~~~~~ 1864 (2272)
T TIGR01257      1786 DVPSTAYVALSCANLFIGINSSAITFVLELFENNRTLLRFNAMLRKLLIVFPHFCLGRGLIDLALSQAVTDVYA-QFGEE 1864 (2272)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHeeCchhhhHHHHHHHHHhHHHHHHHH-hhccc
Confidence            9999997654433 3444433322211 11 00   01234577888999999999999999876431100000 00000


Q ss_pred             ccCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccccccccccCCCCCCccccCccccccCCCCC
Q 011717          295 AECAPNDTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPP  374 (479)
Q Consensus       295 ~~~~~~~~~~~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  374 (479)
                      ....+..  +. ..+..+++|++++++|+++.+++|+-..     +         +-|....                 .
T Consensus      1865 ~~~~~~~--~~-~~g~~ll~m~~~~iv~flLl~~ie~~~~-----~---------~~~~~~~-----------------~ 1910 (2272)
T TIGR01257      1865 HSANPFQ--WD-LIGKNLVAMAVEGVVYFLLTLLIQHHFF-----L---------SRWIAEP-----------------A 1910 (2272)
T ss_pred             ccCCccc--hh-hccHHHHHHHHHHHHHHHHHHHHHhhhh-----h---------hhhcccc-----------------C
Confidence            0000000  11 1234567788999999999999985210     0         0111110                 0


Q ss_pred             CCCCCCCChhhHHHHHHHHhhhhcCCCCCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEEC
Q 011717          375 MEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLG  454 (479)
Q Consensus       375 ~~~~~~~d~dv~~e~~~~~~~~~~~~~~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG  454 (479)
                      .+...+||+||.+|+.++.+..     ..+..++++||+|.|+++             ++.||+|+||+|++|||+||||
T Consensus      1911 ~~~~~~eD~DV~~Er~rV~~~~-----~~~~~L~v~nLsK~Y~~~-------------~~~aL~~ISf~I~~GEi~gLLG 1972 (2272)
T TIGR01257      1911 KEPIFDEDDDVAEERQRIISGG-----NKTDILRLNELTKVYSGT-------------SSPAVDRLCVGVRPGECFGLLG 1972 (2272)
T ss_pred             cCcCCCchhHHHHHHHHHhccC-----CCCceEEEEEEEEEECCC-------------CceEEEeeEEEEcCCcEEEEEC
Confidence            0112358999999999886431     124579999999999532             1269999999999999999999


Q ss_pred             CCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          455 PNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       455 ~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +||||||||++||+|+.+||+|+++
T Consensus      1973 ~NGAGKTTLlkmL~Gll~ptsG~I~ 1997 (2272)
T TIGR01257      1973 VNGAGKTTTFKMLTGDTTVTSGDAT 1997 (2272)
T ss_pred             CCCCcHHHHHHHHhCCCCCCccEEE
Confidence            9999999999999999999999874

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=100.00  E-value=2.5e-35  Score=328.49  Aligned_cols=355  Identities=24%  Similarity=0.284  Sum_probs=217.8

Q ss_pred             HHHHHHHHHHHHhCCCCcceeeeeeccCCCCchh-HHH-HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCc
Q 011717           77 QLAAEREIARSLVGDPNFSWVVGLKEFAHPPGEI-FSA-VARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGL  154 (479)
Q Consensus        77 q~ai~~ai~~~~~~~~~~~~~~~~~~~p~p~~~~-~~~-~~~~~~~~~~~~~~~~~~~~v~~iV~EKe~klke~m~~mGl  154 (479)
                      ....++++.+...+..   +.+.+++.|.+.... .+. .....+.+++....+.+...+..+|.||+.|+||.|+++|+
T Consensus       260 ~~~~~n~l~~~~~~~~---i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~e~~~~~~~~~~i~G~  336 (885)
T KOG0059|consen  260 LGLGSNALRRALNLSG---ISVLNEPMPLSGAQLSLDLLADLLGALFLLFVFLLLFSVFLLSLILERQQRLRHQQLIAGL  336 (885)
T ss_pred             cchHHHHHHHhhcccc---ceeeecCcCccHhhhhhhhhhHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHhCC
Confidence            4445677777653322   455555666554332 223 33455555555555556667778899999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHH
Q 011717          155 YDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVF  234 (479)
Q Consensus       155 ~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~~S~fF~~~~~a~~~~~~~~  234 (479)
                      ++.+||+++++||++.+++.++++.+++.+++  ++...+..++++++++|+++.++++|+.|++|+++.++.+...+..
T Consensus       337 ~~~~yw~~~~~~d~~~~~l~~~~~~~~~~~f~--~~~~~~~~~~~~~~~l~~~s~i~l~y~~s~~f~~~~~~~v~~~i~~  414 (885)
T KOG0059|consen  337 SPSTYWLFALVWDLLLYLLILLILLIFVLIFG--FFAGNNTVIILLLLLLYIRSAIPLTYILSFIFSKESTASVILSIYN  414 (885)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhheee--cccccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCceeehhhHH
Confidence            99999999999999999999998888888877  5666788899999999999999999999999999999887665554


Q ss_pred             HHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHHHHhcCC---CCCcccccccCccCCCCCCccc---c-c
Q 011717          235 IVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATET---PQDIGISWSRRAECAPNDTECV---I-T  307 (479)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~~~~~~~~~---~-~  307 (479)
                      +++.+...+......+.............+.|++.+......+.....+   ....+..|++...+........   . .
T Consensus       415 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  494 (885)
T KOG0059|consen  415 LISGLLVFFAVFILQSFANGRTGDIFSMILVPGFTLFLPLYELSSLAAEGNLNLNDGMSLEVLGNDESFYTLLLEWLLPL  494 (885)
T ss_pred             HHHHHHHHHHHhhhhhcccccHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhcchhhhhhhhhcccccccchhHHHHHHH
Confidence            4332222111111122222222233333344554444333333221111   1233455655443210000000   0 0


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCcccccccccccCCCCCCccccCccccccCCCCCCCCCCCCChhhHH
Q 011717          308 INDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKSTFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLE  387 (479)
Q Consensus       308 ~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dv~~  387 (479)
                      ....+..+....+.+.++...+                   +..+.++.....+.        ..+..+....||+||.+
T Consensus       495 ~~~~~~~~~~~~~~~~~f~~l~-------------------~~~~~~~~~~~~~~--------~~~~~~~~~~e~~~v~~  547 (885)
T KOG0059|consen  495 IGRRYLALVTEGVKDDLFFLLI-------------------FVPFKRRMRALTQN--------MLKGFEPVEVEKLDVAR  547 (885)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-------------------hhhhcccccccccc--------ccCCCcCcchhhHHHHH
Confidence            0111112222223332222221                   11111111000000        01112234557788888


Q ss_pred             HHHHHHhhhhcCCCCCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHH
Q 011717          388 EENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL  467 (479)
Q Consensus       388 e~~~~~~~~~~~~~~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mL  467 (479)
                      |+.++......  .....++++++|+|.|+..           +   .|||++|++|++|||||||||||||||||++||
T Consensus       548 e~~~v~~~~~~--~~~~~~~~~~~L~k~y~~~-----------~---~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~ml  611 (885)
T KOG0059|consen  548 ERNRVETLLFR--SSYSSALVLNNLSKVYGGK-----------D---GAVRGLSFAVPPGECFGLLGVNGAGKTTTFKML  611 (885)
T ss_pred             HHHhhhhhhhc--ccccceEEEcceeeeecch-----------h---hhhcceEEEecCCceEEEecCCCCCchhhHHHH
Confidence            87655443221  1224789999999999542           1   199999999999999999999999999999999


Q ss_pred             hCCCCCCCcccC
Q 011717          468 TGITPVTGGDGC  479 (479)
Q Consensus       468 tG~~~pTsG~a~  479 (479)
                      ||+.+||+|+|+
T Consensus       612 tG~~~~t~G~a~  623 (885)
T KOG0059|consen  612 TGETKPTSGEAL  623 (885)
T ss_pred             hCCccCCcceEE
Confidence            999999999985

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.73  E-value=2.1e-18  Score=158.41  Aligned_cols=58  Identities=38%  Similarity=0.661  Sum_probs=54.2

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+.+++++|+|++.               .||||+||.|++||+|||||||||||||||+||.|+++||+|.+
T Consensus         2 ~L~ie~vtK~Fg~k---------------~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I   59 (300)
T COG4152           2 ALEIEGVTKSFGDK---------------KAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI   59 (300)
T ss_pred             ceEEecchhccCce---------------eeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceE
Confidence            47899999999642               79999999999999999999999999999999999999999975

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=99.69  E-value=1.9e-18  Score=154.37  Aligned_cols=60  Identities=27%  Similarity=0.473  Sum_probs=54.9

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..+.+++|.|.|+++               .+|+++||.|++|||.||||||||||||+|.|++|+.+|++|.++
T Consensus         3 ~~L~a~~l~K~y~kr---------------~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~   62 (243)
T COG1137           3 STLVAENLAKSYKKR---------------KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKIL   62 (243)
T ss_pred             cEEEehhhhHhhCCe---------------eeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEE
Confidence            358899999999542               589999999999999999999999999999999999999999863

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.68  E-value=1.2e-17  Score=154.50  Aligned_cols=60  Identities=33%  Similarity=0.578  Sum_probs=55.2

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..+++++|+|.|++-               +||||+||+|++||++||+|||||||||+||+|||.++||+|+++
T Consensus         3 ~lL~v~~l~k~FGGl---------------~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~   62 (250)
T COG0411           3 PLLEVRGLSKRFGGL---------------TAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVI   62 (250)
T ss_pred             ceeeeccceeecCCE---------------EEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEE
Confidence            357799999999652               799999999999999999999999999999999999999999863

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=99.66  E-value=2.5e-17  Score=147.38  Aligned_cols=59  Identities=24%  Similarity=0.414  Sum_probs=54.0

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +.+.+|+|.|+..              +.||+|+||.+++|||+||||+|||||||+++||.+++.||+|.++
T Consensus         2 l~v~~l~K~y~~~--------------v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~   60 (245)
T COG4555           2 LEVTDLTKSYGSK--------------VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT   60 (245)
T ss_pred             eeeeehhhhccCH--------------HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEE
Confidence            6788999999642              2599999999999999999999999999999999999999999874

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=99.63  E-value=3.6e-16  Score=153.93  Aligned_cols=60  Identities=37%  Similarity=0.658  Sum_probs=54.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+.+++|+|.|+++              +.||+|+||++++||++|||||||||||||++||+|+..||+|++
T Consensus         3 ~~i~~~~l~k~~~~~--------------~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i   62 (293)
T COG1131           3 EVIEVRNLTKKYGGD--------------KTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI   62 (293)
T ss_pred             ceeeecceEEEeCCC--------------CEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence            357889999999631              269999999999999999999999999999999999999999986

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.63  E-value=1.7e-16  Score=148.21  Aligned_cols=73  Identities=32%  Similarity=0.455  Sum_probs=57.0

Q ss_pred             eEEEecceEEcCCCCc-ccccc-----ccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRK-IGCCC-----KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~-~~~~~-----~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+.++||+|.|.-.-+ .|...     ..+|++...||.|+||.+++||+.|+||+||||||||+|||||++.||+|.+
T Consensus         3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v   81 (325)
T COG4586           3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV   81 (325)
T ss_pred             eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeE
Confidence            5677888888853211 01000     1134456779999999999999999999999999999999999999999975

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.60  E-value=2.4e-13  Score=158.97  Aligned_cols=63  Identities=25%  Similarity=0.297  Sum_probs=54.6

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~---pTsG~a  478 (479)
                      ..++++||++.|+.+           ++.+.+++|+|+.+++||++||+|+|||||||++++|+|..+   |++|++
T Consensus       758 ~~l~~~nl~~~~~~~-----------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I  823 (1394)
T TIGR00956       758 DIFHWRNLTYEVKIK-----------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDR  823 (1394)
T ss_pred             ceEEEEeeEEEecCC-----------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE
Confidence            458999999999532           112369999999999999999999999999999999999987   788986

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=99.59  E-value=1.5e-15  Score=150.68  Aligned_cols=60  Identities=35%  Similarity=0.597  Sum_probs=55.4

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..+++++|+|.|++.               .|++|+||+|++|||+||+||||||||||+++|+|+.+|++|+++
T Consensus         6 ~~i~i~~l~k~~~~~---------------~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~   65 (306)
T PRK13537          6 APIDFRNVEKRYGDK---------------LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS   65 (306)
T ss_pred             ceEEEEeEEEEECCe---------------EEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            479999999999532               699999999999999999999999999999999999999999863

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=99.58  E-value=2.4e-15  Score=151.08  Aligned_cols=60  Identities=35%  Similarity=0.619  Sum_probs=55.6

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ...++++||+|.|++.               .|++|+||+|++||++||+||||||||||+++|+|+++|++|++
T Consensus        39 ~~~i~i~nl~k~y~~~---------------~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i   98 (340)
T PRK13536         39 TVAIDLAGVSKSYGDK---------------AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI   98 (340)
T ss_pred             ceeEEEEEEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEE
Confidence            4579999999999532               59999999999999999999999999999999999999999986

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.56  E-value=6.5e-15  Score=136.55  Aligned_cols=73  Identities=26%  Similarity=0.397  Sum_probs=57.0

Q ss_pred             eEEEecceEEcCCCCc---------cccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          406 AVQIRGLVKTFPGTRK---------IGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~---------~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      .|+++|++|.|+-...         .+.+...++...+.|+||+||++++||.+||+|||||||||++++|+|.++||+|
T Consensus         3 ~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G   82 (249)
T COG1134           3 VIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG   82 (249)
T ss_pred             EEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence            5777888888754310         0000001234577899999999999999999999999999999999999999999


Q ss_pred             cc
Q 011717          477 DG  478 (479)
Q Consensus       477 ~a  478 (479)
                      ++
T Consensus        83 ~v   84 (249)
T COG1134          83 KV   84 (249)
T ss_pred             eE
Confidence            86

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.54  E-value=5.9e-15  Score=151.39  Aligned_cols=61  Identities=33%  Similarity=0.626  Sum_probs=56.5

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .+.+++++++|.|++               ++|++|+||++++|||.+|+|.|||||||++|+|+|.++||+|+++
T Consensus         6 ~~ll~~~~i~K~Fgg---------------V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~   66 (500)
T COG1129           6 PPLLELRGISKSFGG---------------VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEIL   66 (500)
T ss_pred             cceeeeecceEEcCC---------------ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEE
Confidence            457899999999965               3799999999999999999999999999999999999999999863

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=99.54  E-value=8.5e-15  Score=145.06  Aligned_cols=61  Identities=31%  Similarity=0.597  Sum_probs=56.3

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ...+++++++|.|++               +.||+|+||+|++||+++||||+|+||||+++||+|+..||+|+++
T Consensus         3 ~~~l~i~~v~k~yg~---------------~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~   63 (352)
T COG3842           3 KPALEIRNVSKSFGD---------------FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL   63 (352)
T ss_pred             CceEEEEeeeeecCC---------------eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            457999999999963               2799999999999999999999999999999999999999999863

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=99.52  E-value=1.4e-14  Score=143.74  Aligned_cols=58  Identities=31%  Similarity=0.566  Sum_probs=53.7

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++++|.|++.               .|++|+||++++|||+||+|||||||||+++||+|+.+|++|++
T Consensus         2 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i   59 (301)
T TIGR03522         2 SIRVSSLTKLYGTQ---------------NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV   59 (301)
T ss_pred             EEEEEEEEEEECCE---------------EEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            37899999999532               59999999999999999999999999999999999999999986

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.52  E-value=1.2e-14  Score=146.47  Aligned_cols=61  Identities=34%  Similarity=0.581  Sum_probs=56.6

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ...+.+++++|.|++               ++|.||+||+|++|||.+|||.|||||||++|||.|.++||+|+++
T Consensus         2 ~~~l~~~~itK~f~~---------------~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~   62 (501)
T COG3845           2 EPALEMRGITKRFPG---------------VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR   62 (501)
T ss_pred             CceEEEeccEEEcCC---------------EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEE
Confidence            357999999999963               3799999999999999999999999999999999999999999874

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=99.51  E-value=1.8e-14  Score=143.00  Aligned_cols=59  Identities=36%  Similarity=0.576  Sum_probs=54.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++||+|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus         3 ~~i~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i   61 (303)
T TIGR01288         3 VAIDLVGVSKSYGDK---------------VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI   61 (303)
T ss_pred             cEEEEEeEEEEeCCe---------------EEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            468999999999532               59999999999999999999999999999999999999999986

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.50  E-value=2.7e-14  Score=134.98  Aligned_cols=59  Identities=22%  Similarity=0.519  Sum_probs=54.9

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..|+++||+..|++.               .|++|+||++++||+++|+|||||||||+++.|.|+++|++|++
T Consensus         3 ~~i~v~nl~v~y~~~---------------~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i   61 (254)
T COG1121           3 PMIEVENLTVSYGNR---------------PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI   61 (254)
T ss_pred             cEEEEeeeEEEECCE---------------eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE
Confidence            469999999999542               49999999999999999999999999999999999999999987

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=99.50  E-value=2.9e-14  Score=135.38  Aligned_cols=59  Identities=29%  Similarity=0.573  Sum_probs=54.6

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .++++||+..|+++               ..++|+||++++||+++|||||||||||++++|+|+++|.+|+++
T Consensus         2 ~L~~~~ls~~y~~~---------------~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~   60 (258)
T COG1120           2 MLEVENLSFGYGGK---------------PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL   60 (258)
T ss_pred             eeEEEEEEEEECCe---------------eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEE
Confidence            47899999999642               689999999999999999999999999999999999999999874

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=99.50  E-value=3e-14  Score=140.41  Aligned_cols=59  Identities=25%  Similarity=0.541  Sum_probs=54.6

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .|+++||+|.|++.               .||+++||++.+||.++||||||+|||||++||+|+.+||+|+++
T Consensus         3 ~i~l~~v~K~yg~~---------------~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~   61 (338)
T COG3839           3 ELELKNVRKSFGSF---------------EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL   61 (338)
T ss_pred             EEEEeeeEEEcCCc---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEE
Confidence            58999999999642               299999999999999999999999999999999999999999874

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.49  E-value=3.9e-14  Score=130.23  Aligned_cols=58  Identities=26%  Similarity=0.525  Sum_probs=54.0

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++|+-.|++.               +|++++||.|++|||++|||+||||||||++.|+|+.+|++|++
T Consensus         3 mL~v~~l~~~YG~~---------------~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I   60 (237)
T COG0410           3 MLEVENLSAGYGKI---------------QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI   60 (237)
T ss_pred             ceeEEeEeecccce---------------eEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE
Confidence            47899999999642               79999999999999999999999999999999999999999986

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.48  E-value=5.4e-14  Score=134.16  Aligned_cols=63  Identities=27%  Similarity=0.444  Sum_probs=56.4

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      |++++++|.|...          +.+...||+|+||.|++|||||++|+.||||||+++++.|+..||+|+++
T Consensus         2 I~l~~vsK~~~~~----------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~   64 (339)
T COG1135           2 IELENVSKTFGQT----------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVF   64 (339)
T ss_pred             eEEEeeeeeeccC----------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEE
Confidence            7899999999653          12356899999999999999999999999999999999999999999863

>PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A

Probab=99.47  E-value=3.2e-14  Score=142.16  Aligned_cols=271  Identities=22%  Similarity=0.291  Sum_probs=36.9

Q ss_pred             eeecCCHHHHHHHHHhCCCcccEEEEeeCCCCC-------eeEEEEEEcCccccCCCCCCCCCccchhHHHHHHHHHHHH
Q 011717           14 VMSFRTAAEVDDWLYSNPMRCPGALHFVDRNAT-------TISYGIQTNSTPIEMRGRYEDPTFKFQIPLQLAAEREIAR   86 (479)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~av~F~~~~~~-------~~~Y~i~~n~~~~~~~~~~~~~~~~~~l~lq~ai~~ai~~   86 (479)
                      ...++|++++++.+.++.  ..+++++++....       ..++++..|....           .....+|.++++ +.+
T Consensus        60 ~~~~~~~~~~~~~~~~~~--~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~l~~-l~~  125 (344)
T PF12698_consen   60 VVEYDSEEEAKDALKNGK--IDAIIVIPKNFSQDLLSSGESPNITVYINSSNP-----------HSSQIIQNALSS-LLQ  125 (344)
T ss_dssp             EEECS-HHHHHHHHHHHT---SEEEEE-TTCCCHCH-TT--ECCEEEESSSSH-----------HHHHHHHHHHHH-HHH
T ss_pred             eeeeCCHHHHHHHHHhCC--CcEEEEcCccccccccccCCcceEEEEeecccc-----------hhhhhhhccccc-cch
Confidence            568999999999887653  3467777665432       2233344332211           111344555555 555


Q ss_pred             HHhCCC-------CcceeeeeeccCCCCchhHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcChhHH
Q 011717           87 SLVGDP-------NFSWVVGLKEFAHPPGEIFSAVARIGPTFFLAVAMFGFVFQISSLVTEKELKLRQVMTMMGLYDSAY  159 (479)
Q Consensus        87 ~~~~~~-------~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~iV~EKe~klke~m~~mGl~~~~y  159 (479)
                      ......       ....++..+..|..... .+....+.+.++....++++......+++|||+|+++.|+++|++...|
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ek~~~~~~~l~~~~~~~~~~  204 (344)
T PF12698_consen  126 QLNASSEGKSAIQSSNSPIPVESIPLSNPS-SSFASYLIPFILFFILLIGFSFIAMSIVEEKESGTRERLLSSGVSPWSY  204 (344)
T ss_dssp             HHHHCCCGCCCCHHHT--EEEEEEEECCCH-HHCHTT-------------------------------------------
T ss_pred             hhhhhhhhhhhhcccccccccccccccccc-ccccccccccchhHHHHHHHHhhchhhhhHhhhhhhHhhhcccCCHHHH
Confidence            433211       01122333333322111 1222223332222223333333455689999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhHHHHHHHHHHHH
Q 011717          160 WLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFMFSAFISKSSSSTTIGFSVFIVGFL  239 (479)
Q Consensus       160 Wls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~~S~fF~~~~~a~~~~~~~~~~~~~  239 (479)
                      |+++++.+++..++.+++++++  +++...+...+...+++++++++++.+++++++|.+|++++.+..+..++.+....
T Consensus       205 ~~~~~l~~~~~~~i~~~i~~~i--~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~  282 (344)
T PF12698_consen  205 WLSKFLAYFLVSLIQSLIIIII--IFGISGIPFGNFLLLLLLLLLFSLAFISFGFLISSFFKNSSTAISVASIIILLLSF  282 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhhHHHHHHHHHHHH--HhccccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            9999999999988887665553  33311233336667778899999999999999999999998876544333221111


Q ss_pred             HHHHHhhccccCcccchhhhhhheecChHHHHHHHHHHHHhcCCCCCcccccccCccCCCCCCcccccHHHHHHHHHHHH
Q 011717          240 TQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSDATETPQDIGISWSRRAECAPNDTECVITINDIYIWLVATF  319 (479)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  319 (479)
                      ....   .++ .+..+..++.+..++|++.+..++..+....         |.              .....+.++++.+
T Consensus       283 ~~~~---~~~-~~~~~~~~~~i~~~~P~~~~~~~~~~~~~~~---------~~--------------~~~~~~~~l~~~~  335 (344)
T PF12698_consen  283 LSGG---FFP-LSSLPSFLQWISSFLPFYWFIQGLRNIIYGD---------WS--------------EIWISLIILLLFA  335 (344)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHH---HHh-HHhhHHHHHHHHHHhhHHHHHHHHHHHHHhc---------HH--------------HHHHHHHHHHHHH
Confidence            1000   011 1223455667788999998888877665210         00              1123346677788


Q ss_pred             HHHHHHHHH
Q 011717          320 FVWFILAIY  328 (479)
Q Consensus       320 ~ly~lL~~y  328 (479)
                      ++|+++++|
T Consensus       336 ~v~~~l~~~  344 (344)
T PF12698_consen  336 VVYLLLAIL  344 (344)
T ss_dssp             ---------
T ss_pred             HHHHHHHhC
Confidence            889888876

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=99.47  E-value=5.5e-14  Score=132.89  Aligned_cols=61  Identities=31%  Similarity=0.634  Sum_probs=53.0

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++..           ....+++++||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus         1 l~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i   61 (218)
T cd03255           1 IELKNLSKTYGGGG-----------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV   61 (218)
T ss_pred             CeEeeeEEEecCCC-----------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE
Confidence            46889999995421           01259999999999999999999999999999999999999999986

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=99.46  E-value=9.6e-14  Score=131.05  Aligned_cols=59  Identities=31%  Similarity=0.526  Sum_probs=53.2

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++|++|.|++..             ..+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         2 l~~~~l~~~~~~~~-------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   60 (216)
T TIGR00960         2 IRFEQVSKAYPGGH-------------QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI   60 (216)
T ss_pred             eEEEEEEEEecCCC-------------eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            67899999995321             158999999999999999999999999999999999999999986

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.46  E-value=7.5e-14  Score=142.74  Aligned_cols=59  Identities=31%  Similarity=0.516  Sum_probs=54.5

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .++++||+|.|++.               .+++|+||++++||++||+|||||||||++++|+|+++|++|+++
T Consensus         3 ~L~~~nls~~y~~~---------------~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~   61 (402)
T PRK09536          3 MIDVSDLSVEFGDT---------------TVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL   61 (402)
T ss_pred             eEEEeeEEEEECCE---------------EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEE
Confidence            58899999999532               599999999999999999999999999999999999999999863

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.46  E-value=1.3e-13  Score=130.06  Aligned_cols=60  Identities=23%  Similarity=0.277  Sum_probs=55.2

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..+++++++|.|++.               .+++++||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         9 ~~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   68 (214)
T PRK13543          9 PPLLAAHALAFSRNEE---------------PVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI   68 (214)
T ss_pred             cceEEEeeEEEecCCc---------------eeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeE
Confidence            4569999999999532               58999999999999999999999999999999999999999986

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.46  E-value=9.3e-14  Score=130.31  Aligned_cols=58  Identities=29%  Similarity=0.452  Sum_probs=53.5

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         2 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   59 (207)
T PRK13539          2 MLEGEDLACVRGGR---------------VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI   59 (207)
T ss_pred             EEEEEeEEEEECCe---------------EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            37899999999532               58999999999999999999999999999999999999999986

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=99.46  E-value=1e-13  Score=139.16  Aligned_cols=61  Identities=23%  Similarity=0.500  Sum_probs=54.3

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++||+|.|+++.           ..+.|++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus         2 I~~~~lsk~y~~~~-----------~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I   62 (343)
T TIGR02314         2 IKLSNITKVFHQGT-----------KTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV   62 (343)
T ss_pred             EEEEEEEEEECCCC-----------cceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            78999999995321           12369999999999999999999999999999999999999999986

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.45  E-value=1e-13  Score=124.90  Aligned_cols=57  Identities=33%  Similarity=0.675  Sum_probs=52.2

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++.               .+++++||++++||+++|+|+||+||||++++|+|+.+|++|++
T Consensus         1 l~~~~l~~~~~~~---------------~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v   57 (163)
T cd03216           1 LELRGITKRFGGV---------------KALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI   57 (163)
T ss_pred             CEEEEEEEEECCe---------------EEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            4688999999532               58999999999999999999999999999999999999999976

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.45  E-value=1.4e-13  Score=126.77  Aligned_cols=60  Identities=32%  Similarity=0.676  Sum_probs=55.6

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++||+|+|+++              +.|++|+||++++||..+++|++||||||++++|.|+.+||+|++
T Consensus         2 ~~i~~~nl~k~yp~~--------------~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i   61 (258)
T COG3638           2 MMIEVKNLSKTYPGG--------------HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI   61 (258)
T ss_pred             ceEEEeeeeeecCCC--------------ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE
Confidence            368999999999653              269999999999999999999999999999999999999999986

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=99.45  E-value=9e-14  Score=131.64  Aligned_cols=61  Identities=25%  Similarity=0.568  Sum_probs=53.2

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++..           ....+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus         1 l~~~~l~~~~~~~~-----------~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   61 (220)
T cd03293           1 LEVRNVSKTYGGGG-----------GAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEV   61 (220)
T ss_pred             CeEEEEEEEcCCCC-----------cceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            46889999996421           11269999999999999999999999999999999999999999986

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.45  E-value=1.3e-13  Score=133.53  Aligned_cols=60  Identities=20%  Similarity=0.414  Sum_probs=55.2

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ...++++||+|.|++.               .+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus        10 ~~~l~i~~l~~~~~~~---------------~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i   69 (257)
T PRK11247         10 GTPLLLNAVSKRYGER---------------TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL   69 (257)
T ss_pred             CCcEEEEEEEEEECCc---------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence            3569999999999532               58999999999999999999999999999999999999999986

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.45  E-value=1.1e-13  Score=132.87  Aligned_cols=58  Identities=29%  Similarity=0.554  Sum_probs=53.5

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++|++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus         2 ~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   59 (239)
T cd03296           2 SIEVRNVSKRFGDF---------------VALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTI   59 (239)
T ss_pred             EEEEEeEEEEECCE---------------EeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            37899999999532               58999999999999999999999999999999999999999986

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.45  E-value=1.4e-13  Score=130.77  Aligned_cols=60  Identities=15%  Similarity=0.284  Sum_probs=55.1

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..+++++|+|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         5 ~~~i~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   64 (225)
T PRK10247          5 SPLLQLQNVGYLAGDA---------------KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL   64 (225)
T ss_pred             CceEEEeccEEeeCCc---------------eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE
Confidence            4569999999999532               58999999999999999999999999999999999999999976

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.44  E-value=1.3e-13  Score=121.53  Aligned_cols=57  Identities=28%  Similarity=0.432  Sum_probs=52.0

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++.               .+++++||++++||+++++|+|||||||++++|+|+.+|++|++
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i   57 (144)
T cd03221           1 IELENLSKTYGGK---------------LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV   57 (144)
T ss_pred             CEEEEEEEEECCc---------------eEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE
Confidence            3678999999532               58999999999999999999999999999999999999999976

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.44  E-value=1.6e-13  Score=135.21  Aligned_cols=64  Identities=23%  Similarity=0.395  Sum_probs=55.1

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .+++++|+|.|++..          ...+.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus         2 ~l~~~~l~~~y~~~~----------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~   65 (287)
T PRK13637          2 SIKIENLTHIYMEGT----------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKII   65 (287)
T ss_pred             EEEEEEEEEECCCCC----------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEE
Confidence            478999999996421          0112599999999999999999999999999999999999999999863

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=99.44  E-value=1.4e-13  Score=129.81  Aligned_cols=58  Identities=31%  Similarity=0.564  Sum_probs=52.8

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|+++              ..+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus         2 l~~~~l~~~~~~~--------------~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i   59 (214)
T TIGR02673         2 IEFHNVSKAYPGG--------------VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV   59 (214)
T ss_pred             EEEEeeeEEeCCC--------------ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            6789999999421              158999999999999999999999999999999999999999986

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.44  E-value=1.5e-13  Score=135.36  Aligned_cols=64  Identities=11%  Similarity=0.277  Sum_probs=54.9

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .++++||+|.|++...          ..+.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus         2 ~i~~~~l~~~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~   65 (287)
T PRK13641          2 SIKFENVDYIYSPGTP----------MEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTIT   65 (287)
T ss_pred             EEEEEEEEEEcCCCCC----------ccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            4789999999963210          012599999999999999999999999999999999999999999863

>PLN03140 ABC transporter G family member; Provisional

Probab=99.44  E-value=3.3e-11  Score=140.93  Aligned_cols=72  Identities=19%  Similarity=0.197  Sum_probs=53.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p--TsG~a  478 (479)
                      ..+..+||+...+.+...  .....+++.+.+++|+|+.+++||+++|+|+|||||||++++|+|..++  ++|++
T Consensus       866 ~~~~~~~v~y~v~~~~~~--~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I  939 (1470)
T PLN03140        866 LAMSFDDVNYFVDMPAEM--KEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDI  939 (1470)
T ss_pred             ceEEEEEEEEEEccCccc--cccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceE
Confidence            468999998887432110  0000112234699999999999999999999999999999999998763  67865

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.44  E-value=1.9e-13  Score=134.08  Aligned_cols=61  Identities=20%  Similarity=0.365  Sum_probs=55.1

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+++++|+|.|++.             .+.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         4 ~~l~~~~l~~~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i   64 (279)
T PRK13635          4 EIIRVEHISFRYPDA-------------ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI   64 (279)
T ss_pred             ceEEEEEEEEEeCCC-------------CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence            468999999999532             1259999999999999999999999999999999999999999986

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=99.44  E-value=1.3e-13  Score=130.55  Aligned_cols=59  Identities=46%  Similarity=0.625  Sum_probs=52.7

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++.             ...+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         1 l~~~~l~~~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   59 (220)
T cd03263           1 LQIRNLTKTYKKG-------------TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA   59 (220)
T ss_pred             CEEEeeEEEeCCC-------------CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            4688999999532             0258999999999999999999999999999999999999999986

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.44  E-value=1.7e-13  Score=134.07  Aligned_cols=59  Identities=22%  Similarity=0.413  Sum_probs=53.3

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ++++|++|.|++.              ..+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+++
T Consensus         2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   60 (274)
T PRK13644          2 IRLENVSYSYPDG--------------TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL   60 (274)
T ss_pred             EEEEEEEEEcCCC--------------CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence            6789999999532              1489999999999999999999999999999999999999999863

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=2e-13  Score=130.42  Aligned_cols=64  Identities=22%  Similarity=0.431  Sum_probs=55.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +.+++++++|.|+++.           +...+++++||++++||+++|+|+|||||||++++|+|+++|++|+++
T Consensus         4 ~~l~~~~l~~~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~   67 (233)
T PRK11629          4 ILLQCDNLCKRYQEGS-----------VQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI   67 (233)
T ss_pred             ceEEEEeEEEEcCCCC-----------cceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            3589999999996421           012599999999999999999999999999999999999999999863

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=2e-13  Score=133.84  Aligned_cols=59  Identities=27%  Similarity=0.507  Sum_probs=53.7

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++|++|.|++.              ..+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus         3 ~l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i   61 (277)
T PRK13652          3 LIETRDLCYSYSGS--------------KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV   61 (277)
T ss_pred             eEEEEEEEEEeCCC--------------CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            47899999999532              148999999999999999999999999999999999999999986

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.43  E-value=1.8e-13  Score=124.35  Aligned_cols=59  Identities=22%  Similarity=0.466  Sum_probs=52.6

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++..             ..+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         1 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i   59 (171)
T cd03228           1 IEFKNVSFSYPGRP-------------KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI   59 (171)
T ss_pred             CEEEEEEEEcCCCC-------------cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE
Confidence            36789999995421             148999999999999999999999999999999999999999976

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=2.5e-13  Score=132.67  Aligned_cols=63  Identities=25%  Similarity=0.409  Sum_probs=55.9

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .+.+++++++|.|++..             +.+++|+||++++||+++|+|+|||||||++++|+|+++|++|+++
T Consensus         5 ~~~l~i~~l~~~~~~~~-------------~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~   67 (269)
T PRK13648          5 NSIIVFKNVSFQYQSDA-------------SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF   67 (269)
T ss_pred             CceEEEEEEEEEcCCCC-------------CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            44699999999996421             1489999999999999999999999999999999999999999763

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=99.43  E-value=2.4e-13  Score=128.78  Aligned_cols=61  Identities=25%  Similarity=0.479  Sum_probs=53.8

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++..           +...+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         2 l~~~~v~~~~~~~~-----------~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   62 (221)
T TIGR02211         2 LKCENLGKRYQEGK-----------LDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV   62 (221)
T ss_pred             EEEEeeeEEccCCC-----------cceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            67899999995421           11258999999999999999999999999999999999999999986

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.43  E-value=2.2e-13  Score=129.24  Aligned_cols=58  Identities=24%  Similarity=0.457  Sum_probs=52.7

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++|++|.|++.              ..+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   59 (222)
T PRK10908          2 IRFEHVSKAYLGG--------------RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI   59 (222)
T ss_pred             EEEEeeEEEecCC--------------CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            6789999999421              158999999999999999999999999999999999999999986

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.43  E-value=2.2e-13  Score=132.98  Aligned_cols=60  Identities=22%  Similarity=0.385  Sum_probs=55.0

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..++++|++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         5 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   64 (269)
T PRK11831          5 ANLVDMRGVSFTRGNR---------------CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI   64 (269)
T ss_pred             cceEEEeCeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            3579999999999531               58999999999999999999999999999999999999999986

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.43  E-value=2.4e-13  Score=132.40  Aligned_cols=60  Identities=23%  Similarity=0.416  Sum_probs=55.3

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..+++++++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus         9 ~~~l~i~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   68 (265)
T PRK10575          9 DTTFALRNVSFRVPGR---------------TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI   68 (265)
T ss_pred             CceEEEeeEEEEECCE---------------EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE
Confidence            4579999999999531               58999999999999999999999999999999999999999986

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.42  E-value=6.1e-14  Score=123.72  Aligned_cols=67  Identities=27%  Similarity=0.440  Sum_probs=58.8

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++||+|+|....+.      .++..+.||+.+||++++||..+++|.||+||||+-+||+|+.+||+|++
T Consensus         4 LLeV~nLsKtF~~~~~l------f~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~i   70 (267)
T COG4167           4 LLEVRNLSKTFRYRTGL------FRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEI   70 (267)
T ss_pred             hhhhhhhhhhhhhhhhh------hhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceE
Confidence            47889999999765432      23456789999999999999999999999999999999999999999986

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.42  E-value=2e-13  Score=131.06  Aligned_cols=58  Identities=33%  Similarity=0.623  Sum_probs=53.5

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i   60 (241)
T PRK10895          3 TLTAKNLAKAYKGR---------------RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI   60 (241)
T ss_pred             eEEEeCcEEEeCCE---------------EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            47899999999531               58999999999999999999999999999999999999999976

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.42  E-value=2.6e-13  Score=133.64  Aligned_cols=64  Identities=17%  Similarity=0.330  Sum_probs=55.0

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .++++||+|.|++...          ..+.+++|+||++++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus         2 ~l~~~~l~~~y~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~   65 (286)
T PRK13646          2 TIRFDNVSYTYQKGTP----------YEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVT   65 (286)
T ss_pred             EEEEEEEEEEECCCCc----------cccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            3789999999953210          112599999999999999999999999999999999999999999863

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.42  E-value=2.4e-13  Score=130.68  Aligned_cols=58  Identities=34%  Similarity=0.562  Sum_probs=53.5

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++|++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         2 ~i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i   59 (242)
T TIGR03411         2 ILYLEGLSVSFDGF---------------KALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSV   59 (242)
T ss_pred             eEEEEeeEEEcCCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence            47899999999531               58999999999999999999999999999999999999999986

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=99.42  E-value=2.8e-13  Score=128.94  Aligned_cols=63  Identities=21%  Similarity=0.399  Sum_probs=55.3

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+++++++|.|++..           ....+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         5 ~~l~~~~l~~~~~~~~-----------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i   67 (228)
T PRK10584          5 NIVEVHHLKKSVGQGE-----------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV   67 (228)
T ss_pred             ceEEEeeeEEEccCCC-----------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeE
Confidence            4689999999996421           01248999999999999999999999999999999999999999976

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.42  E-value=1.5e-13  Score=131.65  Aligned_cols=72  Identities=32%  Similarity=0.472  Sum_probs=54.2

Q ss_pred             EEEecceEEcCCCCcccc------ccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGC------CCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~------~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++|++|.|....+.+.      ....++...+.+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i   78 (236)
T cd03267           1 IEVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV   78 (236)
T ss_pred             CceecchhhccCcCCccccchhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence            356777777755221000      000122234569999999999999999999999999999999999999999986

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.42  E-value=2.9e-13  Score=126.47  Aligned_cols=62  Identities=23%  Similarity=0.254  Sum_probs=55.3

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~---pTsG~a  478 (479)
                      .+.++|++|.|+.++           ....+++++||++++||+++|+|+|||||||++++|+|+.+   |++|++
T Consensus         3 ~~~~~~~~~~~~~~~-----------~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i   67 (202)
T cd03233           3 TLSWRNISFTTGKGR-----------SKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDI   67 (202)
T ss_pred             eEEEEccEEEeccCC-----------CCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEE
Confidence            578999999997542           22369999999999999999999999999999999999999   899976

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.42  E-value=2.7e-13  Score=131.19  Aligned_cols=58  Identities=24%  Similarity=0.546  Sum_probs=53.9

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++|++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   60 (253)
T TIGR02323         3 LLQVSGLSKSYGGG---------------KGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA   60 (253)
T ss_pred             eEEEeeeEEEeCCc---------------eEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            58999999999532               48999999999999999999999999999999999999999986

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=99.42  E-value=2.7e-13  Score=136.72  Aligned_cols=60  Identities=30%  Similarity=0.508  Sum_probs=55.3

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ...+++++|+|.|++.               .|++|+||++.+||+++|+|||||||||++++|+|+.+|++|++
T Consensus         4 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I   63 (351)
T PRK11432          4 KNFVVLKNITKRFGSN---------------TVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI   63 (351)
T ss_pred             CcEEEEEeEEEEECCe---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE
Confidence            3479999999999532               58999999999999999999999999999999999999999986

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.42  E-value=3.5e-13  Score=131.43  Aligned_cols=67  Identities=28%  Similarity=0.429  Sum_probs=55.6

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++||+|.|++....      ++.+.+.+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         4 ~l~~~~l~~~~~~~~~~------~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i   70 (267)
T PRK15112          4 LLEVRNLSKTFRYRTGW------FRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL   70 (267)
T ss_pred             eEEEeceEEEecCCCCc------ccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEE
Confidence            58999999999532100      01112369999999999999999999999999999999999999999986

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.42  E-value=3.2e-13  Score=127.72  Aligned_cols=69  Identities=25%  Similarity=0.387  Sum_probs=59.0

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..++++||+|.|..+...      ++...+.||||+||+|++||++||+|.+|+||||+=++|+|+++||+|+++
T Consensus         3 ~ll~v~~l~k~f~~~~~~------~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~   71 (268)
T COG4608           3 PLLEVKNLKKYFPVGKGF------GKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEIL   71 (268)
T ss_pred             ceEEEeccEEEEeccccc------CcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEE
Confidence            468999999999754210      122246899999999999999999999999999999999999999999874

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=99.41  E-value=2.5e-13  Score=129.72  Aligned_cols=61  Identities=30%  Similarity=0.610  Sum_probs=53.6

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++|++|.|++..           +...+++++||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         2 i~~~~l~~~~~~~~-----------~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i   62 (233)
T cd03258           2 IELKNVSKVFGDTG-----------GKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV   62 (233)
T ss_pred             eEEecceEEccCCC-----------CceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            67899999995320           01258999999999999999999999999999999999999999986

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.41  E-value=3.2e-13  Score=126.13  Aligned_cols=58  Identities=28%  Similarity=0.625  Sum_probs=54.4

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+.+++++|.|++               ..|++|+||+|.+||+++++||.|+||||++++|+|+.+||+|++
T Consensus         3 ~l~i~~v~~~f~~---------------~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V   60 (248)
T COG1116           3 LLEIEGVSKSFGG---------------VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV   60 (248)
T ss_pred             eEEEEeeEEEeCc---------------eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            5889999999964               279999999999999999999999999999999999999999986

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=2.7e-13  Score=136.78  Aligned_cols=61  Identities=28%  Similarity=0.590  Sum_probs=53.9

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++||+|.|+++.           +.+.+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus         2 i~i~~l~~~y~~~~-----------~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I   62 (343)
T PRK11153          2 IELKNISKVFPQGG-----------RTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRV   62 (343)
T ss_pred             EEEEeEEEEeCCCC-----------CceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence            68999999996311           11269999999999999999999999999999999999999999986

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=3e-13  Score=130.98  Aligned_cols=59  Identities=37%  Similarity=0.685  Sum_probs=54.5

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|++|.|++.               .+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         4 ~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i   62 (255)
T PRK11300          4 PLLSVSGLMMRFGGL---------------LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTI   62 (255)
T ss_pred             ceEEEeeEEEEECCE---------------EEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceE
Confidence            369999999999532               58999999999999999999999999999999999999999986

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.41  E-value=2.8e-13  Score=131.42  Aligned_cols=58  Identities=26%  Similarity=0.495  Sum_probs=53.5

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         2 ~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i   59 (258)
T PRK13548          2 MLEARNLSVRLGGR---------------TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV   59 (258)
T ss_pred             eEEEEeEEEEeCCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence            37899999999532               58999999999999999999999999999999999999999986

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=3e-13  Score=129.55  Aligned_cols=58  Identities=26%  Similarity=0.420  Sum_probs=53.8

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++++|.|++.               .+++++||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus         5 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i   62 (237)
T PRK11614          5 MLSFDKVSAHYGKI---------------QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI   62 (237)
T ss_pred             EEEEEeEEEeeCCc---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE
Confidence            58899999999532               58999999999999999999999999999999999999999975

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=99.41  E-value=3.4e-13  Score=127.50  Aligned_cols=61  Identities=33%  Similarity=0.544  Sum_probs=53.7

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++|++|.|++..           +...+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         2 l~~~~v~~~~~~~~-----------~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   62 (218)
T cd03266           2 ITADALTKRFRDVK-----------KTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA   62 (218)
T ss_pred             eEEEEEEEecCCCC-----------ccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence            67899999996421           11258999999999999999999999999999999999999999986

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=3.9e-13  Score=132.66  Aligned_cols=64  Identities=19%  Similarity=0.402  Sum_probs=55.3

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|++|.|+++..          ....+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus         5 ~~l~i~nl~~~~~~~~~----------~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i   68 (289)
T PRK13645          5 KDIILDNVSYTYAKKTP----------FEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQT   68 (289)
T ss_pred             ceEEEEEEEEEeCCCCc----------cccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            35899999999954210          01248999999999999999999999999999999999999999986

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=3.6e-13  Score=132.45  Aligned_cols=60  Identities=33%  Similarity=0.525  Sum_probs=54.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|++|.|+++              +.+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus         4 ~~l~~~~l~~~~~~~--------------~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i   63 (283)
T PRK13636          4 YILKVEELNYNYSDG--------------THALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI   63 (283)
T ss_pred             ceEEEEeEEEEeCCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEE
Confidence            468999999999522              159999999999999999999999999999999999999999986

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.41  E-value=4e-13  Score=129.70  Aligned_cols=58  Identities=24%  Similarity=0.464  Sum_probs=53.9

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++|+|.|++.               .+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         4 ~l~~~~l~~~~~~~---------------~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i   61 (251)
T PRK09544          4 LVSLENVSVSFGQR---------------RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI   61 (251)
T ss_pred             EEEEeceEEEECCc---------------eEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            58899999999532               58999999999999999999999999999999999999999986

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=3.4e-13  Score=132.03  Aligned_cols=59  Identities=34%  Similarity=0.491  Sum_probs=54.1

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++++|.|++.              ..+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus         4 ~l~~~~l~~~~~~~--------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   62 (274)
T PRK13647          4 IIEVEDLHFRYKDG--------------TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV   62 (274)
T ss_pred             eEEEEEEEEEeCCC--------------CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE
Confidence            58999999999532              159999999999999999999999999999999999999999986

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.41  E-value=3.8e-13  Score=133.36  Aligned_cols=62  Identities=24%  Similarity=0.446  Sum_probs=54.5

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++||+|.|++..          .....|++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         3 i~~~~l~~~y~~~~----------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i   64 (305)
T PRK13651          3 IKVKNIVKIFNKKL----------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI   64 (305)
T ss_pred             EEEEEEEEEECCCC----------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence            78999999996431          011259999999999999999999999999999999999999999986

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.40  E-value=3e-13  Score=128.69  Aligned_cols=61  Identities=25%  Similarity=0.449  Sum_probs=53.4

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++..           +...+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         2 l~~~~v~~~~~~~~-----------~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   62 (228)
T cd03257           2 LEVKNLSVSFPTGG-----------GSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSI   62 (228)
T ss_pred             eEEEeeeEeccCCC-----------cceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            67899999995321           11258999999999999999999999999999999999999999976

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.40  E-value=5.3e-13  Score=133.18  Aligned_cols=66  Identities=17%  Similarity=0.417  Sum_probs=56.9

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +..++++|+++.|++...          ....+++|+||++++||++||+|+|||||||++++|+|+++|++|+++
T Consensus        19 ~~~l~~~nl~~~y~~~~~----------~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~   84 (320)
T PRK13631         19 DIILRVKNLYCVFDEKQE----------NELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQ   84 (320)
T ss_pred             CceEEEEeEEEEeCCCCc----------ccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence            457999999999964210          112599999999999999999999999999999999999999999863

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.40  E-value=3.7e-13  Score=132.19  Aligned_cols=63  Identities=19%  Similarity=0.323  Sum_probs=54.5

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++++|.|++...          ..+.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         2 ~l~~~~l~~~~~~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i   64 (280)
T PRK13649          2 GINLQNVSYTYQAGTP----------FEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSV   64 (280)
T ss_pred             eEEEEEEEEEcCCCCc----------cccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            4789999999964210          01258999999999999999999999999999999999999999986

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.40  E-value=3.4e-13  Score=121.94  Aligned_cols=58  Identities=24%  Similarity=0.418  Sum_probs=52.1

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++.              ..+++++||++++||+.+++|+|||||||++++|+|+.+|++|++
T Consensus         1 i~~~~~~~~~~~~--------------~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   58 (166)
T cd03223           1 IELENLSLATPDG--------------RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI   58 (166)
T ss_pred             CEEEEEEEEcCCC--------------CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            3678999999532              148999999999999999999999999999999999999999986

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.40  E-value=4.3e-13  Score=132.30  Aligned_cols=62  Identities=19%  Similarity=0.337  Sum_probs=54.3

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++|+|.|++..          .....+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         3 l~~~~l~~~y~~~~----------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   64 (290)
T PRK13634          3 ITFQKVEHRYQYKT----------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV   64 (290)
T ss_pred             EEEEEEEEEECCCC----------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence            78999999996421          011259999999999999999999999999999999999999999986

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.40  E-value=4.1e-13  Score=127.47  Aligned_cols=64  Identities=23%  Similarity=0.335  Sum_probs=54.2

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++|++|.|++..+        .+..+.+++|+||++.+||+++|+|+|||||||++++|+|+++|++|++
T Consensus         2 l~~~~l~~~~~~~~~--------~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i   65 (224)
T TIGR02324         2 LEVEDLSKTFTLHQQ--------GGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRI   65 (224)
T ss_pred             EEEEeeEEEeecccC--------CCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence            678999999964210        0011369999999999999999999999999999999999999999976

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.40  E-value=3.8e-13  Score=135.92  Aligned_cols=59  Identities=31%  Similarity=0.569  Sum_probs=54.2

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .+++++|+|.|++.               .+++|+||++++||+++|+|+|||||||+++||+|+.+|++|+++
T Consensus         2 ~L~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~   60 (353)
T PRK10851          2 SIEIANIKKSFGRT---------------QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIR   60 (353)
T ss_pred             EEEEEEEEEEeCCe---------------EEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            47899999999532               599999999999999999999999999999999999999999863

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.40  E-value=3.9e-13  Score=131.49  Aligned_cols=59  Identities=20%  Similarity=0.380  Sum_probs=54.1

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++++|.|+++              ..+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus         6 ~l~~~~l~~~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i   64 (272)
T PRK15056          6 GIVVNDVTVTWRNG--------------HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI   64 (272)
T ss_pred             eEEEEeEEEEecCC--------------cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            58999999999532              158999999999999999999999999999999999999999986

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.40  E-value=3.2e-13  Score=129.04  Aligned_cols=59  Identities=22%  Similarity=0.483  Sum_probs=52.7

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++..             +.+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         1 i~~~~l~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   59 (234)
T cd03251           1 VEFKNVTFRYPGDG-------------PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI   59 (234)
T ss_pred             CEEEEEEEEeCCCC-------------ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEE
Confidence            46889999995421             248999999999999999999999999999999999999999986

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.40  E-value=3.1e-13  Score=129.88  Aligned_cols=58  Identities=28%  Similarity=0.629  Sum_probs=52.6

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|+.+              ..+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         2 l~~~~l~~~~~~~--------------~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i   59 (243)
T TIGR02315         2 LEVENLSKVYPNG--------------KQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI   59 (243)
T ss_pred             eEEEeeeeecCCC--------------cceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEE
Confidence            6789999999511              158999999999999999999999999999999999999999986

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.40  E-value=3.9e-13  Score=129.13  Aligned_cols=58  Identities=22%  Similarity=0.430  Sum_probs=53.4

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++|++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   60 (241)
T PRK14250          3 EIEFKEVSYSSFGK---------------EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI   60 (241)
T ss_pred             eEEEEeEEEEeCCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            37899999999532               58999999999999999999999999999999999999999976

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.40  E-value=4.6e-13  Score=129.94  Aligned_cols=59  Identities=20%  Similarity=0.411  Sum_probs=54.4

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+++++++|.|++.               .+++++||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         5 ~~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   63 (258)
T PRK11701          5 PLLSVRGLTKLYGPR---------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV   63 (258)
T ss_pred             ceEEEeeeEEEcCCc---------------eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence            358999999999532               58999999999999999999999999999999999999999986

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.40  E-value=4.9e-13  Score=130.68  Aligned_cols=62  Identities=26%  Similarity=0.501  Sum_probs=55.5

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ...++++|++|.|++..             +.+++|+||++.+||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         5 ~~~l~~~nl~~~~~~~~-------------~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I   66 (271)
T PRK13632          5 SVMIKVENVSFSYPNSE-------------NNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI   66 (271)
T ss_pred             ceEEEEEeEEEEcCCCC-------------ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            45699999999995321             158999999999999999999999999999999999999999986

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=99.40  E-value=3.7e-13  Score=136.16  Aligned_cols=60  Identities=27%  Similarity=0.626  Sum_probs=54.1

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .+++++++|.|++.              +.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+++
T Consensus         3 ~l~i~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~   62 (356)
T PRK11650          3 GLKLQAVRKSYDGK--------------TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIW   62 (356)
T ss_pred             EEEEEeEEEEeCCC--------------CEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEE
Confidence            48899999999321              1599999999999999999999999999999999999999999863

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.40  E-value=4.3e-13  Score=122.68  Aligned_cols=59  Identities=25%  Similarity=0.443  Sum_probs=52.4

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++..             ..+++|+||++++||+++++|+|||||||++++|+|+.+|++|++
T Consensus         1 i~~~~~~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i   59 (178)
T cd03247           1 LSINNVSFSYPEQE-------------QQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI   59 (178)
T ss_pred             CEEEEEEEEeCCCC-------------ccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEE
Confidence            36789999995421             148999999999999999999999999999999999999999976

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.40  E-value=5.4e-13  Score=126.82  Aligned_cols=64  Identities=19%  Similarity=0.374  Sum_probs=56.5

Q ss_pred             CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ....++++++++.|+++.            .+.+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         8 ~~~~l~~~~l~~~~~~~~------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   71 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRP------------DTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV   71 (226)
T ss_pred             cCceEEEEEEEEEeCCCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEE
Confidence            356799999999996421            1258999999999999999999999999999999999999999976

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.40  E-value=4e-13  Score=125.69  Aligned_cols=62  Identities=21%  Similarity=0.397  Sum_probs=53.1

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++||+|.|++..          .+...+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         1 l~~~~l~~~~~~~~----------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i   62 (204)
T cd03250           1 ISVEDASFTWDSGE----------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV   62 (204)
T ss_pred             CEEeEEEEecCCCC----------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE
Confidence            46889999995421          000258999999999999999999999999999999999999999986

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=99.40  E-value=3.8e-13  Score=136.86  Aligned_cols=58  Identities=26%  Similarity=0.558  Sum_probs=53.8

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++|+|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         3 ~l~i~~l~~~~~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I   60 (369)
T PRK11000          3 SVTLRNVTKAYGDV---------------VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDL   60 (369)
T ss_pred             EEEEEEEEEEeCCe---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence            48899999999532               58999999999999999999999999999999999999999986

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.39  E-value=3.8e-13  Score=129.88  Aligned_cols=58  Identities=28%  Similarity=0.639  Sum_probs=53.5

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++|+|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   60 (250)
T PRK11264          3 AIEVKNLVKKFHGQ---------------TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTI   60 (250)
T ss_pred             cEEEeceEEEECCe---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence            48899999999532               58999999999999999999999999999999999999999976

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=99.39  E-value=4.5e-13  Score=135.36  Aligned_cols=58  Identities=33%  Similarity=0.596  Sum_probs=54.1

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++||+|.|++.               .+++|+||++++||+++|+|||||||||+++||+|+.+|++|++
T Consensus         4 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I   61 (353)
T TIGR03265         4 YLSIDNIRKRFGAF---------------TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI   61 (353)
T ss_pred             EEEEEEEEEEeCCe---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEE
Confidence            58999999999532               58999999999999999999999999999999999999999986

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.39  E-value=5e-13  Score=130.88  Aligned_cols=58  Identities=36%  Similarity=0.608  Sum_probs=53.0

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++.              +.+++|+||++.+||++||+|+|||||||++++|+|+.+|++|++
T Consensus         2 l~~~~l~~~~~~~--------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i   59 (275)
T PRK13639          2 LETRDLKYSYPDG--------------TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV   59 (275)
T ss_pred             EEEEEEEEEeCCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE
Confidence            6789999999532              148999999999999999999999999999999999999999986

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.39  E-value=5.2e-13  Score=131.61  Aligned_cols=63  Identities=21%  Similarity=0.329  Sum_probs=54.4

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +++++++|.|++..          ...+.+++|+||++++||+++|+|+|||||||++++|+|+++|++|+++
T Consensus         2 i~~~~v~~~y~~~~----------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~   64 (288)
T PRK13643          2 IKFEKVNYTYQPNS----------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVT   64 (288)
T ss_pred             EEEEEEEEEeCCCC----------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEE
Confidence            68899999996321          0112599999999999999999999999999999999999999999863

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.39  E-value=5.1e-13  Score=123.80  Aligned_cols=63  Identities=22%  Similarity=0.468  Sum_probs=56.7

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .+.++||+|+|+++..           .++||||+||++.+|||+||+|+.|+||||+.++|.|+.+|++|+++
T Consensus         3 ~l~v~nl~~~y~~~~~-----------~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~   65 (252)
T COG1124           3 LLSVRNLSIVYGGGKF-----------AFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSIL   65 (252)
T ss_pred             eEEEeceEEEecCCcc-----------hhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEE
Confidence            5899999999976532           22699999999999999999999999999999999999999999873

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.39  E-value=5.1e-13  Score=130.18  Aligned_cols=60  Identities=22%  Similarity=0.345  Sum_probs=55.3

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ...+++++++|.|++.               .+++|+||++.+||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         5 ~~~l~i~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   64 (265)
T PRK10253          5 VARLRGEQLTLGYGKY---------------TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV   64 (265)
T ss_pred             ccEEEEEEEEEEECCE---------------EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEE
Confidence            4579999999999532               58999999999999999999999999999999999999999975

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.39  E-value=6.9e-13  Score=130.24  Aligned_cols=64  Identities=16%  Similarity=0.362  Sum_probs=55.4

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++|++|.|++...         ...+.+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         4 ~l~~~~l~~~~~~~~~---------~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i   67 (280)
T PRK13633          4 MIKCKNVSYKYESNEE---------STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV   67 (280)
T ss_pred             eEEEeeeEEEcCCCCC---------CCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            5899999999964210         012359999999999999999999999999999999999999999976

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.39  E-value=6.2e-13  Score=130.49  Aligned_cols=61  Identities=16%  Similarity=0.422  Sum_probs=54.6

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++|++|.|++..            ...+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus         4 ~l~~~~l~~~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   64 (279)
T PRK13650          4 IIEVKNLTFKYKEDQ------------EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI   64 (279)
T ss_pred             eEEEEeEEEEcCCCC------------cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            589999999995321            1259999999999999999999999999999999999999999986

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.39  E-value=7.2e-13  Score=129.32  Aligned_cols=60  Identities=20%  Similarity=0.437  Sum_probs=53.8

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a  478 (479)
                      +..++++|++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+.+     |++|++
T Consensus        19 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   83 (268)
T PRK14248         19 EHILEVKDLSIYYGEK---------------RAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI   83 (268)
T ss_pred             CceEEEEEEEEEeCCc---------------eeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEE
Confidence            4579999999999532               58999999999999999999999999999999999864     789975

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.38  E-value=5.3e-13  Score=129.30  Aligned_cols=58  Identities=21%  Similarity=0.486  Sum_probs=53.3

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++++|.|++.               .+++++||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         2 ~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i   59 (255)
T PRK11231          2 TLRTENLTVGYGTK---------------RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV   59 (255)
T ss_pred             EEEEEeEEEEECCE---------------EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE
Confidence            37899999999531               58999999999999999999999999999999999999999975

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.38  E-value=5.6e-13  Score=128.08  Aligned_cols=58  Identities=22%  Similarity=0.419  Sum_probs=53.3

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++++|.|++.               .+++|+||++++||+.+|+|+|||||||++++|+|+.+|++|++
T Consensus         2 ~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   59 (242)
T PRK11124          2 SIQLNGINCFYGAH---------------QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL   59 (242)
T ss_pred             EEEEEeeEEEECCe---------------eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            37889999999532               58999999999999999999999999999999999999999976

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.38  E-value=5.9e-13  Score=123.55  Aligned_cols=65  Identities=26%  Similarity=0.394  Sum_probs=55.3

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~--~pTsG~a  478 (479)
                      ..+++++++|.|++..         +.....+++++||++++||+++|+|+||+||||++++|+|+.  +|++|++
T Consensus         2 ~~l~~~~ls~~~~~~~---------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i   68 (194)
T cd03213           2 VTLSFRNLTVTVKSSP---------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV   68 (194)
T ss_pred             cEEEEEeeEEEEecCC---------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE
Confidence            3589999999996421         001135999999999999999999999999999999999999  9999976

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.38  E-value=5.4e-13  Score=127.78  Aligned_cols=59  Identities=12%  Similarity=0.202  Sum_probs=52.6

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++..             ..+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         1 i~~~~l~~~~~~~~-------------~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   59 (237)
T cd03252           1 ITFEHVRFRYKPDG-------------PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV   59 (237)
T ss_pred             CEEEEEEEecCCCC-------------ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence            46789999995321             258999999999999999999999999999999999999999986

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.38  E-value=6.3e-13  Score=121.04  Aligned_cols=59  Identities=20%  Similarity=0.470  Sum_probs=52.6

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++|++|.|++..             ..+++++||.+++||+++|+|+||+||||++++|+|+.+|++|++
T Consensus         1 i~~~~l~~~~~~~~-------------~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i   59 (173)
T cd03246           1 LEVENVSFRYPGAE-------------PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV   59 (173)
T ss_pred             CEEEEEEEEcCCCC-------------CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence            36789999995421             258999999999999999999999999999999999999999976

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.38  E-value=5.9e-13  Score=136.06  Aligned_cols=74  Identities=23%  Similarity=0.338  Sum_probs=58.0

Q ss_pred             eEEEecceEEcCCCCccc------ccc---ccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          406 AVQIRGLVKTFPGTRKIG------CCC---KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~------~~~---~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      .|+++||+|.|+......      +..   ..++.+...|++|+||++++||+++|+|+|||||||++++|+|+++|++|
T Consensus         4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG   83 (400)
T PRK10070          4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG   83 (400)
T ss_pred             EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence            589999999997642100      000   01223344699999999999999999999999999999999999999999


Q ss_pred             ccC
Q 011717          477 DGC  479 (479)
Q Consensus       477 ~a~  479 (479)
                      +++
T Consensus        84 ~I~   86 (400)
T PRK10070         84 QVL   86 (400)
T ss_pred             EEE
Confidence            863

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.38  E-value=7e-13  Score=125.55  Aligned_cols=63  Identities=24%  Similarity=0.392  Sum_probs=54.8

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ++++++++|.|+++.           +.+.+++++||++++||+++++|+|||||||++++|+|+++|++|+++
T Consensus         1 ~l~~~~l~~~~~~~~-----------~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~   63 (220)
T TIGR02982         1 VISIRNLNHYYGHGS-----------LRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLK   63 (220)
T ss_pred             CEEEEEEEEEccCCC-----------cceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            368899999995421           123699999999999999999999999999999999999999999763

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.38  E-value=5.9e-13  Score=121.21  Aligned_cols=57  Identities=33%  Similarity=0.624  Sum_probs=51.8

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++.               .+++++||++++||+++|+|+||+||||++++|+|+.+|++|++
T Consensus         1 l~~~~l~~~~~~~---------------~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i   57 (173)
T cd03230           1 IEVRNLSKRYGKK---------------TALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI   57 (173)
T ss_pred             CEEEEEEEEECCe---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            3578999999531               48999999999999999999999999999999999999999976

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.38  E-value=6.2e-13  Score=122.80  Aligned_cols=61  Identities=21%  Similarity=0.508  Sum_probs=56.8

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ...|++++|+|.|++.               +..+|++|+|++||+++++|+.|+||||+++.|.|+.+|++|++.
T Consensus         6 ~~~I~vr~v~~~fG~~---------------~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~   66 (263)
T COG1127           6 EPLIEVRGVTKSFGDR---------------VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL   66 (263)
T ss_pred             cceEEEeeeeeecCCE---------------EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEE
Confidence            5689999999999653               689999999999999999999999999999999999999999873

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.38  E-value=5.4e-13  Score=130.00  Aligned_cols=67  Identities=19%  Similarity=0.311  Sum_probs=55.0

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++|+|.|++....      +++..+.+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus         2 ~l~~~~l~~~~~~~~~~------~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   68 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLF------GAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV   68 (265)
T ss_pred             eEEEEeEEEEeccCccc------cccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            47899999999532100      00112369999999999999999999999999999999999999999986

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.38  E-value=6.5e-13  Score=125.72  Aligned_cols=59  Identities=22%  Similarity=0.442  Sum_probs=53.4

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++.             .+.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         3 l~~~~l~~~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   61 (220)
T cd03245           3 IEFRNVSFSYPNQ-------------EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV   61 (220)
T ss_pred             EEEEEEEEEcCCC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE
Confidence            7899999999532             1258999999999999999999999999999999999999999986

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.38  E-value=6.1e-13  Score=120.97  Aligned_cols=59  Identities=29%  Similarity=0.671  Sum_probs=54.9

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .|+++||+|.|++.               .+++|+||+|.+||+++++||.|+||||++++|.|+.+|++|+++
T Consensus         2 mi~i~~l~K~fg~~---------------~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~   60 (240)
T COG1126           2 MIEIKNLSKSFGDK---------------EVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT   60 (240)
T ss_pred             eEEEEeeeEEeCCe---------------EEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEE
Confidence            48899999999643               699999999999999999999999999999999999999999863

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.38  E-value=6.5e-13  Score=125.80  Aligned_cols=59  Identities=14%  Similarity=0.298  Sum_probs=53.6

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++|++|.|++..             +.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         3 l~~~~l~~~~~~~~-------------~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   61 (221)
T cd03244           3 IEFKNVSLRYRPNL-------------PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI   61 (221)
T ss_pred             EEEEEEEEecCCCC-------------cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE
Confidence            78999999996421             158999999999999999999999999999999999999999976

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=99.38  E-value=6.4e-13  Score=134.50  Aligned_cols=58  Identities=26%  Similarity=0.508  Sum_probs=53.9

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC--ccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG--GDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs--G~a  478 (479)
                      .+++++++|.|++.               .|++|+||++.+||+++|+|||||||||+++||+|+.+|++  |++
T Consensus         5 ~l~~~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i   64 (362)
T TIGR03258         5 GIRIDHLRVAYGAN---------------TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRI   64 (362)
T ss_pred             EEEEEEEEEEECCe---------------EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEE
Confidence            48999999999532               59999999999999999999999999999999999999999  976

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.38  E-value=6.7e-13  Score=128.73  Aligned_cols=59  Identities=19%  Similarity=0.415  Sum_probs=54.3

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+++++|+|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         4 ~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i   62 (257)
T PRK10619          4 NKLNVIDLHKRYGEH---------------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSI   62 (257)
T ss_pred             ccEEEeeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            358999999999532               58999999999999999999999999999999999999999976

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.38  E-value=6.4e-13  Score=129.70  Aligned_cols=60  Identities=22%  Similarity=0.513  Sum_probs=54.2

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a  478 (479)
                      +..+++++++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+     |++|++
T Consensus        11 ~~~l~i~nl~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v   75 (269)
T PRK14259         11 NIIISLQNVTISYGTF---------------EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRV   75 (269)
T ss_pred             CceEEEEeEEEEECCE---------------EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence            4579999999999532               58999999999999999999999999999999999987     689976

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.38  E-value=8.2e-13  Score=128.36  Aligned_cols=75  Identities=24%  Similarity=0.312  Sum_probs=58.6

Q ss_pred             CceEEEecceEEcCCCCc-ccccc--c--cCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRK-IGCCC--K--CQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~-~~~~~--~--~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..|.++||+|.|...+. .+.-.  .  .++...+.+++++||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I   81 (264)
T PRK13546          2 NVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKV   81 (264)
T ss_pred             CceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence            356899999999976321 00000  0  012245579999999999999999999999999999999999999999976

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.37  E-value=6.8e-13  Score=128.36  Aligned_cols=60  Identities=25%  Similarity=0.495  Sum_probs=53.6

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a  478 (479)
                      ++.+++++++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+.+     |++|++
T Consensus         4 ~~~l~~~~l~~~~~~~---------------~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   68 (253)
T PRK14242          4 PPKMEARGLSFFYGDF---------------QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEI   68 (253)
T ss_pred             CcEEEEeeeEEEECCe---------------eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEE
Confidence            4679999999999531               58999999999999999999999999999999999864     689976

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=99.37  E-value=3.7e-13  Score=128.26  Aligned_cols=58  Identities=29%  Similarity=0.544  Sum_probs=53.4

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++++|.|++.               .|++|++|+|+.||.++|||||||||||++++|+|++.||+|++
T Consensus         2 ~i~i~~~~~~~~~~---------------~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I   59 (345)
T COG1118           2 SIRINNVKKRFGAF---------------GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI   59 (345)
T ss_pred             ceeehhhhhhcccc---------------cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE
Confidence            37888999999542               69999999999999999999999999999999999999999986

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.37  E-value=1.2e-12  Score=131.17  Aligned_cols=69  Identities=26%  Similarity=0.403  Sum_probs=57.1

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++||+|.|+...+.  .   ++++.+.||+|+||+|++||++||+|+||+||||++++|+|+++|++|++
T Consensus         4 ~~l~v~nl~~~~~~~~~~--~---~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i   72 (327)
T PRK11308          4 PLLQAIDLKKHYPVKRGL--F---KPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGEL   72 (327)
T ss_pred             ceEEEeeeEEEEcCCCCc--c---ccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEE
Confidence            468999999999642110  0   01123479999999999999999999999999999999999999999986

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.37  E-value=7.5e-13  Score=126.09  Aligned_cols=59  Identities=22%  Similarity=0.349  Sum_probs=53.5

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++|++|.|++.              ..+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         2 ~l~~~~l~~~~~~~--------------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   60 (229)
T cd03254           2 EIEFENVNFSYDEK--------------KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI   60 (229)
T ss_pred             eEEEEEEEEecCCC--------------CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence            37899999999532              148999999999999999999999999999999999999999986

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.37  E-value=5.5e-13  Score=135.39  Aligned_cols=73  Identities=16%  Similarity=0.323  Sum_probs=57.3

Q ss_pred             EEEecceEEcCCCCccc------ccc---ccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          407 VQIRGLVKTFPGTRKIG------CCC---KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~------~~~---~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      |+++||.|.|+.....-      +..   ..++.+.+.||+|+||++++||+++|+|+|||||||++++|+|+++|++|+
T Consensus         1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~   80 (382)
T TIGR03415         1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS   80 (382)
T ss_pred             CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence            46788888886532100      000   013455678999999999999999999999999999999999999999998


Q ss_pred             cC
Q 011717          478 GC  479 (479)
Q Consensus       478 a~  479 (479)
                      ++
T Consensus        81 I~   82 (382)
T TIGR03415        81 VL   82 (382)
T ss_pred             EE
Confidence            63

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.37  E-value=9.8e-13  Score=123.33  Aligned_cols=61  Identities=18%  Similarity=0.260  Sum_probs=54.8

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+++++++|.|++..             ..+++++||++++||+++|+|+||+||||++++|+|+.+|++|++
T Consensus         5 ~~l~~~~l~~~~~~~~-------------~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   65 (207)
T cd03369           5 GEIEVENLSVRYAPDL-------------PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI   65 (207)
T ss_pred             CeEEEEEEEEEeCCCC-------------cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE
Confidence            4589999999995421             158999999999999999999999999999999999999999986

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.37  E-value=7.2e-13  Score=127.00  Aligned_cols=60  Identities=25%  Similarity=0.447  Sum_probs=53.0

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++..            .+.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         1 l~i~~l~~~~~~~~------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i   60 (238)
T cd03249           1 IEFKNVSFRYPSRP------------DVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI   60 (238)
T ss_pred             CeEEEEEEecCCCC------------CccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEE
Confidence            36889999995421            1258999999999999999999999999999999999999999986

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=99.36  E-value=9.4e-13  Score=133.81  Aligned_cols=60  Identities=33%  Similarity=0.612  Sum_probs=55.2

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ...++++|++|.|++.               .+++++||++.+||+++|+|+||+||||+++||+|+.+|++|++
T Consensus        12 ~~~L~l~~l~~~~~~~---------------~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I   71 (375)
T PRK09452         12 SPLVELRGISKSFDGK---------------EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI   71 (375)
T ss_pred             CceEEEEEEEEEECCe---------------EEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence            4469999999999532               58999999999999999999999999999999999999999986

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.36  E-value=8.1e-13  Score=128.09  Aligned_cols=60  Identities=20%  Similarity=0.393  Sum_probs=54.4

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+.+.+++++|.|++.               .+++|+||.+.+||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         8 ~~~i~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v   67 (257)
T PRK14246          8 EDVFNISRLYLYINDK---------------AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKI   67 (257)
T ss_pred             hhheeeeeEEEecCCc---------------eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCce
Confidence            3569999999999532               58999999999999999999999999999999999999999754

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.36  E-value=1.3e-12  Score=130.90  Aligned_cols=74  Identities=19%  Similarity=0.311  Sum_probs=58.4

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +..++++||+|.|+...... . +.+..+.+.||+|+||++++||++||+|+||+||||++++|+|+++|++|+++
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~-~-~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~   79 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQ-W-FWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVA   79 (331)
T ss_pred             CceEEEeCeEEEECCCCccc-c-ccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEE
Confidence            46799999999996421100 0 00011235799999999999999999999999999999999999999999863

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.36  E-value=3.9e-13  Score=127.65  Aligned_cols=57  Identities=30%  Similarity=0.429  Sum_probs=51.9

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +.++++++.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus        23 l~~~~~~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i   79 (224)
T cd03220          23 LGILGRKGEVGEF---------------WALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTV   79 (224)
T ss_pred             hhhhhhhhhcCCe---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            6677888888532               69999999999999999999999999999999999999999986

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.36  E-value=9e-13  Score=127.54  Aligned_cols=58  Identities=28%  Similarity=0.557  Sum_probs=52.8

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----Cccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT-----sG~a  478 (479)
                      .+++++|+|.|++.               .+++|+||++.+||+++|+|+|||||||++++|+|+++|+     +|++
T Consensus         4 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i   66 (253)
T PRK14267          4 AIETVNLRVYYGSN---------------HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEV   66 (253)
T ss_pred             eEEEEeEEEEeCCe---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE
Confidence            58999999999532               5899999999999999999999999999999999999874     8976

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.36  E-value=9.5e-13  Score=128.40  Aligned_cols=60  Identities=20%  Similarity=0.447  Sum_probs=54.2

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      ...++++|++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|     ++|++
T Consensus        17 ~~~l~~~nl~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I   81 (267)
T PRK14235         17 EIKMRARDVSVFYGEK---------------QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKI   81 (267)
T ss_pred             CceEEEEeEEEEECCE---------------EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE
Confidence            4579999999999531               589999999999999999999999999999999999874     89976

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.36  E-value=3.8e-13  Score=120.07  Aligned_cols=60  Identities=33%  Similarity=0.549  Sum_probs=55.9

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..+.+++++..|++.               .|+|++||.|.+||.-+|+|||||||||.+..|||-.+|+.|++|
T Consensus         4 ~iL~~~~vsVsF~GF---------------~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~   63 (249)
T COG4674           4 IILYLDGVSVSFGGF---------------KALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVL   63 (249)
T ss_pred             ceEEEeceEEEEcce---------------eeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEE
Confidence            568999999999653               699999999999999999999999999999999999999999875

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.35  E-value=1.4e-12  Score=127.98  Aligned_cols=62  Identities=23%  Similarity=0.404  Sum_probs=55.1

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .++++|++|.|++..            .+.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+++
T Consensus         4 ~l~~~~l~~~~~~~~------------~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~   65 (277)
T PRK13642          4 ILEVENLVFKYEKES------------DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVK   65 (277)
T ss_pred             eEEEEEEEEEcCCCC------------cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEE
Confidence            589999999996321            12589999999999999999999999999999999999999999863

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.35  E-value=1.4e-12  Score=128.25  Aligned_cols=61  Identities=21%  Similarity=0.369  Sum_probs=54.2

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC---ccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs---G~a  478 (479)
                      ..+++++++|.|++..             ..+++++||++++||++||+|+|||||||++++|+|+++|++   |++
T Consensus         4 ~~l~i~~l~~~~~~~~-------------~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i   67 (282)
T PRK13640          4 NIVEFKHVSFTYPDSK-------------KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKI   67 (282)
T ss_pred             ceEEEEEEEEEcCCCC-------------ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEE
Confidence            4689999999995421             148999999999999999999999999999999999999998   765

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.35  E-value=5.5e-13  Score=130.17  Aligned_cols=56  Identities=20%  Similarity=0.463  Sum_probs=50.7

Q ss_pred             EEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       408 ~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++|.|++.               .+++|+||++++|||++|+|+|||||||++++|+|+.+|++|++
T Consensus        26 ~~~~~~~~~~~~---------------~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i   81 (269)
T cd03294          26 SKEEILKKTGQT---------------VGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKV   81 (269)
T ss_pred             hhhhhhhhcCCc---------------eEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence            456888888532               58999999999999999999999999999999999999999976

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.34  E-value=1.3e-12  Score=126.86  Aligned_cols=60  Identities=27%  Similarity=0.452  Sum_probs=53.7

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~--p---TsG~a  478 (479)
                      +..++++|++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+  |   ++|++
T Consensus        10 ~~~l~i~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i   74 (259)
T PRK14274         10 QEVYQINGMNLWYGQH---------------HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEM   74 (259)
T ss_pred             CceEEEeeEEEEECCe---------------eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEE
Confidence            4579999999999532               58999999999999999999999999999999999987  3   68976

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.34  E-value=1.6e-12  Score=127.09  Aligned_cols=60  Identities=27%  Similarity=0.462  Sum_probs=54.3

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a  478 (479)
                      ...+++++++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+++     |++|++
T Consensus        22 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i   86 (271)
T PRK14238         22 KVVFDTQNLNLWYGED---------------HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI   86 (271)
T ss_pred             ceEEEEeeeEEEECCc---------------ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeE
Confidence            4579999999999532               48999999999999999999999999999999999987     699976

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.34  E-value=1.2e-12  Score=127.00  Aligned_cols=58  Identities=24%  Similarity=0.492  Sum_probs=52.5

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      .++++|++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+.+|     ++|++
T Consensus         4 ~l~i~~v~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I   66 (258)
T PRK14241          4 RIDVKDLNIYYGSF---------------HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEV   66 (258)
T ss_pred             cEEEeeEEEEECCE---------------eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEE
Confidence            58899999999532               589999999999999999999999999999999999874     79976

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=99.34  E-value=1.5e-12  Score=132.52  Aligned_cols=61  Identities=36%  Similarity=0.623  Sum_probs=55.5

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ...+++++++|.|++.               .+++|+||++++||+++|+||||+||||++++|+|+.+|++|+++
T Consensus        17 ~~~l~l~~v~~~~~~~---------------~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~   77 (377)
T PRK11607         17 TPLLEIRNLTKSFDGQ---------------HAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM   77 (377)
T ss_pred             CceEEEEeEEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Confidence            3469999999999531               589999999999999999999999999999999999999999863

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.34  E-value=1.5e-12  Score=126.28  Aligned_cols=60  Identities=27%  Similarity=0.517  Sum_probs=53.8

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      .+.+++++++|.|++.               .+++|+||++.+||++||+|+|||||||++++|+|+.+|     ++|++
T Consensus        10 ~~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i   74 (258)
T PRK14268         10 QPQIKVENLNLWYGEK---------------QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKV   74 (258)
T ss_pred             ceeEEEeeeEEEeCCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEE
Confidence            3469999999999531               589999999999999999999999999999999999875     89975

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.34  E-value=1.8e-12  Score=126.49  Aligned_cols=60  Identities=27%  Similarity=0.484  Sum_probs=53.9

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a  478 (479)
                      ...++++|++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+++     |++|++
T Consensus        18 ~~~l~~~nl~~~~~~~---------------~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   82 (267)
T PRK14237         18 EIALSTKDLHVYYGKK---------------EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI   82 (267)
T ss_pred             CeEEEEeeEEEEECCe---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEE
Confidence            4579999999999531               58999999999999999999999999999999999986     589975

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.34  E-value=1.7e-12  Score=126.22  Aligned_cols=60  Identities=28%  Similarity=0.484  Sum_probs=53.8

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a  478 (479)
                      ...++++|++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+     |++|++
T Consensus        11 ~~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i   75 (260)
T PRK10744         11 PSKIQVRNLNFYYGKF---------------HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEI   75 (260)
T ss_pred             CceEEEEEEEEEeCCe---------------EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEE
Confidence            4569999999999532               58999999999999999999999999999999999986     589975

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.33  E-value=1.9e-12  Score=137.70  Aligned_cols=59  Identities=31%  Similarity=0.548  Sum_probs=54.6

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++||+|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus        10 ~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i   68 (510)
T PRK15439         10 PLLCARSISKQYSGV---------------EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL   68 (510)
T ss_pred             ceEEEEeEEEEeCCc---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            469999999999532               58999999999999999999999999999999999999999986

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=99.33  E-value=1.8e-12  Score=129.87  Aligned_cols=62  Identities=16%  Similarity=0.385  Sum_probs=54.1

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC----CCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP----VTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~----pTsG~a  478 (479)
                      .++++||+|.|++..           +.+.||+|+||++++||++||+|+||+||||++++|+|+++    ||+|++
T Consensus         3 ~L~v~~l~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i   68 (326)
T PRK11022          3 LLNVDKLSVHFGDES-----------APFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKL   68 (326)
T ss_pred             eEEEeCeEEEECCCC-----------ccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEE
Confidence            478999999996431           12469999999999999999999999999999999999987    488976

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=99.33  E-value=7.6e-13  Score=117.81  Aligned_cols=58  Identities=31%  Similarity=0.572  Sum_probs=54.2

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      |+.++++|.|++++              .|++|+||.+++||..=|.||.||||||++++|.|...||+|++
T Consensus         2 I~f~~V~k~Y~~g~--------------~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i   59 (223)
T COG2884           2 IRFENVSKAYPGGR--------------EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI   59 (223)
T ss_pred             eeehhhhhhcCCCc--------------hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceE
Confidence            68899999997652              69999999999999999999999999999999999999999986

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.33  E-value=1.9e-12  Score=125.22  Aligned_cols=60  Identities=28%  Similarity=0.519  Sum_probs=54.1

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~--~~pTsG~a  478 (479)
                      +..+++++|+|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+  .+|++|++
T Consensus         5 ~~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i   66 (252)
T CHL00131          5 KPILEIKNLHASVNEN---------------EILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDI   66 (252)
T ss_pred             CceEEEEeEEEEeCCE---------------EeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceE
Confidence            3469999999999531               589999999999999999999999999999999998  58999976

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.33  E-value=2.5e-12  Score=124.75  Aligned_cols=63  Identities=16%  Similarity=0.211  Sum_probs=56.2

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ...++++++++.|++..             ..+++++||++++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus        17 ~~~i~~~~l~~~~~~~~-------------~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~   79 (257)
T cd03288          17 GGEIKIHDLCVRYENNL-------------KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIV   79 (257)
T ss_pred             CceEEEEEEEEEeCCCC-------------CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEE
Confidence            45699999999995421             2589999999999999999999999999999999999999999863

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.33  E-value=1.5e-12  Score=138.44  Aligned_cols=58  Identities=38%  Similarity=0.669  Sum_probs=53.9

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++|++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus         4 ~i~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i   61 (501)
T PRK10762          4 LLQLKGIDKAFPGV---------------KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI   61 (501)
T ss_pred             eEEEeeeEEEeCCe---------------EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            58999999999531               58999999999999999999999999999999999999999986

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.33  E-value=1.8e-12  Score=126.54  Aligned_cols=67  Identities=21%  Similarity=0.385  Sum_probs=54.6

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++|++|.|++....|      ++..+.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         3 ~l~~~nl~~~~~~~~~~~------~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i   69 (268)
T PRK10419          3 LLNVSGLSHHYAHGGLSG------KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNV   69 (268)
T ss_pred             eEEEeceEEEecCCcccc------ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            478999999996310000      0001258999999999999999999999999999999999999999976

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=1.7e-12  Score=125.34  Aligned_cols=58  Identities=24%  Similarity=0.548  Sum_probs=52.4

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      .+++++++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|     ++|++
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i   65 (250)
T PRK14247          3 KIEIRDLKVSFGQV---------------EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEV   65 (250)
T ss_pred             eEEEEeeEEEECCe---------------eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEE
Confidence            48899999999532               589999999999999999999999999999999999874     79976

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=1.9e-12  Score=125.18  Aligned_cols=60  Identities=22%  Similarity=0.496  Sum_probs=53.4

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      +.-++++|++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|     ++|++
T Consensus         2 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i   66 (251)
T PRK14270          2 KIKMESKNLNLWYGEK---------------QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEV   66 (251)
T ss_pred             ccEEEEEEeEEEECCe---------------eeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEE
Confidence            3468999999999532               589999999999999999999999999999999999875     78975

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.33  E-value=1.4e-12  Score=138.16  Aligned_cols=58  Identities=21%  Similarity=0.373  Sum_probs=53.7

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++|++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus         3 ~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i   60 (490)
T PRK10938          3 SLQISQGTFRLSDT---------------KTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER   60 (490)
T ss_pred             eEEEEeEEEEcCCe---------------eecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE
Confidence            48899999999532               48999999999999999999999999999999999999999986

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.33  E-value=2.1e-12  Score=125.08  Aligned_cols=57  Identities=23%  Similarity=0.494  Sum_probs=52.9

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC----CCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV----TGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p----TsG~a  478 (479)
                      .++++|++|.| +.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|    ++|++
T Consensus         4 ~l~~~~l~~~~-~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i   64 (254)
T PRK10418          4 QIELRNIALQA-AQ---------------PLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRV   64 (254)
T ss_pred             EEEEeCeEEEe-cc---------------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEE
Confidence            58999999999 21               489999999999999999999999999999999999999    99976

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=2.1e-12  Score=125.02  Aligned_cols=60  Identities=22%  Similarity=0.444  Sum_probs=53.6

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      +..+++++++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+++|     ++|++
T Consensus         5 ~~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   69 (254)
T PRK14273          5 EAIIETENLNLFYTDF---------------KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNV   69 (254)
T ss_pred             CceEEEeeeEEEeCCc---------------eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEE
Confidence            3479999999999532               489999999999999999999999999999999999987     48875

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.33  E-value=2e-12  Score=125.07  Aligned_cols=59  Identities=22%  Similarity=0.447  Sum_probs=52.6

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~--p---TsG~a  478 (479)
                      ..++++|++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+  |   ++|++
T Consensus         3 ~~l~~~nl~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v   66 (252)
T PRK14256          3 NKVKLEQLNVHFGKN---------------HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKI   66 (252)
T ss_pred             cEEEEEEEEEEeCCe---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEE
Confidence            458999999999532               58999999999999999999999999999999999986  4   68975

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.32  E-value=2e-12  Score=120.53  Aligned_cols=61  Identities=23%  Similarity=0.483  Sum_probs=54.6

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|+.+.           ....|++++||+|++||.++++||.|+||||++++|.|+..||+|.+
T Consensus         2 i~~~~v~k~y~~~~-----------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v   62 (226)
T COG1136           2 IELKNVSKIYGLGG-----------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEV   62 (226)
T ss_pred             cEEeeeEEEeccCC-----------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence            56899999996531           12579999999999999999999999999999999999999999985

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=2.5e-12  Score=126.50  Aligned_cols=60  Identities=22%  Similarity=0.507  Sum_probs=54.3

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a  478 (479)
                      ++.+++++|+|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+     |++|++
T Consensus        37 ~~~l~i~~l~~~~~~~---------------~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I  101 (285)
T PRK14254         37 ETVIEARDLNVFYGDE---------------QALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL  101 (285)
T ss_pred             CceEEEEEEEEEECCE---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEE
Confidence            5579999999999532               58999999999999999999999999999999999987     689976

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=2.3e-12  Score=129.42  Aligned_cols=62  Identities=23%  Similarity=0.376  Sum_probs=54.1

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC----CCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP----VTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~----pTsG~a  478 (479)
                      .++++||+|.|+...           +.+.||+|+||+|++||++||+|+|||||||++++|+|+.+    |++|++
T Consensus         3 ~L~v~~l~~~y~~~~-----------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i   68 (330)
T PRK15093          3 LLDIRNLTIEFKTSD-----------GWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRM   68 (330)
T ss_pred             eEEEeeeEEEEeCCC-----------CCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEE
Confidence            588999999995421           12369999999999999999999999999999999999986    588976

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=2.1e-12  Score=124.79  Aligned_cols=58  Identities=24%  Similarity=0.461  Sum_probs=52.4

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      .+++++++|.|++.               .+++++||++++||+++|+|+|||||||++++|+|+.+|     ++|++
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i   65 (250)
T PRK14262          3 IIEIENFSAYYGEK---------------KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKI   65 (250)
T ss_pred             eEEEEeeEEEeCCc---------------eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE
Confidence            48899999999531               589999999999999999999999999999999999874     88975

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.32  E-value=2.9e-12  Score=118.73  Aligned_cols=62  Identities=26%  Similarity=0.343  Sum_probs=53.3

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~--~pTsG~a  478 (479)
                      .+++++++|.|++..           +...+++++||++++||+++|+|+|||||||++++|+|+.  +|++|++
T Consensus         3 ~l~~~~l~~~~~~~~-----------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i   66 (192)
T cd03232           3 VLTWKNLNYTVPVKG-----------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI   66 (192)
T ss_pred             EEEEeeeEEEecCCC-----------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEE
Confidence            588999999996421           0125899999999999999999999999999999999986  4899976

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.32  E-value=2.5e-12  Score=124.24  Aligned_cols=58  Identities=22%  Similarity=0.521  Sum_probs=52.5

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a  478 (479)
                      .+++++++|.|++.               .+++++||++.+||+.+|+|+|||||||++++|+|+.+     |++|++
T Consensus         4 ~l~~~~l~~~~~~~---------------~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v   66 (251)
T PRK14251          4 IISAKDVHLSYGNY---------------EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI   66 (251)
T ss_pred             eEEEEeeEEEECCe---------------eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEE
Confidence            58999999999531               58999999999999999999999999999999999986     479976

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.31  E-value=2.6e-12  Score=124.98  Aligned_cols=59  Identities=29%  Similarity=0.512  Sum_probs=52.8

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC---ccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG---GDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs---G~a  478 (479)
                      +.++++||+|.|++.               .+++++||++.+||+++|+|+|||||||++++|+|+++|++   |++
T Consensus         3 ~~l~~~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i   64 (262)
T PRK09984          3 TIIRVEKLAKTFNQH---------------QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI   64 (262)
T ss_pred             cEEEEeeEEEEeCCe---------------EEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEE
Confidence            368999999999532               58999999999999999999999999999999999999864   764

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.31  E-value=2.4e-12  Score=137.14  Aligned_cols=59  Identities=34%  Similarity=0.540  Sum_probs=54.4

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus         4 ~~l~~~~l~~~~~~~---------------~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i   62 (510)
T PRK09700          4 PYISMAGIGKSFGPV---------------HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI   62 (510)
T ss_pred             ceEEEeeeEEEcCCe---------------EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE
Confidence            358999999999532               58999999999999999999999999999999999999999986

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.31  E-value=2.6e-12  Score=124.14  Aligned_cols=58  Identities=24%  Similarity=0.483  Sum_probs=51.7

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      .++++|++|.|++.               .+++|+||++++||+.+|+|+|||||||++++|+|+.+|     ++|++
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i   65 (250)
T PRK14240          3 KISVKDLDLFYGDF---------------QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEV   65 (250)
T ss_pred             eEEEEEEEEEECCc---------------eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence            48899999999532               589999999999999999999999999999999998763     68976

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.31  E-value=3.6e-12  Score=124.65  Aligned_cols=60  Identities=23%  Similarity=0.505  Sum_probs=53.8

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a  478 (479)
                      ...++++|++|.|++.               .+++|+||++++||++|++|+|||||||++++|+|+.+     |++|++
T Consensus        23 ~~~l~~~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i   87 (272)
T PRK14236         23 QTALEVRNLNLFYGDK---------------QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEI   87 (272)
T ss_pred             CcEEEEEEEEEEECCe---------------eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEE
Confidence            4569999999999532               58999999999999999999999999999999999987     489975

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.31  E-value=2.7e-12  Score=124.97  Aligned_cols=60  Identities=25%  Similarity=0.581  Sum_probs=53.2

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a  478 (479)
                      ...+++++++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+     |++|++
T Consensus         8 ~~~l~i~~v~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   72 (264)
T PRK14243          8 ETVLRTENLNVYYGSF---------------LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV   72 (264)
T ss_pred             ceEEEEeeeEEEECCE---------------EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEE
Confidence            3469999999999532               58999999999999999999999999999999999976     488975

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.31  E-value=2.7e-12  Score=123.66  Aligned_cols=58  Identities=19%  Similarity=0.367  Sum_probs=52.2

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~---pTsG~a  478 (479)
                      .+++++++|.|++.               .+++|+||++.+||+++|+|+|||||||++++|+|+.+   |++|++
T Consensus         2 ~~~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i   62 (246)
T PRK14269          2 IAKTTNLNLFYGKK---------------QALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLV   62 (246)
T ss_pred             ceeeeeeEEEECCE---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEE
Confidence            37899999999531               58999999999999999999999999999999999974   799976

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.31  E-value=2.5e-12  Score=124.36  Aligned_cols=58  Identities=21%  Similarity=0.414  Sum_probs=52.3

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----Cccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT-----sG~a  478 (479)
                      .++++|++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+++|+     +|++
T Consensus         4 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i   66 (252)
T PRK14272          4 LLSAQDVNIYYGDK---------------QAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI   66 (252)
T ss_pred             EEEEeeeEEEECCE---------------EeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeE
Confidence            58899999999531               5899999999999999999999999999999999999875     7875

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.30  E-value=2.7e-12  Score=137.99  Aligned_cols=61  Identities=21%  Similarity=0.359  Sum_probs=55.4

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++.++++||+|.|+++              +.+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         4 ~~~l~i~~l~~~y~~~--------------~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i   64 (556)
T PRK11819          4 QYIYTMNRVSKVVPPK--------------KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA   64 (556)
T ss_pred             cEEEEEeeEEEEeCCC--------------CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            3579999999999521              158999999999999999999999999999999999999999986

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.30  E-value=3e-12  Score=139.47  Aligned_cols=60  Identities=25%  Similarity=0.369  Sum_probs=55.6

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..++++||+|.|++.               .+++|+||+|++||++||+|+|||||||++++|+|+.+|++|++
T Consensus       310 ~~~l~~~~l~~~y~~~---------------~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i  369 (638)
T PRK10636        310 NPLLKMEKVSAGYGDR---------------IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI  369 (638)
T ss_pred             CceEEEEeeEEEeCCe---------------eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence            5679999999999532               58999999999999999999999999999999999999999986

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.30  E-value=3.5e-12  Score=124.26  Aligned_cols=60  Identities=23%  Similarity=0.465  Sum_probs=53.5

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      ...+++++++|.|++.               .+++|+||++++||+.+|+|+|||||||++++|+|+.+|     ++|++
T Consensus        14 ~~~l~~~~l~~~~~~~---------------~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i   78 (265)
T PRK14252         14 QQKSEVNKLNFYYGGY---------------QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI   78 (265)
T ss_pred             CceEEEEEEEEEECCe---------------eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEE
Confidence            3569999999999532               589999999999999999999999999999999999875     78875

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.30  E-value=3.6e-12  Score=127.73  Aligned_cols=64  Identities=22%  Similarity=0.438  Sum_probs=55.9

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---Cccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT---sG~a  478 (479)
                      +..++++||+|.|+..           ...+.||+|+||+|++||++||+|+||+||||++++|+|+++|+   +|++
T Consensus        10 ~~~L~i~~l~~~~~~~-----------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I   76 (330)
T PRK09473         10 DALLDVKDLRVTFSTP-----------DGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSA   76 (330)
T ss_pred             CceEEEeCeEEEEecC-----------CCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEE
Confidence            3579999999999532           11246999999999999999999999999999999999999995   8976

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.30  E-value=3.4e-12  Score=125.07  Aligned_cols=60  Identities=25%  Similarity=0.397  Sum_probs=53.7

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      ...+++++++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|     ++|++
T Consensus        19 ~~~l~i~nl~~~~~~~---------------~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i   83 (276)
T PRK14271         19 APAMAAVNLTLGFAGK---------------TVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDV   83 (276)
T ss_pred             CcEEEEeeEEEEECCE---------------EEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEE
Confidence            3468999999999532               589999999999999999999999999999999999986     58865

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.30  E-value=2.9e-12  Score=123.70  Aligned_cols=58  Identities=28%  Similarity=0.495  Sum_probs=52.1

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      .+++++++|.|++.               .+++|+||++++||+.+|+|+|||||||++++|+|+.+|     ++|++
T Consensus         3 ~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v   65 (249)
T PRK14253          3 KFNIENLDLFYGEN---------------QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL   65 (249)
T ss_pred             eEEEeccEEEECCe---------------eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEE
Confidence            47899999999532               589999999999999999999999999999999999986     48865

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.30  E-value=4.1e-12  Score=131.55  Aligned_cols=72  Identities=19%  Similarity=0.390  Sum_probs=60.9

Q ss_pred             CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+.++++||+|.|..+..++    .++++.++||+|+||++++||++||+|..|+||||+.++|+|+.+|++|++
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~----~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i  348 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLF----VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSI  348 (539)
T ss_pred             cCceeEeeeeeeeeccccccc----cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            357899999999997543110    122456789999999999999999999999999999999999999999976

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.30  E-value=3.6e-12  Score=125.54  Aligned_cols=61  Identities=20%  Similarity=0.313  Sum_probs=53.8

Q ss_pred             CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCcc
Q 011717          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGD  477 (479)
Q Consensus       403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~  477 (479)
                      .++.+++++++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+     |++|+
T Consensus        36 ~~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~  100 (286)
T PRK14275         36 GKPHVVAKNFSIYYGEF---------------EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGA  100 (286)
T ss_pred             CceEEEEeeeEEEECCE---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceE
Confidence            35679999999999531               48999999999999999999999999999999999854     49997


Q ss_pred             c
Q 011717          478 G  478 (479)
Q Consensus       478 a  478 (479)
                      +
T Consensus       101 I  101 (286)
T PRK14275        101 L  101 (286)
T ss_pred             E
Confidence            5

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.30  E-value=3.6e-12  Score=135.41  Aligned_cols=60  Identities=32%  Similarity=0.500  Sum_probs=54.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +.++++|++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+++
T Consensus         3 ~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~   62 (501)
T PRK11288          3 PYLSFDGIGKTFPGV---------------KALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL   62 (501)
T ss_pred             ceEEEeeeEEEECCE---------------EEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence            358999999999531               589999999999999999999999999999999999999999863

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.30  E-value=3.1e-12  Score=136.06  Aligned_cols=59  Identities=29%  Similarity=0.563  Sum_probs=53.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC--CCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV--TGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p--TsG~a  478 (479)
                      ..++++|++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+++|  ++|++
T Consensus         4 ~~l~~~nl~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i   64 (506)
T PRK13549          4 YLLEMKNITKTFGGV---------------KALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEI   64 (506)
T ss_pred             ceEEEeeeEEEeCCe---------------EeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE
Confidence            358999999999531               589999999999999999999999999999999999996  89986

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=5.1e-12  Score=125.57  Aligned_cols=61  Identities=26%  Similarity=0.538  Sum_probs=54.7

Q ss_pred             CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCcc
Q 011717          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGD  477 (479)
Q Consensus       403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~  477 (479)
                      .+..+++++|++.|++.               .+++++||++++||++||+|+|||||||++++|+|+.+     |++|+
T Consensus        42 ~~~~l~i~nl~~~~~~~---------------~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~  106 (305)
T PRK14264         42 GDAKLSVEDLDVYYGDD---------------HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS  106 (305)
T ss_pred             CCceEEEEEEEEEeCCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence            35579999999999532               58999999999999999999999999999999999986     68997


Q ss_pred             c
Q 011717          478 G  478 (479)
Q Consensus       478 a  478 (479)
                      +
T Consensus       107 I  107 (305)
T PRK14264        107 V  107 (305)
T ss_pred             E
Confidence            6

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.29  E-value=3.4e-12  Score=121.37  Aligned_cols=62  Identities=18%  Similarity=0.284  Sum_probs=53.9

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC---CCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP---VTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~---pTsG~a  478 (479)
                      .+.+.++++.|++..           ..+.+++|+||++++||+++|+|+|||||||++++|+|+++   |++|++
T Consensus         3 ~~~~~~~~~~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i   67 (226)
T cd03234           3 VLPWWDVGLKAKNWN-----------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQI   67 (226)
T ss_pred             cceeecceeeeecCc-----------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEE
Confidence            466889999996531           02369999999999999999999999999999999999999   999976

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.29  E-value=4.6e-12  Score=122.48  Aligned_cols=60  Identities=20%  Similarity=0.391  Sum_probs=52.8

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~--p---TsG~a  478 (479)
                      +..+++++++|.|++.               .+++|+||++.+||++||+|+|||||||++++|+|+.+  |   ++|++
T Consensus         3 ~~~l~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   67 (252)
T PRK14255          3 KKIITSSDVHLFYGKF---------------EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNV   67 (252)
T ss_pred             cceEEEEeEEEEECCe---------------eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEE
Confidence            4468999999999531               58999999999999999999999999999999999865  4   58875

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.29  E-value=5.9e-12  Score=136.94  Aligned_cols=64  Identities=19%  Similarity=0.335  Sum_probs=56.3

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..++++||+|.|++..           +...|++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus        10 ~~~l~v~~l~~~y~~~~-----------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i   73 (623)
T PRK10261         10 RDVLAVENLNIAFMQEQ-----------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV   73 (623)
T ss_pred             CceEEEeceEEEecCCC-----------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEE
Confidence            45799999999995421           12369999999999999999999999999999999999999999975

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.28  E-value=4.7e-12  Score=117.54  Aligned_cols=61  Identities=30%  Similarity=0.494  Sum_probs=56.1

Q ss_pred             CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+..+.++|++-.|+++               ..++++|+.|++||--+++|+|||||||+++++||+++||+|.+
T Consensus        28 ~~~li~l~~v~v~r~gk---------------~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~   88 (257)
T COG1119          28 NEPLIELKNVSVRRNGK---------------KILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV   88 (257)
T ss_pred             CcceEEecceEEEECCE---------------eeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCce
Confidence            35679999999999653               58999999999999999999999999999999999999999976

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=5.2e-12  Score=122.24  Aligned_cols=59  Identities=25%  Similarity=0.522  Sum_probs=52.2

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC--C---CCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP--V---TGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~--p---TsG~a  478 (479)
                      ..+++++++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+  |   ++|++
T Consensus         5 ~~i~~~~l~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   68 (253)
T PRK14261          5 IILSTKNLNLWYGEK---------------HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI   68 (253)
T ss_pred             ceEEEeeeEEEECCe---------------eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEE
Confidence            468999999999532               58999999999999999999999999999999999875  3   48875

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=5.1e-12  Score=122.11  Aligned_cols=58  Identities=22%  Similarity=0.503  Sum_probs=52.5

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-----Cccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-----GGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT-----sG~a  478 (479)
                      .+++++++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+.+|+     +|++
T Consensus         4 ~l~~~~l~~~~~~~---------------~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v   66 (251)
T PRK14249          4 KIKIRGVNFFYHKH---------------QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAV   66 (251)
T ss_pred             eEEEEEEEEEECCe---------------eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEE
Confidence            58899999999531               4899999999999999999999999999999999999997     5865

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=6e-12  Score=123.17  Aligned_cols=60  Identities=20%  Similarity=0.512  Sum_probs=53.1

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      ...+++++++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|     ++|++
T Consensus        18 ~~~l~~~nl~~~~~~~---------------~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i   82 (274)
T PRK14265         18 HSVFEVEGVKVFYGGF---------------LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL   82 (274)
T ss_pred             CceEEEeeEEEEeCCe---------------EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE
Confidence            4579999999999532               589999999999999999999999999999999999763     68865

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.28  E-value=4.4e-12  Score=123.16  Aligned_cols=59  Identities=27%  Similarity=0.525  Sum_probs=52.8

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      ..+++++++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.+|     ++|++
T Consensus         6 ~~l~~~~l~~~~~~~---------------~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i   69 (259)
T PRK14260          6 PAIKVKDLSFYYNTS---------------KAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVV   69 (259)
T ss_pred             ceEEEEEEEEEECCe---------------EeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEE
Confidence            368999999999532               589999999999999999999999999999999999885     48875

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.28  E-value=5.9e-12  Score=121.71  Aligned_cols=59  Identities=19%  Similarity=0.388  Sum_probs=52.0

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CC---CCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PV---TGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~--~p---TsG~a  478 (479)
                      ..+++++++|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+.  +|   ++|++
T Consensus         4 ~~l~~~~l~~~~~~~---------------~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i   67 (252)
T PRK14239          4 PILQVSDLSVYYNKK---------------KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI   67 (252)
T ss_pred             ceEEEEeeEEEECCe---------------eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceE
Confidence            358999999999532               5899999999999999999999999999999999984  46   58975

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.27  E-value=6.4e-12  Score=122.08  Aligned_cols=60  Identities=20%  Similarity=0.382  Sum_probs=53.6

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      ..++.++++++.|++               ..+++++||++++||++||+|+|||||||++++|+|+++|     ++|++
T Consensus         6 ~~~~~~~~~~~~~~~---------------~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i   70 (261)
T PRK14263          6 PIVMDCKLDKIFYGN---------------FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHV   70 (261)
T ss_pred             CceEEEEeEEEEeCC---------------EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEE
Confidence            467899999999943               1599999999999999999999999999999999999987     68875

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.27  E-value=5.9e-12  Score=121.61  Aligned_cols=59  Identities=25%  Similarity=0.509  Sum_probs=51.6

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC---CCC--CCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI---TPV--TGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~---~~p--TsG~a  478 (479)
                      +.+++++++|.|++.               .+++|+||++++||+.||+|+|||||||++++|+|+   .+|  ++|++
T Consensus         2 ~~l~~~~~~~~~~~~---------------~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i   65 (250)
T PRK14245          2 VKIDARDVNFWYGDF---------------HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEI   65 (250)
T ss_pred             cEEEEEEEEEEECCE---------------eEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEE
Confidence            358899999999531               589999999999999999999999999999999997   455  58975

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.27  E-value=5.5e-12  Score=137.54  Aligned_cols=60  Identities=22%  Similarity=0.442  Sum_probs=55.5

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..++++||+|.|++.               .+++|+||.|++||++||+|+|||||||++++|+|+.+|++|++
T Consensus       317 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i  376 (635)
T PRK11147        317 KIVFEMENVNYQIDGK---------------QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI  376 (635)
T ss_pred             CceEEEeeeEEEECCe---------------EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence            5579999999999532               58999999999999999999999999999999999999999986

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.27  E-value=5.2e-12  Score=135.79  Aligned_cols=60  Identities=27%  Similarity=0.444  Sum_probs=55.4

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..+++++|+|.|++.               .+++|+||++.+|||+||+|+|||||||++++|+|+.+|++|++
T Consensus       322 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i  381 (556)
T PRK11819        322 DKVIEAENLSKSFGDR---------------LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI  381 (556)
T ss_pred             CeEEEEEeEEEEECCe---------------eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            4579999999999532               58999999999999999999999999999999999999999986

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.27  E-value=7.8e-12  Score=122.54  Aligned_cols=59  Identities=20%  Similarity=0.364  Sum_probs=53.3

Q ss_pred             CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ....++++++++.  +.               .+++++||.+++||++||+|+|||||||++++|+|+++|++|++
T Consensus        36 ~~~~l~i~nls~~--~~---------------~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I   94 (282)
T cd03291          36 DDNNLFFSNLCLV--GA---------------PVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI   94 (282)
T ss_pred             CCCeEEEEEEEEe--cc---------------cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            3567999999984  11               48999999999999999999999999999999999999999986

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.27  E-value=5e-12  Score=135.81  Aligned_cols=60  Identities=22%  Similarity=0.363  Sum_probs=54.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++||+|.|++.              +.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         3 ~~i~~~nls~~~~~~--------------~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i   62 (552)
T TIGR03719         3 YIYTMNRVSKVVPPK--------------KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEA   62 (552)
T ss_pred             EEEEEeeEEEecCCC--------------CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            468999999999522              158999999999999999999999999999999999999999986

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.27  E-value=2.4e-12  Score=116.84  Aligned_cols=62  Identities=29%  Similarity=0.445  Sum_probs=53.9

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +.+.++.|+|.+...          ..+.|++++||+|++||...++|+|||||||+++.|+|.+.||+|++
T Consensus         2 i~~~~~~~~f~~g~~----------~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I   63 (263)
T COG1101           2 ISLSNATKTFFKGTP----------LEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQI   63 (263)
T ss_pred             cccccceeeecCCCh----------hHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceE
Confidence            346788888865432          34579999999999999999999999999999999999999999986

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.27  E-value=5.9e-12  Score=112.69  Aligned_cols=56  Identities=27%  Similarity=0.539  Sum_probs=50.2

Q ss_pred             EecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          409 IRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       409 i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +++++|.|++.               .+++++++++++||+++|+|+|||||||++++|+|+++|++|+++
T Consensus         2 ~~~~~~~~~~~---------------~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~   57 (157)
T cd00267           2 IENLSFRYGGR---------------TALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL   57 (157)
T ss_pred             eEEEEEEeCCe---------------eeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEE
Confidence            56788888532               589999999999999999999999999999999999999999763

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.27  E-value=5.4e-12  Score=135.60  Aligned_cols=61  Identities=26%  Similarity=0.402  Sum_probs=55.7

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +..+++++++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus       320 ~~~l~~~~l~~~~~~~---------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~  380 (552)
T TIGR03719       320 DKVIEAENLSKGFGDK---------------LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIK  380 (552)
T ss_pred             CeEEEEeeEEEEECCe---------------eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEE
Confidence            4579999999999532               589999999999999999999999999999999999999999863

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.27  E-value=4.9e-12  Score=137.90  Aligned_cols=58  Identities=28%  Similarity=0.471  Sum_probs=53.9

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++|+|.|++.               .+++|+||.+++||++||+|+|||||||+++||+|+.+|++|++
T Consensus         3 ~l~i~~ls~~~~~~---------------~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I   60 (635)
T PRK11147          3 LISIHGAWLSFSDA---------------PLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRI   60 (635)
T ss_pred             EEEEeeEEEEeCCc---------------eeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE
Confidence            48899999999532               58999999999999999999999999999999999999999986

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.26  E-value=6.5e-12  Score=133.19  Aligned_cols=60  Identities=25%  Similarity=0.397  Sum_probs=53.8

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-TsG~a  478 (479)
                      +..++++|++|.|++.               .+++|+||.+++||++||+|+|||||||++++|+|+.+| ++|++
T Consensus       258 ~~~l~~~~l~~~~~~~---------------~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i  318 (490)
T PRK10938        258 EPRIVLNNGVVSYNDR---------------PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDL  318 (490)
T ss_pred             CceEEEeceEEEECCe---------------eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeE
Confidence            4579999999999532               489999999999999999999999999999999998876 68875

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.26  E-value=5.9e-12  Score=134.73  Aligned_cols=60  Identities=27%  Similarity=0.398  Sum_probs=55.2

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..++++||+|.|++.               .+++++||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus       317 ~~~l~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i  376 (530)
T PRK15064        317 RNALEVENLTKGFDNG---------------PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV  376 (530)
T ss_pred             CceEEEEeeEEeeCCc---------------eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            3579999999999532               48999999999999999999999999999999999999999986

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.26  E-value=8.3e-12  Score=133.30  Aligned_cols=66  Identities=21%  Similarity=0.430  Sum_probs=56.2

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ...++++||+|.|++..          .+.+.+++|+||++++||+++|+|+|||||||++++|+|+.+|++|+++
T Consensus       277 ~~~l~~~~l~~~~~~~~----------~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~  342 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVD----------RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVN  342 (520)
T ss_pred             CceEEEeccEEEeccCC----------CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            34699999999995310          0112599999999999999999999999999999999999999999863

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.26  E-value=1.1e-11  Score=117.41  Aligned_cols=59  Identities=32%  Similarity=0.568  Sum_probs=54.3

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+.+++++..|++.              ..|++++|+++++||+.+++||||+||||++++|+|+++|++|++
T Consensus         3 ~i~~~~l~~~y~~~--------------~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v   61 (235)
T COG1122           3 MIEAENLSFRYPGR--------------KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV   61 (235)
T ss_pred             eEEEEEEEEEcCCC--------------ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE
Confidence            57889999999653              269999999999999999999999999999999999999999986

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.26  E-value=9.4e-12  Score=129.36  Aligned_cols=62  Identities=18%  Similarity=0.264  Sum_probs=53.3

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++||++.|++.            ....+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus        20 ~mL~lknL~~~~~~~------------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI   81 (549)
T PRK13545         20 PFDKLKDLFFRSKDG------------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTV   81 (549)
T ss_pred             ceeEEEEEEEecCCC------------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEE
Confidence            357777887777432            12359999999999999999999999999999999999999999986

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.25  E-value=8.3e-12  Score=121.34  Aligned_cols=55  Identities=22%  Similarity=0.536  Sum_probs=50.5

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      ..++++|++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+.+|+
T Consensus         6 ~~l~~~nl~~~~~~~---------------~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~   60 (261)
T PRK14258          6 PAIKVNNLSFYYDTQ---------------KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE   60 (261)
T ss_pred             ceEEEeeEEEEeCCe---------------eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCC
Confidence            368999999999532               5899999999999999999999999999999999999986

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.24  E-value=8.3e-12  Score=120.65  Aligned_cols=58  Identities=19%  Similarity=0.428  Sum_probs=51.1

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a  478 (479)
                      .-++++++|.|++.               .+++|+||++.+||+++|+|+|||||||++++|+|+.+     |++|++
T Consensus         5 ~~~~~~l~~~~~~~---------------~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i   67 (251)
T PRK14244          5 HASVKNLNLWYGSK---------------QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGEL   67 (251)
T ss_pred             EEEeeeEEEEECCe---------------eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEE
Confidence            35688999999531               58999999999999999999999999999999999986     478975

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.24  E-value=1.1e-11  Score=134.76  Aligned_cols=72  Identities=26%  Similarity=0.402  Sum_probs=57.3

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +..++++||+|.|+.....  .  .++.+.+.|++|+||+|++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus       311 ~~~L~~~~l~~~y~~~~~~--~--~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~  382 (623)
T PRK10261        311 EPILQVRNLVTRFPLRSGL--L--NRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEII  382 (623)
T ss_pred             CceEEEeeeEEEEcCCCcc--c--cccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEE
Confidence            3579999999999531100  0  0001123699999999999999999999999999999999999999999873

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.23  E-value=1.2e-11  Score=119.39  Aligned_cols=58  Identities=28%  Similarity=0.507  Sum_probs=51.5

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a  478 (479)
                      .+++++++|.|++.               .+++|+||++.+||+++|+|+|||||||++++|+|+.+     |++|++
T Consensus         3 ~l~~~~v~~~~~~~---------------~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v   65 (250)
T PRK14266          3 RIEVENLNTYFDDA---------------HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHI   65 (250)
T ss_pred             EEEEEeEEEEeCCe---------------EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEE
Confidence            47899999999531               58999999999999999999999999999999999864     488975

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.23  E-value=8.5e-12  Score=132.90  Aligned_cols=58  Identities=17%  Similarity=0.452  Sum_probs=52.9

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..++++|++|.|+                 .+++|+||++++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus       264 ~~l~~~~l~~~~~-----------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~  321 (510)
T PRK09700        264 TVFEVRNVTSRDR-----------------KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIR  321 (510)
T ss_pred             cEEEEeCccccCC-----------------CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEE
Confidence            4699999998662                 279999999999999999999999999999999999999999863

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.21  E-value=1.3e-11  Score=131.31  Aligned_cols=62  Identities=19%  Similarity=0.244  Sum_probs=53.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-TsG~a  478 (479)
                      ..++++|++|.|++..            ...+++|+||++++||++||+|+|||||||++++|+|+.+| ++|++
T Consensus       256 ~~l~~~~l~~~~~~~~------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i  318 (500)
T TIGR02633       256 VILEARNLTCWDVINP------------HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNV  318 (500)
T ss_pred             ceEEEeCCcccccccc------------cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEE
Confidence            4699999999984210            11489999999999999999999999999999999999985 89986

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.21  E-value=1.9e-11  Score=119.42  Aligned_cols=59  Identities=24%  Similarity=0.373  Sum_probs=52.4

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ++++|++|.|++..             ..+++|+||.+++||++||+|+|||||||++++|+|+.+ ++|+++
T Consensus         3 i~~~nls~~~~~~~-------------~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~   61 (275)
T cd03289           3 MTVKDLTAKYTEGG-------------NAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQ   61 (275)
T ss_pred             EEEEEEEEEeCCCC-------------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEE
Confidence            78999999995321             148999999999999999999999999999999999997 789763

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.21  E-value=1.3e-11  Score=131.30  Aligned_cols=63  Identities=22%  Similarity=0.391  Sum_probs=54.3

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-CCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-pTsG~a~  479 (479)
                      ..+++++|+|.|+...            .+.+++|+||++++||++||+|+|||||||++++|+|+.+ |++|+++
T Consensus       258 ~~l~~~~l~~~~~~~~------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~  321 (506)
T PRK13549        258 VILEVRNLTAWDPVNP------------HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIF  321 (506)
T ss_pred             ceEEEecCcccccccc------------ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEE
Confidence            4699999999994210            1258999999999999999999999999999999999998 5999863

>PLN03073 ABC transporter F family; Provisional

Probab=99.20  E-value=2.2e-11  Score=133.56  Aligned_cols=61  Identities=25%  Similarity=0.386  Sum_probs=55.4

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..+++++++|.|++.              ..+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus       506 ~~~L~~~~ls~~y~~~--------------~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I  566 (718)
T PLN03073        506 PPIISFSDASFGYPGG--------------PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV  566 (718)
T ss_pred             CceEEEEeeEEEeCCC--------------CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceE
Confidence            3579999999999532              148999999999999999999999999999999999999999986

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.20  E-value=2.4e-11  Score=129.98  Aligned_cols=63  Identities=21%  Similarity=0.364  Sum_probs=54.3

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      ..+++++++|.|++..           ..+.+++|+||++++||++||+|+|||||||++++|+|+++|     ++|++
T Consensus         4 ~~l~~~~l~~~~~~~~-----------~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i   71 (529)
T PRK15134          4 PLLAIENLSVAFRQQQ-----------TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDI   71 (529)
T ss_pred             ceEEEeceEEEecCCC-----------CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEE
Confidence            3589999999995311           012699999999999999999999999999999999999986     79975

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.17  E-value=2.7e-11  Score=127.41  Aligned_cols=58  Identities=21%  Similarity=0.370  Sum_probs=54.0

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++.+++|.|+++               +-++++||.+++|++.||+|+|||||||++++|+|...|++|++
T Consensus         3 ~i~~~~ls~~~g~~---------------~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i   60 (530)
T COG0488           3 MITLENLSLAYGDR---------------PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV   60 (530)
T ss_pred             eEEEeeeEEeeCCc---------------eeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE
Confidence            48899999999543               57999999999999999999999999999999999999999986

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.15  E-value=3.5e-11  Score=127.59  Aligned_cols=59  Identities=22%  Similarity=0.366  Sum_probs=53.1

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +..++++||++.++                 .+++++||.+++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus       248 ~~~i~~~~l~~~~~-----------------~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~  306 (491)
T PRK10982        248 EVILEVRNLTSLRQ-----------------PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTIT  306 (491)
T ss_pred             CcEEEEeCcccccC-----------------cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEE
Confidence            34699999988641                 389999999999999999999999999999999999999999863

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.14  E-value=3.6e-11  Score=105.52  Aligned_cols=60  Identities=20%  Similarity=0.438  Sum_probs=55.2

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++.+++++|+|.|++.               +.-+++||++++||+.|++|..|+||||++++|+|-++|++|++
T Consensus         4 ~PLL~V~~lsk~Yg~~---------------~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v   63 (258)
T COG4107           4 KPLLSVSGLSKLYGPG---------------KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTV   63 (258)
T ss_pred             CcceeehhhhhhhCCC---------------cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeE
Confidence            4578999999999654               36899999999999999999999999999999999999999986

>PRK13409 putative ATPase RIL; Provisional

Probab=99.13  E-value=6.5e-11  Score=127.42  Aligned_cols=59  Identities=25%  Similarity=0.362  Sum_probs=53.9

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ...+++++++|.|++                ..++++||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus       338 ~~~l~~~~ls~~~~~----------------~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I  396 (590)
T PRK13409        338 ETLVEYPDLTKKLGD----------------FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV  396 (590)
T ss_pred             ceEEEEcceEEEECC----------------EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            457999999999943                24899999999999999999999999999999999999999986

>PRK13409 putative ATPase RIL; Provisional

Probab=99.12  E-value=4.4e-11  Score=128.68  Aligned_cols=43  Identities=35%  Similarity=0.432  Sum_probs=41.6

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++++ .+++||++||+|+|||||||++++|+|+++|++|++
T Consensus        88 ~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i  130 (590)
T PRK13409         88 FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDY  130 (590)
T ss_pred             eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccc
Confidence            4899999 999999999999999999999999999999999986

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.12  E-value=1.2e-10  Score=116.64  Aligned_cols=62  Identities=21%  Similarity=0.403  Sum_probs=54.2

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-----CCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-----VTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-----pTsG~a  478 (479)
                      +..++++|+++.|.+.             ...+++|+||++++||++|++|+|||||||++++|.|+.+     |++|++
T Consensus        78 ~~~i~~~nls~~y~~~-------------~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I  144 (329)
T PRK14257         78 ANVFEIRNFNFWYMNR-------------TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEI  144 (329)
T ss_pred             CceEEEEeeEEEecCC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEE
Confidence            4579999999999532             1258999999999999999999999999999999999986     578875

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.11  E-value=7.2e-11  Score=126.36  Aligned_cols=71  Identities=20%  Similarity=0.271  Sum_probs=54.6

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +..++++|++|.|++.....    .++.+.+.+++++||++++||++||+|+|||||||++++|+|+.+ ++|+++
T Consensus       273 ~~~l~~~~l~~~~~~~~~~~----~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~  343 (529)
T PRK15134        273 SPLLDVEQLQVAFPIRKGIL----KRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIW  343 (529)
T ss_pred             CCcccccCcEEEeecCcccc----ccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEE
Confidence            34699999999995210000    000012369999999999999999999999999999999999985 899863

>PLN03073 ABC transporter F family; Provisional

Probab=99.10  E-value=1.3e-10  Score=127.57  Aligned_cols=60  Identities=20%  Similarity=0.223  Sum_probs=52.7

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC---CCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT---PVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~---~pTsG~a  478 (479)
                      ..-|+++|++|.|++.               .+++|+||+|.+||++||+|+|||||||++++|+|..   .|++|++
T Consensus       175 ~~~I~i~nls~~y~~~---------------~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I  237 (718)
T PLN03073        175 IKDIHMENFSISVGGR---------------DLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQI  237 (718)
T ss_pred             ceeEEEceEEEEeCCC---------------EEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEE
Confidence            3469999999999532               5899999999999999999999999999999999964   5777765

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.10  E-value=1.2e-10  Score=125.88  Aligned_cols=62  Identities=27%  Similarity=0.402  Sum_probs=55.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..++++|+++.|+++.             ..+++|+||++++||++++.|+|||||||++++|+|+++|++|+++
T Consensus       337 ~~i~~~~v~f~y~~~~-------------~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~  398 (574)
T PRK11160        337 VSLTLNNVSFTYPDQP-------------QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL  398 (574)
T ss_pred             CeEEEEEEEEECCCCC-------------CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence            4699999999996431             1489999999999999999999999999999999999999999863

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.08  E-value=1.1e-10  Score=124.21  Aligned_cols=54  Identities=24%  Similarity=0.391  Sum_probs=49.2

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++++++                    .+++|+||++.+||++||+|+|||||||++++|+|+.+|++|++
T Consensus       256 ~~l~~~~l~~--------------------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I  309 (501)
T PRK10762        256 VRLKVDNLSG--------------------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV  309 (501)
T ss_pred             cEEEEeCccc--------------------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE
Confidence            4688888863                    25999999999999999999999999999999999999999986

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.07  E-value=2.2e-10  Score=125.30  Aligned_cols=60  Identities=23%  Similarity=0.385  Sum_probs=54.5

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|+++.|+++              ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus       450 ~~i~~~nv~~~~~~~--------------~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i  509 (659)
T TIGR00954       450 NGIKFENIPLVTPNG--------------DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRL  509 (659)
T ss_pred             CeEEEEeeEEECCCC--------------CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence            469999999999532              158999999999999999999999999999999999999999975

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.06  E-value=2.2e-10  Score=123.03  Aligned_cols=61  Identities=23%  Similarity=0.487  Sum_probs=55.2

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|+++.|++..             ..+++|+||++++||+++++|+||+||||++++|+|+++|++|++
T Consensus       315 ~~i~~~~v~~~y~~~~-------------~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  375 (544)
T TIGR01842       315 GHLSVENVTIVPPGGK-------------KPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV  375 (544)
T ss_pred             CeEEEEEEEEEcCCCC-------------ccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            4699999999996421             258999999999999999999999999999999999999999976

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.06  E-value=2.1e-10  Score=122.88  Aligned_cols=62  Identities=29%  Similarity=0.529  Sum_probs=55.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..++++|+++.|++..             +.+++|+||++++||++++.|+||+||||++++|+|+++|++|+++
T Consensus       319 ~~i~~~~v~f~y~~~~-------------~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~  380 (529)
T TIGR02857       319 PSLEFSGLSVAYPGRR-------------APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA  380 (529)
T ss_pred             CeEEEEEEEEECCCCC-------------cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence            3699999999996431             1589999999999999999999999999999999999999999863

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.06  E-value=1.5e-10  Score=123.17  Aligned_cols=44  Identities=23%  Similarity=0.328  Sum_probs=42.4

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +++|+||++++||++||+|+|||||||++++|+|+.+|++|+++
T Consensus       268 ~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~  311 (501)
T PRK11288        268 LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVY  311 (501)
T ss_pred             cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEE
Confidence            79999999999999999999999999999999999999999863

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.06  E-value=2.4e-10  Score=126.20  Aligned_cols=62  Identities=18%  Similarity=0.350  Sum_probs=55.8

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..++++|++..|++..             ..+++|+||++++||.++++|+||+||||++++|+|+++|++|+++
T Consensus       450 ~~I~~~nvsf~Y~~~~-------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~  511 (686)
T TIGR03797       450 GAIEVDRVTFRYRPDG-------------PLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVF  511 (686)
T ss_pred             ceEEEEEEEEEcCCCC-------------ccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEE
Confidence            4699999999996431             2589999999999999999999999999999999999999999863

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.06  E-value=2.5e-10  Score=122.25  Aligned_cols=60  Identities=27%  Similarity=0.558  Sum_probs=54.9

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|++..|+++.              .+++|+||++++||++++.|++||||||+++.|.|+++|++|++
T Consensus       333 ~~I~~~~vsf~Y~~~~--------------~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I  392 (529)
T TIGR02868       333 PTLELRDLSFGYPGSP--------------PVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV  392 (529)
T ss_pred             ceEEEEEEEEecCCCC--------------ceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            4599999999996421              48999999999999999999999999999999999999999986

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.05  E-value=2.3e-10  Score=126.87  Aligned_cols=61  Identities=20%  Similarity=0.293  Sum_probs=55.6

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|++..|++..             ..+++|+||++++||.++++|+||+||||++++|+|+++|++|++
T Consensus       476 ~~I~~~~vsf~y~~~~-------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I  536 (710)
T TIGR03796       476 GYVELRNITFGYSPLE-------------PPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEI  536 (710)
T ss_pred             CeEEEEEEEEecCCCC-------------CCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            4699999999996431             258999999999999999999999999999999999999999986

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.05  E-value=2.6e-10  Score=123.48  Aligned_cols=60  Identities=28%  Similarity=0.377  Sum_probs=54.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|+++.|++..              .+++|+||++++||+++++|+|||||||++++|+|+++|++|++
T Consensus       333 ~~i~~~~v~~~y~~~~--------------~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  392 (585)
T TIGR01192       333 GAVEFRHITFEFANSS--------------QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI  392 (585)
T ss_pred             CeEEEEEEEEECCCCC--------------ccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE
Confidence            3599999999996421              47999999999999999999999999999999999999999986

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.05  E-value=1.9e-10  Score=100.78  Aligned_cols=66  Identities=18%  Similarity=0.299  Sum_probs=56.3

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+.++|++|+|.-...        ..-....++|+||+|+.|||.+|=||.||||||+++||-|.+.|++|++
T Consensus         3 ~~l~v~~~~KtFtlH~q--------~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I   68 (235)
T COG4778           3 TPLNVSNVSKTFTLHQQ--------GGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQI   68 (235)
T ss_pred             ceeeeecchhheEeeec--------CCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceE
Confidence            35889999999953221        1223468999999999999999999999999999999999999999986

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.05  E-value=2.5e-10  Score=122.73  Aligned_cols=60  Identities=23%  Similarity=0.427  Sum_probs=54.8

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|+++.|+++              ..+++|+||++++||.+++.|+||+||||++++|+|+++|++|++
T Consensus       321 ~~i~~~~v~f~y~~~--------------~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i  380 (547)
T PRK10522        321 QTLELRNVTFAYQDN--------------GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI  380 (547)
T ss_pred             ceEEEEEEEEEeCCC--------------CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            369999999999632              148999999999999999999999999999999999999999986

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.05  E-value=1.7e-10  Score=122.89  Aligned_cols=55  Identities=22%  Similarity=0.432  Sum_probs=49.6

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..++++|+++                    .+++++||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus       266 ~~~l~~~~l~~--------------------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i  320 (510)
T PRK15439        266 APVLTVEDLTG--------------------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRI  320 (510)
T ss_pred             CceEEEeCCCC--------------------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEE
Confidence            34688998873                    14999999999999999999999999999999999999999986

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.05  E-value=2.9e-10  Score=124.30  Aligned_cols=62  Identities=19%  Similarity=0.480  Sum_probs=54.8

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++|++|.|++..           +.+.+++|+||++++||+.+|+|+||+||||++++|+|+.+|++|++
T Consensus         4 ~l~~~nl~~~y~~~~-----------~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i   65 (648)
T PRK10535          4 LLELKDIRRSYPSGE-----------EQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTY   65 (648)
T ss_pred             EEEEeeEEEEeCCCC-----------CCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence            589999999996421           11258999999999999999999999999999999999999999975

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2e-10  Score=105.67  Aligned_cols=59  Identities=27%  Similarity=0.505  Sum_probs=51.4

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~--~~pTsG~a  478 (479)
                      .++|+||+-.-.++              +..++++||+|++||+.+++|||||||||+.+.|+|.  +.+|+|++
T Consensus         3 ~L~I~dLhv~v~~~--------------keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I   63 (251)
T COG0396           3 MLEIKDLHVEVEGK--------------KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI   63 (251)
T ss_pred             eeEEeeeEEEecCc--------------hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceE
Confidence            47888888776431              2589999999999999999999999999999999995  69999986

>PLN03211 ABC transporter G-25; Provisional

Probab=99.04  E-value=1.5e-10  Score=126.19  Aligned_cols=45  Identities=24%  Similarity=0.434  Sum_probs=42.2

Q ss_pred             cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC--Cccc
Q 011717          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT--GGDG  478 (479)
Q Consensus       434 ~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT--sG~a  478 (479)
                      +.+++|+|+.+++||++||+|+|||||||++++|+|..+|+  +|++
T Consensus        81 ~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I  127 (659)
T PLN03211         81 RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTI  127 (659)
T ss_pred             CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEE
Confidence            46999999999999999999999999999999999999885  8876

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.04  E-value=2.5e-10  Score=124.04  Aligned_cols=63  Identities=17%  Similarity=0.324  Sum_probs=56.8

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ...++++|++..|+...            + ..++|+||++++||.+|++|.||+||||+.|+|+|+++|++|+++
T Consensus       469 ~g~I~~~nvsf~y~~~~------------~-~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~  531 (709)
T COG2274         469 QGEIEFENVSFRYGPDD------------P-PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL  531 (709)
T ss_pred             CceEEEEEEEEEeCCCC------------c-chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence            45699999999996542            1 589999999999999999999999999999999999999999863

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.03  E-value=4e-10  Score=121.29  Aligned_cols=64  Identities=19%  Similarity=0.284  Sum_probs=55.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|+++.|++..          ..+..+++|+||++++||++++.|+||+||||++++|+|+++|++|++
T Consensus       336 ~~i~~~~v~f~y~~~~----------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i  399 (555)
T TIGR01194       336 DSIELKDVHMNPKAPE----------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI  399 (555)
T ss_pred             ceEEEEEEEEEeCCCC----------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            4699999999996421          011258999999999999999999999999999999999999999986

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.03  E-value=3.1e-10  Score=122.99  Aligned_cols=62  Identities=24%  Similarity=0.434  Sum_probs=55.6

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..++++|++..|++..             ..+++|+||++++||++++.|+||+||||++++|+|+++|++|+++
T Consensus       340 ~~i~~~~vsf~y~~~~-------------~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~  401 (582)
T PRK11176        340 GDIEFRNVTFTYPGKE-------------VPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL  401 (582)
T ss_pred             CeEEEEEEEEecCCCC-------------CccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEE
Confidence            3599999999996431             1589999999999999999999999999999999999999999863

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.03  E-value=2.7e-10  Score=126.04  Aligned_cols=63  Identities=24%  Similarity=0.460  Sum_probs=56.1

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..++++|++..|++..            ++.+++|+||++++||.+++.|+||+||||+++.|+|+++|++|+++
T Consensus       477 ~~I~~~nVsf~Y~~~~------------~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~  539 (711)
T TIGR00958       477 GLIEFQDVSFSYPNRP------------DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL  539 (711)
T ss_pred             CeEEEEEEEEECCCCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence            4699999999996421            12589999999999999999999999999999999999999999863

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.03  E-value=3e-10  Score=119.57  Aligned_cols=63  Identities=25%  Similarity=0.403  Sum_probs=57.0

Q ss_pred             CCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       402 ~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+..+.++|++|.|++.              +.-++++||.|.+|+..||+|+|||||||++++|+|...|++|++
T Consensus       317 ~g~~vl~~~~~~~~y~~~--------------~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v  379 (530)
T COG0488         317 LGKLVLEFENVSKGYDGG--------------RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV  379 (530)
T ss_pred             CCCeeEEEeccccccCCC--------------ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceE
Confidence            347899999999999643              157999999999999999999999999999999999999999975

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.03  E-value=3.4e-10  Score=122.19  Aligned_cols=61  Identities=25%  Similarity=0.355  Sum_probs=54.8

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+++++++..|++..             ..+++|+||++++||++++.|+||+||||++++|+|+++|++|++
T Consensus       312 ~~I~~~~v~~~y~~~~-------------~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i  372 (569)
T PRK10789        312 GELDVNIRQFTYPQTD-------------HPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI  372 (569)
T ss_pred             CcEEEEEEEEECCCCC-------------CccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE
Confidence            3589999999996421             158999999999999999999999999999999999999999986

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=3e-10  Score=101.35  Aligned_cols=45  Identities=29%  Similarity=0.466  Sum_probs=43.2

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .-..++||++.+||.+-+-|||||||||+++||+|+..|++|+++
T Consensus        16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~   60 (209)
T COG4133          16 TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY   60 (209)
T ss_pred             eeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEE
Confidence            579999999999999999999999999999999999999999875

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.01  E-value=5e-10  Score=123.80  Aligned_cols=61  Identities=23%  Similarity=0.418  Sum_probs=55.4

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|++..|++..             ..+++|+||++++||++++.|+||+||||++++|.|+++|++|++
T Consensus       462 ~~I~~~~vsf~Y~~~~-------------~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I  522 (694)
T TIGR03375       462 GEIEFRNVSFAYPGQE-------------TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV  522 (694)
T ss_pred             ceEEEEEEEEEeCCCC-------------ccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            4699999999996431             158999999999999999999999999999999999999999986

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.00  E-value=5.8e-10  Score=123.58  Aligned_cols=61  Identities=16%  Similarity=0.245  Sum_probs=55.3

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..++++|++..|++.              ..+++|+||++++||.+++.|+|||||||++++|.|+++|++|+++
T Consensus       472 ~~I~~~~vsf~y~~~--------------~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~  532 (708)
T TIGR01193       472 GDIVINDVSYSYGYG--------------SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL  532 (708)
T ss_pred             CcEEEEEEEEEcCCC--------------CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEE
Confidence            469999999999532              1589999999999999999999999999999999999999999863

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=4.1e-10  Score=116.48  Aligned_cols=59  Identities=31%  Similarity=0.494  Sum_probs=52.9

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++.+||+..|++++              ++++|+||++++||.++|+|++||||||++++|.|+.+|++|++
T Consensus       320 ei~~~~l~~~y~~g~--------------~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I  378 (559)
T COG4988         320 EISLENLSFRYPDGK--------------PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI  378 (559)
T ss_pred             eeeecceEEecCCCC--------------cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence            344559999997541              59999999999999999999999999999999999999999985

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.99  E-value=5e-10  Score=123.78  Aligned_cols=61  Identities=18%  Similarity=0.322  Sum_probs=55.3

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|++..|++..             ..+++|+||++++||++++.|+||+||||++++|+|+++|++|++
T Consensus       454 ~~i~~~~vsf~y~~~~-------------~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I  514 (694)
T TIGR01846       454 GAITFENIRFRYAPDS-------------PEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV  514 (694)
T ss_pred             CeEEEEEEEEEcCCCC-------------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            4699999999996431             148999999999999999999999999999999999999999986

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.98  E-value=4.9e-10  Score=131.69  Aligned_cols=62  Identities=18%  Similarity=0.328  Sum_probs=55.8

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .++++||++.|++.            +.+.+++|+||++++||++||+|+|||||||++++|+|+++|++|+++
T Consensus       382 ~I~~~nVsf~Y~~~------------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~  443 (1466)
T PTZ00265        382 KIQFKNVRFHYDTR------------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDII  443 (1466)
T ss_pred             cEEEEEEEEEcCCC------------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEE
Confidence            59999999999642            123599999999999999999999999999999999999999999873

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.98  E-value=1.2e-07  Score=106.30  Aligned_cols=293  Identities=20%  Similarity=0.202  Sum_probs=145.4

Q ss_pred             HHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc--cCchHHHHHHHHHHHHHHHHHHH
Q 011717          137 LVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFL--NNSFAVLFLLFFLFELNMTGFAF  214 (479)
Q Consensus       137 iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~--~~~~~~l~ll~~l~g~s~i~~~~  214 (479)
                      .|.+|++..-      =-.++++-++-.+.++..-++.+.++.++.+...  .+.  ...+...++++++...++..+-=
T Consensus       519 pv~~Khr~~~------fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~--gl~~~A~rFF~~fL~lf~~~~~~s~lFr  590 (1391)
T KOG0065|consen  519 PVFYKHRDLS------FYPPWAEALASTLLKIPSSFIESVVFVIITYFLI--GLKRNAGRFFIQFLFLFLCQFCMSGLFR  590 (1391)
T ss_pred             chHHHhhccc------ccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666654331      2356999999999999888887766665543321  122  22455555556666666666666


Q ss_pred             HHHHhcCCchhhhHHHHHHHHH-HHHHHHHHhhccc-cCcccchhhhhhheecCh-HHHHHHHHHHHHhcCC--CCC-cc
Q 011717          215 MFSAFISKSSSSTTIGFSVFIV-GFLTQLVTAFGFP-YSDQFSNTYRTIWSLFPP-NLLAEALQLLSDATET--PQD-IG  288 (479)
Q Consensus       215 ~~S~fF~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~P~-~~~~~~~~~i~~~~~~--~~~-~~  288 (479)
                      +++...++-..|...+.+..++ .+..      ++. ...++..+++|+..+.|. +++...+.  .+....  ... .|
T Consensus       591 ~ia~l~~t~~~An~~g~~~~L~i~m~~------Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~--NEF~~~~~~c~p~g  662 (1391)
T KOG0065|consen  591 FIASLSRTLSIANLIGGILLLVLFMYG------GFVIPKKDMPPWFRWIAYINPLMYAFESLMS--NEFHGRRWPCSPSG  662 (1391)
T ss_pred             HHHHhcchHHHHhhHhHHHHHHHHHHc------ceeeeccccchHHHHHHHHCHHHHHHHHHHH--hhhhcccCCCCCCC
Confidence            6677767666666665443222 1111      111 234567788999888773 44433332  211110  000 00


Q ss_pred             cccccCc----cCC------C---------------C-CCcccccHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCc
Q 011717          289 ISWSRRA----ECA------P---------------N-DTECVITINDIYIWLVATFFVWFILAIYLDNIIPNAAGVRKS  342 (479)
Q Consensus       289 ~~~~~~~----~~~------~---------------~-~~~~~~~~~~~~~~l~~~~~ly~lL~~yld~v~p~~~g~~~~  342 (479)
                      =.++|..    .|.      .               . ........+.++.+.++-.+++.+++-|++-...+..-+.  
T Consensus       663 p~y~n~~~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~~~~~~~l~--  740 (1391)
T KOG0065|consen  663 PAYDNISIENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPLKKSGAILV--  740 (1391)
T ss_pred             CcccccccccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCccccccceee--
Confidence            0000100    010      0               0 0001134566667777777788888888653211110000  


Q ss_pred             ccccccccccCCCCCCccccCccccccCCCCCCCCCCCCChhhHHHHHHHHhhhhcCCCCCCceEEEecceEEcCCCCcc
Q 011717          343 TFYFLKPGYWTGKGGNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKI  422 (479)
Q Consensus       343 ~~f~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~dv~~e~~~~~~~~~~~~~~~~~~i~i~~l~K~y~~~~~~  422 (479)
                          +++    ++.+.+.+..+.      .+..  ...+|....+++..+ ....+.....+.....+|+..+-+.+.  
T Consensus       741 ----~~~----~~~~~~~~~~~~------~~~~--~~~~~s~~~~~~~~~-~~~~~~~~~~~~V~~w~dl~~~~~~qG--  801 (1391)
T KOG0065|consen  741 ----FKK----GKEKKKVKSAGS------SSEI--EKLDDSSHQEKNKMV-LPFTPLSLTFKDVFYWVDLPYEMPIQG--  801 (1391)
T ss_pred             ----ecc----chhhhcchhccc------cccc--ccccccccccccccc-CCCccccccccceEEEEeCCccccccc--
Confidence                000    000000000000      0000  000000000000000 000011112245677777776653321  


Q ss_pred             ccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          423 GCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       423 ~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                               .++.-++|++=-+.+|-.++|+|.+||||||++++|+|-.  |.|.
T Consensus       802 ---------~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~--t~G~  845 (1391)
T KOG0065|consen  802 ---------GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRK--TGGY  845 (1391)
T ss_pred             ---------cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCc--ccce
Confidence                     2236899999999999999999999999999999999964  4553

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.96  E-value=6.8e-10  Score=97.46  Aligned_cols=64  Identities=22%  Similarity=0.447  Sum_probs=57.2

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..|.+++++|+-+...           ..++.+++++|.|.+||-++++|+.|+||||++-+|+|+..||||+++
T Consensus         5 ~ii~~~~l~ktvg~~~-----------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~   68 (228)
T COG4181           5 NIIEVHHLSKTVGQGE-----------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVR   68 (228)
T ss_pred             ceeehhhhhhhhcCCC-----------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEE
Confidence            3688999999986542           346799999999999999999999999999999999999999999873

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.96  E-value=6.3e-10  Score=113.62  Aligned_cols=60  Identities=28%  Similarity=0.506  Sum_probs=55.9

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++|++.+|++..             .+|++|+||++.+||-++++|+.|+||||++..|+|.++|++|++
T Consensus       336 ~l~~~~vsF~y~~~~-------------~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i  395 (573)
T COG4987         336 ALELRNVSFTYPGQQ-------------TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSI  395 (573)
T ss_pred             eeeeccceeecCCCc-------------cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCee
Confidence            799999999997652             259999999999999999999999999999999999999999986

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.95  E-value=7.2e-10  Score=99.34  Aligned_cols=59  Identities=29%  Similarity=0.560  Sum_probs=52.6

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +.+.+++-.|.+.             +..|++|+||++.+||..++|||.|+||||++|+++|..+|+.|++
T Consensus         4 l~~~~~sl~y~g~-------------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i   62 (259)
T COG4525           4 LNVSHLSLSYEGK-------------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI   62 (259)
T ss_pred             eehhheEEecCCc-------------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceE
Confidence            5567888899653             1369999999999999999999999999999999999999999976

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.94  E-value=1.3e-09  Score=118.42  Aligned_cols=60  Identities=22%  Similarity=0.390  Sum_probs=54.6

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+++++++..|+++              ..+++|+||++++||.+++.|+||+||||++++|+|+++|++|++
T Consensus       339 ~~i~~~~v~f~y~~~--------------~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I  398 (592)
T PRK10790        339 GRIDIDNVSFAYRDD--------------NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI  398 (592)
T ss_pred             CeEEEEEEEEEeCCC--------------CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence            359999999999532              148999999999999999999999999999999999999999986

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.94  E-value=1.4e-09  Score=118.01  Aligned_cols=60  Identities=22%  Similarity=0.347  Sum_probs=54.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|++..|+++              ...++|+||++++||.+++.|+||+||||++++|+|+++|++|++
T Consensus       333 ~~I~~~~vsf~y~~~--------------~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I  392 (588)
T PRK13657        333 GAVEFDDVSFSYDNS--------------RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI  392 (588)
T ss_pred             CeEEEEEEEEEeCCC--------------CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence            369999999999632              147999999999999999999999999999999999999999986

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.94  E-value=1.3e-09  Score=118.14  Aligned_cols=62  Identities=23%  Similarity=0.367  Sum_probs=55.4

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|++..|++..            .+.+++|+||++++||..++.|+||+||||+++.|+|+++|++|++
T Consensus       336 ~~i~~~~v~f~y~~~~------------~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I  397 (576)
T TIGR02204       336 GEIEFEQVNFAYPARP------------DQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI  397 (576)
T ss_pred             ceEEEEEEEEECCCCC------------CCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence            4699999999996421            1258999999999999999999999999999999999999999986

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.93  E-value=9.3e-10  Score=105.48  Aligned_cols=75  Identities=23%  Similarity=0.373  Sum_probs=60.1

Q ss_pred             ceEEEecceEEcCCCCc-------ccccc--ccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717          405 VAVQIRGLVKTFPGTRK-------IGCCC--KCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~-------~~~~~--~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs  475 (479)
                      ..++++|+.|.|++...       .|.-.  ..++..-+..|+|+||+|++||||.+.|-.|+||||++++|.++.+||+
T Consensus         3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~   82 (386)
T COG4175           3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR   82 (386)
T ss_pred             ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence            46899999999975421       00000  0134556789999999999999999999999999999999999999999


Q ss_pred             cccC
Q 011717          476 GDGC  479 (479)
Q Consensus       476 G~a~  479 (479)
                      |+++
T Consensus        83 G~il   86 (386)
T COG4175          83 GEIL   86 (386)
T ss_pred             ceEE
Confidence            9873

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.90  E-value=2.1e-09  Score=116.34  Aligned_cols=62  Identities=21%  Similarity=0.363  Sum_probs=55.5

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..++++|++..|++..             ...++|+||.+++||+.++.|+||+||||+++.|+|+++|++|+++
T Consensus       329 ~~i~~~~v~f~y~~~~-------------~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~  390 (571)
T TIGR02203       329 GDVEFRNVTFRYPGRD-------------RPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL  390 (571)
T ss_pred             CeEEEEEEEEEcCCCC-------------CccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEE
Confidence            4599999999996431             1479999999999999999999999999999999999999999873

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=2e-09  Score=113.75  Aligned_cols=63  Identities=24%  Similarity=0.373  Sum_probs=57.9

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ...|+.+|++..|+.+            |++..++|+||++++||+++|+||+|.||||..++|--++.||+|++
T Consensus       463 ~G~IeF~~VsFaYP~R------------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I  525 (716)
T KOG0058|consen  463 QGVIEFEDVSFAYPTR------------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI  525 (716)
T ss_pred             cceEEEEEeeeecCCC------------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence            4579999999999753            45578999999999999999999999999999999999999999986

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.88  E-value=2.9e-09  Score=110.60  Aligned_cols=63  Identities=19%  Similarity=0.403  Sum_probs=55.8

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC----Cccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT----GGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT----sG~a  478 (479)
                      ..++++||++.|....           ..+.||+|+||+|.+||++|++|-.|+|||||...|.|++++.    +|++
T Consensus         4 ~lL~V~nL~v~~~~~~-----------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I   70 (539)
T COG1123           4 PLLEVENLTVEFATDG-----------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEV   70 (539)
T ss_pred             ceEEEeceEEEEecCC-----------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEE
Confidence            3799999999997541           2357999999999999999999999999999999999999987    6765

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.87  E-value=2.3e-09  Score=119.57  Aligned_cols=64  Identities=27%  Similarity=0.476  Sum_probs=58.6

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +..++.+|++++|+.+            +++..++|+||.|++||+++|+||+|+||||.+++|.+++.|++|+++
T Consensus       348 ~g~ief~nV~FsYPsR------------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~  411 (1228)
T KOG0055|consen  348 KGEIEFRNVCFSYPSR------------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVL  411 (1228)
T ss_pred             ccceEEEEEEecCCCC------------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEE
Confidence            4579999999999753            356789999999999999999999999999999999999999999874

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.87  E-value=2.7e-09  Score=103.40  Aligned_cols=61  Identities=23%  Similarity=0.561  Sum_probs=52.5

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-----CCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-----TGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-----TsG~a  478 (479)
                      ++|+||+-.|....           +.+.||+|+||++++||++||+|-.|+|||||-+.|.|++++     ++|++
T Consensus         2 L~v~nL~v~f~~~~-----------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i   67 (316)
T COG0444           2 LEVKNLSVSFPTDA-----------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI   67 (316)
T ss_pred             ceEeeeEEEEecCC-----------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEE
Confidence            67899999996532           245799999999999999999999999999999999999983     55654

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.86  E-value=3.9e-09  Score=114.55  Aligned_cols=60  Identities=27%  Similarity=0.338  Sum_probs=52.4

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..++++|++..|.++              ..+++|+||++++||.++++|++|+||||+++.|.|++ |++|+++
T Consensus       348 ~~i~~~~vsf~~~~~--------------~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~  407 (588)
T PRK11174        348 VTIEAEDLEILSPDG--------------KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLK  407 (588)
T ss_pred             ceEEEEeeEEeccCC--------------CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEE
Confidence            359999998665332              15899999999999999999999999999999999999 9999863

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.80  E-value=6.1e-09  Score=94.86  Aligned_cols=57  Identities=30%  Similarity=0.597  Sum_probs=51.6

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs  475 (479)
                      ...++++||+..|++.               +|++|+|+.+++++|++|+||.|+||||++++|--+....+
T Consensus         5 ~~~~~~~~l~~yYg~~---------------~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~   61 (253)
T COG1117           5 IPAIEVRDLNLYYGDK---------------HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP   61 (253)
T ss_pred             cceeEecceeEEECch---------------hhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCc
Confidence            4679999999999642               79999999999999999999999999999999998877666

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.80  E-value=8.2e-09  Score=111.55  Aligned_cols=61  Identities=23%  Similarity=0.432  Sum_probs=55.5

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..++++|++..|+++              +.+++|+||++++||.+|+.|++||||||+++.|.|+++|++|+++
T Consensus       327 ~~I~f~~vsf~y~~~--------------~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~  387 (567)
T COG1132         327 GSIEFENVSFSYPGK--------------KPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL  387 (567)
T ss_pred             CeEEEEEEEEEcCCC--------------CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEE
Confidence            449999999999642              1589999999999999999999999999999999999999999863

>PLN03130 ABC transporter C family member; Provisional

Probab=98.79  E-value=8.2e-09  Score=122.68  Aligned_cols=62  Identities=19%  Similarity=0.318  Sum_probs=55.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..|+++|++..|++..             ..+++|+||++++||.+|++|++||||||+++.|.|+++|++|+++
T Consensus      1236 g~I~f~nVsf~Y~~~~-------------~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~ 1297 (1622)
T PLN03130       1236 GSIKFEDVVLRYRPEL-------------PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRIL 1297 (1622)
T ss_pred             CcEEEEEEEEEeCCCC-------------CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEE
Confidence            4699999999995421             1589999999999999999999999999999999999999999863

>PLN03232 ABC transporter C family member; Provisional

Probab=98.77  E-value=9.8e-09  Score=121.70  Aligned_cols=62  Identities=16%  Similarity=0.255  Sum_probs=55.5

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..|+++|++..|++..             ..+++|+||++++||.+|++|++||||||++++|.|+++|++|++.
T Consensus      1233 g~I~f~nVsf~Y~~~~-------------~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~ 1294 (1495)
T PLN03232       1233 GSIKFEDVHLRYRPGL-------------PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIM 1294 (1495)
T ss_pred             CcEEEEEEEEEECCCC-------------CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEE
Confidence            3599999999995321             1589999999999999999999999999999999999999999863

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.77  E-value=7e-09  Score=90.88  Aligned_cols=45  Identities=18%  Similarity=0.435  Sum_probs=43.1

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..++++||.|.+||-.++.||.|+||||++++++-+.+||+|+.+
T Consensus        17 ~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~   61 (223)
T COG4619          17 KILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL   61 (223)
T ss_pred             eeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEE
Confidence            579999999999999999999999999999999999999999864

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.76  E-value=1.1e-08  Score=121.43  Aligned_cols=61  Identities=18%  Similarity=0.297  Sum_probs=55.1

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|+++.|++..             ..+++|+||++++||+++++|+||+||||++++|.|+++|++|++
T Consensus       635 ~~i~~~~~~~~~~~~~-------------~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i  695 (1522)
T TIGR00957       635 NSITVHNATFTWARDL-------------PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV  695 (1522)
T ss_pred             CcEEEEEeEEEcCCCC-------------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEE
Confidence            3699999999996421             158999999999999999999999999999999999999999986

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.76  E-value=1.3e-08  Score=100.34  Aligned_cols=62  Identities=23%  Similarity=0.372  Sum_probs=55.2

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      -..++.+|++..|....              --|.-+|+++++||++=|.|.||+||||..+.|||+++|.+|+++
T Consensus       320 ~~~lelrnvrfay~~~~--------------FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~  381 (546)
T COG4615         320 WKTLELRNVRFAYQDNA--------------FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL  381 (546)
T ss_pred             ccceeeeeeeeccCccc--------------ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCcee
Confidence            35799999999996531              248899999999999999999999999999999999999999874

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=98.75  E-value=6.7e-09  Score=113.04  Aligned_cols=46  Identities=28%  Similarity=0.393  Sum_probs=42.2

Q ss_pred             CcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---Cccc
Q 011717          433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDG  478 (479)
Q Consensus       433 ~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT---sG~a  478 (479)
                      ++.+++|+|+.+++||+++++|+|||||||++++|+|..+|+   +|++
T Consensus        37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i   85 (617)
T TIGR00955        37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSV   85 (617)
T ss_pred             ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEE
Confidence            457999999999999999999999999999999999998875   6765

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=98.75  E-value=1.1e-08  Score=102.90  Aligned_cols=81  Identities=20%  Similarity=0.287  Sum_probs=63.3

Q ss_pred             hhHHHHHHHHhhhh-cCCCCCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHH
Q 011717          384 DVLEEENMVKQQIR-ESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTT  462 (479)
Q Consensus       384 dv~~e~~~~~~~~~-~~~~~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTT  462 (479)
                      |..+|++.+.+... .+....+..|+.+|++..|..+              +..++|+||++++|+..+|+||.||||||
T Consensus       514 dllkee~eVvd~P~a~pl~~~~G~i~fsnvtF~Y~p~--------------k~vl~disF~v~pGktvAlVG~SGaGKST  579 (790)
T KOG0056|consen  514 DLLKEEPEVVDLPGAPPLKVTQGKIEFSNVTFAYDPG--------------KPVLSDISFTVQPGKTVALVGPSGAGKST  579 (790)
T ss_pred             HHhhcCchhhcCCCCCCccccCCeEEEEEeEEecCCC--------------CceeecceEEecCCcEEEEECCCCCchhH
Confidence            44455444443221 2222345689999999999543              26899999999999999999999999999


Q ss_pred             HHHHHhCCCCCCCccc
Q 011717          463 TISCLTGITPVTGGDG  478 (479)
Q Consensus       463 t~~mLtG~~~pTsG~a  478 (479)
                      .|++|-..+..++|.+
T Consensus       580 imRlLfRffdv~sGsI  595 (790)
T KOG0056|consen  580 IMRLLFRFFDVNSGSI  595 (790)
T ss_pred             HHHHHHHHhhccCceE
Confidence            9999999999999975

>PTZ00243 ABC transporter; Provisional

Probab=98.73  E-value=1.4e-08  Score=120.52  Aligned_cols=62  Identities=19%  Similarity=0.323  Sum_probs=55.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..|+++|++..|+++.             ..+++|+||+|++||.+|++|++||||||+++.|.|+++|++|+++
T Consensus      1307 G~I~f~nVsf~Y~~~~-------------~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~ 1368 (1560)
T PTZ00243       1307 GSLVFEGVQMRYREGL-------------PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIR 1368 (1560)
T ss_pred             CeEEEEEEEEEeCCCC-------------CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE
Confidence            3599999999996431             1589999999999999999999999999999999999999999863

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.71  E-value=2.2e-08  Score=102.58  Aligned_cols=62  Identities=21%  Similarity=0.333  Sum_probs=55.4

Q ss_pred             CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .+..|+.+|++..|+.++              +.++|+||+|++||-+|+.|.||+||||.+++|-+.+. .+|+++
T Consensus       348 ~~~~I~F~dV~f~y~~k~--------------~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~  409 (591)
T KOG0057|consen  348 FGGSIEFDDVHFSYGPKR--------------KVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSIL  409 (591)
T ss_pred             CCCcEEEEeeEEEeCCCC--------------ceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEE
Confidence            345699999999996542              48999999999999999999999999999999999999 999864

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=98.70  E-value=2e-08  Score=119.30  Aligned_cols=62  Identities=19%  Similarity=0.231  Sum_probs=55.9

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..|+++|++..|+++.             ..+++|+||++++||.+|++|++||||||+++.|.|+++|++|+++
T Consensus      1283 g~I~f~nVsf~Y~~~~-------------~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~ 1344 (1522)
T TIGR00957      1283 GRVEFRNYCLRYREDL-------------DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEII 1344 (1522)
T ss_pred             CcEEEEEEEEEeCCCC-------------cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEE
Confidence            4699999999996431             1589999999999999999999999999999999999999999863

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.70  E-value=1.8e-08  Score=87.72  Aligned_cols=57  Identities=23%  Similarity=0.451  Sum_probs=53.2

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      .|+++++.+.|+..               .|+-|++|+-++||...||||.||||||+++.|.=+..|.+|+
T Consensus         2 sirv~~in~~yg~~---------------q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~   58 (242)
T COG4161           2 SIQLNGINCFYGAH---------------QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT   58 (242)
T ss_pred             ceEEcccccccccc---------------hheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCe
Confidence            58999999999654               5999999999999999999999999999999999999999996

>PLN03140 ABC transporter G family member; Provisional

Probab=98.69  E-value=1.3e-08  Score=119.47  Aligned_cols=49  Identities=29%  Similarity=0.356  Sum_probs=45.1

Q ss_pred             CCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC---Cccc
Q 011717          430 KTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT---GGDG  478 (479)
Q Consensus       430 ~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT---sG~a  478 (479)
                      |+.++.+++|+|+.+++||+++|||||||||||++++|+|.++|+   +|++
T Consensus       174 k~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I  225 (1470)
T PLN03140        174 KKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEI  225 (1470)
T ss_pred             CCccceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEE
Confidence            334667999999999999999999999999999999999999998   8876

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=98.67  E-value=3.1e-08  Score=116.74  Aligned_cols=58  Identities=17%  Similarity=0.227  Sum_probs=51.5

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      ..|+++||+..|+++            ++..+++|+||++++||++||+|++|+||||++++|.|+++|+
T Consensus      1164 g~I~f~nVsF~Y~~~------------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~ 1221 (1466)
T PTZ00265       1164 GKIEIMDVNFRYISR------------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLK 1221 (1466)
T ss_pred             ceEEEEEEEEECCCC------------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCc
Confidence            469999999999642            1225899999999999999999999999999999999999993

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.66  E-value=1.6e-08  Score=103.37  Aligned_cols=62  Identities=29%  Similarity=0.370  Sum_probs=55.6

Q ss_pred             CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +.+.+.+.|++..|.+..              .-.++++|++..++-.+++|||||||||++++++|++.|+.|.+
T Consensus       386 p~pvi~~~nv~F~y~~~~--------------~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~v  447 (614)
T KOG0927|consen  386 PPPVIMVQNVSFGYSDNP--------------MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMV  447 (614)
T ss_pred             CCCeEEEeccccCCCCcc--------------hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccc
Confidence            367899999999996542              36899999999999999999999999999999999999999975

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=98.66  E-value=2e-08  Score=118.04  Aligned_cols=47  Identities=21%  Similarity=0.217  Sum_probs=43.1

Q ss_pred             CCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC----CCCCccc
Q 011717          432 SPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT----PVTGGDG  478 (479)
Q Consensus       432 ~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~----~pTsG~a  478 (479)
                      +++.+++|+|+.+++||+++|+|+|||||||++++|+|+.    +|++|++
T Consensus        72 ~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I  122 (1394)
T TIGR00956        72 KTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVI  122 (1394)
T ss_pred             CcceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEE
Confidence            4457999999999999999999999999999999999986    5789986

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.64  E-value=3.6e-08  Score=81.36  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=32.9

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      .|+++++|.+++||+++|+|++|+||||++++|.
T Consensus         3 ~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           3 TSLHGVLVDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             eEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            6999999999999999999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.61  E-value=3e-08  Score=87.83  Aligned_cols=60  Identities=20%  Similarity=0.456  Sum_probs=55.3

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+.+.++||.|.|+..               ..++++||...+|++.+++|..|+||||.+++|.=+..|+.|.+
T Consensus         4 ~~~l~v~dlHK~~G~~---------------eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I   63 (256)
T COG4598           4 ENALEVEDLHKRYGEH---------------EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI   63 (256)
T ss_pred             ccceehhHHHhhcccc---------------hhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceE
Confidence            3578999999999643               58999999999999999999999999999999999999999975

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.60  E-value=6.5e-08  Score=114.66  Aligned_cols=61  Identities=25%  Similarity=0.383  Sum_probs=54.3

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..|+++||+..|++..             ..+++|+||+|++||.+|++|++||||||++++|.|+++ ++|+++
T Consensus      1216 g~I~f~nVs~~Y~~~~-------------~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~ 1276 (1490)
T TIGR01271      1216 GQMDVQGLTAKYTEAG-------------RAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQ 1276 (1490)
T ss_pred             CeEEEEEEEEEeCCCC-------------cceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEE
Confidence            4699999999996431             258999999999999999999999999999999999997 899863

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=98.57  E-value=1.2e-07  Score=96.41  Aligned_cols=63  Identities=30%  Similarity=0.522  Sum_probs=54.6

Q ss_pred             CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++..+.++++...=++.             +++.|+|+||.+.+||..|++||.|+||||+-++|+|..+|++|.+
T Consensus       331 P~g~L~Ve~l~~~PPg~-------------~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~V  393 (580)
T COG4618         331 PQGALSVERLTAAPPGQ-------------KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSV  393 (580)
T ss_pred             CCceeeEeeeeecCCCC-------------CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcE
Confidence            45678899887755433             1368999999999999999999999999999999999999999986

>PTZ00243 ABC transporter; Provisional

Probab=98.56  E-value=5.9e-08  Score=115.25  Aligned_cols=45  Identities=22%  Similarity=0.404  Sum_probs=43.2

Q ss_pred             cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       434 ~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +.+++|+||.+++||+++++|+|||||||++++|.|+++|++|++
T Consensus       673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i  717 (1560)
T PTZ00243        673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV  717 (1560)
T ss_pred             ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence            368999999999999999999999999999999999999999986

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=98.51  E-value=8.9e-08  Score=113.54  Aligned_cols=44  Identities=23%  Similarity=0.416  Sum_probs=42.7

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++|+||++++||+++++|+|||||||++++|.|+.+|++|++
T Consensus       440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i  483 (1490)
T TIGR01271       440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI  483 (1490)
T ss_pred             cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            58999999999999999999999999999999999999999986

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PLN03232 ABC transporter C family member; Provisional

Probab=98.49  E-value=2e-07  Score=110.69  Aligned_cols=62  Identities=19%  Similarity=0.298  Sum_probs=54.5

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|++..|++..            +...++|+||++++||.+++.|++|+||||+++.|.|+++|++|.+
T Consensus       613 ~~I~~~~vsF~y~~~~------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i  674 (1495)
T PLN03232        613 PAISIKNGYFSWDSKT------------SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS  674 (1495)
T ss_pred             CcEEEEeeEEEcCCCC------------CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCE
Confidence            3699999999996421            1257999999999999999999999999999999999999999853

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.47  E-value=8.3e-08  Score=98.32  Aligned_cols=40  Identities=18%  Similarity=0.356  Sum_probs=37.8

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      .|++++|+++++||+++|+|++|+||||+++  .|+..|++|
T Consensus        20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sG   59 (504)
T TIGR03238        20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEG   59 (504)
T ss_pred             HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCC
Confidence            5999999999999999999999999999999  788888888

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PLN03130 ABC transporter C family member; Provisional

Probab=98.46  E-value=2.2e-07  Score=110.76  Aligned_cols=62  Identities=19%  Similarity=0.337  Sum_probs=54.9

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC-ccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG-GDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs-G~a  478 (479)
                      ..++++|++..|++..            +..+++|+||++++||.+++.|++|+||||+++.|.|+++|++ |++
T Consensus       613 ~~I~~~nvsf~y~~~~------------~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I  675 (1622)
T PLN03130        613 PAISIKNGYFSWDSKA------------ERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASV  675 (1622)
T ss_pred             CceEEEeeEEEccCCC------------CCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceE
Confidence            3699999999996421            1258999999999999999999999999999999999999999 875

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.44  E-value=3.6e-07  Score=90.60  Aligned_cols=72  Identities=24%  Similarity=0.370  Sum_probs=59.7

Q ss_pred             CCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       402 ~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +.+..++.++++..|+-+.++    +++....++|||++||++.+||-.||+|..|+||||+=..|.++++++ |++
T Consensus       272 ~~~~ll~~~~v~v~f~i~~g~----~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I  343 (534)
T COG4172         272 DAPVLLEVEDLRVWFPIKGGF----LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEI  343 (534)
T ss_pred             CCCceEEecceEEEEecCCcc----ccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceE
Confidence            446789999999999765321    112334578999999999999999999999999999999999999877 765

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.43  E-value=2.1e-07  Score=104.24  Aligned_cols=62  Identities=26%  Similarity=0.419  Sum_probs=57.3

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..|+.+|++..|+.            +|.+..++|+||+|++||-++|+||.|+||||.+++|...+.|++|.+
T Consensus       986 G~I~~~~V~F~YPs------------RP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V 1047 (1228)
T KOG0055|consen  986 GDIEFRNVSFAYPT------------RPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV 1047 (1228)
T ss_pred             eEEEEeeeEeeCCC------------CCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence            35999999999974            356689999999999999999999999999999999999999999986

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=98.42  E-value=4.8e-07  Score=81.97  Aligned_cols=59  Identities=29%  Similarity=0.459  Sum_probs=51.1

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      +.+|+++++...|+...              +.+-|+|++++.|.-.-|+|.|||||||++++|.|-.-.-.|
T Consensus        11 ~~aievsgl~f~y~~~d--------------P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~   69 (291)
T KOG2355|consen   11 DFAIEVSGLQFKYKVSD--------------PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGG   69 (291)
T ss_pred             cceEEEeccEEecccCC--------------ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCC
Confidence            56899999999997542              579999999999999999999999999999999996544334

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.28  E-value=5.9e-07  Score=92.26  Aligned_cols=40  Identities=33%  Similarity=0.468  Sum_probs=38.2

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs  475 (479)
                      .|+|++ +.+.+||+++|+|+||+||||+++||+|..+|+.
T Consensus       144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv  183 (434)
T PRK07196        144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADV  183 (434)
T ss_pred             eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCe
Confidence            599999 9999999999999999999999999999988875

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=98.26  E-value=1.1e-06  Score=88.36  Aligned_cols=57  Identities=30%  Similarity=0.429  Sum_probs=45.3

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      ..+...+++|.|++.+                +.-=.=.+++|||.|+|||||-||||..++|+|.++|++|.
T Consensus       341 ~lv~y~~~~k~~g~F~----------------L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~  397 (591)
T COG1245         341 TLVEYPDLKKTYGDFK----------------LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS  397 (591)
T ss_pred             eeeecchheeecCceE----------------EEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC
Confidence            4577778888886431                22122356889999999999999999999999999999994

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.26  E-value=1.5e-06  Score=99.62  Aligned_cols=64  Identities=19%  Similarity=0.292  Sum_probs=57.6

Q ss_pred             CCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       402 ~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+..|+++|++-.|.....             .+++|+||.|++||.+|++|..||||||+++.|=.+..|++|++
T Consensus      1134 P~~G~I~f~~~~~RYrp~lp-------------~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I 1197 (1381)
T KOG0054|consen 1134 PSKGEIEFEDLSLRYRPNLP-------------LVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEI 1197 (1381)
T ss_pred             CCCCeEEEEEeEEEeCCCCc-------------chhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeE
Confidence            34567999999999965421             68999999999999999999999999999999999999999986

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.25  E-value=1.9e-06  Score=88.63  Aligned_cols=60  Identities=13%  Similarity=0.075  Sum_probs=53.1

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ...+..++++|.|..+              ..|+|.++ .+.+||+.+|+|++|+||||+++||+|+..|+.|.+
T Consensus       137 p~~~~r~~v~~~l~TG--------------i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv  196 (450)
T PRK06002        137 PPAMTRARVETGLRTG--------------VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVI  196 (450)
T ss_pred             CCCeEeecceEEcCCC--------------cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeee
Confidence            5678999999999643              25899996 999999999999999999999999999999998754

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=98.19  E-value=2.6e-06  Score=87.49  Aligned_cols=57  Identities=28%  Similarity=0.511  Sum_probs=51.5

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs  475 (479)
                      ...+++.++++.|.+.               .-++|.+|.+.+||-.||+|+||+||||.++.|+|-..|..
T Consensus        73 s~dvk~~sls~s~~g~---------------~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p  129 (614)
T KOG0927|consen   73 SRDVKIESLSLSFHGV---------------ELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIP  129 (614)
T ss_pred             cccceeeeeeeccCCc---------------eeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCC
Confidence            4579999999999653               57999999999999999999999999999999999888764

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.16  E-value=3.8e-06  Score=91.04  Aligned_cols=64  Identities=25%  Similarity=0.394  Sum_probs=51.2

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC---CCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV---TGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p---TsG~a  478 (479)
                      ..+..++++-.-+++.          ++.+.-+||+|..+++||+.|++|+.||||||++++|+|-.+.   ++|++
T Consensus        24 ~~~~~~~~~~~~~~~~----------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~i   90 (613)
T KOG0061|consen   24 VKLSFRNLTLSSKEKS----------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEI   90 (613)
T ss_pred             ceeEEEEEEEEecCCC----------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEE
Confidence            4466777766654321          1345789999999999999999999999999999999998864   77765

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.11  E-value=8.6e-07  Score=92.26  Aligned_cols=42  Identities=29%  Similarity=0.442  Sum_probs=36.1

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      .++++.+..+.+|+|++|+|+||+|||||+.+|++.+.+..|
T Consensus       244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G  285 (484)
T PRK06995        244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHG  285 (484)
T ss_pred             hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcC
Confidence            356667777788999999999999999999999998876665

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=98.10  E-value=6.8e-06  Score=85.07  Aligned_cols=62  Identities=27%  Similarity=0.456  Sum_probs=54.8

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..+++++++-.=+++ +            -+-|+||||.|++|+-.-+-|+||.|||+++++|.|+-+-++|..
T Consensus       431 Dn~i~~e~v~l~tPt~-g------------~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l  492 (659)
T KOG0060|consen  431 DNAIEFEEVSLSTPTN-G------------DLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKL  492 (659)
T ss_pred             cceEEeeeeeecCCCC-C------------ceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeE
Confidence            4789999998887653 1            157999999999999999999999999999999999999999864

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.10  E-value=6.7e-06  Score=71.05  Aligned_cols=39  Identities=31%  Similarity=0.543  Sum_probs=36.1

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      -+.++|++|.+|||..|.||.|+||||+++-+.|-+.+.
T Consensus        17 LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~   55 (213)
T COG4136          17 LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQ   55 (213)
T ss_pred             EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccC
Confidence            588999999999999999999999999999999977653

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.08  E-value=3.7e-06  Score=83.47  Aligned_cols=42  Identities=26%  Similarity=0.388  Sum_probs=39.6

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      .|+|++ +.+.+||+.+++|+||+||||++++|+|...|+.|.
T Consensus        58 ~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~v   99 (326)
T cd01136          58 RAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNV   99 (326)
T ss_pred             EEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEE
Confidence            599999 999999999999999999999999999999988653

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=98.04  E-value=5.9e-06  Score=82.15  Aligned_cols=59  Identities=27%  Similarity=0.469  Sum_probs=51.6

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      .+.+.++||+..|....           ..+.||+++||++++||.++|+|..|+|||-|..-+.|+++-
T Consensus         4 ~~lL~v~nLsV~f~~~~-----------~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~   62 (534)
T COG4172           4 MPLLSIRNLSVAFHQEG-----------GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPS   62 (534)
T ss_pred             CcceeeeccEEEEecCC-----------cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCC
Confidence            45799999999996432           245799999999999999999999999999999999998864

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=98.03  E-value=4.3e-06  Score=83.57  Aligned_cols=62  Identities=26%  Similarity=0.431  Sum_probs=55.3

Q ss_pred             CCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       402 ~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      -.++.+-+++++..|++..              +-.++|+|+|.-..-++++||||-||||+++.|+|-+.|+.|+
T Consensus       582 L~PPvLGlH~VtFgy~gqk--------------pLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE  643 (807)
T KOG0066|consen  582 LNPPVLGLHDVTFGYPGQK--------------PLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGE  643 (807)
T ss_pred             CCCCeeecccccccCCCCC--------------chhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcch
Confidence            3457888999999997642              4688999999999999999999999999999999999999996

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=98.00  E-value=5.8e-06  Score=77.17  Aligned_cols=35  Identities=17%  Similarity=0.345  Sum_probs=33.4

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      .+.+|++++..+|++++|.||||+||||++++++|
T Consensus        17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~   51 (204)
T cd03282          17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIAL   51 (204)
T ss_pred             EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            58999999999999999999999999999999984

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=97.98  E-value=6.3e-06  Score=83.08  Aligned_cols=34  Identities=32%  Similarity=0.508  Sum_probs=31.7

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      ..+|+++||||+||-||||+++||+|.+.|.=|+
T Consensus        97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~  130 (591)
T COG1245          97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGR  130 (591)
T ss_pred             CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCC
Confidence            4689999999999999999999999999998775

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=97.97  E-value=7e-06  Score=84.39  Aligned_cols=59  Identities=15%  Similarity=0.201  Sum_probs=50.5

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      ..++..+.+++.+..+              +.|+|++ +.+.+||..+|+|+||+||||++++|+|...++.|.
T Consensus       127 p~~~~r~~v~~~l~tG--------------i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~v  185 (433)
T PRK07594        127 PPAMVRQPITQPLMTG--------------IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNV  185 (433)
T ss_pred             CCceeccCHhheeCCC--------------ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEE
Confidence            3467777788887432              2699999 999999999999999999999999999999988763

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=97.96  E-value=6.2e-06  Score=85.32  Aligned_cols=43  Identities=23%  Similarity=0.286  Sum_probs=40.7

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .|+|++ +.+.+||+.+|+|+||+||||++++|+|..+|+.|.+
T Consensus       147 ~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI  189 (438)
T PRK07721        147 RAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVI  189 (438)
T ss_pred             hhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEE
Confidence            589999 9999999999999999999999999999999998853

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.96  E-value=1.7e-05  Score=91.08  Aligned_cols=65  Identities=26%  Similarity=0.441  Sum_probs=56.1

Q ss_pred             CCCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          402 DPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       402 ~~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +.+..+.+++.+....+..            +...++|+||.|++||..|+.|+-|+|||++++.|.|+.+.++|++
T Consensus       514 ~~~~~i~i~~~sfsW~~~~------------~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v  578 (1381)
T KOG0054|consen  514 AGENAIEIKNGSFSWDSES------------PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSV  578 (1381)
T ss_pred             CCCceEEEeeeeEecCCCC------------CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceE
Confidence            3456899999888875421            2248999999999999999999999999999999999999999975

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=97.90  E-value=1.2e-05  Score=82.90  Aligned_cols=39  Identities=26%  Similarity=0.497  Sum_probs=37.2

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      .|+|++ +.+.+||+.+|+|+||+||||+++||+|...|+
T Consensus       157 ~aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~~d  195 (451)
T PRK05688        157 RSINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTEAD  195 (451)
T ss_pred             eeecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            699999 999999999999999999999999999988775

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=97.89  E-value=9.9e-06  Score=80.78  Aligned_cols=45  Identities=24%  Similarity=0.398  Sum_probs=40.3

Q ss_pred             cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC--------CCCCCccc
Q 011717          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--------TPVTGGDG  478 (479)
Q Consensus       434 ~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~--------~~pTsG~a  478 (479)
                      -.+++|++|.+++||+.++.|..||||||+++||.|.        +.|+||.+
T Consensus       396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v  448 (593)
T COG2401         396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV  448 (593)
T ss_pred             eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCce
Confidence            3689999999999999999999999999999999984        56777754

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=97.89  E-value=8.2e-06  Score=76.77  Aligned_cols=32  Identities=34%  Similarity=0.542  Sum_probs=26.6

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhC-CCCCCCc
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTG-ITPVTGG  476 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG-~~~pTsG  476 (479)
                      .+||+++|+|+|||||||+++.|++ ++.+.++
T Consensus        26 ~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~   58 (213)
T cd03279          26 DNNGLFLICGPTGAGKSTILDAITYALYGKTPR   58 (213)
T ss_pred             CccCEEEEECCCCCCHHHHHHHheeeEecCccc
Confidence            5699999999999999999999996 4444433

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>PRK08149 ATP synthase SpaL; Validated

Probab=97.88  E-value=1.4e-05  Score=82.16  Aligned_cols=40  Identities=25%  Similarity=0.368  Sum_probs=38.0

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs  475 (479)
                      .|+|++ +.+.+||+.+|+|+||+||||+++||+|...++.
T Consensus       140 ~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv  179 (428)
T PRK08149        140 RAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADV  179 (428)
T ss_pred             EEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCe
Confidence            699999 9999999999999999999999999999888775

>PRK09099 type III secretion system ATPase; Provisional

Probab=97.86  E-value=1.4e-05  Score=82.52  Aligned_cols=42  Identities=21%  Similarity=0.384  Sum_probs=39.7

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      .++|++ +.+.+||+.+++|+||+||||++++|+|...++.|.
T Consensus       152 ~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~v  193 (441)
T PRK09099        152 RIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNV  193 (441)
T ss_pred             eeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEE
Confidence            599999 999999999999999999999999999999988764

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.85  E-value=1.5e-05  Score=74.39  Aligned_cols=32  Identities=25%  Similarity=0.404  Sum_probs=27.4

Q ss_pred             eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      +--.++.+.+|++++|.|+||+||||++++|.
T Consensus        19 ~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~   50 (202)
T cd03243          19 FVPNDINLGSGRLLLITGPNMGGKSTYLRSIG   50 (202)
T ss_pred             eEeeeEEEcCCeEEEEECCCCCccHHHHHHHH
Confidence            34445666689999999999999999999999

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>PRK09862 putative ATP-dependent protease; Provisional

Probab=97.84  E-value=1.4e-05  Score=84.05  Aligned_cols=53  Identities=26%  Similarity=0.436  Sum_probs=47.8

Q ss_pred             ecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          410 RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       410 ~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      .|+++.|+..               .|++++++.+..|+..+|.|+||+||||+++.|.|+++|.+|+
T Consensus       188 ~d~~~v~Gq~---------------~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~  240 (506)
T PRK09862        188 HDLSDVIGQE---------------QGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE  240 (506)
T ss_pred             cCeEEEECcH---------------HHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCc
Confidence            4788888432               5899999999999999999999999999999999999999986

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=97.81  E-value=1.5e-05  Score=82.57  Aligned_cols=41  Identities=24%  Similarity=0.411  Sum_probs=39.0

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      .|+|++ +.+.+||+.+|+|+||+||||++++|+|...|+.|
T Consensus       152 ~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~  192 (440)
T TIGR01026       152 RSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVN  192 (440)
T ss_pred             eeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEE
Confidence            699999 99999999999999999999999999999988865

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=97.81  E-value=1.4e-05  Score=82.64  Aligned_cols=42  Identities=21%  Similarity=0.309  Sum_probs=39.8

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      .|+|++ +.+.+||+.+|+|+||+||||++++|+|...|+.|.
T Consensus       134 ~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~v  175 (422)
T TIGR02546       134 RAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNV  175 (422)
T ss_pred             eeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEE
Confidence            599999 999999999999999999999999999999998764

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.81  E-value=1.1e-05  Score=76.73  Aligned_cols=32  Identities=28%  Similarity=0.418  Sum_probs=29.7

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       447 gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+.||.|+|||||||+.+.|+|.+++++|.+
T Consensus        33 ~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~   64 (229)
T PRK09270         33 RTIVGIAGPPGAGKSTLAEFLEALLQQDGELP   64 (229)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhhhccCCc
Confidence            47999999999999999999999999999863

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.79  E-value=8.4e-06  Score=88.85  Aligned_cols=41  Identities=29%  Similarity=0.434  Sum_probs=35.7

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      .+++.++.+.+|+|++|+||||+|||||+.+|++.+....|
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G  214 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREG  214 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcC
Confidence            46667777888999999999999999999999998866665

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=97.79  E-value=2.7e-05  Score=80.15  Aligned_cols=59  Identities=15%  Similarity=0.196  Sum_probs=49.6

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++..+.+++.|..+              ..|+|++ +.+.+||..+++|+||+||||++++|+|..+|+.|.+
T Consensus       129 ~~~~r~~i~~~l~TG--------------iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI  187 (432)
T PRK06793        129 HAFEREEITDVFETG--------------IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVI  187 (432)
T ss_pred             CchheechhhccCCC--------------CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEE
Confidence            456677788877532              2588886 9999999999999999999999999999999988743

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=97.78  E-value=2.4e-05  Score=80.12  Aligned_cols=51  Identities=18%  Similarity=0.402  Sum_probs=44.7

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      ..-|.+.+.+-.|+++               .-+++-+|++.+|.-.||.|+||+||||++++|.-
T Consensus        78 ~~Di~~~~fdLa~G~k---------------~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~  128 (582)
T KOG0062|consen   78 SKDIHIDNFDLAYGGK---------------ILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN  128 (582)
T ss_pred             ccceeeeeeeeeecch---------------hhhcCCceeeecccccceeCCCCCcHHHHHHHHHh
Confidence            3458888888899653               46999999999999999999999999999999975

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.77  E-value=3.5e-05  Score=56.90  Aligned_cols=34  Identities=24%  Similarity=0.536  Sum_probs=26.7

Q ss_pred             eeeeEEEEeC-CcEEEEECCCCCcHHHHHHHHhCC
Q 011717          437 IKGLWVNIAK-DQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       437 V~~lsl~v~~-gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .++-.+.+.+ |.++.+.|+||+||||++..+.=.
T Consensus        12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            4445667765 569999999999999999877543

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.77  E-value=1.9e-05  Score=74.56  Aligned_cols=43  Identities=16%  Similarity=0.159  Sum_probs=38.4

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC-CCCCCCcc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG-ITPVTGGD  477 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG-~~~pTsG~  477 (479)
                      ...+++++++.+|++.+|.|+||+||||++++++| .+.+..|.
T Consensus        19 ~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~   62 (222)
T cd03287          19 FVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGS   62 (222)
T ss_pred             EEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCC
Confidence            46899999999999999999999999999999999 56666663

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK05922 type III secretion system ATPase; Validated

Probab=97.76  E-value=2.8e-05  Score=79.94  Aligned_cols=42  Identities=21%  Similarity=0.304  Sum_probs=39.0

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      .|+|.+ +.+.+||..++.|+||+||||++++|+|..+++.|.
T Consensus       146 r~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~~d~gv  187 (434)
T PRK05922        146 KAIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSKSTINV  187 (434)
T ss_pred             eeecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCCCCceE
Confidence            488887 999999999999999999999999999999988774

>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI

Probab=97.76  E-value=3e-05  Score=79.71  Aligned_cols=42  Identities=26%  Similarity=0.363  Sum_probs=39.8

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      .|+|++ +.+.+||+.+|.|+||+||||++++|++...++.|.
T Consensus       126 ~~iD~l-~~i~~Gqri~I~G~sG~GKTtLl~~i~~~~~~~~gv  167 (413)
T TIGR03497       126 KAIDGL-LTIGKGQRVGIFAGSGVGKSTLLGMIARNAKADINV  167 (413)
T ss_pred             eeeeeE-EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEE
Confidence            599999 999999999999999999999999999999988774

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=97.75  E-value=2.4e-05  Score=80.43  Aligned_cols=42  Identities=21%  Similarity=0.288  Sum_probs=38.8

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      .|+| .++.+.+||+.+|+|+||+||||+++||+|..+|+.|.
T Consensus       129 ~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gv  170 (418)
T TIGR03498       129 RVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVV  170 (418)
T ss_pred             EEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEE
Confidence            4776 69999999999999999999999999999999998874

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=97.74  E-value=3.2e-05  Score=79.41  Aligned_cols=39  Identities=26%  Similarity=0.409  Sum_probs=36.1

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      .|+|.+ +.+.+||+.+++|+||+||||++++|+|...++
T Consensus       151 ~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d  189 (444)
T PRK08972        151 RAINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTTAD  189 (444)
T ss_pred             eeecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCCCC
Confidence            588888 999999999999999999999999999987664

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=97.71  E-value=7.2e-05  Score=79.30  Aligned_cols=61  Identities=21%  Similarity=0.371  Sum_probs=54.0

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..|.++||+-.=++.+              .-|++++++|++||-.-+.|+||+||||+++.|+|+-|--+|++
T Consensus       390 ~~~i~~~nl~l~~p~~~--------------~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I  450 (604)
T COG4178         390 DHGITLENLSLRTPDGQ--------------TLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI  450 (604)
T ss_pred             cceeEEeeeeEECCCCC--------------eeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCce
Confidence            46799999998876542              46999999999999999999999999999999999999888864

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=97.71  E-value=6.8e-05  Score=77.00  Aligned_cols=59  Identities=24%  Similarity=0.372  Sum_probs=48.9

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      .+|+++|+--.-++..              +.|.+++|.+.+|--.-++||||+|||++++||.|+-|.-.|.
T Consensus       480 ~gI~lenIpvItP~~~--------------vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~  538 (728)
T KOG0064|consen  480 NGIILENIPVITPAGD--------------VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGL  538 (728)
T ss_pred             cceEEecCceeccCcc--------------eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCe
Confidence            4577777655554321              5799999999999999999999999999999999999876663

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.71  E-value=1.8e-05  Score=77.62  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=28.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCCC--CCCccc
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGITP--VTGGDG  478 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~~--pTsG~a  478 (479)
                      .++|+.|+|||||||+.++|+|++.  |++|++
T Consensus        63 ~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V   95 (290)
T TIGR00554        63 YIISIAGSVAVGKSTTARILQALLSRWPEHRKV   95 (290)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHhhcCCCCce
Confidence            5999999999999999999999987  777764

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR03496 FliI_clade1 flagellar protein export ATPase FliI

Probab=97.71  E-value=3.7e-05  Score=78.95  Aligned_cols=41  Identities=24%  Similarity=0.412  Sum_probs=38.6

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      .|+|.+ +.+.+||+.+|+|+||+||||++++|+|...|+.|
T Consensus       126 ~~id~l-~~i~~Gq~~~I~G~sG~GKTtLl~~I~~~~~~~~~  166 (411)
T TIGR03496       126 RAINGL-LTVGRGQRMGIFAGSGVGKSTLLGMMARYTEADVV  166 (411)
T ss_pred             Eeecce-EEEecCcEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence            589999 99999999999999999999999999999988754

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.70  E-value=5.7e-05  Score=68.92  Aligned_cols=55  Identities=20%  Similarity=0.408  Sum_probs=46.8

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      +-|+||+-.+..+.           ..++|||++|+++.+|||-||+|..|+|||-.-+.|+|..+
T Consensus         4 LDIrnL~IE~~Tsq-----------G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~k   58 (330)
T COG4170           4 LDIRNLTIEFKTSQ-----------GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNK   58 (330)
T ss_pred             ccccceEEEEecCC-----------CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccc
Confidence            45778887775542           24579999999999999999999999999999999999764

>PRK06315 type III secretion system ATPase; Provisional

Probab=97.66  E-value=3e-05  Score=80.01  Aligned_cols=41  Identities=17%  Similarity=0.379  Sum_probs=37.5

Q ss_pred             cceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717          434 YHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (479)
Q Consensus       434 ~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs  475 (479)
                      +.|||++ +.+.+||+.+++|.||+||||++++|+|..++++
T Consensus       152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~  192 (442)
T PRK06315        152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEAD  192 (442)
T ss_pred             EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCC
Confidence            3699998 9999999999999999999999999999886544

>PRK07960 fliI flagellum-specific ATP synthase; Validated

Probab=97.61  E-value=4.4e-05  Score=78.61  Aligned_cols=40  Identities=23%  Similarity=0.390  Sum_probs=37.1

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs  475 (479)
                      .|+|.+ +.+.+||+.+|+|+||+||||++++|+|+..|+.
T Consensus       164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~  203 (455)
T PRK07960        164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADV  203 (455)
T ss_pred             eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCE
Confidence            578887 9999999999999999999999999999998874

>PRK08472 fliI flagellum-specific ATP synthase; Validated

Probab=97.60  E-value=3.8e-05  Score=79.08  Aligned_cols=41  Identities=22%  Similarity=0.304  Sum_probs=37.4

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      .|+|++ +.+.+||+.+|+|+||+||||++++|++...++.+
T Consensus       146 ~aid~l-~~i~~Gq~~~i~G~sG~GKStLl~~i~~~~~~~v~  186 (434)
T PRK08472        146 KSIDGL-LTCGKGQKLGIFAGSGVGKSTLMGMIVKGCLAPIK  186 (434)
T ss_pred             HHhhhc-ceecCCCEEEEECCCCCCHHHHHHHHhhccCCCEE
Confidence            589999 99999999999999999999999999998766544

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.59  E-value=2.9e-05  Score=77.40  Aligned_cols=34  Identities=35%  Similarity=0.393  Sum_probs=30.6

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+|++++++|+||+|||||+..|++.+.+.+|++
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V  145 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKV  145 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeE
Confidence            5689999999999999999999999988877664

>PRK06936 type III secretion system ATPase; Provisional

Probab=97.59  E-value=8.1e-05  Score=76.63  Aligned_cols=39  Identities=26%  Similarity=0.445  Sum_probs=37.0

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      .++|++ +.+.+||+.+++|+||+||||+++||++...++
T Consensus       151 ~vid~l-~~i~~Gq~~~I~G~sG~GKStLl~~Ia~~~~~d  189 (439)
T PRK06936        151 RVIDGL-LTCGEGQRMGIFAAAGGGKSTLLASLIRSAEVD  189 (439)
T ss_pred             ceeeee-EEecCCCEEEEECCCCCChHHHHHHHhcCCCCC
Confidence            589999 999999999999999999999999999988765

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.58  E-value=5.1e-05  Score=74.76  Aligned_cols=41  Identities=24%  Similarity=0.332  Sum_probs=33.4

Q ss_pred             eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++.|...+. +++++++|+||+||||++|.|.|...++.|++
T Consensus       152 i~~L~~~L~-~k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v  192 (287)
T cd01854         152 LDELREYLK-GKTSVLVGQSGVGKSTLINALLPDLDLATGEI  192 (287)
T ss_pred             HHHHHhhhc-cceEEEECCCCCCHHHHHHHHhchhhccccce
Confidence            344444444 58999999999999999999999998888864

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.57  E-value=5.7e-05  Score=73.44  Aligned_cols=31  Identities=23%  Similarity=0.161  Sum_probs=29.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +-++++|+||+||||++++|+|+++|++|++
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i  142 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQL  142 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCceE
Confidence            6789999999999999999999999999975

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=97.56  E-value=6.5e-05  Score=70.84  Aligned_cols=34  Identities=24%  Similarity=0.308  Sum_probs=31.4

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      ...++++++..+ ++.+|.|+||+||||+++++.+
T Consensus        19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~   52 (216)
T cd03284          19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVAL   52 (216)
T ss_pred             eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHH
Confidence            479999999987 9999999999999999999964

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PRK06820 type III secretion system ATPase; Validated

Probab=97.52  E-value=9.6e-05  Score=76.25  Aligned_cols=40  Identities=23%  Similarity=0.380  Sum_probs=38.1

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs  475 (479)
                      .|+|++ +.+.+||..+|+|+||+||||++++|++...|+.
T Consensus       152 ~aID~l-~~i~~Gqri~I~G~sG~GKStLl~~I~~~~~~dv  191 (440)
T PRK06820        152 RAIDGI-LSCGEGQRIGIFAAAGVGKSTLLGMLCADSAADV  191 (440)
T ss_pred             ceecce-EEecCCCEEEEECCCCCChHHHHHHHhccCCCCE
Confidence            699999 9999999999999999999999999999988775

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.50  E-value=5.7e-05  Score=77.61  Aligned_cols=27  Identities=41%  Similarity=0.715  Sum_probs=25.0

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      +.+|++++|+|+||+|||||+..|+|.
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999999985

>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family

Probab=97.48  E-value=0.053  Score=51.51  Aligned_cols=142  Identities=13%  Similarity=0.097  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHH
Q 011717          131 VFQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMT  210 (479)
Q Consensus       131 ~~~v~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i  210 (479)
                      ...-..++.|||++.-+.++.+.++...|-++..+...+..++.+++..+++.+++.+.  ..+....++..+++.....
T Consensus        53 ~~~~~~i~~er~~G~l~rl~~~P~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~  130 (232)
T TIGR00025        53 TGQAIAVARDRRYGALKRLGATPLPRLGILAGRSLAVVARVFLQTLILLVIGFVLGFRF--AGGALTALTLGAVIIALGT  130 (232)
T ss_pred             HHHHHHHHHHHHhCHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CCchHHHHHHHHHHHHHHH
Confidence            33345688999999999999999999999999987776666555444444444444332  1222222333334444445


Q ss_pred             HHHHHHHHhcCCchhh---hHHHHHHHHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHHH
Q 011717          211 GFAFMFSAFISKSSSS---TTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLS  278 (479)
Q Consensus       211 ~~~~~~S~fF~~~~~a---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~  278 (479)
                      .++.+++.+....+.+   ..+..+..+   ....+.-..+|. +..+..++.+..+.|......++....
T Consensus       131 ~~~~~i~~~~~~~~~~~~~~~i~~~~~~---p~~~lSG~~~P~-~~mP~~lq~i~~~~P~t~~~~~~r~~~  197 (232)
T TIGR00025       131 ALFAALGLVAGGTLQAEIVLAVANLVWF---IFALLSAGLVPL-NLIPTWIKWFVRVQPSSYATEALRQAA  197 (232)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHH---HHHHHhheeeec-ccccHHHHHHHHhCcHHHHHHHHHHHH
Confidence            5566677666544333   222111111   111111111232 335677888888899877777766553

This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=97.43  E-value=0.00015  Score=72.76  Aligned_cols=61  Identities=21%  Similarity=0.273  Sum_probs=54.8

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ...+...+++..|...              .+-++++||+++.|+.+++.|+.||||||..+.|-..+.+++|.+
T Consensus       260 ~g~v~F~~V~F~y~~~--------------r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I  320 (497)
T COG5265         260 LGAVAFINVSFAYDPR--------------RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSI  320 (497)
T ss_pred             cceEEEEEEEeecccc--------------chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceE
Confidence            3458889999999643              257999999999999999999999999999999999999999976

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.42  E-value=7.7e-05  Score=75.52  Aligned_cols=37  Identities=30%  Similarity=0.459  Sum_probs=33.3

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .++++.++.+.+|++++|+||||+|||||+..|++..
T Consensus       125 ~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        125 PVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             hhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4677888889999999999999999999999999754

>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein

Probab=97.41  E-value=0.057  Score=51.33  Aligned_cols=136  Identities=9%  Similarity=0.159  Sum_probs=82.7

Q ss_pred             HHHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHH
Q 011717          134 ISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFA  213 (479)
Q Consensus       134 v~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~  213 (479)
                      ...++.|||++.-+-+.....+...|+++..+...+..++..+++.++...+..  .........+++.++++++...++
T Consensus        67 ~~~~~~~~~~g~~~~~~~~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~--~~~~~~~~~~~~~~l~~~~~~~lg  144 (236)
T TIGR01247        67 GISVIWDRQFGFLKEILVAPASRVEMIVGRILGGSTVAMIQGAIILALSFIVAI--LKPSGVIPTLVLAFIVGVALSGLG  144 (236)
T ss_pred             hhHHHHHHHhCHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHHHHHH
Confidence            345678999887777778899999999999999888877765554444333211  111233334445556778889999


Q ss_pred             HHHHHhcCCchhhhHHH-HHHHHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHH
Q 011717          214 FMFSAFISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQL  276 (479)
Q Consensus       214 ~~~S~fF~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~  276 (479)
                      ++++.++++.+.+..+. .+.....++..    ..+|. +..+..++.+..+.|......++..
T Consensus       145 ~~l~~~~~~~~~~~~i~~~~~~~l~~lsG----~~~P~-~~~P~~~~~i~~~~P~~~~~~~~r~  203 (236)
T TIGR01247       145 VAIAARMDSMEGFQIIMSMLMLPMFFLSG----AFYPI-TTMPAWMQGLAKINPLTYAVDGARY  203 (236)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHH----hhcCH-HhCHHHHHHHHHHCcHHHHHHHHHH
Confidence            99999888876544332 22111111111    11222 2245566777778887665555544

This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK00098 GTPase RsgA; Reviewed

Probab=97.37  E-value=0.00016  Score=71.62  Aligned_cols=33  Identities=24%  Similarity=0.378  Sum_probs=30.3

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +|++++|+|+||+||||++|.|.|...+..|++
T Consensus       163 ~gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v  195 (298)
T PRK00098        163 AGKVTVLAGQSGVGKSTLLNALAPDLELKTGEI  195 (298)
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcCCCCcce
Confidence            589999999999999999999999988887764

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=97.34  E-value=0.00029  Score=66.72  Aligned_cols=34  Identities=24%  Similarity=0.351  Sum_probs=31.7

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      ...+|++++..++++++|.||||+||||+++++.
T Consensus        18 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~   51 (222)
T cd03285          18 FIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIG   51 (222)
T ss_pred             eEEeeEEEeecCCeEEEEECCCCCChHHHHHHHH
Confidence            4699999999999999999999999999999963

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=97.32  E-value=0.0001  Score=73.37  Aligned_cols=38  Identities=29%  Similarity=0.344  Sum_probs=35.2

Q ss_pred             eEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       440 lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      |++.+..|+.+++.|+||+||||+++.|+|++++..|.
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~i  174 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERI  174 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccE
Confidence            66788999999999999999999999999999998774

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.32  E-value=0.0002  Score=66.62  Aligned_cols=29  Identities=31%  Similarity=0.590  Sum_probs=25.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHh--------CCCCCCCc
Q 011717          448 QLFCLLGPNGAGKTTTISCLT--------GITPVTGG  476 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLt--------G~~~pTsG  476 (479)
                      ++.+|.||||+||||++++|.        |...|...
T Consensus        29 ~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~   65 (200)
T cd03280          29 RVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE   65 (200)
T ss_pred             eEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc
Confidence            589999999999999999999        87766554

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=97.29  E-value=0.00019  Score=80.81  Aligned_cols=30  Identities=33%  Similarity=0.601  Sum_probs=29.2

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHH
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTIS  465 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~  465 (479)
                      .++|+++++++||++|+.|+|||||||+++
T Consensus       622 ~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~  651 (924)
T TIGR00630       622 NLKNITVSIPLGLFTCITGVSGSGKSTLIN  651 (924)
T ss_pred             CcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence            699999999999999999999999999998

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.29  E-value=0.00024  Score=84.19  Aligned_cols=38  Identities=21%  Similarity=0.309  Sum_probs=34.4

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHH---------HHhCCCCC
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTIS---------CLTGITPV  473 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~---------mLtG~~~p  473 (479)
                      .++++|++|++||++|+.|+|||||||+++         .|.|...+
T Consensus       610 ~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~  656 (1809)
T PRK00635        610 NLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCS  656 (1809)
T ss_pred             CccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcc
Confidence            699999999999999999999999999999         77776543

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=97.26  E-value=0.00091  Score=68.63  Aligned_cols=62  Identities=15%  Similarity=0.288  Sum_probs=54.3

Q ss_pred             CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ....+++++|+-.-..              ...+|+++||+|.+|||+|+-|.-|-|-+-++..|+|+.+|.+|++
T Consensus       254 g~~vL~V~~L~v~~~~--------------~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I  315 (501)
T COG3845         254 GEVVLEVEDLSVKDRR--------------GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRI  315 (501)
T ss_pred             CCeEEEEeeeEeecCC--------------CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceE
Confidence            3678999999865422              2369999999999999999999999999999999999999888976

>TIGR00606 rad50 rad50

Probab=97.21  E-value=0.00027  Score=83.62  Aligned_cols=32  Identities=56%  Similarity=0.855  Sum_probs=28.0

Q ss_pred             CcEEEEECCCCCcHHHHHHHH----hCCCCCC-Cccc
Q 011717          447 DQLFCLLGPNGAGKTTTISCL----TGITPVT-GGDG  478 (479)
Q Consensus       447 gei~~LLG~NGAGKTTt~~mL----tG~~~pT-sG~a  478 (479)
                      ..+++++|||||||||++.+|    +|..+|. +|.+
T Consensus        28 ~~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~   64 (1311)
T TIGR00606        28 SPLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNT   64 (1311)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCce
Confidence            359999999999999999999    6999996 6664

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK01889 GTPase RsgA; Reviewed

Probab=97.19  E-value=0.00023  Score=72.32  Aligned_cols=43  Identities=26%  Similarity=0.357  Sum_probs=38.0

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++.|.-.+.+|++.+++|++|+||||+++.|+|...++.|++
T Consensus       184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i  226 (356)
T PRK01889        184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAV  226 (356)
T ss_pred             cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeE
Confidence            3566666678999999999999999999999999999999875

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=97.17  E-value=0.00048  Score=64.88  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=33.6

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ..-||++|+..+|++.+|.|+||+||||+++++++.
T Consensus        18 ~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~   53 (218)
T cd03286          18 FVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLA   53 (218)
T ss_pred             eEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHH
Confidence            468999999999999999999999999999999864

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00767 rho transcription termination factor Rho

Probab=97.13  E-value=0.00096  Score=67.74  Aligned_cols=55  Identities=24%  Similarity=0.346  Sum_probs=46.6

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceee-----------eeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIK-----------GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~-----------~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      ...+..++|+..|++.+              .++.           |+.+.+.+||..+++|+.|+||||++++|...+.
T Consensus       128 ~~ri~Fe~LTf~YP~er--------------~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       128 KNRVLFENLTPLYPNER--------------LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CCCeEEEEeeecCCCcc--------------ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence            34699999999997542              2453           9999999999999999999999999999988654

Members of this family differ in the specificity of RNA binding.

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=97.12  E-value=0.0004  Score=78.46  Aligned_cols=32  Identities=31%  Similarity=0.512  Sum_probs=30.7

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHH
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL  467 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mL  467 (479)
                      .++|+|++|++||++|+.|+||+||||+++.+
T Consensus       624 ~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~  655 (943)
T PRK00349        624 NLKNVDVEIPLGKFTCVTGVSGSGKSTLINET  655 (943)
T ss_pred             CcCceEEEEeCCCEEEEEcCCCCCHHHHHHHH
Confidence            69999999999999999999999999999976

>TIGR01291 nodJ ABC-2 type transporter, NodJ family

Probab=97.10  E-value=0.2  Score=48.27  Aligned_cols=136  Identities=12%  Similarity=0.149  Sum_probs=87.8

Q ss_pred             HHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q 011717          136 SLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFM  215 (479)
Q Consensus       136 ~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~  215 (479)
                      .+.+|||+|.-+.+..+-++...+-++..++..+..++..+++.++...+...  ...+...++..+++++++...++++
T Consensus        81 ~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~g~~--~~~~~l~~~~~~ll~~l~~~~lg~~  158 (253)
T TIGR01291        81 TFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATLGYI--EWWSLIYILPVIALTGLAFASLSML  158 (253)
T ss_pred             HHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999999999999988777777655444444343321  2223444445567788888899999


Q ss_pred             HHHhcCCchhhhHHH-HHHHHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHHH
Q 011717          216 FSAFISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLS  278 (479)
Q Consensus       216 ~S~fF~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~  278 (479)
                      ++...++.+.+..+. .+...+.++...    .+|. +..+..++.+..+.|......++....
T Consensus       159 ~a~~~~~~~~~~~i~~~i~~pl~flSg~----~~P~-~~mP~~lq~i~~~nPlt~~v~~~R~~~  217 (253)
T TIGR01291       159 VAALAPSYAYFAFYQSLVITPMLFLSGV----VFPV-FQLNDVIQGMTHFLPLAHSIDDIRPVM  217 (253)
T ss_pred             HHHHhccHHHHHHHHHHHHHHHHHHHHH----hcCH-HhChHHHHHHHHHCcHHHHHHHHHHHH
Confidence            999887766544332 221111111111    1221 234556777778889887777776653

Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.

>TIGR00368 Mg chelatase-related protein

Probab=97.09  E-value=0.00026  Score=74.80  Aligned_cols=44  Identities=36%  Similarity=0.508  Sum_probs=41.3

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .|++++++.+..|+.+.|+|+||+||||+.++|.|+++|.+|+.
T Consensus       199 ~~~~al~~aa~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~  242 (499)
T TIGR00368       199 HAKRALEIAAAGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEE  242 (499)
T ss_pred             HHHhhhhhhccCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcE
Confidence            58999999999999999999999999999999999999998863

The N-terminal end matches very strongly a pfam Mg_chelatase domain.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=97.09  E-value=0.00073  Score=68.00  Aligned_cols=42  Identities=31%  Similarity=0.490  Sum_probs=37.0

Q ss_pred             eeeeeEEEEeCC-----cEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          436 AIKGLWVNIAKD-----QLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       436 AV~~lsl~v~~g-----ei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      -+-+..|.|..|     |+..+||.||-||||.++||+|.++|+.|.
T Consensus       351 ~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~  397 (592)
T KOG0063|consen  351 TVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGG  397 (592)
T ss_pred             eeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccC
Confidence            466777888776     689999999999999999999999999884

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=97.02  E-value=0.00047  Score=81.78  Aligned_cols=33  Identities=21%  Similarity=0.481  Sum_probs=30.0

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHH
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL  467 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mL  467 (479)
                      +.++|++|++++||++||.|+||+||||++..+
T Consensus       949 ~~lk~isl~i~~gei~~itG~nGsGKStL~~~~  981 (1809)
T PRK00635        949 HNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI  981 (1809)
T ss_pred             ccccceeEEecCCcEEEEECCCCCChhHHHHHH
Confidence            469999999999999999999999999966655

>PLN02796 D-glycerate 3-kinase

Probab=97.00  E-value=0.00016  Score=72.01  Aligned_cols=39  Identities=23%  Similarity=0.228  Sum_probs=31.8

Q ss_pred             eeeeeEEEE---eCCcE-----EEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          436 AIKGLWVNI---AKDQL-----FCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       436 AV~~lsl~v---~~gei-----~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      ++++++..+   .+|+.     +|+.|++|+||||+.+.|.+++++.
T Consensus        81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~  127 (347)
T PLN02796         81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNAT  127 (347)
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhccc
Confidence            455666665   45565     9999999999999999999999875

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=96.98  E-value=0.00076  Score=60.08  Aligned_cols=31  Identities=32%  Similarity=0.454  Sum_probs=24.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      +|++.+|+|+.|+||||++|.|.|......|
T Consensus        34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~   64 (161)
T PF03193_consen   34 KGKTSVLLGQSGVGKSSLINALLPEAKQKTG   64 (161)
T ss_dssp             TTSEEEEECSTTSSHHHHHHHHHTSS----S
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhhcchhhh
Confidence            4589999999999999999999997544434

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=96.97  E-value=0.0012  Score=68.83  Aligned_cols=43  Identities=21%  Similarity=0.433  Sum_probs=41.4

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++|+||++++|||+||-|-=|||+|-+...|-|..++++|++
T Consensus       274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i  316 (500)
T COG1129         274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEI  316 (500)
T ss_pred             ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceE
Confidence            4999999999999999999999999999999999999999986

>PRK08927 fliI flagellum-specific ATP synthase; Validated

Probab=96.95  E-value=0.00094  Score=68.93  Aligned_cols=39  Identities=15%  Similarity=0.258  Sum_probs=35.3

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      .+=|.-+.+.+||..+++|+||+||||++++|++...|+
T Consensus       147 r~ID~l~~i~~Gqri~I~G~sG~GKTtLL~~I~~~~~~d  185 (442)
T PRK08927        147 RALNTFLTCCRGQRMGIFAGSGVGKSVLLSMLARNADAD  185 (442)
T ss_pred             EEEeeeeEEcCCCEEEEECCCCCCHHHHHHHHHhccCCC
Confidence            455677999999999999999999999999999988775

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.88  E-value=0.00072  Score=65.97  Aligned_cols=33  Identities=21%  Similarity=0.125  Sum_probs=27.5

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      +.+.+++|+|+|||||||+++.|.+.+....+.
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~  134 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPC  134 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCE
Confidence            356899999999999999999999877665443

>TIGR01248 drrC daunorubicin resistance protein C

Probab=96.84  E-value=0.12  Score=45.83  Aligned_cols=135  Identities=16%  Similarity=0.191  Sum_probs=78.5

Q ss_pred             HHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q 011717          136 SLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFM  215 (479)
Q Consensus       136 ~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~  215 (479)
                      .++.|||++.-+.++.+-++...+.++..+.+.+..++.++++++++..++.+.-  .++...+..+.+..+..++++.+
T Consensus        11 ~i~~dr~~G~~~~l~~tP~~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~g~~~~--~~~~~~~~~~~~~~l~~~~f~~l   88 (152)
T TIGR01248        11 DITIDREIGLLSRLWVLPIHRASALLARIIAETIRAFIGTILILAIALALGFRFR--NGVAAALLFLLIPSIFGIAFAAL   88 (152)
T ss_pred             HHHHHHHhHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999988887777766655554432  23332333333333333444444


Q ss_pred             HHHh--cCCchhhhHHHHHH-HHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHH
Q 011717          216 FSAF--ISKSSSSTTIGFSV-FIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLL  277 (479)
Q Consensus       216 ~S~f--F~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i  277 (479)
                      .+.+  ..+...+.....++ +...++..    ..+|. +..+..++.+..+.|-.....++..+
T Consensus        89 ~~~~a~~~~~~~~~~~~~~v~~pl~flsg----~~~P~-~~mP~wlq~ia~~~Plt~~~~~~R~~  148 (152)
T TIGR01248        89 VMAMALRKEGRFAMEALELAQAAAAFLNP----GATPI-KLFPDWAQPLIAHQPISPAIEACADL  148 (152)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhh----hhcCH-HhCcHHHHHHHhhCCccHHHHHHHHH
Confidence            4332  23433332221111 11111111    11222 23556777777788876666665543

The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.

>TIGR00750 lao LAO/AO transport system ATPase

Probab=96.78  E-value=0.00044  Score=68.62  Aligned_cols=38  Identities=18%  Similarity=0.223  Sum_probs=34.5

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      ..+++++....+++++++.|++|+||||+++.|.+...
T Consensus        22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~~   59 (300)
T TIGR00750        22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMELR   59 (300)
T ss_pred             HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            47899999999999999999999999999999988653

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>TIGR01069 mutS2 MutS2 family protein

Probab=96.72  E-value=0.00057  Score=76.01  Aligned_cols=38  Identities=26%  Similarity=0.448  Sum_probs=31.7

Q ss_pred             eeEEEEeCC-cEEEEECCCCCcHHHHHHHHhCC-CCCCCc
Q 011717          439 GLWVNIAKD-QLFCLLGPNGAGKTTTISCLTGI-TPVTGG  476 (479)
Q Consensus       439 ~lsl~v~~g-ei~~LLG~NGAGKTTt~~mLtG~-~~pTsG  476 (479)
                      -+++.+.++ ++.+|.||||+||||++++++|. +.+..|
T Consensus       313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G  352 (771)
T TIGR01069       313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG  352 (771)
T ss_pred             eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC
Confidence            467778777 99999999999999999999997 444444

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=96.65  E-value=0.0016  Score=61.18  Aligned_cols=32  Identities=16%  Similarity=0.296  Sum_probs=24.9

Q ss_pred             eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      =+|++++=..+.+..|.|+||+||||+++.+.
T Consensus        19 pnd~~l~~~~~~~~~itGpNg~GKStlLk~i~   50 (213)
T cd03281          19 PNDTEIGGGGPSIMVITGPNSSGKSVYLKQVA   50 (213)
T ss_pred             cceEEecCCCceEEEEECCCCCChHHHHHHHH
Confidence            35555542223799999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=96.64  E-value=0.0013  Score=67.70  Aligned_cols=63  Identities=22%  Similarity=0.210  Sum_probs=54.4

Q ss_pred             CCceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          403 PNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       403 ~~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+.+++.++++.|..+.            . .-..+++++++-..-.+..|+||+||||+++++.|+..|++|.+
T Consensus       359 ~~p~l~i~~V~f~y~p~~------------y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~  421 (582)
T KOG0062|consen  359 SPPNLRISYVAFEYTPSE------------Y-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIV  421 (582)
T ss_pred             CCCeeEEEeeeccCCCcc------------h-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCccccee
Confidence            357899999999996542            1 35788999999999999999999999999999999999999964

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.59  E-value=0.0017  Score=63.13  Aligned_cols=37  Identities=27%  Similarity=0.413  Sum_probs=30.3

Q ss_pred             eeeeeEEEEe-------CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          436 AIKGLWVNIA-------KDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       436 AV~~lsl~v~-------~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      .++++++.+.       +|++++++|+||+||||++.+|++.+.
T Consensus        57 v~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~  100 (270)
T PRK06731         57 ILEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFH  100 (270)
T ss_pred             HhcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            4666666665       569999999999999999999998653

>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein

Probab=96.55  E-value=0.79  Score=44.02  Aligned_cols=138  Identities=15%  Similarity=0.177  Sum_probs=84.9

Q ss_pred             HHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHH
Q 011717          135 SSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAF  214 (479)
Q Consensus       135 ~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~  214 (479)
                      ..++.|||++.-+.++.+-++...+-++..+...+..++..+++++++..+.... ...+....+..+++..+....+++
T Consensus        80 ~~~~~~r~~g~~~~l~~~p~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~g~~~-~~~~~l~~~~~~~l~~~~~~~lgl  158 (253)
T TIGR03861        80 LSMVYDREMGSMRVLLTSPLPRPFLLFCKLLASALISLLQVYAFLAIAALVGVQP-PVWGYVSVLPALVLVAFMLGALGL  158 (253)
T ss_pred             hHhHHhHhcCHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHHHHHHH
Confidence            3568999999989999999999999999999988888887655554444443221 111233333444556677778899


Q ss_pred             HHHHhcCCchhhhHHH-HHHHHHHHHHHHHHhhccccC--cccchhhhhhheecChHHHHHHHHHH
Q 011717          215 MFSAFISKSSSSTTIG-FSVFIVGFLTQLVTAFGFPYS--DQFSNTYRTIWSLFPPNLLAEALQLL  277 (479)
Q Consensus       215 ~~S~fF~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~P~~~~~~~~~~i  277 (479)
                      ++|.+.++.+.+..+. .+.....++..++    ++.+  ++.+..++++..+.|......++...
T Consensus       159 ~la~l~~~~~~~~~i~~~~~~~l~flSgi~----~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~  220 (253)
T TIGR03861       159 ALSNLIRQLENFAGVMNFVIFPMFFLSSAL----YPLWKMQEASTWLYWICALNPFTHAVELVRFA  220 (253)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHhhHh----hhhhhcccccHHHHHHHHhCcHHHHHHHHHHH
Confidence            9999987765544322 2222111111111    1111  12244566677788988777776654

Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.

>TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF

Probab=96.48  E-value=0.14  Score=48.99  Aligned_cols=99  Identities=15%  Similarity=0.077  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHH---HHHhhcccccccCch---HHHHHHHHHHH
Q 011717          133 QISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVI---FGMMFQFDFFLNNSF---AVLFLLFFLFE  206 (479)
Q Consensus       133 ~v~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii---~~~~~~~~~f~~~~~---~~l~ll~~l~g  206 (479)
                      ....+.+|||+|--|.+....++...+.++-++-..+..++..+..++   ....+.... .+-+.   ....+..++++
T Consensus        69 ~~~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~  147 (240)
T TIGR03518        69 TMRSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPV-GNLDIGSTFGSYIGLLLLG  147 (240)
T ss_pred             HHHHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc-ccccHHHHHHHHHHHHHHH
Confidence            345678999999999999999999999999998876655544322111   111121111 11122   22344456788


Q ss_pred             HHHHHHHHHHHHhcCCchhhhHHHHH
Q 011717          207 LNMTGFAFMFSAFISKSSSSTTIGFS  232 (479)
Q Consensus       207 ~s~i~~~~~~S~fF~~~~~a~~~~~~  232 (479)
                      .+.+..+.++|++.++...|...++.
T Consensus       148 ~~~~aig~~iSsl~~~q~~a~~~~~~  173 (240)
T TIGR03518       148 SVYTAIGLFASSLTENQIVAFIIAVF  173 (240)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            88999999999997766666544443

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=96.39  E-value=0.0024  Score=64.45  Aligned_cols=33  Identities=33%  Similarity=0.514  Sum_probs=30.7

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      .+||+.||+|-||-||||.+++|+|-.+|.-|.
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~kpnlg~  130 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGR  130 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCCCCCCC
Confidence            479999999999999999999999999998774

>PRK15494 era GTPase Era; Provisional

Probab=96.36  E-value=0.003  Score=63.79  Aligned_cols=37  Identities=19%  Similarity=0.383  Sum_probs=34.4

Q ss_pred             ceeeeeEEEEeCCc-------EEEEECCCCCcHHHHHHHHhCCC
Q 011717          435 HAIKGLWVNIAKDQ-------LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       435 ~AV~~lsl~v~~ge-------i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .+.+.+++.++.|+       .++++|+.|+||||+++.|+|..
T Consensus        33 ~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k   76 (339)
T PRK15494         33 GSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK   76 (339)
T ss_pred             ccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence            48999999999999       99999999999999999999953

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=96.31  E-value=0.0025  Score=64.59  Aligned_cols=30  Identities=17%  Similarity=0.393  Sum_probs=26.8

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      ++|..+.+.|+||+|||||++.|.+.+.++
T Consensus       132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~  161 (358)
T TIGR02524       132 PQEGIVFITGATGSGKSTLLAAIIRELAEA  161 (358)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            588999999999999999999999987543

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=96.29  E-value=0.00092  Score=64.96  Aligned_cols=39  Identities=28%  Similarity=0.292  Sum_probs=33.6

Q ss_pred             ceeeeeEEEEeCCc-EEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          435 HAIKGLWVNIAKDQ-LFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       435 ~AV~~lsl~v~~ge-i~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      .|++.+...+.+++ +..|.|+||+||||+++-+...+++
T Consensus        30 ~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~~   69 (269)
T TIGR03015        30 RAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQ   69 (269)
T ss_pred             HHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence            47888888887766 8999999999999999999987764

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PLN03211 ABC transporter G-25; Provisional

Probab=96.29  E-value=0.59  Score=51.59  Aligned_cols=95  Identities=14%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhHHHHHHHhCc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--CchHHHHHHHHHHHHHHHH
Q 011717          135 SSLVTEKELKLRQVMTMMGL-YDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLN--NSFAVLFLLFFLFELNMTG  211 (479)
Q Consensus       135 ~~iV~EKe~klke~m~~mGl-~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~--~~~~~l~ll~~l~g~s~i~  211 (479)
                      .....||.-=.||.  .+|. +..+|++|..+.++...++.+++..++.+..  ..+..  ..+...++.+++..++..+
T Consensus       459 ~~f~~er~v~~rE~--~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m--~Gl~~~~~~F~~f~li~~l~~~~~~s  534 (659)
T PLN03211        459 FVFPQERAIFVKER--ASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWM--AGLKPELGAFLLTLLVLLGYVLVSQG  534 (659)
T ss_pred             HHHHHhhHHHHHhh--hCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEc--CCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence            33567888777776  5565 6799999999999888777766554433221  11111  2344445567788889999


Q ss_pred             HHHHHHHhcCCchhhhHHHHHH
Q 011717          212 FAFMFSAFISKSSSSTTIGFSV  233 (479)
Q Consensus       212 ~~~~~S~fF~~~~~a~~~~~~~  233 (479)
                      +++++++++.+...|..++.++
T Consensus       535 ~g~~i~a~~~~~~~a~~~~~~~  556 (659)
T PLN03211        535 LGLALGAAIMDAKKASTIVTVT  556 (659)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999888887665443

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.28  E-value=0.0036  Score=54.01  Aligned_cols=29  Identities=31%  Similarity=0.261  Sum_probs=25.4

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      +++|+++.|.|..||||||+.+.+...+.
T Consensus        19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            36789999999999999999999987654

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=96.27  E-value=0.0028  Score=62.28  Aligned_cols=29  Identities=34%  Similarity=0.575  Sum_probs=25.3

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      .+|++++++||+|+|||||+..|++.+..
T Consensus       192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~  220 (282)
T TIGR03499       192 EQGGVIALVGPTGVGKTTTLAKLAARFVL  220 (282)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            46889999999999999999999876543

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.07  E-value=0.004  Score=65.45  Aligned_cols=28  Identities=43%  Similarity=0.667  Sum_probs=25.1

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      +++|++++|+|++|+|||||+..|++.+
T Consensus       347 l~~G~vIaLVGPtGvGKTTtaakLAa~l  374 (559)
T PRK12727        347 LERGGVIALVGPTGAGKTTTIAKLAQRF  374 (559)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999999998743

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=96.04  E-value=0.0052  Score=59.05  Aligned_cols=31  Identities=23%  Similarity=0.385  Sum_probs=25.9

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       447 gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      +++.+++|++|+||||++|.|.|......|+
T Consensus       120 ~~~~~~~G~sgvGKStLiN~L~~~~~~~t~~  150 (245)
T TIGR00157       120 NRISVFAGQSGVGKSSLINALDPSVKQQVND  150 (245)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhhhhccccc
Confidence            4799999999999999999999976554443

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]

Probab=96.01  E-value=1.2  Score=42.61  Aligned_cols=136  Identities=18%  Similarity=0.246  Sum_probs=73.1

Q ss_pred             HHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHH-HHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q 011717          137 LVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLS-SLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFM  215 (479)
Q Consensus       137 iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~-~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~  215 (479)
                      +..||+.+..+.+..+.++...+.++..+...+...+. .+++++...+++  .-...+...+.....++.+..+.++.+
T Consensus       111 ~~~~~~~g~~~~~~~sp~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~lg~~  188 (286)
T COG0842         111 LFREREFGTLERLLVSPVSRLFILLGKIVPYLVVASLIAGLVLLVIAFLLG--VPFLGSLLLLLLLLLLLLLATVALGLL  188 (286)
T ss_pred             HHhHHhhCcHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            44579999999999999997666666666555554444 333334444444  112334555566666677777777776


Q ss_pred             HHH-hcCCchhhhHHHHHH-HHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHHHH
Q 011717          216 FSA-FISKSSSSTTIGFSV-FIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLLSD  279 (479)
Q Consensus       216 ~S~-fF~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i~~  279 (479)
                      ++. ..++.+.+...+..+ ....++..    ..+|. ...+...+.+..+.|......++.....
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~l~g----~~~p~-~~~p~~~~~i~~~~P~t~~~~~~~~~~~  249 (286)
T COG0842         189 LSTFAKSQLQCASAVGNLLILPLGFLSG----VFFPL-ELLPAWLQGISYINPLTYAIDALRYVYL  249 (286)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHcc----ccCch-hhhHHHHHHHHHHccHHHHHHHHHHHHh
Confidence            662 334344443333222 21211111    11121 1223345566667787555555554443

>PLN02165 adenylate isopentenyltransferase

Probab=95.99  E-value=0.0054  Score=61.02  Aligned_cols=27  Identities=30%  Similarity=0.523  Sum_probs=24.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      +|++++|+|+|||||||+...|++.+.
T Consensus        42 ~g~iivIiGPTGSGKStLA~~LA~~l~   68 (334)
T PLN02165         42 KDKVVVIMGATGSGKSRLSVDLATRFP   68 (334)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence            467999999999999999999999865

>PLN02318 phosphoribulokinase/uridine kinase

Probab=95.98  E-value=0.005  Score=65.38  Aligned_cols=28  Identities=29%  Similarity=0.344  Sum_probs=24.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      -++|+.|+|||||||+.++|.|.. |..|
T Consensus        66 iIIGIaGpSGSGKTTLAk~LaglL-p~vg   93 (656)
T PLN02318         66 ILVGVAGPSGAGKTVFTEKVLNFM-PSIA   93 (656)
T ss_pred             EEEEEECCCCCcHHHHHHHHHhhC-CCcE
Confidence            489999999999999999999987 3444

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=95.95  E-value=0.0051  Score=62.40  Aligned_cols=26  Identities=38%  Similarity=0.553  Sum_probs=22.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      ++.+++|+|+||+|||||+..|++.+
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L  265 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQF  265 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHH
Confidence            35799999999999999999998754

>PRK09183 transposase/IS protein; Provisional

Probab=95.95  E-value=0.0023  Score=62.01  Aligned_cols=35  Identities=31%  Similarity=0.498  Sum_probs=31.2

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ..+.++++ +++|+.+.|+|++|+|||++...|.+.
T Consensus        91 ~~L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~  125 (259)
T PRK09183         91 QSLRSLSF-IERNENIVLLGPSGVGKTHLAIALGYE  125 (259)
T ss_pred             HHHhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence            46778888 999999999999999999999999654

>TIGR00602 rad24 checkpoint protein rad24

Probab=95.93  E-value=0.0034  Score=67.98  Aligned_cols=39  Identities=28%  Similarity=0.431  Sum_probs=34.9

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      .++++.++...+|+++.|.||+|+||||++++|+|.+.+
T Consensus        98 ~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~  136 (637)
T TIGR00602        98 TWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGI  136 (637)
T ss_pred             HHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            367888889999999999999999999999999997653

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=95.92  E-value=0.4  Score=52.53  Aligned_cols=95  Identities=22%  Similarity=0.257  Sum_probs=62.9

Q ss_pred             HHHHHHHHHhHHHHHHHhCc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--CchHHHHHHHHHHHHHHHH
Q 011717          135 SSLVTEKELKLRQVMTMMGL-YDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLN--NSFAVLFLLFFLFELNMTG  211 (479)
Q Consensus       135 ~~iV~EKe~klke~m~~mGl-~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~--~~~~~l~ll~~l~g~s~i~  211 (479)
                      ..+..||..=.||.  ..|+ +..+|++|..+.++...++..++..++.+..  ..+..  ..+...++++++..++...
T Consensus       413 ~~f~~er~v~~rE~--~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~--~gl~~~~~~f~~f~l~~~l~~~~~~s  488 (617)
T TIGR00955       413 NVFTAELPVFLRET--RSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWM--IGLRSGATHFLTFLFLVTLVANVATS  488 (617)
T ss_pred             HHHHHHHHHHHHhh--cCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhhee--ccCCccHHHHHHHHHHHHHHHHHHHH
Confidence            34567887766665  5577 6689999999999888777665554433221  11111  1233333445566777888


Q ss_pred             HHHHHHHhcCCchhhhHHHHHH
Q 011717          212 FAFMFSAFISKSSSSTTIGFSV  233 (479)
Q Consensus       212 ~~~~~S~fF~~~~~a~~~~~~~  233 (479)
                      +++++++++.+...|..++.++
T Consensus       489 ~~~~i~~~~~~~~~a~~~~~~~  510 (617)
T TIGR00955       489 FGYLISCAFSSTSMALTVGPPF  510 (617)
T ss_pred             HHHHHHHhcCchHHHHHHHHHH
Confidence            9999999999988887665444

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=95.91  E-value=0.0064  Score=61.47  Aligned_cols=31  Identities=29%  Similarity=0.451  Sum_probs=26.9

Q ss_pred             EEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       441 sl~v~~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      ++.+.+|+++++.||+|+|||||+.-|+...
T Consensus       200 ~~~~~~~~ii~lvGptGvGKTTt~akLA~~l  230 (407)
T PRK12726        200 SFDLSNHRIISLIGQTGVGKTTTLVKLGWQL  230 (407)
T ss_pred             CceecCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4567889999999999999999999988643

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=95.87  E-value=0.0056  Score=63.61  Aligned_cols=29  Identities=34%  Similarity=0.599  Sum_probs=25.3

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      +.+|++++++||||+|||||+..|++.+.
T Consensus       218 ~~~~~~i~~vGptGvGKTTt~~kLA~~~~  246 (424)
T PRK05703        218 LKQGGVVALVGPTGVGKTTTLAKLAARYA  246 (424)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            56789999999999999999999987543

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=95.85  E-value=0.011  Score=62.64  Aligned_cols=44  Identities=23%  Similarity=0.459  Sum_probs=39.4

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh---CCCCCCCcccC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT---GITPVTGGDGC  479 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt---G~~~pTsG~a~  479 (479)
                      .=+||+.+.. +|.+.++-|++|+||||+-+.|+   |..-.++|..|
T Consensus       273 RLIDN~~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~Y  319 (512)
T PRK13477        273 RLIDNVFLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMY  319 (512)
T ss_pred             EEEeeeEecc-CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCcee
Confidence            4699999977 89999999999999999999999   88888888765

>PF12679 ABC2_membrane_2: ABC-2 family transporter protein

Probab=95.69  E-value=1.1  Score=43.26  Aligned_cols=103  Identities=17%  Similarity=0.190  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHH---HHHHHHHHHHHhh---cccccccCchHHHHHHHHHHHH
Q 011717          134 ISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVL---LSSLFIVIFGMMF---QFDFFLNNSFAVLFLLFFLFEL  207 (479)
Q Consensus       134 v~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~---i~~~~~ii~~~~~---~~~~f~~~~~~~l~ll~~l~g~  207 (479)
                      ...+..|||+|-=+.+....++..-+.++-++...+..+   +...+..++....   ........+.....+...+..+
T Consensus        87 ~~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (277)
T PF12679_consen   87 SDLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLL  166 (277)
T ss_pred             HHHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence            445779999999999999999999999998887766532   2211111111111   0001111112221222222222


Q ss_pred             ---HHHHHHHHHHHhcCCchhhhHHHHHHHHH
Q 011717          208 ---NMTGFAFMFSAFISKSSSSTTIGFSVFIV  236 (479)
Q Consensus       208 ---s~i~~~~~~S~fF~~~~~a~~~~~~~~~~  236 (479)
                         ...+.++++|.++++++.|..++..+++.
T Consensus       167 ~~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~  198 (277)
T PF12679_consen  167 AVLVFISLGLLISSLFRSSASAILASLGLLFL  198 (277)
T ss_pred             HHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHH
Confidence               44788999999999888887766555443

>PRK14974 cell division protein FtsY; Provisional

Probab=95.66  E-value=0.0054  Score=61.55  Aligned_cols=28  Identities=39%  Similarity=0.469  Sum_probs=23.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      ++.+++++|+||+|||||+..|+..+..
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~  166 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKK  166 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            3579999999999999999999876543

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=95.57  E-value=0.0076  Score=61.51  Aligned_cols=27  Identities=33%  Similarity=0.432  Sum_probs=24.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      =++|+.|++|+||||+.+.|.|++.++
T Consensus       213 lIIGIsG~qGSGKSTLa~~L~~lL~~~  239 (460)
T PLN03046        213 LVIGFSAPQGCGKTTLVFALDYLFRVT  239 (460)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            488999999999999999999988776

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=95.57  E-value=0.006  Score=59.54  Aligned_cols=30  Identities=37%  Similarity=0.440  Sum_probs=25.2

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      -.++.+++++|++|+|||||..-|+..+..
T Consensus        69 ~~~~~vi~l~G~~G~GKTTt~akLA~~l~~   98 (272)
T TIGR00064        69 ENKPNVILFVGVNGVGKTTTIAKLANKLKK   98 (272)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence            345689999999999999999999876543

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>cd01858 NGP_1 NGP-1

Probab=95.57  E-value=0.013  Score=52.17  Aligned_cols=25  Identities=20%  Similarity=0.255  Sum_probs=21.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      -.++++|.+|+||||++|.|.|...
T Consensus       103 ~~v~~~G~~nvGKStliN~l~~~~~  127 (157)
T cd01858         103 ISVGFIGYPNVGKSSIINTLRSKKV  127 (157)
T ss_pred             eEEEEEeCCCCChHHHHHHHhcCCc
Confidence            3567999999999999999999544

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01878 HflX HflX subfamily

Probab=95.55  E-value=0.012  Score=54.64  Aligned_cols=23  Identities=39%  Similarity=0.567  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .++++|++|+||||+++.|+|..
T Consensus        43 ~I~iiG~~g~GKStLl~~l~~~~   65 (204)
T cd01878          43 TVALVGYTNAGKSTLFNALTGAD   65 (204)
T ss_pred             eEEEECCCCCCHHHHHHHHhcch
Confidence            67899999999999999999964

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=95.55  E-value=0.015  Score=58.88  Aligned_cols=35  Identities=29%  Similarity=0.454  Sum_probs=31.9

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      .-..|-||.|-.|.-.||+||||-||||+++-|..
T Consensus       278 ~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~  312 (807)
T KOG0066|consen  278 LLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAA  312 (807)
T ss_pred             eeeeccceEEEecceecccCCCCCchHHHHHHHHh
Confidence            35778899999999999999999999999998865

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=95.55  E-value=0.0092  Score=60.36  Aligned_cols=34  Identities=26%  Similarity=0.471  Sum_probs=27.8

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CCcc
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGD  477 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-TsG~  477 (479)
                      ..++..+.+.|++|+|||||++.|.+..++ ..|.
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~  153 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGH  153 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCE
Confidence            456889999999999999999999986653 3443

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=95.48  E-value=0.011  Score=59.55  Aligned_cols=35  Identities=29%  Similarity=0.349  Sum_probs=30.2

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      .+..+..+.+.|+.||||||+++.|.+.+++..+.
T Consensus       158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~~ri  192 (344)
T PRK13851        158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQERL  192 (344)
T ss_pred             HHHcCCeEEEECCCCccHHHHHHHHHcccCCCCCE
Confidence            35567789999999999999999999999887653

>PRK09866 hypothetical protein; Provisional

Probab=95.48  E-value=0.012  Score=62.89  Aligned_cols=27  Identities=30%  Similarity=0.502  Sum_probs=23.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC-CCCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGI-TPVTG  475 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~-~~pTs  475 (479)
                      +.+++|++||||||++|.|+|. .-||+
T Consensus        71 ~valvG~sgaGKSTLiNaL~G~~Vlpt~   98 (741)
T PRK09866         71 VLAIVGTMKAGKSTTINAIVGTEVLPNR   98 (741)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCccccCC
Confidence            6789999999999999999994 55553

>COG1668 NatB ABC-type Na+ efflux pump, permease component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=95.43  E-value=1.1  Score=46.40  Aligned_cols=100  Identities=15%  Similarity=0.054  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHH--Hhhcccc-------cccCchH--HHHH
Q 011717          132 FQISSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG--MMFQFDF-------FLNNSFA--VLFL  200 (479)
Q Consensus       132 ~~v~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~--~~~~~~~-------f~~~~~~--~l~l  200 (479)
                      ....+++.|||+|.-|.+..+.++..-+-.+=.+--.++.++...++.+.+  ..+....       +......  ...+
T Consensus       205 ~~~~sva~EKe~rtlE~LLssPvSr~~ii~gKil~~~~v~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  284 (407)
T COG1668         205 MVADSVAGEKERRTLEVLLSSPVSRSEIVFGKILGAALVGLTQIALWLLALTIATFLSLAVALAGTGLALLPAYLLLFAL  284 (407)
T ss_pred             HHHHHHHHHhhhchhhhhhccCcChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhHHhhhHHHHHHHH
Confidence            445678999999999999999999988877777766665555544444433  0110000       0011111  1111


Q ss_pred             HHHHHH-HHHHHHHHHHHHhcCCchhhhHHHH
Q 011717          201 LFFLFE-LNMTGFAFMFSAFISKSSSSTTIGF  231 (479)
Q Consensus       201 l~~l~g-~s~i~~~~~~S~fF~~~~~a~~~~~  231 (479)
                      .+++-+ +.....+.+++.++++.+.|+....
T Consensus       285 ~~~l~~~l~~~~l~a~l~~~a~~~k~aq~~~~  316 (407)
T COG1668         285 SLFLLGLLLYAALAAFLGAMAGSIKEAQTLIS  316 (407)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhh
Confidence            122222 3444466778888888888876544

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=95.20  E-value=0.0074  Score=60.51  Aligned_cols=35  Identities=17%  Similarity=0.264  Sum_probs=30.1

Q ss_pred             eeEEEEeC--CcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          439 GLWVNIAK--DQLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       439 ~lsl~v~~--gei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      +++..+++  ++.++++|.+|+||||+++.|.+.+.+
T Consensus       152 ~i~~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~~  188 (325)
T TIGR01526       152 HIPREVRPFFVKTVAILGGESTGKSTLVNKLAAVFNT  188 (325)
T ss_pred             hCCHHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            46677777  899999999999999999999987543

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain

Probab=95.20  E-value=1.7  Score=40.31  Aligned_cols=128  Identities=12%  Similarity=0.155  Sum_probs=75.1

Q ss_pred             HHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccccCchHHHHHHHHHHHHHHHHHHHH
Q 011717          137 LVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMM-FQFDFFLNNSFAVLFLLFFLFELNMTGFAFM  215 (479)
Q Consensus       137 iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~-~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~  215 (479)
                      +..+||.|.    +....+.+.++++..+...+..++.++++.++... ++.+   ..++..+++..++.+++...++.+
T Consensus        44 ~~~~~~~~~----~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~---~~~~~~~~l~~~l~~~~~~~lg~~  116 (208)
T TIGR03062        44 IIPPLSRRA----LPKSARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLD---PAHPPATFGFAILTSLTFMAIIQF  116 (208)
T ss_pred             Hhccccccc----cccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc---cCCHHHHHHHHHHHHHHHHHHHHH
Confidence            445666554    35678888889999998887777776655544322 3332   124556666778888999999999


Q ss_pred             HHHhcCCchhhhHHHHHHHHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHH
Q 011717          216 FSAFISKSSSSTTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLL  277 (479)
Q Consensus       216 ~S~fF~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i  277 (479)
                      ++.++++...+.  ...+.+..+   ......+|. +..+..++++..+.|......++...
T Consensus       117 l~~~~~~~~~~~--~~~~~~~~~---~~sG~~~P~-~~~P~~~~~i~~~~P~t~~~~~~r~~  172 (208)
T TIGR03062       117 LVALFGNVGRFL--ALVLLVLQL---GSSGGTFPI-ELLPAFFQAIHPFLPMTYSVNGLRQL  172 (208)
T ss_pred             HHHHhCcchHHH--HHHHHHHHH---ccCCCccch-hhCHHHHHHhhhhCcHHHHHHHHHHH
Confidence            999998654322  211111100   000001221 23455667777788876555555443

This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.

>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase

Probab=95.20  E-value=0.015  Score=58.67  Aligned_cols=35  Identities=29%  Similarity=0.344  Sum_probs=31.1

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..+.-+.+.|++|+||||+++.|.++.+|..|.+
T Consensus       175 v~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv  209 (340)
T TIGR03819       175 VAARLAFLISGGTGSGKTTLLSALLALVAPDERIV  209 (340)
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEE
Confidence            45678999999999999999999999999988743

Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=95.14  E-value=0.015  Score=67.33  Aligned_cols=38  Identities=32%  Similarity=0.461  Sum_probs=29.0

Q ss_pred             eeeeEEE-EeCCcEEEEECCCCCcHHHHHHHHhC-CCCCC
Q 011717          437 IKGLWVN-IAKDQLFCLLGPNGAGKTTTISCLTG-ITPVT  474 (479)
Q Consensus       437 V~~lsl~-v~~gei~~LLG~NGAGKTTt~~mLtG-~~~pT  474 (479)
                      .=|++.. +..+.+|++.|+|||||||++..|+. ++.-|
T Consensus        19 ~idf~~~~l~~~~l~~I~G~tGaGKStildai~~aLyg~~   58 (1047)
T PRK10246         19 KIDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHET   58 (1047)
T ss_pred             eEEEeeccCCCCCEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence            3445543 55678999999999999999999995 44433

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=95.06  E-value=0.023  Score=65.03  Aligned_cols=41  Identities=29%  Similarity=0.416  Sum_probs=37.4

Q ss_pred             CcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          433 PYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       433 ~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      .+.-++|+|.-+++||.+-+|||-||||||+++.|+|-+.-
T Consensus       127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~  167 (1391)
T KOG0065|consen  127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDN  167 (1391)
T ss_pred             cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcc
Confidence            34689999999999999999999999999999999996543

>PRK12288 GTPase RsgA; Reviewed

Probab=94.80  E-value=0.019  Score=58.03  Aligned_cols=31  Identities=26%  Similarity=0.469  Sum_probs=25.6

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       447 gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      +++.+|+|+.|+||||++|.|.|......|+
T Consensus       205 ~ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~  235 (347)
T PRK12288        205 GRISIFVGQSGVGKSSLINALLPEAEILVGD  235 (347)
T ss_pred             hCCEEEECCCCCCHHHHHHHhccccceeecc
Confidence            4578999999999999999999976554443

>PRK13898 type IV secretion system ATPase VirB4; Provisional

Probab=94.74  E-value=0.032  Score=62.98  Aligned_cols=39  Identities=21%  Similarity=0.237  Sum_probs=32.9

Q ss_pred             eEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       440 lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++.+..+..++++|++|+||||+++.|.+......+++
T Consensus       439 ~n~~~~~~~~~~i~G~tGsGKS~l~~~l~~~~~~~~~~i  477 (800)
T PRK13898        439 FNFHVRDVGHTLIIGPTGAGKTVLMNFLCAQAMKFSPRM  477 (800)
T ss_pred             EEEEEcCCCEEEEECCCCCcHHHHHHHHHhhcccCCCeE
Confidence            467778889999999999999999999999776655543

>PRK12289 GTPase RsgA; Reviewed

Probab=94.73  E-value=0.028  Score=56.85  Aligned_cols=30  Identities=27%  Similarity=0.482  Sum_probs=25.3

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          447 DQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       447 gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      +.+.+++|+.|+||||++|.|.|......|
T Consensus       172 ~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~  201 (352)
T PRK12289        172 NKITVVAGPSGVGKSSLINRLIPDVELRVG  201 (352)
T ss_pred             cceEEEEeCCCCCHHHHHHHHcCccccccc
Confidence            467899999999999999999987655444

>PTZ00035 Rad51 protein; Provisional

Probab=94.68  E-value=0.02  Score=57.75  Aligned_cols=30  Identities=23%  Similarity=0.214  Sum_probs=27.0

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      ++++|+++.+.|++|+||||+...+++...
T Consensus       114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~q  143 (337)
T PTZ00035        114 GIETGSITELFGEFRTGKTQLCHTLCVTCQ  143 (337)
T ss_pred             CCCCCeEEEEECCCCCchhHHHHHHHHHhc
Confidence            799999999999999999999999876443

>COG1162 Predicted GTPases [General function prediction only]

Probab=94.48  E-value=0.027  Score=55.02  Aligned_cols=32  Identities=31%  Similarity=0.426  Sum_probs=26.3

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      -+|.+.+|+|+.|.||||++|-|.|....--|
T Consensus       162 l~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~  193 (301)
T COG1162         162 LAGKITVLLGQSGVGKSTLINALLPELNQKTG  193 (301)
T ss_pred             hcCCeEEEECCCCCcHHHHHHhhCchhhhhhh
Confidence            35779999999999999999999986544433

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=94.45  E-value=0.029  Score=56.96  Aligned_cols=33  Identities=36%  Similarity=0.638  Sum_probs=26.6

Q ss_pred             eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .+++  .+.++-+++|+||.|+|||||+-=|+..+
T Consensus       195 ~~~~--~~~~~~vi~LVGPTGVGKTTTlAKLAar~  227 (407)
T COG1419         195 IENL--IVEQKRVIALVGPTGVGKTTTLAKLAARY  227 (407)
T ss_pred             cccc--ccccCcEEEEECCCCCcHHHHHHHHHHHH
Confidence            4444  55779999999999999999998776543

>cd01882 BMS1 Bms1

Probab=94.32  E-value=0.038  Score=52.39  Aligned_cols=28  Identities=32%  Similarity=0.437  Sum_probs=25.2

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      ..++++++++|++|+||||+++.|.+..
T Consensus        36 ~~~~~~i~ivG~~~~GKstl~~~l~~~~   63 (225)
T cd01882          36 EPPPLVVAVVGPPGVGKTTLIKSLVKNY   63 (225)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            5678999999999999999999998864

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=94.32  E-value=0.037  Score=41.88  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHhCCC
Q 011717          450 FCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .++.|+.|+||||+.+.|...+
T Consensus         2 i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999998764

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=94.11  E-value=0.042  Score=56.26  Aligned_cols=27  Identities=52%  Similarity=0.806  Sum_probs=22.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      ++.++.++|+||+|||||+.=|+..+.
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~  199 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYG  199 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456999999999999999998876443

>PTZ00202 tuzin; Provisional

Probab=94.04  E-value=0.029  Score=57.60  Aligned_cols=35  Identities=14%  Similarity=0.227  Sum_probs=28.8

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .++++++.+++  .+..|.|++|+||||+++.+.+..
T Consensus       276 ~VL~~~d~~~p--rivvLtG~~G~GKTTLlR~~~~~l  310 (550)
T PTZ00202        276 QVLRRLDTAHP--RIVVFTGFRGCGKSSLCRSAVRKE  310 (550)
T ss_pred             HHHhccCCCCc--eEEEEECCCCCCHHHHHHHHHhcC
Confidence            36677777765  399999999999999999998754

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=94.03  E-value=0.037  Score=54.63  Aligned_cols=24  Identities=42%  Similarity=0.541  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      -++-++|.||+|||||+.=|+-.+
T Consensus       140 ~Vil~vGVNG~GKTTTIaKLA~~l  163 (340)
T COG0552         140 FVILFVGVNGVGKTTTIAKLAKYL  163 (340)
T ss_pred             EEEEEEecCCCchHhHHHHHHHHH
Confidence            477899999999999998776433

>PLN03210 Resistant to P

Probab=93.97  E-value=0.027  Score=66.21  Aligned_cols=31  Identities=26%  Similarity=0.368  Sum_probs=27.4

Q ss_pred             eEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       440 lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ++++..+++++|+.|++|+||||+.+.+.+.
T Consensus       200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~  230 (1153)
T PLN03210        200 LHLESEEVRMVGIWGSSGIGKTTIARALFSR  230 (1153)
T ss_pred             HccccCceEEEEEEcCCCCchHHHHHHHHHH
Confidence            5677888999999999999999999999554

syringae 6; Provisional

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=93.92  E-value=0.028  Score=56.29  Aligned_cols=25  Identities=28%  Similarity=0.227  Sum_probs=21.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      -++|+.|++||||||+++.|...+.
T Consensus        57 ~~igi~G~~GaGKSTl~~~l~~~l~   81 (332)
T PRK09435         57 LRIGITGVPGVGKSTFIEALGMHLI   81 (332)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4899999999999999998876554

>PF12730 ABC2_membrane_4: ABC-2 family transporter protein

Probab=93.83  E-value=4.9  Score=36.65  Aligned_cols=96  Identities=18%  Similarity=0.247  Sum_probs=56.1

Q ss_pred             HHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHH----HhhcccccccCc----hHHHHHHHHHHHHH
Q 011717          137 LVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFG----MMFQFDFFLNNS----FAVLFLLFFLFELN  208 (479)
Q Consensus       137 iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~----~~~~~~~f~~~~----~~~l~ll~~l~g~s  208 (479)
                      .-+|+++|.-+.+...+.+..-++.+-++.-.+..++..++..+..    .......+....    ....++..++....
T Consensus        70 ~~~e~~~~~~~~~~~~~~~r~~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (232)
T PF12730_consen   70 FSREYKNGTIKLLLSRPISRKKIFLAKFIVILIIILLLFLISFLISLLIGLLFGFSGFDYSSLLQYLISYLLLFLLLSLF  149 (232)
T ss_pred             HHHHHhcChhhHhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHHHHHH
Confidence            5699999998999999999999999998887776665544433222    222211111111    11222333344444


Q ss_pred             HHHHHHHHHHhcCCchhhhHHHHHH
Q 011717          209 MTGFAFMFSAFISKSSSSTTIGFSV  233 (479)
Q Consensus       209 ~i~~~~~~S~fF~~~~~a~~~~~~~  233 (479)
                      .... .+++.++++...+..++.+.
T Consensus       150 ~~~~-~~i~~~~~~~~~~i~~~~~~  173 (232)
T PF12730_consen  150 ISLL-LFISSLFRNSIVAIIISILL  173 (232)
T ss_pred             HHHH-HHHHHHHhhHHHHHHHHHHH
Confidence            5555 77788888755454444433

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=93.78  E-value=0.09  Score=51.12  Aligned_cols=36  Identities=25%  Similarity=0.235  Sum_probs=32.2

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ..+|++.-++++|+++.+.|+.|+||||+...++-.
T Consensus        18 ~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~   53 (271)
T cd01122          18 PVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALD   53 (271)
T ss_pred             ceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHH
Confidence            579999889999999999999999999988876554

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=93.64  E-value=0.058  Score=55.45  Aligned_cols=26  Identities=35%  Similarity=0.638  Sum_probs=22.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      ++.+++++|++|+|||||..-|+...
T Consensus       222 ~~~vi~lvGptGvGKTTtaaKLA~~~  247 (432)
T PRK12724        222 QRKVVFFVGPTGSGKTTSIAKLAAKY  247 (432)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            56799999999999999999988643

>KOG4181 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.59  E-value=0.053  Score=53.38  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=21.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      -++|.||.-|+||||++|||+|.
T Consensus       189 ~VIgvlG~QgsGKStllslLaan  211 (491)
T KOG4181|consen  189 TVIGVLGGQGSGKSTLLSLLAAN  211 (491)
T ss_pred             eEEEeecCCCccHHHHHHHHhcc
Confidence            36899999999999999999997

>TIGR02239 recomb_RAD51 DNA repair protein RAD51

Probab=93.41  E-value=0.038  Score=55.21  Aligned_cols=41  Identities=22%  Similarity=0.264  Sum_probs=33.0

Q ss_pred             eeee-eEEEEeCCcEEEEECCCCCcHHHHHHHHhC--CCCCCCc
Q 011717          436 AIKG-LWVNIAKDQLFCLLGPNGAGKTTTISCLTG--ITPVTGG  476 (479)
Q Consensus       436 AV~~-lsl~v~~gei~~LLG~NGAGKTTt~~mLtG--~~~pTsG  476 (479)
                      .+|. +.=++++|+++.+.|++|+||||+...++.  ..+++.|
T Consensus        84 ~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~G  127 (316)
T TIGR02239        84 ELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQG  127 (316)
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcC
Confidence            4565 344799999999999999999999999886  5555554

This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=93.32  E-value=0.06  Score=59.32  Aligned_cols=21  Identities=38%  Similarity=0.599  Sum_probs=18.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHh
Q 011717          448 QLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLt  468 (479)
                      -++.+.|+|||||||+++.+.
T Consensus        29 ~~~~i~G~Ng~GKttll~ai~   49 (650)
T TIGR03185        29 PIILIGGLNGAGKTTLLDAIQ   49 (650)
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            378899999999999999763

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=93.14  E-value=0.067  Score=58.39  Aligned_cols=33  Identities=27%  Similarity=0.228  Sum_probs=27.6

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      ...+-+.|.|+||+||||+.+++.++..+.+|+
T Consensus       173 ~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~  205 (615)
T TIGR02903       173 PFPQHIILYGPPGVGKTTAARLALEEAKKLKHT  205 (615)
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCC
Confidence            345679999999999999999999988765553

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=93.04  E-value=0.097  Score=50.42  Aligned_cols=24  Identities=33%  Similarity=0.573  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      .++|+|..|+||||++|.|.|...
T Consensus        33 ~IllvG~tGvGKSSliNaLlg~~~   56 (249)
T cd01853          33 TILVLGKTGVGKSSTINSIFGERK   56 (249)
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Confidence            467999999999999999999653

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=92.77  E-value=0.098  Score=50.84  Aligned_cols=28  Identities=29%  Similarity=0.417  Sum_probs=22.8

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      .++..+.+.|+.|+|||||++.+...++
T Consensus        78 ~~~GlilisG~tGSGKTT~l~all~~i~  105 (264)
T cd01129          78 KPHGIILVTGPTGSGKTTTLYSALSELN  105 (264)
T ss_pred             cCCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence            4566899999999999999997755444

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=92.70  E-value=0.12  Score=50.71  Aligned_cols=33  Identities=39%  Similarity=0.556  Sum_probs=27.6

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      +.|.-+-+||.||+||||+|+-|-|-..+-.|+
T Consensus        50 psgk~VlvlGdn~sGKtsLi~klqg~e~~Kkgs   82 (473)
T KOG3905|consen   50 PSGKNVLVLGDNGSGKTSLISKLQGSETVKKGS   82 (473)
T ss_pred             CCCCeEEEEccCCCchhHHHHHhhcccccCCCC
Confidence            456667799999999999999999977766664

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=92.58  E-value=0.14  Score=45.26  Aligned_cols=27  Identities=22%  Similarity=0.293  Sum_probs=23.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      ++...+++|+.|+||||++|.|+|...
T Consensus        99 ~~~~~~~~G~~~~GKstlin~l~~~~~  125 (155)
T cd01849          99 KSITVGVIGYPNVGKSSVINALLNKLK  125 (155)
T ss_pred             cCcEEEEEccCCCCHHHHHHHHHcccc
Confidence            457789999999999999999999653

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=92.54  E-value=0.2  Score=43.56  Aligned_cols=25  Identities=32%  Similarity=0.466  Sum_probs=22.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      ..+++|..|+||||++|.|+|...+
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~~~  109 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKKKV  109 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce
Confidence            7899999999999999999997653

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=92.49  E-value=0.1  Score=44.46  Aligned_cols=27  Identities=30%  Similarity=0.386  Sum_probs=23.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      .+..+.+.|+.|.||||+.+.+.....
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            556888999999999999999988653

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR00416 sms DNA repair protein RadA

Probab=92.22  E-value=0.076  Score=55.75  Aligned_cols=42  Identities=17%  Similarity=0.162  Sum_probs=33.2

Q ss_pred             eeeeeE-EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       436 AV~~ls-l~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      -+|.+- =++.+|+++.+.|.+|+||||++..+++......|.
T Consensus        82 ~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~k  124 (454)
T TIGR00416        82 ELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMK  124 (454)
T ss_pred             HHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCc
Confidence            355542 379999999999999999999999988766554443

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=92.09  E-value=0.11  Score=44.13  Aligned_cols=25  Identities=36%  Similarity=0.430  Sum_probs=21.9

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      ++|+++.|-|.=||||||..+-|.-
T Consensus        13 ~~g~vi~L~GdLGaGKTtf~r~l~~   37 (123)
T PF02367_consen   13 KPGDVILLSGDLGAGKTTFVRGLAR   37 (123)
T ss_dssp             SS-EEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHH
Confidence            7899999999999999999998764

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=92.01  E-value=0.13  Score=57.72  Aligned_cols=30  Identities=30%  Similarity=0.517  Sum_probs=23.7

Q ss_pred             eeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       438 ~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      +|++++ ..+.+..|.|||++||||+++.+.
T Consensus       319 ndi~l~-~~~~~~iITGpN~gGKTt~lktig  348 (782)
T PRK00409        319 KDISLG-FDKTVLVITGPNTGGKTVTLKTLG  348 (782)
T ss_pred             ceeEEC-CCceEEEEECCCCCCcHHHHHHHH
Confidence            344443 345789999999999999999885

>COG1157 FliI Flagellar biosynthesis/type III secretory pathway ATPase [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=91.96  E-value=0.18  Score=51.25  Aligned_cols=37  Identities=30%  Similarity=0.454  Sum_probs=32.5

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      .|+|++ |++-+||-.|+-.-.|-||||++.||+.-..
T Consensus       152 RaIDgl-lT~G~GQRiGIFAgsGVGKStLLgMiar~t~  188 (441)
T COG1157         152 RAIDGL-LTCGKGQRIGIFAGSGVGKSTLLGMIARNTE  188 (441)
T ss_pred             eeeecc-cccccCceeEEEecCCCcHHHHHHHHhcccc
Confidence            467766 7999999999999999999999999997544

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=91.83  E-value=0.17  Score=53.56  Aligned_cols=27  Identities=30%  Similarity=0.445  Sum_probs=21.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      ++.++.+.|++|+|||||+..+...+.
T Consensus       241 ~~GlilitGptGSGKTTtL~a~L~~l~  267 (486)
T TIGR02533       241 PHGIILVTGPTGSGKTTTLYAALSRLN  267 (486)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHhccC
Confidence            445899999999999999995555444

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>PF00488 MutS_V: MutS domain V C-terminus

Probab=91.80  E-value=0.19  Score=47.96  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=25.3

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      .=+++.++-....+..|-|||.+||||.++.+.
T Consensus        32 v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~   64 (235)
T PF00488_consen   32 VPNDIELSNNKSRIIIITGPNMSGKSTFLKQIG   64 (235)
T ss_dssp             --EEEEESSSSSSEEEEESSTTSSHHHHHHHHH
T ss_pred             ecceeecCCCceeEEEEeCCCccchhhHHHHHH
Confidence            346666655555699999999999999999874

; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....

>COG3910 Predicted ATPase [General function prediction only]

Probab=91.71  E-value=0.15  Score=46.30  Aligned_cols=21  Identities=29%  Similarity=0.605  Sum_probs=19.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHh
Q 011717          448 QLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLt  468 (479)
                      -|+.+.|-||.||||++.-|.
T Consensus        38 pIT~i~GENGsGKSTLLEaiA   58 (233)
T COG3910          38 PITFITGENGSGKSTLLEAIA   58 (233)
T ss_pred             ceEEEEcCCCccHHHHHHHHH
Confidence            589999999999999998775

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=91.68  E-value=0.13  Score=54.89  Aligned_cols=26  Identities=38%  Similarity=0.623  Sum_probs=22.5

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       447 gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      +++..|-||.|+|||||+++|+-.+.
T Consensus        45 ~~iLlLtGP~G~GKtttv~~La~elg   70 (519)
T PF03215_consen   45 KRILLLTGPSGCGKTTTVKVLAKELG   70 (519)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhC
Confidence            35899999999999999999987643

>PF13245 AAA_19: Part of AAA domain

Probab=91.57  E-value=0.16  Score=39.20  Aligned_cols=22  Identities=45%  Similarity=0.798  Sum_probs=17.0

Q ss_pred             CCcEEEEECCCCCcHHHHH-HHH
Q 011717          446 KDQLFCLLGPNGAGKTTTI-SCL  467 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~-~mL  467 (479)
                      ++.++.+.|+-|+|||||+ +.+
T Consensus         9 ~~~~~vv~g~pGtGKT~~~~~~i   31 (76)
T PF13245_consen    9 GSPLFVVQGPPGTGKTTTLAARI   31 (76)
T ss_pred             hCCeEEEECCCCCCHHHHHHHHH
Confidence            4678888999999999554 443

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=91.56  E-value=0.15  Score=52.90  Aligned_cols=23  Identities=35%  Similarity=0.515  Sum_probs=20.6

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhC
Q 011717          447 DQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       447 gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      ..++++.|++|+|||||..-|+-
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~  122 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAY  122 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999874

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=91.50  E-value=0.15  Score=51.50  Aligned_cols=26  Identities=38%  Similarity=0.740  Sum_probs=22.7

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          447 DQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       447 gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      .++++|.||.|+||||+-+.|...+.
T Consensus        78 r~il~L~GPPGsGKStla~~La~~l~  103 (361)
T smart00763       78 KQILYLLGPVGGGKSSLVECLKRGLE  103 (361)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            47899999999999999999987543

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=91.44  E-value=0.097  Score=53.44  Aligned_cols=35  Identities=20%  Similarity=0.340  Sum_probs=30.0

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      ++.+|+++.+-|++|+||||++..+++......|.
T Consensus        78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~  112 (372)
T cd01121          78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGK  112 (372)
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCe
Confidence            69999999999999999999999988766554444

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=91.39  E-value=0.12  Score=51.23  Aligned_cols=30  Identities=23%  Similarity=0.319  Sum_probs=25.0

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      +..+.-+.+-|+.|+||||+++-|.+.++.
T Consensus       129 v~~~~~ilI~G~tGSGKTTll~al~~~i~~  158 (299)
T TIGR02782       129 VLARKNILVVGGTGSGKTTLANALLAEIAK  158 (299)
T ss_pred             HHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence            345567789999999999999999998754

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=91.21  E-value=0.19  Score=50.10  Aligned_cols=27  Identities=33%  Similarity=0.431  Sum_probs=23.9

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      +.++.+++|.|.+||||||.-++|...
T Consensus       130 ~~~~~~I~l~G~~GsGKStvg~~La~~  156 (309)
T PRK08154        130 AARRRRIALIGLRGAGKSTLGRMLAAR  156 (309)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHHH
Confidence            567889999999999999999999743

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=91.14  E-value=0.16  Score=50.81  Aligned_cols=28  Identities=21%  Similarity=0.428  Sum_probs=25.0

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .+..+..+.+.|+.|+||||+++.|.+.
T Consensus       144 ~v~~~~~ilI~G~tGSGKTTll~aL~~~  171 (319)
T PRK13894        144 AVRAHRNILVIGGTGSGKTTLVNAIINE  171 (319)
T ss_pred             HHHcCCeEEEECCCCCCHHHHHHHHHHh
Confidence            4567889999999999999999999986

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=91.07  E-value=0.14  Score=57.39  Aligned_cols=29  Identities=34%  Similarity=0.621  Sum_probs=26.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      +|++++|+||.|.||||+.+.+++.+...
T Consensus       348 ~g~~i~l~GppG~GKTtl~~~ia~~l~~~  376 (784)
T PRK10787        348 KGPILCLVGPPGVGKTSLGQSIAKATGRK  376 (784)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            78999999999999999999999876544

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=90.40  E-value=0.22  Score=51.36  Aligned_cols=24  Identities=29%  Similarity=0.494  Sum_probs=21.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      ..++++|+.|+||||+.+.|.-.+
T Consensus       220 ~~IvI~G~~gsGKTTL~~~La~~~  243 (399)
T PRK08099        220 RTVAILGGESSGKSTLVNKLANIF  243 (399)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHh
Confidence            578999999999999999998653

>PRK13853 type IV secretion system protein VirB4; Provisional

Probab=90.31  E-value=0.29  Score=55.17  Aligned_cols=24  Identities=29%  Similarity=0.593  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      -+.++|++||||||++++|.++..
T Consensus       428 ~~~I~G~tGsGKS~l~~~l~~~~~  451 (789)
T PRK13853        428 MTAIFGPIGRGKTTLMTFILAMLE  451 (789)
T ss_pred             EEEEECCCCCCHHHHHHHHHhhCc
Confidence            588999999999999999987643

>PRK12608 transcription termination factor Rho; Provisional

Probab=90.19  E-value=0.27  Score=49.86  Aligned_cols=34  Identities=24%  Similarity=0.294  Sum_probs=28.0

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      |+|.+ +.+-+||-.++.|+-|+||||++++|.-.
T Consensus       123 vID~l-~PiGkGQR~LIvG~pGtGKTTLl~~la~~  156 (380)
T PRK12608        123 VVDLV-APIGKGQRGLIVAPPRAGKTVLLQQIAAA  156 (380)
T ss_pred             hhhhe-eecCCCceEEEECCCCCCHHHHHHHHHHH
Confidence            44444 46789999999999999999999987653

>PLN02200 adenylate kinase family protein

Probab=90.11  E-value=0.2  Score=47.77  Aligned_cols=34  Identities=26%  Similarity=0.424  Sum_probs=26.7

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHh---CCCCCCCcc
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLT---GITPVTGGD  477 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLt---G~~~pTsG~  477 (479)
                      ..+.-++.++|+.|+||||.-+.|+   |..-.+.|+
T Consensus        40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gd   76 (234)
T PLN02200         40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGD   76 (234)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccH
Confidence            4445688999999999999988887   665555554

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=90.09  E-value=0.24  Score=54.36  Aligned_cols=30  Identities=33%  Similarity=0.572  Sum_probs=28.6

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHH
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTIS  465 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~  465 (479)
                      =++|++.+++-|..+++-|..|+||||+++
T Consensus       616 NLkni~v~iPLg~~t~VTGVSGSGKSTLIn  645 (935)
T COG0178         616 NLKNIDVEIPLGVFTCVTGVSGSGKSTLIN  645 (935)
T ss_pred             CcccceeecccccEEEEEecCCCCHHHhHH
Confidence            499999999999999999999999999994

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=89.83  E-value=0.25  Score=56.02  Aligned_cols=32  Identities=25%  Similarity=0.368  Sum_probs=27.8

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      .=||+.++ ..+.+..|-|||++||||.++.++
T Consensus       597 vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~  628 (854)
T PRK05399        597 VPNDCDLD-EERRLLLITGPNMAGKSTYMRQVA  628 (854)
T ss_pred             EecceeeC-CCCcEEEEECCCCCCcHHHHHHHH
Confidence            45778888 778899999999999999999873

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=89.74  E-value=0.23  Score=52.13  Aligned_cols=28  Identities=32%  Similarity=0.552  Sum_probs=24.1

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      ++++.-|-||.|+|||||++.|+-.+-+
T Consensus       109 ~~~iLLltGPsGcGKSTtvkvLskelg~  136 (634)
T KOG1970|consen  109 GSRILLLTGPSGCGKSTTVKVLSKELGY  136 (634)
T ss_pred             CceEEEEeCCCCCCchhHHHHHHHhhCc
Confidence            4678999999999999999999976544

>PRK15066 inner membrane transport permease; Provisional

Probab=89.62  E-value=20  Score=34.38  Aligned_cols=135  Identities=10%  Similarity=0.144  Sum_probs=69.1

Q ss_pred             HHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcccccccCchHHHHHHHHHHHHHHHHHH
Q 011717          135 SSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIFGMM-FQFDFFLNNSFAVLFLLFFLFELNMTGFA  213 (479)
Q Consensus       135 ~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~~~~-~~~~~f~~~~~~~l~ll~~l~g~s~i~~~  213 (479)
                      ..++.||+.|.-+-+.++-++...+-++..+...+..++..+++++++.. ++...   .+....+..+++........+
T Consensus        82 ~~i~~~~~~~~~~~l~vtp~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~---~~~~~~l~~~ll~~~~f~~~g  158 (257)
T PRK15066         82 SSFFSAKFQRNIEELLVSPVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQV---HHWGIVLLTVLLTAILFSLGG  158 (257)
T ss_pred             HHHHHHHHhhhHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH---hHHHHHHHHHHHHHHHHHHHH
Confidence            34678888777777778889998888888887766655544333333222 22211   122222222222222233346


Q ss_pred             HHHHHhcCCchhhhH-HHHHHHHHHHHHHHHHhhccccCcccchhhhhhheecChHHHHHHHHHH
Q 011717          214 FMFSAFISKSSSSTT-IGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLLAEALQLL  277 (479)
Q Consensus       214 ~~~S~fF~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~~~~~~~~~~i  277 (479)
                      +++|..-.+.+.... ...+.....++..+    .++. +..+..++.+..+.|-..+..++...
T Consensus       159 l~~a~~~~~~~~~~~i~~~~~~pl~flSgi----~~p~-~~lP~~l~~i~~~nPlt~~v~~~R~~  218 (257)
T PRK15066        159 LINAVFAKSFDDISIIPTFVLTPLTYLGGV----FYSI-SLLPPFWQGVSKLNPIVYMVNAFRYG  218 (257)
T ss_pred             HHHHHHHccHHHHHHHHHHHHHHHHHHcch----hccH-HhChHHHHHHHHHCcHHHHHHHHHHH
Confidence            777766555444332 22222211111111    1121 12445567777788887776666654

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=89.42  E-value=0.16  Score=49.40  Aligned_cols=35  Identities=29%  Similarity=0.409  Sum_probs=29.6

Q ss_pred             eEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       440 lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      +...++.+..+.+-|+-|+||||+++.|...+++.
T Consensus       120 l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~  154 (270)
T PF00437_consen  120 LRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE  154 (270)
T ss_dssp             HHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred             HhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence            33446678889999999999999999999888776

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=89.39  E-value=0.27  Score=49.46  Aligned_cols=31  Identities=19%  Similarity=0.240  Sum_probs=26.0

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      +..+--+.+-|+.|+||||+++-|.+..++.
T Consensus       157 v~~~~nili~G~tgSGKTTll~aL~~~ip~~  187 (332)
T PRK13900        157 VISKKNIIISGGTSTGKTTFTNAALREIPAI  187 (332)
T ss_pred             HHcCCcEEEECCCCCCHHHHHHHHHhhCCCC
Confidence            3456678889999999999999999988764

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]

Probab=89.07  E-value=0.38  Score=47.89  Aligned_cols=27  Identities=30%  Similarity=0.471  Sum_probs=23.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGITPVTG  475 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~~pTs  475 (479)
                      -+-+-|-.|+|||||+|.|+|..+|+.
T Consensus       175 NILisGGTGSGKTTlLNal~~~i~~~e  201 (355)
T COG4962         175 NILISGGTGSGKTTLLNALSGFIDSDE  201 (355)
T ss_pred             eEEEeCCCCCCHHHHHHHHHhcCCCcc
Confidence            455669999999999999999999886

>PRK10646 ADP-binding protein; Provisional

Probab=89.06  E-value=0.4  Score=42.42  Aligned_cols=26  Identities=31%  Similarity=0.305  Sum_probs=22.6

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      +++|.++.|-|.=||||||..+-|.-
T Consensus        25 l~~g~vi~L~GdLGaGKTtf~rgl~~   50 (153)
T PRK10646         25 CDGATVIYLYGDLGAGKTTFSRGFLQ   50 (153)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence            35688999999999999999998854

>PRK12597 F0F1 ATP synthase subunit beta; Provisional

Probab=89.00  E-value=0.3  Score=51.08  Aligned_cols=35  Identities=34%  Similarity=0.290  Sum_probs=29.5

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      |+ |.=+.+-+||..|+.|..|.||||+++||+--.
T Consensus       133 ~I-D~l~pigkGQR~gIfa~~G~GKt~Ll~~~~~~~  167 (461)
T PRK12597        133 VI-DLLCPIAKGGKTGLFGGAGVGKTVLMMELIFNI  167 (461)
T ss_pred             ee-cccCccccCCEEEeecCCCCChhHHHHHHHHHH
Confidence            44 445789999999999999999999999987533

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=88.98  E-value=11  Score=41.22  Aligned_cols=95  Identities=21%  Similarity=0.226  Sum_probs=60.2

Q ss_pred             HHHHHHHhHHHHHHHhCc-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCchHHHHHHHHHHHHHHHHHHHH
Q 011717          137 LVTEKELKLRQVMTMMGL-YDSAYWLSWLTWEGTLVLLSSLFIVIFGMMFQFDFFLNNSFAVLFLLFFLFELNMTGFAFM  215 (479)
Q Consensus       137 iV~EKe~klke~m~~mGl-~~~~yWls~fi~~~~~~~i~~~~~ii~~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~~~  215 (479)
                      ...||..=.||...  |. +.++|.+|+.+.++...++..++.+.+.+....---....+....+..++..+....++.+
T Consensus       412 f~~e~~~f~rE~~~--~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~  489 (613)
T KOG0061|consen  412 FPQERPIFLRETSS--GLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLF  489 (613)
T ss_pred             hHHHHHHHHHHHhc--CchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555554432  32 5689999999998888888776665544333211111123444445566777888899999


Q ss_pred             HHHhcCCchhhhHHHHHH
Q 011717          216 FSAFISKSSSSTTIGFSV  233 (479)
Q Consensus       216 ~S~fF~~~~~a~~~~~~~  233 (479)
                      ++..+.+...|.+++..+
T Consensus       490 i~~~~~~~~~a~~~~~~~  507 (613)
T KOG0061|consen  490 ISAIVPNLSLATSLGPVL  507 (613)
T ss_pred             HHHhccchhheeehHHHH
Confidence            999999877776655443

>PF03379 CcmB: CcmB protein; InterPro: IPR003544 Within mitochondria and bacteria, a family of related proteins is involved in the assembly of periplasmic c-type cytochromes: these include CycK [], CcmF [,], NrfE [] and CcbS []

Probab=88.83  E-value=21  Score=33.51  Aligned_cols=86  Identities=21%  Similarity=0.304  Sum_probs=52.3

Q ss_pred             HHHHHHHHHhHHHHHHHhCcChhHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcccccccCchHHHHHHHHHHHHHHHHHH
Q 011717          135 SSLVTEKELKLRQVMTMMGLYDSAYWLSWLTWEGTLVLLSSLFIVIF-GMMFQFDFFLNNSFAVLFLLFFLFELNMTGFA  213 (479)
Q Consensus       135 ~~iV~EKe~klke~m~~mGl~~~~yWls~fi~~~~~~~i~~~~~ii~-~~~~~~~~f~~~~~~~l~ll~~l~g~s~i~~~  213 (479)
                      +...+|+|++.-|.+++.+.+..++|++-.+...+...+..++...+ ...++.+.   .+...+.+.+++-+++....+
T Consensus        66 r~f~~E~e~G~L~~l~l~~~~~~~i~l~K~l~~~~~~~~~~~i~~pl~~~l~~~~~---~~~~~~~~~l~lgt~gl~~ig  142 (215)
T PF03379_consen   66 RSFAREYEDGTLEQLLLSPVPRSAIFLGKLLANWLLLFLPELIIFPLFALLFNLPI---SSWPLLLLSLLLGTLGLAAIG  142 (215)
T ss_pred             HhHHHHHhCCcHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHhHHHHHHH
Confidence            34679999999999999999999999999888877776665444332 23333221   223333333333334444444


Q ss_pred             HHHHHhcCCc
Q 011717          214 FMFSAFISKS  223 (479)
Q Consensus       214 ~~~S~fF~~~  223 (479)
                      =+.|.+-.+.
T Consensus       143 tl~aal~~~~  152 (215)
T PF03379_consen  143 TLLAALAAGA  152 (215)
T ss_pred             HHHHHHHHhc
Confidence            4444443333

These proteins may play a role in guidance of apocytochromes and haem groups for their covalent linkage by the cytochrome-c-haem lyase. Members of the family are probably integral membrane proteins, with up to 16 predicted transmembrane (TM) helices. The gene products of the hel and ccl loci have been shown to be required specifically for the biogenesis of c-type cytochromes in the Gram-negative photosynthetic bacterium Rhodobacter capsulatus []. Genetic and molecular analyses show that the hel locus contains at least 4 genes, helA, helB, helC and orf52. HelA is similar to the ABC transporters and helA, helB, and helC are proposed to encode an export complex []. It is believed that the hel-encoded proteins are required for the export of haem to the periplasm, where it is subsequently ligated to the c-type apocytochromes []. However, while CcmB and CcmC have the potential to interact with CcmA, the 3 gene products probably associating to form a complex with (CcmA)2-CcmB-CcmC stoichiometry, the substrate for the putative CcmABC-transporter is probably neither haem nor c-type apocytochromes []. Hydropathy analysis suggests the presence of 6 TM domains.; GO: 0015232 heme transporter activity, 0015886 heme transport, 0017004 cytochrome complex assembly, 0016020 membrane

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=88.82  E-value=0.42  Score=43.23  Aligned_cols=25  Identities=20%  Similarity=0.252  Sum_probs=22.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      -..+++|.-++||||++|.|+|-..
T Consensus       118 ~~~~~vG~pnvGKSslin~l~~~~~  142 (172)
T cd04178         118 ITVGVVGFPNVGKSSLINSLKRSRA  142 (172)
T ss_pred             cEEEEEcCCCCCHHHHHHHHhCccc
Confidence            3578999999999999999999654

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=88.80  E-value=0.36  Score=48.99  Aligned_cols=23  Identities=39%  Similarity=0.567  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .++|+|..+|||||+++.|+|..
T Consensus       191 ~ValvG~~NvGKSSLln~L~~~~  213 (351)
T TIGR03156       191 TVALVGYTNAGKSTLFNALTGAD  213 (351)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            57899999999999999999953

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>PLN02772 guanylate kinase

Probab=88.80  E-value=0.43  Score=48.65  Aligned_cols=26  Identities=38%  Similarity=0.538  Sum_probs=22.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      .++.|.||.|+||+|+++.|....+.
T Consensus       136 k~iVlsGPSGvGKsTL~~~L~~~~p~  161 (398)
T PLN02772        136 KPIVISGPSGVGKGTLISMLMKEFPS  161 (398)
T ss_pred             cEEEEECCCCCCHHHHHHHHhhhccc
Confidence            58899999999999999999876644

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=88.74  E-value=0.29  Score=51.03  Aligned_cols=29  Identities=28%  Similarity=0.363  Sum_probs=23.6

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      .++.-+.|.|++|.||||+.+.+++....
T Consensus       215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~  243 (438)
T PTZ00361        215 KPPKGVILYGPPGTGKTLLAKAVANETSA  243 (438)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            34455779999999999999999987543

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=88.68  E-value=0.41  Score=48.66  Aligned_cols=29  Identities=28%  Similarity=0.550  Sum_probs=21.8

Q ss_pred             EEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          450 FCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +|+.|..||||||++|-|-|+-.-+.|.|
T Consensus        38 IaV~G~sGsGKSSfINalrGl~~~d~~aA   66 (376)
T PF05049_consen   38 IAVTGESGSGKSSFINALRGLGHEDEGAA   66 (376)
T ss_dssp             EEEEESTTSSHHHHHHHHTT--TTSTTS-
T ss_pred             EEEECCCCCCHHHHHHHHhCCCCCCcCcC
Confidence            47889999999999999999755555543

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=88.67  E-value=0.37  Score=46.18  Aligned_cols=22  Identities=41%  Similarity=0.693  Sum_probs=18.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHhC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      -++|+-|+-||||||++.-|.-
T Consensus        30 ~~iGiTG~PGaGKSTli~~l~~   51 (266)
T PF03308_consen   30 HVIGITGPPGAGKSTLIDALIR   51 (266)
T ss_dssp             EEEEEEE-TTSSHHHHHHHHHH
T ss_pred             eEEEeeCCCCCcHHHHHHHHHH
Confidence            3789999999999999998764

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PRK10867 signal recognition particle protein; Provisional

Probab=88.36  E-value=0.43  Score=49.65  Aligned_cols=24  Identities=38%  Similarity=0.511  Sum_probs=20.3

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhCC
Q 011717          447 DQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       447 gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ..++.+.|++|+|||||.--|+..
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~~  123 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAKY  123 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHH
Confidence            468999999999999998777653

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=88.16  E-value=0.72  Score=47.49  Aligned_cols=34  Identities=29%  Similarity=0.329  Sum_probs=26.5

Q ss_pred             eeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       439 ~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      .+-|.++-=-=+||+|..+|||||++|.|++.-+
T Consensus       151 ~~~lelk~iadValVG~PNaGKSTLln~Lt~~k~  184 (390)
T PRK12298        151 ELKLELKLLADVGLLGLPNAGKSTFIRAVSAAKP  184 (390)
T ss_pred             EEEEeeeccccEEEEcCCCCCHHHHHHHHhCCcc
Confidence            4445444444599999999999999999998643

>cd01859 MJ1464 MJ1464

Probab=88.10  E-value=0.67  Score=40.81  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      ...++|.+|+||||+++-|.|..
T Consensus       103 ~~~~ig~~~~Gkssl~~~l~~~~  125 (156)
T cd01859         103 KVGVVGYPNVGKSSIINALKGRH  125 (156)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            44999999999999999999843

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>cd01856 YlqF YlqF

Probab=88.02  E-value=0.6  Score=41.97  Aligned_cols=24  Identities=29%  Similarity=0.328  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      -.++++|..|+||||+++.|+|..
T Consensus       116 ~~~~~~G~~~vGKstlin~l~~~~  139 (171)
T cd01856         116 IRAMVVGIPNVGKSTLINRLRGKK  139 (171)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            367899999999999999999844

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01855 YqeH YqeH

Probab=88.01  E-value=0.43  Score=43.64  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=22.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ++..++++|..|+||||++|.|.+.
T Consensus       126 ~~~~~~~~G~~nvGKStliN~l~~~  150 (190)
T cd01855         126 KGGDVYVVGATNVGKSTLINALLKK  150 (190)
T ss_pred             cCCcEEEEcCCCCCHHHHHHHHHHh
Confidence            5567889999999999999999984

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=87.98  E-value=0.49  Score=47.65  Aligned_cols=32  Identities=28%  Similarity=0.267  Sum_probs=25.1

Q ss_pred             eeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       439 ~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .+-|.++-=-=+||+|..+|||||+++.||+-
T Consensus       150 ~~~lelk~~adVglVG~PNaGKSTLln~ls~a  181 (335)
T PRK12299        150 WLRLELKLLADVGLVGLPNAGKSTLISAVSAA  181 (335)
T ss_pred             EEEEEEcccCCEEEEcCCCCCHHHHHHHHHcC
Confidence            34444444445899999999999999999984

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=87.94  E-value=0.46  Score=48.49  Aligned_cols=31  Identities=29%  Similarity=0.348  Sum_probs=27.1

Q ss_pred             eeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       439 ~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      |+=+-+-+||--++.|+-|+||||+++.|.-
T Consensus       161 D~l~PIGkGQR~lIvgppGvGKTTLaK~Ian  191 (416)
T PRK09376        161 DLIAPIGKGQRGLIVAPPKAGKTVLLQNIAN  191 (416)
T ss_pred             eeecccccCceEEEeCCCCCChhHHHHHHHH
Confidence            3446788999999999999999999998764

>TIGR01039 atpD ATP synthase, F1 beta subunit

Probab=87.92  E-value=0.39  Score=50.05  Aligned_cols=33  Identities=36%  Similarity=0.419  Sum_probs=28.4

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      |+| .=+.+-+||..++.|..|.||||++.|++-
T Consensus       133 aID-~l~pig~GQr~~If~~~G~GKt~L~~~~~~  165 (461)
T TIGR01039       133 VID-LLAPYAKGGKIGLFGGAGVGKTVLIQELIN  165 (461)
T ss_pred             eec-ccCCcccCCEEEeecCCCCChHHHHHHHHH
Confidence            444 447888999999999999999999999864

The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.

>cd01379 MYSc_type_III Myosin motor domain, type III myosins

Probab=87.84  E-value=0.38  Score=52.76  Aligned_cols=29  Identities=28%  Similarity=0.395  Sum_probs=25.4

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      ...++|+..+.|..||||||+.++|..-+
T Consensus        82 ~~~~~QsIiisGESGsGKTet~K~l~~yL  110 (653)
T cd01379          82 TYNQDQCIVISGESGSGKTESAHLLVQQL  110 (653)
T ss_pred             hcCCCceEEEecCCCCCchHHHHHHHHHH
Confidence            44678999999999999999999988754

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the

>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]

Probab=87.51  E-value=0.4  Score=53.81  Aligned_cols=21  Identities=43%  Similarity=0.668  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 011717          449 LFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG  469 (479)
                      -+.++|+.||||||++++|.-
T Consensus       438 hT~I~G~tGaGKTvLl~~lla  458 (796)
T COG3451         438 HTLIIGPTGAGKTVLLSFLLA  458 (796)
T ss_pred             CeEEECCCCCCHHHHHHHHHH
Confidence            788999999999999999864

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=87.19  E-value=0.49  Score=49.59  Aligned_cols=26  Identities=15%  Similarity=0.318  Sum_probs=22.6

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .+|--++++|+.|+||||+++.|+|.
T Consensus       201 ~~g~kVvIvG~~nvGKSSLiN~L~~~  226 (442)
T TIGR00450       201 DDGFKLAIVGSPNVGKSSLLNALLKQ  226 (442)
T ss_pred             hcCCEEEEECCCCCcHHHHHHHHhCC
Confidence            34556889999999999999999985

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=86.88  E-value=0.58  Score=47.00  Aligned_cols=34  Identities=26%  Similarity=0.279  Sum_probs=27.3

Q ss_pred             eeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       438 ~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      +.+.|.++-=-=++|+|..+|||||+++.|++-.
T Consensus       148 ~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~  181 (329)
T TIGR02729       148 RWLRLELKLLADVGLVGLPNAGKSTLISAVSAAK  181 (329)
T ss_pred             EEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCC
Confidence            4455666555568999999999999999999853

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=86.84  E-value=0.54  Score=46.51  Aligned_cols=23  Identities=26%  Similarity=0.598  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .+.++|.-|+|||||+|.|+|..
T Consensus        40 rIllvGktGVGKSSliNsIlG~~   62 (313)
T TIGR00991        40 TILVMGKGGVGKSSTVNSIIGER   62 (313)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            35699999999999999999964

>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=86.78  E-value=0.38  Score=53.49  Aligned_cols=17  Identities=35%  Similarity=0.970  Sum_probs=15.5

Q ss_pred             EECCCCCcHHHHHHHHh
Q 011717          452 LLGPNGAGKTTTISCLT  468 (479)
Q Consensus       452 LLG~NGAGKTTt~~mLt  468 (479)
                      ++||||+||||...-|+
T Consensus        47 IiGpNGSGKSSiVcAIc   63 (1072)
T KOG0979|consen   47 IIGPNGSGKSSIVCAIC   63 (1072)
T ss_pred             EECCCCCCchHHHHHHH
Confidence            78999999999998775

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=86.69  E-value=0.46  Score=48.50  Aligned_cols=27  Identities=22%  Similarity=0.245  Sum_probs=22.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      ++-.+.+-|+.|+|||||++.|.....
T Consensus       148 ~~GlilI~G~TGSGKTT~l~al~~~i~  174 (372)
T TIGR02525       148 AAGLGLICGETGSGKSTLAASIYQHCG  174 (372)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            344677899999999999999987653

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PRK09280 F0F1 ATP synthase subunit beta; Validated

Probab=86.68  E-value=0.48  Score=49.53  Aligned_cols=33  Identities=36%  Similarity=0.419  Sum_probs=28.3

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      |+| .=+.+-+||..++.|..|.||||++.|++-
T Consensus       134 aID-~l~pigkGQR~gIfa~~GvGKt~Ll~~i~~  166 (463)
T PRK09280        134 VID-LLAPYAKGGKIGLFGGAGVGKTVLIQELIN  166 (463)
T ss_pred             eec-ccCCcccCCEEEeecCCCCChhHHHHHHHH
Confidence            444 457889999999999999999999999854

>PRK11058 GTPase HflX; Provisional

Probab=86.59  E-value=0.57  Score=48.82  Aligned_cols=22  Identities=32%  Similarity=0.416  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .++|+|..+|||||++|.|+|.
T Consensus       199 ~ValVG~~NaGKSSLlN~Lt~~  220 (426)
T PRK11058        199 TVSLVGYTNAGKSTLFNRITEA  220 (426)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4689999999999999999994

>PRK13830 conjugal transfer protein TrbE; Provisional

Probab=86.57  E-value=0.85  Score=51.69  Aligned_cols=34  Identities=21%  Similarity=0.356  Sum_probs=26.1

Q ss_pred             eEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       440 lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      +++.+...--+.++|+.|+||||+++.|++....
T Consensus       449 ~n~h~~d~g~~~i~G~tGsGKS~l~~~l~~~~~~  482 (818)
T PRK13830        449 LNLHVDDVGHTLIFGPTGSGKSTLLALIAAQFRR  482 (818)
T ss_pred             EEEEECCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence            3444444347899999999999999999887554

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=86.51  E-value=0.43  Score=47.72  Aligned_cols=26  Identities=23%  Similarity=0.291  Sum_probs=22.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .+.-+.+-|+-|+||||+++-|.+..
T Consensus       143 ~~~nilI~G~tGSGKTTll~aL~~~i  168 (323)
T PRK13833        143 SRLNIVISGGTGSGKTTLANAVIAEI  168 (323)
T ss_pred             cCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34456799999999999999999876

>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain

Probab=86.31  E-value=0.5  Score=45.93  Aligned_cols=34  Identities=21%  Similarity=0.276  Sum_probs=28.5

Q ss_pred             eeeeEEEEeCCcEEEEECCCCCcHHHH-HHHHhCC
Q 011717          437 IKGLWVNIAKDQLFCLLGPNGAGKTTT-ISCLTGI  470 (479)
Q Consensus       437 V~~lsl~v~~gei~~LLG~NGAGKTTt-~~mLtG~  470 (479)
                      +=|+-+.+-+||..++.|+-|+||||+ +.+|...
T Consensus        59 ~ID~l~pigrGQr~~Ifg~~g~GKt~L~l~~i~~~   93 (274)
T cd01132          59 AIDAMIPIGRGQRELIIGDRQTGKTAIAIDTIINQ   93 (274)
T ss_pred             EeeccCCcccCCEEEeeCCCCCCccHHHHHHHHHh
Confidence            444557899999999999999999999 7888643

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.

>PRK15455 PrkA family serine protein kinase; Provisional

Probab=86.23  E-value=0.55  Score=50.21  Aligned_cols=31  Identities=42%  Similarity=0.650  Sum_probs=25.3

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      |+.+++   .+++|+.|+||-|+||||+-+.|..
T Consensus        95 Aa~gl~---~~~~IL~LvGPpG~GKSsLa~~la~  125 (644)
T PRK15455         95 AAQGLE---EKKQILYLLGPVGGGKSSLAERLKS  125 (644)
T ss_pred             HHHhcC---CCCceEEEecCCCCCchHHHHHHHH
Confidence            455553   3678999999999999999999874

>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]

Probab=86.16  E-value=0.15  Score=50.38  Aligned_cols=31  Identities=32%  Similarity=0.457  Sum_probs=25.7

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHH
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS  465 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~  465 (479)
                      ..+|.+==+-.+||.+.|-||.|+||||.++
T Consensus       261 pvLNk~LkGhR~GElTvlTGpTGsGKTTFls  291 (514)
T KOG2373|consen  261 PVLNKYLKGHRPGELTVLTGPTGSGKTTFLS  291 (514)
T ss_pred             hHHHHHhccCCCCceEEEecCCCCCceeEeh
Confidence            4455555567899999999999999999876

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=86.09  E-value=0.67  Score=48.34  Aligned_cols=26  Identities=42%  Similarity=0.488  Sum_probs=21.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      +..++.+.|++|+|||||..-|+..+
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L  119 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYF  119 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence            45688999999999999998876533

>CHL00189 infB translation initiation factor 2; Provisional

Probab=85.97  E-value=0.65  Score=51.54  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=21.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      +.-+++++||.|+||||+++.|++.
T Consensus       243 r~p~V~IvGhvdvGKTSLld~L~~~  267 (742)
T CHL00189        243 RPPIVTILGHVDHGKTTLLDKIRKT  267 (742)
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHhc
Confidence            3457899999999999999999864

>COG0802 Predicted ATPase or kinase [General function prediction only]

Probab=85.92  E-value=0.77  Score=40.23  Aligned_cols=24  Identities=33%  Similarity=0.448  Sum_probs=21.5

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHh
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      .+|.|+.|=|.=||||||+-+-|.
T Consensus        23 ~~g~Vv~L~GdLGAGKTtf~rgi~   46 (149)
T COG0802          23 KAGDVVLLSGDLGAGKTTLVRGIA   46 (149)
T ss_pred             CCCCEEEEEcCCcCChHHHHHHHH
Confidence            688999999999999999988664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	479
1ji0_A	240	Crystal Structure Analysis Of The Abc Transporter F		6e-05

>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
           HAIKG+ + + + Q+  L+G NGAGKTTT+S + G+     G
Sbjct: 20  HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	479
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	1e-12
1sgw_A	214	Putative ABC transporter; structural genomics, P p	1e-11
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	1e-09
1ji0_A	240	ABC transporter; ATP binding protein, structural g	3e-08
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	6e-08
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	1e-07
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	1e-07
1g6h_A	257	High-affinity branched-chain amino acid transport	2e-07
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	4e-07
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	2e-06
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	2e-06
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	1e-05
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	6e-05
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	1e-04
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	7e-05
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	2e-04
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	2e-04
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	3e-04
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	3e-04
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	4e-04
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	6e-04
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	6e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	8e-04

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256

 Score = 66.8 bits (164), Expect = 1e-12
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 15/72 (20%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
           AV ++ L K                      +KG+   I + ++F L+GPNGAGKTTT+ 
Sbjct: 15  AVVVKDLRKRIGKKE---------------ILKGISFEIEEGEIFGLIGPNGAGKTTTLR 59

Query: 466 CLTGITPVTGGD 477
            ++ +   + G 
Sbjct: 60  IISTLIKPSSGI 71

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 16/72 (22%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            ++IR L   +                    ++ + + I K  +    GPNG GKTT + 
Sbjct: 10  KLEIRDLSVGYDKP----------------VLERITMTIEKGNVVNFHGPNGIGKTTLLK 53

Query: 466 CLTGITPVTGGD 477
            ++       G+
Sbjct: 54  TISTYLKPLKGE 65

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279

 Score = 58.0 bits (141), Expect = 1e-09
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 401 PDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGK 460
              ++ +Q+  + +   G                  +K +   IAK   + L G NGAGK
Sbjct: 16  RGSHMLIQLDQIGRMKQGKT---------------ILKKISWQIAKGDKWILYGLNGAGK 60

Query: 461 TTTISCLTGITPVTGGD 477
           TT ++ L    P T G 
Sbjct: 61  TTLLNILNAYEPATSGT 77

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240

 Score = 53.2 bits (129), Expect = 3e-08
 Identities = 19/43 (44%), Positives = 28/43 (65%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           HAIKG+ + + + Q+  L+G NGAGKTTT+S + G+     G 
Sbjct: 20  HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359

 Score = 53.3 bits (129), Expect = 6e-08
 Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 15/71 (21%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
           A+ I  L K+F  T                 +  + +++   ++  ++G +G GKTT + 
Sbjct: 4   ALHIGHLSKSFQNTP---------------VLNDISLSLDPGEILFIIGASGCGKTTLLR 48

Query: 466 CLTGITPVTGG 476
           CL G      G
Sbjct: 49  CLAGFEQPDSG 59

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355

 Score = 52.6 bits (127), Expect = 1e-07
 Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 14/81 (17%)

Query: 397 RESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPN 456
                  ++ ++  G+ K +PG                 +++G+   I + ++  LLGP+
Sbjct: 5   HHHHHHGSMTIEFVGVEKIYPGG--------------ARSVRGVSFQIREGEMVGLLGPS 50

Query: 457 GAGKTTTISCLTGITPVTGGD 477
           G+GKTT +  + G+   T GD
Sbjct: 51  GSGKTTILRLIAGLERPTKGD 71

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 12/69 (17%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +Q++ +  T  G           K     +++ + + +   +   +LGPNG+GKTT +  
Sbjct: 2   IQLKNVGITLSG-----------KGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRA 49

Query: 467 LTGITPVTG 475
           ++G+ P +G
Sbjct: 50  ISGLLPYSG 58

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 15/70 (21%)

Query: 408 QIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL 467
           +   +VK F   +               A+ G+ +++ K  +  ++GPNG+GK+T I+ +
Sbjct: 9   RTENIVKYFGEFK---------------ALDGVSISVNKGDVTLIIGPNGSGKSTLINVI 53

Query: 468 TGITPVTGGD 477
           TG      G 
Sbjct: 54  TGFLKADEGR 63

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 14/73 (19%)

Query: 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTT 463
           N A+ +  L   +     +               + L  ++ K  +  +LG NG GK+T 
Sbjct: 2   NKALSVENLGFYYQAENFL--------------FQQLNFDLNKGDILAVLGQNGCGKSTL 47

Query: 464 ISCLTGITPVTGG 476
           +  L GI     G
Sbjct: 48  LDLLLGIHRPIQG 60

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249

 Score = 47.9 bits (115), Expect = 2e-06
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475
           +  L   +   ++  L+GPNGAGK+T ++ + G+T   G
Sbjct: 16  LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKG 54

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348

 Score = 48.3 bits (116), Expect = 2e-06
 Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 16/71 (22%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++I  L + +                   ++  L + +   + F +LGP GAGKT  +  
Sbjct: 2   IEIESLSRKWKNF----------------SLDNLSLKVESGEYFVILGPTGAGKTLFLEL 45

Query: 467 LTGITPVTGGD 477
           + G      G 
Sbjct: 46  IAGFHVPDSGR 56

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 18/73 (24%), Positives = 33/73 (45%), Gaps = 13/73 (17%)

Query: 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
           V + ++ + K F                   A+  + +NI   + F +LGP+GAGKTT +
Sbjct: 2   VRIIVKNVSKVFKK-------------GKVVALDNVNINIENGERFGILGPSGAGKTTFM 48

Query: 465 SCLTGITPVTGGD 477
             + G+   + G+
Sbjct: 49  RIIAGLDVPSTGE 61

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 20/120 (16%), Positives = 34/120 (28%), Gaps = 8/120 (6%)

Query: 357 GNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIRESIPDPNVAVQIRGLVKTF 416
           G     G +          E I    +  +  EN+  +   E++              + 
Sbjct: 296 GVPSVYGVV---TLPASVREGINIFLDGHIPAENL--RFRTEALQFRIADATEDLQNDSA 350

Query: 417 PGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
                     K Q       +       +  ++  ++G NG GKTT I  L G      G
Sbjct: 351 SRAFSYPSLKKTQGD---FVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEG 407

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 24/80 (30%)

Query: 422 IGCCCKCQKTSPYHA--IKGLWVNIAKD---------------------QLFCLLGPNGA 458
           IGC   C K  P+ A  I  L  N+                        Q+  L+G NG 
Sbjct: 56  IGCGI-CVKKCPFDAIQIINLPTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGI 114

Query: 459 GKTTTISCLTGITPVTGGDG 478
           GK+T +  L G      G  
Sbjct: 115 GKSTALKILAGKQKPNLGRF 134

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 386 LEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIA 445
           L++EN+   + R          +   + +            +  K      ++     I 
Sbjct: 329 LKDENV---RFRPYEIRFTKLSERVDVERETLVEYP-----RLVKDYGSFKLEVEPGEIR 380

Query: 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           K ++  ++GPNG GKTT +  L G+   T G 
Sbjct: 381 KGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 412

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 15/71 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  +VK F                   A+  + + I   +   LLGP+G+GK+T +  
Sbjct: 4   IKLENIVKKFGNF---------------TALNNINLKIKDGEFMALLGPSGSGKSTLLYT 48

Query: 467 LTGITPVTGGD 477
           + GI   T G 
Sbjct: 49  IAGIYKPTSGK 59

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 16/70 (22%), Positives = 33/70 (47%), Gaps = 11/70 (15%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  + K F            Q T    A+  + +++   Q++ ++G +GAGK+T I C
Sbjct: 25  IKLSNITKVFH-----------QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRC 73

Query: 467 LTGITPVTGG 476
           +  +   T G
Sbjct: 74  VNLLERPTEG 83

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 15/71 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           + +  L K+F                    +KG+ V+I + ++  ++GP+G+GK+T + C
Sbjct: 25  IDVHQLKKSF---------------GSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRC 69

Query: 467 LTGITPVTGGD 477
           L  +     G+
Sbjct: 70  LNLLEDFDEGE 80

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 15/71 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           V++  L K F                   A+  L + I   +   LLGP+G GKTTT+  
Sbjct: 12  VKLENLTKRFGNF---------------TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRM 56

Query: 467 LTGITPVTGGD 477
           + G+   T G 
Sbjct: 57  IAGLEEPTEGR 67

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 15/71 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           V++  + K F                   A++ + + +   +   LLGP+G GKTTT+  
Sbjct: 4   VRLVDVWKVFGEV---------------TAVREMSLEVKDGEFMILLGPSGCGKTTTLRM 48

Query: 467 LTGITPVTGGD 477
           + G+   + G 
Sbjct: 49  IAGLEEPSRGQ 59

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 41.6 bits (97), Expect = 6e-04
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 386 LEEENMVKQQIRESIPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIA 445
              E +    +    P+P     ++   K      K+         +    I  +    +
Sbjct: 641 KAYEELSNTDLEFKFPEPGYLEGVKTKQKAI---VKVTNMEFQYPGTSKPQITDINFQCS 697

Query: 446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGG 476
                 ++GPNGAGK+T I+ LTG    T G
Sbjct: 698 LSSRIAVIGPNGAGKSTLINVLTGELLPTSG 728

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 28/122 (22%), Positives = 38/122 (31%), Gaps = 10/122 (8%)

Query: 357 GNKIEEGSICSCVGSVPPMEHITPDDEDVLEEENMVKQQIR-ESIPDPNVAVQIRGLVKT 415
           G     G + S   +     +        L  ENM   +IR + I      V    L K 
Sbjct: 212 GESSVYGRV-SKSYAARVGINNFLKGY--LPAENM---KIRPDEIKFMLKEVSDLDLSKD 265

Query: 416 FPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475
                K     K  K      +        + ++  +LGPNG GKTT    L G      
Sbjct: 266 LKTKMKWT---KIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADE 322

Query: 476 GD 477
           G 
Sbjct: 323 GS 324

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.0 bits (95), Expect = 8e-04
 Identities = 73/548 (13%), Positives = 142/548 (25%), Gaps = 193/548 (35%)

Query: 10  PSSKVMSF-RTAAEVD-DWLYSNPMRCPGALHFVDRNAT--TISYGIQTNSTPIEMRGR- 64
               V  F      ++  +L S        +    R  +  T  Y        IE R R 
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMS-------PIKTEQRQPSMMTRMY--------IEQRDRL 119

Query: 65  YED-PTF-KFQIP------------LQLAAEREIARSLVGDPNF--SWVVG--LKEFA-- 104
           Y D   F K+ +             L+L   + +   + G      +WV       +   
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQ 177

Query: 105 -HPPGEIF------------------SAVARIGPTFFLAVAMFGFVFQISSLVTEKELKL 145
                +IF                    + +I P +    +       I   +   + +L
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW---TSRSDHSSNIKLRIHSIQAEL 234

Query: 146 RQVMTMMGLYDSAY------WLSWLTWEG------TLVL---------LSSLFIVIFGMM 184
           R+++     Y++          +   W         L+          LS+       + 
Sbjct: 235 RRLLKSK-PYENCLLVLLNVQNAK-AWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292

Query: 185 FQFDFFLNNSFAVLFLLFFLFELNM----------TGFAF---MFSAFISKSSS------ 225
                   +    L L +    L+           T       + +  I    +      
Sbjct: 293 HHSMTLTPDEVKSLLLKY----LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348

Query: 226 -STTIGFSVFIVGFLTQLVTAFGFPYSDQFSNTYRTIWSLFPPNLL--AEALQLL--SDA 280
                  +  I   L  L          ++   +  + S+FPP+       L L+     
Sbjct: 349 HVNCDKLTTIIESSLNVL-------EPAEYRKMFDRL-SVFPPSAHIPTILLSLIWFDVI 400

Query: 281 TETPQDIGISWSRRAECAPNDTECVITINDIYIWLVAT--------------------FF 320
                 +     + +       E  I+I  IY+ L                       F 
Sbjct: 401 KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFD 460

Query: 321 VWFILAIYLDNII--------PNAAGVRKST--------FYFLKPGYWTGKGGNKIE-EG 363
              ++  YLD            N     + T        F FL+          KI  + 
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE---------QKIRHDS 511

Query: 364 SICSCVGSVPPM--------EHITPDD-------EDVLE-----EENMVKQQ----IRES 399
           +  +  GS+            +I  +D         +L+     EEN++  +    +R +
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571

Query: 400 IPDPNVAV 407
           +   + A+
Sbjct: 572 LMAEDEAI 579

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 430 KTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           K      ++     I K ++  ++GPNG GKTT +  L G+   T G 
Sbjct: 295 KDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGK 342

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	479
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	99.57
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	99.57
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	99.56
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	99.55
1g6h_A	257	High-affinity branched-chain amino acid transport	99.55
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	99.55
1ji0_A	240	ABC transporter; ATP binding protein, structural g	99.54
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	99.54
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	99.54
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	99.54
1b0u_A	262	Histidine permease; ABC transporter, transport pro	99.54
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	99.53
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	99.52
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.51
1sgw_A	214	Putative ABC transporter; structural genomics, P p	99.51
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.5
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	99.5
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	99.5
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	99.49
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	99.49
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.49
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	99.48
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.48
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	99.48
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.48
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	99.47
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	99.47
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	99.46
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	99.46
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.41
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	99.4
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.39
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.38
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.34
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.27
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.24
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.24
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.23
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.22
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.21
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.21
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.2
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.16
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.15
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.15
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.15
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.14
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.01
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.0
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.0
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	98.94
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.93
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	98.86
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.85
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.85
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.82
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.8
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	98.79
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.79
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.74
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	98.74
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.72
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.68
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.68
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	98.68
2og2_A	359	Putative signal recognition particle receptor; nuc	98.6
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.56
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.55
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.52
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.52
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	98.48
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.45
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.43
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	98.39
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.37
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	98.35
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.31
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.29
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.29
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.28
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	98.26
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.22
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	98.21
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.19
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	98.17
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.17
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.13
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.05
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.05
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	98.04
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	98.01
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	98.0
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.99
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.97
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.9
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	97.89
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.89
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.87
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.84
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	97.8
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	97.8
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.76
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.69
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	97.68
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.67
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.64
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.63
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.63
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.6
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.59
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.59
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.51
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.48
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.37
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.33
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.23
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.2
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.19
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.14
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.07
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.96
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.94
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.92
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	96.76
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.75
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.75
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.69
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	96.69
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.54
3ice_A	422	Transcription termination factor RHO; transcriptio	96.47
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.45
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.27
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.19
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	95.91
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	95.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	95.85
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	95.79
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.2
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	94.93
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	94.85
2r6a_A	454	DNAB helicase, replicative helicase; replication,	94.54
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	94.42
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	94.2
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	94.13
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	94.1
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.06
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.84
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	93.58
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	93.22
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	93.14
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	92.6
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	92.38
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	92.31
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	92.26
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	92.16
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	92.11
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	92.02
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	92.0
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	91.92
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	91.86
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	91.68
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	91.64
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	91.3
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	91.19
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	91.03
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	90.99
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	90.96
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	90.9
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	90.84
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	90.83
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	90.68
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	90.38
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	90.19
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	89.86
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	89.65
3bos_A	242	Putative DNA replication factor; P-loop containing	89.59
2z43_A	324	DNA repair and recombination protein RADA; archaea	89.42
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	89.27
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	89.25
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	89.23
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	89.2
2hf9_A	226	Probable hydrogenase nickel incorporation protein	89.05
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	88.99
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	88.84
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	87.63
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	87.55
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	87.3
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	87.18
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	87.08
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	86.68
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	86.49
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	86.35
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	86.33
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	86.06
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	85.9
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	85.86
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	85.6
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	85.59
1u94_A	356	RECA protein, recombinase A; homologous recombinat	85.49
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	85.44
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	85.19
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	85.17
2xxa_A	433	Signal recognition particle protein; protein trans	85.14
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	84.95
3l0o_A	427	Transcription termination factor RHO; helicase, RH	84.75
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	84.54
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	84.45
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	84.39
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	84.02
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	83.75
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	83.63
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	83.53
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	83.42
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	82.78
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	82.76
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	82.56
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	82.36
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	82.28
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	82.24
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	82.18
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	81.9
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	81.7
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	81.05
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	80.37
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	80.34

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=99.57  E-value=1.6e-15  Score=151.45  Aligned_cols=64  Identities=23%  Similarity=0.473  Sum_probs=56.8

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..++++||+|.|+++           ++.+.|++|+||+|++||++||+|+|||||||++++|+|+.+||+|++
T Consensus        22 ~~mi~v~~ls~~y~~~-----------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I   85 (366)
T 3tui_C           22 KHMIKLSNITKVFHQG-----------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV   85 (366)
T ss_dssp             -CCEEEEEEEEEEECS-----------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             CceEEEEeEEEEeCCC-----------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEE
Confidence            4579999999999642           123479999999999999999999999999999999999999999986

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=99.57  E-value=2.6e-15  Score=145.30  Aligned_cols=61  Identities=28%  Similarity=0.474  Sum_probs=55.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..++++||+|.|++.              ..|++|+||++++||++||+|||||||||++++|+|+++|++|+++
T Consensus         6 ~~l~i~~ls~~y~~~--------------~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~   66 (275)
T 3gfo_A            6 YILKVEELNYNYSDG--------------THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL   66 (275)
T ss_dssp             EEEEEEEEEEECTTS--------------CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             cEEEEEEEEEEECCC--------------CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEE
Confidence            479999999999542              1499999999999999999999999999999999999999999863

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=99.56  E-value=2.8e-15  Score=140.98  Aligned_cols=58  Identities=24%  Similarity=0.485  Sum_probs=54.1

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++||+|.|++               ..+++|+||++++||++||+|||||||||++++|+|+.+|++|++
T Consensus         4 ~l~~~~l~~~y~~---------------~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i   61 (224)
T 2pcj_A            4 ILRAENIKKVIRG---------------YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV   61 (224)
T ss_dssp             EEEEEEEEEEETT---------------EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEEEeEEEEECC---------------EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            5899999999953               159999999999999999999999999999999999999999986

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=99.55  E-value=5.1e-15  Score=142.72  Aligned_cols=59  Identities=27%  Similarity=0.441  Sum_probs=55.1

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++||+|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus        10 ~~l~~~~l~~~~~~~---------------~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I   68 (266)
T 4g1u_C           10 ALLEASHLHYHVQQQ---------------ALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGEC   68 (266)
T ss_dssp             CEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEE
T ss_pred             ceEEEEeEEEEeCCe---------------eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence            479999999999532               69999999999999999999999999999999999999999986

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=99.55  E-value=2.9e-15  Score=143.88  Aligned_cols=60  Identities=28%  Similarity=0.506  Sum_probs=55.2

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ...++++||+|.|++.               .+++|+||++++||++||+|||||||||++++|+|+++|++|++
T Consensus         5 ~~~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i   64 (257)
T 1g6h_A            5 MEILRTENIVKYFGEF---------------KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV   64 (257)
T ss_dssp             CEEEEEEEEEEEETTE---------------EEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             CcEEEEeeeEEEECCE---------------eeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            3469999999999531               59999999999999999999999999999999999999999986

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.55  E-value=3.4e-15  Score=143.03  Aligned_cols=59  Identities=34%  Similarity=0.524  Sum_probs=54.9

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++||+|.|++               +.+++++||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus        14 ~~l~i~~l~~~y~~---------------~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I   72 (256)
T 1vpl_A           14 GAVVVKDLRKRIGK---------------KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV   72 (256)
T ss_dssp             CCEEEEEEEEEETT---------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             CeEEEEEEEEEECC---------------EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            56999999999943               159999999999999999999999999999999999999999986

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.54  E-value=4.6e-15  Score=140.97  Aligned_cols=59  Identities=34%  Similarity=0.622  Sum_probs=54.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +.++++||+|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         5 ~~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i   63 (240)
T 1ji0_A            5 IVLEVQSLHVYYGAI---------------HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI   63 (240)
T ss_dssp             EEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             ceEEEEeEEEEECCe---------------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            469999999999531               59999999999999999999999999999999999999999986

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=99.54  E-value=2.9e-15  Score=141.89  Aligned_cols=62  Identities=24%  Similarity=0.464  Sum_probs=54.7

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ++++||+|.|++..           +...|++|+||++++||++||+|||||||||++++|+|+++|++|+++
T Consensus         2 l~~~~l~~~y~~~~-----------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~   63 (235)
T 3tif_A            2 VKLKNVTKTYKMGE-----------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY   63 (235)
T ss_dssp             EEEEEEEEEEEETT-----------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EEEEEEEEEeCCCC-----------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEE
Confidence            68999999995321           123699999999999999999999999999999999999999999863

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=99.54  E-value=4.2e-15  Score=142.95  Aligned_cols=58  Identities=28%  Similarity=0.587  Sum_probs=54.2

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++||+|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus        24 ~l~i~~l~~~y~~~---------------~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I   81 (263)
T 2olj_A           24 MIDVHQLKKSFGSL---------------EVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI   81 (263)
T ss_dssp             SEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             eEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Confidence            59999999999531               59999999999999999999999999999999999999999986

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=99.54  E-value=5.1e-15  Score=143.65  Aligned_cols=60  Identities=32%  Similarity=0.453  Sum_probs=55.3

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ...++++||+|.|++.               .+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus        19 ~~~l~~~~l~~~y~~~---------------~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I   78 (279)
T 2ihy_A           19 HMLIQLDQIGRMKQGK---------------TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV   78 (279)
T ss_dssp             CEEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             CceEEEEeEEEEECCE---------------EEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEE
Confidence            3469999999999531               59999999999999999999999999999999999999999986

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=99.54  E-value=4.9e-15  Score=142.61  Aligned_cols=58  Identities=21%  Similarity=0.473  Sum_probs=54.1

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++||+|.|++.               .+++|+||++++||++||+|||||||||++++|+|+++|++|++
T Consensus         6 ~l~i~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i   63 (262)
T 1b0u_A            6 KLHVIDLHKRYGGH---------------EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI   63 (262)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             eEEEeeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            59999999999531               58999999999999999999999999999999999999999986

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=99.53  E-value=4.7e-15  Score=148.06  Aligned_cols=58  Identities=28%  Similarity=0.578  Sum_probs=54.3

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++||+|.|++.               .|++|+||++++||+++|+|||||||||+++||+|+.+|++|++
T Consensus         4 ~l~i~~ls~~y~~~---------------~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I   61 (359)
T 3fvq_A            4 ALHIGHLSKSFQNT---------------PVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI   61 (359)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             EEEEEeEEEEECCE---------------EEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE
Confidence            58999999999532               69999999999999999999999999999999999999999986

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=99.52  E-value=7.3e-15  Score=147.68  Aligned_cols=59  Identities=25%  Similarity=0.537  Sum_probs=54.5

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .++++||+|.|++.               .||+|+||++++||+++|+|||||||||++++|+|+++|++|+++
T Consensus         3 ~l~~~~l~~~yg~~---------------~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~   61 (381)
T 3rlf_A            3 SVQLQNVTKAWGEV---------------VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLF   61 (381)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             EEEEEeEEEEECCE---------------EEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEE
Confidence            48999999999532               699999999999999999999999999999999999999999863

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.51  E-value=1.4e-14  Score=136.62  Aligned_cols=61  Identities=21%  Similarity=0.325  Sum_probs=55.1

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|++|.|+++             ...+++++||++++||+++|+|||||||||++++|+|+++|++|++
T Consensus         5 ~~l~~~~l~~~y~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   65 (229)
T 2pze_A            5 TEVVMENVTAFWEEG-------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI   65 (229)
T ss_dssp             EEEEEEEEEECSSTT-------------SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             ceEEEEEEEEEeCCC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEE
Confidence            469999999999532             1258999999999999999999999999999999999999999986

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=99.51  E-value=1.1e-14  Score=135.73  Aligned_cols=59  Identities=24%  Similarity=0.382  Sum_probs=54.4

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ...++++||+|.|++                .+++|+||++++||+++|+|+|||||||++++|+|+.+|++|++
T Consensus         8 ~~~l~~~~ls~~y~~----------------~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I   66 (214)
T 1sgw_A            8 GSKLEIRDLSVGYDK----------------PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI   66 (214)
T ss_dssp             -CEEEEEEEEEESSS----------------EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             CceEEEEEEEEEeCC----------------eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence            457999999999942                48999999999999999999999999999999999999999986

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.50  E-value=1.6e-14  Score=137.86  Aligned_cols=61  Identities=13%  Similarity=0.246  Sum_probs=54.5

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      --++++||+|.|++..             ..+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus         6 ~~~~~~~l~~~y~~~~-------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I   66 (247)
T 2ff7_A            6 HDITFRNIRFRYKPDS-------------PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV   66 (247)
T ss_dssp             EEEEEEEEEEESSTTS-------------CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             CceeEEEEEEEeCCCC-------------cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            3589999999994210             158999999999999999999999999999999999999999986

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=99.50  E-value=1.5e-14  Score=138.36  Aligned_cols=59  Identities=25%  Similarity=0.404  Sum_probs=54.2

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++||+|.|+++              ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         4 ~l~i~~l~~~y~~~--------------~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I   62 (253)
T 2nq2_C            4 ALSVENLGFYYQAE--------------NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI   62 (253)
T ss_dssp             EEEEEEEEEEETTT--------------TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEE
T ss_pred             eEEEeeEEEEeCCC--------------CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            58999999999511              158999999999999999999999999999999999999999986

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=99.50  E-value=1.5e-14  Score=144.43  Aligned_cols=60  Identities=30%  Similarity=0.628  Sum_probs=55.6

Q ss_pred             CceEEEecceEEc-CCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTF-PGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y-~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ...++++||+|.| ++.               .+++|+||++++||+++|+|||||||||++++|+|+.+|++|++
T Consensus        12 ~~~l~~~~l~~~y~g~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   72 (355)
T 1z47_A           12 SMTIEFVGVEKIYPGGA---------------RSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV   72 (355)
T ss_dssp             CEEEEEEEEEECCTTST---------------TCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             CceEEEEEEEEEEcCCC---------------EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Confidence            5689999999999 421               58999999999999999999999999999999999999999986

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=99.49  E-value=1.7e-14  Score=144.28  Aligned_cols=58  Identities=34%  Similarity=0.576  Sum_probs=53.9

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++||+|.|++               +.|++|+||++++||+++|+|||||||||++++|+|+++|++|++
T Consensus         3 ~l~~~~l~~~y~~---------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   60 (359)
T 2yyz_A            3 SIRVVNLKKYFGK---------------VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI   60 (359)
T ss_dssp             CEEEEEEEEEETT---------------EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             EEEEEEEEEEECC---------------EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEE
Confidence            3889999999953               159999999999999999999999999999999999999999986

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=99.49  E-value=2e-14  Score=138.69  Aligned_cols=62  Identities=19%  Similarity=0.356  Sum_probs=53.8

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++||+|.|+.+.          ...+.+++|+||++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus         3 l~~~~l~~~y~~~~----------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I   64 (266)
T 2yz2_A            3 IEVVNVSHIFHRGT----------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV   64 (266)
T ss_dssp             EEEEEEEEEESTTS----------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEEEEEEEecCCC----------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence            78999999995210          000259999999999999999999999999999999999999999986

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.49  E-value=2.5e-14  Score=136.17  Aligned_cols=58  Identities=19%  Similarity=0.354  Sum_probs=53.0

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++||+|.|++.              ..+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         2 l~~~~l~~~y~~~--------------~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   59 (243)
T 1mv5_A            2 LSARHVDFAYDDS--------------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI   59 (243)
T ss_dssp             EEEEEEEECSSSS--------------SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE
T ss_pred             EEEEEEEEEeCCC--------------CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            6899999999421              158999999999999999999999999999999999999999986

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=99.48  E-value=2.6e-14  Score=143.13  Aligned_cols=58  Identities=29%  Similarity=0.564  Sum_probs=53.8

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++||+|.|++.               .+++|+||++++||+++|+|||||||||++++|+|+++|++|++
T Consensus         3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   60 (362)
T 2it1_A            3 EIKLENIVKKFGNF---------------TALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI   60 (362)
T ss_dssp             CEEEEEEEEESSSS---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             EEEEEeEEEEECCE---------------EEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEE
Confidence            38999999999431               59999999999999999999999999999999999999999986

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.48  E-value=2.5e-14  Score=135.60  Aligned_cols=60  Identities=20%  Similarity=0.353  Sum_probs=54.2

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++||+|.|++.             ...+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus         3 ~l~~~~l~~~y~~~-------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I   62 (237)
T 2cbz_A            3 SITVRNATFTWARS-------------DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV   62 (237)
T ss_dssp             CEEEEEEEEESCTT-------------SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEE
T ss_pred             eEEEEEEEEEeCCC-------------CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            48999999999531             1158999999999999999999999999999999999999999986

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=99.48  E-value=2.6e-14  Score=143.83  Aligned_cols=58  Identities=28%  Similarity=0.530  Sum_probs=53.9

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++||+|.|++               +.+++|+||++++||+++|+|||||||||++++|+|+++|++|++
T Consensus         3 ~l~~~~l~~~y~~---------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   60 (372)
T 1g29_1            3 GVRLVDVWKVFGE---------------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI   60 (372)
T ss_dssp             EEEEEEEEEEETT---------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             EEEEEeEEEEECC---------------EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEE
Confidence            4899999999953               159999999999999999999999999999999999999999986

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.48  E-value=2.7e-14  Score=138.05  Aligned_cols=62  Identities=26%  Similarity=0.465  Sum_probs=55.2

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++||+|.|++..            ...+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus        15 ~~l~~~~l~~~y~~~~------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I   76 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHP------------NVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV   76 (271)
T ss_dssp             CCEEEEEEEECCTTCT------------TSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             ceEEEEEEEEEeCCCC------------CceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence            3599999999995410            1258999999999999999999999999999999999999999986

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=99.47  E-value=3.1e-14  Score=143.14  Aligned_cols=58  Identities=34%  Similarity=0.615  Sum_probs=54.1

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++||+|.|++               +.+++|+||++++||+++|+|||||||||++++|+|+++|++|++
T Consensus        11 ~l~~~~l~~~y~~---------------~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   68 (372)
T 1v43_A           11 EVKLENLTKRFGN---------------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI   68 (372)
T ss_dssp             CEEEEEEEEEETT---------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             eEEEEEEEEEECC---------------EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEE
Confidence            4899999999953               159999999999999999999999999999999999999999986

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=99.47  E-value=2.5e-14  Score=136.75  Aligned_cols=58  Identities=34%  Similarity=0.546  Sum_probs=53.4

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~--~~pTsG~a  478 (479)
                      .++++||+|.|++.               .+++|+||++++||+++|+|+|||||||++++|+|+  ++|++|++
T Consensus         3 ~l~~~~l~~~y~~~---------------~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I   62 (250)
T 2d2e_A            3 QLEIRDLWASIDGE---------------TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEI   62 (250)
T ss_dssp             EEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEE
T ss_pred             eEEEEeEEEEECCE---------------EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE
Confidence            48899999999531               599999999999999999999999999999999998  89999986

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=99.46  E-value=2e-14  Score=143.76  Aligned_cols=58  Identities=29%  Similarity=0.532  Sum_probs=53.7

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcc--eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYH--AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~--AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++||+|.|++               +.  |++|+||++++||+++|+|||||||||++++|+|+++|++|++
T Consensus         3 ~l~i~~l~~~y~~---------------~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   62 (353)
T 1oxx_K            3 RIIVKNVSKVFKK---------------GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL   62 (353)
T ss_dssp             CEEEEEEEEEEGG---------------GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE
T ss_pred             EEEEEeEEEEECC---------------EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence            3889999999943               15  9999999999999999999999999999999999999999986

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=99.46  E-value=3e-14  Score=137.47  Aligned_cols=59  Identities=29%  Similarity=0.516  Sum_probs=53.2

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC--CCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI--TPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~--~~pTsG~a  478 (479)
                      ..++++||+|.|++               +.+++|+||++++||+++|+|+|||||||++++|+|+  .+|++|++
T Consensus        19 ~~l~~~~l~~~y~~---------------~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I   79 (267)
T 2zu0_C           19 HMLSIKDLHVSVED---------------KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV   79 (267)
T ss_dssp             -CEEEEEEEEEETT---------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEE
T ss_pred             ceEEEEeEEEEECC---------------EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEE
Confidence            35999999999943               1599999999999999999999999999999999998  57999986

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.41  E-value=1.6e-13  Score=134.47  Aligned_cols=60  Identities=18%  Similarity=0.340  Sum_probs=55.2

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++||++.|++.              ..+++|+||++++||++||+|+|||||||++++|+|+++|++|++
T Consensus        52 ~~i~~~~vs~~y~~~--------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I  111 (306)
T 3nh6_A           52 GRIEFENVHFSYADG--------------RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI  111 (306)
T ss_dssp             CCEEEEEEEEESSTT--------------CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEE
T ss_pred             CeEEEEEEEEEcCCC--------------CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEE
Confidence            469999999999532              158999999999999999999999999999999999999999986

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=99.40  E-value=1.2e-13  Score=132.68  Aligned_cols=59  Identities=24%  Similarity=0.486  Sum_probs=51.5

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++||+|.|++..           ....+++++||+++ ||+++|+|+|||||||++++|+|+. |++|++
T Consensus         2 l~~~~l~~~y~~~~-----------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I   60 (263)
T 2pjz_A            2 IQLKNVGITLSGKG-----------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNI   60 (263)
T ss_dssp             EEEEEEEEEEEEET-----------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEE
T ss_pred             EEEEEEEEEeCCCC-----------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEE
Confidence            68999999995310           01258999999999 9999999999999999999999999 999986

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.39  E-value=2.6e-13  Score=130.38  Aligned_cols=61  Identities=21%  Similarity=0.317  Sum_probs=53.5

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++||+|.|++..            ...+++|+||++++||+++|+|+|||||||++++|+|+++| +|++
T Consensus        16 ~~l~i~~l~~~y~~~~------------~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I   76 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQT------------NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDI   76 (260)
T ss_dssp             CCEEEEEEEECCTTCC------------SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEE
T ss_pred             CeEEEEEEEEEeCCCC------------cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEE
Confidence            3599999999995421            12589999999999999999999999999999999999987 7976

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.38  E-value=2.7e-13  Score=137.18  Aligned_cols=61  Identities=21%  Similarity=0.338  Sum_probs=54.3

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ...++++||+|.|++.             ...||+|+||+|++||+++|+|||||||||+++||+|+++ ++|++
T Consensus        17 ~~~i~~~~l~~~y~~~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I   77 (390)
T 3gd7_A           17 GGQMTVKDLTAKYTEG-------------GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEI   77 (390)
T ss_dssp             SCCEEEEEEEEESSSS-------------SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEE
T ss_pred             CCeEEEEEEEEEecCC-------------CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEE
Confidence            3469999999999532             1269999999999999999999999999999999999998 99986

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.34  E-value=3.3e-13  Score=131.48  Aligned_cols=57  Identities=23%  Similarity=0.314  Sum_probs=43.2

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++||++.+  .               .+++|+||++++||+++|+|+|||||||++++|+|+++|++|++
T Consensus        39 ~~l~~~~l~~~~--~---------------~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I   95 (290)
T 2bbs_A           39 DSLSFSNFSLLG--T---------------PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI   95 (290)
T ss_dssp             -----------C--C---------------CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEE
T ss_pred             ceEEEEEEEEcC--c---------------eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence            468999998853  1               48999999999999999999999999999999999999999986

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.27  E-value=8e-14  Score=123.58  Aligned_cols=44  Identities=27%  Similarity=0.127  Sum_probs=42.0

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .|++++||++++||+++|+|+|||||||++++|+|++ |++|++.
T Consensus        21 ~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~   64 (158)
T 1htw_A           21 FAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVK   64 (158)
T ss_dssp             HHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCC
T ss_pred             HHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEE
Confidence            6999999999999999999999999999999999999 9999873

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.24  E-value=4.1e-12  Score=135.84  Aligned_cols=62  Identities=21%  Similarity=0.321  Sum_probs=55.9

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..++++|+++.|++..             ..+++|+||++++||++|++|||||||||++++|.|+++|++|++
T Consensus       337 ~~~i~~~~v~~~y~~~~-------------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i  398 (578)
T 4a82_A          337 QGRIDIDHVSFQYNDNE-------------APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI  398 (578)
T ss_dssp             SCCEEEEEEEECSCSSS-------------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE
T ss_pred             CCeEEEEEEEEEcCCCC-------------CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE
Confidence            34699999999996431             258999999999999999999999999999999999999999986

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.24  E-value=6.8e-12  Score=134.25  Aligned_cols=61  Identities=23%  Similarity=0.367  Sum_probs=55.3

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|+++.|+++.             ..+++|+||++++||+++|+|||||||||++++|+|+++|++|++
T Consensus       340 ~~i~~~~v~~~y~~~~-------------~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i  400 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKE-------------KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI  400 (582)
T ss_pred             CeEEEEEEEEEcCCCC-------------ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence            4699999999996421             258999999999999999999999999999999999999999986

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.23  E-value=4.9e-12  Score=140.35  Aligned_cols=63  Identities=30%  Similarity=0.470  Sum_probs=55.9

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +..++++||+|.|++..             +.+++|+||++++||++||+|+|||||||++++|+|+++|++|+++
T Consensus       669 ~~mL~v~nLs~~Y~g~~-------------~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~  731 (986)
T 2iw3_A          669 KAIVKVTNMEFQYPGTS-------------KPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY  731 (986)
T ss_dssp             SEEEEEEEEEECCTTCS-------------SCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred             CceEEEEeeEEEeCCCC-------------ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence            34699999999995421             1589999999999999999999999999999999999999999863

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.22  E-value=8.4e-12  Score=133.56  Aligned_cols=61  Identities=25%  Similarity=0.438  Sum_probs=55.1

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|+++.|+++.             ..+++|+||++++||++||+|||||||||++++|+|+++|++|++
T Consensus       340 ~~i~~~~v~~~y~~~~-------------~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i  400 (582)
T 3b60_A          340 GDLEFRNVTFTYPGRE-------------VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI  400 (582)
T ss_dssp             CCEEEEEEEECSSSSS-------------CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE
T ss_pred             CcEEEEEEEEEcCCCC-------------CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeE
Confidence            4599999999995320             158999999999999999999999999999999999999999986

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.21  E-value=2.9e-12  Score=137.51  Aligned_cols=60  Identities=23%  Similarity=0.365  Sum_probs=55.0

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|+++.|++.              ..+++|+||++++||++|++|||||||||++++|+|+++|++|++
T Consensus       353 ~~i~~~~v~~~y~~~--------------~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i  412 (598)
T 3qf4_B          353 GEIEFKNVWFSYDKK--------------KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI  412 (598)
T ss_dssp             CCEEEEEEECCSSSS--------------SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE
T ss_pred             CeEEEEEEEEECCCC--------------CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE
Confidence            469999999999532              158999999999999999999999999999999999999999986

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.21  E-value=8e-12  Score=133.72  Aligned_cols=62  Identities=16%  Similarity=0.277  Sum_probs=55.9

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..++++|+++.|++..             ..+++|+||++++||+++++|+|||||||++++|.|+++|++|++
T Consensus       339 ~~~i~~~~v~~~y~~~~-------------~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i  400 (587)
T 3qf4_A          339 EGSVSFENVEFRYFENT-------------DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV  400 (587)
T ss_dssp             CCCEEEEEEEECSSSSS-------------CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEE
T ss_pred             CCcEEEEEEEEEcCCCC-------------CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEE
Confidence            34699999999996431             258999999999999999999999999999999999999999986

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.16  E-value=3.7e-11  Score=128.50  Aligned_cols=60  Identities=30%  Similarity=0.410  Sum_probs=54.6

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +..+++++++|.|++                ..+++++|++++||++||+|+|||||||++++|+|+.+|++|++.
T Consensus       355 ~~~l~~~~l~~~~~~----------------~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~  414 (607)
T 3bk7_A          355 ETLVEYPRLVKDYGS----------------FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVE  414 (607)
T ss_dssp             CEEEEECCEEEECSS----------------CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCC
T ss_pred             ceEEEEeceEEEecc----------------eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEE
Confidence            467999999999943                358999999999999999999999999999999999999999873

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.15  E-value=4.3e-11  Score=126.50  Aligned_cols=60  Identities=30%  Similarity=0.394  Sum_probs=54.7

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +..+++++++|.|++                ..+++++|++++||++||+|+|||||||++++|+|+.+|++|++.
T Consensus       285 ~~~l~~~~l~~~~~~----------------~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~  344 (538)
T 1yqt_A          285 ETLVTYPRLVKDYGS----------------FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIE  344 (538)
T ss_dssp             CEEEEECCEEEEETT----------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCC
T ss_pred             CeEEEEeeEEEEECC----------------EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence            467999999999942                358999999999999999999999999999999999999999873

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.15  E-value=4e-11  Score=126.55  Aligned_cols=59  Identities=22%  Similarity=0.300  Sum_probs=53.8

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..+++++++|.|++                ..++..+|++++||++||+|+|||||||++++|+|+.+|++|++
T Consensus       267 ~~~l~~~~l~~~~~~----------------~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i  325 (538)
T 3ozx_A          267 KTKMKWTKIIKKLGD----------------FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSV  325 (538)
T ss_dssp             CEEEEECCEEEEETT----------------EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE
T ss_pred             cceEEEcceEEEECC----------------EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            567999999999953                35777899999999999999999999999999999999999986

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.15  E-value=2e-11  Score=129.01  Aligned_cols=58  Identities=21%  Similarity=0.276  Sum_probs=48.4

Q ss_pred             eEEE-ecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQI-RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i-~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +..+ +||+|.|++.              ..+++++| .+++||++||+|+|||||||++++|+|+++|++|++
T Consensus        20 ~~~~~~~ls~~yg~~--------------~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~   78 (538)
T 1yqt_A           20 MEQLEEDCVHRYGVN--------------AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD   78 (538)
T ss_dssp             ----CCCEEEECSTT--------------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             ChhHhcCcEEEECCc--------------cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence            3444 5899999532              14899999 999999999999999999999999999999999973

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.14  E-value=2.3e-11  Score=130.03  Aligned_cols=58  Identities=24%  Similarity=0.328  Sum_probs=51.1

Q ss_pred             eEEE--------ecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          406 AVQI--------RGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       406 ~i~i--------~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      .+++        +||+|.|++.              ..+++++| .+++||++||+|+|||||||++++|+|+++|++|+
T Consensus        83 ~i~i~~l~~~~~~~ls~~yg~~--------------~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~  147 (607)
T 3bk7_A           83 AISIVNLPEQLDEDCVHRYGVN--------------AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCE  147 (607)
T ss_dssp             CCEEEEECTTGGGSEEEECSTT--------------CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred             eEEEecCCccccCCeEEEECCC--------------CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence            5888        7888888431              14899999 99999999999999999999999999999999997


Q ss_pred             c
Q 011717          478 G  478 (479)
Q Consensus       478 a  478 (479)
                      +
T Consensus       148 ~  148 (607)
T 3bk7_A          148 D  148 (607)
T ss_dssp             T
T ss_pred             c
Confidence            3

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.01  E-value=1.8e-10  Score=123.01  Aligned_cols=43  Identities=28%  Similarity=0.346  Sum_probs=39.4

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++++++ .+++||++||+|||||||||++++|+|+++|++|++
T Consensus        92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B           92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            3677777 589999999999999999999999999999999986

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.00  E-value=2.4e-10  Score=132.31  Aligned_cols=62  Identities=21%  Similarity=0.403  Sum_probs=55.9

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|+++.|++..            +..+++|+||++++||++||+|+|||||||++++|.|+++|++|++
T Consensus       386 g~i~~~~v~~~y~~~~------------~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i  447 (1284)
T 3g5u_A          386 GNLEFKNIHFSYPSRK------------EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV  447 (1284)
T ss_dssp             CCEEEEEEEECCSSTT------------SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEE
T ss_pred             CeEEEEEEEEEcCCCC------------CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            4699999999996431            2369999999999999999999999999999999999999999986

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.00  E-value=2.9e-11  Score=120.71  Aligned_cols=59  Identities=17%  Similarity=0.110  Sum_probs=52.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+++++++|.|+.+              +.|+|++ |.+.+||++||+|+|||||||++++|+|+..|+.|.+
T Consensus        44 ~~i~~~~l~~~~~tg--------------~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i  102 (347)
T 2obl_A           44 DPLLRQVIDQPFILG--------------VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVL  102 (347)
T ss_dssp             CSTTCCCCCSEECCS--------------CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred             CCeeecccceecCCC--------------CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEE
Confidence            468889999999532              2599999 9999999999999999999999999999999998854

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=98.94  E-value=4.1e-10  Score=130.40  Aligned_cols=62  Identities=27%  Similarity=0.467  Sum_probs=55.6

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..++++|+++.|++.            +...+++|+||++++||++||+|+|||||||++++|.|+++|++|++
T Consensus      1029 g~i~~~~v~~~y~~~------------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I 1090 (1284)
T 3g5u_A         1029 GNVQFSGVVFNYPTR------------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090 (1284)
T ss_dssp             CCEEEEEEEBCCSCG------------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEE
T ss_pred             CcEEEEEEEEECCCC------------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence            469999999999642            12258999999999999999999999999999999999999999986

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.93  E-value=3.1e-10  Score=117.36  Aligned_cols=44  Identities=20%  Similarity=0.095  Sum_probs=42.2

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .|++++||++++ |++||+|||||||||++++|+|+++|++|++.
T Consensus        18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~   61 (483)
T 3euj_A           18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLN   61 (483)
T ss_dssp             TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCC
T ss_pred             ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEE
Confidence            589999999999 99999999999999999999999999999874

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=98.86  E-value=2.4e-10  Score=116.32  Aligned_cols=45  Identities=20%  Similarity=0.318  Sum_probs=43.2

Q ss_pred             ceeeeeEEEEeCCc--------------------EEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          435 HAIKGLWVNIAKDQ--------------------LFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       435 ~AV~~lsl~v~~ge--------------------i~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .+++++|+++++||                    ++||+|+|||||||++|+|+|+.+|++|++.
T Consensus        37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~  101 (413)
T 1tq4_A           37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAK  101 (413)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCC
T ss_pred             HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEE
Confidence            69999999999999                    9999999999999999999999999999863

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.85  E-value=2.7e-09  Score=118.47  Aligned_cols=51  Identities=14%  Similarity=0.298  Sum_probs=45.3

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      ...+...+++|.|++.               .+++|+||++++||++||+|+|||||||++++|+|
T Consensus       433 ~~~L~~~~ls~~yg~~---------------~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          433 GEDLCNCEFSLAYGAK---------------ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             SCEEEEEEEEEEETTE---------------EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             cceeEEeeEEEEECCE---------------EeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            3467778999999532               59999999999999999999999999999999984

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.85  E-value=1.9e-09  Score=125.19  Aligned_cols=62  Identities=26%  Similarity=0.464  Sum_probs=56.0

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..|+++|++..|+++            ++..+++|+||+|++||.+|+.|++||||||+++.|.|+++|++|++
T Consensus      1075 g~I~f~nVsf~Y~~~------------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1136 (1321)
T 4f4c_A         1075 GKVIFKNVRFAYPER------------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI 1136 (1321)
T ss_dssp             CCEEEEEEEECCTTS------------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEE
T ss_pred             CeEEEEEEEEeCCCC------------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEE
Confidence            469999999999643            22358999999999999999999999999999999999999999986

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.82  E-value=1.6e-09  Score=115.75  Aligned_cols=43  Identities=28%  Similarity=0.516  Sum_probs=40.8

Q ss_pred             ceeeeeEEEEeCC-----cEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          435 HAIKGLWVNIAKD-----QLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       435 ~AV~~lsl~v~~g-----ei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      .+++++||++.+|     |++||+|+|||||||++++|+|+.+|++|+
T Consensus       361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~  408 (608)
T 3j16_B          361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ  408 (608)
T ss_dssp             EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            4789999999999     889999999999999999999999999996

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.80  E-value=1.8e-09  Score=117.47  Aligned_cols=43  Identities=26%  Similarity=0.395  Sum_probs=32.8

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHH---------------------HHHhCCCCCCCcc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI---------------------SCLTGITPVTGGD  477 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~---------------------~mLtG~~~pTsG~  477 (479)
                      +|++|+||+|++||++||+|||||||||++                     +++.|+..|+.|.
T Consensus        32 ~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~   95 (670)
T 3ux8_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDA   95 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSE
T ss_pred             cceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccc
Confidence            699999999999999999999999999998                     8999999998654

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=98.79  E-value=3e-10  Score=116.79  Aligned_cols=59  Identities=17%  Similarity=0.189  Sum_probs=52.6

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..+++++++|.|+.+              +.|+|++ |.+.+||+++|+|+|||||||++++|+|+.+|++|.+
T Consensus       130 ~~l~~~~v~~~~~tg--------------~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i  188 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTG--------------VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVV  188 (438)
T ss_dssp             CTTTSCCCCSBCCCS--------------CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEE
T ss_pred             CceEEeccceecCCC--------------ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEE
Confidence            457889999999532              2599999 9999999999999999999999999999999999864

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.79  E-value=7.2e-11  Score=115.36  Aligned_cols=53  Identities=21%  Similarity=0.293  Sum_probs=47.6

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      |++++|++.|+ .               .+++++||++++||+++|+|||||||||++++|.|++   +|++
T Consensus       102 i~~~~vs~~y~-~---------------~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I  154 (305)
T 2v9p_A          102 FNYQNIELITF-I---------------NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV  154 (305)
T ss_dssp             HHHTTCCHHHH-H---------------HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE
T ss_pred             EEEEEEEEEcC-h---------------hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE
Confidence            67788998884 1               5899999999999999999999999999999999988   7765

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.74  E-value=1e-09  Score=107.40  Aligned_cols=43  Identities=26%  Similarity=0.332  Sum_probs=40.4

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++.++|.+++||+++|+|+||||||||+++|+|+++|++|++
T Consensus        89 ~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V  131 (302)
T 3b9q_A           89 SKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV  131 (302)
T ss_dssp             CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             cccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            5678899999999999999999999999999999999999986

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=98.74  E-value=8.6e-09  Score=119.71  Aligned_cols=62  Identities=24%  Similarity=0.381  Sum_probs=56.1

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ..|+++|++..|++.            ++..+++|+||++++||.+++.|++||||||+++.|.|+++|++|++
T Consensus       414 g~I~~~nvsF~Y~~~------------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I  475 (1321)
T 4f4c_A          414 GDITVENVHFTYPSR------------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI  475 (1321)
T ss_dssp             CCEEEEEEEECCSSS------------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEE
T ss_pred             CcEEEEEeeeeCCCC------------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcc
Confidence            469999999999643            22368999999999999999999999999999999999999999986

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.72  E-value=2e-10  Score=112.97  Aligned_cols=57  Identities=14%  Similarity=0.145  Sum_probs=51.5

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEE-------------------eCCcEEEEECCCCCcHHHHHH
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNI-------------------AKDQLFCLLGPNGAGKTTTIS  465 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v-------------------~~gei~~LLG~NGAGKTTt~~  465 (479)
                      ..+++++|+|.|.                 .+++++++.+                   .+|+++||+|+|||||||+++
T Consensus        36 ~~i~~~~v~~~y~-----------------~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~   98 (308)
T 1sq5_A           36 EDLSLEEVAEIYL-----------------PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTAR   98 (308)
T ss_dssp             TTCCHHHHHHTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHH
T ss_pred             cccchHhHHHHHH-----------------HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHH
Confidence            3588999999992                 4789999887                   999999999999999999999


Q ss_pred             HHhCCCC--CCCccc
Q 011717          466 CLTGITP--VTGGDG  478 (479)
Q Consensus       466 mLtG~~~--pTsG~a  478 (479)
                      +|+|++.  |++|++
T Consensus        99 ~L~~~l~~~~~~G~i  113 (308)
T 1sq5_A           99 VLQALLSRWPEHRRV  113 (308)
T ss_dssp             HHHHHHTTSTTCCCE
T ss_pred             HHHHHHhhCCCCCeE
Confidence            9999988  999986

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.68  E-value=4e-10  Score=110.84  Aligned_cols=56  Identities=11%  Similarity=0.128  Sum_probs=47.0

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEE-----------------------EeCCcEEEEECCCCCcH
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVN-----------------------IAKDQLFCLLGPNGAGK  460 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~-----------------------v~~gei~~LLG~NGAGK  460 (479)
                      +..|.+++|+|.|.                 .+++++++.                       +++|+++||+|+|||||
T Consensus        41 ~~~i~~~~v~~~y~-----------------p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGK  103 (312)
T 3aez_A           41 GEQIDLLEVEEVYL-----------------PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGK  103 (312)
T ss_dssp             TCCCCHHHHHHTHH-----------------HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCH
T ss_pred             CCeEEeeehhhhhh-----------------hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchH
Confidence            45689999999993                 234444432                       89999999999999999


Q ss_pred             HHHHHHHhCCCCCCCc
Q 011717          461 TTTISCLTGITPVTGG  476 (479)
Q Consensus       461 TTt~~mLtG~~~pTsG  476 (479)
                      ||++++|+|+++|++|
T Consensus       104 STL~~~L~gll~~~~G  119 (312)
T 3aez_A          104 STTARVLQALLARWDH  119 (312)
T ss_dssp             HHHHHHHHHHHHTSTT
T ss_pred             HHHHHHHHhhccccCC
Confidence            9999999999999877

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.68  E-value=2e-10  Score=114.42  Aligned_cols=57  Identities=19%  Similarity=0.205  Sum_probs=50.7

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++|.|++               ..+++++++.+.+|++++|+|+|||||||++++|+|++.|++|++
T Consensus        30 ie~~~~~~~~~~---------------~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v   86 (337)
T 2qm8_A           30 AESRRADHRAAV---------------RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV   86 (337)
T ss_dssp             HTCSSHHHHHHH---------------HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             HeeCCcccccCh---------------HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE
Confidence            667788888842               158999999999999999999999999999999999999999875

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=98.68  E-value=1.3e-09  Score=115.13  Aligned_cols=45  Identities=16%  Similarity=0.137  Sum_probs=42.4

Q ss_pred             ceeeeeEE-EEeCCcEEEEECCCCCcHHHHHHH--HhCCCCCCCcccC
Q 011717          435 HAIKGLWV-NIAKDQLFCLLGPNGAGKTTTISC--LTGITPVTGGDGC  479 (479)
Q Consensus       435 ~AV~~lsl-~v~~gei~~LLG~NGAGKTTt~~m--LtG~~~pTsG~a~  479 (479)
                      .|+|++++ ++++||+++|+|+|||||||++++  ++|+.+|++|.+|
T Consensus        26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~   73 (525)
T 1tf7_A           26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVF   73 (525)
T ss_dssp             TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEE
T ss_pred             hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEE
Confidence            59999999 999999999999999999999999  7899999999764

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.60  E-value=4.2e-09  Score=105.21  Aligned_cols=42  Identities=26%  Similarity=0.332  Sum_probs=38.8

Q ss_pred             eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++.++|.+++|++++|+|+||||||||+++|+|+++|++|++
T Consensus       147 ~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V  188 (359)
T 2og2_A          147 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV  188 (359)
T ss_dssp             -CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEE
Confidence            357889999999999999999999999999999999999976

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.56  E-value=3.8e-09  Score=104.80  Aligned_cols=43  Identities=28%  Similarity=0.264  Sum_probs=41.6

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++++.+++|++++++|+|||||||++++|+|+++|++|.+
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i  202 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERII  202 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEE
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEE
Confidence            7899999999999999999999999999999999999999975

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.55  E-value=7.8e-09  Score=106.60  Aligned_cols=42  Identities=31%  Similarity=0.257  Sum_probs=39.7

Q ss_pred             eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++||.+.+|++++|+|+||||||||+++|+|+++|++|++
T Consensus       283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V  324 (503)
T 2yhs_A          283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSV  324 (503)
T ss_dssp             BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeE
Confidence            578899999999999999999999999999999999999986

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.52  E-value=4.5e-09  Score=108.66  Aligned_cols=52  Identities=13%  Similarity=0.103  Sum_probs=46.1

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc-c
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG-D  477 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG-~  477 (479)
                      ..++++||+|.|                     +++||.+++||+++|+|+|||||||++++|+|+.+|++| +
T Consensus       117 ~mi~~~nl~~~y---------------------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~  169 (460)
T 2npi_A          117 TMKYIYNLHFML---------------------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQ  169 (460)
T ss_dssp             THHHHHHHHHHH---------------------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCC
T ss_pred             chhhhhhhhehh---------------------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCce
Confidence            346777888777                     168899999999999999999999999999999999999 7

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.52  E-value=9.4e-09  Score=103.26  Aligned_cols=43  Identities=21%  Similarity=0.241  Sum_probs=40.8

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++++|.+++|++++++|+|||||||++++|.|+++|++|.+
T Consensus       164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I  206 (361)
T 2gza_A          164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLI  206 (361)
T ss_dssp             HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEE
T ss_pred             HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEE
Confidence            3499999999999999999999999999999999999999975

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.48  E-value=1.2e-08  Score=103.70  Aligned_cols=50  Identities=18%  Similarity=0.209  Sum_probs=39.6

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcE--EEEECCCCCcHHHHHHHHhCCC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei--~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      ..+++++ +|.|++.               . ++++||.+++|++  +||+|+|||||||++++|+|+.
T Consensus        15 ~~l~~~~-~~~y~~~---------------~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           15 RTVPLAG-HVGFDSL---------------P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             --CCCCC-CC-CC-----------------C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             ceEEEee-EEEECCe---------------e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            3466666 7778421               4 9999999999999  9999999999999999999974

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.45  E-value=9.4e-08  Score=97.46  Aligned_cols=51  Identities=20%  Similarity=0.199  Sum_probs=39.2

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      ..+.+++|+|.|++.               .|++|++|.|      +|+|+|||||||++++|+|...|+.|
T Consensus        10 ~~l~~~~l~~~y~~~---------------~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~   60 (418)
T 2qag_C           10 GYVGFANLPNQVYRK---------------SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE   60 (418)
T ss_dssp             -----CCCCCCTTTT---------------TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred             CcEEEEecceeECCE---------------EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence            358899999999532               5899999998      99999999999999999998875443

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.43  E-value=1.7e-08  Score=105.67  Aligned_cols=44  Identities=23%  Similarity=0.344  Sum_probs=42.0

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++++.+++|++++++|+||||||||+++|+|+++|++|.+
T Consensus       248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~gii  291 (511)
T 2oap_1          248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVV  291 (511)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEE
T ss_pred             HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEE
Confidence            58999999999999999999999999999999999999999864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=98.39  E-value=2.3e-08  Score=97.47  Aligned_cols=42  Identities=14%  Similarity=0.101  Sum_probs=40.4

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      .+++++++++++||+++|+|+|||||||++++|+|...|++|
T Consensus        23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G   64 (296)
T 1cr0_A           23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG   64 (296)
T ss_dssp             TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence            589999999999999999999999999999999999999877

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=98.35  E-value=1.2e-07  Score=103.00  Aligned_cols=34  Identities=26%  Similarity=0.468  Sum_probs=32.0

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      .||+|+||+|++||+++|+|||||||||++++|.
T Consensus       336 ~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          336 HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             TTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             cccccceeEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            5899999999999999999999999999998754

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.31  E-value=1.1e-07  Score=94.02  Aligned_cols=35  Identities=34%  Similarity=0.354  Sum_probs=33.0

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .++|++++|+|+||||||||+++|+|.++|++|++
T Consensus       126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V  160 (328)
T 3e70_C          126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSV  160 (328)
T ss_dssp             SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEE
Confidence            46899999999999999999999999999999976

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.29  E-value=3.4e-07  Score=89.50  Aligned_cols=37  Identities=14%  Similarity=0.220  Sum_probs=30.7

Q ss_pred             EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       442 l~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +.+.+|++.+|+|+|||||||++++|+|+.+|++|++
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i  200 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV  200 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccce
Confidence            3456799999999999999999999999999999976

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.29  E-value=1.6e-07  Score=91.78  Aligned_cols=33  Identities=36%  Similarity=0.425  Sum_probs=31.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +||+++++|+||||||||+++|+|+++|++|++
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V  133 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKV  133 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEE
Confidence            689999999999999999999999999999976

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.28  E-value=5.4e-08  Score=97.88  Aligned_cols=42  Identities=19%  Similarity=0.245  Sum_probs=38.9

Q ss_pred             eeeeEEEEeC--CcEEEEECCCCCcHHHHHHHHhCCCCCCC----ccc
Q 011717          437 IKGLWVNIAK--DQLFCLLGPNGAGKTTTISCLTGITPVTG----GDG  478 (479)
Q Consensus       437 V~~lsl~v~~--gei~~LLG~NGAGKTTt~~mLtG~~~pTs----G~a  478 (479)
                      .+.+++.|++  |+.++|+|+|||||||++++|+|+++|++    |++
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i  205 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGRE  205 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHH
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHH
Confidence            4679999999  99999999999999999999999999999    754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=98.26  E-value=4.9e-07  Score=90.03  Aligned_cols=42  Identities=21%  Similarity=0.366  Sum_probs=35.8

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-CCCccc
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGDG  478 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-pTsG~a  478 (479)
                      .+++|++. .+|++++|+|+|||||||++|+|+|+.+ |++|++
T Consensus       205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I  247 (358)
T 2rcn_A          205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDV  247 (358)
T ss_dssp             THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC--
T ss_pred             CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCc
Confidence            46666664 5899999999999999999999999999 999975

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.22  E-value=5.6e-07  Score=98.97  Aligned_cols=47  Identities=21%  Similarity=0.347  Sum_probs=40.3

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHH-HhCC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC-LTGI  470 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~m-LtG~  470 (479)
                      +..++++++++                    .+++|+||+|++||++|++|+|||||||++++ |+|.
T Consensus       500 ~~~L~v~~l~~--------------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~  547 (842)
T 2vf7_A          500 AGWLELNGVTR--------------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDA  547 (842)
T ss_dssp             SCEEEEEEEEE--------------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred             CceEEEEeeee--------------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence            45688888753                    26999999999999999999999999999997 7743

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=98.21  E-value=2e-07  Score=95.21  Aligned_cols=39  Identities=21%  Similarity=0.298  Sum_probs=35.8

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      .++++++|.+.+| +.+|+|+|||||||++++|.|+..+.
T Consensus        49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~   87 (415)
T 4aby_A           49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGR   87 (415)
T ss_dssp             TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCC
T ss_pred             cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            4799999999999 99999999999999999998877654

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.19  E-value=1.4e-07  Score=92.22  Aligned_cols=37  Identities=14%  Similarity=0.259  Sum_probs=26.1

Q ss_pred             EEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          442 VNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       442 l~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +.+.+|++++|+|+|||||||++|+|+|+.+|++|++
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I  204 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEI  204 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccce
Confidence            4566899999999999999999999999999999976

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=98.17  E-value=7.7e-07  Score=100.26  Aligned_cols=53  Identities=23%  Similarity=0.380  Sum_probs=40.5

Q ss_pred             ceEEEec-----ceEEcCCCCccccccccCCCCCcceeeeeEEEEeC-------CcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          405 VAVQIRG-----LVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAK-------DQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       405 ~~i~i~~-----l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~-------gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      ..+++++     |.|.|.+.              ..+++|++|++.+       |++++|+|||||||||+++++ |+..
T Consensus       749 ~~l~i~~~rHP~l~~~~~~~--------------~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~  813 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFFGD--------------DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA  813 (1022)
T ss_dssp             CCEEEEEECCCC------CC--------------CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred             ceEEEEeccccEEEEEecCC--------------ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence            4589999     88888322              1589999999987       999999999999999999999 8754

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.17  E-value=1e-06  Score=86.08  Aligned_cols=35  Identities=26%  Similarity=0.380  Sum_probs=32.4

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+.+|++.+|+|+|||||||++|+|+ +.+|++|++
T Consensus       161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i  195 (302)
T 2yv5_A          161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEV  195 (302)
T ss_dssp             HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC
T ss_pred             hhccCcEEEEECCCCCCHHHHHHHHH-HhhCccccc
Confidence            44579999999999999999999999 999999986

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.13  E-value=1.6e-07  Score=89.27  Aligned_cols=51  Identities=20%  Similarity=0.234  Sum_probs=34.1

Q ss_pred             ceEEEecc-eEEcCCCCccccccccCCCCCcceeeeeEEEEeC---CcEEEEECCCCCcHHHHHHHHhC
Q 011717          405 VAVQIRGL-VKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAK---DQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       405 ~~i~i~~l-~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~---gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      ..++++|| +|.|++.              ..+++++||.+.+   |++++|+|++||||||+.++|.+
T Consensus        16 ~~l~~~~~~~~~~~~~--------------~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~   70 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEE--------------QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMAR   70 (250)
T ss_dssp             ------------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHH
T ss_pred             CceEEcceeeEEecCc--------------chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999 9999322              1699999999999   99999999999999999999987

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.05  E-value=1e-06  Score=89.83  Aligned_cols=42  Identities=19%  Similarity=0.269  Sum_probs=37.7

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+++++ + ..+|++++++||||||||||++.|.|+++|++|++
T Consensus       157 ~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I  198 (418)
T 1p9r_A          157 DNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNI  198 (418)
T ss_dssp             HHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCE
T ss_pred             HHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEE
Confidence            367777 4 48999999999999999999999999999999976

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.05  E-value=3.1e-07  Score=92.45  Aligned_cols=41  Identities=29%  Similarity=0.331  Sum_probs=36.4

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-Cccc
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGDG  478 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT-sG~a  478 (479)
                      ++++++  +++|++++++|+||||||||++.|.|+++|+ +|++
T Consensus       127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I  168 (372)
T 2ewv_A          127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI  168 (372)
T ss_dssp             SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEE
T ss_pred             HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEE
Confidence            456655  7899999999999999999999999999998 8875

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=98.04  E-value=1.8e-06  Score=96.10  Aligned_cols=42  Identities=21%  Similarity=0.260  Sum_probs=37.8

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHH--------hCCCCCCCc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCL--------TGITPVTGG  476 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mL--------tG~~~pTsG  476 (479)
                      .+.+|++|++.+|++++|+|||||||||+++++        .|.+-|.++
T Consensus       650 ~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~  699 (934)
T 3thx_A          650 FIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES  699 (934)
T ss_dssp             CCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred             eecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence            578999999999999999999999999999999        887766543

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=98.01  E-value=1.3e-06  Score=95.45  Aligned_cols=40  Identities=28%  Similarity=0.296  Sum_probs=36.3

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC-CCCcc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP-VTGGD  477 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~-pTsG~  477 (479)
                      .+++|++|+   |++++|+|||||||||++++|+|+.. +..|.
T Consensus       567 ~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~  607 (765)
T 1ewq_A          567 FVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGS  607 (765)
T ss_dssp             CCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTC
T ss_pred             eEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCc
Confidence            689999999   99999999999999999999999863 67775

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=98.00  E-value=1.6e-06  Score=96.26  Aligned_cols=35  Identities=17%  Similarity=0.225  Sum_probs=33.2

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      .+.+|++|++++|++++|+|||||||||+++++.|
T Consensus       661 ~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~  695 (918)
T 3thx_B          661 YVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL  695 (918)
T ss_dssp             SCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred             eecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence            58999999999999999999999999999999874

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.99  E-value=2e-06  Score=87.55  Aligned_cols=35  Identities=20%  Similarity=0.241  Sum_probs=33.3

Q ss_pred             eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      -++++|.++.|++++|+|+|||||||++++|+|..
T Consensus       147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            57999999999999999999999999999999984

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.97  E-value=3.2e-06  Score=92.97  Aligned_cols=35  Identities=23%  Similarity=0.330  Sum_probs=33.5

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .+++|++|+ ++|++++|+|||||||||++++|+|+
T Consensus       596 ~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl  630 (800)
T 1wb9_A          596 FIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALI  630 (800)
T ss_dssp             CCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence            589999999 99999999999999999999999986

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.90  E-value=7.9e-07  Score=88.82  Aligned_cols=35  Identities=26%  Similarity=0.339  Sum_probs=31.8

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC-Ccc
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVT-GGD  477 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT-sG~  477 (479)
                      .+.+|++++++|+||||||||+++|.|+++|+ +|.
T Consensus       119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~  154 (356)
T 3jvv_A          119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHH  154 (356)
T ss_dssp             HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCE
T ss_pred             HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcE
Confidence            67899999999999999999999999999987 443

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=97.89  E-value=9e-06  Score=90.21  Aligned_cols=40  Identities=23%  Similarity=0.419  Sum_probs=34.1

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHH---------HHHhCCCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI---------SCLTGITPVT  474 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~---------~mLtG~~~pT  474 (479)
                      .+++|+||++++||++|++|+|||||||++         +++.|...++
T Consensus       598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~  646 (916)
T 3pih_A          598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPA  646 (916)
T ss_dssp             TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCC
T ss_pred             ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccc
Confidence            479999999999999999999999999997         5666654443

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.89  E-value=1.4e-07  Score=93.71  Aligned_cols=44  Identities=30%  Similarity=0.332  Sum_probs=39.3

Q ss_pred             ceeeeeEEEEeCC-------cEEEEECCCCCcHHHHHHHHhCCC----CCCCccc
Q 011717          435 HAIKGLWVNIAKD-------QLFCLLGPNGAGKTTTISCLTGIT----PVTGGDG  478 (479)
Q Consensus       435 ~AV~~lsl~v~~g-------ei~~LLG~NGAGKTTt~~mLtG~~----~pTsG~a  478 (479)
                      .+++++++.+.+|       +.++|.||||+||||++++|+|..    .+++|.+
T Consensus        32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~   86 (334)
T 1in4_A           32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPV   86 (334)
T ss_dssp             HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTT
T ss_pred             HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechH
Confidence            5789999999876       899999999999999999999987    7788865

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.87  E-value=3.1e-06  Score=90.66  Aligned_cols=36  Identities=17%  Similarity=0.367  Sum_probs=25.7

Q ss_pred             EEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC-CCcccC
Q 011717          441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV-TGGDGC  479 (479)
Q Consensus       441 sl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p-TsG~a~  479 (479)
                      +++++.   +|++|+|||||||++++|+|+..| ++|++.
T Consensus        42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt   78 (608)
T 3szr_A           42 DLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVT   78 (608)
T ss_dssp             SCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CC
T ss_pred             cccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEE
Confidence            355554   999999999999999999999988 799863

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.84  E-value=1.3e-06  Score=78.37  Aligned_cols=34  Identities=21%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      .+.+|++++|.|+||+||||+++.|+|...|++|
T Consensus        34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g   67 (180)
T 3ec2_A           34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG   67 (180)
T ss_dssp             CGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence            3457899999999999999999999998877777

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=97.80  E-value=5.7e-06  Score=91.52  Aligned_cols=33  Identities=24%  Similarity=0.421  Sum_probs=31.3

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      +++|+||+|++||++|++|+|||||||++++|.
T Consensus       639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            699999999999999999999999999999853

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.76  E-value=3.3e-06  Score=83.14  Aligned_cols=41  Identities=24%  Similarity=0.309  Sum_probs=37.9

Q ss_pred             eeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       438 ~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++|.+.+|++++++|+||+|||||...|+|.+.+++|++
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kV  136 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKV  136 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            68888899999999999999999999999999998887765

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.69  E-value=4.6e-06  Score=72.59  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=31.4

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      .+++++     +|++++|.|+||+||||++++|.|...+ +|
T Consensus        29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g   64 (149)
T 2kjq_A           29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG   64 (149)
T ss_dssp             HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred             HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence            466666     8999999999999999999999998776 45

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=97.68  E-value=1.6e-05  Score=72.43  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=23.7

Q ss_pred             eeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          437 IKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       437 V~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      +-+..+..++|++++|+|+|||||||+.++|+|.
T Consensus        19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             ---------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence            4444466778999999999999999999999864

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.67  E-value=5.2e-06  Score=83.42  Aligned_cols=36  Identities=31%  Similarity=0.446  Sum_probs=34.5

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .+++++++++++|++++|.||||+||||++++|+|.
T Consensus       157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            589999999999999999999999999999999984

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.64  E-value=3.2e-06  Score=84.04  Aligned_cols=43  Identities=16%  Similarity=0.204  Sum_probs=38.0

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      .+++++++.+.+|++++++|+|||||||+++.|+|.+.+++|+
T Consensus        44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~   86 (341)
T 2p67_A           44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLK   86 (341)
T ss_dssp             HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCe
Confidence            5788999999999999999999999999999999877665554

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.63  E-value=7.5e-06  Score=79.97  Aligned_cols=39  Identities=28%  Similarity=0.277  Sum_probs=34.5

Q ss_pred             eEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       440 lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++...+|++++++|+||+|||||+..|+|.+++++|++
T Consensus        97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV  135 (306)
T 1vma_A           97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSV  135 (306)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEE
Confidence            455567899999999999999999999999998887765

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.63  E-value=7.5e-06  Score=81.58  Aligned_cols=41  Identities=22%  Similarity=0.295  Sum_probs=36.8

Q ss_pred             ceeeee-EEEEeCCcEEEEECCCCCcHHHHHHHHhCCC--CCCC
Q 011717          435 HAIKGL-WVNIAKDQLFCLLGPNGAGKTTTISCLTGIT--PVTG  475 (479)
Q Consensus       435 ~AV~~l-sl~v~~gei~~LLG~NGAGKTTt~~mLtG~~--~pTs  475 (479)
                      ..+|.+ ..++++|++++|.|+||+||||+++.|+|..  +|++
T Consensus       118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~  161 (349)
T 1pzn_A          118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE  161 (349)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGG
T ss_pred             HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhc
Confidence            467776 6899999999999999999999999999987  7776

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.60  E-value=4.8e-06  Score=81.78  Aligned_cols=43  Identities=14%  Similarity=0.203  Sum_probs=36.4

Q ss_pred             ceeeeeEEEEeCCc------EEEEECCCCCcHHHHHHHHhCCCC--CCCcc
Q 011717          435 HAIKGLWVNIAKDQ------LFCLLGPNGAGKTTTISCLTGITP--VTGGD  477 (479)
Q Consensus       435 ~AV~~lsl~v~~ge------i~~LLG~NGAGKTTt~~mLtG~~~--pTsG~  477 (479)
                      .++++++..+.+++      ++||.|+|||||||+.++|.|++.  |++|.
T Consensus        74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~  124 (321)
T 3tqc_A           74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN  124 (321)
T ss_dssp             HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred             HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe
Confidence            46777777777776      999999999999999999999877  56665

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.59  E-value=1.2e-05  Score=78.26  Aligned_cols=32  Identities=34%  Similarity=0.533  Sum_probs=29.9

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      .+|++++++|+||+|||||+..|+|.+.+++|
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G  134 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH  134 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence            47999999999999999999999999988777

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.59  E-value=7.5e-06  Score=78.77  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=34.1

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      .+++++++.+++|  ++|.||||+||||++++|+|...+
T Consensus        34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~   70 (274)
T 2x8a_A           34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL   70 (274)
T ss_dssp             HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC
Confidence            4789999999999  999999999999999999998765

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.51  E-value=1.6e-05  Score=77.35  Aligned_cols=39  Identities=28%  Similarity=0.296  Sum_probs=35.4

Q ss_pred             eeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       438 ~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++|.  +|+++++.|+||+||||+...|+|.+++.+|++
T Consensus        91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v  129 (295)
T 1ls1_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP  129 (295)
T ss_dssp             CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCE
T ss_pred             ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            677777  999999999999999999999999998887765

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.48  E-value=1.6e-05  Score=83.75  Aligned_cols=34  Identities=26%  Similarity=0.301  Sum_probs=31.9

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      .+++|++++|+|+|||||||+.++|+|.+.|++|
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G  398 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGG  398 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence            4689999999999999999999999999999887

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.37  E-value=3.9e-05  Score=76.37  Aligned_cols=33  Identities=30%  Similarity=0.359  Sum_probs=28.0

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      .++.+++|+|++||||||+++.|+|...+++|+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~  104 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHK  104 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCe
Confidence            356899999999999999999999976666554

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.33  E-value=6.3e-05  Score=67.78  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=22.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      .++|+|+|||||||+++.|+|...+
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~~   55 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEFN   55 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCCC
Confidence            5789999999999999999997654

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.23  E-value=5.1e-05  Score=79.85  Aligned_cols=34  Identities=24%  Similarity=0.233  Sum_probs=31.6

Q ss_pred             EEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          441 WVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       441 sl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      +.++++|++++|.|+||+||||++++++|..+|+
T Consensus       275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~  308 (525)
T 1tf7_A          275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN  308 (525)
T ss_dssp             TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            3489999999999999999999999999998886

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.20  E-value=4.4e-05  Score=72.18  Aligned_cols=36  Identities=28%  Similarity=0.440  Sum_probs=32.9

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      .+++++++.+++|  +.|.|+||+||||++++|+|...
T Consensus        39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC
Confidence            4789999999999  89999999999999999999764

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.19  E-value=0.0002  Score=62.11  Aligned_cols=29  Identities=21%  Similarity=0.459  Sum_probs=23.3

Q ss_pred             eeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       439 ~lsl~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      +.++...+ .++++.|+|||||||++..|.
T Consensus        16 ~~~i~f~~-g~~~I~G~NGsGKStil~Ai~   44 (149)
T 1f2t_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAIL   44 (149)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred             ceEEEcCC-CeEEEECCCCCCHHHHHHHHH
Confidence            34455544 599999999999999999886

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.14  E-value=5.4e-05  Score=72.67  Aligned_cols=36  Identities=28%  Similarity=0.440  Sum_probs=33.0

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      .+++++++.+++|  +.|.|+||+||||++++|+|...
T Consensus        63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC
Confidence            4789999999999  89999999999999999999764

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.07  E-value=0.00023  Score=68.25  Aligned_cols=30  Identities=27%  Similarity=0.372  Sum_probs=27.3

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      ++++|++++|.|+||+||||+...|+|...
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            588999999999999999999999998544

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.96  E-value=0.00032  Score=70.91  Aligned_cols=41  Identities=20%  Similarity=0.266  Sum_probs=32.9

Q ss_pred             eeeeeE-EEEeCCcEEEEECCCCCcHHHHHH--HHhCCCCCCCc
Q 011717          436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTIS--CLTGITPVTGG  476 (479)
Q Consensus       436 AV~~ls-l~v~~gei~~LLG~NGAGKTTt~~--mLtG~~~pTsG  476 (479)
                      .+|.+- =++++|+++.|.|+||+||||+..  ++.+..+++.|
T Consensus       166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G  209 (400)
T 3lda_A          166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG  209 (400)
T ss_dssp             HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred             hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence            455432 389999999999999999999999  45688877555

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.94  E-value=0.00037  Score=69.46  Aligned_cols=41  Identities=22%  Similarity=0.514  Sum_probs=31.7

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC--CCCCCCccc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--ITPVTGGDG  478 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG--~~~pTsG~a  478 (479)
                      .|++++++.++   .++++|++||||||+++.|+|  .+++.+|.+
T Consensus        25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~v   67 (360)
T 3t34_A           25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIV   67 (360)
T ss_dssp             CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSC
T ss_pred             cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcc
Confidence            58999999998   899999999999999999999  556666643

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.92  E-value=0.00019  Score=73.03  Aligned_cols=39  Identities=28%  Similarity=0.296  Sum_probs=34.9

Q ss_pred             eeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       438 ~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++++.  +++++++.|+||+||||+...|++.+.+.+|.+
T Consensus        91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~V  129 (425)
T 2ffh_A           91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRP  129 (425)
T ss_dssp             CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            567777  899999999999999999999999998887764

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=96.76  E-value=0.00021  Score=74.95  Aligned_cols=34  Identities=24%  Similarity=0.412  Sum_probs=31.1

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .++++++.+.+| +.+|+|+|||||||++..|.++
T Consensus        50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l   83 (517)
T 4ad8_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL   83 (517)
T ss_dssp             TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred             ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence            578899999999 9999999999999999999665

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.75  E-value=0.00017  Score=77.09  Aligned_cols=41  Identities=20%  Similarity=0.349  Sum_probs=39.3

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs  475 (479)
                      .+++++++.+.+|+.+.|.|+||+||||+.+.|+|+.+++.
T Consensus        48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~   88 (604)
T 3k1j_A           48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTET   88 (604)
T ss_dssp             HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSS
T ss_pred             hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCccc
Confidence            68999999999999999999999999999999999998877

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.75  E-value=0.00014  Score=70.59  Aligned_cols=38  Identities=26%  Similarity=0.227  Sum_probs=32.6

Q ss_pred             eEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          440 LWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       440 lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +++..+ |+++++.|+||+||||+...|++.+.+.+|++
T Consensus        92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v  129 (297)
T 1j8m_F           92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKV  129 (297)
T ss_dssp             CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCE
T ss_pred             cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence            667665 99999999999999999999999887766654

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.69  E-value=0.00015  Score=76.62  Aligned_cols=43  Identities=26%  Similarity=0.335  Sum_probs=37.4

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .|++++++.+ +|+++.|.||||+||||+.+.|++...++.|.+
T Consensus        97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i  139 (543)
T 3m6a_A           97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRI  139 (543)
T ss_dssp             HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence            5788888888 899999999999999999999999887766543

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.69  E-value=0.00024  Score=71.02  Aligned_cols=49  Identities=22%  Similarity=0.232  Sum_probs=34.8

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG  475 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTs  475 (479)
                      -+.+.+|.+.|++               +.+.++.++.|      +++|++|+||||+++.|.|......
T Consensus        17 ~v~~~~l~~~~~~---------------k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~   65 (361)
T 2qag_A           17 YVGFANLPNQVHR---------------KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE   65 (361)
T ss_dssp             ----CCHHHHHHT---------------HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC---
T ss_pred             eEEeccchHHhCC---------------eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCC
Confidence            4777888887742               14688888887      9999999999999999988654433

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.54  E-value=6.7e-05  Score=74.25  Aligned_cols=41  Identities=27%  Similarity=0.373  Sum_probs=36.3

Q ss_pred             ceeeeeEEEEeCCcE--EEEECCCCCcHHHHHHHHhCCCCCCC
Q 011717          435 HAIKGLWVNIAKDQL--FCLLGPNGAGKTTTISCLTGITPVTG  475 (479)
Q Consensus       435 ~AV~~lsl~v~~gei--~~LLG~NGAGKTTt~~mLtG~~~pTs  475 (479)
                      .+++.++..+.+|++  ..|.||+|+||||+.+++++.+.++.
T Consensus        32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~   74 (340)
T 1sxj_C           32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN   74 (340)
T ss_dssp             HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence            588999999999999  99999999999999999998765544

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.47  E-value=0.00061  Score=67.86  Aligned_cols=51  Identities=20%  Similarity=0.250  Sum_probs=43.4

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceee--------------eeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIK--------------GLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~--------------~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .+..+||+..|+..+              ..++              |+.+.+.+||..+++|++|+||||++++|.+.
T Consensus       133 ri~Fe~ltp~yP~er--------------~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~  197 (422)
T 3ice_A          133 KILFENLTPLHANSR--------------LRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS  197 (422)
T ss_dssp             SCCTTTSCEESCCSB--------------CCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred             CceeccccccCCCCc--------------cccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence            467788999997542              3466              89999999999999999999999999999864

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.45  E-value=0.0018  Score=60.32  Aligned_cols=28  Identities=32%  Similarity=0.498  Sum_probs=23.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          449 LFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      .++|+|++|+||||+++.|+|...+.+|
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~~~~~   58 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKVFHSG   58 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence            3689999999999999999998776665

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.27  E-value=0.0014  Score=64.78  Aligned_cols=29  Identities=34%  Similarity=0.313  Sum_probs=25.7

Q ss_pred             EEEECCCCCcHHHHHHHHhC-CCCCCCccc
Q 011717          450 FCLLGPNGAGKTTTISCLTG-ITPVTGGDG  478 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG-~~~pTsG~a  478 (479)
                      ..|.|+||+||||+++.|+| +..|++|++
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i   68 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVYRL   68 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCCC-
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCCeE
Confidence            67899999999999999999 788888754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.19  E-value=0.0021  Score=64.14  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      +++|+|+|||||||+++.|+|...
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~  204 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQ  204 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc
Confidence            488999999999999999999876

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=95.91  E-value=0.0017  Score=62.67  Aligned_cols=28  Identities=21%  Similarity=0.224  Sum_probs=25.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      +++++|+.|++||||||+.+.|.+.+.+
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            4689999999999999999999987764

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=95.90  E-value=0.0017  Score=66.10  Aligned_cols=32  Identities=31%  Similarity=0.323  Sum_probs=27.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCCCCCcc
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGD  477 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~  477 (479)
                      ++.++++.|+||+|||||...|++.+.+.++.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~k  127 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYK  127 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence            56899999999999999999999776665544

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=95.85  E-value=0.0043  Score=63.49  Aligned_cols=24  Identities=17%  Similarity=0.308  Sum_probs=22.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      .++|+|+||+||||+++.|+|...
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~~  205 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKER  205 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSTT
T ss_pred             eEEEECCCCCCHHHHHHHHhCCcc
Confidence            689999999999999999999753

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=95.79  E-value=0.0019  Score=64.03  Aligned_cols=43  Identities=21%  Similarity=0.207  Sum_probs=35.0

Q ss_pred             eeeeeEE--EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          436 AIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       436 AV~~lsl--~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+|.+-=  ++++|+++.+.|+||+||||+...+++...+.+|.+
T Consensus        48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V   92 (356)
T 3hr8_A           48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA   92 (356)
T ss_dssp             HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence            4555433  689999999999999999999999998776666654

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.20  E-value=0.0033  Score=65.30  Aligned_cols=35  Identities=29%  Similarity=0.454  Sum_probs=30.9

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      +++++++.+++|  +.|.|+||+||||+.+.|+|...
T Consensus        55 ~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           55 RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred             hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence            577788888888  89999999999999999998653

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=94.93  E-value=0.0056  Score=60.69  Aligned_cols=36  Identities=17%  Similarity=0.285  Sum_probs=28.8

Q ss_pred             eeeeeEE--EEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          436 AIKGLWV--NIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       436 AV~~lsl--~v~~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .+|.+-=  ++++|+++.+.|+||+||||+...+++..
T Consensus        48 ~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           48 SLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4555433  78999999999999999999987777543

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=94.85  E-value=0.012  Score=58.40  Aligned_cols=25  Identities=28%  Similarity=0.448  Sum_probs=22.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      -.++++|+||+||||+++.|+|...
T Consensus       168 ~~v~lvG~~gvGKSTLin~L~~~~~  192 (357)
T 2e87_A          168 PTVVIAGHPNVGKSTLLKALTTAKP  192 (357)
T ss_dssp             CEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4789999999999999999999753

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=94.54  E-value=0.0028  Score=65.17  Aligned_cols=42  Identities=10%  Similarity=0.118  Sum_probs=36.5

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      ..+|++..++++|+++.+.|++|+||||+...|++...+..|
T Consensus       191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g  232 (454)
T 2r6a_A          191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN  232 (454)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS
T ss_pred             HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence            579999989999999999999999999999998886654434

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=94.42  E-value=0.0098  Score=59.75  Aligned_cols=33  Identities=24%  Similarity=0.255  Sum_probs=26.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .+.-+.++|++||||||+++.|.+...+..+.+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~   66 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRV   66 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEE
Confidence            456788999999999999999998766665543

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=94.20  E-value=0.018  Score=54.01  Aligned_cols=28  Identities=29%  Similarity=0.182  Sum_probs=24.0

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      .++.++.|.|++||||||+.+.|...+.
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            4567899999999999999999987553

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=94.13  E-value=0.018  Score=53.33  Aligned_cols=25  Identities=28%  Similarity=0.563  Sum_probs=21.8

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      +.+|+.+.+.|++|+||||++..+.
T Consensus        73 i~~g~~~~i~g~TGsGKTt~~~~~~   97 (235)
T 3llm_A           73 ISQNSVVIIRGATGCGKTTQVPQFI   97 (235)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHH
T ss_pred             HhcCCEEEEEeCCCCCcHHhHHHHH
Confidence            4679999999999999999887664

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=94.10  E-value=0.016  Score=54.35  Aligned_cols=22  Identities=32%  Similarity=0.623  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHhCCC
Q 011717          450 FCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      +.|.|++|+||||+.+.|.+..
T Consensus        48 vll~G~~GtGKT~la~~la~~~   69 (257)
T 1lv7_A           48 VLMVGPPGTGKTLLAKAIAGEA   69 (257)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHc
Confidence            7899999999999999998754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.84  E-value=0.026  Score=49.96  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .++++|+.|+||||+++.|+|..
T Consensus        50 ~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           50 SIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999999864

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=93.58  E-value=0.021  Score=58.40  Aligned_cols=35  Identities=29%  Similarity=0.283  Sum_probs=30.8

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .|+|.+ ..+-+||..+|.|++|+||||++++|.+.
T Consensus       140 r~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~  174 (473)
T 1sky_E          140 KVVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHN  174 (473)
T ss_dssp             HHHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHH
T ss_pred             hHHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhh
Confidence            477777 77889999999999999999999998764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=93.22  E-value=0.045  Score=52.48  Aligned_cols=24  Identities=33%  Similarity=0.405  Sum_probs=21.1

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      ++.++.|.|++||||||+.+.|..
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999964

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=93.14  E-value=0.052  Score=51.30  Aligned_cols=26  Identities=27%  Similarity=0.369  Sum_probs=22.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      ...+++|.+|+||||+++.|+|....
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~~  125 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRAS  125 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC-
T ss_pred             hheEEeCCCCCCHHHHHHHHhccccc
Confidence            57899999999999999999997653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=92.60  E-value=0.084  Score=49.64  Aligned_cols=23  Identities=35%  Similarity=0.622  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .++++|+.|+||||+++.|+|..
T Consensus        38 ~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           38 TVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            35899999999999999999954

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=92.38  E-value=0.036  Score=53.44  Aligned_cols=29  Identities=21%  Similarity=0.364  Sum_probs=24.9

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      ++.++..+.|.|++|+||||+.+.|.+..
T Consensus        45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            34567889999999999999999998754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=92.31  E-value=0.079  Score=47.00  Aligned_cols=22  Identities=18%  Similarity=0.385  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      -++++|+.|+||||+++.|++.
T Consensus        30 ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           30 KLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3679999999999999999874

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=92.26  E-value=0.055  Score=56.11  Aligned_cols=39  Identities=15%  Similarity=0.265  Sum_probs=31.9

Q ss_pred             eeEEEEeCCcEEEEECCCCCcHHHHHHHHhC--CCCCCCcc
Q 011717          439 GLWVNIAKDQLFCLLGPNGAGKTTTISCLTG--ITPVTGGD  477 (479)
Q Consensus       439 ~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG--~~~pTsG~  477 (479)
                      -+++++.++.-..+.|.+|+||||+++.|.+  +..++.|+
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~  199 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPED  199 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTT
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCce
Confidence            3678888999999999999999999998765  45555554

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=92.16  E-value=0.09  Score=57.84  Aligned_cols=30  Identities=30%  Similarity=0.612  Sum_probs=28.1

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHH
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI  464 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~  464 (479)
                      +=++|+++++++|+.+++-|+.|+||||+.
T Consensus        24 hNLkni~v~iP~~~l~viTGvSGSGKSSLa   53 (842)
T 2vf7_A           24 HNLKDISVKVPRDALVVFTGVSGSGKSSLA   53 (842)
T ss_dssp             TTCCSEEEEEESSSEEEEESSTTSSHHHHH
T ss_pred             cCCCCeeEEecCCCEEEEECCCCCCHHHHH
Confidence            349999999999999999999999999986

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=92.11  E-value=0.07  Score=48.09  Aligned_cols=21  Identities=19%  Similarity=0.363  Sum_probs=19.5

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 011717          450 FCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ++++|..|+||||+++.+++.
T Consensus        31 i~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           31 IVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999999985

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=92.02  E-value=0.044  Score=52.67  Aligned_cols=29  Identities=34%  Similarity=0.425  Sum_probs=24.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      ..+.|.|++|+||||+.+.|.+...+++|
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~   76 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEE   76 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence            57889999999999999999987655544

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=92.00  E-value=0.066  Score=48.55  Aligned_cols=22  Identities=27%  Similarity=0.321  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .++++|+.|+||||+++-|++.
T Consensus        32 ~i~i~G~~g~GKTTl~~~l~~~   53 (221)
T 2wsm_A           32 AVNIMGAIGSGKTLLIERTIER   53 (221)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5789999999999999999864

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=91.92  E-value=0.045  Score=49.64  Aligned_cols=23  Identities=30%  Similarity=0.440  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .++++|+.|+||||+++.|+|..
T Consensus        31 ~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           31 EIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             EEEEEESCHHHHHHHHHHHTTCS
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999974

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=91.86  E-value=0.093  Score=53.36  Aligned_cols=24  Identities=38%  Similarity=0.627  Sum_probs=21.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      ++.++.+.|++|+|||||..-|+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~  122 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLAR  122 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHH
Confidence            457999999999999999999984

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=91.68  E-value=0.12  Score=48.86  Aligned_cols=23  Identities=26%  Similarity=0.598  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .++++|+.|+||||+++.|+|..
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            36799999999999999999854

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=91.64  E-value=0.031  Score=57.59  Aligned_cols=33  Identities=27%  Similarity=0.476  Sum_probs=26.3

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      +.+++++.+++|  +.|.||+|+||||+.+.|.|.
T Consensus        40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~   72 (476)
T 2ce7_A           40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGE   72 (476)
T ss_dssp             HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHH
T ss_pred             HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHH
Confidence            345555666666  679999999999999999874

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=91.30  E-value=0.11  Score=47.51  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .++++|..|+||||+++.|+|..
T Consensus        31 kI~vvG~~~vGKSsLin~l~~~~   53 (228)
T 2qu8_A           31 TIILSGAPNVGKSSFMNIVSRAN   53 (228)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999863

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=91.19  E-value=0.077  Score=52.49  Aligned_cols=26  Identities=35%  Similarity=0.345  Sum_probs=22.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      ++.|.|++|.||||+++.+.+...+.
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~~~~~   71 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWELYKDK   71 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhhh
Confidence            78999999999999999998876544

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=91.03  E-value=0.11  Score=46.86  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 011717          450 FCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ++++|+.|+||||+++.|++.
T Consensus        37 i~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           37 VVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEECcCCCCHHHHHHHHHcC
Confidence            689999999999999999974

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=90.99  E-value=0.12  Score=57.24  Aligned_cols=30  Identities=33%  Similarity=0.590  Sum_probs=27.8

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHH
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTI  464 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~  464 (479)
                      +=++|+++++++++.+++-|..|+||||+-
T Consensus        32 hNLkni~v~iP~~~lvv~tG~SGSGKSSLa   61 (972)
T 2r6f_A           32 HNLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (972)
T ss_dssp             SSCCSEEEEEETTSEEEEEESTTSSHHHHH
T ss_pred             ccCCceeeeccCCcEEEEECCCCCCHHHHH
Confidence            349999999999999999999999999973

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=90.90  E-value=0.1  Score=46.42  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      -++++|+.|+||||+++.|++..
T Consensus        30 ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           30 KIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            46899999999999999998643

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=90.84  E-value=0.2  Score=48.55  Aligned_cols=34  Identities=24%  Similarity=0.349  Sum_probs=29.9

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      ..+++..+.+ .|.-..+.|+.||||||+..-|.+
T Consensus       133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            5788888888 889999999999999999887764

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=90.83  E-value=0.11  Score=51.06  Aligned_cols=35  Identities=20%  Similarity=0.105  Sum_probs=28.6

Q ss_pred             eeeeeE-EEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       436 AV~~ls-l~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .+|.+- =++++|+++.+.|++|+||||+...++..
T Consensus       110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            344432 26899999999999999999999988874

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=90.68  E-value=0.15  Score=45.65  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhC
Q 011717          449 LFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG  469 (479)
                      .++++|+.|+||||+++.+++
T Consensus        32 ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           32 KCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            367999999999999988874

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=90.38  E-value=0.13  Score=45.55  Aligned_cols=21  Identities=33%  Similarity=0.335  Sum_probs=19.2

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 011717          450 FCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ++++|+.|+||||+++.+++.
T Consensus        32 i~v~G~~~vGKSsLi~~l~~~   52 (192)
T 2b6h_A           32 ILMVGLDAAGKTTILYKLKLG   52 (192)
T ss_dssp             EEEEESTTSSHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999863

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=90.19  E-value=0.17  Score=46.05  Aligned_cols=22  Identities=32%  Similarity=0.637  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .++|+|..|+||||+++-++|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999974

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=89.86  E-value=0.12  Score=50.81  Aligned_cols=27  Identities=22%  Similarity=0.333  Sum_probs=23.3

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      +++.+.|.|++|.||||+++.+.+...
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            457889999999999999999987553

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=89.65  E-value=0.11  Score=52.93  Aligned_cols=24  Identities=38%  Similarity=0.519  Sum_probs=21.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .++++.|++|+|||||..-|++.+
T Consensus       100 ~vI~ivG~~GvGKTTla~~La~~l  123 (432)
T 2v3c_C          100 NVILLVGIQGSGKTTTAAKLARYI  123 (432)
T ss_dssp             CCEEEECCSSSSTTHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            588999999999999999998743

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=89.59  E-value=0.22  Score=45.30  Aligned_cols=25  Identities=28%  Similarity=0.324  Sum_probs=21.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ++..+.|.|+.|+||||+.+.+...
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            4578889999999999999988754

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=89.42  E-value=0.18  Score=48.97  Aligned_cols=35  Identities=29%  Similarity=0.340  Sum_probs=28.3

Q ss_pred             eeeeeE-EEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       436 AV~~ls-l~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .+|.+- =++++|+++.+.|++|+||||+...++..
T Consensus        95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~  130 (324)
T 2z43_A           95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN  130 (324)
T ss_dssp             HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence            344432 26899999999999999999999888764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=89.27  E-value=0.26  Score=47.03  Aligned_cols=24  Identities=25%  Similarity=0.257  Sum_probs=21.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      -..+++|..|+||||++|.|+|..
T Consensus       121 ~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          121 IRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEecCCCchHHHHHHHhcCc
Confidence            367899999999999999999965

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=89.25  E-value=0.15  Score=45.45  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 011717          450 FCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ++++|+.|+||||+++.|++.
T Consensus        32 i~vvG~~~vGKSsli~~l~~~   52 (201)
T 2hup_A           32 LVLVGDASVGKTCVVQRFKTG   52 (201)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhhC
Confidence            679999999999999999864

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=89.23  E-value=0.18  Score=49.67  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=20.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      -++++.|+.|+||||+++-|++.
T Consensus        80 ~~I~i~G~~G~GKSTl~~~L~~~  102 (355)
T 3p32_A           80 HRVGITGVPGVGKSTAIEALGMH  102 (355)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999754

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=89.20  E-value=0.069  Score=58.54  Aligned_cols=31  Identities=26%  Similarity=0.473  Sum_probs=25.6

Q ss_pred             EeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          444 IAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       444 v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      +..|+++.+.|+||+||||++.++.+...++
T Consensus       106 l~~~~~vii~gpTGSGKTtllp~ll~~~~~~  136 (773)
T 2xau_A          106 YQNNQIMVFVGETGSGKTTQIPQFVLFDEMP  136 (773)
T ss_dssp             HHHCSEEEEECCTTSSHHHHHHHHHHHHHCG
T ss_pred             HhCCCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence            4678999999999999999999887654443

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=89.05  E-value=0.21  Score=45.31  Aligned_cols=22  Identities=36%  Similarity=0.471  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .++++|+.|+||||+++-|++.
T Consensus        40 ~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           40 AFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5789999999999999988764

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=88.99  E-value=0.21  Score=51.67  Aligned_cols=22  Identities=41%  Similarity=0.610  Sum_probs=19.8

Q ss_pred             CcEEEEECCCCCcHHHHHHHHh
Q 011717          447 DQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       447 gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      ..++++.|++|+|||||++-|+
T Consensus       101 ~~vI~ivG~~GvGKTTl~~kLA  122 (504)
T 2j37_W          101 QNVIMFVGLQGSGKTTTCSKLA  122 (504)
T ss_dssp             -EEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4588999999999999999998

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=88.84  E-value=0.27  Score=43.77  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=21.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      ..+.|.|++|+||||+.+.|.....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            5677999999999999999886543

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=87.63  E-value=0.35  Score=44.80  Aligned_cols=21  Identities=33%  Similarity=0.479  Sum_probs=19.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHh
Q 011717          448 QLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLt  468 (479)
                      -+++|.|+-||||||..+.|.
T Consensus        30 ~~I~l~G~~GsGKsT~a~~L~   50 (243)
T 3tlx_A           30 GRYIFLGAPGSGKGTQSLNLK   50 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            478999999999999999986

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=87.55  E-value=0.28  Score=46.64  Aligned_cols=25  Identities=28%  Similarity=0.404  Sum_probs=21.5

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       447 gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      +..+.|.|++|+||||+.+.+.+..
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHh
Confidence            4567899999999999999998754

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=87.30  E-value=0.31  Score=50.91  Aligned_cols=22  Identities=41%  Similarity=0.510  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHhCCC
Q 011717          450 FCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      ++|+|..|+||||+++.|+|..
T Consensus        44 V~lvG~~~vGKSSLl~~l~~~~   65 (535)
T 3dpu_A           44 VHLIGDGMAGKTSLLKQLIGET   65 (535)
T ss_dssp             EEEESSSCSSHHHHHHHHHC--
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5799999999999999999864

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=87.08  E-value=0.35  Score=47.50  Aligned_cols=34  Identities=18%  Similarity=0.207  Sum_probs=26.8

Q ss_pred             eeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       438 ~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      +.+.+.++.-=-++|+|..+|||||+++.|++..
T Consensus       149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~  182 (342)
T 1lnz_A          149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAK  182 (342)
T ss_dssp             EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEEC
T ss_pred             hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCC
Confidence            4555665544458999999999999999999753

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=86.68  E-value=0.35  Score=44.21  Aligned_cols=22  Identities=32%  Similarity=0.490  Sum_probs=19.4

Q ss_pred             CcEEEEECCCCCcHHHHHHHHh
Q 011717          447 DQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       447 gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      .-++.|+|+-||||+|.-+.|+
T Consensus        29 ~kiI~llGpPGsGKgTqa~~L~   50 (217)
T 3umf_A           29 AKVIFVLGGPGSGKGTQCEKLV   50 (217)
T ss_dssp             CEEEEEECCTTCCHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3578899999999999988886

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=86.49  E-value=0.13  Score=45.77  Aligned_cols=22  Identities=23%  Similarity=0.271  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      -++++|+.|+||||+++.+++.
T Consensus        32 ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           32 KCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            3679999999999999888763

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=86.35  E-value=0.16  Score=49.83  Aligned_cols=35  Identities=14%  Similarity=0.113  Sum_probs=31.2

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      ..+|.+.-++++|+.+.|-|++|+||||+..-++.
T Consensus        34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~   68 (338)
T 4a1f_A           34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVL   68 (338)
T ss_dssp             HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHH
T ss_pred             hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence            57888888999999999999999999999877754

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=86.33  E-value=0.77  Score=41.31  Aligned_cols=34  Identities=26%  Similarity=0.379  Sum_probs=27.2

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      ..+.+..+.+ .|..+.+.|+.|+||||+..-|.-
T Consensus        23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~   56 (205)
T 2qmh_A           23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ   56 (205)
T ss_dssp             CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHT
T ss_pred             eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHH
Confidence            4566666665 578899999999999999887764

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=86.06  E-value=0.29  Score=50.17  Aligned_cols=22  Identities=14%  Similarity=0.336  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .++++|+.|+||||+++.|+|.
T Consensus       226 kV~ivG~~nvGKSSLln~L~~~  247 (462)
T 3geh_A          226 KVAIVGRPNVGKSSLLNAWSQS  247 (462)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            4789999999999999999984

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=85.90  E-value=0.4  Score=48.67  Aligned_cols=23  Identities=30%  Similarity=0.729  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      -++++|+.|+||||+++-|+|..
T Consensus       177 ki~lvG~~nvGKSSLin~l~~~~  199 (436)
T 2hjg_A          177 QFCLIGRPNVGKSSLVNAMLGEE  199 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             EEEEEcCCCCCHHHHHHHHhCCC
Confidence            46899999999999999999964

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=85.86  E-value=0.4  Score=46.34  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=27.5

Q ss_pred             eeeeeE-EEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          436 AIKGLW-VNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       436 AV~~ls-l~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      .+|.+- =++++|+++.+.|++|+||||+..-++.
T Consensus        86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            344443 2689999999999999999999887764

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=85.60  E-value=0.43  Score=45.36  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=19.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHh
Q 011717          448 QLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLt  468 (479)
                      -+++|.|+-||||||..+.|.
T Consensus        76 ~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           76 YVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            479999999999999999986

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=85.59  E-value=0.13  Score=45.82  Aligned_cols=22  Identities=27%  Similarity=0.459  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHhCCC
Q 011717          450 FCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      ++++|+.|+||||+++.|++..
T Consensus        36 i~vvG~~~~GKSsli~~l~~~~   57 (199)
T 3l0i_B           36 LLLIGDSGVGKSCLLLRFADDT   57 (199)
T ss_dssp             EEEECCTTSCCTTTTTSSBCCC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            5799999999999999998854

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=85.49  E-value=0.47  Score=46.79  Aligned_cols=35  Identities=17%  Similarity=0.248  Sum_probs=28.2

Q ss_pred             ceeeeeE--EEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          435 HAIKGLW--VNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       435 ~AV~~ls--l~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      ..+|.+-  =++++|+++.+.|++|+||||+..-++.
T Consensus        49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~   85 (356)
T 1u94_A           49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA   85 (356)
T ss_dssp             HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3566652  1589999999999999999999877664

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=85.44  E-value=0.19  Score=48.70  Aligned_cols=34  Identities=9%  Similarity=0.073  Sum_probs=30.5

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      ..+|++.-++++|+++.+-|+.|+||||+..-++
T Consensus        56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia   89 (315)
T 3bh0_A           56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQA   89 (315)
T ss_dssp             HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHH
T ss_pred             HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence            5788888789999999999999999999987665

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=85.19  E-value=0.43  Score=46.93  Aligned_cols=23  Identities=22%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      -++++|.-||||||+++.|+|.-
T Consensus        33 ~I~vvG~~~~GKSSLln~L~g~~   55 (353)
T 2x2e_A           33 QIAVVGGQSAGKSSVLENFVGRD   55 (353)
T ss_dssp             EEEEECBTTSSHHHHHHTTTTSC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999963

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=85.17  E-value=0.51  Score=47.56  Aligned_cols=25  Identities=28%  Similarity=0.292  Sum_probs=21.8

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      .+.+++.|.|+.||||||+.+.|.-
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3567999999999999999999864

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=85.14  E-value=0.5  Score=47.95  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=19.6

Q ss_pred             CcEEEEECCCCCcHHHHHHHHh
Q 011717          447 DQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       447 gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      ..++.+.|++|+|||||..-|+
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3588899999999999998887

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=84.95  E-value=0.42  Score=50.08  Aligned_cols=23  Identities=26%  Similarity=0.338  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .++++|+-||||||++|-|+|..
T Consensus        67 ~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           67 MVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68899999999999999999964

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=84.75  E-value=0.51  Score=46.98  Aligned_cols=33  Identities=33%  Similarity=0.438  Sum_probs=27.8

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      |+| +=+.+-+||..++.|+.|+||||++.+|+-
T Consensus       165 aID-~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~  197 (427)
T 3l0o_A          165 LID-LFAPIGKGQRGMIVAPPKAGKTTILKEIAN  197 (427)
T ss_dssp             HHH-HHSCCBTTCEEEEEECTTCCHHHHHHHHHH
T ss_pred             hhh-hcccccCCceEEEecCCCCChhHHHHHHHH
Confidence            444 346789999999999999999999998864

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=84.54  E-value=0.41  Score=47.47  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=22.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ++...+++|..|+||||++|.|+|.
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            4567899999999999999999986

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=84.45  E-value=0.42  Score=46.43  Aligned_cols=22  Identities=45%  Similarity=0.647  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHhCCC
Q 011717          450 FCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      ..|.|++|+||||+.+.+.+.+
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999998753

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=84.39  E-value=0.38  Score=48.90  Aligned_cols=25  Identities=20%  Similarity=0.308  Sum_probs=21.6

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          447 DQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       447 gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      +..+.|.|++|+||||+++.|.+..
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l  154 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYV  154 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999998744

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=84.02  E-value=0.4  Score=49.31  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .++++|+.|+||||+++.|+|.
T Consensus       235 kV~ivG~~nvGKSSLln~L~~~  256 (476)
T 3gee_A          235 STVIAGKPNAGKSTLLNTLLGQ  256 (476)
T ss_dssp             EEEEECCTTSSHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999999996

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=83.75  E-value=0.68  Score=41.59  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .+.|.|+.|.||||+.+.+...
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6789999999999999988753

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=83.63  E-value=0.44  Score=46.41  Aligned_cols=23  Identities=30%  Similarity=0.273  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .++++|+.|+||||+++-|++..
T Consensus       167 kI~ivG~~~vGKSsLl~~l~~~~  189 (329)
T 3o47_A          167 RILMVGLDAAGKTTILYKLKLGE  189 (329)
T ss_dssp             EEEEEESTTSSHHHHHHHTCSSC
T ss_pred             eEEEECCCCccHHHHHHHHhCCC
Confidence            47899999999999999998753

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=83.53  E-value=0.56  Score=49.80  Aligned_cols=22  Identities=36%  Similarity=0.374  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      -++++||.|+||||+++-|++.
T Consensus       169 kV~ivG~~n~GKSTLin~Ll~~  190 (611)
T 3izq_1          169 SFVVLGHVDAGKSTLMGRLLYD  190 (611)
T ss_dssp             EEEEECCSSSCHHHHHHHHHSC
T ss_pred             EEEEEECCCCCHHHHHHHHHHh
Confidence            5789999999999999999876

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=83.42  E-value=0.54  Score=45.34  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      ..+.|.|+.|.||||+.+.|.+..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~~   61 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNEA   61 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHH
Confidence            456788999999999999998754

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=82.78  E-value=0.45  Score=47.15  Aligned_cols=25  Identities=20%  Similarity=0.227  Sum_probs=22.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ++...+++|..|+||||++|.|+|.
T Consensus       159 ~~~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          159 GGKDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             TTSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             ccceEEEecCCCCChhHHHHHHHhh
Confidence            5667899999999999999999985

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=82.76  E-value=0.84  Score=39.36  Aligned_cols=24  Identities=29%  Similarity=0.389  Sum_probs=19.7

Q ss_pred             CcEEEEECCCCCcHHHHHHHHhCC
Q 011717          447 DQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       447 gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      +..+.|.|+.|.||||+.+.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            356779999999999999887653

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=82.56  E-value=0.94  Score=44.20  Aligned_cols=27  Identities=33%  Similarity=0.570  Sum_probs=22.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      ++.++.|+||.|+||||+-.-|+-.+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            446899999999999999999987553

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=82.36  E-value=0.85  Score=46.57  Aligned_cols=34  Identities=32%  Similarity=0.319  Sum_probs=28.4

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      |+|.+ +.+-+||..++.|..|.||||++.+|.--
T Consensus       143 ~ID~l-~pigkGQr~~Ifgg~G~GKT~L~~~i~~~  176 (482)
T 2ck3_D          143 VVDLL-APYAKGGKIGLFGGAGVGKTVLIMELINN  176 (482)
T ss_dssp             HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEecc-cccccCCeeeeecCCCCChHHHHHHHHHh
Confidence            44433 67889999999999999999999988653

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=82.28  E-value=0.87  Score=49.13  Aligned_cols=22  Identities=32%  Similarity=0.443  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .++++|+-||||||++|.|+|.
T Consensus        71 ~V~VvG~~naGKSSLlNaLlg~   92 (695)
T 2j69_A           71 RLLVLGDMKRGKSTFLNALIGE   92 (695)
T ss_dssp             EEEEECCTTSCHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999995

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=82.24  E-value=0.79  Score=48.27  Aligned_cols=31  Identities=29%  Similarity=0.434  Sum_probs=24.7

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      .|++.+.    .+.++.+.|++|+|||||++.|..
T Consensus       196 ~Av~~~~----~~~~~~I~G~pGTGKTt~i~~l~~  226 (574)
T 3e1s_A          196 SVLDQLA----GHRLVVLTGGPGTGKSTTTKAVAD  226 (574)
T ss_dssp             HHHHHHT----TCSEEEEECCTTSCHHHHHHHHHH
T ss_pred             HHHHHHH----hCCEEEEEcCCCCCHHHHHHHHHH
Confidence            3555432    568999999999999999998865

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=82.18  E-value=0.71  Score=43.39  Aligned_cols=27  Identities=30%  Similarity=0.377  Sum_probs=22.3

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .++..+-|.|+.|.||||+.+.+....
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            345568899999999999999997643

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=81.90  E-value=0.58  Score=46.49  Aligned_cols=23  Identities=35%  Similarity=0.426  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      -+||+|..-+||||+||.|||.-
T Consensus        74 ~V~ivG~PNvGKSTL~n~Lt~~~   96 (376)
T 4a9a_A           74 SVGFVGFPSVGKSTLLSKLTGTE   96 (376)
T ss_dssp             EEEEECCCCHHHHHHHHHHHSBC
T ss_pred             eEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999964

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=81.70  E-value=0.9  Score=41.48  Aligned_cols=31  Identities=26%  Similarity=0.299  Sum_probs=24.7

Q ss_pred             eeeeeEE-EEeCCcEEEEECCCCCcHHHHHHH
Q 011717          436 AIKGLWV-NIAKDQLFCLLGPNGAGKTTTISC  466 (479)
Q Consensus       436 AV~~lsl-~v~~gei~~LLG~NGAGKTTt~~m  466 (479)
                      .+|.+-= ++++|+++-+-|+.|+||||+.--
T Consensus        18 ~LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~   49 (251)
T 2zts_A           18 GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQ   49 (251)
T ss_dssp             TTGGGTTTSEETTCEEEEECCTTSSHHHHHHH
T ss_pred             HHHHhhcCCCCCCeEEEEEeCCCCCHHHHHHH
Confidence            3554433 689999999999999999998643

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=81.05  E-value=1  Score=47.49  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=21.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHhCCC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      -+++++|.-|+||||++|-|+|..
T Consensus        39 ~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           39 VVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             cEEEEECCCCCCHHHHHHhHcCCC
Confidence            467899999999999999999964

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=80.37  E-value=1.1  Score=41.44  Aligned_cols=25  Identities=32%  Similarity=0.367  Sum_probs=20.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ....+-|.|+.|.||||+.+.+...
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3445779999999999999998753

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=80.34  E-value=0.41  Score=48.73  Aligned_cols=36  Identities=14%  Similarity=0.114  Sum_probs=31.3

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCC
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ..+|.+.-++++|+++.+-|+.|+||||+..-++..
T Consensus       188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~  223 (444)
T 2q6t_A          188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQN  223 (444)
T ss_dssp             HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred             HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence            468888878999999999999999999998776653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	479
d1vpla_	238	c.37.1.12 (A:) Putative ABC transporter TM0544 {Th	6e-11
d1g6ha_	254	c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann	1e-10
d1v43a3	239	c.37.1.12 (A:7-245) Hypothetical protein PH0022, N	7e-10
d1ji0a_	240	c.37.1.12 (A:) Branched chain aminoacid ABC transp	9e-10
d1oxxk2	242	c.37.1.12 (K:1-242) Glucose transport protein GlcV	8e-09
d2awna2	232	c.37.1.12 (A:4-235) Maltose transport protein MalK	1e-08
d1b0ua_	258	c.37.1.12 (A:) ATP-binding subunit of the histidin	1e-08
d3dhwc1	240	c.37.1.12 (C:1-240) Methionine import ATP-binding	1e-08
d1l2ta_	230	c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann	4e-08
d1g2912	240	c.37.1.12 (1:1-240) Maltose transport protein MalK	6e-08
d3d31a2	229	c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor	8e-08
d1l7vc_	231	c.37.1.12 (C:) ABC transporter involved in vitamin	1e-07
d1sgwa_	200	c.37.1.12 (A:) Putative ABC transporter PF0895 {Py	1e-07
d2hyda1	255	c.37.1.12 (A:324-578) Putative multidrug export AT	9e-07
d1r0wa_	281	c.37.1.12 (A:) Cystic fibrosis transmembrane condu	2e-06
d3b60a1	253	c.37.1.12 (A:329-581) Multidrug resistance ABC tra	4e-06
d1mv5a_	242	c.37.1.12 (A:) Multidrug resistance ABC transporte	5e-06
d1jj7a_	251	c.37.1.12 (A:) Peptide transporter Tap1, C-termina	9e-06
d2onka1	240	c.37.1.12 (A:1-240) Molybdate/tungstate import ATP	2e-05
d2pmka1	241	c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro	3e-04
d1ye8a1	178	c.37.1.11 (A:1-178) Hypothetical kinase-like prote	0.001

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

 Score = 60.4 bits (146), Expect = 6e-11
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 15/71 (21%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
           AV ++ L K                      +KG+   I + ++F L+GPNGAGKTTT+ 
Sbjct: 2   AVVVKDLRKRIGKK---------------EILKGISFEIEEGEIFGLIGPNGAGKTTTLR 46

Query: 466 CLTGITPVTGG 476
            ++ +   + G
Sbjct: 47  IISTLIKPSSG 57

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 59.6 bits (144), Expect = 1e-10
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 15/71 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++   +VK F                   A+ G+ +++ K  +  ++GPNG+GK+T I+ 
Sbjct: 5   LRTENIVKYFGEF---------------KALDGVSISVNKGDVTLIIGPNGSGKSTLINV 49

Query: 467 LTGITPVTGGD 477
           +TG      G 
Sbjct: 50  ITGFLKADEGR 60

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 57.1 bits (138), Expect = 7e-10
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 15/73 (20%)

Query: 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
           V V++  L K F                   A+  L + I   +   LLGP+G GKTTT+
Sbjct: 5   VEVKLENLTKRFGNF---------------TAVNKLNLTIKDGEFLVLLGPSGCGKTTTL 49

Query: 465 SCLTGITPVTGGD 477
             + G+   T G 
Sbjct: 50  RMIAGLEEPTEGR 62

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

 Score = 56.8 bits (137), Expect = 9e-10
 Identities = 19/71 (26%), Positives = 35/71 (49%), Gaps = 15/71 (21%)

Query: 404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTT 463
           ++ ++++ L   +                  HAIKG+ + + + Q+  L+G NGAGKTTT
Sbjct: 4   DIVLEVQSLHVYYGAI---------------HAIKGIDLKVPRGQIVTLIGANGAGKTTT 48

Query: 464 ISCLTGITPVT 474
           +S + G+    
Sbjct: 49  LSAIAGLVRAQ 59

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

 Score = 53.9 bits (129), Expect = 8e-09
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 13/72 (18%)

Query: 405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTI 464
           V + ++ + K F   +               A+  + +NI   + F +LGP+GAGKTT +
Sbjct: 2   VRIIVKNVSKVFKKGKV-------------VALDNVNINIENGERFGILGPSGAGKTTFM 48

Query: 465 SCLTGITPVTGG 476
             + G+   + G
Sbjct: 49  RIIAGLDVPSTG 60

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 53.4 bits (128), Expect = 1e-08
 Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 15/71 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           VQ++ + K +                     K + ++I + +    +GP+G GK+T +  
Sbjct: 1   VQLQNVTKAWGEV---------------VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRM 45

Query: 467 LTGITPVTGGD 477
           + G+  +T GD
Sbjct: 46  IAGLETITSGD 56

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

 Score = 53.3 bits (128), Expect = 1e-08
 Identities = 12/71 (16%), Positives = 28/71 (39%), Gaps = 15/71 (21%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           + +  L K + G                  +KG+ +      +  ++G +G+GK+T + C
Sbjct: 3   LHVIDLHKRYGGH---------------EVLKGVSLQARAGDVISIIGSSGSGKSTFLRC 47

Query: 467 LTGITPVTGGD 477
           +  +   + G 
Sbjct: 48  INFLEKPSEGA 58

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

 Score = 53.0 bits (127), Expect = 1e-08
 Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 11/71 (15%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           +++  + K F            Q T    A+  + +++   Q++ ++G +GAGK+T I C
Sbjct: 2   IKLSNITKVFH-----------QGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRC 50

Query: 467 LTGITPVTGGD 477
           +  +   T G 
Sbjct: 51  VNLLERPTEGS 61

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 14/71 (19%), Positives = 36/71 (50%), Gaps = 11/71 (15%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++++ + KT+                  +A+K + +NI + +   ++GP+G+GK+T ++ 
Sbjct: 2   IKLKNVTKTYK-----------MGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNI 50

Query: 467 LTGITPVTGGD 477
           +  +   T G+
Sbjct: 51  IGCLDKPTEGE 61

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

 Score = 51.1 bits (122), Expect = 6e-08
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 15/72 (20%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            V++  + K F                   A++ + + +   +   LLGP+G GKTTT+ 
Sbjct: 3   GVRLVDVWKVFGEV---------------TAVREMSLEVKDGEFMILLGPSGCGKTTTLR 47

Query: 466 CLTGITPVTGGD 477
            + G+   + G 
Sbjct: 48  MIAGLEEPSRGQ 59

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

 Score = 50.8 bits (121), Expect = 8e-08
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 16/69 (23%)

Query: 407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISC 466
           ++I  L + +                   ++  L + +   + F +LGP GAGKT  +  
Sbjct: 2   IEIESLSRKWKN----------------FSLDNLSLKVESGEYFVILGPTGAGKTLFLEL 45

Query: 467 LTGITPVTG 475
           + G      
Sbjct: 46  IAGFHVPDS 54

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

 Score = 50.3 bits (120), Expect = 1e-07
 Identities = 13/41 (31%), Positives = 23/41 (56%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475
             +  L   +   ++  L+GPNGAGK+T ++ + G+T   G
Sbjct: 13  TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKG 53

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 49.5 bits (118), Expect = 1e-07
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTG 475
             ++ + + I K  +    GPNG GKTT +  ++       
Sbjct: 15  PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLK 55

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

 Score = 47.9 bits (114), Expect = 9e-07
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 13/78 (16%)

Query: 400 IPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAG 459
           I      + I  +   +                    +K + ++I K +    +G +G G
Sbjct: 10  IEIKQGRIDIDHVSFQYNDNEA-------------PILKDINLSIEKGETVAFVGMSGGG 56

Query: 460 KTTTISCLTGITPVTGGD 477
           K+T I+ +     VT G 
Sbjct: 57  KSTLINLIPRFYDVTSGQ 74

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 11/42 (26%), Positives = 22/42 (52%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
            +K + +NI K ++  + G  G+GKT+ +  + G    + G 
Sbjct: 51  VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI 92

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 15/75 (20%), Positives = 30/75 (40%), Gaps = 13/75 (17%)

Query: 400 IPDPNVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAG 459
           I      ++ R +  T+PG                 A++ + + I   +   L+G +G+G
Sbjct: 7   IDRATGDLEFRNVTFTYPGREV-------------PALRNINLKIPAGKTVALVGRSGSG 53

Query: 460 KTTTISCLTGITPVT 474
           K+T  S +T    + 
Sbjct: 54  KSTIASLITRFYDID 68

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 10/43 (23%), Positives = 18/43 (41%)

Query: 435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGD 477
             ++ +      + +    GP+G GK+T  S L      T G+
Sbjct: 16  QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 12/72 (16%)

Query: 406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTIS 465
            VQ + +   +P    +              ++GL   +   ++  L+GPNG+GK+T  +
Sbjct: 11  LVQFQDVSFAYPNRPDV------------LVLQGLTFTLRPGEVTALVGPNGSGKSTVAA 58

Query: 466 CLTGITPVTGGD 477
            L  +   TGG 
Sbjct: 59  LLQNLYQPTGGQ 70

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 442 VNIAKDQ-LFCLLGPNGAGKTTTISCLTGITPVTGGD 477
           V+    +    LLGP GAGK+  +  + GI     G+
Sbjct: 18  VDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGE 54

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 6/39 (15%), Positives = 19/39 (48%)

Query: 436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVT 474
            +  + ++I + ++  ++G +G+GK+T    +       
Sbjct: 18  ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE 56

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 6/25 (24%), Positives = 9/25 (36%)

Query: 452 LLGPNGAGKTTTISCLTGITPVTGG 476
           + G  G GKTT +  +         
Sbjct: 5   ITGEPGVGKTTLVKKIVERLGKRAI 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	479
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	99.71
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	99.7
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	99.69
d1g2912	240	Maltose transport protein MalK, N-terminal domain	99.68
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	99.66
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	99.66
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	99.65
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	99.63
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	99.63
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	99.52
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	99.52
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	99.49
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	99.46
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.42
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.27
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.54
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.15
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	93.77
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	93.31
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	93.08
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	92.15
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	90.86
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	90.83
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	90.5
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	90.47
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	89.79
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	89.62
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	89.57
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	88.28
d1xpua3	289	Transcription termination factor Rho, ATPase domai	88.25
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	87.85
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	86.55
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	86.09
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	86.0
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	84.25
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	83.86
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	83.67
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	82.66
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	82.32
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	81.03
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	80.87
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	80.82
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	80.46

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=99.71  E-value=2.8e-18  Score=160.21  Aligned_cols=61  Identities=33%  Similarity=0.607  Sum_probs=56.6

Q ss_pred             CceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          404 NVAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       404 ~~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      +..++++||+|.|++               ++||+|+||+|++|||+||+||||||||||+++|+|+++|++|+++
T Consensus         4 d~~Lev~~l~k~yg~---------------~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~   64 (240)
T d1ji0a_           4 DIVLEVQSLHVYYGA---------------IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII   64 (240)
T ss_dssp             SEEEEEEEEEEEETT---------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             ceEEEEeeEEEEECC---------------EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEE
Confidence            568999999999953               2699999999999999999999999999999999999999999873

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.70  E-value=5.5e-18  Score=157.00  Aligned_cols=59  Identities=34%  Similarity=0.602  Sum_probs=55.0

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .|+++||+|.|++               +.||+|+||+|++||++||+|||||||||+++||+|+++||+|+++
T Consensus         6 ~I~v~nlsk~yg~---------------~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~   64 (239)
T d1v43a3           6 EVKLENLTKRFGN---------------FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY   64 (239)
T ss_dssp             CEEEEEEEEEETT---------------EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             eEEEEEEEEEECC---------------EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEE
Confidence            3899999999953               2799999999999999999999999999999999999999999874

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=99.69  E-value=8e-18  Score=156.75  Aligned_cols=58  Identities=34%  Similarity=0.564  Sum_probs=54.5

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      +|+|+||+|.|++.               +||+|+||+|++|||+||+|||||||||++++|+|+++|++|++
T Consensus         2 aI~v~nl~k~yg~~---------------~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i   59 (238)
T d1vpla_           2 AVVVKDLRKRIGKK---------------EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV   59 (238)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             CEEEEeEEEEECCE---------------EEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence            58999999999532               69999999999999999999999999999999999999999986

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=99.68  E-value=1e-17  Score=155.42  Aligned_cols=59  Identities=27%  Similarity=0.518  Sum_probs=55.1

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .|+++||+|.|++               +.||+|+||+|++||++||+|||||||||++++|+|+++||+|+++
T Consensus         3 ~i~v~nl~k~yg~---------------~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~   61 (240)
T d1g2912           3 GVRLVDVWKVFGE---------------VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY   61 (240)
T ss_dssp             EEEEEEEEEEETT---------------EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEE
T ss_pred             cEEEEeEEEEECC---------------EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEE
Confidence            5899999999953               2699999999999999999999999999999999999999999873

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.66  E-value=1.8e-17  Score=156.11  Aligned_cols=59  Identities=29%  Similarity=0.576  Sum_probs=55.1

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .++++||+|.|++               ++||+|+||+|++|||+||+|||||||||++++|+|+++|++|+++
T Consensus         4 iL~v~nlsk~yg~---------------~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~   62 (254)
T d1g6ha_           4 ILRTENIVKYFGE---------------FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY   62 (254)
T ss_dssp             EEEEEEEEEEETT---------------EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             eEEEEEEEEEECC---------------eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEE
Confidence            5899999999954               2699999999999999999999999999999999999999999873

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.66  E-value=1.9e-17  Score=152.79  Aligned_cols=62  Identities=23%  Similarity=0.460  Sum_probs=56.0

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      |+++||+|.|+.+           ++.+.||+|+||+|++||++||+|||||||||+++||+|+.+||+|+++
T Consensus         2 I~i~nlsk~y~~~-----------~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~   63 (230)
T d1l2ta_           2 IKLKNVTKTYKMG-----------EEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVY   63 (230)
T ss_dssp             EEEEEEEEEEEET-----------TEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EEEEeEEEEeCCC-----------CeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeE
Confidence            7899999999643           2345799999999999999999999999999999999999999999874

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=3.9e-17  Score=151.48  Aligned_cols=62  Identities=24%  Similarity=0.490  Sum_probs=56.0

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ++++||+|+|+.+           ++.+.||+|+||+|++||++||+|+|||||||+++||+|+.+||+|+++
T Consensus         2 i~v~nlsk~y~~~-----------~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~   63 (240)
T d3dhwc1           2 IKLSNITKVFHQG-----------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVL   63 (240)
T ss_dssp             EEEEEEEEEEECS-----------SCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             EEEEeEEEEeCCC-----------CeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceE
Confidence            7899999999643           2345799999999999999999999999999999999999999999863

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.63  E-value=5e-17  Score=150.60  Aligned_cols=61  Identities=28%  Similarity=0.496  Sum_probs=55.4

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .|+++||+|.|+++             .+.||+|+||+|++||++||+|||||||||+++||+|+.+||+|+++
T Consensus         3 ~i~v~nlsk~y~~g-------------~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~   63 (242)
T d1oxxk2           3 RIIVKNVSKVFKKG-------------KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY   63 (242)
T ss_dssp             CEEEEEEEEEEGGG-------------TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEE
T ss_pred             EEEEEeEEEEECCC-------------CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEE
Confidence            38999999999532             24799999999999999999999999999999999999999999874

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.63  E-value=9.8e-17  Score=150.96  Aligned_cols=59  Identities=20%  Similarity=0.459  Sum_probs=54.7

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .++++||+|.|++.               .||+|+||+|++||++||+|+|||||||++++|+|+.+||+|+++
T Consensus         2 ~Lev~nl~k~yg~~---------------~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~   60 (258)
T d1b0ua_           2 KLHVIDLHKRYGGH---------------EVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII   60 (258)
T ss_dssp             CEEEEEEEEEETTE---------------EEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             eEEEEEEEEEECCE---------------EEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEE
Confidence            38999999999532               699999999999999999999999999999999999999999873

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=4.7e-15  Score=138.92  Aligned_cols=63  Identities=27%  Similarity=0.454  Sum_probs=56.7

Q ss_pred             ceEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          405 VAVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       405 ~~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ..|+++||++.|++.            +++.|++|+||+|++||++|++|+|||||||++++|+|+++|++|+++
T Consensus        10 g~I~~~nvsf~Y~~~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~   72 (251)
T d1jj7a_          10 GLVQFQDVSFAYPNR------------PDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLL   72 (251)
T ss_dssp             CCEEEEEEEECCTTS------------TTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             ceEEEEEEEEECCCC------------CCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEE
Confidence            469999999999653            123699999999999999999999999999999999999999999863

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=99.52  E-value=4.9e-15  Score=138.07  Aligned_cols=59  Identities=19%  Similarity=0.345  Sum_probs=54.1

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      ++++||++.|+++              +.+++|+||++++||++|++|+|||||||++++|+|+++|++|+++
T Consensus         2 le~knvsf~Y~~~--------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~   60 (242)
T d1mv5a_           2 LSARHVDFAYDDS--------------EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT   60 (242)
T ss_dssp             EEEEEEEECSSSS--------------SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEE
T ss_pred             EEEEEEEEECCCC--------------CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEE
Confidence            7899999999643              1589999999999999999999999999999999999999999863

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=1.4e-14  Score=134.67  Aligned_cols=60  Identities=13%  Similarity=0.254  Sum_probs=54.6

Q ss_pred             EEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          407 VQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       407 i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      |+++||++.|++..             ..+++|+||+|++||++|++|+|||||||++++|+|+++|++|+++
T Consensus         2 I~~~nvsf~Y~~~~-------------~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~   61 (241)
T d2pmka1           2 ITFRNIRFRYKPDS-------------PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL   61 (241)
T ss_dssp             EEEEEEEEESSTTS-------------CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEE
T ss_pred             eEEEEEEEEeCCCC-------------cceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEE
Confidence            78999999996432             2589999999999999999999999999999999999999999863

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.46  E-value=1.8e-14  Score=135.15  Aligned_cols=61  Identities=25%  Similarity=0.443  Sum_probs=55.7

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCcccC
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDGC  479 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a~  479 (479)
                      .|+++||++.|++.             ...|++|+||.|++||++||+|+|||||||++++|+|+++|++|+++
T Consensus        13 ~I~~~nvsf~Y~~~-------------~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~   73 (253)
T d3b60a1          13 DLEFRNVTFTYPGR-------------EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL   73 (253)
T ss_dssp             CEEEEEEEECSSSS-------------SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEE
T ss_pred             EEEEEEEEEEeCCC-------------CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEE
Confidence            49999999999653             12699999999999999999999999999999999999999999873

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.42  E-value=4.9e-14  Score=131.94  Aligned_cols=60  Identities=22%  Similarity=0.346  Sum_probs=55.3

Q ss_pred             eEEEecceEEcCCCCccccccccCCCCCcceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          406 AVQIRGLVKTFPGTRKIGCCCKCQKTSPYHAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       406 ~i~i~~l~K~y~~~~~~~~~~~~~~~~~~~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      .|+++||++.|+++.             ..+++|+||+|++||++|++|+|||||||++++|+|+++|++|++
T Consensus        16 ~I~~~nvsf~Y~~~~-------------~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I   75 (255)
T d2hyda1          16 RIDIDHVSFQYNDNE-------------APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI   75 (255)
T ss_dssp             CEEEEEEEECSCSSS-------------CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE
T ss_pred             EEEEEEEEEEeCCCC-------------CcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcccccc
Confidence            599999999996542             258999999999999999999999999999999999999999986

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=9.2e-13  Score=125.15  Aligned_cols=44  Identities=25%  Similarity=0.428  Sum_probs=42.8

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHhCCCCCCCccc
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLTGITPVTGGDG  478 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG~a  478 (479)
                      ++++|+||+|++||++||+|+|||||||++++|+|+++||+|++
T Consensus        50 pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I   93 (281)
T d1r0wa_          50 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII   93 (281)
T ss_dssp             EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             eEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEE
Confidence            58999999999999999999999999999999999999999976

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.54  E-value=0.00077  Score=60.05  Aligned_cols=28  Identities=18%  Similarity=0.366  Sum_probs=25.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCCC
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITPV  473 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~p  473 (479)
                      +|++.+|+|+.|+||||++|-|.|....
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~  121 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLKL  121 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCCC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhhh
Confidence            6899999999999999999999986443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.15  E-value=0.00055  Score=61.25  Aligned_cols=31  Identities=16%  Similarity=0.353  Sum_probs=22.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHhCCCCCCCc
Q 011717          446 KDQLFCLLGPNGAGKTTTISCLTGITPVTGG  476 (479)
Q Consensus       446 ~gei~~LLG~NGAGKTTt~~mLtG~~~pTsG  476 (479)
                      +|++..|+|+.|+||||++|.|.|.....-|
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~  126 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTN  126 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC-------
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHhhhc
Confidence            5889999999999999999999997544433

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.77  E-value=0.021  Score=50.82  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=24.5

Q ss_pred             eeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          436 AIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       436 AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      .-|+++++ +.+.+..|-|||.+||||.++.+.
T Consensus        31 VpNdi~l~-~~~~~~iiTGpN~~GKSt~lk~i~   62 (234)
T d1wb9a2          31 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTA   62 (234)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHH
T ss_pred             cceeEEEC-CCceEEEEeccCchhhHHHHHHHH
Confidence            34556555 335788999999999999999864

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.31  E-value=0.026  Score=49.90  Aligned_cols=28  Identities=32%  Similarity=0.431  Sum_probs=22.2

Q ss_pred             eeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          438 KGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       438 ~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      ||+.++   +++..|-|||.+||||.++.+.
T Consensus        29 Ndi~~~---~~~~iiTGpN~~GKSt~lk~i~   56 (224)
T d1ewqa2          29 NDLEMA---HELVLITGPNMAGKSTFLRQTA   56 (224)
T ss_dssp             EEEEES---SCEEEEESCSSSSHHHHHHHHH
T ss_pred             ceEEeC---CcEEEEECCCccccchhhhhhH
Confidence            445552   4689999999999999999653

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=93.08  E-value=0.021  Score=51.63  Aligned_cols=21  Identities=29%  Similarity=0.678  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 011717          450 FCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ..|+|..|+||||++|.|.|.
T Consensus        35 I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          35 ILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCcHHHHHHHHhCC
Confidence            679999999999999999995

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=92.15  E-value=0.034  Score=52.09  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=19.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHh
Q 011717          448 QLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLt  468 (479)
                      -+.|+.|+.||||||+++-|+
T Consensus        55 ~~IgitG~pGaGKSTLi~~l~   75 (327)
T d2p67a1          55 LRLGVTGTPGAGKSTFLEAFG   75 (327)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHH
Confidence            478999999999999999987

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=90.86  E-value=0.048  Score=48.72  Aligned_cols=24  Identities=38%  Similarity=0.408  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGITP  472 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~~  472 (479)
                      .+-|.||.|+||||+.+.|++.+.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            467999999999999999988653

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=90.83  E-value=0.035  Score=51.89  Aligned_cols=32  Identities=31%  Similarity=0.423  Sum_probs=26.5

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHHHHhCCCCCC
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTISCLTGITPVT  474 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~mLtG~~~pT  474 (479)
                      .|..+.-+.+-|+-|+||||+++.|.+..+|.
T Consensus       162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~  193 (323)
T d1g6oa_         162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE  193 (323)
T ss_dssp             HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             HHHhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence            34445557889999999999999999998874

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=90.50  E-value=0.032  Score=50.54  Aligned_cols=34  Identities=15%  Similarity=0.199  Sum_probs=29.7

Q ss_pred             ceeeeeEEEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          435 HAIKGLWVNIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       435 ~AV~~lsl~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      ..+|++.-++.+||++.+-|+.|+||||+..-|.
T Consensus        23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la   56 (277)
T d1cr2a_          23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA   56 (277)
T ss_dssp             TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            4688888789999999999999999999876554

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.47  E-value=0.081  Score=50.84  Aligned_cols=21  Identities=38%  Similarity=0.711  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 011717          450 FCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      ++++|..||||||++|-|+|.
T Consensus        59 Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          59 VAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             EEEEECTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            589999999999999999994

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.79  E-value=0.082  Score=46.21  Aligned_cols=20  Identities=40%  Similarity=0.632  Sum_probs=17.9

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 011717          450 FCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG  469 (479)
                      +-|.||+|.||||+.++|.-
T Consensus        48 lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          48 LLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEESCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            57999999999999999864

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.62  E-value=0.089  Score=48.97  Aligned_cols=22  Identities=36%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHhC
Q 011717          448 QLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      -+.|+.|+-||||||++.-|.-
T Consensus        52 ~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          52 IRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEeeeCCCCCCHHHHHHHHHH
Confidence            4789999999999999998863

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=89.57  E-value=0.11  Score=42.90  Aligned_cols=25  Identities=36%  Similarity=0.368  Sum_probs=21.9

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      ++|.++.|-|.=||||||..+-+.-
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~   55 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHh
Confidence            4788999999999999999987753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.28  E-value=0.093  Score=46.16  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=21.1

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHH
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTIS  465 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~  465 (479)
                      ++++|+++-+.|+.|+||||+.-
T Consensus        32 Glp~G~~~li~G~pGsGKT~~~l   54 (254)
T d1pzna2          32 GIETQAITEVFGEFGSGKTQLAH   54 (254)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHH
T ss_pred             CccCCEEEEEEcCCCCCHHHHHH
Confidence            48999999999999999999854

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=88.25  E-value=0.12  Score=46.99  Aligned_cols=27  Identities=26%  Similarity=0.338  Sum_probs=24.7

Q ss_pred             EEEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          442 VNIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       442 l~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      +.+-+||-.++.|+.|.||||++.+|+
T Consensus        38 ~PigrGQr~~I~g~~g~GKT~l~~~i~   64 (289)
T d1xpua3          38 SPIGRGQRGLIVAPPKAGKTMLLQNIA   64 (289)
T ss_dssp             SCCBTTCEEEEEECSSSSHHHHHHHHH
T ss_pred             ccccCCCeeeEeCCCCCCHHHHHHHHH
Confidence            467789999999999999999999986

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.85  E-value=0.16  Score=44.81  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .+-|-||.|.||||+.+.|+...
T Consensus        54 ~lll~GPpG~GKTt~a~~la~~~   76 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQEL   76 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            46689999999999999998743

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.55  E-value=0.17  Score=43.89  Aligned_cols=26  Identities=19%  Similarity=0.295  Sum_probs=23.4

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      ++++|+++-|.|+.|+||||+..-+.
T Consensus        30 Gi~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          30 GVETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            59999999999999999999987654

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=86.09  E-value=0.19  Score=43.62  Aligned_cols=26  Identities=19%  Similarity=0.261  Sum_probs=22.9

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      ++++|+++-|.|+.|+||||+.--++
T Consensus        30 Gl~~G~l~~i~G~~G~GKT~~~l~~a   55 (258)
T d2i1qa2          30 GLESQSVTEFAGVFGSGKTQIMHQSC   55 (258)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             CccCCeEEEEEeCCCCCHHHHHHHHH
Confidence            38999999999999999999976554

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.00  E-value=0.14  Score=44.88  Aligned_cols=26  Identities=23%  Similarity=0.185  Sum_probs=22.9

Q ss_pred             EEeCCcEEEEECCCCCcHHHHHHHHh
Q 011717          443 NIAKDQLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       443 ~v~~gei~~LLG~NGAGKTTt~~mLt  468 (479)
                      ++++|+++-+.|+.|+||||+---+.
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~   58 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLC   58 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence            58899999999999999999976554

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.25  E-value=0.22  Score=43.11  Aligned_cols=20  Identities=40%  Similarity=0.737  Sum_probs=17.1

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 011717          450 FCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG  469 (479)
                      .-|-||.|.||||+.++|.-
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~   58 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAH   58 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHH
Confidence            35789999999999998763

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=83.86  E-value=0.26  Score=45.25  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Q 011717          449 LFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       449 i~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      ++|+-|+-||||||+-+.|.-++
T Consensus        82 iIGIaG~sgSGKSTla~~L~~lL  104 (308)
T d1sq5a_          82 IISIAGSVAVGKSTTARVLQALL  104 (308)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCCcHHHHHHHHHH
Confidence            88999999999999998887654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.67  E-value=0.28  Score=42.49  Aligned_cols=20  Identities=50%  Similarity=0.778  Sum_probs=17.5

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 011717          450 FCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG  469 (479)
                      .-|-||.|.||||+.+.|+-
T Consensus        36 lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHH
Confidence            45889999999999999874

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.66  E-value=0.23  Score=43.52  Aligned_cols=20  Identities=45%  Similarity=0.697  Sum_probs=17.3

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 011717          450 FCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG  469 (479)
                      .-|-||.|.||||+.+.++-
T Consensus        36 lll~Gp~G~GKTt~~~~la~   55 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLE   55 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            46899999999999988753

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=82.32  E-value=0.36  Score=42.43  Aligned_cols=21  Identities=24%  Similarity=0.305  Sum_probs=18.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHh
Q 011717          448 QLFCLLGPNGAGKTTTISCLT  468 (479)
Q Consensus       448 ei~~LLG~NGAGKTTt~~mLt  468 (479)
                      +++.+.|+-|.||||+++-+.
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~   50 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGI   50 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHH
Confidence            578899999999999998764

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=81.03  E-value=0.35  Score=42.07  Aligned_cols=21  Identities=38%  Similarity=0.518  Sum_probs=18.0

Q ss_pred             EEEECCCCCcHHHHHHHHhCC
Q 011717          450 FCLLGPNGAGKTTTISCLTGI  470 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG~  470 (479)
                      .-|-||.|.||||+.+.|...
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            357899999999999998754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=80.87  E-value=0.43  Score=45.49  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=21.7

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhCCC
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTGIT  471 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG~~  471 (479)
                      .++-.+-+-||.|+|||||+.-+....
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhh
Confidence            345578899999999999998876644

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=80.82  E-value=0.43  Score=48.82  Aligned_cols=25  Identities=28%  Similarity=0.396  Sum_probs=22.2

Q ss_pred             eCCcEEEEECCCCCcHHHHHHHHhC
Q 011717          445 AKDQLFCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       445 ~~gei~~LLG~NGAGKTTt~~mLtG  469 (479)
                      .++||+.+.|..|||||++.++|.-
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~  108 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQ  108 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            4679999999999999999998843

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.46  E-value=0.37  Score=41.57  Aligned_cols=20  Identities=45%  Similarity=0.773  Sum_probs=17.5

Q ss_pred             EEEECCCCCcHHHHHHHHhC
Q 011717          450 FCLLGPNGAGKTTTISCLTG  469 (479)
Q Consensus       450 ~~LLG~NGAGKTTt~~mLtG  469 (479)
                      .-|-||.|.||||+.++|+.
T Consensus        38 lLl~Gp~G~GKttl~~~la~   57 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAR   57 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHH
Confidence            34889999999999999874